22 0 0 0 chr15 12 34 -85695720 + AT_rich Low_complexity Low_complexity 1 22 0 1393 304 55 21 chr15 45 317 -85695437 - MLT1H1 LTR MaLR -24 531 269 2435 51 7 0 chr15 317 612 -85695142 - AluY SINE Alu -14 297 1 1393 304 55 21 chr15 612 853 -85694901 - MLT1H1 LTR MaLR -286 269 1 773 276 22 41 chr15 874 1176 -85694578 - L2 LINE L2 -277 3036 2736 1121 138 0 6 chr15 1182 1356 -85694398 - L1PA13 LINE L1 0 6163 5991 930 109 7 0 chr15 1356 1494 -85694260 + L1P4 LINE L1 5347 5485 -676 583 110 0 0 chr15 1594 1676 -85694078 + AluSp/q SINE Alu 221 302 -11 1632 240 112 14 chr15 2805 3321 -85692433 + L1ME3 LINE L1 5489 6055 -107 1363 167 40 0 chr15 3321 3543 -85692211 + AluJo SINE Alu 1 231 -81 265 158 0 0 chr15 3543 3581 -85692173 - Alu SINE Alu -257 43 6 2174 117 3 3 chr15 3655 3962 -85691792 - AluSp SINE Alu -6 307 1 1432 152 13 0 chr15 4185 4409 -85691345 + AluJb SINE Alu 1 227 -85 2085 93 0 0 chr15 4416 4684 -85691070 - AluSx SINE Alu -44 268 1 1695 135 0 75 chr15 4688 5007 -85690747 - AluJo SINE Alu -17 295 1 384 268 82 89 chr15 5505 5774 -85689980 - L1M2 LINE L1 -5442 1407 1141 324 261 101 138 chr15 9617 10267 -85685487 - L1M2 LINE L1 -5399 1450 451 2484 59 0 7 chr15 10649 10955 -85684799 - AluY SINE Alu -7 304 1 291 85 6 0 chr15 11508 11557 -85684197 - MLT2C1 LTR ERVL -4 410 349 804 252 25 3 chr15 12089 12324 -85683430 + L1MC4 LINE L1 7337 7631 -364 310 227 38 8 chr15 12324 12456 -85683298 + GA-rich Low_complexity Low_complexity 4 139 0 628 184 101 77 chr15 12512 12624 -85683130 + L1MC4 LINE L1 7593 7714 -328 2365 57 0 41 chr15 12624 12938 -85682816 - AluY SINE Alu -10 301 1 628 184 101 77 chr15 12938 13032 -85682722 + L1MC4 LINE L1 7714 7804 -238 186 143 0 0 chr15 13074 13109 -85682645 + (TA)n Simple_repeat Simple_repeat 1 35 0 1031 181 26 71 chr15 13144 13370 -85682384 - MER20 DNA MER1_type 0 219 4 800 306 39 11 chr15 13411 13770 -85681984 + L1MEc LINE L1 1601 1969 -4427 1439 195 66 10 chr15 13805 14107 -85681647 - L1MC1 LINE L1 0 6333 6015 822 287 10 10 chr15 14448 14748 -85681006 + L1MEc LINE L1 2209 2508 -3707 1336 262 51 8 chr15 14839 15346 -85680408 + L1MEc LINE L1 2506 3034 -3181 * 3056 116 57 116 chr15 15326 15455 -85680299 + L1MA5A LINE L1 5658 5793 -504 1797 128 79 0 chr15 15455 15721 -85680033 + AluSx SINE Alu 1 287 -25 3056 116 57 116 chr15 15721 16271 -85679483 + L1MA5A LINE L1 5793 6297 0 280 288 221 0 chr15 16386 16685 -85679069 + L1MEc LINE L1 3164 3528 -2687 301 214 14 0 chr15 16699 16769 -85678985 - L1 LINE L1 -2743 3403 3333 719 215 11 6 chr15 16775 16952 -85678802 + L1 LINE L1 2894 3071 -3075 22 0 0 0 chr15 20360 20382 -85675372 + GC_rich Low_complexity Low_complexity 1 22 0 1741 221 30 24 chr15 20738 21169 -85674585 + L1 LINE L1 3062 3498 -2648 2210 71 0 39 chr15 21169 21477 -85674277 + AluY SINE Alu 1 296 -15 1741 221 30 24 chr15 21477 21552 -85674202 + L1 LINE L1 3498 3571 -2575 1135 170 21 21 chr15 21567 21761 -85673993 - AluJo SINE Alu -115 197 4 662 44 11 0 chr15 21773 21863 -85673891 + (TA)n Simple_repeat Simple_repeat 2 92 0 2142 128 3 0 chr15 21864 22161 -85673593 - AluSx SINE Alu -14 298 1 2244 110 3 0 chr15 22696 22996 -85672758 - AluY SINE Alu -10 301 1 1717 74 4 81 chr15 23247 23518 -85672236 - AluY SINE Alu -2 309 60 364 143 0 0 chr15 24143 24199 -85671555 + AluJb SINE Alu 59 114 -188 811 205 13 0 chr15 24214 24370 -85671384 - AluSp SINE Alu -24 289 132 1703 172 17 7 chr15 24374 24671 -85671083 + LTR15 LTR ERV1 188 487 -6 810 189 18 79 chr15 24737 24856 -85670898 + AluJb SINE Alu 2 102 -210 1710 173 0 0 chr15 24856 25156 -85670598 - AluSp SINE Alu -13 300 1 810 189 18 79 chr15 25156 25264 -85670490 + AluJb SINE Alu 102 215 -97 254 88 0 0 chr15 25267 25301 -85670453 + AluJb SINE Alu 84 117 -185 734 142 0 25 chr15 25328 25448 -85670306 - AluSp SINE Alu -194 119 3 628 170 18 9 chr15 25479 25591 -85670163 + AluJb SINE Alu 2 114 -198 908 161 11 0 chr15 25593 25767 -85669987 - AluSp SINE Alu -16 297 122 235 143 18 0 chr15 26223 26279 -85669475 + G-rich Low_complexity Low_complexity 3 59 0 25 31 0 0 chr15 26748 26780 -85668974 + AT_rich Low_complexity Low_complexity 1 32 0 2435 76 0 0 chr15 26812 27115 -85668639 - AluY SINE Alu -8 303 1 273 262 24 12 chr15 27467 27551 -85668203 + L2 LINE L2 3228 3312 -1 255 345 0 0 chr15 27655 27739 -85668015 + L2 LINE L2 3230 3313 0 1693 167 0 44 chr15 28112 28430 -85667324 - AluJb SINE Alu 0 312 9 26 30 0 0 chr15 28949 28982 -85666772 + AT_rich Low_complexity Low_complexity 1 33 0 2281 57 0 0 chr15 29124 29436 -85666318 + AluY SINE Alu 1 312 0 297 0 0 0 chr15 30405 30438 -85665316 + (TG)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chr15 31647 31676 -85664078 + (T)n Simple_repeat Simple_repeat 1 29 0 348 313 32 47 chr15 32115 32393 -85663361 + L1ME4a LINE L1 5708 5981 -140 707 89 0 20 chr15 32508 32609 -85663145 - AluSc SINE Alu -9 300 202 997 320 120 35 chr15 32814 33322 -85662432 + L2 LINE L2 2180 2643 -670 2205 118 0 0 chr15 33322 33626 -85662128 - AluSx SINE Alu -8 304 1 997 320 120 35 chr15 33626 34158 -85661596 + L2 LINE L2 2643 3313 0 22 35 0 0 chr15 34416 34445 -85661309 + AT_rich Low_complexity Low_complexity 1 29 0 2475 58 6 13 chr15 34688 34999 -85660755 + AluSp SINE Alu 1 309 -4 299 232 52 45 chr15 35550 35705 -85660049 - Charlie7 DNA MER1_type -36 2576 2421 24 67 0 0 chr15 36371 36416 -85659338 + AT_rich Low_complexity Low_complexity 1 45 0 210 133 40 46 chr15 37673 37846 -85657908 + (TA)n Simple_repeat Simple_repeat 1 172 0 405 141 33 56 chr15 37857 38134 -85657620 + (CATATA)n Simple_repeat Simple_repeat 1 270 0 443 136 32 55 chr15 38136 38609 -85657145 + (TA)n Simple_repeat Simple_repeat 1 461 0 184 70 70 18 chr15 38882 38939 -85656815 + (TA)n Simple_repeat Simple_repeat 1 60 0 231 318 73 27 chr15 39193 39303 -85656451 - L2 LINE L2 0 3272 3158 1130 158 11 5 chr15 39828 40018 -85655736 + L1PB3 LINE L1 5959 6149 -5 2392 39 4 0 chr15 40021 40339 -85655415 - AluY SINE Alu 0 319 1 189 0 0 0 chr15 40490 40511 -85655243 + (A)n Simple_repeat Simple_repeat 1 21 0 237 213 0 0 chr15 40511 40558 -85655196 + L2 LINE L2 3263 3309 -4 23 0 0 0 chr15 41076 41099 -85654655 + AT_rich Low_complexity Low_complexity 1 23 0 712 273 42 118 chr15 41545 41945 -85653809 + LTR16A LTR ERVL 68 437 -13 852 134 0 24 chr15 42160 42287 -85653467 + FLAM_C SINE Alu 1 124 -9 1948 112 0 0 chr15 43299 43557 -85652197 + AluSx SINE Alu 45 302 -10 237 366 30 22 chr15 43752 43886 -85651868 - L2 LINE L2 -2516 798 664 322 294 12 19 chr15 44274 44434 -85651320 - AluY SINE Alu -142 159 1 218 122 0 41 chr15 45690 45739 -85650015 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 1006 207 110 42 chr15 46017 46399 -85649355 + LTR37A LTR ERV1 19 426 0 24 0 0 0 chr15 47098 47122 -85648632 + AT_rich Low_complexity Low_complexity 1 24 0 2112 96 0 60 chr15 47384 47698 -85648056 - AluY SINE Alu -14 297 3 342 219 36 51 chr15 48374 48511 -85647243 - HAL1b LINE L1 -22 1326 1192 2315 82 0 3 chr15 48519 48825 -85646929 + AluY SINE Alu 1 305 -6 31 26 0 0 chr15 48843 48881 -85646873 + AT_rich Low_complexity Low_complexity 1 38 0 2331 57 3 17 chr15 49028 49328 -85646426 - AluY SINE Alu -15 296 1 269 211 0 0 chr15 49428 49480 -85646274 - FLAM SINE Alu -2 131 80 933 195 32 52 chr15 49503 49754 -85646000 - MLT1A1 LTR MaLR 0 365 120 1808 197 37 8 chr15 50014 50369 -85645385 - MLT1A1 LTR MaLR 0 365 1 1555 65 0 10 chr15 50391 50590 -85645164 - AluY SINE Alu -4 307 111 834 85 25 8 chr15 50831 50949 -85644805 + AluY SINE Alu 1 120 -191 537 262 94 20 chr15 51087 51289 -85644465 - MIR SINE MIR -30 232 16 3262 97 15 0 chr15 51530 51995 -85643759 - L1PA10 LINE L1 -1 6167 5696 1217 77 0 0 chr15 52000 52170 -85643584 + L1PA10 LINE L1 5517 5686 -482 2495 60 0 0 chr15 53619 53918 -85641836 - AluY SINE Alu -12 299 1 186 236 246 60 chr15 54097 54296 -85641458 - L2 LINE L2 -2739 575 340 250 300 225 0 chr15 54448 54568 -85641186 - MIR SINE MIR 0 262 116 245 208 21 0 chr15 54922 55018 -85640736 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 4778 126 22 19 chr15 55628 56405 -85639349 - MER4E LTR ERV1 0 779 1 24 0 0 0 chr15 56646 56670 -85639084 + AT_rich Low_complexity Low_complexity 1 24 0 2505 75 0 0 chr15 56696 57004 -85638750 + AluY SINE Alu 1 308 -3 1535 97 20 16 chr15 58957 59204 -85636550 - THE1C LTR MaLR -127 248 1 1598 154 68 7 chr15 60077 60356 -85635398 + AluSx SINE Alu 1 296 -16 2108 137 3 0 chr15 60361 60668 -85635086 + AluSg SINE Alu 1 308 -2 41 98 0 0 chr15 60685 60817 -85634937 + AT_rich Low_complexity Low_complexity 1 132 0 24 77 0 0 chr15 60865 60917 -85634837 + AT_rich Low_complexity Low_complexity 1 52 0 2018 93 31 10 chr15 61074 61365 -85634389 - AluY SINE Alu -14 297 1 2048 97 24 7 chr15 61368 61656 -85634098 - AluSc SINE Alu -16 293 1 185 378 18 18 chr15 62099 62210 -85633544 - L2 LINE L2 -251 3062 2952 2439 40 0 13 chr15 62306 62608 -85633146 - AluY SINE Alu -13 298 1 1005 244 122 29 chr15 62621 63039 -85632715 - MLT1E2 LTR MaLR -169 457 1 241 283 25 82 chr15 63101 63260 -85632494 - L2 LINE L2 -991 2323 2174 237 132 0 0 chr15 63464 63502 -85632252 + (CACG)n Simple_repeat Simple_repeat 1 38 0 271 211 13 0 chr15 63503 63579 -85632175 + MLT1D LTR MaLR 429 505 0 3374 202 61 11 chr15 63617 64422 -85631332 + L1MB7 LINE L1 4735 5636 -548 2034 118 0 0 chr15 64422 64701 -85631053 + AluSx SINE Alu 34 312 0 3374 202 61 11 chr15 64701 65259 -85630495 + L1MB7 LINE L1 5636 6165 -19 24 0 0 0 chr15 65297 65321 -85630433 + AT_rich Low_complexity Low_complexity 1 24 0 348 272 105 17 chr15 65505 65744 -85630010 + L1M4 LINE L1 4132 4391 -1755 209 200 0 0 chr15 66342 66382 -85629372 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 382 171 68 0 chr15 67583 67671 -85628083 + MSTC LTR MaLR 1 94 -334 241 300 50 40 chr15 67817 67917 -85627837 - L2 LINE L2 -3 3269 3169 2273 74 7 7 chr15 68980 69276 -85626478 + AluY SINE Alu 1 296 -15 2272 72 10 7 chr15 69289 69582 -85626172 + AluY SINE Alu 2 295 -16 449 218 142 58 chr15 69583 69808 -85625946 - L1MC4a LINE L1 -1520 6288 6045 1687 208 42 17 chr15 69953 70309 -85625445 - MLT1A1 LTR MaLR 0 365 1 2675 105 0 5 chr15 70603 70994 -85624760 - MER1A DNA MER1_type 0 529 141 36 62 0 0 chr15 72696 72760 -85622994 + AT_rich Low_complexity Low_complexity 1 64 0 21 36 0 0 chr15 73216 73244 -85622510 + AT_rich Low_complexity Low_complexity 1 28 0 929 155 42 10 chr15 74193 74386 -85621368 + LTR15 LTR ERV1 288 486 -7 246 108 0 0 chr15 74417 74454 -85621300 - Alu SINE Alu -265 37 1 563 188 8 8 chr15 74482 74599 -85621155 + AluJo/FLAM SINE Alu 1 117 -185 1657 160 3 3 chr15 74602 74909 -85620845 - AluSp SINE Alu 0 313 7 785 224 13 48 chr15 74943 75057 -85620697 + AluJb SINE Alu 1 105 -207 1562 156 6 50 chr15 75057 75377 -85620377 - AluSp SINE Alu -7 306 1 785 224 13 48 chr15 75377 75490 -85620264 + AluJb SINE Alu 105 220 -92 1730 146 6 43 chr15 75532 75854 -85619900 - AluSp SINE Alu -3 310 1 1325 147 6 107 chr15 75882 76001 -85619753 + AluJb SINE Alu 1 130 -182 1624 173 0 29 chr15 76001 76313 -85619441 - AluSp SINE Alu -10 303 1 1325 147 6 107 chr15 76313 76540 -85619214 + AluJb SINE Alu 130 312 0 288 0 0 0 chr15 76696 76728 -85619026 + (A)n Simple_repeat Simple_repeat 1 32 0 391 217 64 96 chr15 77176 77397 -85618357 + L1MC5 LINE L1 7609 7819 -142 2228 128 0 0 chr15 77397 77703 -85618051 + AluSq SINE Alu 1 306 -7 391 217 64 96 chr15 77703 77795 -85617959 + L1MC5 LINE L1 7819 7912 -49 256 310 117 12 chr15 77846 78017 -85617737 - L1MEd LINE L1 -5927 192 4 340 288 136 45 chr15 78476 78674 -85617080 + L1ME4a LINE L1 5621 5836 -285 1740 150 7 7 chr15 78986 79266 -85616488 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr15 79268 79295 -85616459 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1431 208 0 4 chr15 79335 79580 -85616174 + AluJo SINE Alu 1 244 -68 38 61 0 0 chr15 80322 80388 -85615366 + AT_rich Low_complexity Low_complexity 1 66 0 21 36 0 0 chr15 80844 80872 -85614882 + AT_rich Low_complexity Low_complexity 1 28 0 1788 60 20 8 chr15 81153 81402 -85614352 - MER11B LTR ERVK -984 252 1 1654 111 91 4 chr15 81402 81645 -85614109 + AluSx SINE Alu 49 312 0 268 250 307 21 chr15 81992 82132 -85613622 + L2 LINE L2 3114 3293 -20 26 0 0 0 chr15 82766 82792 -85612962 + AT_rich Low_complexity Low_complexity 1 26 0 765 180 24 24 chr15 82792 82959 -85612795 - L1MC3 LINE L1 -23 7762 7596 323 223 154 23 chr15 84181 84311 -85611443 + MER103 DNA DNA 8 154 -12 250 276 17 52 chr15 84550 84666 -85611088 + MER5A DNA MER1_type 56 167 -22 2646 48 0 0 chr15 84988 85299 -85610455 - AluY SINE Alu 0 311 1 186 342 179 5 chr15 85983 86173 -85609581 - L2 LINE L2 -1268 2046 1824 2202 238 46 26 chr15 87789 88529 -85607225 + L1ME3A LINE L1 5407 6161 -9 270 0 0 0 chr15 88731 88761 -85606993 + (TTCCC)n Simple_repeat Simple_repeat 5 34 0 2315 71 0 3 chr15 89397 89708 -85606046 - AluY SINE Alu 0 310 1 2506 31 41 0 chr15 90451 90741 -85605013 - AluY SINE Alu -9 302 1 556 184 14 14 chr15 91906 92047 -85603707 - L1MA10 LINE L1 -2 6332 6192 1000 188 10 5 chr15 92182 92374 -85603380 - AluJb SINE Alu -4 308 116 2522 223 76 14 chr15 92379 93736 -85602018 - L1ME1 LINE L1 -244 5922 4493 246 270 40 8 chr15 93862 93988 -85601766 + L1ME LINE L1 1243 1372 -5158 416 277 134 57 chr15 93996 94332 -85601422 + L1ME LINE L1 1332 1650 -4892 249 296 172 0 chr15 94332 94501 -85601253 + L1M2 LINE L1 2374 2571 -4278 1913 36 0 9 chr15 94783 95036 -85600718 + AluY SINE Alu 59 309 0 316 282 32 97 chr15 95150 95210 -85600544 + L1ME LINE L1 2159 2221 -4319 2235 115 0 0 chr15 95210 95506 -85600248 + AluSx SINE Alu 1 296 -16 316 282 32 97 chr15 95506 95661 -85600093 + L1ME LINE L1 2221 2360 -4180 21 0 0 0 chr15 95715 95736 -85600018 + AT_rich Low_complexity Low_complexity 1 21 0 1243 121 0 0 chr15 95737 95910 -85599844 + AluSg/x SINE Alu 121 293 -17 1576 191 48 18 chr15 95910 96302 -85599452 + L1MB4 LINE L1 5777 6180 0 497 217 95 59 chr15 97094 97315 -85598439 + L1MC5 LINE L1 7680 7908 -53 1934 100 12 0 chr15 97908 98167 -85597587 + AluSq SINE Alu 1 262 -51 1324 211 219 20 chr15 98173 98684 -85597070 + MER90 LTR ERV1 2 614 0 1975 162 3 0 chr15 99302 99598 -85596156 + AluJb SINE Alu 1 297 -15 390 318 35 0 chr15 99601 99774 -85595980 + L1MC4 LINE L1 6763 6941 -1101 279 250 73 0 chr15 99977 100073 -85595681 + L1MC5 LINE L1 7124 7226 -735 306 291 109 11 chr15 100207 100382 -85595372 + L1MC5 LINE L1 7305 7496 -465 1002 178 201 22 chr15 100398 100555 -85595199 + MLT1B LTR MaLR 15 143 -231 2164 108 7 0 chr15 100555 100852 -85594902 + AluSx SINE Alu 5 303 -9 1002 178 201 22 chr15 100852 101010 -85594744 + MLT1B LTR MaLR 143 374 0 368 254 48 60 chr15 101036 101304 -85594450 + L1MC5 LINE L1 7513 7777 -184 249 311 259 11 chr15 101569 101855 -85593899 + L2 LINE L2 2952 3308 -5 343 239 62 44 chr15 103898 104011 -85591743 + L1ME LINE L1 2 116 -5954 345 273 55 55 chr15 104696 104776 -85590978 + L1ME LINE L1 715 794 -5276 2221 78 10 0 chr15 104776 105071 -85590683 + AluSg SINE Alu 1 298 -12 345 273 55 55 chr15 105071 105320 -85590434 + L1ME LINE L1 793 1044 -5026 481 296 65 88 chr15 105323 105674 -85590080 + L1ME LINE L1 1065 1421 -4673 2333 87 0 0 chr15 107015 107324 -85588430 + AluY SINE Alu 1 309 -2 1131 133 0 0 chr15 107324 107490 -85588264 + AluSc SINE Alu 132 297 -12 2069 111 3 3 chr15 107600 107898 -85587856 - AluSx SINE Alu -14 298 1 935 178 40 0 chr15 108223 108397 -85587357 - MER58A DNA MER1_type 0 224 44 912 190 194 7 chr15 109661 109797 -85585957 - MER2 DNA MER2_type 0 344 235 2427 75 0 0 chr15 109797 110105 -85585649 - AluY SINE Alu -3 308 1 912 190 194 7 chr15 110105 110257 -85585497 - MER2 DNA MER2_type -109 235 2 1086 96 5 75 chr15 110403 110591 -85585163 - AluSg/x SINE Alu -3 309 135 2209 94 0 10 chr15 110591 110899 -85584855 - AluY SINE Alu -6 305 1 353 242 10 0 chr15 111131 111230 -85584524 - MER5A DNA MER1_type -80 98 10 301 264 179 9 chr15 113264 113370 -85582384 + L1ME4a LINE L1 5995 6118 -3 2113 89 7 13 chr15 113393 113697 -85582057 + AluSx SINE Alu 1 302 -10 1997 117 0 19 chr15 115332 115640 -85580114 - AluSg SINE Alu -8 302 1 695 167 0 0 chr15 116470 116584 -85579170 - FLAM_A SINE Alu -9 133 20 21 36 0 0 chr15 116770 116798 -85578956 + AT_rich Low_complexity Low_complexity 1 28 0 311 323 6 0 chr15 117068 117235 -85578519 + (CA)n Simple_repeat Simple_repeat 1 168 0 250 307 17 22 chr15 117550 117729 -85578025 + (CTCA)n Simple_repeat Simple_repeat 1 178 0 864 236 145 51 chr15 118063 118449 -85577305 + MLT1C LTR MaLR 3 425 -42 1504 166 80 43 chr15 118449 118861 -85576893 + MLT1C LTR MaLR 1 467 0 276 75 132 0 chr15 119238 119291 -85576463 - L1MC1 LINE L1 -9 6324 6265 626 211 55 0 chr15 119291 119419 -85576335 - AluJb SINE Alu -4 308 174 328 264 107 21 chr15 122926 123066 -85572688 + L1ME LINE L1 5631 5782 -339 2224 186 107 0 chr15 123068 123574 -85572180 + MER68 LTR ERV1 1 560 -2 1797 272 52 47 chr15 123582 124547 -85571207 + HERVL68 LTR ERVL 60 1117 -1920 30 59 0 0 chr15 124547 124598 -85571156 + AT_rich Low_complexity Low_complexity 1 51 0 369 0 0 0 chr15 124598 124639 -85571115 + (CA)n Simple_repeat Simple_repeat 2 42 0 225 139 0 0 chr15 124642 124685 -85571069 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 1544 148 0 44 chr15 124700 124971 -85570783 - AluJb SINE Alu -31 281 23 1390 213 67 13 chr15 125104 125554 -85570200 + L1MB5 LINE L1 2613 3086 -3060 912 196 5 5 chr15 125558 125747 -85570007 + AluJb SINE Alu 118 306 -6 1513 221 95 12 chr15 125752 125887 -85569867 + L1MB5 LINE L1 3112 3234 -2912 2311 87 0 6 chr15 125887 126198 -85569556 + AluSc SINE Alu 1 309 0 1513 221 95 12 chr15 126198 126569 -85569185 + L1MB5 LINE L1 3234 3660 -2486 3588 191 67 67 chr15 126574 127464 -85568290 + L1MB5 LINE L1 4457 5357 -817 2227 109 0 0 chr15 127464 127776 -85567978 + AluSx SINE Alu 1 312 0 3588 191 67 67 chr15 127776 128595 -85567159 + L1MB5 LINE L1 5357 6174 0 255 61 0 0 chr15 128602 128635 -85567119 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr15 131011 131033 -85564721 + AT_rich Low_complexity Low_complexity 1 22 0 1060 256 53 12 chr15 131203 131523 -85564231 - MER58B DNA MER1_type -5 336 4 2048 227 72 39 chr15 131677 132263 -85563491 + MER77 LTR ERV1 1 605 0 2232 78 3 29 chr15 132732 133040 -85562714 + AluSc SINE Alu 1 300 -9 2211 79 0 0 chr15 136773 137052 -85558702 - AluSq SINE Alu -26 287 9 1873 159 0 0 chr15 137067 137357 -85558397 - AluJb SINE Alu -22 290 1 750 244 45 42 chr15 139447 139783 -85555971 + L1MB3 LINE L1 2713 3049 -3097 387 208 32 97 chr15 139833 139987 -85555767 + L1MC5 LINE L1 6957 7100 -861 477 281 93 56 chr15 140155 140604 -85555150 + L1MC5 LINE L1 7317 7782 -179 2251 68 0 0 chr15 140610 140926 -85554828 + AluY SINE Alu 5 320 0 4576 179 60 8 chr15 141133 142009 -85553745 + L1MB3 LINE L1 4754 5728 -455 2136 101 3 7 chr15 142009 142317 -85553437 + AluSc SINE Alu 1 307 -2 4576 179 60 8 chr15 142317 142766 -85552988 + L1MB3 LINE L1 5728 6152 -31 241 302 17 17 chr15 142745 142861 -85552893 + L1ME2 LINE L1 3556 3671 -2475 * 1050 264 53 24 chr15 143118 143535 -85552219 + L1ME2 LINE L1 3723 4151 -1995 1096 272 101 34 chr15 143562 144379 -85551375 + L1ME2 LINE L1 4830 5667 -497 1342 155 102 11 chr15 144379 144643 -85551111 + AluJb SINE Alu 4 291 -21 1096 272 101 34 chr15 144643 144857 -85550897 + L1ME2 LINE L1 5667 5865 -299 213 271 0 0 chr15 145673 145732 -85550022 - L3b LINE CR1 -170 1413 1355 2007 128 0 0 chr15 145734 146031 -85549723 + AluSx SINE Alu 1 297 -15 369 0 0 0 chr15 146034 146075 -85549679 + (CA)n Simple_repeat Simple_repeat 2 42 0 312 208 0 42 chr15 146083 146155 -85549599 - L1MCa LINE L1 -4362 2064 1996 797 171 0 8 chr15 147635 147764 -85547990 - FLAM_A SINE Alu -5 128 1 21 0 0 0 chr15 147766 147787 -85547967 + AT_rich Low_complexity Low_complexity 1 21 0 2322 81 7 3 chr15 147888 148196 -85547558 - AluSq SINE Alu -4 309 1 1958 101 0 34 chr15 150126 150423 -85545331 - AluSc SINE Alu -22 287 1 23 33 0 0 chr15 150919 150949 -85544805 + AT_rich Low_complexity Low_complexity 1 30 0 2044 153 0 0 chr15 151629 151923 -85543831 + AluSx SINE Alu 1 294 -18 1099 218 5 63 chr15 151930 151987 -85543767 - Charlie5 DNA MER1_type -57 2567 2508 2251 106 3 0 chr15 151987 152280 -85543474 + AluSx SINE Alu 1 294 -18 1099 218 5 63 chr15 152280 152589 -85543165 - Charlie5 DNA MER1_type -116 2508 2222 280 246 32 56 chr15 152572 152698 -85543056 - Charlie5 DNA MER1_type -2489 123 1 * 2165 121 0 13 chr15 154148 154453 -85541301 + AluSx SINE Alu 1 301 -11 1984 138 7 0 chr15 154470 154774 -85540980 + AluSp SINE Alu 1 306 -7 1026 248 158 38 chr15 155303 155524 -85540230 + L1ME2 LINE L1 5487 5680 -484 1683 174 10 3 chr15 155524 155822 -85539932 + AluJb SINE Alu 3 302 -10 1026 248 158 38 chr15 155822 156105 -85539649 + L1ME2 LINE L1 5680 6052 -112 1963 74 0 4 chr15 157121 157363 -85538391 - AluY SINE Alu -70 241 1 280 188 94 0 chr15 158148 158212 -85537542 + L1M4 LINE L1 2617 2686 -3460 369 85 0 0 chr15 158214 158261 -85537493 - AluY SINE Alu -6 296 250 1439 94 0 21 chr15 158261 158452 -85537302 - AluY SINE Alu -124 187 1 2803 237 55 51 chr15 158452 158656 -85537098 + L1M4 LINE L1 2679 2881 -3265 1974 128 3 10 chr15 158656 158945 -85536809 + AluSp SINE Alu 1 287 -26 2803 237 55 51 chr15 158945 159554 -85536200 + L1M4 LINE L1 2881 3486 -2660 2298 107 3 3 chr15 159554 159862 -85535892 - AluSq SINE Alu -4 309 2 2803 237 55 51 chr15 159862 160141 -85535613 + L1M4 LINE L1 3486 3780 -2366 2080 116 0 47 chr15 160141 160459 -85535295 + AluSx SINE Alu 1 303 -9 2803 237 55 51 chr15 160459 160527 -85535227 + L1M4 LINE L1 3780 3846 -2300 922 130 0 0 chr15 160531 160662 -85535092 + FLAM_C SINE Alu 6 136 -7 1591 252 29 25 chr15 160682 161209 -85534545 + L1M4 LINE L1 3839 4367 -1779 225 128 26 0 chr15 162496 162535 -85533219 + MER58B DNA MER1_type 302 341 0 1921 151 43 0 chr15 164218 164517 -85531237 + AluSx SINE Alu 1 312 0 708 234 53 6 chr15 164628 164799 -85530955 - MER58A DNA MER1_type -1 223 45 2245 103 3 0 chr15 166702 166993 -85528761 + AluSq SINE Alu 1 292 -21 1053 252 45 13 chr15 167048 167358 -85528396 + L1ME1 LINE L1 5803 6122 -44 1590 111 0 4 chr15 170422 170647 -85525107 - AluSp SINE Alu -5 308 85 270 52 7 0 chr15 170671 170750 -85525004 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 28 48 0 0 chr15 170754 170796 -85524958 + AT_rich Low_complexity Low_complexity 1 42 0 2188 93 0 23 chr15 171849 172150 -85523604 + AluY SINE Alu 1 294 -17 21 36 0 0 chr15 174228 174256 -85521498 + AT_rich Low_complexity Low_complexity 1 28 0 239 300 90 0 chr15 175230 175330 -85520424 - MIR SINE MIR -60 148 40 819 93 0 0 chr15 176144 176279 -85519475 + AluY SINE Alu 175 309 0 1708 114 4 0 chr15 176447 176684 -85519070 + AluSg/x SINE Alu 75 312 0 1827 120 11 19 chr15 176968 177234 -85518520 + AluSx SINE Alu 49 312 0 344 172 81 46 chr15 177235 177322 -85518432 + L1MD2 LINE L1 5801 5890 -469 1292 175 18 13 chr15 177322 177550 -85518204 + AluJo SINE Alu 60 288 -24 25 31 0 0 chr15 177550 177582 -85518172 + AT_rich Low_complexity Low_complexity 1 32 0 1029 210 174 3 chr15 177614 177942 -85517812 + L1MD2 LINE L1 5960 6343 -16 1409 178 63 72 chr15 178289 178443 -85517311 + MER2 DNA MER2_type 1 155 -190 792 164 0 15 chr15 178443 178577 -85517177 + FLAM_C SINE Alu 2 133 0 1607 160 82 3 chr15 178583 178865 -85516889 + AluJb SINE Alu 1 304 -8 1409 178 63 72 chr15 178865 179051 -85516703 + MER2 DNA MER2_type 160 345 0 206 246 15 0 chr15 179073 179138 -85516616 + A-rich Low_complexity Low_complexity 4 69 0 2048 97 48 7 chr15 179469 179758 -85515996 - AluSp SINE Alu -12 301 1 1401 153 142 47 chr15 179993 180084 -85515670 + AluJo SINE Alu 1 82 -230 324 0 0 0 chr15 180084 180120 -85515634 + (CA)n Simple_repeat Simple_repeat 1 36 0 1401 153 142 47 chr15 180120 180303 -85515451 + AluJo SINE Alu 82 301 -11 492 264 34 7 chr15 180862 181010 -85514744 - MIR SINE MIR -30 232 81 2226 104 0 17 chr15 181091 181390 -85514364 + AluSx SINE Alu 1 294 -18 5260 211 69 83 chr15 182551 183120 -85512634 + L1MDa LINE L1 831 1406 -5134 1948 124 4 0 chr15 183120 183395 -85512359 + AluSg SINE Alu 1 276 -34 5260 211 69 83 chr15 183395 184333 -85511421 + L1MDa LINE L1 1406 2355 -4185 1667 158 83 9 chr15 184333 184669 -85511085 - MER46B DNA MER2_type 0 236 1 5260 211 69 83 chr15 184669 185107 -85510647 + L1MDa LINE L1 2355 2798 -3742 2232 108 26 7 chr15 185107 185414 -85510340 + AluSq SINE Alu 1 313 0 5260 211 69 83 chr15 185414 187115 -85508639 + L1MDa LINE L1 2798 4422 -2118 245 311 126 0 chr15 188033 188152 -85507602 - MIR SINE MIR 0 262 129 2264 93 13 3 chr15 188187 188489 -85507265 - AluY SINE Alu -6 305 1 1842 99 15 33 chr15 188744 189016 -85506738 + AluSp SINE Alu 34 300 -13 1935 132 0 35 chr15 189018 189328 -85506426 + AluSq SINE Alu 1 299 -14 314 325 38 24 chr15 189361 189573 -85506181 + L1MEc LINE L1 1850 2064 -4332 833 242 148 25 chr15 189582 189975 -85505779 + L1MEc LINE L1 2215 2655 -3560 397 167 0 0 chr15 190769 190829 -85504925 - AluS SINE Alu -9 292 233 1251 121 0 0 chr15 190831 190996 -85504758 - AluSq SINE Alu -148 165 1 2080 194 84 20 chr15 190996 191554 -85504200 + L1MEc LINE L1 2752 3345 -2870 246 309 31 0 chr15 191597 191694 -85504060 - MIR SINE MIR -22 240 141 742 209 26 13 chr15 191702 191855 -85503899 - FRAM SINE Alu -21 155 1 1441 83 0 0 chr15 192220 192401 -85503353 + AluY SINE Alu 131 311 0 2396 101 0 3 chr15 192411 192718 -85503036 + AluSq SINE Alu 1 306 -7 1415 173 43 18 chr15 192721 192998 -85502756 + L1M3 LINE L1 5325 5608 -572 606 237 0 0 chr15 192999 193117 -85502637 + FLAM_C SINE Alu 2 119 -24 694 108 0 0 chr15 193127 193229 -85502525 + L1MB3 LINE L1 6074 6175 -8 25 31 0 0 chr15 193229 193261 -85502493 + AT_rich Low_complexity Low_complexity 1 32 0 2617 59 0 0 chr15 193676 193979 -85501775 + AluY SINE Alu 1 303 -8 443 241 73 7 chr15 194552 194689 -85501065 - MER21B LTR ERV1 -57 806 661 577 220 16 44 chr15 194693 194875 -85500879 + L1MDa LINE L1 1543 1719 -4821 2073 164 117 5 chr15 194920 195347 -85500407 + LTR53 LTR ERVL 5 479 -40 813 222 57 4 chr15 195420 195650 -85500104 + L1ME2 LINE L1 5323 5564 -2478 895 248 17 111 chr15 195802 195908 -85499846 + MER58B DNA MER1_type 3 117 -2303 1710 79 8 75 chr15 195908 196160 -85499594 - AluSx SINE Alu -77 235 1 895 248 17 111 chr15 196160 196425 -85499329 + MER58B DNA MER1_type 117 339 -2 2039 149 0 0 chr15 196657 196959 -85498795 + AluSg1 SINE Alu 1 302 -7 798 233 118 28 chr15 198028 198315 -85497439 + L1ME2 LINE L1 5851 6163 -1 273 29 0 0 chr15 198468 198502 -85497252 + (TG)n Simple_repeat Simple_repeat 1 34 0 28 0 0 0 chr15 198515 198543 -85497211 + AT_rich Low_complexity Low_complexity 1 28 0 2266 114 0 3 chr15 198606 198914 -85496840 - AluSx SINE Alu -2 310 4 2367 75 0 16 chr15 198977 199283 -85496471 + AluY SINE Alu 2 302 -9 276 105 0 0 chr15 199288 199326 -85496428 - tRNA-Phe-TTC tRNA tRNA -38 38 1 390 300 144 34 chr15 200150 200232 -85495522 + L1MC4a LINE L1 5856 5928 -1880 2171 115 3 3 chr15 200232 200545 -85495209 + AluSq SINE Alu 1 313 0 390 300 144 34 chr15 200545 200815 -85494939 + L1MC4a LINE L1 5928 6247 -1561 25 51 0 0 chr15 200846 200885 -85494869 + AT_rich Low_complexity Low_complexity 1 39 0 2170 125 3 6 chr15 201004 201317 -85494437 + AluSx SINE Alu 1 312 0 471 270 138 6 chr15 201404 201563 -85494191 + L1MD3 LINE L1 6663 6842 -1153 2187 128 0 0 chr15 201596 201893 -85493861 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr15 201927 201949 -85493805 + AT_rich Low_complexity Low_complexity 1 22 0 429 70 0 0 chr15 202189 202246 -85493508 + (TA)n Simple_repeat Simple_repeat 1 57 0 2170 119 3 0 chr15 202267 202562 -85493192 - AluSc SINE Alu -13 296 1 6175 146 16 40 chr15 202562 204348 -85491406 - L1MA3 LINE L1 -246 6059 4231 2372 101 0 0 chr15 204348 204656 -85491098 + AluSx SINE Alu 1 308 -4 6175 146 16 40 chr15 204656 204819 -85490935 - L1MA3 LINE L1 -2074 4231 4162 2173 133 13 0 chr15 204819 205127 -85490627 - AluSx SINE Alu 0 312 1 6175 146 16 40 chr15 205127 205166 -85490588 - L1MA3 LINE L1 -2143 4162 4124 5622 15 0 8 chr15 205173 205781 -85489973 - L1PA2 LINE L1 0 6155 5553 5225 22 2 0 chr15 205781 206561 -85489193 + L1PA2 LINE L1 4781 5561 -594 * 6471 169 47 23 chr15 206557 207294 -85488460 - L1MA3 LINE L1 -2019 4127 3344 2146 135 0 3 chr15 207294 207598 -85488156 - AluSx SINE Alu -9 303 1 6471 169 47 23 chr15 207598 208193 -85487561 - L1MA3 LINE L1 -2802 3344 2764 * 7910 151 17 7 chr15 208185 209508 -85486246 - L1 LINE L1 -1158 4988 3652 1878 217 35 27 chr15 209508 209987 -85485767 - L1MA3 LINE L1 -3384 2762 2280 1129 202 129 14 chr15 210018 210305 -85485449 + MLT1E1 LTR MaLR 326 645 -9 781 200 21 14 chr15 210486 210626 -85485128 + AluJo SINE Alu 1 141 -171 1744 160 17 3 chr15 210628 210915 -85484839 + AluJb SINE Alu 1 291 -21 51 0 0 0 chr15 210915 210966 -85484788 + AT_rich Low_complexity Low_complexity 1 51 0 2218 120 0 0 chr15 211259 211568 -85484186 + AluY SINE Alu 1 309 -2 1981 140 3 3 chr15 211647 211947 -85483807 + AluJb SINE Alu 1 300 -12 223 336 43 51 chr15 211970 212223 -85483531 - L2 LINE L2 -900 2414 2164 1436 202 26 0 chr15 212816 213088 -85482666 + AluJo SINE Alu 1 279 -33 188 86 29 0 chr15 213090 213125 -85482629 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 203 308 58 29 chr15 213427 213531 -85482223 - MIR SINE MIR -136 126 20 2142 43 98 7 chr15 213657 213933 -85481821 - AluY SINE Alu -10 301 1 251 157 20 0 chr15 214918 214969 -85480785 + MER41A LTR ERV1 402 453 -101 437 202 43 40 chr15 214984 215041 -85480713 + MER58B DNA MER1_type 70 125 -2295 2226 96 3 20 chr15 215041 215344 -85480410 + AluSg SINE Alu 1 298 -12 437 202 43 40 chr15 215344 215518 -85480236 + MER58B DNA MER1_type 125 340 -1 969 94 23 0 chr15 215980 216108 -85479646 + AluSg SINE Alu 1 131 -179 1230 150 0 0 chr15 216526 216713 -85479041 + AluSg SINE Alu 119 305 -5 799 180 0 0 chr15 216823 216951 -85478803 + FLAM_C SINE Alu 1 128 -5 2112 80 62 0 chr15 217247 217523 -85478231 - AluSc SINE Alu -16 293 1 2186 107 7 0 chr15 217563 217854 -85477900 - AluSx SINE Alu -19 293 1 903 251 58 86 chr15 217962 218392 -85477362 + L1MD1 LINE L1 5825 6242 0 2059 107 17 3 chr15 218810 219100 -85476654 + AluSx SINE Alu 1 294 -18 2187 95 20 16 chr15 219768 220072 -85475682 + AluSx SINE Alu 1 305 -7 2235 92 10 0 chr15 220586 220878 -85474876 - AluSq SINE Alu -18 295 1 21 36 0 0 chr15 221203 221231 -85474523 + AT_rich Low_complexity Low_complexity 1 28 0 191 188 21 0 chr15 222053 222101 -85473653 + GA-rich Low_complexity Low_complexity 1 49 0 384 268 82 89 chr15 222410 222679 -85473075 + L1M4c LINE L1 1141 1407 -5442 1695 135 0 75 chr15 223177 223496 -85472258 + AluJo SINE Alu 1 295 -17 2085 93 0 0 chr15 223500 223768 -85471986 + AluSx SINE Alu 1 268 -44 1432 152 13 0 chr15 223775 223999 -85471755 - AluJb SINE Alu -85 227 1 2121 120 3 3 chr15 224222 224523 -85471231 + AluSp SINE Alu 1 301 -12 465 257 37 39 chr15 224525 224709 -85471045 + L1M4c LINE L1 2887 3074 -3774 1892 162 3 0 chr15 224709 225011 -85470743 + AluJb SINE Alu 1 303 -9 465 257 37 39 chr15 225011 225037 -85470717 + L1M4c LINE L1 3074 3099 -3749 2116 105 10 0 chr15 225039 225335 -85470419 - AluSq SINE Alu -9 304 6 2072 138 0 0 chr15 225364 225660 -85470094 + AluSx SINE Alu 1 296 -16 2303 109 3 0 chr15 225820 226132 -85469622 - AluSp SINE Alu 0 313 1 2307 100 0 3 chr15 226136 226436 -85469318 - AluSx SINE Alu -13 299 1 2114 133 0 0 chr15 226555 226849 -85468905 - AluJb SINE Alu -18 294 1 24 0 0 0 chr15 226920 226944 -85468810 + AT_rich Low_complexity Low_complexity 1 24 0 2333 74 0 10 chr15 226951 227248 -85468506 + AluY SINE Alu 5 298 -13 22 0 0 0 chr15 227441 227463 -85468291 + AT_rich Low_complexity Low_complexity 1 22 0 2388 75 0 31 chr15 227606 227926 -85467828 - AluY SINE Alu -1 310 1 186 284 0 0 chr15 228089 228170 -85467584 + T-rich Low_complexity Low_complexity 5 85 0 2425 155 52 2 chr15 228419 228825 -85466929 + MSTB LTR MaLR 1 426 0 517 100 0 67 chr15 229483 229573 -85466181 - L1PA8 LINE L1 -6 6166 6083 841 235 6 6 chr15 229734 229913 -85465841 - MLT1A1 LTR MaLR -15 350 172 2342 110 33 0 chr15 230014 230350 -85465404 + L1PA13 LINE L1 5628 5974 -189 631 266 39 34 chr15 230352 230585 -85465169 - L2 LINE L2 -570 2744 2511 49 71 0 0 chr15 230735 230833 -85464921 + AT_rich Low_complexity Low_complexity 1 98 0 2714 109 8 16 chr15 231824 232191 -85463563 - THE1B LTR MaLR 0 364 1 6882 124 25 43 chr15 232191 233300 -85462454 - THE1B-int LTR MaLR 0 1580 490 2272 68 23 16 chr15 233300 233608 -85462146 - AluY SINE Alu -1 310 1 6882 124 25 43 chr15 233608 233641 -85462113 - THE1B-int LTR MaLR -1090 490 458 2278 78 0 0 chr15 234101 234405 -85461349 - AluY SINE Alu 0 304 1 1100 92 7 7 chr15 234532 234684 -85461070 + AluY SINE Alu 1 152 -159 225 94 0 0 chr15 234787 234819 -85460935 + (A)n Simple_repeat Simple_repeat 1 32 0 982 253 25 8 chr15 234819 235056 -85460698 - MLT1H1 LTR MaLR -24 531 291 2447 47 7 0 chr15 235091 235388 -85460366 - AluY SINE Alu -12 299 1 1981 140 3 3 chr15 236103 236403 -85459351 - AluJb SINE Alu -12 300 1 2458 68 0 3 chr15 236483 236791 -85458963 - AluY SINE Alu -4 307 1 186 284 0 0 chr15 236954 237035 -85458719 + T-rich Low_complexity Low_complexity 5 85 0 2362 160 52 5 chr15 237284 237691 -85458063 + MSTB LTR MaLR 1 426 0 488 111 0 67 chr15 238348 238438 -85457316 - L1PA8 LINE L1 -6 6166 6083 1675 226 9 6 chr15 238599 238948 -85456806 - MLT1A1 LTR MaLR -15 350 1 347 322 106 35 chr15 238975 239230 -85456524 - L1 LINE L1 -2273 3873 3601 24 0 0 0 chr15 239308 239332 -85456422 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr15 239737 239758 -85455996 + AT_rich Low_complexity Low_complexity 1 21 0 740 102 0 10 chr15 239971 240113 -85455641 - AluSp/q SINE Alu 0 313 192 327 275 88 0 chr15 240451 240542 -85455212 + L2 LINE L2 3154 3252 -20 595 264 97 33 chr15 240573 240842 -85454912 + MLT1E2 LTR MaLR 1 285 -341 2628 45 0 0 chr15 241162 241473 -85454281 - AluY SINE Alu 0 311 1 502 265 66 24 chr15 241477 241643 -85454111 - MLT1H1 LTR MaLR -345 245 73 1459 122 77 12 chr15 242339 242586 -85453168 - L1PA10 LINE L1 -2 6166 5904 505 232 0 11 chr15 242630 242811 -85452943 + (TA)n Simple_repeat Simple_repeat 2 180 0 229 260 0 41 chr15 242834 242957 -85452797 + A-rich Low_complexity Low_complexity 1 118 0 398 188 10 0 chr15 242957 243053 -85452701 + (TA)n Simple_repeat Simple_repeat 2 98 0 198 345 0 0 chr15 243568 243623 -85452131 - MIR SINE MIR -133 75 21 1980 139 7 13 chr15 243848 244151 -85451603 - AluJb SINE Alu -11 301 1 241 192 208 48 chr15 244346 244471 -85451283 - MER103 DNA DNA -20 146 2 951 174 64 100 chr15 244688 244999 -85450755 + AluY SINE Alu 1 300 -1 578 290 44 30 chr15 245002 245077 -85450677 + L1M4 LINE L1 4378 4451 -1695 1477 195 31 92 chr15 245077 245466 -85450288 + MLT1A1 LTR MaLR 1 365 0 578 290 44 30 chr15 245466 245687 -85450067 + L1M4 LINE L1 4451 4678 -1468 772 174 14 28 chr15 245700 245844 -85449910 + FLAM_C SINE Alu 2 143 0 1565 159 67 14 chr15 245891 246174 -85449580 - AluJb SINE Alu -14 298 1 198 0 0 0 chr15 246182 246204 -85449550 + (T)n Simple_repeat Simple_repeat 1 22 0 281 238 16 0 chr15 246405 246468 -85449286 - MIR SINE MIR -112 150 87 1585 174 20 40 chr15 246696 246994 -85448760 - AluJo SINE Alu -20 292 1 255 61 0 0 chr15 247005 247037 -85448717 + (TG)n Simple_repeat Simple_repeat 1 65 0 255 61 0 0 chr15 247037 247070 -85448684 + (TG)n Simple_repeat Simple_repeat 2 34 0 908 219 26 59 chr15 247255 247561 -85448193 - L1MA9 LINE L1 -30 6282 5987 294 164 0 0 chr15 247734 247789 -85447965 + (TCTCTG)n Simple_repeat Simple_repeat 4 58 0 * 414 139 0 0 chr15 247782 247854 -85447900 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 2151 131 3 3 chr15 248329 248641 -85447113 - AluJb SINE Alu 0 312 1 295 214 0 0 chr15 248731 248787 -85446967 + MER3 DNA MER1_type 1 56 -153 836 201 53 0 chr15 248798 248967 -85446787 + AluJb SINE Alu 133 310 -2 319 285 106 68 chr15 248967 249174 -85446580 + L1MEd LINE L1 931 1145 -4974 2138 110 0 0 chr15 249211 249520 -85446234 - AluY SINE Alu 0 309 1 211 259 0 19 chr15 249829 249883 -85445871 + (CA)n Simple_repeat Simple_repeat 2 54 0 2620 49 0 0 chr15 251494 251798 -85443956 + AluY SINE Alu 1 304 -7 270 81 0 0 chr15 252047 252084 -85443670 + (TA)n Simple_repeat Simple_repeat 1 37 0 207 0 0 0 chr15 252083 252106 -85443648 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 6074 70 5 4 chr15 252324 253082 -85442672 + L1PA7 LINE L1 5383 6141 -13 3877 63 2 4 chr15 252590 253083 -85442671 + L1PA7 LINE L1 5651 6173 0 240 0 32 0 chr15 253083 253114 -85442640 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 801 274 55 30 chr15 253194 253522 -85442232 + LTR16B LTR ERVL 129 464 0 308 265 15 98 chr15 253526 253658 -85442096 - MIR SINE MIR -95 167 47 635 158 0 0 chr15 253837 253938 -85441816 + AluJb SINE Alu 136 236 -76 266 178 0 0 chr15 253980 254025 -85441729 + Alu SINE Alu 248 292 -9 631 266 179 19 chr15 254555 254818 -85440936 + L1ME3A LINE L1 5430 5734 -428 522 278 130 40 chr15 254820 255173 -85440581 + L1ME3A LINE L1 5782 6166 -4 2295 68 0 0 chr15 255581 255877 -85439877 - AluY SINE Alu -15 296 1 1488 246 81 27 chr15 258487 258930 -85436824 - MLT1C LTR MaLR 0 467 1 310 160 0 0 chr15 259780 259830 -85435924 - MIR3 SINE MIR -21 187 138 2279 93 0 0 chr15 259855 260157 -85435597 + AluY SINE Alu 1 302 -9 2190 67 0 0 chr15 260917 261221 -85434533 + AluY SINE Alu 1 304 0 758 252 141 27 chr15 262236 262569 -85433185 + L1ME3 LINE L1 5685 6055 -107 1559 183 31 0 chr15 262569 262858 -85432896 + AluJb SINE Alu 1 298 -14 2073 226 56 56 chr15 262858 263477 -85432277 - L1M4 LINE L1 -2651 3495 2874 1898 122 0 10 chr15 263477 263772 -85431982 - AluSq SINE Alu -21 292 1 2073 226 56 56 chr15 263772 263973 -85431781 - L1M4 LINE L1 -3271 2875 2675 302 202 53 26 chr15 263973 264065 -85431689 + (TATATG)n Simple_repeat Simple_repeat 4 101 -19 1967 83 0 18 chr15 264065 264341 -85431413 + AluY SINE Alu 31 301 -10 302 202 53 26 chr15 264341 264362 -85431392 + (TATATG)n Simple_repeat Simple_repeat 101 120 0 2221 74 0 48 chr15 264362 264674 -85431080 + AluY SINE Alu 1 297 -14 325 229 133 0 chr15 264676 264781 -85430973 - L1M4 LINE L1 -3460 2686 2568 1340 101 106 0 chr15 265751 265959 -85429795 + MER30 DNA MER1_type 1 230 0 1544 149 88 0 chr15 266942 267204 -85428550 - AluJb SINE Alu -19 293 9 943 279 126 26 chr15 268216 268504 -85427250 - L1ME2 LINE L1 -112 6052 5794 1683 163 13 3 chr15 268504 268811 -85426943 - AluJb SINE Alu 0 312 3 943 279 126 26 chr15 268811 269023 -85426731 - L1ME2 LINE L1 -370 5794 5502 2066 133 3 0 chr15 269559 269867 -85425887 - AluSp SINE Alu -4 309 1 2088 128 0 0 chr15 269890 270196 -85425558 - AluSx SINE Alu -6 306 1 282 92 0 138 chr15 270958 271045 -85424709 + (GGGTG)n Simple_repeat Simple_repeat 4 78 0 242 281 35 18 chr15 271706 271820 -85423934 + MER3 DNA MER1_type 48 163 -46 * 1117 232 3 10 chr15 271815 272125 -85423629 + MER3 DNA MER1_type 2222 2529 0 1866 118 3 70 chr15 272125 272440 -85423314 - AluSx SINE Alu -18 294 1 200 160 40 0 chr15 272461 272511 -85423243 + T-rich Low_complexity Low_complexity 5 56 0 1855 148 0 3 chr15 272545 272828 -85422926 - AluSx SINE Alu -30 282 1 23 33 0 0 chr15 273513 273543 -85422211 + AT_rich Low_complexity Low_complexity 1 30 0 383 78 0 0 chr15 274035 274086 -85421668 - Alu SINE Alu -250 52 2 2082 125 3 0 chr15 274306 274610 -85421144 - AluSx SINE Alu -7 305 1 383 271 57 62 chr15 275672 275864 -85419890 + MIR SINE MIR 2 192 -70 294 314 139 7 chr15 276806 276943 -85418811 + MIR3 SINE MIR 31 185 -23 229 164 15 75 chr15 276950 277017 -85418737 + MER39 LTR ERV1 68 130 -577 270 180 60 0 chr15 277030 277080 -85418674 + L2 LINE L2 3217 3269 -3 516 229 141 40 chr15 278680 278890 -85416864 + MIR SINE MIR 16 252 -10 222 216 39 0 chr15 279865 279916 -85415838 + MIR SINE MIR 95 147 -61 261 83 0 0 chr15 280050 280086 -85415668 + (T)n Simple_repeat Simple_repeat 1 36 0 190 241 22 0 chr15 280415 280461 -85415293 + MIR SINE MIR 103 150 -58 1735 130 0 86 chr15 281003 281327 -85414427 + AluSx SINE Alu 2 297 -15 371 257 175 6 chr15 281340 281516 -85414238 + MIR SINE MIR 45 256 -6 943 161 0 0 chr15 282271 282426 -85413328 + 7SLRNA srpRNA srpRNA 95 249 -71 25 0 0 0 chr15 287356 287381 -85408373 + AT_rich Low_complexity Low_complexity 1 25 0 1434 191 0 0 chr15 287951 288197 -85407557 - AluJo SINE Alu -66 246 1 1842 149 10 0 chr15 288240 288541 -85407213 - AluSx SINE Alu -8 304 1 314 216 77 115 chr15 289730 289820 -85405934 - L1MC5 LINE L1 -47 7914 7822 212 77 26 0 chr15 289820 289859 -85405895 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2061 110 0 0 chr15 289863 290145 -85405609 - AluSq SINE Alu -31 282 1 314 216 77 115 chr15 290145 290415 -85405339 - L1MC5 LINE L1 -142 7819 7563 185 250 143 0 chr15 290680 290736 -85405018 + MIR SINE MIR 106 169 -93 1308 172 12 86 chr15 290991 291205 -85404549 - AluJb SINE Alu 0 302 119 1371 163 42 0 chr15 291205 291325 -85404429 + AluSp SINE Alu 1 114 -199 396 0 0 0 chr15 291325 291369 -85404385 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 1371 163 42 0 chr15 291369 291531 -85404223 + AluSp SINE Alu 114 295 -18 1308 172 12 86 chr15 291531 291642 -85404112 - AluJb SINE Alu -183 119 1 1567 141 10 61 chr15 291669 291982 -85403772 + AluSp SINE Alu 1 297 -16 517 205 8 8 chr15 291993 292110 -85403644 - FLAM_C SINE Alu -16 117 1 844 85 15 0 chr15 292139 292269 -85403485 + AluSp SINE Alu 2 133 -180 1470 169 19 19 chr15 292275 292588 -85403166 + AluSp SINE Alu 1 313 0 332 167 15 0 chr15 292594 292660 -85403094 - AluJb SINE Alu -185 117 51 672 168 0 8 chr15 292691 292816 -85402938 + AluSp SINE Alu 7 130 -183 1121 113 0 59 chr15 293345 293548 -85402206 + AluSg/x SINE Alu 119 309 -1 1449 175 3 20 chr15 293560 293857 -85401897 + AluSp SINE Alu 7 298 -15 252 33 0 0 chr15 293868 293898 -85401856 - AluJb SINE Alu -185 117 88 738 220 13 48 chr15 293900 294013 -85401741 - AluJo SINE Alu -92 220 117 1634 141 0 50 chr15 294013 294332 -85401422 + AluSp SINE Alu 1 303 -10 738 220 13 48 chr15 294332 294445 -85401309 - AluJo SINE Alu -195 117 2 1843 186 49 13 chr15 294449 294836 -85400918 - LTR15 LTR ERV1 -92 401 1 233 269 60 0 chr15 295454 295521 -85400233 + L2 LINE L2 2204 2274 -1040 851 318 165 14 chr15 295697 296319 -85399435 + L2 LINE L2 2353 3068 -245 2206 74 3 7 chr15 297049 297348 -85398406 + AluY SINE Alu 1 298 -13 262 221 130 0 chr15 297365 297442 -85398312 + L1M4 LINE L1 4750 4836 -1310 669 293 25 37 chr15 297939 298260 -85397494 - L1MC4 LINE L1 -1 8041 7725 717 186 103 0 chr15 298490 298646 -85397108 - MER5A DNA MER1_type -2 187 16 2007 117 3 0 chr15 298837 299183 -85396571 + AluSx SINE Alu 1 347 0 352 248 106 33 chr15 299754 300101 -85395653 - L1P2 LINE L1 -589 5565 5174 1326 186 37 15 chr15 300210 300479 -85395275 - AluJo SINE Alu -37 275 1 790 151 68 14 chr15 301224 301370 -85394384 - MER5A DNA MER1_type -33 156 3 438 53 0 0 chr15 301756 301813 -85393941 + (TG)n Simple_repeat Simple_repeat 2 58 0 1892 132 3 10 chr15 301814 302102 -85393652 - AluSx SINE Alu -26 286 1 222 250 0 0 chr15 302626 302714 -85393040 + C-rich Low_complexity Low_complexity 2 89 0 411 301 66 0 chr15 304653 304789 -85390965 + MIR SINE MIR 48 192 -70 279 254 105 26 chr15 304926 305040 -85390714 + L2 LINE L2 3188 3310 -3 508 238 192 21 chr15 306641 306834 -85388920 + MIR SINE MIR 23 248 -14 2156 138 3 0 chr15 306973 307285 -85388469 + AluSp SINE Alu 1 313 0 226 317 195 0 chr15 307632 307755 -85387999 + MIR3 SINE MIR 53 199 -9 190 340 113 0 chr15 308097 308203 -85387551 + MER5A DNA MER1_type 24 141 -48 2375 68 0 0 chr15 308239 308556 -85387198 - AluY SINE Alu 0 317 1 523 292 0 35 chr15 308745 309239 -85386515 + GA-rich Low_complexity Low_complexity 1 476 0 350 250 150 56 chr15 309424 309993 -85385761 - L1M4 LINE L1 -3311 2835 2196 2107 102 20 23 chr15 309993 310298 -85385456 - AluSg SINE Alu 0 310 7 350 250 150 56 chr15 310298 310375 -85385379 - L1M4 LINE L1 -3950 2196 2128 1411 86 10 10 chr15 310664 310862 -85384892 + AluSg/x SINE Alu 115 312 0 767 233 87 15 chr15 310903 310993 -85384761 - AluJo SINE Alu -90 222 140 1933 125 0 20 chr15 310993 311290 -85384464 + AluSq SINE Alu 17 307 -6 767 233 87 15 chr15 311290 311405 -85384349 - AluJo SINE Alu -172 140 2 906 106 8 0 chr15 311434 311566 -85384188 + AluSp SINE Alu 1 133 -180 969 86 0 14 chr15 311709 311848 -85383906 + AluY SINE Alu 175 311 0 323 296 108 85 chr15 311974 312018 -85383736 + L1MDa LINE L1 2160 2202 -4338 2186 133 0 0 chr15 312018 312326 -85383428 + AluSx SINE Alu 1 308 -4 323 296 108 85 chr15 312326 312541 -85383213 + L1MDa LINE L1 2202 2425 -4115 1219 143 0 0 chr15 312555 312730 -85383024 + AluSg/x SINE Alu 121 295 -17 1638 191 48 18 chr15 312730 313122 -85382632 + L1MB4 LINE L1 5777 6180 0 582 212 90 59 chr15 313914 314136 -85381618 + L1MC5 LINE L1 7680 7908 -53 1886 109 4 0 chr15 314732 314989 -85380765 + AluSg SINE Alu 1 258 -52 1513 200 225 25 chr15 315000 315511 -85380243 + MER90 LTR ERV1 2 614 0 1978 169 3 3 chr15 316137 316438 -85379316 + AluJb SINE Alu 3 303 -9 274 313 23 11 chr15 316482 316627 -85379127 + L1MC3 LINE L1 6746 6873 -912 382 235 61 17 chr15 316810 316925 -85378829 + L1MC5 LINE L1 7107 7226 -735 356 286 109 11 chr15 317059 317234 -85378520 + L1MC5 LINE L1 7305 7496 -465 996 189 55 103 chr15 317241 317411 -85378343 + MLT1B LTR MaLR 4 181 -215 2343 103 7 0 chr15 317411 317713 -85378041 + AluSp SINE Alu 5 308 -5 996 189 55 103 chr15 317713 317798 -85377956 + MLT1B LTR MaLR 181 269 -127 2536 82 0 3 chr15 317798 318104 -85377650 + AluY SINE Alu 1 305 -6 996 189 55 103 chr15 318104 318262 -85377492 + MLT1B LTR MaLR 269 396 0 358 254 49 62 chr15 318267 318555 -85377199 + L1MC5 LINE L1 7494 7777 -184 204 274 333 10 chr15 319004 319106 -85376648 + L2 LINE L2 3133 3267 -5 350 274 18 0 chr15 321150 321263 -85374491 + L1ME LINE L1 348 462 -5954 226 323 51 44 chr15 321767 322026 -85373728 + L1ME LINE L1 877 1142 -5274 2456 84 7 0 chr15 322026 322334 -85373420 + AluSg SINE Alu 1 310 0 226 323 51 44 chr15 322334 322548 -85373206 + L1ME LINE L1 1142 1353 -5063 531 321 71 42 chr15 322569 322948 -85372806 + L1ME LINE L1 1228 1753 -4673 1798 128 33 56 chr15 324518 324822 -85370932 - AluSg SINE Alu -13 297 1 880 178 40 0 chr15 325147 325321 -85370433 - MER58A DNA MER1_type 0 224 44 249 124 169 11 chr15 326369 326458 -85369296 - L1ME4a LINE L1 -1 6120 6018 987 197 170 3 chr15 326580 326721 -85369033 - MER2 DNA MER2_type 0 344 228 2605 74 0 0 chr15 326721 327032 -85368722 - AluY SINE Alu 0 311 1 987 197 170 3 chr15 327032 327184 -85368570 - MER2 DNA MER2_type -116 228 2 942 138 0 80 chr15 327325 327513 -85368241 - AluSg/x SINE Alu -6 304 132 2401 88 0 0 chr15 327513 327810 -85367944 - AluY SINE Alu -12 299 3 350 258 10 0 chr15 328044 328143 -85367611 - MER5A DNA MER1_type -80 98 10 320 217 217 19 chr15 330179 330285 -85365469 + L1ME4a LINE L1 5995 6121 0 2272 86 7 13 chr15 330308 330612 -85365142 + AluSx SINE Alu 1 302 -10 2261 112 0 13 chr15 332182 332494 -85363260 - AluSg SINE Alu -2 308 1 809 141 0 0 chr15 333323 333444 -85362310 - FLAM_A SINE Alu -2 140 20 347 316 6 0 chr15 333921 334092 -85361662 + (CA)n Simple_repeat Simple_repeat 1 172 0 789 239 128 51 chr15 334921 335310 -85360444 + MLT1C LTR MaLR 3 421 -46 1414 175 80 43 chr15 335311 335723 -85360031 + MLT1C LTR MaLR 1 467 0 321 257 121 36 chr15 338772 338912 -85356842 + L1ME LINE L1 5631 5782 -339 2386 176 109 0 chr15 338914 339419 -85356335 + MER68 LTR ERV1 1 560 -2 1731 283 47 44 chr15 339427 340394 -85355360 + HERVL68 LTR ERVL 60 1117 -1920 210 183 56 0 chr15 340400 340471 -85355283 + (TA)n Simple_repeat Simple_repeat 2 76 0 198 128 0 0 chr15 340472 340511 -85355243 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 1654 148 0 44 chr15 340526 340797 -85354957 - AluJb SINE Alu -31 281 23 1358 232 56 13 chr15 340930 341392 -85354362 + L1MB5 LINE L1 2613 3094 -3052 1024 199 0 5 chr15 341392 341588 -85354166 + AluJb SINE Alu 118 312 0 1479 220 71 21 chr15 341593 341732 -85354022 + L1MB5 LINE L1 3112 3243 -2903 2270 115 0 13 chr15 341732 342045 -85353709 + AluSc SINE Alu 1 309 0 1479 220 71 21 chr15 342045 342286 -85353468 + L1MB5 LINE L1 3243 3527 -2619 2456 73 0 0 chr15 342286 342586 -85353168 + AluY SINE Alu 1 300 -11 1479 220 71 21 chr15 342586 342727 -85353027 + L1MB5 LINE L1 3527 3660 -2486 3592 196 62 59 chr15 342732 343625 -85352129 + L1MB5 LINE L1 4457 5361 -813 2394 106 0 0 chr15 343625 343936 -85351818 + AluSx SINE Alu 1 311 -1 3592 196 62 59 chr15 343936 344752 -85351002 + L1MB5 LINE L1 5361 6174 0 22 0 0 0 chr15 347182 347204 -85348550 + AT_rich Low_complexity Low_complexity 1 22 0 961 254 53 22 chr15 347374 347697 -85348057 - MER58B DNA MER1_type -5 336 4 2135 219 75 39 chr15 347851 348435 -85347319 + MER77 LTR ERV1 1 605 0 2400 85 3 0 chr15 348898 349192 -85346562 + AluSc SINE Alu 1 295 -14 286 239 119 15 chr15 351053 351187 -85344567 + MIR SINE MIR 21 168 -94 403 287 167 7 chr15 351218 351368 -85344386 + MER5A DNA MER1_type 1 174 -15 404 264 64 0 chr15 352213 352338 -85343416 + MIR3 SINE MIR 42 174 -34 274 354 28 21 chr15 353553 353697 -85342057 + L2 LINE L2 2250 2394 -920 309 304 59 59 chr15 354545 354749 -85341005 - MLT1L LTR MaLR -407 208 5 466 244 47 17 chr15 355899 356071 -85339683 + L1ME2 LINE L1 5986 6162 -2 1828 142 49 14 chr15 356091 356379 -85339375 + AluSx SINE Alu 1 298 -14 1980 95 106 0 chr15 357007 357271 -85338483 - AluSx SINE Alu -20 292 1 27 0 0 0 chr15 357284 357311 -85338443 + AT_rich Low_complexity Low_complexity 1 27 0 247 367 61 0 chr15 360638 360736 -85335018 + L2 LINE L2 3168 3271 -1 2347 92 7 0 chr15 361172 361465 -85334289 - AluSq SINE Alu -18 295 1 2001 163 0 0 chr15 361474 361763 -85333991 - AluJb SINE Alu -23 289 1 300 257 64 36 chr15 363696 363836 -85331918 + L1M4 LINE L1 2475 2618 -3528 530 216 25 133 chr15 363868 364229 -85331525 + L1M4 LINE L1 2728 3049 -3097 339 214 32 97 chr15 364283 364437 -85331317 + L1MC5 LINE L1 6957 7100 -861 461 297 46 55 chr15 364605 365043 -85330711 + L1MC5 LINE L1 7317 7750 -211 261 57 0 0 chr15 367535 367570 -85328184 + (CCCCCA)n Simple_repeat Simple_repeat 6 40 0 971 169 0 18 chr15 368695 368861 -85326893 - 7SLRNA srpRNA srpRNA -63 257 95 251 254 197 8 chr15 369567 369689 -85326065 - MIR SINE MIR -70 192 48 1984 141 0 33 chr15 369706 370012 -85325742 - AluSx SINE Alu -15 297 2 181 250 231 0 chr15 371447 371499 -85324255 - MIR SINE MIR -111 151 88 228 216 39 0 chr15 372598 372649 -85323105 - MIR SINE MIR -61 147 95 181 250 231 0 chr15 372986 373038 -85322716 - MIR SINE MIR -111 151 88 307 218 40 89 chr15 373794 373864 -85321890 - L1MC4a LINE L1 -1806 6002 5939 282 56 0 0 chr15 373864 373900 -85321854 + (CA)n Simple_repeat Simple_repeat 2 37 0 307 218 40 89 chr15 373900 373953 -85321801 - L1MC4a LINE L1 -1869 5939 5885 182 284 102 11 chr15 373983 374071 -85321683 - MIR3 SINE MIR -106 102 7 327 278 70 17 chr15 375229 375344 -85320410 - L2 LINE L2 -5 3308 3188 295 336 131 0 chr15 375364 375501 -85320253 - MIR3 SINE MIR -23 185 31 180 241 133 48 chr15 376046 376129 -85319625 - L2 LINE L2 -490 2824 2735 355 269 62 46 chr15 376479 376589 -85319165 - MIR SINE MIR -115 147 33 2309 97 7 3 chr15 376589 376887 -85318867 - AluY SINE Alu -12 299 1 355 269 62 46 chr15 376887 376906 -85318848 - MIR SINE MIR -229 33 16 211 259 0 19 chr15 379198 379252 -85316502 + (TG)n Simple_repeat Simple_repeat 2 54 0 2064 125 7 0 chr15 379571 379851 -85315903 + AluY SINE Alu 1 282 -29 33 0 0 0 chr15 379866 379899 -85315855 + AT_rich Low_complexity Low_complexity 1 33 0 589 294 230 38 chr15 379914 380330 -85315424 + L1M4 LINE L1 2908 3243 -2903 2500 59 7 13 chr15 380330 380635 -85315119 - AluY SINE Alu -8 303 1 589 294 230 38 chr15 380635 380766 -85314988 + L1M4 LINE L1 3243 3348 -2798 981 203 37 28 chr15 380766 380983 -85314771 - MER20 DNA MER1_type 0 219 1 589 294 230 38 chr15 380983 381144 -85314610 + L1M4 LINE L1 3348 3753 -2393 468 306 81 78 chr15 381367 381775 -85313979 + HAL1 LINE L1 43 451 -2056 1986 143 19 26 chr15 381938 382246 -85313508 - AluJo SINE Alu -2 310 5 2349 117 0 0 chr15 382315 382623 -85313131 + AluSp SINE Alu 1 308 -5 618 253 111 15 chr15 382641 382839 -85312915 + HAL1 LINE L1 854 1070 -1437 432 254 112 87 chr15 382857 383381 -85312373 + MLT1H1 LTR MaLR 19 555 0 863 249 127 31 chr15 383382 383895 -85311859 + HAL1 LINE L1 1069 1630 -877 254 224 0 0 chr15 383925 383974 -85311780 - MIR SINE MIR -30 232 184 351 0 0 0 chr15 383986 384025 -85311729 + (CA)n Simple_repeat Simple_repeat 2 40 0 318 148 0 0 chr15 385272 385326 -85310428 + (A)n Simple_repeat Simple_repeat 1 54 0 2334 67 37 3 chr15 385330 385627 -85310127 + AluY SINE Alu 5 311 0 1284 140 189 53 chr15 386427 386499 -85309255 - MER47A DNA MER2_type -1957 366 305 2177 108 3 7 chr15 386499 386787 -85308967 + AluSq SINE Alu 1 287 -26 207 0 0 0 chr15 386791 386814 -85308940 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 1284 140 189 53 chr15 386814 387058 -85308696 - MER47A DNA MER2_type -2020 303 1 315 275 18 37 chr15 387520 387629 -85308125 - MER5C DNA MER1_type -200 124 18 436 194 21 0 chr15 387675 387768 -85307986 + MER103 DNA DNA 51 145 -21 2454 78 0 0 chr15 388366 388660 -85307094 + AluY SINE Alu 1 294 -17 260 364 0 68 chr15 388690 388822 -85306932 - MIR SINE MIR -62 146 24 293 215 31 0 chr15 389057 389122 -85306632 + MLT1K LTR MaLR 483 549 -39 184 373 45 22 chr15 389132 389266 -85306488 + L2 LINE L2 2772 2908 -406 1844 102 82 0 chr15 389276 389532 -85306222 - AluSq SINE Alu -2 311 35 215 323 162 35 chr15 389719 389917 -85305837 + L2 LINE L2 3045 3267 -5 512 272 35 99 chr15 390290 390405 -85305349 + MIR SINE MIR 25 123 -139 1739 113 4 0 chr15 390405 390635 -85305119 + AluSx SINE Alu 58 288 -24 512 272 35 99 chr15 390635 390721 -85305033 + MIR SINE MIR 123 213 -49 279 243 307 21 chr15 390924 391064 -85304690 - L2 LINE L2 -20 3293 3114 1445 156 91 4 chr15 391409 391652 -85304102 - AluSx SINE Alu 0 312 49 7198 90 13 21 chr15 391652 392717 -85303037 + MER11C LTR ERVK 1 1057 -14 335 167 0 0 chr15 392734 392788 -85302966 - AluSx SINE Alu -248 54 1 316 303 69 27 chr15 392821 393094 -85302660 - L1ME3 LINE L1 -206 5915 5650 270 291 112 8 chr15 393151 393394 -85302360 - L1ME3 LINE L1 -769 5395 5257 350 233 124 30 chr15 393502 393656 -85302098 + L1MC4a LINE L1 5722 5901 -1907 1426 172 26 63 chr15 393656 393959 -85301795 + AluJb SINE Alu 1 292 -20 350 233 124 30 chr15 393959 394006 -85301748 + L1MC4a LINE L1 5901 5942 -1866 929 131 24 42 chr15 394007 394175 -85301579 - AluSp SINE Alu -121 192 28 2290 164 38 19 chr15 394176 394652 -85301102 + LTR15 LTR ERV1 2 486 -7 229 139 0 23 chr15 394678 394721 -85301033 - AluSp SINE Alu -260 42 1 585 176 9 9 chr15 394750 394858 -85300896 + FLAM_C SINE Alu 2 109 -34 1611 155 3 50 chr15 394865 395187 -85300567 - AluSp SINE Alu 0 313 7 790 224 13 53 chr15 395222 395336 -85300418 + AluJb SINE Alu 2 104 -208 1678 162 7 13 chr15 395336 395645 -85300109 - AluSp SINE Alu -6 307 1 790 224 13 53 chr15 395645 395758 -85299996 + AluJb SINE Alu 104 220 -92 1069 155 16 0 chr15 395794 395987 -85299767 - AluSq SINE Alu 0 313 118 367 268 87 52 chr15 396111 396187 -85299567 + L1M4 LINE L1 3602 3674 -2472 2460 82 0 7 chr15 396187 396492 -85299262 + AluY SINE Alu 5 307 -4 367 268 87 52 chr15 396492 396784 -85298970 + L1M4 LINE L1 3674 3983 -2163 2115 124 3 22 chr15 396860 397175 -85298579 + AluSg SINE Alu 1 309 -1 6723 67 7 70 chr15 397531 398956 -85296798 + SVA Other Other 339 1402 0 28 48 0 0 chr15 398975 399017 -85296737 + AT_rich Low_complexity Low_complexity 1 42 0 377 311 137 58 chr15 400827 401093 -85294661 + L1M4 LINE L1 3104 3410 -2736 2568 55 0 16 chr15 401093 401403 -85294351 - AluY SINE Alu -6 305 1 377 311 137 58 chr15 401403 401515 -85294239 + L1M4 LINE L1 3410 3512 -2634 898 221 37 28 chr15 401533 401750 -85294004 - MER20 DNA MER1_type 0 219 1 495 297 83 81 chr15 402138 402546 -85293208 + HAL1 LINE L1 43 451 -2056 2038 144 3 26 chr15 402709 403022 -85292732 - AluJo SINE Alu -2 310 5 2170 138 3 0 chr15 403091 403396 -85292358 + AluSp SINE Alu 1 306 -7 229 234 127 25 chr15 403414 403611 -85292143 + HAL1 LINE L1 854 1070 -1437 455 254 114 89 chr15 403629 404153 -85291601 + MLT1H1 LTR MaLR 19 555 0 940 256 125 27 chr15 404154 404666 -85291088 + HAL1 LINE L1 1069 1630 -877 273 204 0 0 chr15 404696 404745 -85291009 - MIR SINE MIR -30 232 184 243 0 0 0 chr15 404757 404784 -85290970 + (CA)n Simple_repeat Simple_repeat 2 28 0 2020 116 32 0 chr15 404913 405197 -85290557 + AluSx SINE Alu 1 293 -19 2341 81 0 0 chr15 405877 406174 -85289580 + AluY SINE Alu 1 297 -14 235 319 8 34 chr15 406285 406404 -85289350 + CT-rich Low_complexity Low_complexity 6 121 0 21 0 0 0 chr15 407254 407275 -85288479 + AT_rich Low_complexity Low_complexity 1 21 0 2083 124 13 0 chr15 407468 407766 -85287988 - AluSg SINE Alu -6 304 3 1795 142 68 0 chr15 407926 408080 -85287674 - AluSx SINE Alu -12 300 158 1632 90 14 0 chr15 408080 408291 -85287463 - AluSg SINE Alu -85 225 12 1795 142 68 0 chr15 408291 408417 -85287337 - AluSx SINE Alu -154 158 1 904 144 0 0 chr15 408420 408552 -85287202 - FLAM_C SINE Alu -11 132 1 833 221 47 35 chr15 408957 409215 -85286539 - MER58B DNA MER1_type -1 340 80 497 171 83 138 chr15 409445 409548 -85286206 - L1MC5 LINE L1 -44 7917 7810 2133 141 0 0 chr15 409548 409861 -85285893 - AluSq SINE Alu 0 313 1 497 171 83 138 chr15 409861 410084 -85285670 - L1MC5 LINE L1 -151 7810 7609 184 226 113 0 chr15 410400 410453 -85285301 + MIR SINE MIR 111 169 -93 1206 171 6 99 chr15 410707 410939 -85284815 - AluJb SINE Alu 0 312 121 1641 141 6 32 chr15 410939 411252 -85284502 + AluSp SINE Alu 1 305 -8 1206 171 6 99 chr15 411252 411363 -85284391 - AluJb SINE Alu -191 121 1 1677 132 9 60 chr15 411390 411708 -85284046 + AluSp SINE Alu 1 302 -11 576 181 9 9 chr15 411709 411825 -85283929 - AluJb SINE Alu -195 117 2 885 84 15 0 chr15 411854 411985 -85283769 + AluSp SINE Alu 1 133 -180 1559 152 17 20 chr15 411993 412290 -85283464 + AluSp SINE Alu 1 296 -17 541 184 74 84 chr15 412308 412378 -85283376 - AluJb SINE Alu -123 189 120 1423 142 13 58 chr15 412378 412689 -85283065 + AluSp SINE Alu 1 297 -16 541 184 74 84 chr15 412689 412808 -85282946 - AluJb SINE Alu -192 120 2 818 109 0 23 chr15 412837 412965 -85282789 + AluSp SINE Alu 1 125 -188 770 181 126 85 chr15 412977 413131 -85282623 - AluJb SINE Alu -30 282 111 1517 157 13 47 chr15 413131 413431 -85282323 + AluSp SINE Alu 7 296 -17 770 181 126 85 chr15 413431 413546 -85282208 - AluJb SINE Alu -201 111 2 1602 176 37 7 chr15 413612 413907 -85281847 - LTR15 LTR ERV1 -6 487 184 833 172 32 0 chr15 413907 414064 -85281690 + AluSq SINE Alu 132 293 -20 331 179 0 0 chr15 414067 414123 -85281631 - FLAM_A SINE Alu -20 113 58 1984 36 0 59 chr15 414732 414985 -85280769 + AluY SINE Alu 60 297 -14 1372 156 5 0 chr15 415625 415830 -85279924 - L1MC1 LINE L1 -6 6327 6122 1036 183 0 0 chr15 415936 416111 -85279643 + FRAM SINE Alu 1 174 -2 1906 63 20 4 chr15 418044 418296 -85277458 + AluY SINE Alu 46 301 -10 2389 52 0 23 chr15 419221 419529 -85276225 + AluY SINE Alu 1 301 -10 2173 94 0 13 chr15 420163 420470 -85275284 - AluY SINE Alu -8 303 1 2580 68 0 0 chr15 421204 421514 -85274240 + AluY SINE Alu 1 310 -1 21 0 0 0 chr15 421527 421548 -85274206 + AT_rich Low_complexity Low_complexity 1 21 0 312 293 146 15 chr15 422131 422153 -85273601 - L1ME3 LINE L1 -1 6163 6145 1959 213 30 34 chr15 422153 422622 -85273132 + MLT1C LTR MaLR 1 467 0 312 293 146 15 chr15 422622 422831 -85272923 - L1ME3 LINE L1 -19 6145 5910 522 266 92 14 chr15 422847 423065 -85272689 - L1ME3 LINE L1 -325 5837 5603 1548 262 50 56 chr15 423100 423219 -85272535 - L1ME3 LINE L1 0 6231 6113 2265 111 0 0 chr15 423219 423516 -85272238 + AluSq SINE Alu 1 297 -16 1548 262 50 56 chr15 423516 424059 -85271695 - L1ME3 LINE L1 -118 6113 5573 2104 102 30 13 chr15 424157 424461 -85271293 - AluSg SINE Alu -1 309 1 26 50 0 0 chr15 424469 424509 -85271245 + AT_rich Low_complexity Low_complexity 1 40 0 367 282 44 52 chr15 424796 425140 -85270614 - L1ME3 LINE L1 -2421 3794 3454 * 422 315 127 20 chr15 425123 425729 -85270025 - L1ME3 LINE L1 -4616 1780 1110 2268 109 3 0 chr15 426897 427201 -85268553 - AluSc SINE Alu -2 307 3 717 246 182 0 chr15 429106 429293 -85266461 - MER58A DNA MER1_type 0 224 4 212 222 0 16 chr15 429858 429921 -85265833 + CT-rich Low_complexity Low_complexity 1 62 0 919 248 127 74 chr15 430089 430611 -85265143 - MLT1F1 LTR MaLR -2 565 15 2477 44 7 3 chr15 432204 432500 -85263254 + AluY SINE Alu 1 297 -14 1079 133 0 76 chr15 433568 433778 -85261976 - AluSq SINE Alu -119 194 1 2215 77 18 3 chr15 434071 434357 -85261397 - AluY SINE Alu -21 290 1 183 42 0 0 chr15 434885 434909 -85260845 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1245 181 96 22 chr15 436647 436918 -85258836 + AluJo SINE Alu 5 295 -17 2657 115 3 16 chr15 437525 437891 -85257863 + THE1B LTR MaLR 2 362 -2 23 0 0 0 chr15 438023 438046 -85257708 + AT_rich Low_complexity Low_complexity 1 23 0 3773 104 28 4 chr15 438331 438830 -85256924 + MER9 LTR ERVK 1 511 0 1530 237 101 47 chr15 439009 439751 -85256003 + L1M4 LINE L1 3670 4451 -1695 1246 136 0 0 chr15 439756 439932 -85255822 - AluJb SINE Alu -131 181 6 863 74 57 0 chr15 439975 440097 -85255657 + L1MA5 LINE L1 6172 6300 0 1126 69 0 21 chr15 441775 441919 -85253835 - AluSq SINE Alu -20 293 153 400 248 85 50 chr15 441929 442070 -85253684 - MIR SINE MIR -111 151 6 1577 173 118 7 chr15 442433 442705 -85253049 - AluJb SINE Alu 0 302 1 2146 132 0 0 chr15 442814 443118 -85252636 + AluSx SINE Alu 1 304 -8 2155 124 0 0 chr15 443396 443694 -85252060 + AluSx SINE Alu 3 300 -12 234 216 0 20 chr15 443694 443745 -85252009 + L2 LINE L2 3264 3313 0 29 47 0 0 chr15 443784 443827 -85251927 + AT_rich Low_complexity Low_complexity 1 43 0 21 82 0 0 chr15 444178 444227 -85251527 + AT_rich Low_complexity Low_complexity 1 49 0 282 154 77 0 chr15 444229 444281 -85251473 - L1ME4a LINE L1 -72 6049 5994 237 275 7 14 chr15 444291 444433 -85251321 + (TA)n Simple_repeat Simple_repeat 2 142 0 2210 109 3 6 chr15 444521 444832 -85250922 + AluSx SINE Alu 1 310 -2 345 211 225 14 chr15 444832 444974 -85250780 - L1ME4a LINE L1 -303 5818 5647 331 186 100 0 chr15 444978 445048 -85250706 - L1ME4a LINE L1 -518 5603 5527 1106 268 148 21 chr15 445317 446324 -85249430 + L1ME4a LINE L1 4409 5543 -746 2364 98 0 3 chr15 446329 446635 -85249119 - AluSx SINE Alu -7 305 1 491 247 184 80 chr15 446769 447008 -85248746 + L1ME4a LINE L1 5602 5815 -306 583 138 0 0 chr15 447008 447095 -85248659 + L1MA3 LINE L1 6219 6305 0 491 247 184 80 chr15 447095 447218 -85248536 + L1ME4a LINE L1 5815 5924 -197 2075 98 0 86 chr15 447218 447545 -85248209 - AluSx SINE Alu -13 299 1 491 247 184 80 chr15 447545 447642 -85248112 + L1ME4a LINE L1 5924 6110 -11 1732 183 8 80 chr15 448164 448564 -85247190 + MLT1A2 LTR MaLR 4 374 0 1432 129 67 21 chr15 448892 449132 -85246622 + L1PB4 LINE L1 5905 6155 -1 2490 71 0 0 chr15 449141 449450 -85246304 + AluY SINE Alu 1 309 -2 23 0 0 0 chr15 449672 449695 -85246059 + AT_rich Low_complexity Low_complexity 1 23 0 364 322 104 13 chr15 449799 450175 -85245579 - L1ME4a LINE L1 -3 6118 5709 408 323 47 58 chr15 450181 450695 -85245059 + L2 LINE L2 2766 3267 -5 1978 141 33 39 chr15 451369 451731 -85244023 + MLT1A1 LTR MaLR 6 365 0 3537 164 98 1 chr15 451771 452455 -85243299 + L1MB7 LINE L1 5377 6126 -58 335 229 21 31 chr15 452472 452568 -85243186 + L1MC4 LINE L1 6609 6703 -1339 * 347 250 23 0 chr15 452534 452622 -85243132 - L1MC4 LINE L1 -1339 6703 6614 251 245 0 43 chr15 452633 452727 -85243027 + L1MC4 LINE L1 6614 6703 -1339 348 253 0 53 chr15 452729 452824 -85242930 - L1MC4 LINE L1 -1339 6703 6614 2307 92 0 19 chr15 452877 453192 -85242562 + AluSp SINE Alu 1 309 -4 2096 121 17 10 chr15 453681 453979 -85241775 + AluSx SINE Alu 1 300 -12 21 36 0 0 chr15 454069 454097 -85241657 + AT_rich Low_complexity Low_complexity 1 28 0 702 216 8 8 chr15 454109 454234 -85241520 + FLAM_C SINE Alu 3 127 -16 24 0 0 0 chr15 454336 454360 -85241394 + AT_rich Low_complexity Low_complexity 1 24 0 335 237 127 69 chr15 454687 454805 -85240949 + L1ME4a LINE L1 5743 5876 -245 2285 92 3 0 chr15 454805 455098 -85240656 + AluSp SINE Alu 1 294 -19 335 237 127 69 chr15 455098 455152 -85240602 + L1ME4a LINE L1 5876 5925 -196 2124 92 10 0 chr15 455271 455565 -85240189 + AluY SINE Alu 1 297 -14 26 30 0 0 chr15 456133 456166 -85239588 + AT_rich Low_complexity Low_complexity 1 33 0 977 61 0 0 chr15 458328 458442 -85237312 + AluY SINE Alu 1 114 -197 2344 89 0 3 chr15 458816 459119 -85236635 - AluSq SINE Alu -11 302 1 327 217 86 57 chr15 459121 459296 -85236458 + L1MC4a LINE L1 5703 5882 -1926 1837 146 4 0 chr15 460789 461064 -85234690 + AluSg SINE Alu 1 276 -34 369 149 0 0 chr15 461066 461133 -85234621 + (CGGGA)n Simple_repeat Simple_repeat 4 70 0 192 40 0 0 chr15 461155 461180 -85234574 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4478 221 54 54 chr15 461180 461989 -85233765 + L1MDa LINE L1 1483 2290 -4250 1734 161 83 9 chr15 461989 462325 -85233429 - MER46B DNA MER2_type 0 236 1 4478 221 54 54 chr15 462325 462758 -85232996 + L1MDa LINE L1 2290 2721 -3819 2102 110 28 7 chr15 462758 463049 -85232705 + AluSq SINE Alu 1 297 -16 4478 221 54 54 chr15 463049 464751 -85231003 + L1MDa LINE L1 2721 4422 -2118 357 285 89 0 chr15 465664 465787 -85229967 - MIR SINE MIR 0 262 129 2279 101 7 3 chr15 465820 466126 -85229628 - AluY SINE Alu -4 307 1 1867 96 15 33 chr15 466381 466653 -85229101 + AluSp SINE Alu 34 300 -13 2008 118 0 36 chr15 466655 466960 -85228794 + AluSq SINE Alu 1 294 -19 358 302 42 28 chr15 466993 467205 -85228549 + L1MEc LINE L1 1850 2064 -4332 772 258 144 25 chr15 467214 467582 -85228172 + L1MEc LINE L1 2215 2626 -3589 416 172 0 0 chr15 468275 468339 -85227415 - AluSq SINE Alu -15 297 234 1251 126 0 0 chr15 468339 468506 -85227248 - AluSq SINE Alu -146 167 1 2137 203 69 19 chr15 468506 469072 -85226682 + L1MEc LINE L1 2752 3345 -2870 262 350 34 0 chr15 469095 469212 -85226542 - MIR SINE MIR -1 261 141 867 184 0 13 chr15 469220 469372 -85226382 - FRAM SINE Alu -21 155 6 1333 108 0 0 chr15 469748 469924 -85225830 + AluY SINE Alu 131 306 -5 2193 110 3 13 chr15 469933 470241 -85225513 + AluSq SINE Alu 1 305 -8 1532 155 43 18 chr15 470242 470520 -85225234 + L1MB3 LINE L1 5324 5608 -572 648 237 0 0 chr15 470521 470639 -85225115 + FLAM_C SINE Alu 2 119 -24 660 137 0 0 chr15 470649 470751 -85225003 + L1MB3 LINE L1 6074 6175 -8 25 31 0 0 chr15 470751 470783 -85224971 + AT_rich Low_complexity Low_complexity 1 32 0 2430 86 0 0 chr15 471195 471496 -85224258 + AluY SINE Alu 1 301 -10 458 226 73 7 chr15 472069 472206 -85223548 - MER21B LTR ERV1 -57 806 661 588 246 17 17 chr15 472213 472392 -85223362 + L1MDa LINE L1 1541 1719 -4821 2027 169 120 2 chr15 472437 472862 -85222892 + LTR53 LTR ERVL 5 479 -40 812 209 65 13 chr15 472935 473165 -85222589 + L1ME3 LINE L1 5323 5564 -2221 297 0 0 0 chr15 473275 473308 -85222446 + (TG)n Simple_repeat Simple_repeat 1 33 0 233 269 0 0 chr15 473314 473366 -85222388 + MER58B DNA MER1_type 13 64 -277 1627 87 8 75 chr15 473411 473663 -85222091 - AluSx SINE Alu -77 235 1 972 209 42 35 chr15 473669 473928 -85221826 + MER58B DNA MER1_type 80 340 -1 1932 140 13 13 chr15 474159 474459 -85221295 + AluSg1 SINE Alu 1 300 -9 854 223 118 28 chr15 475523 475810 -85219944 + L1ME2 LINE L1 5851 6163 -1 342 0 0 0 chr15 475963 476001 -85219753 + (TG)n Simple_repeat Simple_repeat 1 38 0 28 0 0 0 chr15 476014 476042 -85219712 + AT_rich Low_complexity Low_complexity 1 28 0 436 314 147 17 chr15 476978 477060 -85218694 + L1MC4a LINE L1 5856 5926 -1882 1961 133 3 7 chr15 477060 477368 -85218386 + AluSq SINE Alu 1 307 -6 436 314 147 17 chr15 477368 477632 -85218122 + L1MC4a LINE L1 5926 6247 -1561 2115 134 3 6 chr15 477821 478134 -85217620 + AluSx SINE Alu 1 312 0 482 270 138 6 chr15 478226 478385 -85217369 + L1MD3 LINE L1 6663 6842 -1153 2381 109 0 0 chr15 478418 478729 -85217025 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr15 478762 478784 -85216970 + AT_rich Low_complexity Low_complexity 1 22 0 1513 115 5 0 chr15 479057 479265 -85216489 - AluSc SINE Alu -17 292 84 2599 56 0 0 chr15 480364 480666 -85215088 - AluY SINE Alu -9 302 1 244 263 62 0 chr15 480815 480895 -85214859 + L1ME3 LINE L1 5550 5634 -536 664 256 84 9 chr15 480898 481113 -85214641 + L1ME3 LINE L1 5733 5963 -199 21 36 0 0 chr15 481214 481242 -85214512 + AT_rich Low_complexity Low_complexity 1 28 0 234 225 122 27 chr15 482266 482399 -85213355 + MIR SINE MIR 52 203 -59 2079 137 0 0 chr15 482454 482761 -85212993 + AluSx SINE Alu 1 307 -5 2376 71 0 19 chr15 483114 483424 -85212330 - AluY SINE Alu -7 304 1 218 122 0 41 chr15 484674 484723 -85211031 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 993 220 114 32 chr15 485002 485379 -85210375 + LTR37A LTR ERV1 19 426 0 420 20 0 0 chr15 486073 486122 -85209632 + (TA)n Simple_repeat Simple_repeat 2 50 0 2182 102 0 30 chr15 486385 486688 -85209066 - AluY SINE Alu -13 298 5 306 125 0 0 chr15 486692 486740 -85209014 + (T)n Simple_repeat Simple_repeat 1 48 0 205 180 49 0 chr15 487261 487322 -85208432 + (TAA)n Simple_repeat Simple_repeat 3 66 0 28 0 0 0 chr15 487599 487627 -85208127 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr15 487883 487928 -85207826 + AT_rich Low_complexity Low_complexity 1 45 0 185 232 143 0 chr15 489055 489111 -85206643 + MIR SINE MIR 106 169 -93 1406 155 12 81 chr15 489370 489587 -85206167 - AluJo SINE Alu 0 312 124 1688 116 23 76 chr15 489587 489889 -85205865 + AluSp SINE Alu 2 287 -26 1406 155 12 81 chr15 489889 490006 -85205748 - AluJo SINE Alu -188 124 1 1749 144 13 16 chr15 490040 490346 -85205408 + AluSp SINE Alu 5 309 -4 616 179 18 9 chr15 490346 490458 -85205296 - AluJb SINE Alu -198 114 2 815 133 23 0 chr15 490489 490617 -85205137 + AluSp SINE Alu 3 133 -180 1761 147 13 19 chr15 490622 490935 -85204819 + AluSp SINE Alu 1 311 -2 685 131 9 9 chr15 490941 491048 -85204706 - AluJb SINE Alu -204 108 2 1739 145 30 13 chr15 491078 491382 -85204372 + AluSp SINE Alu 2 310 -3 372 97 194 0 chr15 491384 491456 -85204298 - AluJb SINE Alu -193 109 24 1633 218 128 2 chr15 491457 491870 -85203884 + MLT2B1 LTR ERVL 1 465 -55 1182 117 6 0 chr15 491870 492041 -85203713 + L1PA11 LINE L1 5771 5942 -232 1642 216 90 38 chr15 492044 492488 -85203266 + MLT1D LTR MaLR 39 505 0 1870 195 23 21 chr15 493087 493472 -85202282 - L1MB2 LINE L1 -8 6163 5778 315 0 0 0 chr15 493472 493507 -85202247 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 886 168 14 0 chr15 493507 493650 -85202104 - AluJb SINE Alu -30 282 138 1735 153 19 16 chr15 494133 494441 -85201313 - L1MB7 LINE L1 0 6184 5876 26 30 0 0 chr15 497467 497500 -85198254 + AT_rich Low_complexity Low_complexity 1 33 0 576 204 138 13 chr15 497543 497695 -85198059 - MIR SINE MIR -64 198 28 2034 109 13 33 chr15 497848 498151 -85197603 - AluSx SINE Alu -13 299 3 2057 141 0 0 chr15 498516 498815 -85196939 - AluSx SINE Alu -13 299 1 2401 92 0 0 chr15 499184 499488 -85196266 - AluSg SINE Alu -2 308 5 2213 262 96 10 chr15 499502 500277 -85195477 - L1ME1 LINE L1 -3 6163 5323 630 171 49 0 chr15 500353 500476 -85195278 - LTR53 LTR ERVL -40 479 351 26 30 0 0 chr15 500802 500835 -85194919 + AT_rich Low_complexity Low_complexity 1 33 0 2704 160 86 0 chr15 500835 501359 -85194395 - L1MB3 LINE L1 -8 6175 5607 2167 92 7 3 chr15 501365 501657 -85194097 - AluY SINE Alu -18 293 1 909 157 0 0 chr15 501699 501833 -85193921 - FRAM SINE Alu -25 151 18 657 218 46 6 chr15 502708 502882 -85192872 + L1ME2 LINE L1 5982 6162 -2 2220 110 3 0 chr15 502902 503202 -85192552 + AluSx SINE Alu 1 301 -11 874 160 17 66 chr15 503842 504023 -85191731 - AluSg/x SINE Alu -13 297 126 351 280 0 24 chr15 504367 504492 -85191262 + CT-rich Low_complexity Low_complexity 3 124 0 507 291 0 7 chr15 504526 505197 -85190557 + CT-rich Low_complexity Low_complexity 1 666 0 283 325 195 0 chr15 505851 505974 -85189780 - MIR3 SINE MIR -9 199 53 1344 97 0 0 chr15 506314 506490 -85189264 - AluSp SINE Alu -2 311 136 540 254 179 20 chr15 506625 506826 -85188928 - MIR SINE MIR -10 252 20 363 44 0 0 chr15 507020 507065 -85188689 + (CA)n Simple_repeat Simple_repeat 2 46 0 227 192 19 0 chr15 507069 507121 -85188633 - L1MC/D LINE L1 -1871 5937 5885 268 265 68 26 chr15 508454 508571 -85187183 - L2 LINE L2 -5 3308 3187 195 282 176 0 chr15 508568 508653 -85187101 - MIR3 SINE MIR 0 208 109 * 7247 39 0 0 chr15 508917 509862 -85185892 - L1PA4 LINE L1 -3 6152 5209 195 42 0 0 chr15 512143 512167 -85183587 + (A)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr15 512441 512467 -85183287 + AT_rich Low_complexity Low_complexity 1 26 0 655 218 69 55 chr15 514929 515131 -85180623 + MIR SINE MIR 58 262 0 25 0 0 0 chr15 515804 515829 -85179925 + AT_rich Low_complexity Low_complexity 1 25 0 2007 128 0 34 chr15 515829 516126 -85179628 - AluSx SINE Alu -25 287 1 207 0 0 0 chr15 516949 516972 -85178782 + (TG)n Simple_repeat Simple_repeat 2 24 0 2123 98 0 54 chr15 518032 518348 -85177406 + AluSg SINE Alu 1 299 -11 29 0 0 0 chr15 518733 518762 -85176992 + AT_rich Low_complexity Low_complexity 1 29 0 2017 141 0 7 chr15 518784 519083 -85176671 - AluSx SINE Alu -15 297 1 189 121 0 0 chr15 521100 521133 -85174621 + (TG)n Simple_repeat Simple_repeat 2 34 0 2371 64 0 0 chr15 521390 521699 -85174055 + AluY SINE Alu 1 309 0 902 209 43 2 chr15 522370 522576 -85173178 - MIR SINE MIR -21 241 31 2156 107 3 0 chr15 522578 522876 -85172878 - AluSx SINE Alu -13 299 1 189 171 0 0 chr15 523760 523795 -85171959 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1681 139 9 89 chr15 523796 524133 -85171621 - AluJo SINE Alu -2 310 1 2515 194 79 70 chr15 524141 525022 -85170732 - L1ME1 LINE L1 -65 6101 5223 2557 113 32 32 chr15 525022 525456 -85170298 - Tigger2a DNA MER2_type 0 434 1 2515 194 79 70 chr15 525456 525487 -85170267 - L1ME1 LINE L1 -943 5223 5194 2240 102 3 0 chr15 526024 526318 -85169436 - AluSx SINE Alu -12 300 6 24 0 0 0 chr15 526497 526521 -85169233 + AT_rich Low_complexity Low_complexity 1 24 0 417 241 7 0 chr15 527155 527296 -85168458 - L1MEd LINE L1 -5279 840 699 1020 199 80 4 chr15 527319 527545 -85168209 - L1MD3 LINE L1 -24 7971 7729 385 248 35 0 chr15 527543 527656 -85168098 - L1MEd LINE L1 -5405 714 598 * 302 269 38 17 chr15 528063 528240 -85167514 + MER58C DNA MER1_type 9 206 -9 1884 166 0 0 chr15 529149 529459 -85166295 - AluJb SINE Alu 0 310 1 242 413 51 22 chr15 531022 531160 -85164594 - L2 LINE L2 -22 3250 3109 364 279 36 36 chr15 532479 532590 -85163164 + MER91A DNA MER1_type 66 176 -20 229 266 142 9 chr15 532831 532944 -85162810 - L2 LINE L2 -1 3312 3185 2294 75 0 4 chr15 533057 533361 -85162393 - AluSc SINE Alu 0 303 1 967 198 81 102 chr15 533438 533772 -85161982 + MER58B DNA MER1_type 5 331 -10 447 290 92 22 chr15 533785 534026 -85161728 + L2 LINE L2 2770 3037 -276 440 319 81 0 chr15 534745 534905 -85160849 - MIR SINE MIR -17 245 73 244 167 10 83 chr15 535102 535198 -85160556 - L1MC4a LINE L1 -1749 6059 5971 379 211 29 0 chr15 535279 535383 -85160371 - L1MC4a LINE L1 -1853 5955 5849 215 250 15 0 chr15 535577 535645 -85160109 + CT-rich Low_complexity Low_complexity 4 72 0 1614 169 59 10 chr15 536160 536450 -85159304 - AluJb SINE Alu -8 304 1 260 296 9 28 chr15 536534 536642 -85159112 + (TCTCTG)n Simple_repeat Simple_repeat 2 107 0 729 282 55 35 chr15 536720 536975 -85158779 + MIR SINE MIR 3 262 0 2586 46 0 0 chr15 537609 537911 -85157843 - AluY SINE Alu -8 303 2 6803 32 7 3 chr15 539507 540374 -85155380 - L1PA4 LINE L1 -2 6153 5284 2023 126 11 52 chr15 541295 541643 -85154111 + MER1B DNA MER1_type 3 336 -1 319 278 97 72 chr15 541830 542261 -85153493 + HAL1b LINE L1 70 511 -837 1918 95 103 0 chr15 542579 542841 -85152913 - AluSx SINE Alu -23 289 1 315 289 123 54 chr15 542884 543586 -85152168 + L1MC/D LINE L1 3663 4412 -1734 722 205 26 19 chr15 543824 543980 -85151774 + FAM SINE Alu 2 158 -17 2509 61 0 0 chr15 544014 544309 -85151445 + AluY SINE Alu 1 295 -16 388 274 139 30 chr15 544369 544570 -85151184 + L1MC/D LINE L1 4624 4846 -1300 441 249 83 28 chr15 544895 545112 -85150642 + L1MC/D LINE L1 5254 5482 -2326 189 308 218 38 chr15 545236 545369 -85150385 + L2 LINE L2 2595 2751 -563 263 244 126 0 chr15 545434 545569 -85150185 + MER103 DNA DNA 13 164 -2 181 373 42 0 chr15 545982 546100 -85149654 - MIR SINE MIR -26 236 114 282 29 0 0 chr15 546553 546588 -85149166 + (TATG)n Simple_repeat Simple_repeat 2 36 0 2316 86 0 3 chr15 546588 546882 -85148872 - AluY SINE Alu -16 295 1 363 286 62 51 chr15 547898 548076 -85147678 + L1ME LINE L1 12 191 -5879 23 92 0 0 chr15 548233 548298 -85147456 + AT_rich Low_complexity Low_complexity 1 65 0 31 58 0 0 chr15 548429 548481 -85147273 + AT_rich Low_complexity Low_complexity 1 52 0 302 286 103 59 chr15 548722 548925 -85146829 - HAL1b LINE L1 -442 906 695 350 279 50 19 chr15 549130 549291 -85146463 - HAL1b LINE L1 -890 458 293 21 36 0 0 chr15 550431 550459 -85145295 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr15 550742 550764 -85144990 + AT_rich Low_complexity Low_complexity 1 22 0 2221 108 0 7 chr15 551023 551319 -85144435 + AluSg SINE Alu 1 294 -16 261 0 0 0 chr15 551337 551366 -85144388 + (TA)n Simple_repeat Simple_repeat 2 30 0 392 271 148 39 chr15 551931 552134 -85143620 + HAL1 LINE L1 1317 1541 -966 445 296 57 40 chr15 552153 552454 -85143300 + MER46C DNA MER2_type 3 308 -30 24 0 0 0 chr15 552642 552666 -85143088 + AT_rich Low_complexity Low_complexity 1 24 0 213 208 59 99 chr15 553142 553243 -85142511 - MIR SINE MIR -90 172 76 288 333 41 65 chr15 554248 554371 -85141383 + MIR3 SINE MIR 67 186 -22 216 135 0 0 chr15 554402 554439 -85141315 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 233 29 29 0 chr15 554439 554473 -85141281 + (TG)n Simple_repeat Simple_repeat 2 36 0 2148 134 27 3 chr15 554671 555006 -85140748 + MER61A LTR ERV1 1 343 0 1072 204 7 57 chr15 555006 555305 -85140449 + MER61A-int LTR ERV1 1 284 -4933 1349 100 0 17 chr15 555412 555592 -85140162 - AluSq SINE Alu -136 177 1 26 30 0 0 chr15 555720 555753 -85140001 + AT_rich Low_complexity Low_complexity 1 33 0 3739 151 73 9 chr15 557010 557671 -85138083 + L1PBa LINE L1 144 846 -6017 417 182 39 0 chr15 557774 557851 -85137903 + LTR22B LTR ERVK 413 492 0 2490 108 8 17 chr15 557853 558204 -85137550 + HERVK22 LTR ERVK 3 350 -6487 3787 32 0 0 chr15 558232 558674 -85137080 - L1PA2 LINE L1 0 6155 5714 4470 96 2 3 chr15 558674 559255 -85136499 - HERVK22 LTR ERVK -1327 5510 4929 1606 213 80 49 chr15 559355 559812 -85135942 + L1ME4a LINE L1 4801 5276 -890 2092 92 0 39 chr15 559812 560118 -85135636 + AluSx SINE Alu 1 294 -18 1606 213 80 49 chr15 560118 560468 -85135286 + L1ME4a LINE L1 5276 5614 -552 453 108 0 0 chr15 560570 560635 -85135119 - Alu SINE Alu -244 65 1 3455 39 34 17 chr15 561475 561940 -85133814 - L1P LINE L1 -2026 4120 3648 1401 30 0 6 chr15 561936 562104 -85133650 + L1PA4 LINE L1 5850 6016 -139 * 624 330 29 0 chr15 562492 562701 -85133053 + MER58A DNA MER1_type 6 220 -4 2185 161 39 3 chr15 562800 563186 -85132568 + MER57A LTR ERV1 1 400 -3 249 270 18 49 chr15 563470 563633 -85132121 - L1M4 LINE L1 -2296 3850 3693 9801 67 99 5 chr15 563884 565222 -85130532 - L1P LINE L1 -4683 1463 1 945 136 7 0 chr15 565223 565363 -85130391 + HERVK22 LTR ERVK 339 479 -6358 1142 137 6 0 chr15 567111 567286 -85128468 + AluSq SINE Alu 1 176 -137 1107 189 62 8 chr15 567386 567629 -85128125 - L1P LINE L1 -1762 4384 4129 2052 127 16 13 chr15 567629 567944 -85127810 - MER49 LTR ERV1 -599 324 9 2060 61 3 54 chr15 568361 568676 -85127078 - AluY SINE Alu 0 300 1 1277 143 25 94 chr15 568925 569211 -85126543 - L1M2 LINE L1 -520 5780 5515 354 287 112 79 chr15 569443 569861 -85125893 + L1ME4a LINE L1 5650 6081 -40 793 76 9 0 chr15 571479 571584 -85124170 - AluSq/x SINE Alu -205 107 2 1404 158 41 21 chr15 571624 571915 -85123839 + AluJo SINE Alu 1 297 -15 2124 64 3 71 chr15 571976 572302 -85123452 + AluY SINE Alu 1 304 -7 437 263 89 0 chr15 572340 572519 -85123235 - HAL1b LINE L1 -183 1165 971 1644 141 16 4 chr15 572527 572783 -85122971 + AluJb SINE Alu 1 259 -53 405 277 77 51 chr15 573043 573466 -85122288 - MER41E LTR ERV1 -59 453 148 220 387 106 0 chr15 573756 573898 -85121856 - L2 LINE L2 0 3272 3116 853 261 119 17 chr15 574024 574319 -85121435 + L2 LINE L2 2989 3313 0 900 269 92 68 chr15 574598 575424 -85120330 + HAL1 LINE L1 446 1291 -1216 2990 123 69 2 chr15 575494 575999 -85119755 - L1MC1 LINE L1 -1 6332 5794 216 0 0 0 chr15 576099 576123 -85119631 + (A)n Simple_repeat Simple_repeat 1 24 0 1595 113 117 25 chr15 576540 576674 -85119080 - AluSq SINE Alu -14 299 179 2433 62 0 10 chr15 576674 576982 -85118772 - AluY SINE Alu -4 307 3 1595 113 117 25 chr15 576982 577121 -85118633 - AluSq SINE Alu -134 179 1 374 247 47 40 chr15 577165 577315 -85118439 + L1MC5 LINE L1 7539 7689 -272 1607 173 43 56 chr15 577471 577659 -85118095 - L1PA16 LINE L1 -27 6139 5957 1752 120 25 11 chr15 577659 577834 -85117920 - AluJb SINE Alu -2 310 128 2384 57 0 10 chr15 577834 578133 -85117621 - AluY SINE Alu -15 296 1 1752 120 25 11 chr15 578133 578240 -85117514 - AluJb SINE Alu -184 128 24 1607 173 43 56 chr15 578240 578426 -85117328 - L1PA16 LINE L1 -209 5957 5770 22 56 0 0 chr15 578720 578756 -85116998 + AT_rich Low_complexity Low_complexity 1 36 0 2373 68 0 0 chr15 578784 579095 -85116659 - AluY SINE Alu 0 311 1 328 251 16 64 chr15 579420 579607 -85116147 + C-rich Low_complexity Low_complexity 3 180 0 267 31 0 0 chr15 579670 579702 -85116052 + (CGG)n Simple_repeat Simple_repeat 3 34 0 291 200 0 71 chr15 579840 579980 -85115774 + G-rich Low_complexity Low_complexity 4 133 0 465 206 277 37 chr15 581120 581218 -85114536 + L1MC3 LINE L1 7344 7417 -491 2057 98 7 0 chr15 581218 581514 -85114240 + AluY SINE Alu 1 298 -13 465 206 277 37 chr15 581514 581659 -85114095 + L1MC3 LINE L1 7417 7739 -169 1079 157 0 0 chr15 581770 581942 -85113812 + AluSp SINE Alu 136 307 -6 476 98 0 0 chr15 582089 582150 -85113604 - Alu SINE Alu -256 62 2 2109 78 0 0 chr15 582194 582463 -85113291 + AluY SINE Alu 30 298 -13 2023 90 65 0 chr15 583057 583347 -85112407 + AluSq SINE Alu 1 309 -4 386 77 0 0 chr15 583476 583533 -85112221 - L1PB4 LINE L1 -210 5951 5895 269 128 0 0 chr15 583534 583573 -85112181 + L1PB4 LINE L1 5954 5992 -164 483 101 0 0 chr15 583574 583643 -85112111 - MER50 LTR ERV1 -167 567 499 576 95 19 38 chr15 583740 583845 -85111909 + L1PB4 LINE L1 6053 6155 -1 238 286 18 0 chr15 584053 584109 -85111645 + L2 LINE L2 3237 3293 -20 2108 93 28 0 chr15 584109 584400 -85111354 + AluSp SINE Alu 1 299 -14 460 162 81 0 chr15 584400 584499 -85111255 + FLAM_C SINE Alu 34 140 -3 1267 130 27 45 chr15 584643 584733 -85111021 + MER50 LTR ERV1 504 594 -140 2007 122 3 0 chr15 584733 585020 -85110734 + AluSx SINE Alu 5 292 -20 1267 130 27 45 chr15 585020 585152 -85110602 + MER50 LTR ERV1 594 722 -12 1894 156 25 15 chr15 585152 585478 -85110276 + MER50-int LTR ERV1 7 335 -6870 2000 106 17 3 chr15 585533 585834 -85109920 + AluSq SINE Alu 1 305 -8 2241 77 0 10 chr15 586025 586324 -85109430 + AluY SINE Alu 1 296 -15 1941 115 14 10 chr15 586366 586661 -85109093 + AluSx SINE Alu 1 296 -16 2285 61 3 10 chr15 586661 586955 -85108799 + AluY SINE Alu 1 293 -18 1240 101 0 0 chr15 586964 587132 -85108622 + AluSg/x SINE Alu 131 298 -12 276 155 69 0 chr15 587196 587254 -85108500 + L1ME4a LINE L1 6059 6120 -1 791 189 0 0 chr15 587569 587701 -85108053 + FLAM_C SINE Alu 2 133 0 27 49 0 0 chr15 587715 587756 -85107998 + AT_rich Low_complexity Low_complexity 1 41 0 1556 145 53 18 chr15 587950 588232 -85107522 + AluJo SINE Alu 1 292 -20 230 269 0 77 chr15 588553 588631 -85107123 + MLT1G LTR MaLR 219 290 -300 1707 150 63 3 chr15 589640 589974 -85105780 - L1MB3 LINE L1 -4 6179 5826 2085 193 23 2 chr15 590033 590468 -85105286 + L1 LINE L1 4575 5018 -1128 1714 128 0 4 chr15 590468 590733 -85105021 + AluSx SINE Alu 39 302 -10 1088 133 0 12 chr15 591738 591903 -85103851 + AluSg/x SINE Alu 136 298 -14 586 149 39 0 chr15 591906 592039 -85103715 + L1M4 LINE L1 3167 3309 -2837 376 265 23 45 chr15 592036 592083 -85103671 - L1M4b LINE L1 -6717 142 95 * 198 0 0 0 chr15 592083 592105 -85103649 + (TG)n Simple_repeat Simple_repeat 1 22 0 2021 95 0 21 chr15 592105 592389 -85103365 - AluY SINE Alu -33 278 1 376 265 23 45 chr15 592389 592472 -85103282 - L1M4b LINE L1 -6762 97 14 564 266 157 4 chr15 592782 592977 -85102777 - L1MC4 LINE L1 -499 7389 7225 1817 163 0 3 chr15 592977 593271 -85102483 - AluJo SINE Alu -19 293 1 564 266 157 4 chr15 593271 593318 -85102436 - L1MC4 LINE L1 -663 7225 7037 2008 147 0 0 chr15 593406 593712 -85102042 + AluSx SINE Alu 1 306 -6 1935 127 14 0 chr15 593768 594059 -85101695 + AluSx SINE Alu 1 295 -17 2202 70 3 23 chr15 594059 594358 -85101396 + AluSp SINE Alu 1 293 -20 1793 149 14 0 chr15 595627 595922 -85099832 + AluJb SINE Alu 1 299 -13 1951 138 0 3 chr15 596671 596969 -85098785 + AluSx SINE Alu 1 297 -15 209 200 14 29 chr15 597574 597644 -85098110 + T-rich Low_complexity Low_complexity 4 72 0 297 255 71 20 chr15 597661 597759 -85097995 - LTR52 LTR ERVL -315 106 4 798 69 8 10 chr15 598555 598802 -85096952 - AluY SINE Alu -8 303 1 515 189 47 142 chr15 599042 599172 -85096582 - L1MC4 LINE L1 -10 8032 7891 968 205 85 0 chr15 599172 599372 -85096382 - MER20 DNA MER1_type -2 217 1 515 189 47 142 chr15 599372 599600 -85096154 - L1MC4 LINE L1 -151 7891 7708 1441 155 109 53 chr15 599664 599948 -85095806 + AluSx SINE Alu 1 300 -2 1731 231 55 4 chr15 599948 600399 -85095355 + L1M4 LINE L1 3672 4145 -2001 1390 74 69 0 chr15 600500 600689 -85095065 - AluSg SINE Alu -108 202 1 1868 177 42 0 chr15 602224 602558 -85093196 - MER7A DNA MER2_type 0 346 1 279 324 27 26 chr15 605912 606075 -85089679 + MIR SINE MIR 23 182 -26 1912 142 3 7 chr15 607092 607395 -85088359 + AluSx SINE Alu 1 302 -10 2122 99 3 0 chr15 607443 607750 -85088004 + AluSp SINE Alu 1 308 0 2274 97 0 3 chr15 607752 608060 -85087694 + AluSg SINE Alu 1 307 -3 1052 116 107 28 chr15 608327 608542 -85087212 - AluJo SINE Alu 0 312 81 2201 82 3 3 chr15 609043 609336 -85086418 + AluSp SINE Alu 1 293 -20 2089 220 45 6 chr15 609613 610099 -85085655 - MLT1D LTR MaLR 0 505 1 8589 60 7 10 chr15 610353 611427 -85084327 - MER11C LTR ERVK 0 1071 1 966 279 20 26 chr15 611721 612069 -85083685 - L1ME1 LINE L1 -5 6161 5816 2019 91 16 26 chr15 612075 612383 -85083371 - AluY SINE Alu -6 305 1 820 199 51 0 chr15 612383 612539 -85083215 - L1ME1 LINE L1 -475 5689 5526 1315 103 0 73 chr15 612894 613098 -85082656 - MER1B DNA MER1_type 0 339 151 355 227 76 42 chr15 613132 613251 -85082503 - MLT1H LTR MaLR 0 549 427 428 119 415 0 chr15 613359 613477 -85082277 - MLT1H LTR MaLR -382 167 1 1959 63 0 12 chr15 614112 614212 -85081542 + AluSc SINE Alu 34 134 -175 2269 70 3 13 chr15 614212 614510 -85081244 + AluSg SINE Alu 1 295 -15 1959 63 0 12 chr15 614510 614662 -85081092 + AluSc SINE Alu 134 283 -26 2183 85 7 0 chr15 614933 615238 -85080516 - AluSg SINE Alu -3 307 1 2273 67 0 0 chr15 615248 615547 -85080207 - AluY SINE Alu -12 299 1 1475 167 29 0 chr15 617128 617409 -85078345 - AluJb SINE Alu -23 289 1 2291 71 0 7 chr15 617480 617789 -85077965 - AluSx SINE Alu -5 307 1 223 273 208 26 chr15 617848 618002 -85077752 + MIR SINE MIR 81 262 0 609 234 208 19 chr15 618187 618456 -85077298 + L1MA9 LINE L1 5957 6276 -36 2239 75 7 0 chr15 618701 618996 -85076758 - AluSq SINE Alu -16 297 1 237 285 254 35 chr15 619119 619347 -85076407 + L2 LINE L2 3036 3313 0 2165 82 0 26 chr15 619546 619685 -85076069 + AluY SINE Alu 1 142 -169 2087 105 0 13 chr15 619685 619991 -85075763 + AluSg SINE Alu 1 302 -8 2165 82 0 26 chr15 619991 620154 -85075600 + AluY SINE Alu 142 295 -16 262 242 105 42 chr15 620264 620359 -85075395 + MIR SINE MIR 21 121 -87 2288 67 0 7 chr15 620360 620658 -85075096 + AluY SINE Alu 1 296 -15 949 97 8 0 chr15 620853 620987 -85074767 - AluSq/x SINE Alu -178 135 1 1983 108 18 0 chr15 621269 621555 -85074199 + AluSg SINE Alu 1 291 -19 734 239 6 12 chr15 621578 621741 -85074013 + AluJo SINE Alu 118 279 -33 204 67 0 0 chr15 621741 621771 -85073983 + (CAA)n Simple_repeat Simple_repeat 1 30 0 216 132 105 0 chr15 621921 621959 -85073795 + L2 LINE L2 3221 3262 -10 1038 202 179 22 chr15 623015 623412 -85072342 - LTR53 LTR ERVL 0 519 1 403 208 24 7 chr15 623506 623603 -85072151 + AluJ/FLAM SINE Alu 1 83 -219 2269 97 0 0 chr15 623860 624158 -85071596 + AluSg SINE Alu 1 298 -12 471 209 18 27 chr15 624158 624268 -85071486 - L1MA10 LINE L1 -4 6330 6222 1436 223 67 16 chr15 624301 624674 -85071080 - L1ME2 LINE L1 0 6164 5773 344 160 0 27 chr15 624680 624700 -85071054 - Alu SINE Alu -254 48 29 1962 115 0 36 chr15 624700 625005 -85070749 - AluSx SINE Alu -18 294 1 344 160 0 27 chr15 625005 625053 -85070701 - Alu SINE Alu -273 29 2 182 222 19 0 chr15 625093 625147 -85070607 + (TA)n Simple_repeat Simple_repeat 2 56 0 1445 222 90 41 chr15 625165 625252 -85070502 - L1ME2 LINE L1 -873 5273 5192 2131 92 0 44 chr15 625252 625424 -85070330 - AluSg SINE Alu -7 303 125 2379 76 0 0 chr15 625424 625727 -85070027 - AluY SINE Alu -8 303 1 2028 127 0 3 chr15 625727 626026 -85069728 - AluSx SINE Alu -14 298 1 2131 92 0 44 chr15 626026 626169 -85069585 - AluSg SINE Alu -183 127 1 1445 222 90 41 chr15 626169 626590 -85069164 - L1ME2 LINE L1 -954 5192 4740 2167 78 7 14 chr15 626591 626887 -85068867 - AluY SINE Alu -17 294 1 2108 111 0 0 chr15 626891 627188 -85068566 - AluSc SINE Alu -12 297 1 2011 117 3 3 chr15 627447 627745 -85068009 - AluSg SINE Alu -12 298 1 2334 93 0 0 chr15 627768 628081 -85067673 - AluSp SINE Alu 0 313 1 463 217 0 0 chr15 628380 628472 -85067282 - FLAM_A SINE Alu -12 130 39 2047 132 7 3 chr15 628527 628837 -85066917 + AluSx SINE Alu 1 311 -1 2242 70 3 13 chr15 629547 629845 -85065909 - AluY SINE Alu -16 295 1 276 191 90 34 chr15 629954 630043 -85065711 - L1MC5 LINE L1 -1 7994 7845 454 250 31 31 chr15 630258 630418 -85065336 - MLT1H LTR MaLR -292 257 98 218 287 92 46 chr15 630581 630668 -85065086 + L2 LINE L2 3182 3272 0 24 32 0 0 chr15 631477 631508 -85064246 + AT_rich Low_complexity Low_complexity 1 31 0 2137 91 3 10 chr15 632168 632465 -85063289 + AluSx SINE Alu 1 295 -17 2179 98 3 0 chr15 633358 633654 -85062100 - AluSg SINE Alu -13 297 1 2167 109 3 0 chr15 633654 633957 -85061797 - AluSx SINE Alu -7 305 2 763 177 35 91 chr15 633957 634069 -85061685 + L1M4 LINE L1 4212 4329 -1817 2190 100 3 13 chr15 634069 634378 -85061376 + AluSx SINE Alu 1 306 -6 2242 84 3 0 chr15 634386 634684 -85061070 + AluSq SINE Alu 2 300 -13 2359 70 0 10 chr15 634688 634990 -85060764 + AluY SINE Alu 1 299 -12 763 177 35 91 chr15 634990 635095 -85060659 + L1M4 LINE L1 4339 4430 -1716 409 206 0 0 chr15 635096 635164 -85060590 + AluS SINE Alu 1 68 -232 761 177 67 34 chr15 635165 635325 -85060429 + L1M4 LINE L1 5110 5280 -866 2058 106 13 3 chr15 635325 635627 -85060127 + AluSq SINE Alu 2 306 -7 761 177 67 34 chr15 635627 635675 -85060079 + L1M4 LINE L1 5280 5325 -821 2042 96 3 3 chr15 635682 635964 -85059790 + AluSx SINE Alu 1 282 -30 213 39 0 0 chr15 635964 635990 -85059764 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 287 211 30 39 chr15 636383 636473 -85059281 + MIR SINE MIR 73 164 -44 1817 169 0 10 chr15 637079 637393 -85058361 + AluJo SINE Alu 1 311 -1 2113 77 50 10 chr15 638134 638432 -85057322 - AluY SINE Alu -1 310 1 1818 271 92 2 chr15 638984 639616 -85056138 - MER20B DNA MER1_type -61 722 34 2112 92 13 10 chr15 639714 640018 -85055736 + AluSq SINE Alu 1 305 -8 2085 91 13 20 chr15 640399 640697 -85055057 + AluSp SINE Alu 1 296 -17 1036 282 35 47 chr15 640728 641132 -85054622 - L2 LINE L2 -5 3308 2910 1117 199 93 31 chr15 641149 641440 -85054314 + MLT1F LTR MaLR 21 329 -213 310 254 106 63 chr15 641459 641648 -85054106 + L1ME LINE L1 1918 2114 -4282 374 301 22 37 chr15 641817 641953 -85053801 + L1ME LINE L1 5245 5378 -837 294 197 135 16 chr15 642008 642140 -85053614 + L1ME LINE L1 5483 5644 -587 194 277 138 15 chr15 642140 642205 -85053549 + L2 LINE L2 2685 2757 -557 371 276 75 92 chr15 642254 642417 -85053337 + L2 LINE L2 3046 3205 -108 2179 81 0 33 chr15 642417 642724 -85053030 + AluSx SINE Alu 1 297 -15 371 276 75 92 chr15 642724 642799 -85052955 + L2 LINE L2 3205 3280 -33 2403 82 0 0 chr15 642823 643127 -85052627 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr15 643222 643244 -85052510 + AT_rich Low_complexity Low_complexity 1 22 0 2323 76 0 3 chr15 643380 643682 -85052072 + AluY SINE Alu 1 301 -10 2036 123 13 0 chr15 644164 644472 -85051282 + AluSx SINE Alu 1 312 0 2410 74 0 0 chr15 644549 644860 -85050894 - AluY SINE Alu 0 311 1 1885 122 40 3 chr15 645292 645588 -85050166 - AluSx SINE Alu -5 307 1 314 253 0 0 chr15 646218 646305 -85049449 - HAL1 LINE L1 -143 2364 2278 1200 239 98 27 chr15 646345 647017 -85048737 - HAL1 LINE L1 -357 2150 1527 1626 167 21 10 chr15 647017 647305 -85048449 - AluSx SINE Alu -21 291 1 1200 239 98 27 chr15 647305 647318 -85048436 - HAL1 LINE L1 -980 1527 1516 2316 84 0 0 chr15 647318 647616 -85048138 - AluSq SINE Alu -15 298 1 1200 239 98 27 chr15 647616 647898 -85047856 - HAL1 LINE L1 -991 1516 1030 1153 136 0 0 chr15 648160 648337 -85047417 - AluJb SINE Alu -2 310 134 1735 162 6 16 chr15 648337 648652 -85047102 - AluSx SINE Alu 0 312 1 239 258 0 34 chr15 648882 648971 -85046783 - L1ME LINE L1 -5687 383 298 303 330 37 18 chr15 649093 649202 -85046552 - L1ME LINE L1 -5901 169 59 319 248 15 131 chr15 649271 649408 -85046346 - HAL1 LINE L1 -1505 1002 882 2403 57 3 0 chr15 649425 649722 -85046032 - AluY SINE Alu -13 298 1 254 213 200 12 chr15 649745 649825 -85045929 - HAL1 LINE L1 -1823 684 590 313 311 105 16 chr15 649951 650141 -85045613 - HAL1 LINE L1 -2174 333 127 1052 129 13 0 chr15 650141 650296 -85045458 - AluSg/x SINE Alu -21 291 135 2398 58 0 0 chr15 650401 650693 -85045061 + AluY SINE Alu 2 293 -18 315 268 204 14 chr15 650735 650877 -85044877 + MIR SINE MIR 93 261 -1 672 172 35 48 chr15 653356 653501 -85042253 - MER106B DNA MER1_type -13 1046 904 1569 159 48 27 chr15 655514 655809 -85039945 - AluJo SINE Alu -11 301 1 356 272 136 68 chr15 656408 656702 -85039052 + L1MEd LINE L1 751 1064 -5055 781 227 194 33 chr15 656705 657205 -85038549 + MLT1E2 LTR MaLR 2 626 0 2068 87 27 50 chr15 657218 657517 -85038237 + AluSq SINE Alu 20 311 -2 430 219 8 62 chr15 657533 657661 -85038093 + L1MEd LINE L1 1083 1203 -4916 1203 176 210 0 chr15 658996 659234 -85036520 - AluSg1 SINE Alu -21 288 1 558 144 136 16 chr15 659248 659373 -85036381 + MER20 DNA MER1_type 80 219 0 254 219 0 16 chr15 659517 659581 -85036173 - MIR SINE MIR -30 232 170 426 225 81 38 chr15 660053 660213 -85035541 - L1MC5 LINE L1 -50 7911 7745 639 204 56 4 chr15 660590 660773 -85034981 + MER3 DNA MER1_type 6 179 -30 2062 122 31 0 chr15 661565 661853 -85033901 + AluSx SINE Alu 1 297 -15 2432 74 0 0 chr15 662534 662831 -85032923 + AluY SINE Alu 1 297 -14 210 324 0 45 chr15 662944 663055 -85032699 + CT-rich Low_complexity Low_complexity 4 109 0 2216 120 3 0 chr15 664129 664430 -85031324 - AluSg SINE Alu -6 304 3 1947 125 68 0 chr15 664590 664744 -85031010 - AluSx SINE Alu -12 300 158 1583 109 14 0 chr15 664744 664955 -85030799 - AluSg SINE Alu -85 225 12 1947 125 68 0 chr15 664955 665081 -85030673 - AluSx SINE Alu -154 158 1 902 152 0 0 chr15 665084 665216 -85030538 - FLAM_C SINE Alu -11 132 1 911 240 35 47 chr15 665621 665886 -85029868 - MER58B DNA MER1_type -2080 340 78 1699 103 117 43 chr15 665886 666168 -85029586 + AluSx SINE Alu 1 303 -9 911 240 35 47 chr15 666168 666244 -85029510 - MER58B DNA MER1_type -2342 78 3 184 289 142 51 chr15 666275 666472 -85029282 + MIR SINE MIR 21 235 -27 2177 139 0 0 chr15 666481 666790 -85028964 - AluSx SINE Alu -3 309 1 2416 96 0 0 chr15 667156 667458 -85028296 - AluSg SINE Alu -4 306 5 2102 269 91 6 chr15 667472 668250 -85027504 - L1ME1 LINE L1 -3 6163 5320 622 179 49 0 chr15 668323 668446 -85027308 - LTR53 LTR ERVL -40 479 351 26 30 0 0 chr15 668775 668808 -85026946 + AT_rich Low_complexity Low_complexity 1 33 0 2408 173 92 0 chr15 668808 669329 -85026425 - L1MB3 LINE L1 -8 6175 5607 2346 78 0 3 chr15 669335 669629 -85026125 - AluY SINE Alu -18 293 1 901 185 0 0 chr15 669659 669805 -85025949 - FRAM SINE Alu -13 163 18 610 225 52 6 chr15 670688 670861 -85024893 + L1ME2 LINE L1 5982 6162 -2 2226 112 3 0 chr15 670881 671177 -85024577 + AluSx SINE Alu 1 297 -15 833 173 11 62 chr15 671821 672000 -85023754 - AluSg/x SINE Alu -15 297 128 394 305 0 0 chr15 672347 672475 -85023279 + CT-rich Low_complexity Low_complexity 3 130 0 223 212 0 26 chr15 672509 672622 -85023132 + CT-rich Low_complexity Low_complexity 3 112 0 367 222 0 17 chr15 672677 672853 -85022901 + CT-rich Low_complexity Low_complexity 3 175 0 270 261 0 0 chr15 672887 673063 -85022691 + CT-rich Low_complexity Low_complexity 3 178 0 530 279 0 1 chr15 673097 674868 -85020886 + CT-rich Low_complexity Low_complexity 1 1768 0 255 324 0 0 chr15 674873 675009 -85020745 + (CTG)n Simple_repeat Simple_repeat 3 138 0 212 323 0 0 chr15 675620 675685 -85020069 - MIR SINE MIR -91 117 53 1370 101 0 0 chr15 676024 676202 -85019552 - AluSp SINE Alu 0 313 136 504 259 179 20 chr15 676335 676536 -85019218 - MIR SINE MIR -10 252 20 222 91 0 0 chr15 676730 676763 -85018991 + (CA)n Simple_repeat Simple_repeat 2 34 0 238 192 19 0 chr15 676767 676819 -85018935 - L1MC4a LINE L1 -1871 5937 5885 274 274 60 17 chr15 678152 678269 -85017485 - L2 LINE L2 -5 3308 3187 312 314 64 29 chr15 678410 678550 -85017204 - MIR SINE MIR -70 192 48 521 134 12 0 chr15 680696 680778 -85014976 + AluS SINE Alu 5 87 -225 2203 105 3 22 chr15 681129 681443 -85014311 - AluSg SINE Alu -2 308 1 611 277 80 44 chr15 681532 681799 -85013955 - L1M4 LINE L1 -2186 3960 3704 2240 112 0 3 chr15 681799 682136 -85013618 - AluY SINE Alu 0 311 3 611 277 80 44 chr15 682136 682432 -85013322 - L1M4 LINE L1 -2442 3704 3377 248 209 55 22 chr15 682456 682547 -85013207 - L1M4 LINE L1 -2869 3277 3184 660 319 69 9 chr15 682563 682996 -85012758 - L1M4 LINE L1 -3308 2838 2380 1812 231 46 104 chr15 683030 683763 -85011991 + LTR34 LTR ERV1 1 691 -8 4131 218 23 25 chr15 683854 684879 -85010875 - L1MA9 LINE L1 -30 6282 5260 1771 180 30 0 chr15 684879 685174 -85010580 - AluJb SINE Alu -8 304 1 699 153 9 0 chr15 685200 685311 -85010443 + AluSx SINE Alu 2 113 -199 1562 123 0 0 chr15 685402 685613 -85010141 + AluSx SINE Alu 92 302 -8 593 217 56 35 chr15 685632 685775 -85009979 + LTR8 LTR ERV1 1 146 -545 977 114 15 0 chr15 685869 686001 -85009753 + AluSg/x SINE Alu 159 292 -20 2165 94 42 3 chr15 686474 686760 -85008994 + AluSp SINE Alu 1 297 -16 1124 216 64 49 chr15 686962 687351 -85008403 + MSTD LTR MaLR 2 396 0 297 350 25 2 chr15 688345 688566 -85007188 + L1ME LINE L1 4882 5110 -1036 311 291 103 29 chr15 688721 688768 -85006986 + L1ME LINE L1 5268 5310 -860 2514 75 0 0 chr15 688768 689075 -85006679 + AluY SINE Alu 1 307 -4 311 291 103 29 chr15 689075 689202 -85006552 + L1ME LINE L1 5310 5455 -715 445 244 76 8 chr15 689372 689491 -85006263 - MER3 DNA MER1_type -2 207 81 252 100 0 0 chr15 689768 689808 -85005946 + (GGGTG)n Simple_repeat Simple_repeat 5 44 0 730 173 0 0 chr15 692436 692569 -85003185 + FLAM_C SINE Alu 1 133 0 1909 134 21 54 chr15 693373 693449 -85002305 - THE1C LTR MaLR 0 375 298 2558 70 0 0 chr15 693449 693751 -85002003 + AluY SINE Alu 1 302 -9 1909 134 21 54 chr15 693751 694062 -85001692 - THE1C LTR MaLR -77 298 1 7996 110 122 43 chr15 694062 695363 -85000391 - THE1C-int LTR MaLR 0 1580 150 2308 114 0 7 chr15 695363 695670 -85000084 + AluSg SINE Alu 1 305 -5 7996 110 122 43 chr15 695670 695833 -84999921 - THE1C-int LTR MaLR -1430 150 1 2029 118 55 22 chr15 695833 696196 -84999558 - THE1C LTR MaLR 0 375 1 245 200 55 0 chr15 696264 696319 -84999435 - L1ME LINE L1 -3118 3097 3040 2207 241 47 8 chr15 696356 696999 -84998755 - L1ME LINE L1 -3151 3064 2397 517 298 63 0 chr15 696999 697157 -84998597 + MER68 LTR ERV1 395 562 0 200 226 119 48 chr15 697840 697924 -84997830 + MIR SINE MIR 61 150 -112 1962 135 7 10 chr15 698363 698660 -84997094 + AluJb SINE Alu 1 296 -16 2009 133 23 13 chr15 698672 698981 -84996773 + AluSx SINE Alu 1 312 0 2093 110 7 33 chr15 699944 700244 -84995510 + AluSx SINE Alu 13 304 -8 2440 92 0 0 chr15 701055 701360 -84994394 + AluSx SINE Alu 1 305 -7 2438 93 3 3 chr15 704191 704502 -84991252 - AluSp SINE Alu -2 311 1 312 257 44 66 chr15 704648 704784 -84990970 + L1MCa LINE L1 1932 2064 -4362 1685 150 23 19 chr15 704801 704929 -84990825 - AluJo SINE Alu -45 267 141 2497 77 0 0 chr15 704929 705226 -84990528 - AluY SINE Alu -14 297 1 1685 150 23 19 chr15 705226 705363 -84990391 - AluJo SINE Alu -171 141 1 303 271 43 0 chr15 705363 705433 -84990321 - HAL1 LINE L1 -163 2344 2272 398 247 39 55 chr15 705560 705767 -84989987 + MER21B LTR ERV1 149 353 -252 227 265 13 99 chr15 705938 706089 -84989665 + MER21A LTR ERV1 622 759 -172 1037 311 111 24 chr15 706224 706837 -84988917 - L1ME LINE L1 -4981 1224 691 2223 114 0 19 chr15 706837 707145 -84988609 + AluSq SINE Alu 1 302 -11 2135 125 20 0 chr15 707391 707696 -84988058 - AluSx SINE Alu -1 311 1 704 328 97 8 chr15 707776 708148 -84987606 - L1ME LINE L1 -5937 459 55 1151 148 12 0 chr15 708169 708338 -84987416 - AluSg/x SINE Alu -9 301 131 850 223 44 50 chr15 708341 708451 -84987303 + L1MC4a LINE L1 6300 6409 -1399 1800 173 0 33 chr15 708451 708634 -84987120 - AluJb SINE Alu -16 296 125 2264 102 3 0 chr15 708634 708928 -84986826 + AluY SINE Alu 1 295 -16 1800 173 0 33 chr15 708928 709050 -84986704 - AluJb SINE Alu -187 125 1 850 223 44 50 chr15 709050 709257 -84986497 + L1MC4a LINE L1 6409 6615 -1193 2302 141 31 6 chr15 709274 709629 -84986125 + THE1B LTR MaLR 1 364 0 1977 139 14 0 chr15 709680 709960 -84985794 + AluSx SINE Alu 3 286 -26 229 105 26 0 chr15 709961 709999 -84985755 + MLT1C LTR MaLR 34 72 -395 395 22 0 0 chr15 710346 710391 -84985363 + (TC)n Simple_repeat Simple_repeat 2 46 0 1246 121 0 12 chr15 712435 712608 -84983146 + AluSg/x SINE Alu 84 254 -56 4733 220 51 22 chr15 712608 712702 -84983052 + L1M2c LINE L1 11 101 -6688 2090 102 25 3 chr15 712702 712987 -84982767 + AluY SINE Alu 1 291 -20 4733 220 51 22 chr15 712987 714058 -84981696 + L1M2c LINE L1 101 1209 -5580 21 0 0 0 chr15 714204 714225 -84981529 + GC_rich Low_complexity Low_complexity 1 21 0 762 226 90 73 chr15 715162 715239 -84980515 + L1MEc LINE L1 1978 2052 -4344 2306 92 0 3 chr15 715239 715534 -84980220 + AluSx SINE Alu 1 294 -18 762 226 90 73 chr15 715534 715835 -84979919 + L1MEc LINE L1 2052 2370 -4026 2199 119 3 3 chr15 715835 716137 -84979617 + AluSp SINE Alu 1 302 -11 762 226 90 73 chr15 716137 716292 -84979462 + L1MEc LINE L1 2370 2521 -3875 1698 109 26 4 chr15 716317 716546 -84979208 + AluSx SINE Alu 1 234 -78 1038 117 0 0 chr15 716546 716683 -84979071 + AluSp/q SINE Alu 170 306 -7 295 288 72 7 chr15 716694 716847 -84978907 + L1MEc LINE L1 2519 2681 -3534 308 261 11 0 chr15 716979 717067 -84978687 + L1MEc LINE L1 2758 2846 -3369 684 188 0 45 chr15 717070 717224 -84978530 - MER44D DNA MER2_type 0 605 459 735 190 0 0 chr15 717224 717345 -84978409 + AluSg/x SINE Alu 154 274 -36 180 0 0 0 chr15 717366 717386 -84978368 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 554 127 100 0 chr15 717386 717496 -84978258 - MER44D DNA MER2_type -138 467 347 343 185 0 0 chr15 717515 717569 -84978185 + MER44D DNA MER2_type 38 361 -248 1855 135 14 3 chr15 717591 717906 -84977848 + AluSx SINE Alu 1 318 0 338 231 0 39 chr15 717907 718011 -84977743 + L1ME3 LINE L1 97 196 -6663 * 1184 231 64 44 chr15 717981 718088 -84977666 + L1ME3 LINE L1 5605 5708 -1249 2228 120 3 0 chr15 718088 718388 -84977366 + AluSx SINE Alu 1 301 -11 1184 231 64 44 chr15 718388 718825 -84976929 + L1ME3 LINE L1 5708 6160 -797 839 188 36 80 chr15 718819 718959 -84976795 + L1ME2 LINE L1 5564 5688 -476 * 2488 87 3 0 chr15 718959 719268 -84976486 - AluSp SINE Alu -3 310 1 839 188 36 80 chr15 719268 719403 -84976351 + L1ME2 LINE L1 5688 5827 -337 1111 74 0 27 chr15 719469 719602 -84976152 + AluSg/x SINE Alu 167 297 -15 2504 87 0 3 chr15 719602 719912 -84975842 + AluY SINE Alu 1 309 -2 1111 74 0 27 chr15 719912 719927 -84975827 + AluSg/x SINE Alu 297 311 -1 536 156 44 9 chr15 719928 720040 -84975714 + L1ME3 LINE L1 6297 6407 -598 391 221 44 127 chr15 720035 720205 -84975549 + L1ME3 LINE L1 6624 6742 -231 * 2377 105 0 3 chr15 720205 720510 -84975244 + AluSx SINE Alu 1 304 -8 391 221 44 127 chr15 720510 720652 -84975102 + L1ME3 LINE L1 6742 6894 -79 485 211 8 45 chr15 720652 720785 -84974969 - MLT2C1 LTR ERVL 0 397 270 2388 90 0 10 chr15 720801 721111 -84974643 + AluSp SINE Alu 1 307 -6 1535 177 15 47 chr15 721242 721365 -84974389 + MLT1A1 LTR MaLR 38 163 -202 2692 58 0 0 chr15 721365 721674 -84974080 + AluY SINE Alu 1 309 -2 1535 177 15 47 chr15 721674 721889 -84973865 + MLT1A1 LTR MaLR 163 365 0 380 301 139 26 chr15 721891 722200 -84973554 + MLT1C LTR MaLR 72 415 -52 2492 50 0 10 chr15 722202 722500 -84973254 + AluY SINE Alu 1 295 -16 852 228 23 8 chr15 729328 729560 -84966194 - L1M3e LINE L1 -6808 681 13 2653 49 0 3 chr15 729782 730089 -84965665 + AluY SINE Alu 1 306 -5 2236 104 24 0 chr15 731204 731491 -84964263 - AluSx SINE Alu -18 294 1 1445 196 43 47 chr15 731860 732161 -84963593 - AluSx SINE Alu -12 300 1 1948 163 16 7 chr15 732441 732748 -84963006 + AluJb SINE Alu 1 310 -2 2094 143 3 0 chr15 733125 733425 -84962329 + AluSx SINE Alu 1 301 -11 1350 191 14 11 chr15 733585 733868 -84961886 - MSTB1 LTR MaLR 0 432 149 533 191 56 93 chr15 733976 734191 -84961563 - MLT1D LTR MaLR -292 213 7 * 553 256 47 21 chr15 734166 734400 -84961354 - MLT2C2 LTR ERVL -224 240 1 307 122 0 0 chr15 734402 734451 -84961303 - Ricksha DNA DNA -1703 343 295 764 169 15 0 chr15 734479 734609 -84961145 - FLAM_C SINE Alu -1 132 1 283 138 15 15 chr15 735154 735219 -84960535 + CT-rich Low_complexity Low_complexity 3 67 0 699 145 53 0 chr15 735517 735648 -84960106 + MLT1A1 LTR MaLR 228 365 0 730 264 114 25 chr15 735648 736008 -84959746 + MLT1C LTR MaLR 69 460 -7 2302 79 14 3 chr15 736037 736329 -84959425 - AluSx SINE Alu -17 295 1 3087 156 42 2 chr15 736579 737125 -84958629 - LTR24B LTR ERV1 -7 569 2 368 279 25 41 chr15 737133 737380 -84958374 + MLT2F LTR ERVL 292 614 -49 201 147 0 0 chr15 737403 737437 -84958317 + (TA)n Simple_repeat Simple_repeat 2 35 0 775 280 53 20 chr15 737489 737945 -84957809 + MLT1C-int LTR MaLR 1 606 -765 2337 90 0 0 chr15 738042 738331 -84957423 - AluSg SINE Alu -21 289 1 1325 172 121 8 chr15 738339 738462 -84957292 - AluSg SINE Alu -19 291 183 2577 73 0 13 chr15 738462 738776 -84956978 - AluSx SINE Alu 0 312 3 1325 172 121 8 chr15 738776 738908 -84956846 - AluSg SINE Alu -127 183 7 2185 123 3 7 chr15 739021 739323 -84956431 - AluSq SINE Alu -12 301 1 1090 180 60 85 chr15 739449 739765 -84955989 - L1ME1 LINE L1 -307 5859 5552 776 126 24 31 chr15 739767 739894 -84955860 + AluJo/FLAM SINE Alu 2 127 -185 1963 149 0 0 chr15 739895 740220 -84955534 + AluSx SINE Alu 1 325 0 468 117 0 0 chr15 740457 740534 -84955220 + AluS SINE Alu 229 305 -4 377 198 12 0 chr15 740544 740625 -84955129 - L1ME1 LINE L1 -598 5568 5487 * 1804 248 112 6 chr15 740623 741251 -84954503 - L1ME2 LINE L1 -54 6110 5417 1458 178 16 52 chr15 741296 741409 -84954345 + AluJb SINE Alu 1 116 -196 1939 170 0 6 chr15 741409 741721 -84954033 - AluSx SINE Alu -2 310 1 1458 178 16 52 chr15 741721 741916 -84953838 + AluJb SINE Alu 116 298 -14 397 243 195 5 chr15 742032 742114 -84953640 - L1ME2 LINE L1 -917 5229 5164 2416 94 0 0 chr15 742114 742413 -84953341 - AluSx SINE Alu -13 299 1 397 243 195 5 chr15 742413 742515 -84953239 - L1ME2 LINE L1 -982 5164 5010 2313 123 0 3 chr15 742541 742849 -84952905 - AluSg SINE Alu -3 307 1 2225 114 0 7 chr15 742967 743264 -84952490 + AluSx SINE Alu 2 296 -16 1201 155 0 0 chr15 743385 743559 -84952195 - AluJb SINE Alu -5 307 134 2228 90 17 7 chr15 743559 743848 -84951906 - AluSx SINE Alu -19 293 2 249 152 315 0 chr15 746674 746766 -84948988 + FLAM_C SINE Alu 1 121 -12 22 0 0 0 chr15 746766 746788 -84948966 + AT_rich Low_complexity Low_complexity 1 22 0 1965 57 0 0 chr15 747749 747978 -84947776 + AluY SINE Alu 1 229 -82 1384 184 123 5 chr15 747982 748363 -84947391 + Charlie4a DNA MER1_type 83 508 0 1773 208 2 45 chr15 749273 749672 -84946082 - MER77 LTR ERV1 -4 601 220 252 315 31 47 chr15 749833 749960 -84945794 + L2 LINE L2 3146 3270 -43 2167 145 9 9 chr15 750102 750439 -84945315 + MER1B DNA MER1_type 1 337 0 2242 117 0 7 chr15 750463 750762 -84944992 - AluSx SINE Alu -10 302 6 512 233 26 11 chr15 750766 750955 -84944799 - L1M4 LINE L1 -2798 3348 3157 1762 110 141 0 chr15 750968 751231 -84944523 - AluSx SINE Alu -2 300 1 1218 159 111 4 chr15 751234 751504 -84944250 - L1MCa LINE L1 -5273 1153 855 527 286 102 79 chr15 751524 751867 -84943887 - MER77 LTR ERV1 -254 351 1 669 278 170 13 chr15 751868 752236 -84943518 + L1MC/D LINE L1 5254 5710 -2098 2144 125 0 3 chr15 752236 752531 -84943223 + AluSg SINE Alu 1 294 -16 669 278 170 13 chr15 752531 752622 -84943132 + L1MC/D LINE L1 5710 5785 -2023 993 190 49 19 chr15 753248 753547 -84942207 - MER2 DNA MER2_type -2 343 1 24 53 0 0 chr15 753643 753681 -84942073 + AT_rich Low_complexity Low_complexity 1 38 0 733 125 39 55 chr15 754052 754180 -84941574 + FLAM_C SINE Alu 2 127 -16 1969 134 7 17 chr15 754197 754496 -84941258 + AluSx SINE Alu 3 298 -14 22 0 0 0 chr15 755193 755215 -84940539 + AT_rich Low_complexity Low_complexity 1 22 0 482 132 0 0 chr15 755232 755308 -84940446 + AluJ/FRAM SINE Alu 229 304 -8 582 139 0 0 chr15 755308 755394 -84940360 - MER2 DNA MER2_type -213 132 47 1485 273 50 7 chr15 755494 755956 -84939798 + L1M1 LINE L1 269 750 -6815 1293 149 69 40 chr15 755956 756232 -84939522 + LTR19A LTR ERV1 1 284 -202 9057 181 53 60 chr15 756234 756365 -84939389 + L1M1 LINE L1 2184 2314 -5251 416 174 0 14 chr15 756365 756461 -84939293 - AluS SINE Alu 0 309 227 9057 181 53 60 chr15 756461 757268 -84938486 + L1M1 LINE L1 2314 3125 -4440 1732 161 8 0 chr15 757268 757529 -84938225 + AluSx SINE Alu 35 297 -15 2470 81 0 0 chr15 757535 757832 -84937922 + AluY SINE Alu 1 297 -14 9057 181 53 60 chr15 757832 758329 -84937425 + L1M1 LINE L1 3130 3629 -3936 2128 127 10 10 chr15 758329 758637 -84937117 + AluSq SINE Alu 1 308 -5 9057 181 53 60 chr15 758637 759442 -84936312 + L1M1 LINE L1 3629 4438 -3127 1681 155 0 57 chr15 759442 759758 -84935996 + AluJb SINE Alu 1 298 -14 9057 181 53 60 chr15 759758 760989 -84934765 + L1M1 LINE L1 4438 5721 -1844 989 134 6 0 chr15 760989 761146 -84934608 + AluSx SINE Alu 1 158 -154 2044 131 3 0 chr15 768540 768845 -84926909 + AluSq SINE Alu 1 306 -7 273 185 0 62 chr15 768845 768920 -84926834 - L1M4 LINE L1 -1532 4614 4545 432 273 118 68 chr15 768951 769632 -84926122 - L1M4 LINE L1 -1665 4481 3767 1219 153 0 40 chr15 769660 769888 -84925866 - AluJo SINE Alu -9 303 85 260 285 105 40 chr15 769979 770207 -84925547 - L1M4 LINE L1 -2467 3679 3437 1336 195 36 20 chr15 770288 770590 -84925164 - AluJb SINE Alu -4 308 2 462 159 0 65 chr15 770971 771078 -84924676 - AluJb SINE Alu -3 309 210 1948 134 0 28 chr15 771089 771410 -84924344 - AluSx SINE Alu 0 312 1 25 75 0 0 chr15 771435 771488 -84924266 + AT_rich Low_complexity Low_complexity 1 53 0 2262 75 3 0 chr15 772212 772505 -84923249 - AluY SINE Alu -12 299 6 1850 139 7 14 chr15 772863 773158 -84922596 + AluJb SINE Alu 5 297 -15 24 32 0 0 chr15 773710 773741 -84922013 + AT_rich Low_complexity Low_complexity 1 31 0 31 0 0 0 chr15 774237 774268 -84921486 + AT_rich Low_complexity Low_complexity 1 31 0 540 234 98 33 chr15 774522 774706 -84921048 - L1MC4a LINE L1 -1969 5839 5644 1481 119 155 0 chr15 774708 774959 -84920795 - AluY SINE Alu -7 304 15 289 338 89 19 chr15 774982 775195 -84920559 - L1MC4a LINE L1 -2156 5652 5425 696 239 41 82 chr15 775226 775544 -84920210 - L1MD2 LINE L1 -55 6304 6000 400 253 75 29 chr15 775582 775756 -84919998 - L1MC4a LINE L1 -2373 5435 5254 889 177 51 95 chr15 776369 776579 -84919175 + L1MB2 LINE L1 5900 6091 -80 874 146 0 0 chr15 776579 776702 -84919052 + FLAM_C SINE Alu 1 123 -10 889 177 51 95 chr15 776702 776780 -84918974 + L1MB2 LINE L1 6091 6171 0 1446 177 0 71 chr15 776790 776943 -84918811 + AluJb SINE Alu 1 122 -190 1574 81 28 0 chr15 776943 777154 -84918600 + AluSg/x SINE Alu 70 286 -24 1446 177 0 71 chr15 777154 777310 -84918444 + AluJb SINE Alu 122 288 -24 2135 100 16 13 chr15 777446 777624 -84918130 - AluSg SINE Alu 0 310 129 2176 100 0 13 chr15 777624 777934 -84917820 - AluSg SINE Alu -4 306 1 2135 100 16 13 chr15 777934 778064 -84917690 - AluSg SINE Alu -181 129 1 235 196 39 0 chr15 778170 778221 -84917533 - MER94 DNA DNA -81 53 1 2140 98 10 7 chr15 778239 778544 -84917210 - AluSc SINE Alu -2 307 2 5753 112 61 6 chr15 780600 781065 -84914689 - L1MA5A LINE L1 -2 6295 5857 213 39 0 0 chr15 781065 781091 -84914663 + (TA)n Simple_repeat Simple_repeat 2 27 0 5753 112 61 6 chr15 781091 781547 -84914207 - L1MA5A LINE L1 -440 5857 5320 2148 112 0 3 chr15 781547 781850 -84913904 - AluSq SINE Alu -11 302 1 2621 155 57 38 chr15 781850 782374 -84913380 - L1M2c LINE L1 -4886 1903 1370 481 118 0 129 chr15 782375 782411 -84913343 + AluS SINE Alu 2 41 -271 1919 145 7 0 chr15 782411 782701 -84913053 - AluSx SINE Alu -20 292 1 481 118 0 129 chr15 782701 782757 -84912997 + AluS SINE Alu 41 82 -230 290 239 23 23 chr15 782857 782945 -84912809 - L1MC4a LINE L1 -1049 5097 5010 2240 89 0 13 chr15 782971 783284 -84912470 - AluSx SINE Alu -3 309 1 700 209 7 14 chr15 783287 783426 -84912328 - AluJo SINE Alu -173 139 2 1679 176 0 0 chr15 783778 784068 -84911686 - AluJb SINE Alu -22 290 1 1766 140 25 3 chr15 784289 784574 -84911180 - AluSx SINE Alu -21 291 1 2052 115 0 0 chr15 785414 785710 -84910044 - AluSx SINE Alu -16 296 1 2130 88 7 17 chr15 785713 786010 -84909744 - AluSp SINE Alu -19 294 1 470 314 136 34 chr15 786018 786429 -84909325 - L1MC5 LINE L1 -30 7931 7479 704 136 0 0 chr15 787252 787355 -84908399 - FLAM_A SINE Alu -12 130 28 1693 166 3 25 chr15 788000 788319 -84907435 - AluJo SINE Alu 0 312 1 470 314 88 18 chr15 789275 789549 -84906205 + MARNA DNA Mariner 126 418 -168 214 193 193 18 chr15 791255 791312 -84904442 - MIR SINE MIR -33 229 163 1946 66 73 4 chr15 791495 791767 -84903987 + AluY SINE Alu 2 292 -19 220 365 51 15 chr15 791790 791927 -84903827 - L2 LINE L2 0 3313 3172 899 158 0 0 chr15 792436 792569 -84903185 - FLAM_C SINE Alu 0 133 1 232 232 136 40 chr15 792609 792635 -84903119 + MIR SINE MIR 98 120 -142 2099 93 31 0 chr15 792635 792924 -84902830 - AluSq SINE Alu -15 298 1 232 232 136 40 chr15 792924 793022 -84902732 + MIR SINE MIR 120 234 -28 322 214 111 79 chr15 793459 793585 -84902169 - L1ME4a LINE L1 -32 6089 5960 2336 65 0 0 chr15 793640 793934 -84901820 - AluY SINE Alu -17 294 1 1902 136 3 10 chr15 795068 795377 -84900377 + AluSx SINE Alu 6 312 0 365 262 107 77 chr15 795708 795876 -84899878 + L1MCa LINE L1 1902 2074 -4352 2137 82 3 20 chr15 795882 796176 -84899578 - AluSq SINE Alu -24 289 1 1634 144 27 27 chr15 796201 796500 -84899254 + AluJb SINE Alu 3 301 -11 1382 130 0 0 chr15 796609 796816 -84898938 + AluSg/x SINE Alu 102 308 -2 787 267 67 16 chr15 796831 797146 -84898608 + L1MC4 LINE L1 7177 7507 -535 610 243 76 19 chr15 800053 800263 -84895491 + Charlie5 DNA MER1_type 2359 2580 -32 1428 99 5 19 chr15 801112 801325 -84894429 - AluSc SINE Alu -99 210 1 2288 81 3 3 chr15 801335 801644 -84894110 - AluY SINE Alu -2 309 1 2201 109 0 3 chr15 801691 801993 -84893761 - AluSx SINE Alu -11 301 1 2515 43 0 0 chr15 802048 802350 -84893404 - AluY SINE Alu -9 302 1 425 310 59 34 chr15 803453 803692 -84892062 - L1M4c LINE L1 -5029 1355 1111 1998 189 26 3 chr15 803709 804091 -84891663 + L1PBa LINE L1 1 391 -6472 2226 92 3 0 chr15 804104 804409 -84891345 - AluSx SINE Alu -1 311 6 21 0 0 0 chr15 805297 805318 -84890436 + AT_rich Low_complexity Low_complexity 1 21 0 596 75 0 0 chr15 805322 805402 -84890352 - L1MA1 LINE L1 0 6302 6223 2049 109 7 16 chr15 805741 806045 -84889709 - AluSx SINE Alu -11 301 1 979 106 56 0 chr15 806501 806643 -84889111 - AluSg/x SINE Alu -18 292 143 702 147 217 7 chr15 806643 806786 -84888968 + AluSc SINE Alu 132 304 -5 265 309 73 0 chr15 807346 807469 -84888285 + L1ME LINE L1 5597 5728 -393 1627 151 14 17 chr15 808222 808513 -84887241 + AluJb SINE Alu 1 290 -22 1670 164 0 36 chr15 808525 808805 -84886949 + AluJb SINE Alu 27 296 -16 2475 97 3 0 chr15 808832 809141 -84886613 + AluSx SINE Alu 1 310 -2 207 69 0 0 chr15 809191 809220 -84886534 + (A)n Simple_repeat Simple_repeat 1 29 0 879 158 168 11 chr15 810005 810195 -84885559 - AluJo SINE Alu -5 307 88 1935 117 28 24 chr15 810716 811006 -84884748 - AluJo SINE Alu -16 296 6 2388 103 0 0 chr15 811054 811356 -84884398 + AluSg SINE Alu 1 302 -8 1928 143 4 4 chr15 815326 815605 -84880149 + AluJo SINE Alu 1 279 -33 386 293 0 15 chr15 815775 815908 -84879846 + AluSq/x SINE Alu 1 131 -171 1197 154 0 16 chr15 816291 816479 -84879275 - AluJo SINE Alu -7 305 121 677 293 129 38 chr15 816993 817221 -84878533 + L1MB8 LINE L1 2900 3106 -3040 2269 112 0 10 chr15 817221 817559 -84878195 + AluSg SINE Alu 3 310 0 677 293 129 38 chr15 817559 817665 -84878089 + L1MB8 LINE L1 3106 3201 -2945 1597 106 204 4 chr15 817665 817920 -84877834 + AluSx SINE Alu 1 306 -6 677 293 129 38 chr15 817920 818001 -84877753 + L1MB8 LINE L1 3201 3354 -2792 3556 185 58 47 chr15 818004 818165 -84877589 + L1MB8 LINE L1 4784 4942 -1236 1636 234 88 47 chr15 818165 818746 -84877008 + MER77 LTR ERV1 1 605 0 3556 185 58 47 chr15 818746 818841 -84876913 + L1MB8 LINE L1 4942 5035 -1143 2385 110 0 0 chr15 818841 819142 -84876612 + AluSx SINE Alu 1 301 -11 3556 185 58 47 chr15 819142 819794 -84875960 + L1MB8 LINE L1 5035 5679 -499 1988 171 10 0 chr15 819794 820103 -84875651 + AluJo SINE Alu 1 312 0 3556 185 58 47 chr15 820103 820273 -84875481 + L1MB8 LINE L1 5679 5846 -332 2209 133 0 0 chr15 820273 820574 -84875180 + AluSx SINE Alu 1 301 -11 3556 185 58 47 chr15 820574 820850 -84874904 + L1MB8 LINE L1 5846 6151 -27 1475 164 0 0 chr15 820921 821141 -84874613 + AluJb SINE Alu 1 220 -92 352 219 68 0 chr15 821192 821265 -84874489 + MER2 DNA MER2_type 268 345 0 265 251 190 39 chr15 821276 821555 -84874199 + L1M4 LINE L1 4553 4873 -1273 233 292 11 0 chr15 821637 821726 -84874028 + L1M4 LINE L1 5043 5132 -1014 887 169 7 0 chr15 822522 822658 -84873096 + AluJo SINE Alu 1 137 -175 903 224 42 8 chr15 822882 823145 -84872609 + L1MA4 LINE L1 6027 6298 -2 1555 167 17 43 chr15 823186 823329 -84872425 + AluJo SINE Alu 1 146 -166 2459 81 0 10 chr15 823329 823639 -84872115 + AluSq SINE Alu 1 307 -6 1555 167 17 43 chr15 823639 823795 -84871959 + AluJo SINE Alu 146 292 -20 1944 69 15 15 chr15 824276 824581 -84871173 + AluY SINE Alu 42 311 0 313 213 53 75 chr15 824840 824934 -84870820 + L1MC4a LINE L1 6085 6176 -1632 2177 112 3 16 chr15 825069 825372 -84870382 + AluSq SINE Alu 1 299 -14 2363 106 0 3 chr15 825483 825785 -84869969 + AluSc SINE Alu 1 301 -8 2595 50 0 3 chr15 825785 826085 -84869669 + AluY SINE Alu 1 299 -12 1944 62 48 140 chr15 826208 826544 -84869210 + AluY SINE Alu 1 305 -6 495 280 16 0 chr15 826599 826724 -84869030 + Tigger3(Golem) DNA MER2_type 1 127 -2902 * 2223 151 17 14 chr15 826696 827112 -84868642 + Tigger3(Golem) DNA MER2_type 2277 2693 -336 216 0 0 0 chr15 827818 827842 -84867912 + (A)n Simple_repeat Simple_repeat 1 24 0 1712 185 45 0 chr15 827915 828245 -84867509 + MER7A DNA MER2_type 1 343 -3 610 246 108 10 chr15 828506 828701 -84867053 + MER58C DNA MER1_type 2 215 0 309 317 10 0 chr15 828739 828843 -84866911 - MER63 DNA MER1_type -815 246 142 2018 135 0 14 chr15 828965 829261 -84866493 - AluJo SINE Alu -16 296 5 725 184 77 41 chr15 829313 829441 -84866313 + MER3 DNA MER1_type 1 140 -69 2725 40 0 0 chr15 829441 829745 -84866009 - AluY SINE Alu -7 304 1 725 184 77 41 chr15 829745 829812 -84865942 + MER3 DNA MER1_type 140 203 -6 2653 68 3 0 chr15 830306 830616 -84865138 - AluY SINE Alu 0 311 1 2306 90 6 22 chr15 830617 830929 -84864825 - AluSc SINE Alu -2 307 1 306 286 91 74 chr15 830929 831759 -84863995 + L1ME3A LINE L1 4323 5137 -1033 1401 183 39 10 chr15 831759 832071 -84863683 + L1MA9 LINE L1 5992 6312 0 306 286 91 74 chr15 832071 832121 -84863633 + L1ME3A LINE L1 5137 5185 -985 1296 184 131 4 chr15 832121 832388 -84863366 + AluJo SINE Alu 1 301 -1 306 286 91 74 chr15 832388 832797 -84862957 + L1ME3A LINE L1 5185 5657 -513 533 330 28 1 chr15 832808 833098 -84862656 + L1ME3A LINE L1 5700 5995 -167 294 62 0 42 chr15 833623 833671 -84862083 - MADE1 DNA Mariner -1 79 34 267 326 88 42 chr15 833669 833725 -84862029 - MER3 DNA MER1_type -6 203 151 * 2329 93 3 19 chr15 833725 834035 -84861719 - AluSx SINE Alu -7 305 1 267 326 88 42 chr15 834035 834171 -84861583 - MER3 DNA MER1_type -58 151 2 1707 177 10 13 chr15 834453 834758 -84860996 + AluJo SINE Alu 1 304 -8 1831 159 6 41 chr15 834760 835075 -84860679 + AluJo SINE Alu 9 312 0 216 0 0 0 chr15 835689 835713 -84860041 + (A)n Simple_repeat Simple_repeat 1 24 0 873 266 82 43 chr15 836367 836856 -84858898 + MLT1J LTR MaLR 4 511 0 2040 124 17 7 chr15 836890 837181 -84858573 + AluSx SINE Alu 1 294 -18 1952 147 3 33 chr15 837186 837493 -84858261 - AluJo SINE Alu -14 298 1 2472 102 0 0 chr15 840088 840393 -84855361 + AluSx SINE Alu 1 305 -7 316 303 87 84 chr15 841622 841710 -84854044 + L1ME4a LINE L1 5630 5716 -405 2344 79 3 30 chr15 841710 842015 -84853739 - AluSx SINE Alu -15 297 1 316 303 87 84 chr15 842015 842157 -84853597 + L1ME4a LINE L1 5716 5856 -265 1958 145 13 7 chr15 842157 842460 -84853294 + AluJb SINE Alu 3 307 -5 316 303 87 84 chr15 842460 842491 -84853263 + L1ME4a LINE L1 5856 5885 -236 2257 117 0 0 chr15 842491 842782 -84852972 + AluSx SINE Alu 1 291 -21 316 303 87 84 chr15 842782 842841 -84852913 + L1ME4a LINE L1 5885 5953 -168 1263 239 131 40 chr15 844469 845316 -84850438 + L1MDb LINE L1 882 1761 -4779 246 251 36 84 chr15 845826 845993 -84849761 + L1MDb LINE L1 2212 2370 -4170 650 153 0 27 chr15 846001 846112 -84849642 + FLAM_A SINE Alu 22 129 -13 747 257 77 30 chr15 846125 846651 -84849103 + L1MDb LINE L1 2356 2910 -3630 1267 239 3 7 chr15 846655 846944 -84848810 + Tigger7 DNA MER2_type 4 291 -2196 968 228 199 3 chr15 846945 847252 -84848502 + Tigger7 DNA MER2_type 2121 2487 0 1730 151 46 57 chr15 848143 848510 -84847244 + L1MB3 LINE L1 5764 6126 -57 2181 104 0 20 chr15 848510 848808 -84846946 + AluSg SINE Alu 5 296 -14 1730 151 46 57 chr15 848808 848864 -84846890 + L1MB3 LINE L1 6126 6181 -2 2564 55 7 7 chr15 849906 850215 -84845539 + AluY SINE Alu 1 309 -2 716 163 205 6 chr15 850315 850481 -84845273 + MLT1B LTR MaLR 192 390 0 2096 122 38 0 chr15 852068 852355 -84843399 + AluSx SINE Alu 1 298 -14 225 108 0 0 chr15 852613 852650 -84843104 + (TG)n Simple_repeat Simple_repeat 2 38 0 1178 52 0 0 chr15 853353 853487 -84842267 + AluY SINE Alu 1 134 -177 2532 61 0 0 chr15 853487 853781 -84841973 + AluY SINE Alu 1 294 -17 2140 104 36 0 chr15 854225 854503 -84841251 - AluSq SINE Alu -10 303 16 335 313 71 47 chr15 857060 857129 -84838625 - L1MC/D LINE L1 -2303 5505 5439 2140 102 7 3 chr15 857129 857454 -84838300 - AluSx SINE Alu 0 326 1 335 313 71 47 chr15 857454 857512 -84838242 - L1MC/D LINE L1 -2369 5439 5384 1878 166 7 7 chr15 857512 857813 -84837941 - AluJb SINE Alu -11 301 1 335 313 71 47 chr15 857813 857894 -84837860 - L1MC/D LINE L1 -2424 5384 5290 2383 98 0 16 chr15 858519 858836 -84836918 - AluSp SINE Alu -1 312 1 346 237 13 0 chr15 859180 859256 -84836498 + L1MC4 LINE L1 7782 7858 -184 1971 120 56 0 chr15 859356 859627 -84836127 + AluSp SINE Alu 1 290 -23 531 0 0 0 chr15 859627 859686 -84836068 + (CATAA)n Simple_repeat Simple_repeat 2 60 0 1971 120 56 0 chr15 859686 859698 -84836056 + AluSp SINE Alu 290 300 -13 566 176 8 8 chr15 860173 860298 -84835456 - L1MA8 LINE L1 -12 6279 6155 564 127 15 8 chr15 860402 860536 -84835218 + (CA)n Simple_repeat Simple_repeat 1 135 0 325 260 57 32 chr15 860844 860967 -84834787 - MIR3 SINE MIR -50 158 33 1187 126 16 0 chr15 860984 861164 -84834590 - L1MA7 LINE L1 -315 5976 5791 315 0 0 0 chr15 861164 861199 -84834555 + (TG)n Simple_repeat Simple_repeat 2 36 0 1939 117 0 0 chr15 861306 861553 -84834201 + AluSx SINE Alu 3 249 -63 1172 214 63 0 chr15 861555 861793 -84833961 + Tigger3(Golem) DNA MER2_type 2777 3029 0 2112 150 45 18 chr15 862031 862194 -84833560 + MLT1B LTR MaLR 1 158 -232 2263 70 3 76 chr15 862194 862522 -84833232 + AluSp SINE Alu 1 304 -9 2112 150 45 18 chr15 862522 862738 -84833016 + MLT1B LTR MaLR 158 390 0 875 120 32 0 chr15 863885 864010 -84831744 + AluJo/FLAM SINE Alu 1 129 -173 2136 104 0 0 chr15 864012 864292 -84831462 + AluSx SINE Alu 32 311 -1 2344 154 42 27 chr15 864328 864736 -84831018 + MLT2D LTR ERVL 1 414 0 788 229 62 34 chr15 865733 866059 -84829695 + L1MEc LINE L1 2179 2485 -3730 3036 203 28 83 chr15 866093 866922 -84828832 + L1M4 LINE L1 4213 4981 -1165 2333 96 0 6 chr15 866922 867235 -84828519 + AluY SINE Alu 1 311 0 3036 203 28 83 chr15 867235 867384 -84828370 + L1M4 LINE L1 4981 5137 -1009 1603 167 6 63 chr15 867384 867518 -84828236 + AluJo SINE Alu 1 141 -171 2212 114 9 19 chr15 867518 867833 -84827921 + AluSp SINE Alu 1 312 -1 1603 167 6 63 chr15 867833 868015 -84827739 + AluJo SINE Alu 141 299 -13 264 54 0 0 chr15 868018 868055 -84827699 + L1M2 LINE L1 4558 4594 -1552 2380 166 7 18 chr15 868095 868281 -84827473 + L1M2 LINE L1 4563 4750 -1396 2472 78 0 3 chr15 868281 868588 -84827166 + AluSx SINE Alu 1 306 -6 2380 166 7 18 chr15 868588 868859 -84826895 + L1M2 LINE L1 4750 5015 -1131 1744 150 32 54 chr15 868859 868989 -84826765 + AluJb SINE Alu 1 132 -180 2299 103 0 0 chr15 868989 869281 -84826473 + AluSx SINE Alu 9 300 -12 1744 150 32 54 chr15 869281 869463 -84826291 + AluJb SINE Alu 132 306 -6 347 129 7 201 chr15 869466 869605 -84826149 - L1MB8 LINE L1 -140 6038 5927 962 162 6 0 chr15 869607 869786 -84825968 - L1MA6 LINE L1 -242 6058 5879 2798 140 55 2 chr15 869799 870422 -84825332 + L1M2 LINE L1 5102 5762 -529 729 157 37 30 chr15 870427 870561 -84825193 + AluJo SINE Alu 2 136 -176 2036 127 10 10 chr15 870575 870875 -84824879 + AluSx SINE Alu 1 300 -12 382 191 0 0 chr15 870932 871000 -84824754 + Tigger2 DNA MER2_type 2 69 -2649 * 2006 151 16 13 chr15 870989 871361 -84824393 + Tigger2 DNA MER2_type 2273 2645 -73 1436 62 150 0 chr15 871400 871593 -84824161 + AluSg/x SINE Alu 85 306 -6 2072 105 7 20 chr15 871600 871894 -84823860 + AluSq SINE Alu 1 290 -23 313 213 0 0 chr15 871894 871948 -84823806 + Tigger2 DNA MER2_type 2646 2702 -16 690 248 70 47 chr15 872063 872285 -84823469 - L1M4 LINE L1 -1543 4603 4388 2524 67 0 0 chr15 872285 872583 -84823171 - AluSg SINE Alu -12 298 1 690 248 70 47 chr15 872583 872615 -84823139 - L1M4 LINE L1 -1758 4388 4358 1451 169 59 53 chr15 872615 872952 -84822802 + MER44D DNA MER2_type 1 609 0 690 248 70 47 chr15 872952 872994 -84822760 - L1M4 LINE L1 -1788 4358 4299 2498 76 3 0 chr15 873045 873348 -84822406 + AluSp SINE Alu 1 304 -9 839 213 38 0 chr15 873355 873538 -84822216 - L1M4 LINE L1 -1827 4319 4130 2356 85 0 0 chr15 873680 874006 -84821748 + AluSq SINE Alu 5 330 0 304 243 30 109 chr15 874046 874197 -84821557 + L1ME LINE L1 5658 5791 -2017 2221 128 0 3 chr15 874197 874510 -84821244 + AluSx SINE Alu 1 312 0 304 243 30 109 chr15 874510 874560 -84821194 + L1ME LINE L1 5791 5843 -1965 254 167 0 0 chr15 874886 874934 -84820820 + L1ME LINE L1 5841 5888 -278 36 82 0 0 chr15 876262 876347 -84819407 + GC_rich Low_complexity Low_complexity 1 85 0 1141 219 8 4 chr15 926490 926727 -84769027 + HERVL74 LTR ERVL 1787 2024 -3661 1700 208 46 3 chr15 926729 927056 -84768698 - MLT1A1 LTR MaLR 0 365 25 1437 249 57 73 chr15 927059 927564 -84768190 - MLT-int LTR MaLR -633 1102 606 267 31 0 0 chr15 927579 927611 -84768143 + (TTCTCC)n Simple_repeat Simple_repeat 3 34 0 527 154 0 0 chr15 927611 927689 -84768065 - FRAM SINE Alu -31 145 68 3378 230 89 89 chr15 927789 928094 -84767660 + LTR35-int LTR ERV1 1655 1959 -4769 387 0 0 0 chr15 928094 928137 -84767617 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3378 230 89 89 chr15 928137 929692 -84766062 + LTR35-int LTR ERV1 1959 3513 -3215 1527 134 25 0 chr15 929692 929930 -84765824 + L1PA15 LINE L1 5914 6157 -8 3378 230 89 89 chr15 929930 929958 -84765796 + LTR35-int LTR ERV1 3513 3540 -3188 2044 119 31 0 chr15 929958 930244 -84765510 + AluSx SINE Alu 1 295 -17 3378 230 89 89 chr15 930244 930759 -84764995 + LTR35-int LTR ERV1 3540 4567 -2161 608 81 50 20 chr15 930768 930867 -84764887 - MER41B LTR ERV1 -86 549 448 1437 136 0 5 chr15 930867 931081 -84764673 - AluSq SINE Alu -19 294 82 1027 128 7 0 chr15 931081 931229 -84764525 - MER41B LTR ERV1 -182 453 305 2727 227 42 8 chr15 931243 931905 -84763849 + LTR35-int LTR ERV1 5106 5790 -541 392 166 69 97 chr15 931925 932070 -84763684 + LTR35-int LTR ERV1 5914 6054 -277 2047 167 36 44 chr15 932496 933057 -84762697 + LTR35 LTR ERV1 1 618 0 2234 241 47 2 chr15 933059 933549 -84762205 + MSTD-int LTR MaLR 1224 1735 0 786 191 111 35 chr15 933549 933874 -84761880 + MSTD LTR MaLR 1 420 -8 618 212 109 2 chr15 934079 934249 -84761505 + MER61E LTR ERV1 342 774 -20 1007 162 133 54 chr15 934289 934530 -84761224 + MER61E-int LTR ERV1 30 289 -6707 3984 245 38 40 chr15 934630 935904 -84759850 + MER61E-int LTR ERV1 479 1749 -5247 12769 167 60 63 chr15 935913 937587 -84758167 + MER61E-int LTR ERV1 2116 3339 -3657 2241 115 0 22 chr15 937587 937901 -84757853 - AluSc SINE Alu -2 307 1 12769 167 60 63 chr15 937901 939348 -84756406 + MER61E-int LTR ERV1 3339 4789 -2207 971 176 16 21 chr15 939492 939679 -84756075 + MER61E LTR ERV1 341 526 -43 1409 325 47 16 chr15 939725 940233 -84755521 + HERVL74 LTR ERVL 414 937 -4748 228 67 0 0 chr15 940370 940400 -84755354 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 8765 156 27 20 chr15 940569 940625 -84755129 + MER61E-int LTR ERV1 2479 2533 -4463 2198 136 0 0 chr15 940625 940927 -84754827 + AluSg SINE Alu 1 302 -8 8765 156 27 20 chr15 940927 942654 -84753100 + MER61E-int LTR ERV1 2533 6993 -3 251 175 0 111 chr15 942897 942960 -84752794 + MER61E LTR ERV1 99 154 -415 2639 212 16 12 chr15 943101 943663 -84752091 - MLT1A1-int LTR MaLR -1168 567 4 1595 239 28 3 chr15 943667 944022 -84751732 - MLT1A1 LTR MaLR 0 365 2 979 270 61 0 chr15 944023 944301 -84751453 + HERVL74 LTR ERVL 3130 3424 -2261 1107 243 67 13 chr15 944312 944612 -84751142 + HERVL74 LTR ERVL 3536 3851 -1834 539 70 0 0 chr15 944880 944951 -84750803 - L1PA5 LINE L1 -209 5945 5875 1149 91 0 0 chr15 945051 945194 -84750560 - AluY SINE Alu -168 143 1 771 261 147 12 chr15 945194 945528 -84750226 - L1M4 LINE L1 -938 5208 4830 331 130 0 0 chr15 945554 945608 -84750146 - L1MA5A LINE L1 -2 6295 6242 2029 142 3 3 chr15 945608 945917 -84749837 - AluSx SINE Alu -3 309 1 1982 129 3 29 chr15 945931 946242 -84749512 - AluJb SINE Alu -9 303 1 572 116 30 2 chr15 946242 946338 -84749416 - L1MC/D LINE L1 -672 5625 5520 423 138 0 0 chr15 946393 946458 -84749296 + L1MA5A LINE L1 6183 6247 -50 771 192 8 0 chr15 946467 946597 -84749157 - AluSg/x SINE Alu -49 263 133 2175 109 0 3 chr15 946597 946911 -84748843 - AluSx SINE Alu 0 313 1 2299 82 7 0 chr15 946933 947251 -84748503 - AluSg SINE Alu 0 320 1 2064 98 47 0 chr15 947787 948062 -84747692 + AluSx SINE Alu 13 300 -12 404 234 76 21 chr15 949560 949705 -84746049 - MIR SINE MIR -109 153 1 389 287 17 17 chr15 949958 950073 -84745681 - L1ME LINE L1 -441 5680 5566 2176 117 27 3 chr15 950149 950448 -84745306 - AluSx SINE Alu -6 306 1 1879 136 3 81 chr15 950455 950656 -84745098 - AluJo SINE Alu 0 312 146 2227 101 3 7 chr15 950656 950964 -84744790 - AluSg SINE Alu -3 307 1 1879 136 3 81 chr15 950964 951094 -84744660 - AluJo SINE Alu -166 146 7 236 88 0 0 chr15 951305 951339 -84744415 - Alu SINE Alu -267 34 1 780 229 28 0 chr15 951446 951625 -84744129 + MER5A DNA MER1_type 6 189 0 2223 118 0 7 chr15 951942 952246 -84743508 - AluSg SINE Alu -8 302 1 338 213 53 0 chr15 952248 952342 -84743412 - MIR SINE MIR -147 115 17 1954 143 0 17 chr15 953348 953649 -84742105 + AluJb SINE Alu 1 296 -16 1338 147 117 57 chr15 954012 954158 -84741596 + AluJo SINE Alu 1 137 -175 2227 109 24 0 chr15 954158 954452 -84741302 + AluSg SINE Alu 1 301 -9 1338 147 117 57 chr15 954452 954570 -84741184 + AluJo SINE Alu 137 281 -31 200 83 0 28 chr15 954571 954607 -84741147 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 1942 140 11 49 chr15 954717 955066 -84740688 - MER1B DNA MER1_type 0 337 2 986 188 28 0 chr15 955790 955966 -84739788 + FRAM SINE Alu 1 176 0 539 181 0 38 chr15 955975 956135 -84739619 + GA-rich Low_complexity Low_complexity 3 156 0 232 190 210 30 chr15 956418 956518 -84739236 + MLT1K LTR MaLR 125 242 -346 242 286 8 48 chr15 956677 956803 -84738951 + MLT1K LTR MaLR 457 577 -11 2321 129 0 0 chr15 957883 958194 -84737560 - AluSx SINE Alu -1 311 1 1509 169 12 0 chr15 958302 958556 -84737198 + AluJb SINE Alu 51 307 -5 1824 155 54 0 chr15 958632 958910 -84736844 + AluJo SINE Alu 3 295 -17 334 230 0 46 chr15 959001 959088 -84736666 + MLT1F1 LTR MaLR 62 144 -449 2784 84 0 0 chr15 959115 959470 -84736284 - THE1A LTR MaLR 0 355 1 445 276 125 0 chr15 959475 959627 -84736127 + MLT1F1 LTR MaLR 121 291 -276 1174 93 0 13 chr15 959628 959778 -84735976 + AluSq/x SINE Alu 2 149 -163 213 39 0 0 chr15 959800 959826 -84735928 + (A)n Simple_repeat Simple_repeat 1 26 0 864 209 141 30 chr15 959826 960089 -84735665 + MLT1F1 LTR MaLR 276 567 0 251 289 0 48 chr15 960097 960180 -84735574 - MLT1J LTR MaLR -431 80 2 542 159 23 15 chr15 960263 960395 -84735359 + CT-rich Low_complexity Low_complexity 3 135 0 833 161 23 0 chr15 960409 960539 -84735215 - FLAM_C SINE Alu 0 133 1 3216 157 11 14 chr15 960575 961137 -84734617 + LTR31 LTR ERV1 60 619 0 252 259 24 35 chr15 961144 961229 -84734525 + MIR SINE MIR 156 239 -23 221 0 35 0 chr15 961251 961280 -84734474 + (TTA)n Simple_repeat Simple_repeat 2 31 0 967 104 0 15 chr15 961280 961408 -84734346 - AluSp SINE Alu -185 128 1 2289 97 33 0 chr15 961590 961889 -84733865 - AluSx SINE Alu -1 311 3 231 287 202 0 chr15 961943 962072 -84733682 - MIR3 SINE MIR -3 205 51 1904 112 15 8 chr15 962172 962439 -84733315 + AluSx SINE Alu 33 301 -11 2329 121 0 3 chr15 963040 963353 -84732401 + AluSx SINE Alu 1 312 0 2071 122 28 0 chr15 963421 963707 -84732047 + AluSx SINE Alu 1 294 -18 1078 169 0 17 chr15 963991 964163 -84731591 + FAM SINE Alu 1 169 -6 1822 190 0 3 chr15 964225 964536 -84731218 + AluJo SINE Alu 1 310 -2 209 195 0 0 chr15 964611 964652 -84731102 + (TG)n Simple_repeat Simple_repeat 1 41 0 2409 103 0 25 chr15 964718 965038 -84730716 + AluSx SINE Alu 1 312 0 1560 39 6 0 chr15 965160 965338 -84730416 - AluY SINE Alu -132 179 1 1198 15 0 0 chr15 965376 965509 -84730245 + AluY SINE Alu 176 308 -3 2531 39 0 0 chr15 966883 967189 -84728565 - AluY SINE Alu 0 306 1 674 281 35 5 chr15 967539 967738 -84728016 + MIR SINE MIR 10 214 -48 1420 92 5 0 chr15 968102 968309 -84727445 - L1MA3 LINE L1 0 6305 6098 2408 69 0 13 chr15 968546 968852 -84726902 - AluY SINE Alu -9 302 1 27 49 0 0 chr15 969319 969360 -84726394 + AT_rich Low_complexity Low_complexity 1 41 0 2455 66 0 0 chr15 969632 969935 -84725819 - AluY SINE Alu -8 303 1 525 173 0 0 chr15 970195 970276 -84725478 + AluSg/x SINE Alu 216 296 -16 677 149 174 8 chr15 970404 970525 -84725229 + AluJo SINE Alu 2 142 -170 2093 148 0 0 chr15 970529 970820 -84724934 + AluSq SINE Alu 6 296 -17 2097 218 64 56 chr15 970911 971331 -84724423 - MER82 DNA MER2_type -3 650 235 2573 77 0 3 chr15 971331 971643 -84724111 - AluY SINE Alu 0 311 1 2134 121 10 0 chr15 971645 971935 -84723819 - AluSx SINE Alu -19 293 1 2097 218 64 56 chr15 971935 972120 -84723634 - MER82 DNA MER2_type -418 235 37 216 339 83 0 chr15 972153 972262 -84723492 - MIR3 SINE MIR -46 162 45 241 295 57 9 chr15 972588 972693 -84723061 + MIR SINE MIR 40 149 -113 2447 71 0 3 chr15 972702 972996 -84722758 - AluSc SINE Alu -16 293 1 190 222 0 0 chr15 973126 973162 -84722592 - MIR SINE MIR -59 149 114 211 252 19 107 chr15 973381 973484 -84722270 - L2 LINE L2 -1 3271 3178 1040 192 56 14 chr15 973696 973744 -84722010 + MER58A DNA MER1_type 2 47 -2373 2456 77 7 0 chr15 973744 974041 -84721713 - AluY SINE Alu -12 299 1 1040 192 56 14 chr15 974041 974206 -84721548 + MER58A DNA MER1_type 47 224 0 309 337 20 0 chr15 974208 974309 -84721445 + L2 LINE L2 3191 3293 -20 445 311 33 7 chr15 974769 974920 -84720834 + MIR SINE MIR 34 188 -74 396 269 19 31 chr15 975368 975545 -84720209 + MIR3 SINE MIR 10 183 -68 197 318 153 0 chr15 975664 975749 -84720005 - L2 LINE L2 0 3272 3175 2494 90 0 3 chr15 975839 976151 -84719603 + AluSx SINE Alu 1 311 -1 2092 107 32 0 chr15 977078 977359 -84718395 + AluSx SINE Alu 1 290 -22 495 286 0 0 chr15 977585 977697 -84718057 - MIR SINE MIR -70 192 81 408 304 122 0 chr15 977758 977906 -84717848 - MIR SINE MIR -53 209 44 1769 200 99 38 chr15 977927 978224 -84717530 - MLT1D LTR MaLR 0 505 167 2133 101 35 3 chr15 978224 978512 -84717242 + AluSx SINE Alu 1 297 -15 1769 200 99 38 chr15 978512 978690 -84717064 - MLT1D LTR MaLR -338 167 1 240 283 0 0 chr15 978690 978743 -84717011 - L2 LINE L2 -10 3262 3210 603 239 0 0 chr15 978785 978915 -84716839 - L1PB4 LINE L1 -3 6153 6024 2271 77 11 0 chr15 978941 979227 -84716527 - AluSx SINE Alu -23 289 1 2040 153 0 3 chr15 979229 979523 -84716231 - AluJb SINE Alu -18 294 2 907 160 6 12 chr15 979581 979750 -84716004 - L1PB4 LINE L1 -159 5997 5830 484 157 372 8 chr15 979750 979871 -84715883 - MER5A DNA MER1_type -8 181 17 2410 83 3 10 chr15 979873 980187 -84715567 - AluSq SINE Alu -1 312 1 335 311 0 0 chr15 980216 980306 -84715448 - MER58 DNA MER1_type -251 90 1 522 202 0 48 chr15 980308 980432 -84715322 + L2 LINE L2 3191 3308 -5 303 287 11 0 chr15 981393 981487 -84714267 - MER58 DNA MER1_type -291 95 1 1594 218 99 7 chr15 981621 982044 -84713710 - MLT1C LTR MaLR 0 467 6 1020 298 90 23 chr15 982232 982470 -84713284 + MLT1K LTR MaLR 2 223 -365 1909 122 0 57 chr15 982470 982766 -84712988 - AluSx SINE Alu -33 279 1 1020 298 90 23 chr15 982766 983048 -84712706 + MLT1K LTR MaLR 223 557 -31 1994 131 0 54 chr15 983470 983784 -84711970 + AluJo SINE Alu 1 297 -15 2197 131 13 0 chr15 984030 984336 -84711418 + AluSx SINE Alu 3 312 0 1673 175 29 4 chr15 984403 984677 -84711077 - AluJo SINE Alu -31 281 1 207 289 0 0 chr15 984830 984875 -84710879 + MIR SINE MIR 193 237 -25 1704 208 0 0 chr15 985070 985354 -84710400 - AluJb SINE Alu -28 284 1 1989 155 3 3 chr15 986151 986454 -84709300 + AluJo SINE Alu 3 305 -7 400 143 0 0 chr15 986654 986717 -84709037 - AluJ/FLAM SINE Alu -248 64 2 510 252 122 2 chr15 986718 986941 -84708813 - L1 LINE L1 -3250 2896 2645 247 176 55 33 chr15 986942 987011 -84708743 + (TATATG)n Simple_repeat Simple_repeat 4 77 -19 2092 84 0 18 chr15 987011 987286 -84708468 + AluY SINE Alu 31 300 -11 247 176 55 33 chr15 987286 987307 -84708447 + (TATATG)n Simple_repeat Simple_repeat 77 96 0 2356 71 0 49 chr15 987307 987615 -84708139 + AluY SINE Alu 1 293 -18 301 238 133 0 chr15 987617 987722 -84708032 - L1 LINE L1 -3460 2686 2568 1332 106 106 0 chr15 988692 988900 -84706854 + MER30 DNA MER1_type 1 230 0 1675 142 92 0 chr15 989883 990144 -84705610 - AluJb SINE Alu -19 293 9 908 281 128 18 chr15 991156 991445 -84704309 - L1ME2 LINE L1 -112 6052 5796 1896 162 10 3 chr15 991445 991753 -84704001 - AluJb SINE Alu 0 312 3 908 281 128 18 chr15 991753 991962 -84703792 - L1ME2 LINE L1 -368 5796 5499 2262 125 3 0 chr15 992501 992813 -84702941 - AluSp SINE Alu 0 313 1 2172 136 0 0 chr15 992833 993135 -84702619 - AluSx SINE Alu -10 302 1 208 100 0 143 chr15 993894 993964 -84701790 + (GGGTG)n Simple_repeat Simple_repeat 4 63 0 232 203 51 38 chr15 994672 994751 -84701003 + Charlie5 DNA MER1_type 45 124 -2488 * 986 255 3 10 chr15 994732 995042 -84700712 + Charlie5 DNA MER1_type 2222 2529 -83 469 169 0 12 chr15 995042 995125 -84700629 - AluJb SINE Alu -18 294 213 492 233 33 0 chr15 995222 995342 -84700412 + MIR3 SINE MIR 51 174 -34 503 62 0 25 chr15 995716 995797 -84699957 + Alu SINE Alu 232 310 -2 1544 121 159 8 chr15 996414 996671 -84699083 - AluSx SINE Alu -5 297 2 201 74 0 0 chr15 996698 996725 -84699029 + (T)n Simple_repeat Simple_repeat 1 27 0 453 306 2 4 chr15 997099 997623 -84698131 + CT-rich Low_complexity Low_complexity 1 523 0 421 299 0 0 chr15 997651 997973 -84697781 + CT-rich Low_complexity Low_complexity 1 322 0 427 294 0 22 chr15 998042 998226 -84697528 + CT-rich Low_complexity Low_complexity 1 180 0 486 314 1 17 chr15 998298 998910 -84696844 + CT-rich Low_complexity Low_complexity 1 602 0 219 317 195 0 chr15 999463 999586 -84696168 - MIR3 SINE MIR -9 199 53 1209 117 17 22 chr15 999925 1000104 -84695650 - AluSp SINE Alu 0 313 136 547 260 157 20 chr15 1000239 1000443 -84695311 - MIR SINE MIR -10 252 21 261 83 0 0 chr15 1000637 1000673 -84695081 + (CA)n Simple_repeat Simple_repeat 2 37 0 318 261 67 25 chr15 1002064 1002183 -84693571 - L2 LINE L2 -3 3310 3187 205 282 176 0 chr15 1002180 1002265 -84693489 - MIR3 SINE MIR 0 208 109 * 375 293 64 29 chr15 1002323 1002463 -84693291 - MIR SINE MIR -70 192 48 695 92 0 0 chr15 1004958 1005045 -84690709 + AluS SINE Alu 1 87 -226 2518 77 0 0 chr15 1005160 1005458 -84690296 + AluSg SINE Alu 1 298 -12 2206 107 0 13 chr15 1005708 1006016 -84689738 - AluSc SINE Alu -5 304 1 401 256 60 53 chr15 1006106 1006391 -84689363 - L1M4 LINE L1 -2186 3960 3674 2536 63 0 3 chr15 1006397 1006698 -84689056 - AluY SINE Alu -11 300 1 201 241 35 0 chr15 1006903 1006961 -84688793 + (TA)n Simple_repeat Simple_repeat 2 61 0 937 10 0 0 chr15 1007629 1007733 -84688021 - AluYa5/8 SINE Alu -3 307 204 2529 58 0 0 chr15 1007735 1008029 -84687725 - AluY SINE Alu -17 294 1 348 186 0 0 chr15 1008146 1008205 -84687549 - Tigger3(Golem) DNA MER2_type -1 3028 2970 805 176 85 0 chr15 1008241 1008394 -84687360 - FRAM SINE Alu -10 166 1 1967 138 233 2 chr15 1008396 1008830 -84686924 - Tigger3(Golem) DNA MER2_type -53 2976 2443 1853 149 11 3 chr15 1009281 1009563 -84686191 - AluJb SINE Alu -20 292 9 264 217 87 0 chr15 1009740 1009809 -84685945 - MIR SINE MIR -26 236 162 1886 163 17 0 chr15 1009809 1010109 -84685645 - AluJb SINE Alu -7 305 1 604 137 0 20 chr15 1010439 1010541 -84685213 - FLAM_A SINE Alu 0 142 43 315 49 0 0 chr15 1011061 1011102 -84684652 + (CA)n Simple_repeat Simple_repeat 1 41 0 459 255 57 14 chr15 1012238 1012379 -84683375 - MIR SINE MIR -66 196 50 1708 147 20 14 chr15 1014199 1014491 -84681263 + AluJo SINE Alu 1 294 -18 365 100 0 17 chr15 1014491 1014551 -84681203 + (GGGA)n Simple_repeat Simple_repeat 3 61 0 3795 212 36 42 chr15 1014579 1014830 -84680924 + L1ME1 LINE L1 4947 5198 -968 2233 85 0 7 chr15 1014830 1015136 -84680618 + AluSg SINE Alu 1 304 -6 3795 212 36 42 chr15 1015136 1016114 -84679640 + L1ME1 LINE L1 5198 6161 -5 1581 100 129 30 chr15 1017704 1017975 -84677779 - AluSg SINE Alu -12 298 1 228 313 102 16 chr15 1018149 1018277 -84677477 + MIR SINE MIR 111 249 -13 2062 116 0 0 chr15 1018436 1018730 -84677024 - AluSq SINE Alu -18 295 2 200 206 0 0 chr15 1019394 1019428 -84676326 + polypyrimidine Low_complexity Low_complexity 3 36 0 24 32 0 0 chr15 1019628 1019659 -84676095 + AT_rich Low_complexity Low_complexity 1 31 0 1399 180 36 46 chr15 1019925 1020231 -84675523 - AluJo SINE Alu -9 303 1 208 233 11 111 chr15 1021950 1022040 -84673714 + L2 LINE L2 3190 3270 -2 27 0 0 0 chr15 1022614 1022641 -84673113 + AT_rich Low_complexity Low_complexity 1 27 0 1428 183 29 7 chr15 1023376 1023649 -84672105 + LTR15 LTR ERV1 209 487 -6 545 207 9 9 chr15 1023715 1023831 -84671923 + AluJb SINE Alu 2 117 -195 1514 157 3 35 chr15 1023832 1024145 -84671609 - AluSp SINE Alu -10 303 1 392 125 16 0 chr15 1024171 1024235 -84671519 + AluJb SINE Alu 52 116 -186 1534 157 9 46 chr15 1024237 1024561 -84671193 - AluSp SINE Alu -1 312 1 836 105 8 8 chr15 1024567 1024700 -84671054 - AluSp SINE Alu -180 133 1 577 179 8 8 chr15 1024728 1024845 -84670909 + FLAM_C SINE Alu 1 117 -16 1608 131 13 33 chr15 1024852 1025158 -84670596 - AluSp SINE Alu -13 300 1 1298 173 12 80 chr15 1025185 1025296 -84670458 + AluJb SINE Alu 1 118 -184 1568 149 7 23 chr15 1025296 1025604 -84670150 - AluSp SINE Alu -10 303 1 1298 173 12 80 chr15 1025604 1025816 -84669938 + AluJb SINE Alu 118 302 0 413 191 75 125 chr15 1026437 1026656 -84669098 + L1MC5 LINE L1 7609 7809 -152 2039 135 0 6 chr15 1026656 1026968 -84668786 + AluSq SINE Alu 1 310 -3 413 191 75 125 chr15 1026968 1027068 -84668686 + L1MC5 LINE L1 7809 7912 -49 433 318 112 52 chr15 1027725 1028011 -84667743 + L1ME4a LINE L1 5621 5923 -198 1657 150 7 7 chr15 1028235 1028515 -84667239 + AluSx SINE Alu 1 280 -32 222 37 0 0 chr15 1028518 1028545 -84667209 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1306 208 0 4 chr15 1028585 1028830 -84666924 + AluJo SINE Alu 1 244 -68 43 56 0 0 chr15 1029571 1029642 -84666112 + AT_rich Low_complexity Low_complexity 1 71 0 21 36 0 0 chr15 1030099 1030127 -84665627 + AT_rich Low_complexity Low_complexity 1 28 0 261 57 0 0 chr15 1033370 1033405 -84662349 + (CCCCCA)n Simple_repeat Simple_repeat 6 40 0 965 155 0 0 chr15 1034546 1034701 -84661053 - 7SLRNA srpRNA srpRNA -71 249 95 371 257 175 6 chr15 1035457 1035633 -84660121 - MIR SINE MIR -6 256 45 1720 133 0 86 chr15 1035646 1035970 -84659784 - AluSx SINE Alu -15 297 2 190 241 22 0 chr15 1036512 1036558 -84659196 - MIR SINE MIR -58 150 103 390 42 0 0 chr15 1036867 1036915 -84658839 + (GAAAA)n Simple_repeat Simple_repeat 3 50 0 222 216 39 0 chr15 1037051 1037102 -84658652 - MIR SINE MIR -61 147 95 519 302 1 21 chr15 1037439 1038220 -84657534 + CT-rich Low_complexity Low_complexity 1 765 0 533 249 0 38 chr15 1038231 1038416 -84657338 + CT-rich Low_complexity Low_complexity 1 178 0 2199 67 0 3 chr15 1038619 1038937 -84656817 + AluY SINE Alu 1 317 0 184 340 113 0 chr15 1038973 1039079 -84656675 - MER5A DNA MER1_type -48 141 24 214 317 195 0 chr15 1039421 1039544 -84656210 - MIR3 SINE MIR -9 199 53 2010 138 3 0 chr15 1039890 1040202 -84655552 - AluSp SINE Alu 0 313 1 528 234 188 20 chr15 1040337 1040534 -84655220 - MIR SINE MIR -10 252 23 270 254 105 26 chr15 1042134 1042248 -84653506 - L2 LINE L2 -3 3310 3188 397 309 66 0 chr15 1042385 1042521 -84653233 - MIR SINE MIR -70 192 48 257 258 0 0 chr15 1044450 1044512 -84651242 + G-rich Low_complexity Low_complexity 4 65 0 1872 128 3 14 chr15 1045036 1045325 -84650429 + AluSx SINE Alu 1 286 -26 495 33 0 0 chr15 1045326 1045387 -84650367 + (CA)n Simple_repeat Simple_repeat 2 62 0 790 151 68 14 chr15 1045773 1045919 -84649835 + MER5A DNA MER1_type 3 156 -33 1347 182 37 15 chr15 1046664 1046933 -84648821 + AluJo SINE Alu 1 275 -37 314 255 61 36 chr15 1047042 1047303 -84648451 + L1P5 LINE L1 5174 5443 -711 2006 117 3 0 chr15 1047947 1048301 -84647453 - AluSx SINE Alu 0 355 1 691 216 96 0 chr15 1048479 1048646 -84647108 + MER5A DNA MER1_type 5 187 -2 655 296 25 37 chr15 1048876 1049197 -84646557 + L1MC4 LINE L1 7725 8041 -1 262 221 130 0 chr15 1049694 1049771 -84645983 - L1M4 LINE L1 -1310 4836 4750 2193 74 3 7 chr15 1049788 1050087 -84645667 - AluY SINE Alu -13 298 1 909 310 168 14 chr15 1050824 1051439 -84644315 - L2 LINE L2 -251 3062 2353 233 269 60 0 chr15 1051615 1051682 -84644072 - L2 LINE L2 -1040 2274 2204 1855 183 49 16 chr15 1052300 1052688 -84643066 + LTR15 LTR ERV1 1 401 -92 741 220 13 48 chr15 1052692 1052805 -84642949 + AluJo SINE Alu 2 105 -207 1650 138 0 47 chr15 1052805 1053123 -84642631 - AluSp SINE Alu -10 303 1 741 220 13 48 chr15 1053123 1053236 -84642518 + AluJo SINE Alu 105 220 -92 243 0 0 0 chr15 1053263 1053290 -84642464 + (TC)n Simple_repeat Simple_repeat 2 28 0 1292 187 3 27 chr15 1053290 1053584 -84642170 - AluSp SINE Alu -20 293 7 1777 96 10 83 chr15 1053596 1053909 -84641845 - AluSx SINE Alu -1 311 22 575 161 8 17 chr15 1053916 1054034 -84641720 + FLAM_C SINE Alu 1 117 -16 1498 133 13 33 chr15 1054045 1054347 -84641407 - AluSp SINE Alu -17 296 1 763 233 46 32 chr15 1054375 1054503 -84641251 + AluJo SINE Alu 1 135 -177 1825 112 0 21 chr15 1054503 1054790 -84640964 - AluSq SINE Alu -16 297 17 763 233 46 32 chr15 1054790 1054880 -84640874 + AluJo SINE Alu 135 222 -90 1214 69 11 17 chr15 1054922 1055119 -84640635 - AluSg/x SINE Alu 0 308 113 411 246 152 57 chr15 1055408 1055485 -84640269 + L1M4 LINE L1 2128 2196 -3950 1978 98 20 23 chr15 1055485 1055790 -84639964 + AluSg SINE Alu 7 310 0 411 246 152 57 chr15 1055790 1056359 -84639395 + L1M4 LINE L1 2196 2835 -3311 1375 122 77 12 chr15 1057373 1057620 -84638134 - L1PA10 LINE L1 -2 6166 5904 367 186 21 0 chr15 1057646 1057743 -84638011 + (TATATG)n Simple_repeat Simple_repeat 5 103 0 301 300 100 0 chr15 1057743 1057853 -84637901 + L1MC4 LINE L1 6583 6703 -1339 * 402 342 43 39 chr15 1057847 1058081 -84637673 + L1MC4 LINE L1 6468 6702 -1340 200 345 0 0 chr15 1058596 1058651 -84637103 - MIR SINE MIR -133 75 21 1842 146 7 13 chr15 1058870 1059179 -84636575 - AluJb SINE Alu -5 307 1 235 232 184 24 chr15 1059374 1059499 -84636255 - MER103 DNA DNA -20 146 2 830 183 61 96 chr15 1059716 1060028 -84635726 + AluYa5 SINE Alu 1 301 0 566 294 44 27 chr15 1060029 1060103 -84635651 + L1M4 LINE L1 4378 4449 -1697 1377 200 28 92 chr15 1060103 1060493 -84635261 + MLT1A1 LTR MaLR 1 365 0 566 294 44 27 chr15 1060493 1060714 -84635040 + L1M4 LINE L1 4449 4678 -1468 726 176 8 0 chr15 1060726 1060845 -84634909 + FLAM_C SINE Alu 1 120 -13 207 0 0 0 chr15 1060851 1060874 -84634880 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1541 161 68 14 chr15 1060923 1061203 -84634551 - AluJb SINE Alu -17 295 1 287 238 16 0 chr15 1061430 1061493 -84634261 - MIR SINE MIR -112 150 87 1618 174 17 37 chr15 1061708 1062006 -84633748 - AluJo SINE Alu -20 292 1 232 275 25 0 chr15 1062017 1062097 -84633657 - L1MC4 LINE L1 -1352 6690 6609 905 220 30 56 chr15 1062261 1062565 -84633189 - L1MA9 LINE L1 -30 6282 5987 211 194 0 0 chr15 1062738 1062774 -84632980 + (TCTCTG)n Simple_repeat Simple_repeat 5 40 0 471 148 0 0 chr15 1062774 1062862 -84632892 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 2116 131 3 6 chr15 1063336 1063649 -84632105 - AluJb SINE Alu 0 312 1 295 214 0 0 chr15 1063739 1063795 -84631959 + MER3 DNA MER1_type 1 56 -153 803 207 53 0 chr15 1063806 1063975 -84631779 + AluJb SINE Alu 133 310 -2 307 290 106 68 chr15 1063975 1064182 -84631572 + L1MEd LINE L1 931 1145 -4974 2100 117 0 0 chr15 1064219 1064528 -84631226 - AluY SINE Alu 0 309 1 211 259 0 19 chr15 1064837 1064891 -84630863 + (CA)n Simple_repeat Simple_repeat 2 54 0 367 271 57 62 chr15 1067066 1067258 -84628496 + MIR SINE MIR 2 192 -70 291 296 156 7 chr15 1068200 1068335 -84627419 + MIR3 SINE MIR 31 185 -23 338 246 76 25 chr15 1068354 1068472 -84627282 + L2 LINE L2 3146 3269 -3 494 231 141 40 chr15 1070071 1070281 -84625473 + MIR SINE MIR 16 252 -10 220 216 39 0 chr15 1071256 1071307 -84624447 + MIR SINE MIR 95 147 -61 240 35 0 0 chr15 1071444 1071473 -84624281 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 187 268 0 0 chr15 1071808 1071849 -84623905 + MIR SINE MIR 110 150 -58 1861 127 0 86 chr15 1072388 1072712 -84623042 + AluSx SINE Alu 2 297 -15 374 226 144 15 chr15 1072725 1072885 -84622869 + MIR SINE MIR 45 231 -31 968 174 0 0 chr15 1073657 1073812 -84621942 + 7SLRNA srpRNA srpRNA 95 249 -71 25 0 0 0 chr15 1078729 1078754 -84617000 + AT_rich Low_complexity Low_complexity 1 25 0 1520 191 0 0 chr15 1079324 1079570 -84616184 - AluJo SINE Alu -66 246 1 1961 149 10 0 chr15 1079613 1079914 -84615840 - AluSx SINE Alu -8 304 1 237 339 16 8 chr15 1081247 1081374 -84614380 - L2 LINE L2 -2375 939 812 211 262 262 21 chr15 1081598 1081743 -84614011 + MIR SINE MIR 53 232 -30 1752 115 11 11 chr15 1084390 1084650 -84611104 - THE1C LTR MaLR 0 375 116 26 0 0 0 chr15 1084659 1084685 -84611069 + AT_rich Low_complexity Low_complexity 1 26 0 1052 186 67 0 chr15 1084710 1084903 -84610851 - MER2 DNA MER2_type -139 206 1 2614 49 0 7 chr15 1086494 1086799 -84608955 - AluY SINE Alu -6 305 3 2218 66 3 24 chr15 1087008 1087325 -84608429 - AluY SINE Alu 0 311 1 446 314 115 57 chr15 1087606 1088164 -84607590 + L2 LINE L2 1602 2191 -1123 647 200 123 0 chr15 1088262 1088417 -84607337 + MER58B DNA MER1_type 167 340 -1 302 254 109 52 chr15 1088982 1089175 -84606579 - L1MC4a LINE L1 -1932 5876 5673 28 0 0 0 chr15 1089459 1089487 -84606267 + AT_rich Low_complexity Low_complexity 1 28 0 1914 257 89 6 chr15 1090172 1090803 -84604951 + L1 LINE L1 2046 2726 -3420 662 212 155 21 chr15 1090843 1090958 -84604796 + AluJb SINE Alu 2 100 -212 1521 139 56 21 chr15 1090958 1091126 -84604628 - AluSp SINE Alu -5 298 114 270 0 0 0 chr15 1091126 1091156 -84604598 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1521 139 56 21 chr15 1091156 1091274 -84604480 - AluSp SINE Alu -189 114 2 662 212 155 21 chr15 1091274 1091351 -84604403 + AluJb SINE Alu 100 220 -92 1292 142 88 61 chr15 1091382 1091678 -84604076 - AluSp SINE Alu -9 304 1 904 260 94 76 chr15 1092398 1092621 -84603133 - L1ME3A LINE L1 -6 6164 5946 2160 96 3 7 chr15 1092621 1092914 -84602840 - AluSc SINE Alu -17 292 1 904 260 94 76 chr15 1092914 1093263 -84602491 - L1ME3A LINE L1 -224 5946 5576 2482 48 3 35 chr15 1093263 1093573 -84602181 + AluY SINE Alu 1 300 -11 904 260 94 76 chr15 1093573 1093683 -84602071 - L1ME3A LINE L1 -594 5576 5469 1845 234 68 12 chr15 1093688 1094171 -84601583 - MLT2B1 LTR ERVL -10 510 1 2813 233 46 25 chr15 1094174 1095069 -84600685 - ERVL LTR ERVL -3 5651 4773 1562 226 122 88 chr15 1095104 1095824 -84599930 - LTR1B LTR ERV1 -81 745 1 18794 201 34 18 chr15 1095824 1097924 -84597830 - ERVL LTR ERVL -949 4815 2623 1225 167 14 14 chr15 1097924 1098134 -84597620 + MER6B DNA MER2_type 1 210 0 18794 201 34 18 chr15 1098134 1099791 -84595963 - ERVL LTR ERVL -3141 2623 995 367 214 51 31 chr15 1099792 1099858 -84595896 + MER4-int LTR ERV1 351 421 -7699 314 61 20 0 chr15 1099858 1099907 -84595847 + (TG)n Simple_repeat Simple_repeat 1 50 0 367 214 51 31 chr15 1099907 1099938 -84595816 + MER4-int LTR ERV1 421 450 -7670 6925 153 58 35 chr15 1100011 1101392 -84594362 + MER4-int LTR ERV1 451 1863 -6257 815 182 25 106 chr15 1101407 1101597 -84594157 + MER4-int LTR ERV1 2346 2550 -4048 2433 64 0 0 chr15 1101597 1101894 -84593860 - AluY SINE Alu -14 297 1 815 182 25 106 chr15 1101894 1102072 -84593682 + MER4-int LTR ERV1 2550 3710 -2888 1893 150 40 52 chr15 1102082 1102429 -84593325 + MER61A LTR ERV1 1 343 0 263 245 41 31 chr15 1102431 1102529 -84593225 + MER61A-int LTR ERV1 3 101 -5116 1409 118 78 108 chr15 1102749 1102907 -84592847 + MER61A-int LTR ERV1 246 390 -4827 2391 76 0 19 chr15 1102907 1103224 -84592530 - AluY SINE Alu 0 311 1 1409 118 78 108 chr15 1103224 1103397 -84592357 + MER61A-int LTR ERV1 390 567 -4650 * 4325 88 13 8 chr15 1103377 1104001 -84591753 + MER61A-int LTR ERV1 1396 2022 -3195 * 7842 72 18 4 chr15 1103990 1105017 -84590737 + MER61A-int LTR ERV1 2948 3988 -1229 1710 227 25 19 chr15 1105017 1105502 -84590252 - L1 LINE L1 -2441 3705 3218 2762 188 69 21 chr15 1105502 1105581 -84590173 + MER4-int LTR ERV1 4962 5036 -3084 2344 87 0 7 chr15 1105581 1105880 -84589874 - AluSg SINE Alu -13 297 1 2762 188 69 21 chr15 1105880 1106427 -84589327 + MER4-int LTR ERV1 5036 5618 -2502 2559 71 0 0 chr15 1106436 1106747 -84589007 - AluY SINE Alu 0 311 1 3404 175 38 12 chr15 1106754 1107353 -84588401 + MER4-int LTR ERV1 3116 3730 -3028 256 184 0 0 chr15 1107347 1107396 -84588358 + MER4-int LTR ERV1 1114 1162 -5436 * 279 233 27 0 chr15 1107397 1107470 -84588284 + (TA)n Simple_repeat Simple_repeat 1 75 0 4535 157 104 68 chr15 1107475 1108455 -84587299 + MER4-int LTR ERV1 6631 7645 -475 235 143 0 71 chr15 1108455 1108497 -84587257 + LOR1b LTR ERV1 395 433 -28 1135 277 58 27 chr15 1108498 1108674 -84587080 - HERVL-B1 LTR ERVL -5185 469 300 1859 149 5 115 chr15 1108674 1109064 -84586690 - MER7A DNA MER2_type -1 345 1 1135 277 58 27 chr15 1109064 1109338 -84586416 - HERVL-B1 LTR ERVL -5354 300 5 231 118 0 0 chr15 1109338 1109372 -84586382 - MLT2B1 LTR ERVL -6 514 481 571 66 0 22 chr15 1109372 1109463 -84586291 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 967 252 110 3 chr15 1109465 1109782 -84585972 - MLT2B1 LTR ERVL -169 351 1 307 245 24 0 chr15 1109785 1109913 -84585841 - L1ME LINE L1 -688 5474 5341 377 274 111 8 chr15 1109928 1110162 -84585592 - L1ME LINE L1 -846 5300 5043 1578 235 70 56 chr15 1110415 1110754 -84585000 + L1MEc LINE L1 2172 2505 -3710 2938 32 3 12 chr15 1110754 1111093 -84584661 - L1PA4 LINE L1 0 6155 5820 1578 235 70 56 chr15 1111093 1111512 -84584242 + L1MEc LINE L1 2505 2894 -3321 518 206 20 0 chr15 1111665 1111767 -84583987 - AluSp SINE Alu -78 235 132 1703 172 17 7 chr15 1111771 1112068 -84583686 + LTR15 LTR ERV1 188 487 -6 775 184 18 79 chr15 1112134 1112253 -84583501 + AluJb SINE Alu 2 102 -210 1563 165 0 29 chr15 1112253 1112562 -84583192 - AluSp SINE Alu -13 300 1 775 184 18 79 chr15 1112562 1112670 -84583084 + AluJb SINE Alu 102 215 -97 260 88 0 0 chr15 1112673 1112707 -84583047 + AluJb SINE Alu 84 117 -185 697 150 0 25 chr15 1112726 1112846 -84582908 - AluSp SINE Alu -194 119 3 595 162 45 0 chr15 1112877 1112988 -84582766 + AluJb SINE Alu 2 117 -195 22 0 0 0 chr15 1113093 1113115 -84582639 + AT_rich Low_complexity Low_complexity 1 22 0 1834 104 8 0 chr15 1113115 1113375 -84582379 + AluSq SINE Alu 36 297 -16 1633 240 112 14 chr15 1114510 1115026 -84580728 + L1ME3 LINE L1 5489 6055 -107 800 187 58 0 chr15 1115026 1115181 -84580573 + AluJo SINE Alu 1 164 -148 1763 133 0 73 chr15 1115403 1115733 -84580021 + AluSg SINE Alu 1 306 -4 330 322 17 8 chr15 1116795 1116913 -84578841 + GA-rich Low_complexity Low_complexity 3 121 0 2045 81 0 37 chr15 1117363 1117661 -84578093 - AluY SINE Alu -24 287 1 287 307 0 11 chr15 1117823 1117911 -84577843 + CT-rich Low_complexity Low_complexity 4 90 0 2292 155 52 2 chr15 1118148 1118554 -84577200 + MSTB LTR MaLR 1 426 0 489 100 0 67 chr15 1119212 1119302 -84576452 - L1PA8 LINE L1 -6 6166 6083 1660 229 9 6 chr15 1119463 1119812 -84575942 - MLT1A1 LTR MaLR -15 350 1 22 0 0 0 chr15 1120128 1120150 -84575604 + AT_rich Low_complexity Low_complexity 1 22 0 2501 43 0 3 chr15 1120223 1120525 -84575229 - AluY SINE Alu -10 301 1 293 85 6 0 chr15 1121082 1121131 -84574623 - MLT2C1 LTR ERVL -4 410 349 24 0 0 0 chr15 1121447 1121471 -84574283 + AT_rich Low_complexity Low_complexity 1 24 0 780 252 25 3 chr15 1121665 1121900 -84573854 + L1MC4 LINE L1 7337 7631 -364 310 227 38 8 chr15 1121900 1122032 -84573722 + GA-rich Low_complexity Low_complexity 4 139 0 599 184 94 80 chr15 1122088 1122200 -84573554 + L1MC4 LINE L1 7593 7711 -331 2180 65 0 45 chr15 1122200 1122509 -84573245 - AluY SINE Alu -16 295 1 599 184 94 80 chr15 1122509 1122597 -84573157 + L1MC4 LINE L1 7711 7796 -246 208 143 0 0 chr15 1122645 1122680 -84573074 + (TA)n Simple_repeat Simple_repeat 1 35 0 944 190 22 66 chr15 1122715 1122941 -84572813 - MER20 DNA MER1_type 0 219 4 753 316 35 11 chr15 1122982 1123358 -84572396 + L1MEc LINE L1 1601 1985 -4411 1448 192 66 10 chr15 1123376 1123678 -84572076 - L1MC1 LINE L1 0 6333 6015 735 302 7 7 chr15 1124019 1124307 -84571447 + L1MEc LINE L1 2209 2496 -3719 1253 260 51 8 chr15 1124410 1124917 -84570837 + L1MEc LINE L1 2506 3034 -3181 * 2974 116 57 116 chr15 1124897 1125026 -84570728 + L1MA5A LINE L1 5658 5793 -504 1694 128 79 0 chr15 1125026 1125292 -84570462 + AluSx SINE Alu 1 287 -25 2974 116 57 116 chr15 1125292 1125842 -84569912 + L1MA5A LINE L1 5793 6297 0 782 285 253 5 chr15 1125844 1126279 -84569475 + L1MEc LINE L1 3000 3542 -2673 317 200 14 0 chr15 1126279 1126349 -84569405 - L1 LINE L1 -2743 3403 3333 716 209 11 6 chr15 1126355 1126532 -84569222 + L1 LINE L1 2894 3071 -3075 22 0 0 0 chr15 1129940 1129962 -84565792 + GC_rich Low_complexity Low_complexity 1 22 0 1716 213 30 26 chr15 1130318 1130750 -84565004 + L1 LINE L1 3062 3498 -2648 2124 71 0 45 chr15 1130750 1131060 -84564694 + AluY SINE Alu 1 296 -15 1716 213 30 26 chr15 1131060 1131135 -84564619 + L1 LINE L1 3498 3571 -2575 822 151 27 27 chr15 1131150 1131296 -84564458 - AluJo SINE Alu -115 197 52 1954 127 3 0 chr15 1131397 1131689 -84564065 - AluSx SINE Alu -19 293 1 2036 132 0 0 chr15 1132063 1132373 -84563381 - AluSg SINE Alu 0 310 1 2185 258 96 10 chr15 1132378 1133158 -84562596 - L1ME1 LINE L1 0 6166 5320 2048 172 120 2 chr15 1133231 1133656 -84562098 - LTR53 LTR ERVL -40 479 5 604 209 16 44 chr15 1133701 1133883 -84561871 - L1MDa LINE L1 -4821 1719 1543 413 212 117 51 chr15 1133887 1134024 -84561730 + MER21B LTR ERV1 661 806 -57 2050 129 3 3 chr15 1134594 1134905 -84560849 - AluY SINE Alu 0 311 1 860 276 126 39 chr15 1137446 1137740 -84558014 - L1ME2 LINE L1 -112 6052 5785 1699 163 13 3 chr15 1137740 1138047 -84557707 - AluJo SINE Alu 0 312 3 860 276 126 39 chr15 1138047 1138259 -84557495 - L1ME2 LINE L1 -379 5785 5502 2027 139 3 0 chr15 1138794 1139103 -84556651 - AluSp SINE Alu -3 310 1 2132 124 0 0 chr15 1139126 1139433 -84556321 - AluSx SINE Alu -5 307 1 254 115 0 138 chr15 1140195 1140282 -84555472 + (GGGTG)n Simple_repeat Simple_repeat 4 78 0 242 281 35 18 chr15 1140943 1141057 -84554697 + Charlie5 DNA MER1_type 1 116 -2496 * 1117 232 3 10 chr15 1141052 1141362 -84554392 + Charlie5 DNA MER1_type 2222 2529 -83 1836 121 3 70 chr15 1141362 1141677 -84554077 - AluSx SINE Alu -18 294 1 189 0 0 0 chr15 1141721 1141742 -84554012 + (T)n Simple_repeat Simple_repeat 1 21 0 1909 141 0 3 chr15 1141785 1142068 -84553686 - AluSx SINE Alu -30 282 1 23 33 0 0 chr15 1142753 1142783 -84552971 + AT_rich Low_complexity Low_complexity 1 30 0 383 78 0 0 chr15 1143275 1143326 -84552428 - Alu SINE Alu -249 52 2 2082 125 3 0 chr15 1143546 1143850 -84551904 - AluSx SINE Alu -7 305 1 275 239 119 15 chr15 1145371 1145505 -84550249 + MIR SINE MIR 21 168 -94 391 287 167 7 chr15 1145536 1145686 -84550068 + MER5A DNA MER1_type 1 174 -15 405 256 64 0 chr15 1146531 1146656 -84549098 + MIR3 SINE MIR 42 174 -34 235 361 28 21 chr15 1147871 1148015 -84547739 + L2 LINE L2 2250 2394 -920 324 309 59 59 chr15 1148863 1149067 -84546687 - MLT1L LTR MaLR -407 208 5 511 233 57 23 chr15 1150214 1150390 -84545364 + L1ME2 LINE L1 5982 6163 -1 1663 146 49 14 chr15 1150410 1150698 -84545056 + AluSx SINE Alu 1 298 -14 1851 95 106 0 chr15 1151326 1151590 -84544164 - AluSx SINE Alu -20 292 1 27 0 0 0 chr15 1151603 1151630 -84544124 + AT_rich Low_complexity Low_complexity 1 27 0 3684 161 19 9 chr15 1152507 1152770 -84542984 + L1PB4 LINE L1 5502 5761 -395 396 0 0 0 chr15 1152770 1152814 -84542940 + (TA)n Simple_repeat Simple_repeat 2 45 0 3684 161 19 9 chr15 1152814 1153197 -84542557 + L1PB4 LINE L1 5761 6154 -2 1263 231 77 12 chr15 1153202 1153631 -84542123 + L1ME1 LINE L1 4362 4818 -1328 746 223 58 22 chr15 1153644 1153918 -84541836 + L1ME1 LINE L1 4995 5278 -868 804 168 6 56 chr15 1153945 1154106 -84541648 + FRAM SINE Alu 12 164 -12 1353 279 164 14 chr15 1154125 1154834 -84540920 + L1ME1 LINE L1 5345 6159 -7 703 332 56 23 chr15 1154865 1155296 -84540458 + L1M3c LINE L1 1 445 -5696 1529 256 50 30 chr15 1155492 1155652 -84540102 - LTR49-int LTR ERV1 -2401 2722 2567 2549 33 0 0 chr15 1155652 1155953 -84539801 - AluY SINE Alu -10 301 1 1529 256 50 30 chr15 1155953 1156316 -84539438 - LTR49-int LTR ERV1 -2556 2567 2189 2388 220 51 65 chr15 1156324 1157160 -84538594 - LTR49-int LTR ERV1 -1992 3297 2344 1910 104 0 0 chr15 1157160 1157420 -84538334 + AluSx SINE Alu 44 303 -9 2388 220 51 65 chr15 1157420 1157505 -84538249 - LTR49-int LTR ERV1 -2945 2344 2259 983 238 95 53 chr15 1157506 1158044 -84537710 - LTR49-int LTR ERV1 -3571 2375 1861 2052 62 7 56 chr15 1158044 1158380 -84537374 - AluY SINE Alu 0 311 1 983 238 95 53 chr15 1158380 1158533 -84537221 - LTR49-int LTR ERV1 -4085 1861 998 738 148 0 8 chr15 1158701 1158829 -84536925 - AluSp SINE Alu -180 133 7 332 167 15 0 chr15 1158860 1158926 -84536828 + AluJb SINE Alu 51 117 -185 1441 163 19 47 chr15 1158927 1159246 -84536508 - AluSp SINE Alu -3 310 1 844 85 15 0 chr15 1159252 1159382 -84536372 - AluSp SINE Alu -180 133 2 542 197 8 8 chr15 1159411 1159528 -84536226 + FLAM_C SINE Alu 1 117 -16 1645 138 10 39 chr15 1159541 1159846 -84535908 - AluSp SINE Alu -17 296 1 1275 175 12 86 chr15 1159873 1159984 -84535770 + AluJb SINE Alu 1 119 -183 1359 166 42 0 chr15 1159984 1160147 -84535607 - AluSp SINE Alu -17 296 114 324 0 0 0 chr15 1160147 1160183 -84535571 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1359 166 42 0 chr15 1160183 1160303 -84535451 - AluSp SINE Alu -199 114 1 1275 175 12 86 chr15 1160303 1160517 -84535237 + AluJb SINE Alu 119 302 0 185 250 143 0 chr15 1160782 1160838 -84534916 - MIR SINE MIR -93 169 106 277 216 76 124 chr15 1161103 1161373 -84534381 + L1MC5 LINE L1 7563 7845 -116 2061 110 0 0 chr15 1161373 1161655 -84534099 + AluSq SINE Alu 1 282 -31 203 79 26 0 chr15 1161659 1161697 -84534057 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 277 216 76 124 chr15 1161697 1161791 -84533963 + L1MC5 LINE L1 7848 7914 -47 1609 121 9 0 chr15 1361902 1362133 -84333621 + AluSg/x SINE Alu 66 298 -12 234 0 0 0 chr15 1362302 1362328 -84333426 + (A)n Simple_repeat Simple_repeat 1 26 0 22 43 0 21 chr15 1362587 1362608 -84333146 + AT_rich Low_complexity Low_complexity 1 21 -25 1657 157 51 0 chr15 1362608 1362882 -84332872 - AluJb SINE Alu -24 288 1 22 43 0 21 chr15 1362882 1362907 -84332847 + AT_rich Low_complexity Low_complexity 21 46 0 948 162 7 0 chr15 1362915 1363069 -84332685 - AluJo SINE Alu -74 238 84 1668 135 0 0 chr15 1363473 1363725 -84332029 + AluSq SINE Alu 58 309 -4 1942 93 21 11 chr15 1363861 1364178 -84331576 + AluSq SINE Alu 1 320 0 2412 53 0 3 chr15 1364402 1364702 -84331052 - AluY SINE Alu -12 299 1 2434 66 0 0 chr15 1365110 1365412 -84330342 - AluY SINE Alu -9 302 1 904 155 0 26 chr15 1365421 1365576 -84330178 - FRAM SINE Alu -23 153 3 1670 169 3 13 chr15 1365688 1365996 -84329758 - AluJo SINE Alu -7 305 1 2053 102 40 7 chr15 1366010 1366313 -84329441 - AluSq SINE Alu 0 313 1 2093 118 0 3 chr15 1366617 1366913 -84328841 - AluSg SINE Alu -15 295 1 1680 177 0 10 chr15 1366913 1367212 -84328542 - AluJb SINE Alu -14 298 3 307 73 24 0 chr15 1367258 1367299 -84328455 + 5S rRNA rRNA 1 42 -79 713 205 8 0 chr15 1367358 1367480 -84328274 + FLAM_A SINE Alu 1 123 -10 196 293 17 0 chr15 1368226 1368284 -84327470 + MIR3 SINE MIR 15 73 -135 2013 140 0 0 chr15 1368310 1368610 -84327144 - AluSx SINE Alu -12 300 1 993 80 0 15 chr15 1368610 1368747 -84327007 - AluSq/x SINE Alu -177 135 1 1155 145 199 12 chr15 1369153 1369394 -84326360 - AluSg1 SINE Alu -23 286 1 1945 155 0 0 chr15 1369400 1369697 -84326057 - AluSq SINE Alu -12 301 5 513 177 0 0 chr15 1369789 1369868 -84325886 + AluJ/FLAM SINE Alu 13 91 -221 1152 165 5 9 chr15 1370053 1370265 -84325489 - AluJb SINE Alu -10 302 92 1210 113 62 5 chr15 1370403 1370598 -84325156 + AluSg/x SINE Alu 90 295 -15 2497 166 110 25 chr15 1371070 1371589 -84324165 + LTR6A LTR ERV1 2 564 0 1344 224 0 10 chr15 1371609 1371922 -84323832 - AluJo SINE Alu -2 310 1 702 236 208 48 chr15 1371973 1372213 -84323541 - L2 LINE L2 -5 3308 3108 2127 108 10 0 chr15 1372213 1372510 -84323244 - AluSx SINE Alu -12 300 1 702 236 208 48 chr15 1372510 1372791 -84322963 - L2 LINE L2 -205 3108 2709 492 194 19 0 chr15 1372837 1372940 -84322814 + MIR SINE MIR 93 197 -65 327 236 146 0 chr15 1372966 1373076 -84322678 - L2 LINE L2 -721 2593 2468 752 151 0 0 chr15 1373080 1373199 -84322555 + FLAM_C SINE Alu 6 124 -19 1520 178 16 16 chr15 1373214 1373523 -84322231 + AluJo SINE Alu 1 309 -3 186 250 0 0 chr15 1373555 1373611 -84322143 + GA-rich Low_complexity Low_complexity 1 56 0 710 120 4 58 chr15 1373635 1373902 -84321852 + (GGGGA)n Simple_repeat Simple_repeat 1 252 0 530 243 91 100 chr15 1374047 1374274 -84321480 + L1M4 LINE L1 4156 4381 -1765 1869 154 0 13 chr15 1374274 1374586 -84321168 + AluSx SINE Alu 1 308 -4 530 243 91 100 chr15 1374586 1374687 -84321067 + L1M4 LINE L1 4381 4481 -1665 836 191 25 0 chr15 1374720 1374882 -84320872 - AluJb SINE Alu -10 302 137 2091 128 0 0 chr15 1374909 1375221 -84320533 + AluSx SINE Alu 1 312 0 2069 117 17 0 chr15 1375609 1375899 -84319855 + AluSq SINE Alu 1 295 -18 756 158 0 43 chr15 1376081 1376220 -84319534 + FLAM_C SINE Alu 1 133 0 1864 122 0 78 chr15 1376245 1376374 -84319380 + AluSx SINE Alu 7 144 -168 2018 109 3 0 chr15 1376374 1376658 -84319096 + AluSg1 SINE Alu 1 285 -24 1864 122 0 78 chr15 1376658 1376849 -84318905 + AluSx SINE Alu 144 302 -10 687 171 0 17 chr15 1376858 1376975 -84318779 - FLAM_C SINE Alu -16 117 3 2049 97 47 3 chr15 1377271 1377571 -84318183 + AluSq SINE Alu 1 313 0 1674 167 3 37 chr15 1377672 1377807 -84317947 + AluJb SINE Alu 1 139 -173 2272 90 3 0 chr15 1377807 1378108 -84317646 + AluSp SINE Alu 1 302 -11 1674 167 3 37 chr15 1378108 1378295 -84317459 + AluJb SINE Alu 139 312 0 1014 129 29 12 chr15 1378825 1378996 -84316758 - AluSq SINE Alu -6 307 134 1867 133 0 23 chr15 1378996 1379297 -84316457 - AluSx SINE Alu -18 294 1 337 113 0 0 chr15 1379297 1379350 -84316404 + MADE1 DNA Mariner 28 80 0 1083 128 0 0 chr15 1379852 1380008 -84315746 - FRAM SINE Alu -10 166 11 1663 146 26 42 chr15 1380432 1380740 -84315014 - AluSx SINE Alu -9 303 1 2110 119 3 3 chr15 1381700 1382012 -84313742 + AluSx SINE Alu 1 312 0 2416 68 7 0 chr15 1382060 1382369 -84313385 + AluY SINE Alu 1 311 0 2106 96 0 10 chr15 1382709 1383021 -84312733 + AluSg SINE Alu 1 310 0 1244 97 0 0 chr15 1383562 1383727 -84312027 - AluSc SINE Alu -13 296 132 2198 98 0 3 chr15 1383727 1384032 -84311722 - AluY SINE Alu -7 304 1 253 341 30 15 chr15 1385355 1385487 -84310267 - MIR SINE MIR -126 136 3 294 339 105 0 chr15 1386275 1386399 -84309355 + MIR SINE MIR 48 184 -78 319 244 25 59 chr15 1386714 1386833 -84308921 + MLT2C1 LTR ERVL 2 116 -281 245 323 30 0 chr15 1386850 1386949 -84308805 + MLT2C1 LTR ERVL 237 338 -59 341 182 0 0 chr15 1386961 1387027 -84308727 + MER72 LTR ERV1 1 66 -656 2414 230 68 12 chr15 1387450 1388036 -84307718 + MER82 DNA MER2_type 34 652 -1 1268 211 187 44 chr15 1388163 1388618 -84307136 - MLT2B1 LTR ERVL 0 520 1 345 314 71 59 chr15 1388887 1389142 -84306612 - MIR SINE MIR -3 259 2 185 387 28 35 chr15 1389885 1390027 -84305727 + L2 LINE L2 2746 2886 -428 1934 128 3 10 chr15 1390386 1390684 -84305070 - AluSx SINE Alu -12 300 5 378 0 0 0 chr15 1390991 1391033 -84304721 + (TG)n Simple_repeat Simple_repeat 1 42 0 270 193 59 30 chr15 1391069 1391204 -84304550 + (TG)n Simple_repeat Simple_repeat 1 139 0 207 0 0 0 chr15 1391218 1391241 -84304513 + (TG)n Simple_repeat Simple_repeat 1 23 0 229 85 0 43 chr15 1391241 1391288 -84304466 + (GA)n Simple_repeat Simple_repeat 2 46 0 525 281 0 16 chr15 1391871 1391999 -84303755 - L2 LINE L2 0 3313 3188 7313 44 3 0 chr15 1393612 1394763 -84300991 + L1PA3 LINE L1 4984 6137 -18 4411 224 57 46 chr15 1394865 1396291 -84299463 - L1MDa LINE L1 -2364 4176 2767 1995 110 28 7 chr15 1396291 1396582 -84299172 - AluSq SINE Alu -16 297 1 4411 224 57 46 chr15 1396582 1397015 -84298739 - L1MDa LINE L1 -3773 2767 2340 1617 161 83 9 chr15 1397015 1397351 -84298403 + MER46B DNA MER2_type 1 236 0 4411 224 57 46 chr15 1397351 1398160 -84297594 - L1MDa LINE L1 -4200 2340 1483 192 40 0 0 chr15 1398160 1398185 -84297569 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 390 134 0 0 chr15 1398207 1398274 -84297480 + (TCCCG)n Simple_repeat Simple_repeat 4 70 0 1729 149 4 0 chr15 1398276 1398551 -84297203 - AluSg SINE Alu -34 276 1 315 217 86 57 chr15 1400043 1400218 -84295536 - L1MC4a LINE L1 -1926 5882 5703 2245 94 0 3 chr15 1400220 1400529 -84295225 + AluSq SINE Alu 1 308 -5 936 61 0 0 chr15 1400898 1401012 -84294742 - AluY SINE Alu -197 114 1 530 295 70 44 chr15 1401015 1401469 -84294285 - L1MC5 LINE L1 -179 7782 7317 362 214 32 97 chr15 1401637 1401791 -84293963 - L1MC5 LINE L1 -861 7100 6957 514 231 35 35 chr15 1401845 1402048 -84293706 - L1M4 LINE L1 -3097 3049 2847 350 267 22 0 chr15 1402116 1402206 -84293548 - L1M4 LINE L1 -3327 2819 2728 1836 164 0 0 chr15 1404311 1404598 -84291156 + AluJb SINE Alu 1 287 -25 2167 96 7 0 chr15 1404607 1404899 -84290855 + AluSq SINE Alu 1 294 -19 244 367 61 0 chr15 1405335 1405433 -84290321 - L2 LINE L2 -1 3271 3168 2257 85 3 0 chr15 1408700 1408994 -84286760 - AluSc SINE Alu -14 295 1 2055 227 70 39 chr15 1409457 1410044 -84285710 - MER77 LTR ERV1 0 605 1 1032 254 53 22 chr15 1410198 1410521 -84285233 + MER58B DNA MER1_type 4 336 -5 22 0 0 0 chr15 1410691 1410713 -84285041 + AT_rich Low_complexity Low_complexity 1 22 0 3787 193 62 59 chr15 1413143 1413959 -84281795 - L1MB5 LINE L1 0 6174 5361 2262 103 0 0 chr15 1413959 1414270 -84281484 - AluSx SINE Alu -1 311 1 3787 193 62 59 chr15 1414270 1415163 -84280591 - L1MB5 LINE L1 -813 5361 4457 1519 206 69 43 chr15 1415168 1415309 -84280445 - L1MB5 LINE L1 -2486 3660 3524 2327 70 0 0 chr15 1415309 1415609 -84280145 - AluY SINE Alu -11 300 1 1519 206 69 43 chr15 1415609 1415852 -84279902 - L1MB5 LINE L1 -2622 3524 3256 2147 99 0 13 chr15 1415852 1416155 -84279599 - AluSc SINE Alu 0 309 11 1519 206 69 43 chr15 1416155 1416304 -84279450 - L1MB5 LINE L1 -2890 3256 3112 926 199 0 5 chr15 1416309 1416505 -84279249 - AluJb SINE Alu 0 312 118 1398 223 58 17 chr15 1416505 1416968 -84278786 - L1MB5 LINE L1 -3052 3094 2613 1514 151 0 44 chr15 1417101 1417372 -84278382 + AluJb SINE Alu 23 281 -31 213 139 0 0 chr15 1417387 1417430 -84278324 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 219 181 56 0 chr15 1417430 1417502 -84278252 + (TA)n Simple_repeat Simple_repeat 2 77 0 1907 266 47 46 chr15 1417508 1418477 -84277277 - HERVL68 LTR ERVL -1920 1117 60 2332 176 109 0 chr15 1418485 1418990 -84276764 - MER68 LTR ERV1 -2 560 1 314 257 121 36 chr15 1418992 1419132 -84276622 - L1ME LINE L1 -339 5782 5631 1508 172 80 43 chr15 1422171 1422583 -84273171 - MLT1C LTR MaLR 0 467 1 871 239 128 51 chr15 1422584 1422973 -84272781 - MLT1C LTR MaLR -46 421 3 343 315 6 0 chr15 1423800 1423965 -84271789 + (TG)n Simple_repeat Simple_repeat 1 166 0 790 142 0 0 chr15 1424442 1424562 -84271192 + FLAM_A SINE Alu 20 139 -3 2116 108 0 13 chr15 1425387 1425694 -84270060 + AluSg SINE Alu 1 303 -7 2140 86 7 13 chr15 1427332 1427636 -84268118 - AluSx SINE Alu -10 302 1 316 217 217 19 chr15 1427659 1427765 -84267989 - L1ME4a LINE L1 0 6121 5995 338 248 10 0 chr15 1429802 1429901 -84265853 + MER5A DNA MER1_type 10 98 -80 2282 87 0 0 chr15 1430135 1430435 -84265319 + AluY SINE Alu 3 302 -9 856 135 0 81 chr15 1430435 1430620 -84265134 + AluSg/x SINE Alu 132 301 -9 979 197 170 3 chr15 1430764 1430916 -84264838 + MER2 DNA MER2_type 2 127 -217 2433 77 0 0 chr15 1430916 1431227 -84264527 + AluY SINE Alu 1 311 0 979 197 170 3 chr15 1431227 1431368 -84264386 + MER2 DNA MER2_type 127 344 0 268 119 174 55 chr15 1431470 1431579 -84264175 + L1ME4a LINE L1 5999 6120 -1 935 178 40 0 chr15 1432623 1432797 -84262957 + MER58A DNA MER1_type 44 224 0 450 227 100 0 chr15 1433131 1433241 -84262513 + MLT1D LTR MaLR 385 505 0 224 281 101 0 chr15 1434352 1434441 -84261313 - L2 LINE L2 -215 3057 2960 390 242 68 43 chr15 1434982 1435143 -84260611 + MIR3 SINE MIR 3 167 -41 2043 130 0 3 chr15 1435921 1436229 -84259525 + AluSq SINE Alu 1 307 -6 884 257 15 20 chr15 1437154 1437480 -84258274 - MER34C LTR ERV1 -155 430 63 6373 34 4 0 chr15 1438218 1438956 -84256798 + L1PA5 LINE L1 5408 6148 -6 263 305 21 0 chr15 1439726 1439821 -84255933 - L2 LINE L2 -1 3312 3216 1745 161 10 26 chr15 1441848 1442159 -84253595 - AluSp SINE Alu -7 306 1 1968 140 0 0 chr15 1442531 1442824 -84252930 + AluSx SINE Alu 1 293 -19 217 314 0 0 chr15 1442994 1443064 -84252690 - MIR SINE MIR -8 254 185 3425 175 5 14 chr15 1443375 1444039 -84251715 - L1MA5 LINE L1 -1 6299 5642 1728 201 214 28 chr15 1444041 1444643 -84251111 + L1 LINE L1 3884 4597 -1549 28 29 0 0 chr15 1445281 1445316 -84250438 + AT_rich Low_complexity Low_complexity 1 35 0 200 158 105 0 chr15 1445369 1445445 -84250309 + (CATTT)n Simple_repeat Simple_repeat 5 88 0 561 123 81 6 chr15 1445466 1445781 -84249973 + (CATTT)n Simple_repeat Simple_repeat 1 338 0 43125 37 24 1 chr15 1445793 1451811 -84243943 - L1PA2 LINE L1 0 6155 3 313 177 42 0 chr15 1451812 1451908 -84243846 + (CATCT)n Simple_repeat Simple_repeat 2 101 0 337 289 85 73 chr15 1451916 1453288 -84242466 - L1MEd LINE L1 -4902 1217 795 578 119 89 8 chr15 1453288 1453524 -84242230 + (CATTT)n Simple_repeat Simple_repeat 1 255 0 301 131 66 0 chr15 1453528 1453589 -84242165 + (CATCT)n Simple_repeat Simple_repeat 5 69 0 350 287 111 64 chr15 1453593 1454263 -84241491 - L1MEd LINE L1 -4892 1227 798 218 87 43 72 chr15 1454324 1454393 -84241361 + (CATCT)n Simple_repeat Simple_repeat 1 67 0 36 33 0 16 chr15 1454517 1454541 -84241213 + AT_rich Low_complexity Low_complexity 1 24 -36 703 189 23 30 chr15 1454541 1454555 -84241199 - FLAM_C SINE Alu -171 131 118 1420 189 50 13 chr15 1454555 1454856 -84240898 - AluJo SINE Alu 0 312 1 198 0 0 0 chr15 1454856 1454878 -84240876 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 703 189 23 30 chr15 1454878 1454994 -84240760 - FLAM_C SINE Alu -182 120 1 36 33 0 16 chr15 1454994 1455030 -84240724 + AT_rich Low_complexity Low_complexity 24 60 0 273 324 47 0 chr15 1455420 1455568 -84240186 + (CTAGGG)n Simple_repeat Simple_repeat 6 160 0 261 141 0 78 chr15 1455568 1455759 -84239995 + (CAGGG)n Simple_repeat Simple_repeat 1 176 0 219 177 0 99 chr15 1455877 1456164 -84239590 + (CAGGG)n Simple_repeat Simple_repeat 1 258 0 340 171 0 55 chr15 1456191 1456355 -84239399 + (CAGGG)n Simple_repeat Simple_repeat 2 156 0 361 178 2 76 chr15 1456488 1457067 -84238687 + (CAGGG)n Simple_repeat Simple_repeat 1 535 0 205 141 0 90 chr15 1457074 1457152 -84238602 + (CCCTG)n Simple_repeat Simple_repeat 1 71 0 788 126 0 17 chr15 1457206 1457325 -84238429 - AluJb SINE Alu -179 133 17 392 223 32 11 chr15 1457327 1457421 -84238333 + MIR SINE MIR 92 187 -75 335 293 48 0 chr15 1457630 1457777 -84237977 + (CCCTAG)n Simple_repeat Simple_repeat 6 159 0 284 265 61 7 chr15 1457989 1458136 -84237618 + (CTAGGG)n Simple_repeat Simple_repeat 6 160 0 203 174 0 47 chr15 1458140 1458226 -84237528 + (CAGGG)n Simple_repeat Simple_repeat 5 86 0 444 275 47 0 chr15 1458237 1458408 -84237346 + (CTAGGG)n Simple_repeat Simple_repeat 2 180 0 296 277 54 14 chr15 1458421 1458569 -84237185 + (CTAGGG)n Simple_repeat Simple_repeat 1 154 0 239 321 45 0 chr15 1458589 1458723 -84237031 + (CTAGGG)n Simple_repeat Simple_repeat 1 140 0 431 250 34 23 chr15 1458785 1458961 -84236793 + (CTAGGG)n Simple_repeat Simple_repeat 1 178 0 244 152 0 79 chr15 1458962 1459126 -84236628 + (CAGGG)n Simple_repeat Simple_repeat 1 151 0 307 302 28 28 chr15 1459142 1459321 -84236433 + (CTAGGG)n Simple_repeat Simple_repeat 2 180 0 189 143 7 79 chr15 1459370 1459510 -84236244 + (CAGGG)n Simple_repeat Simple_repeat 2 131 0 473 259 46 9 chr15 1459613 1459951 -84235803 + (CTAGGG)n Simple_repeat Simple_repeat 1 350 0 203 130 0 22 chr15 1459969 1460015 -84235739 + (CAGGG)n Simple_repeat Simple_repeat 3 47 0 213 156 0 74 chr15 1460098 1460233 -84235521 + (CAGGG)n Simple_repeat Simple_repeat 1 125 0 415 260 48 0 chr15 1460289 1460435 -84235319 + (CTAGGG)n Simple_repeat Simple_repeat 2 154 0 359 286 48 0 chr15 1460554 1460722 -84235032 + (CTAGGG)n Simple_repeat Simple_repeat 2 177 0 209 238 16 76 chr15 1460673 1460858 -84234896 + (CAAGG)n Simple_repeat Simple_repeat 2 175 0 * 336 198 6 72 chr15 1460806 1460973 -84234781 + (CAGGG)n Simple_repeat Simple_repeat 1 156 0 236 183 0 59 chr15 1461052 1461221 -84234533 + (CAGGG)n Simple_repeat Simple_repeat 2 160 0 815 276 109 35 chr15 1462045 1462397 -84233357 - HSREP522 Satellite telomeric -171 377 1 4123 214 61 37 chr15 1462528 1463750 -84232004 + L1 LINE L1 2785 4035 -2111 625 96 0 0 chr15 1463754 1463837 -84231917 + AluJb SINE Alu 208 290 -22 943 152 0 24 chr15 1463868 1464032 -84231722 + AluJo SINE Alu 6 165 -147 2608 187 36 13 chr15 1464032 1464584 -84231170 + L1MB7 LINE L1 5599 6163 -21 22 35 0 0 chr15 1464770 1464799 -84230955 + AT_rich Low_complexity Low_complexity 1 29 0 647 197 0 47 chr15 1464799 1464926 -84230828 + FLAM_A SINE Alu 1 121 -12 2084 131 0 3 chr15 1464935 1465241 -84230513 + AluSx SINE Alu 1 305 -7 350 186 17 0 chr15 1465241 1465300 -84230454 - L1MC4 LINE L1 -1340 6702 6643 1495 160 45 17 chr15 1465447 1465734 -84230020 + AluSx SINE Alu 1 295 -17 2049 136 0 3 chr15 1465737 1466046 -84229708 + AluSx SINE Alu 1 308 -4 1266 171 35 52 chr15 1466315 1466602 -84229152 - AluJo SINE Alu -30 282 1 343 342 8 17 chr15 1466794 1466911 -84228843 - L2 LINE L2 0 3272 3157 186 118 0 0 chr15 1467468 1467502 -84228252 + (CA)n Simple_repeat Simple_repeat 2 35 0 2242 61 14 0 chr15 1468389 1468682 -84227072 - AluY SINE Alu -14 297 1 226 368 18 36 chr15 1468790 1468956 -84226798 + MIR SINE MIR 12 174 -88 2596 127 90 19 chr15 1468988 1469475 -84226279 - Tigger3(Golem) DNA MER2_type -3 3026 2505 2096 121 0 9 chr15 1469475 1469790 -84225964 + AluSq SINE Alu 2 313 0 528 321 24 6 chr15 1470149 1470317 -84225437 + MIR SINE MIR 13 183 -79 638 272 75 55 chr15 1470439 1470693 -84225061 + MER46C DNA MER2_type 80 338 0 1959 139 0 3 chr15 1470981 1471282 -84224472 + AluSx SINE Alu 1 300 -12 1845 163 0 0 chr15 1471966 1472261 -84223493 + AluSx SINE Alu 1 295 -17 189 0 0 0 chr15 1472307 1472328 -84223426 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1419 165 32 36 chr15 1473767 1473904 -84221850 + AluJo SINE Alu 1 137 -175 2071 130 3 0 chr15 1473904 1474205 -84221549 + AluSx SINE Alu 1 302 -10 1419 165 32 36 chr15 1474205 1474346 -84221408 + AluJo SINE Alu 137 278 -34 367 180 33 16 chr15 1474346 1474468 -84221286 + GA-rich Low_complexity Low_complexity 4 127 0 477 125 0 14 chr15 1474468 1474540 -84221214 + AluS SINE Alu 3 73 -239 2025 134 3 0 chr15 1474751 1475056 -84220698 + AluSq SINE Alu 1 306 -7 803 243 6 0 chr15 1475090 1475271 -84220483 + AluJo SINE Alu 122 303 -9 209 333 42 25 chr15 1475306 1475426 -84220328 - MIR SINE MIR -57 151 30 1891 166 55 19 chr15 1476270 1476632 -84219122 + THE1C LTR MaLR 1 375 0 1432 134 0 0 chr15 1477205 1477422 -84218332 + AluSg/x SINE Alu 85 301 -9 514 254 90 9 chr15 1478357 1478529 -84217225 - MIR SINE MIR -56 206 22 1717 142 4 4 chr15 1478914 1479188 -84216566 + AluJb SINE Alu 1 274 -38 433 255 172 14 chr15 1479740 1479885 -84215869 - MER5B DNA MER1_type -7 171 4 213 39 0 0 chr15 1479908 1479934 -84215820 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1658 142 3 20 chr15 1479943 1480238 -84215516 - TAR1 Satellite telomeric -297 1814 1525 467 306 138 56 chr15 1480621 1481287 -84214467 - L1MEd LINE L1 -5353 766 46 339 181 86 9 chr15 1481800 1481905 -84213849 + MIR3 SINE MIR 81 193 -15 1160 201 108 0 chr15 1482691 1482940 -84212814 + MER68 LTR ERV1 287 562 0 2937 231 84 58 chr15 1482942 1483073 -84212681 - L1 LINE L1 -1208 5959 5833 2080 92 0 74 chr15 1483073 1483399 -84212355 - AluY SINE Alu -9 302 1 2937 231 84 58 chr15 1483399 1483481 -84212273 - L1 LINE L1 -1334 5833 5755 1967 147 0 3 chr15 1483481 1483793 -84211961 - AluSq SINE Alu -2 311 1 2937 231 84 58 chr15 1483793 1484200 -84211554 - L1 LINE L1 -1412 5755 5360 1770 166 3 3 chr15 1484200 1484502 -84211252 + AluJb SINE Alu 1 302 -10 2937 231 84 58 chr15 1484502 1485044 -84210710 - L1 LINE L1 -1807 5360 4765 810 170 107 13 chr15 1485097 1485120 -84210634 - FRAM SINE Alu -141 171 152 255 31 0 0 chr15 1485120 1485152 -84210602 + (TA)n Simple_repeat Simple_repeat 2 33 0 186 103 0 0 chr15 1485151 1485180 -84210574 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 * 810 170 107 13 chr15 1485152 1485315 -84210439 - FRAM SINE Alu -160 152 1 27 49 0 0 chr15 1485330 1485371 -84210383 + AT_rich Low_complexity Low_complexity 1 41 0 1990 119 36 10 chr15 1485400 1485702 -84210052 - AluSx SINE Alu -2 310 1 1921 133 23 0 chr15 1486462 1486763 -84208991 + AluSx SINE Alu 1 308 -4 1906 123 0 14 chr15 1487257 1487542 -84208212 - AluSx SINE Alu -19 293 13 492 262 16 27 chr15 1487642 1487730 -84208024 - L1 LINE L1 -2383 4784 4697 396 0 0 0 chr15 1487730 1487774 -84207980 + (TG)n Simple_repeat Simple_repeat 2 45 0 492 262 16 27 chr15 1487774 1487868 -84207886 - L1 LINE L1 -2470 4697 4604 2231 218 15 17 chr15 1487910 1488378 -84207376 - L1 LINE L1 -5941 1227 761 1169 206 86 86 chr15 1488440 1488872 -84206882 + MSTB1 LTR MaLR 1 432 0 1347 221 246 10 chr15 1488881 1489364 -84206390 - L1 LINE L1 -6571 597 1 649 269 187 26 chr15 1489487 1489877 -84205877 - L1ME3A LINE L1 -1 6169 5717 314 198 0 74 chr15 1490047 1490128 -84205626 - L1ME3A LINE L1 -2241 5544 5470 379 303 61 6 chr15 1490149 1490314 -84205440 - L1MEd LINE L1 -5943 176 3 1351 95 37 0 chr15 1490631 1490821 -84204933 + AluY SINE Alu 106 302 -9 2175 103 3 0 chr15 1491029 1491319 -84204435 + AluSx SINE Alu 1 291 -21 1155 193 82 4 chr15 1491535 1491805 -84203949 - L1ME3A LINE L1 -769 5377 5087 309 266 16 57 chr15 1492256 1492380 -84203374 + Charlie1 DNA MER1_type 1 119 -2642 432 195 57 24 chr15 1492490 1492613 -84203141 + Charlie1 DNA MER1_type 2523 2649 -112 275 294 84 0 chr15 1492643 1492762 -84202992 - L1MA9 LINE L1 -5 6307 6179 979 161 134 28 chr15 1493323 1493577 -84202177 + AluJo SINE Alu 1 281 -31 857 199 61 30 chr15 1493588 1493696 -84202058 - Charlie5 DNA MER1_type -119 2505 2402 2179 105 0 7 chr15 1493696 1494002 -84201752 - AluSq SINE Alu -9 304 1 857 199 61 30 chr15 1494002 1494124 -84201630 - Charlie5 DNA MER1_type -222 2402 2268 477 164 103 0 chr15 1494143 1494259 -84201495 - MER3 DNA MER1_type -41 168 41 232 278 142 57 chr15 1494262 1494731 -84201023 - L2 LINE L2 -208 3064 2554 193 312 18 46 chr15 1494802 1494911 -84200843 - L2 LINE L2 -987 2327 2222 735 107 116 16 chr15 1494991 1495112 -84200642 - FLAM_C SINE Alu 0 133 1 499 280 63 7 chr15 1495372 1495515 -84200239 + MIR SINE MIR 42 192 -70 4958 128 85 15 chr15 1495519 1495578 -84200176 - Tigger2 DNA MER2_type 0 2718 2665 2120 106 14 0 chr15 1495578 1495870 -84199884 + AluSg SINE Alu 1 296 -14 4958 128 85 15 chr15 1495870 1496656 -84199098 - Tigger2 DNA MER2_type -53 2665 1814 1587 185 58 48 chr15 1496633 1496989 -84198765 + MER49 LTR ERV1 515 866 -57 * 1879 148 0 16 chr15 1496989 1497294 -84198460 + AluSx SINE Alu 6 305 -7 1478 162 8 15 chr15 1497304 1497563 -84198191 + AluJo SINE Alu 1 257 -55 1587 185 58 48 chr15 1497563 1497590 -84198164 + MER49 LTR ERV1 874 913 -10 672 125 0 0 chr15 1497616 1497720 -84198034 - Tigger2 DNA MER2_type -1742 976 873 786 204 40 28 chr15 1497735 1497911 -84197843 - AluJb SINE Alu -1 311 134 4316 126 64 29 chr15 1497911 1498676 -84197078 - Tigger2 DNA MER2_type -1833 885 94 505 175 0 0 chr15 1498689 1498769 -84196985 - AluJ/FLAM SINE Alu -229 83 4 445 158 13 0 chr15 1498772 1498848 -84196906 - Tigger2 DNA MER2_type -1831 887 811 721 161 0 9 chr15 1498902 1499014 -84196740 + FLAM_C SINE Alu 3 113 -30 1972 125 0 29 chr15 1499019 1499330 -84196424 - AluSc SINE Alu -7 302 1 363 181 0 42 chr15 1499372 1499444 -84196310 - Tigger2 DNA MER2_type -2649 69 1 957 236 71 13 chr15 1499585 1500405 -84195349 - L1ME1 LINE L1 -142 6024 5032 2983 167 70 2 chr15 1500434 1500978 -84194776 - ERVL LTR ERVL -357 5407 4827 803 142 0 0 chr15 1500978 1501091 -84194663 - AluSq/x SINE Alu -198 114 2 8338 247 61 32 chr15 1501114 1503539 -84192215 - L1MC/D LINE L1 -743 5797 3445 1658 153 28 17 chr15 1503539 1503827 -84191927 - AluJb SINE Alu -21 291 1 8338 247 61 32 chr15 1503827 1504489 -84191265 - L1MC/D LINE L1 -3095 3445 2687 2778 13 0 0 chr15 1504489 1504800 -84190954 - AluY SINE Alu 0 311 1 8338 247 61 32 chr15 1504800 1504922 -84190832 - L1MC/D LINE L1 -3853 2687 2570 1026 256 120 50 chr15 1504997 1505512 -84190242 - MER77 LTR ERV1 -1 604 54 3114 245 94 17 chr15 1505543 1506779 -84188975 - L1MDb LINE L1 -4012 2528 1106 1491 180 3 49 chr15 1506779 1507106 -84188648 - AluJo SINE Alu 0 312 1 3114 245 94 17 chr15 1507106 1507383 -84188371 - L1MDb LINE L1 -5434 1106 852 731 276 62 23 chr15 1507554 1507811 -84187943 - L1MDb LINE L1 -6212 328 62 476 317 100 42 chr15 1508958 1509267 -84186487 + HAL1 LINE L1 1246 1572 -935 873 127 8 0 chr15 1509602 1509736 -84186018 + AluSq/x SINE Alu 1 135 -177 2035 118 0 0 chr15 1509736 1510032 -84185722 + AluSx SINE Alu 1 296 -16 700 184 45 11 chr15 1510176 1510361 -84185393 - L1M3 LINE L1 -661 5510 5288 182 216 0 0 chr15 1510440 1510477 -84185277 + L2 LINE L2 3261 3297 -16 749 260 27 14 chr15 1512589 1512816 -84182938 + LTR33 LTR ERVL 35 252 -271 348 288 15 15 chr15 1512868 1513000 -84182754 + LTR33 LTR ERVL 382 513 -8 259 247 55 0 chr15 1513543 1513616 -84182138 - MIR3 SINE MIR -5 203 127 1994 150 3 35 chr15 1514672 1514860 -84180894 + L1M3 LINE L1 5442 5616 -555 2376 108 93 18 chr15 1514860 1515258 -84180496 + MSTA LTR MaLR 1 428 0 1994 150 3 35 chr15 1515258 1515415 -84180339 + L1M3 LINE L1 5616 5776 -395 321 303 110 0 chr15 1516822 1516931 -84178823 + L2 LINE L2 3143 3263 -9 199 346 59 0 chr15 1516948 1517049 -84178705 + MIR SINE MIR 34 140 -122 258 32 0 0 chr15 1517102 1517133 -84178621 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 261 98 0 0 chr15 1517132 1517173 -84178581 + (TA)n Simple_repeat Simple_repeat 1 41 0 15172 80 10 1 chr15 1519397 1522182 -84173572 - L1PA7 LINE L1 -4 6150 3338 15743 116 13 22 chr15 1522290 1524760 -84170994 - L1PA7 LINE L1 -3076 3070 625 726 273 125 13 chr15 1525305 1525725 -84170029 + L2 LINE L2 2530 3052 -261 207 167 0 0 chr15 1525828 1525870 -84169884 + L2 LINE L2 3231 3272 0 25 0 0 0 chr15 1526144 1526169 -84169585 + AT_rich Low_complexity Low_complexity 1 25 0 1665 243 92 27 chr15 1526264 1526745 -84169009 + LTR33 LTR ERVL 4 515 -6 2281 105 7 0 chr15 1526751 1527047 -84168707 - AluSg SINE Alu -12 298 1 8541 60 6 91 chr15 1527661 1528922 -84166832 - SVA Other Other -7 1379 226 290 302 78 8 chr15 1529227 1529356 -84166398 + MIR SINE MIR 51 188 -74 1916 178 79 5 chr15 1529366 1529760 -84165994 + L1MC2 LINE L1 5917 6339 -5 30 45 0 0 chr15 1529782 1529826 -84165928 + AT_rich Low_complexity Low_complexity 1 44 0 475 294 20 7 chr15 1530779 1530932 -84164822 - MER103 DNA DNA 0 166 12 2317 112 3 0 chr15 1531016 1531319 -84164435 + AluSx SINE Alu 1 304 -8 28 0 0 0 chr15 1531450 1531478 -84164276 + AT_rich Low_complexity Low_complexity 1 28 0 375 0 0 0 chr15 1531756 1531799 -84163955 - MADE1 DNA Mariner 0 80 38 333 23 23 0 chr15 1532603 1532646 -84163108 + MADE1 DNA Mariner 37 80 0 380 313 37 82 chr15 1532739 1532931 -84162823 + MIR SINE MIR 6 184 -78 1590 167 36 4 chr15 1532931 1533054 -84162700 + AluJb SINE Alu 1 119 -193 360 0 0 0 chr15 1533054 1533094 -84162660 + (CA)n Simple_repeat Simple_repeat 2 41 0 1590 167 36 4 chr15 1533094 1533246 -84162508 + AluJb SINE Alu 119 285 -27 380 313 37 82 chr15 1533246 1533321 -84162433 + MIR SINE MIR 184 261 -1 200 307 157 30 chr15 1535817 1536276 -84159478 + L2 LINE L2 2118 2634 -680 863 186 56 0 chr15 1536525 1536686 -84159068 - FAM SINE Alu -5 170 1 347 319 50 0 chr15 1536688 1536807 -84158947 + L2 LINE L2 3125 3249 -23 219 36 0 0 chr15 1537340 1537368 -84158386 + (A)n Simple_repeat Simple_repeat 1 28 0 1848 176 38 61 chr15 1537429 1537906 -84157848 - MLT1C LTR MaLR -1 466 1 811 189 34 34 chr15 1538569 1538744 -84157010 + FAM SINE Alu 1 175 0 22 35 0 0 chr15 1538744 1538773 -84156981 + AT_rich Low_complexity Low_complexity 1 29 0 1744 172 40 3 chr15 1538815 1539112 -84156642 + AluJo SINE Alu 1 308 -4 541 194 191 53 chr15 1539235 1539435 -84156319 - L1ME4a LINE L1 -4 6117 5946 1834 141 27 13 chr15 1539435 1539733 -84156021 - AluJb SINE Alu -10 302 1 541 194 191 53 chr15 1539733 1539887 -84155867 - L1ME4a LINE L1 -175 5946 5714 361 203 0 0 chr15 1540137 1540206 -84155548 + AluJ/FLAM SINE Alu 1 69 -233 231 186 0 0 chr15 1540244 1540287 -84155467 + G-rich Low_complexity Low_complexity 5 47 0 834 175 111 11 chr15 1540290 1540479 -84155275 + MER50 LTR ERV1 33 240 -494 * 1855 126 11 7 chr15 1540462 1540740 -84155014 + MER50 LTR ERV1 433 711 -23 292 254 0 0 chr15 1540744 1540799 -84154955 + FLAM SINE Alu 71 125 -8 186 328 107 8 chr15 1541056 1541187 -84154567 + MIR SINE MIR 3 146 -116 188 287 210 19 chr15 1541219 1541376 -84154378 - MIR SINE MIR -54 208 22 928 193 49 34 chr15 1541524 1541789 -84153965 - MER96B DNA MER1_type? 0 417 149 2296 72 31 7 chr15 1541820 1542113 -84153641 + AluY SINE Alu 1 300 -11 21 0 0 0 chr15 1542232 1542253 -84153501 + AT_rich Low_complexity Low_complexity 1 21 0 2119 88 56 7 chr15 1542308 1542592 -84153162 - AluSq SINE Alu -15 298 1 2188 120 7 0 chr15 1543790 1544098 -84151656 + AluSg SINE Alu 1 310 0 2294 104 0 0 chr15 1544158 1544456 -84151298 + AluSc SINE Alu 1 298 -11 662 137 24 0 chr15 1544505 1544629 -84151125 + L1MB3 LINE L1 6041 6167 -16 21 36 0 0 chr15 1544673 1544701 -84151053 + AT_rich Low_complexity Low_complexity 1 28 0 2144 118 10 7 chr15 1544866 1545163 -84150591 - AluSx SINE Alu -14 298 1 1407 202 65 110 chr15 1545176 1545687 -84150067 + MER20B DNA MER1_type 64 551 -232 21 0 0 0 chr15 1545687 1545708 -84150046 + AT_rich Low_complexity Low_complexity 1 21 0 2396 88 0 0 chr15 1546553 1546847 -84148907 + AluSg1 SINE Alu 2 295 -14 466 248 61 43 chr15 1546961 1547125 -84148629 + L1ME4a LINE L1 5696 5876 -245 1963 159 10 0 chr15 1547125 1547427 -84148327 + AluJb SINE Alu 2 306 -6 466 248 61 43 chr15 1547427 1547554 -84148200 + L1ME4a LINE L1 5876 5999 -122 268 338 81 5 chr15 1547997 1548354 -84147400 + L2 LINE L2 2593 2981 -291 2866 69 11 16 chr15 1548356 1548733 -84147021 + THE1C LTR MaLR 1 375 0 359 326 62 17 chr15 1548880 1549058 -84146696 + MIR SINE MIR 25 210 -52 238 274 20 78 chr15 1549186 1549288 -84146466 + L2 LINE L2 2992 3087 -185 312 299 47 19 chr15 1549519 1549626 -84146128 + L2 LINE L2 3163 3272 0 487 287 91 35 chr15 1550237 1550674 -84145080 + LTR33 LTR ERVL 23 521 0 655 221 23 0 chr15 1550702 1550833 -84144921 + MER94 DNA DNA 1 134 0 2047 134 7 0 chr15 1553268 1553559 -84142195 + AluSx SINE Alu 1 293 -19 731 161 0 0 chr15 1553634 1553752 -84142002 - FLAM_A SINE Alu -15 127 10 468 86 0 0 chr15 1553779 1553849 -84141905 - Alu SINE Alu 0 312 243 1386 82 66 6 chr15 1553961 1554143 -84141611 - AluY SINE Alu -118 193 1 928 156 0 19 chr15 1554278 1554432 -84141322 + AluJb SINE Alu 140 290 -22 225 154 77 0 chr15 1554440 1554505 -84141249 + GA-rich Low_complexity Low_complexity 1 70 0 466 60 0 0 chr15 1554685 1554752 -84141002 - Alu SINE Alu 0 310 244 754 147 16 0 chr15 1554752 1554881 -84140873 - L1MB3 LINE L1 -41 6142 6012 2035 141 3 0 chr15 1555116 1555430 -84140324 + AluSx SINE Alu 1 315 0 316 296 44 0 chr15 1555970 1556086 -84139668 - MIR SINE MIR -53 155 34 38 39 0 0 chr15 1556257 1556309 -84139445 + AT_rich Low_complexity Low_complexity 1 52 0 2092 141 0 3 chr15 1556315 1556614 -84139140 + AluSq SINE Alu 1 298 -15 612 246 0 0 chr15 1556616 1556738 -84139016 + FLAM_A SINE Alu 1 122 -11 979 188 11 11 chr15 1556772 1556953 -84138801 + AluJo SINE Alu 1 181 -131 1403 117 117 0 chr15 1556954 1557167 -84138587 - AluSx SINE Alu -15 297 60 710 182 0 0 chr15 1557173 1557294 -84138460 + AluJo SINE Alu 190 310 -2 1453 191 57 7 chr15 1557312 1557595 -84138159 + AluJb SINE Alu 1 297 -15 2009 157 0 0 chr15 1557596 1557890 -84137864 - AluSx SINE Alu -18 294 1 2506 68 0 0 chr15 1557898 1558191 -84137563 - AluY SINE Alu -18 293 1 21 0 0 0 chr15 1558198 1558219 -84137535 + AT_rich Low_complexity Low_complexity 1 21 0 284 321 28 0 chr15 1558346 1558455 -84137299 - MIR SINE MIR -139 123 12 2074 126 11 0 chr15 1558775 1559061 -84136693 + AluSg SINE Alu 4 292 -18 1026 116 60 101 chr15 1559063 1559124 -84136630 - L1MB7 LINE L1 -16 6168 6106 1985 127 0 17 chr15 1559124 1559423 -84136331 - AluJo SINE Alu -13 299 6 1026 116 60 101 chr15 1559423 1559629 -84136125 - L1MB7 LINE L1 -78 6106 5912 409 304 192 14 chr15 1559633 1560117 -84135637 + L2 LINE L2 1823 2392 -922 306 166 59 27 chr15 1560123 1560230 -84135524 + AluJ/FLAM SINE Alu 2 86 -216 887 192 11 6 chr15 1560413 1560590 -84135164 + FRAM SINE Alu 1 173 -3 272 297 60 22 chr15 1560639 1560824 -84134930 + L2 LINE L2 2434 2625 -689 379 338 163 12 chr15 1560929 1561352 -84134402 + L2 LINE L2 2827 3313 0 1844 145 28 3 chr15 1561463 1561745 -84134009 - AluSx SINE Alu -23 289 1 1612 168 0 67 chr15 1562025 1562159 -84133595 + AluJo SINE Alu 1 142 -170 2470 83 0 0 chr15 1562159 1562461 -84133293 + AluY SINE Alu 1 302 -9 1612 168 0 67 chr15 1562461 1562641 -84133113 + AluJo SINE Alu 142 294 -18 1559 142 4 0 chr15 1563094 1563319 -84132435 + AluSq SINE Alu 35 260 -53 1714 131 0 46 chr15 1563347 1563483 -84132271 + AluSx SINE Alu 1 121 -191 2176 110 0 10 chr15 1563483 1563784 -84131970 + AluSg SINE Alu 1 298 -12 1714 131 0 46 chr15 1563784 1563907 -84131847 + AluSx SINE Alu 121 248 -64 2103 118 45 0 chr15 1564502 1564790 -84130964 - AluSx SINE Alu -11 301 1 1747 155 7 20 chr15 1564841 1565138 -84130616 + AluJo SINE Alu 17 309 -3 1837 170 7 0 chr15 1565143 1565432 -84130322 + AluJo SINE Alu 1 291 -21 23 0 0 0 chr15 1565432 1565455 -84130299 + AT_rich Low_complexity Low_complexity 1 23 0 2038 131 3 0 chr15 1565498 1565803 -84129951 + AluSx SINE Alu 1 306 -6 1664 160 25 110 chr15 1565819 1566218 -84129536 + MLT1A1 LTR MaLR 1 365 0 1865 124 4 4 chr15 1566418 1566693 -84129061 + AluSg SINE Alu 1 275 -35 1801 116 40 4 chr15 1566986 1567284 -84128470 + AluSq SINE Alu 1 308 0 1116 144 5 21 chr15 1567394 1567582 -84128172 - AluJb SINE Alu -26 286 102 929 122 0 67 chr15 1567683 1567847 -84127907 - AluJo SINE Alu -159 153 1 539 256 56 17 chr15 1567847 1568027 -84127727 - MER47A DNA MER2_type -179 187 1 486 0 0 0 chr15 1569931 1569985 -84125769 + (TG)n Simple_repeat Simple_repeat 2 55 0 345 186 0 14 chr15 1571263 1571333 -84124421 - MLT1D LTR MaLR -7 498 430 228 302 83 0 chr15 1571351 1571447 -84124307 - U13 snRNA snRNA 0 104 1 * 780 223 51 17 chr15 1571443 1571850 -84123904 - MLT1D LTR MaLR -47 458 5 1513 178 13 7 chr15 1572186 1572489 -84123265 - AluJb SINE Alu -2 310 6 1871 126 3 30 chr15 1572511 1572813 -84122941 - AluSq SINE Alu -19 294 1 1386 185 57 4 chr15 1573832 1574113 -84121641 + AluJo SINE Alu 1 296 -16 2138 105 0 3 chr15 1574115 1574411 -84121343 + AluSx SINE Alu 1 295 -17 262 238 131 0 chr15 1574456 1574540 -84121214 - L1MC5 LINE L1 -866 7095 7001 2286 93 0 3 chr15 1575126 1575437 -84120317 - AluSp SINE Alu -3 310 1 876 188 109 0 chr15 1575437 1575593 -84120161 - AluJb SINE Alu -12 300 118 477 0 0 0 chr15 1575593 1575646 -84120108 + (TG)n Simple_repeat Simple_repeat 2 54 0 876 188 109 0 chr15 1575646 1575681 -84120073 - AluJb SINE Alu -194 118 88 191 114 29 0 chr15 1577420 1577455 -84118299 + CT-rich Low_complexity Low_complexity 2 37 0 4766 168 23 39 chr15 1577563 1578462 -84117292 + MER49 LTR ERV1 37 921 -2 222 37 0 0 chr15 1578474 1578501 -84117253 + (CA)n Simple_repeat Simple_repeat 2 28 0 840 238 21 0 chr15 1578501 1578684 -84117070 + ERVL LTR ERVL 1003 1189 -4575 313 146 10 21 chr15 1578686 1578782 -84116972 + (TTGG)n Simple_repeat Simple_repeat 1 95 0 3148 264 33 6 chr15 1578785 1579604 -84116150 + ERVL LTR ERVL 1174 2014 -3750 606 211 0 0 chr15 1579605 1579709 -84116045 - AluJ SINE Alu -207 105 2 1898 95 23 56 chr15 1579797 1579961 -84115793 - AluSg SINE Alu -15 295 144 2190 104 0 7 chr15 1579961 1580268 -84115486 - AluY SINE Alu -6 305 1 1898 95 23 56 chr15 1580268 1580408 -84115346 - AluSg SINE Alu -166 144 1 1955 135 0 0 chr15 1580903 1581191 -84114563 - AluSx SINE Alu -24 288 1 290 87 0 0 chr15 1581195 1581241 -84114513 - L1PA13 LINE L1 -129 6034 5989 * 1738 152 7 112 chr15 1581238 1581385 -84114369 + L1PA16 LINE L1 5769 5930 -236 3217 103 0 2 chr15 1581385 1581833 -84113921 - L1PA7 LINE L1 0 6154 5708 1738 152 7 112 chr15 1581833 1582105 -84113649 + L1PA16 LINE L1 5930 6144 -22 1531 161 15 68 chr15 1582110 1582201 -84113553 + L1PA16 LINE L1 5611 5705 -461 1973 113 7 0 chr15 1582201 1582483 -84113271 - AluSx SINE Alu -6 306 23 1531 161 15 68 chr15 1582483 1582715 -84113039 + L1PA16 LINE L1 5705 5917 -249 919 152 6 6 chr15 1582716 1582874 -84112880 + L1PA16 LINE L1 5761 5918 -248 994 145 0 6 chr15 1582875 1583034 -84112720 + L1PA16 LINE L1 5762 5919 -247 894 144 12 12 chr15 1583034 1583194 -84112560 + L1PA16 LINE L1 5762 5921 -245 * 1376 185 2 11 chr15 1583187 1583625 -84112129 + L1PA16 LINE L1 5718 6033 -133 2319 92 0 0 chr15 1583730 1584033 -84111721 - AluSx SINE Alu -9 303 1 572 186 0 0 chr15 1584168 1584310 -84111444 + L1PA16 LINE L1 6040 6181 0 367 276 4 15 chr15 1585513 1585779 -84109975 + (TG)n Simple_repeat Simple_repeat 1 262 0 344 148 0 0 chr15 1585791 1585845 -84109909 - Alu SINE Alu -3 298 245 1169 125 0 0 chr15 1585847 1586015 -84109739 + AluSg/x SINE Alu 94 261 -49 702 91 0 64 chr15 1586015 1586389 -84109365 + (CAGC)n Simple_repeat Simple_repeat 1 349 0 899 70 2 68 chr15 1586436 1587073 -84108681 + (CAGC)n Simple_repeat Simple_repeat 1 594 0 510 95 0 67 chr15 1587103 1587282 -84108472 + (CAGC)n Simple_repeat Simple_repeat 4 170 0 960 31 0 65 chr15 1587324 1587708 -84108046 + (CAGC)n Simple_repeat Simple_repeat 1 358 0 704 68 0 68 chr15 1587734 1587924 -84107830 + (CAGC)n Simple_repeat Simple_repeat 2 178 0 809 67 0 76 chr15 1587967 1588554 -84107200 + (CAGC)n Simple_repeat Simple_repeat 1 542 0 839 69 0 77 chr15 1588573 1589652 -84106102 + (CAGC)n Simple_repeat Simple_repeat 1 995 0 837 52 0 63 chr15 1589683 1589874 -84105880 + (CAGC)n Simple_repeat Simple_repeat 2 180 0 317 308 0 0 chr15 1590166 1590244 -84105510 + L2 LINE L2 3195 3272 0 235 243 230 0 chr15 1590272 1590346 -84105408 + L2 LINE L2 2605 2695 -619 192 182 0 0 chr15 1592166 1592210 -84103544 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 246 182 0 0 chr15 1592454 1592498 -84103256 - MLT1C LTR MaLR -17 488 445 635 223 117 51 chr15 1592506 1592780 -84102974 - MLT1C LTR MaLR -173 294 3 1127 292 16 7 chr15 1595381 1595689 -84100065 + L1MD2 LINE L1 20 330 -6079 561 251 18 54 chr15 1595698 1595865 -84099889 + L1MD2 LINE L1 388 548 -5861 427 123 27 0 chr15 1595865 1595938 -84099816 - MSTD LTR MaLR 0 396 322 5659 245 63 48 chr15 1596284 1597896 -84097858 + L1MD2 LINE L1 2661 4247 -2372 1963 173 64 50 chr15 1597896 1598318 -84097436 + MSTA LTR MaLR 1 428 0 5659 245 63 48 chr15 1598318 1600557 -84095197 + L1MD2 LINE L1 4247 6601 -18 419 358 32 5 chr15 1601904 1602094 -84093660 - L2 LINE L2 -1300 2014 1820 1235 121 0 0 chr15 1602094 1602276 -84093478 + L1PA10 LINE L1 5987 6168 0 1650 209 73 19 chr15 1602281 1602706 -84093048 + L1MB4 LINE L1 5731 6178 -2 53 30 0 0 chr15 1603401 1603468 -84092286 + AT_rich Low_complexity Low_complexity 1 67 0 245 300 43 0 chr15 1604005 1604075 -84091679 - L2 LINE L2 -2 3270 3198 21 0 0 0 chr15 1604445 1604466 -84091288 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr15 1604679 1604702 -84091052 + AT_rich Low_complexity Low_complexity 1 23 0 198 358 70 30 chr15 1605086 1605227 -84090527 - MIR3 SINE MIR -78 130 14 204 163 23 0 chr15 1606224 1606267 -84089487 + (TA)n Simple_repeat Simple_repeat 1 44 0 194 281 103 62 chr15 1606291 1606437 -84089317 - MIR SINE MIR -59 203 52 528 157 88 0 chr15 1606900 1607002 -84088752 + MER20 DNA MER1_type 77 187 -32 279 255 149 56 chr15 1607083 1607244 -84088510 + LTR16A LTR ERVL 182 357 -93 1633 70 43 66 chr15 1607530 1607788 -84087966 + AluY SINE Alu 54 305 -6 347 248 62 26 chr15 1607788 1607901 -84087853 + HERV16 LTR ERVL 86 202 -4794 1030 298 65 49 chr15 1607938 1608488 -84087266 + HERV16 LTR ERVL 192 750 -4246 6088 58 1 4 chr15 1608488 1609261 -84086493 - L1P LINE L1 -1725 4421 3651 7045 72 1 4 chr15 1609261 1610886 -84084868 + L1PA8 LINE L1 4551 6172 0 230 279 63 13 chr15 1611465 1611544 -84084210 + L2 LINE L2 3231 3313 0 1601 214 70 62 chr15 1611558 1611994 -84083760 + MLT1D LTR MaLR 1 443 -62 1765 101 79 8 chr15 1611994 1612261 -84083493 - AluSc SINE Alu -23 286 1 1601 214 70 62 chr15 1612261 1612325 -84083429 + MLT1D LTR MaLR 443 505 0 301 329 134 12 chr15 1612457 1612621 -84083133 + MIR SINE MIR 8 191 -71 310 292 142 31 chr15 1612901 1613127 -84082627 + MIR SINE MIR 12 262 0 330 240 74 50 chr15 1613271 1613392 -84082362 + L2 LINE L2 3187 3310 -3 253 284 4 13 chr15 1613549 1613625 -84082129 + MIR SINE MIR 65 144 -64 2827 165 0 25 chr15 1613783 1614293 -84081461 - LOR1a LTR ERV1 0 497 1 190 195 0 0 chr15 1616136 1616177 -84079577 - MIR SINE MIR -50 212 172 1425 198 74 14 chr15 1616797 1617241 -84078513 - L1M4 LINE L1 -1495 5045 4575 990 265 86 23 chr15 1617378 1618208 -84077546 - L1MDa LINE L1 -3257 3283 2394 305 256 108 77 chr15 1618351 1618546 -84077208 - L1M4 LINE L1 -1481 4665 4465 261 275 69 47 chr15 1618576 1618940 -84076814 - L1M4 LINE L1 -1716 4430 4059 4810 159 44 12 chr15 1619149 1619641 -84076113 - L1MA7 LINE L1 0 6291 5816 225 0 0 0 chr15 1619641 1619666 -84076088 + (TG)n Simple_repeat Simple_repeat 2 26 0 4810 159 44 12 chr15 1619666 1620364 -84075390 - L1MA7 LINE L1 -475 5816 5064 1920 176 40 0 chr15 1620366 1620631 -84075123 - L1P LINE L1 -1470 4676 4388 333 0 0 0 chr15 1620631 1620668 -84075086 + (TG)n Simple_repeat Simple_repeat 1 37 0 1920 176 40 0 chr15 1620668 1620799 -84074955 - L1P LINE L1 -1758 4388 4264 331 298 119 23 chr15 1620887 1621105 -84074649 - L1M4 LINE L1 -3229 2917 2679 29 84 0 0 chr15 1622738 1622809 -84072945 + AT_rich Low_complexity Low_complexity 1 71 0 239 331 61 14 chr15 1623553 1623701 -84072053 - MIR SINE MIR -57 205 51 2046 138 0 10 chr15 1624988 1625279 -84070475 + AluSx SINE Alu 1 288 -24 21 82 0 0 chr15 1625443 1625492 -84070262 + AT_rich Low_complexity Low_complexity 1 49 0 3621 165 90 4 chr15 1625579 1626300 -84069454 - L1PA8 LINE L1 0 6172 5390 3296 256 23 13 chr15 1626300 1627342 -84068412 + L1P LINE L1 1067 2118 -4028 1703 184 31 0 chr15 1627342 1627630 -84068124 - AluJb SINE Alu -13 299 3 395 290 83 5 chr15 1628318 1628535 -84067219 - L1ME3A LINE L1 -181 5989 5756 285 248 124 0 chr15 1628555 1628676 -84067078 - L1ME3A LINE L1 -474 5696 5561 3397 198 62 22 chr15 1628708 1629936 -84065818 - L1MB4 LINE L1 0 6180 4903 254 235 15 83 chr15 1630035 1630167 -84065587 - L1M2 LINE L1 -762 5404 5312 583 309 87 37 chr15 1630206 1630504 -84065250 - L1ME3A LINE L1 -933 5213 4901 29 84 0 0 chr15 1630720 1630791 -84064963 + AT_rich Low_complexity Low_complexity 1 71 0 654 313 85 20 chr15 1630792 1631369 -84064385 - L1ME3A LINE L1 -1780 4366 3828 2550 135 14 36 chr15 1631369 1631813 -84063941 + Tigger2a DNA MER2_type 1 434 0 654 313 85 20 chr15 1631813 1632254 -84063500 - L1ME3A LINE L1 -2318 3828 3281 2690 13 16 0 chr15 1632285 1632600 -84063154 - L1PA2 LINE L1 -2 6153 5834 229 278 44 44 chr15 1632882 1632972 -84062782 + MLT1H LTR MaLR 114 203 -346 311 172 21 97 chr15 1633188 1633325 -84062429 + MLT1H1 LTR MaLR 439 529 -26 298 340 21 14 chr15 1633528 1633672 -84062082 + MLT-int LTR MaLR 382 526 -1209 339 281 24 85 chr15 1633863 1634027 -84061727 - MIR3 SINE MIR -30 178 25 4218 167 50 11 chr15 1635179 1636028 -84059726 - L1MC1 LINE L1 0 6333 5452 204 122 0 0 chr15 1636695 1636736 -84059018 + (A)n Simple_repeat Simple_repeat 1 41 0 36938 39 4 0 chr15 1636921 1642423 -84053331 - L1PA4 LINE L1 -3 6152 632 208 296 120 28 chr15 1642587 1642695 -84053059 + MIR SINE MIR 90 207 -55 750 144 17 0 chr15 1642697 1642815 -84052939 - FRAM SINE Alu -14 162 43 1931 108 41 10 chr15 1643938 1644233 -84051521 + AluSx SINE Alu 1 304 -8 308 306 37 96 chr15 1644273 1644544 -84051210 - HAL1b LINE L1 -43 1305 1051 324 264 138 54 chr15 1644713 1645103 -84050651 - HAL1b LINE L1 -509 839 417 653 267 58 97 chr15 1645164 1645546 -84050208 - HAL1 LINE L1 -1391 1116 750 448 250 33 8 chr15 1646136 1646256 -84049498 + MLT1E1 LTR MaLR 5 127 -527 500 275 174 30 chr15 1646294 1646599 -84049155 + MLT1E1 LTR MaLR 305 653 -1 10357 229 76 14 chr15 1647056 1647917 -84047837 - L1PA16 LINE L1 -5 7599 6793 1499 167 50 56 chr15 1647917 1648294 -84047460 + THE1C LTR MaLR 1 375 0 10357 229 76 14 chr15 1648294 1652441 -84043313 - L1PA16 LINE L1 -811 6793 2271 296 296 10 10 chr15 1652761 1652859 -84042895 - L1PA16 LINE L1 -5399 2182 2085 788 375 19 19 chr15 1653000 1653586 -84042168 - L1PA16 LINE L1 -6201 1373 788 255 280 48 48 chr15 1654495 1654575 -84041179 + L1ME2 LINE L1 1061 1140 -5276 2274 99 10 0 chr15 1654575 1654877 -84040877 + AluSg SINE Alu 1 305 -5 255 280 48 48 chr15 1654877 1655089 -84040665 + L1ME2 LINE L1 1139 1353 -5063 346 305 65 41 chr15 1655107 1655370 -84040384 + L1ME2 LINE L1 1224 1442 -4882 1891 123 0 0 chr15 1655640 1655901 -84039853 + AluSq SINE Alu 1 261 -52 28 71 0 0 chr15 1655902 1655958 -84039796 + AT_rich Low_complexity Low_complexity 1 56 0 27 49 0 0 chr15 1656014 1656055 -84039699 + AT_rich Low_complexity Low_complexity 1 41 0 507 112 0 82 chr15 1656071 1656169 -84039585 - L1MB3 LINE L1 -41 6142 6053 1826 178 0 7 chr15 1656185 1656483 -84039271 + AluJo SINE Alu 1 296 -16 654 176 8 16 chr15 1656508 1656633 -84039121 - FLAM_A SINE Alu -9 124 1 1957 193 20 31 chr15 1656634 1657089 -84038665 - L1MB3 LINE L1 -118 6065 5616 1870 148 65 0 chr15 1657150 1657440 -84038314 - AluSx SINE Alu -3 309 1 341 198 16 95 chr15 1658516 1658613 -84037141 - MER96B DNA MER1_type? -34 383 297 2163 124 10 0 chr15 1658613 1658920 -84036834 + AluSx SINE Alu 1 310 -2 341 198 16 95 chr15 1658920 1658948 -84036806 - MER96B DNA MER1_type? -120 297 268 282 29 0 0 chr15 1658949 1658984 -84036770 + (TTTAA)n Simple_repeat Simple_repeat 3 37 0 1477 157 19 38 chr15 1658993 1659254 -84036500 - AluJo SINE Alu -56 256 1 822 290 41 0 chr15 1659297 1659518 -84036236 + MIR SINE MIR 13 242 -20 2282 96 0 0 chr15 1660010 1660301 -84035453 + AluSg SINE Alu 3 293 -17 1825 152 4 11 chr15 1660351 1660628 -84035126 + AluJo SINE Alu 1 275 -37 280 106 43 0 chr15 1660629 1660676 -84035078 + Alu SINE Alu 247 295 -7 385 197 68 8 chr15 1661397 1661514 -84034240 + L2 LINE L2 2360 2483 -831 671 155 0 14 chr15 1661522 1661664 -84034090 + C-rich Low_complexity Low_complexity 1 140 0 306 242 77 90 chr15 1662220 1662691 -84033063 + L1ME2 LINE L1 2001 6312 -132 2207 114 13 0 chr15 1662752 1663058 -84032696 + AluSg SINE Alu 1 310 0 638 235 47 35 chr15 1663480 1663650 -84032104 + MIR SINE MIR 69 240 -22 415 294 89 81 chr15 1663657 1664297 -84031457 + L1M2 LINE L1 451 1095 -5754 272 291 12 23 chr15 1665583 1665669 -84030085 + GA-rich Low_complexity Low_complexity 6 90 0 1462 175 111 43 chr15 1665842 1666213 -84029541 - MSTD LTR MaLR 0 396 1 821 122 0 0 chr15 1666628 1666743 -84029011 + AluSg/x SINE Alu 186 300 -10 4957 92 63 11 chr15 1666743 1667437 -84028317 + THE1C-int LTR MaLR 851 1580 0 1019 98 7 14 chr15 1667437 1667580 -84028174 + THE1C LTR MaLR 1 142 -233 1649 122 4 4 chr15 1667581 1667818 -84027936 + AluJo SINE Alu 76 312 0 1708 154 31 35 chr15 1667822 1668002 -84027752 + MLT1D LTR MaLR 180 360 -145 2316 96 0 0 chr15 1668002 1668304 -84027450 + AluY SINE Alu 1 302 -9 1708 154 31 35 chr15 1668304 1668441 -84027313 + MLT1D LTR MaLR 360 496 -9 2165 108 21 0 chr15 1668690 1668978 -84026776 + AluSx SINE Alu 1 294 -18 302 220 128 0 chr15 1669601 1669710 -84026044 + MIR SINE MIR 60 182 -80 180 259 19 0 chr15 1669889 1669943 -84025811 + MIR SINE MIR 30 84 -124 385 133 66 18 chr15 1670383 1670549 -84025205 + (CA)n Simple_repeat Simple_repeat 2 175 0 462 142 40 28 chr15 1670604 1670780 -84024974 + (CA)n Simple_repeat Simple_repeat 1 178 0 356 93 59 42 chr15 1670843 1670961 -84024793 + (TG)n Simple_repeat Simple_repeat 1 120 0 251 281 24 72 chr15 1671108 1671275 -84024479 + L1MC4 LINE L1 7883 8041 -1 234 266 31 0 chr15 1671436 1671500 -84024254 + MIR SINE MIR 79 144 -118 305 303 20 79 chr15 1671620 1671684 -84024070 - MER5A DNA MER1_type 0 189 123 1921 124 32 3 chr15 1671684 1671966 -84023788 + AluSx SINE Alu 1 290 -22 305 303 20 79 chr15 1671966 1672053 -84023701 - MER5A DNA MER1_type -66 123 47 2653 11 0 0 chr15 1673822 1674104 -84021650 - AluY SINE Alu -29 282 1 33 0 0 0 chr15 1675472 1675505 -84020249 + AT_rich Low_complexity Low_complexity 1 33 0 461 273 80 45 chr15 1675522 1676082 -84019672 + L1M4 LINE L1 3125 3704 -2442 3888 196 68 17 chr15 1676082 1677036 -84018718 - L1 LINE L1 -1023 5123 4121 * 5032 150 62 6 chr15 1677030 1677936 -84017818 + L1MA7 LINE L1 5334 6290 -1 2090 315 116 16 chr15 1677935 1679011 -84016743 + L1M4 LINE L1 3682 4865 -1281 * 1571 96 5 0 chr15 1679012 1679266 -84016488 + AluSg/x SINE Alu 81 335 0 464 291 11 22 chr15 1679302 1679481 -84016273 - MIR SINE MIR -1 261 85 2151 123 0 7 chr15 1679556 1679857 -84015897 + AluY SINE Alu 3 301 -10 2069 149 0 0 chr15 1679864 1680172 -84015582 + AluSx SINE Alu 1 308 -4 1974 124 11 3 chr15 1683457 1683740 -84012014 + AluSq SINE Alu 9 293 -20 23 33 0 0 chr15 1684263 1684293 -84011461 + AT_rich Low_complexity Low_complexity 1 30 0 348 281 74 35 chr15 1684569 1684800 -84010954 - MIR SINE MIR -7 255 16 404 253 10 10 chr15 1687508 1687607 -84008147 + MER94 DNA DNA 2 100 -34 21 36 0 0 chr15 1688693 1688721 -84007033 + AT_rich Low_complexity Low_complexity 1 28 0 1696 143 0 104 chr15 1689626 1689961 -84005793 + AluSx SINE Alu 2 301 -11 566 157 0 0 chr15 1691610 1691699 -84004055 - AluJ/FLAM SINE Alu -222 90 2 622 132 0 0 chr15 1691924 1692015 -84003739 - FLAM_C SINE Alu -20 123 33 1055 39 0 0 chr15 1692015 1692143 -84003611 + L1PA4 LINE L1 6027 6154 -1 1406 180 32 18 chr15 1692479 1692757 -84002997 - AluJo SINE Alu -30 282 1 2094 109 7 14 chr15 1693047 1693331 -84002423 - AluJb SINE Alu -7 305 24 2336 110 0 0 chr15 1693628 1693928 -84001826 - AluSx SINE Alu -12 300 1 264 214 36 12 chr15 1694622 1694706 -84001048 + (TCTCTG)n Simple_repeat Simple_repeat 5 90 0 723 189 0 8 chr15 1695241 1695373 -84000381 + FLAM_C SINE Alu 1 131 -2 2398 85 0 19 chr15 1695431 1695748 -84000006 + AluY SINE Alu 1 311 0 2058 113 28 3 chr15 1695970 1696261 -83999493 + AluSx SINE Alu 1 298 -14 23 0 0 0 chr15 1696540 1696563 -83999191 + AT_rich Low_complexity Low_complexity 1 23 0 216 319 132 0 chr15 1696603 1696694 -83999060 - L2 LINE L2 -2 3270 3168 2270 102 16 0 chr15 1696879 1697182 -83998572 + AluY SINE Alu 1 308 -3 2350 102 0 0 chr15 1697659 1697963 -83997791 + AluSx SINE Alu 1 304 -8 570 173 7 13 chr15 1698134 1698284 -83997470 + (TGGA)n Simple_repeat Simple_repeat 4 152 0 1079 205 157 40 chr15 1698456 1698831 -83996923 - MLT1C LTR MaLR -43 424 6 303 187 99 22 chr15 1699006 1699097 -83996657 - MIR SINE MIR -61 147 50 1866 163 10 0 chr15 1699221 1699510 -83996244 - AluJb SINE Alu -20 292 1 608 158 0 0 chr15 1699930 1700025 -83995729 - FLAM_A SINE Alu -32 110 16 406 236 57 0 chr15 1700658 1700781 -83994973 - MIR SINE MIR -108 154 25 181 79 0 53 chr15 1701237 1701275 -83994479 + (CCG)n Simple_repeat Simple_repeat 2 37 0 205 180 39 62 chr15 1701645 1701773 -83993981 + (CCCG)n Simple_repeat Simple_repeat 2 126 0 * 299 224 7 48 chr15 1701688 1701835 -83993919 + C-rich Low_complexity Low_complexity 3 143 0 24 0 0 0 chr15 1701835 1701859 -83993895 + GC_rich Low_complexity Low_complexity 1 24 0 243 297 11 22 chr15 1703181 1703272 -83992482 + (TG)n Simple_repeat Simple_repeat 1 90 0 275 236 114 24 chr15 1704380 1704503 -83991251 + MIR SINE MIR 72 205 -57 1872 159 0 3 chr15 1705140 1705429 -83990325 + AluJo SINE Alu 1 288 -24 21 0 0 0 chr15 1705429 1705450 -83990304 + AT_rich Low_complexity Low_complexity 1 21 0 1562 236 63 5 chr15 1705856 1706283 -83989471 - L1MB7 LINE L1 0 6184 5733 195 42 0 0 chr15 1707287 1707311 -83988443 + (TTTTTA)n Simple_repeat Simple_repeat 2 25 0 1474 226 58 0 chr15 1707381 1707709 -83988045 - MER7A DNA MER2_type -1 345 1 240 35 0 0 chr15 1708349 1708378 -83987376 + (T)n Simple_repeat Simple_repeat 1 29 0 332 257 203 51 chr15 1710103 1710418 -83985336 - L1MB7 LINE L1 -2145 5663 5301 2208 102 0 49 chr15 1710419 1710743 -83985011 - AluSx SINE Alu -4 308 1 2686 86 25 171 chr15 1711177 1711737 -83984017 - THE1C-int LTR MaLR -1102 478 1 1751 116 99 63 chr15 1711737 1711785 -83983969 - THE1C LTR MaLR 0 375 330 2273 95 3 0 chr15 1711785 1712119 -83983635 - AluY SINE Alu 0 335 1 2374 87 3 3 chr15 1712120 1712420 -83983334 - AluY SINE Alu -11 300 1 1751 116 99 63 chr15 1712420 1712730 -83983024 - THE1C LTR MaLR -44 331 1 843 180 0 62 chr15 1712730 1712748 -83983006 - AluJo SINE Alu -161 151 133 2354 90 0 3 chr15 1712748 1713048 -83982706 - AluY SINE Alu -12 299 1 2061 143 0 3 chr15 1713048 1713348 -83982406 - AluSx SINE Alu -12 300 1 843 180 0 62 chr15 1713348 1713489 -83982265 - AluJo SINE Alu -177 135 1 662 139 35 9 chr15 1713489 1713604 -83982150 - MLT1D LTR MaLR -387 118 1 242 276 198 0 chr15 1713690 1713805 -83981949 + Charlie7 DNA MER1_type 29 166 -2446 304 275 24 0 chr15 1713805 1713925 -83981829 - LTR50 LTR ERVL 0 795 402 956 271 85 48 chr15 1714001 1714056 -83981698 + Charlie7 DNA MER1_type 220 271 -2341 1811 171 0 10 chr15 1714056 1714360 -83981394 - AluJo SINE Alu -8 304 4 956 271 85 48 chr15 1714360 1714788 -83980966 + Charlie7 DNA MER1_type 271 721 -1891 412 261 5 72 chr15 1714787 1714837 -83980917 + Charlie7 DNA MER1_type 2420 2472 -140 * 2196 114 7 0 chr15 1714837 1715127 -83980627 + AluSx SINE Alu 1 292 -20 412 261 5 72 chr15 1715127 1715283 -83980471 + Charlie7 DNA MER1_type 2472 2612 0 2204 121 3 0 chr15 1715327 1715625 -83980129 + AluSq SINE Alu 1 299 -14 183 321 0 18 chr15 1715835 1715891 -83979863 - L2 LINE L2 -209 3063 3009 315 190 0 0 chr15 1715904 1715962 -83979792 - THE1A LTR MaLR -76 279 222 240 250 0 0 chr15 1715993 1716037 -83979717 + AluJ/monomer SINE Alu 1 44 -259 272 151 31 0 chr15 1716156 1716220 -83979534 + MIR SINE MIR 75 146 -62 320 294 0 12 chr15 1716970 1717055 -83978699 + MIR SINE MIR 5 88 -174 251 288 129 23 chr15 1717230 1717362 -83978392 - L1ME4a LINE L1 -38 6083 5938 411 252 64 9 chr15 1719625 1719752 -83976002 + MIR SINE MIR 34 173 -62 275 190 17 17 chr15 1720197 1720255 -83975499 - MLT1K LTR MaLR -8 580 523 28 29 0 0 chr15 1720260 1720295 -83975459 + AT_rich Low_complexity Low_complexity 1 35 0 2218 83 0 3 chr15 1720301 1720590 -83975164 - AluSq SINE Alu -25 288 1 485 200 147 74 chr15 1720591 1720781 -83974973 - MLT1K LTR MaLR -58 530 327 435 234 8 62 chr15 1720840 1720968 -83974786 + MLT1G LTR MaLR 93 213 -377 396 193 125 0 chr15 1720972 1721060 -83974694 + MLT1G LTR MaLR 471 569 -21 980 170 0 6 chr15 1721486 1721657 -83974097 + AluJb SINE Alu 121 290 -22 1905 155 0 13 chr15 1721660 1721976 -83973778 + AluSx SINE Alu 1 312 0 851 232 171 20 chr15 1722213 1722536 -83973218 - MLT1J LTR MaLR 0 493 139 2376 190 17 85 chr15 1722542 1723057 -83972697 - MER41D LTR ERV1 -22 535 61 2127 109 0 28 chr15 1723057 1723378 -83972376 - AluSq SINE Alu -1 312 1 2376 190 17 85 chr15 1723378 1723436 -83972318 - MER41D LTR ERV1 -496 61 1 500 259 30 15 chr15 1723436 1723571 -83972183 - MLT1J LTR MaLR -371 140 4 2011 90 54 0 chr15 1723651 1723930 -83971824 + AluY SINE Alu 1 294 -17 353 266 146 70 chr15 1723930 1724057 -83971697 + MIR SINE MIR 22 138 -124 1486 189 34 0 chr15 1724057 1724354 -83971400 - AluJo SINE Alu -5 307 1 373 221 110 31 chr15 1724355 1724518 -83971236 + MER104 DNA MER2_type 2 177 -3 353 266 146 70 chr15 1724518 1724587 -83971167 + MIR SINE MIR 137 235 -27 772 84 6 39 chr15 1724897 1725075 -83970679 + (TTAGGG)n Simple_repeat Simple_repeat 5 176 0 518 152 5 33 chr15 1725136 1725320 -83970434 + (TTAGGG)n Simple_repeat Simple_repeat 2 180 0 402 147 0 37 chr15 1725364 1725473 -83970281 + (TTAGGG)n Simple_repeat Simple_repeat 4 108 0 914 258 119 12 chr15 1725504 1725923 -83969831 - MLT1C LTR MaLR -3 464 1 1758 154 0 14 chr15 1726690 1726975 -83968779 - AluJo SINE Alu -21 291 11 1720 252 89 19 chr15 1726994 1727557 -83968197 - MER20B DNA MER1_type -34 749 148 688 268 10 20 chr15 1727923 1728121 -83967633 + MIR SINE MIR 17 212 -50 2126 113 7 0 chr15 1728128 1728429 -83967325 - AluSp SINE Alu -10 303 1 1607 233 37 17 chr15 1728573 1729019 -83966735 - L1MB5 LINE L1 -58 6116 5665 203 276 181 9 chr15 1729082 1729187 -83966567 + MIR SINE MIR 31 153 -109 818 242 14 28 chr15 1729352 1729563 -83966191 - MER63A DNA MER1_type 0 210 3 285 286 164 21 chr15 1729797 1729937 -83965817 + MLT1L LTR MaLR 226 385 -230 1964 107 0 0 chr15 1730441 1730704 -83965050 + AluSc SINE Alu 16 278 -31 183 80 0 0 chr15 1730707 1730732 -83965022 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 1038 126 16 33 chr15 1732170 1732352 -83963402 + AluJo SINE Alu 39 217 -95 266 152 0 0 chr15 1732353 1732404 -83963350 + AluJb SINE Alu 84 125 -177 1308 167 0 67 chr15 1732431 1732730 -83963024 + AluJo SINE Alu 7 285 -27 1946 117 0 0 chr15 1732754 1733028 -83962726 + AluSx SINE Alu 1 274 -38 306 0 0 0 chr15 1733447 1733481 -83962273 + (TG)n Simple_repeat Simple_repeat 2 35 0 213 94 0 0 chr15 1733564 1733596 -83962158 + (TG)n Simple_repeat Simple_repeat 2 33 0 315 0 0 0 chr15 1733681 1733716 -83962038 + (TG)n Simple_repeat Simple_repeat 1 35 0 198 71 0 0 chr15 1733895 1733923 -83961831 + (TG)n Simple_repeat Simple_repeat 2 29 0 369 0 0 0 chr15 1734012 1734053 -83961701 + (TG)n Simple_repeat Simple_repeat 1 41 0 198 71 0 0 chr15 1734232 1734260 -83961494 + (TG)n Simple_repeat Simple_repeat 2 29 0 707 153 0 8 chr15 1734683 1734807 -83960947 + AluJo/FLAM SINE Alu 2 124 -188 2122 107 3 0 chr15 1734807 1735106 -83960648 - AluSx SINE Alu -12 300 1 1055 127 0 13 chr15 1735322 1735479 -83960275 - PABL_B LTR ERV1 0 667 513 231 175 62 0 chr15 1735609 1735664 -83960090 - Alu SINE Alu -253 50 1 1335 172 47 0 chr15 1735701 1735957 -83959797 + AluJo SINE Alu 30 297 -15 2017 132 0 0 chr15 1736233 1736537 -83959217 - AluSx SINE Alu -8 304 1 2171 103 0 10 chr15 1736749 1737059 -83958695 - AluSx SINE Alu -5 307 1 1815 137 0 0 chr15 1737216 1737500 -83958254 - AluSx SINE Alu -11 301 18 231 319 17 17 chr15 1737967 1738083 -83957671 + C-rich Low_complexity Low_complexity 4 119 0 5472 84 5 5 chr15 1738184 1738919 -83956835 + L1PA10 LINE L1 5425 6159 -9 1795 239 86 23 chr15 1739224 1739700 -83956054 - MER77 LTR ERV1 -36 569 64 236 184 224 31 chr15 1740556 1740654 -83955100 + MER103 DNA DNA 7 123 -43 486 300 33 42 chr15 1740786 1741026 -83954728 + MIR SINE MIR 13 250 -12 786 180 0 0 chr15 1741026 1741204 -83954550 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 1956 137 0 0 chr15 1741827 1742126 -83953628 + AluSq SINE Alu 1 299 -14 198 287 0 0 chr15 1742631 1742718 -83953036 + G-rich Low_complexity Low_complexity 1 87 0 8725 119 16 2 chr15 1742824 1744621 -83951133 - L1P4 LINE L1 -350 5818 4002 283 291 73 24 chr15 1745005 1745156 -83950598 + MIR3 SINE MIR 4 159 -69 275 254 0 0 chr15 1745213 1745268 -83950486 - L2 LINE L2 -8 3264 3210 294 301 44 18 chr15 1745338 1745451 -83950303 + L1MC5 LINE L1 7798 7913 -48 1579 173 16 36 chr15 1745462 1745769 -83949985 - AluJo SINE Alu -11 301 1 334 291 82 6 chr15 1745772 1745930 -83949824 - MIR SINE MIR -59 203 34 447 19 0 0 chr15 1746443 1746495 -83949259 + (TG)n Simple_repeat Simple_repeat 2 53 0 267 203 0 0 chr15 1747533 1747592 -83948162 + (TG)n Simple_repeat Simple_repeat 1 59 0 291 333 51 7 chr15 1747679 1747817 -83947937 + L3 LINE CR1 235 378 -1199 389 259 105 49 chr15 1747872 1748119 -83947635 - L1MC4a LINE L1 -1642 6166 5906 185 266 125 0 chr15 1748130 1748194 -83947560 + L3 LINE CR1 439 510 -1067 225 140 0 123 chr15 1748511 1748568 -83947186 + L2 LINE L2 3262 3311 -2 483 298 160 0 chr15 1749644 1749832 -83945922 + MIR SINE MIR 42 259 -3 238 243 186 0 chr15 1749947 1750017 -83945737 + L2 LINE L2 3190 3272 -41 222 118 0 0 chr15 1750034 1750068 -83945686 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 1277 218 19 16 chr15 1752634 1752951 -83942803 + MER65A LTR ERV1 1 318 -127 1038 294 59 54 chr15 1752952 1753596 -83942158 - MER89-int LTR ERV1 -1669 5132 4486 687 229 127 0 chr15 1754219 1754376 -83941378 - MER89-int LTR ERV1 -1594 5207 5031 256 313 88 33 chr15 1755494 1755734 -83940020 + L1MCb LINE L1 571 823 -5222 2317 71 0 3 chr15 1755837 1756134 -83939620 + AluY SINE Alu 1 296 -15 7029 37 6 0 chr15 1756192 1757024 -83938730 + L1PA5 LINE L1 5317 6153 -1 515 300 88 35 chr15 1759410 1759840 -83935914 - L1MC4a LINE L1 -612 5732 5280 259 247 43 0 chr15 1759850 1759943 -83935811 - L1MC4a LINE L1 -853 5293 5197 1144 299 39 29 chr15 1760096 1760717 -83935037 - L1MC3 LINE L1 -621 7164 6538 281 231 11 22 chr15 1760789 1760817 -83934937 + (TAGA)n Simple_repeat Simple_repeat 4 31 -62 186 43 0 0 chr15 1760817 1760840 -83934914 + (CATA)n Simple_repeat Simple_repeat 3 25 0 281 231 11 22 chr15 1760840 1760902 -83934852 + (TAGA)n Simple_repeat Simple_repeat 31 93 0 621 283 52 13 chr15 1761130 1761360 -83934394 - MER89-int LTR ERV1 -3076 3725 3487 1957 203 5 3 chr15 1761689 1762063 -83933691 - L1PA16 LINE L1 -290 5876 5502 409 214 0 0 chr15 1762062 1762146 -83933608 - L1P4 LINE L1 -581 5585 5502 * 509 146 0 0 chr15 1762145 1762227 -83933527 - L1P4 LINE L1 -581 5585 5504 2418 219 23 23 chr15 1762227 1763255 -83932499 - L1P4 LINE L1 -580 5586 4562 4620 254 40 19 chr15 1763261 1764774 -83930980 + L1P4 LINE L1 3001 4544 -1602 765 279 50 47 chr15 1764820 1765200 -83930554 - MER89-int LTR ERV1 -2111 4690 4310 675 317 28 41 chr15 1765198 1765561 -83930193 - MER89-int LTR ERV1 -2647 4154 3797 * 446 299 46 10 chr15 1765607 1765801 -83929953 - MER89-int LTR ERV1 -3095 3706 3506 368 136 0 0 chr15 1766387 1766446 -83929308 + Alu SINE Alu 242 300 -2 1749 155 0 0 chr15 1767971 1768248 -83927506 + AluSx SINE Alu 11 287 -25 1136 228 36 69 chr15 1769521 1769912 -83925842 + MLT1B LTR MaLR 2 379 -11 220 308 104 57 chr15 1770875 1771210 -83924544 - L2 LINE L2 -1648 1666 1316 381 250 37 63 chr15 1771283 1771456 -83924298 - L1M4c LINE L1 -4258 2475 1928 1475 230 22 0 chr15 1771457 1771774 -83923980 + MER7A DNA MER2_type 2 323 -23 1918 126 3 20 chr15 1771779 1772081 -83923673 - AluSx SINE Alu -15 297 1 524 318 30 35 chr15 1772131 1772499 -83923255 - L1M4c LINE L1 -4874 1779 1414 274 340 0 0 chr15 1772790 1772896 -83922858 + L1MCb LINE L1 726 831 -5214 404 152 0 29 chr15 1774341 1774446 -83921308 + (TG)n Simple_repeat Simple_repeat 2 103 0 593 269 73 53 chr15 1776188 1776732 -83919022 - L1MC/D LINE L1 -771 5375 5170 23 33 0 0 chr15 1776757 1776787 -83918967 + AT_rich Low_complexity Low_complexity 1 30 0 2077 278 92 14 chr15 1776898 1777769 -83917985 - L1MC3 LINE L1 -657 7128 6190 320 288 75 27 chr15 1777735 1778030 -83917724 + L1MC3 LINE L1 5904 6212 -1573 * 26 0 0 0 chr15 1778133 1778159 -83917595 + AT_rich Low_complexity Low_complexity 1 26 0 1755 102 102 0 chr15 1782140 1782406 -83913348 + AluSp SINE Alu 1 293 -20 22 35 0 0 chr15 1782498 1782527 -83913227 + AT_rich Low_complexity Low_complexity 1 29 0 264 30 0 0 chr15 1782599 1782632 -83913122 + (TG)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr15 1782644 1782666 -83913088 + AT_rich Low_complexity Low_complexity 1 22 0 384 284 70 0 chr15 1783198 1783399 -83912355 - L1MD3 LINE L1 -11 7984 7770 308 276 86 0 chr15 1783718 1783870 -83911884 - L1MCa LINE L1 -3711 2715 2551 574 318 75 38 chr15 1783959 1784540 -83911214 - L1MCa LINE L1 -4236 2371 1680 309 228 30 30 chr15 1785612 1785713 -83910041 + L1ME LINE L1 5698 5798 -368 1229 286 101 14 chr15 1785782 1786417 -83909337 + L1PA13 LINE L1 529 1258 -5529 2364 168 21 9 chr15 1786420 1786844 -83908910 + L1PA13 LINE L1 1396 1824 -4963 * 2890 210 34 16 chr15 1786836 1787574 -83908180 + L1MA7 LINE L1 5541 6291 0 473 305 66 5 chr15 1787585 1787798 -83907956 + L1M4 LINE L1 5172 5397 -749 456 72 24 24 chr15 1787924 1788007 -83907747 + (GAAA)n Simple_repeat Simple_repeat 4 86 0 222 37 0 0 chr15 1788009 1788036 -83907718 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 508 311 0 0 chr15 1788460 1788595 -83907159 + MER70B LTR ERVL 90 224 -354 327 271 211 12 chr15 1788633 1788880 -83906874 - L1MCa LINE L1 -4206 2220 1925 * 1471 164 21 0 chr15 1788872 1789159 -83906595 - L1 LINE L1 -1404 4742 4450 366 174 0 54 chr15 1789172 1789264 -83906490 + L1MA2 LINE L1 6218 6304 0 589 292 65 26 chr15 1789327 1789808 -83905946 + L1MC3 LINE L1 5254 6040 -160 672 305 38 0 chr15 1789946 1790159 -83905595 - HERVL74 LTR ERVL -3785 1900 1680 1924 130 0 17 chr15 1790745 1791038 -83904716 + AluSx SINE Alu 5 292 -20 301 232 0 0 chr15 1791041 1791097 -83904657 + L1MC4 LINE L1 6648 6703 -1339 1531 109 23 9 chr15 1791290 1791510 -83904244 + PABL_B LTR ERV1 445 667 0 2073 103 3 7 chr15 1791726 1792027 -83903727 + AluSx SINE Alu 1 300 -12 687 161 0 8 chr15 1792027 1792151 -83903603 - AluJo/FLAM SINE Alu -188 124 2 198 71 0 0 chr15 1792574 1792602 -83903152 + (CA)n Simple_repeat Simple_repeat 2 29 0 291 28 0 0 chr15 1792781 1792817 -83902937 + (CA)n Simple_repeat Simple_repeat 1 36 0 213 94 0 0 chr15 1792904 1792936 -83902818 + (CA)n Simple_repeat Simple_repeat 2 33 0 288 0 0 0 chr15 1793019 1793051 -83902703 + (CA)n Simple_repeat Simple_repeat 2 33 0 1946 117 0 0 chr15 1793470 1793744 -83902010 - AluSx SINE Alu -38 274 1 551 329 83 28 chr15 1793849 1794284 -83901470 + L1MCb LINE L1 114 572 -5473 2094 128 0 0 chr15 1796417 1796729 -83899025 - AluSx SINE Alu 0 312 1 461 291 41 67 chr15 1796799 1796874 -83898880 - L1MC/D LINE L1 -2069 5716 5641 2043 91 0 4 chr15 1796874 1797178 -83898576 + AluSg1 SINE Alu 6 308 0 461 291 41 67 chr15 1797178 1797445 -83898309 - L1MC/D LINE L1 -2144 5641 5382 1900 244 65 2 chr15 1797476 1797906 -83897848 + LTR32 LTR ERVL 15 471 0 945 299 19 23 chr15 1797924 1798458 -83897296 + HERVL32 LTR ERVL 19 590 -2828 1760 253 20 44 chr15 1798467 1799024 -83896730 + HERVL32 LTR ERVL 2309 2856 -562 1171 253 37 53 chr15 1799144 1799826 -83895928 + HERVL32 LTR ERVL 612 1326 -2092 * 3222 239 65 63 chr15 1799819 1800871 -83894883 + HERVL32 LTR ERVL 1627 2680 -738 1518 216 24 32 chr15 1800897 1801277 -83894477 + MLT1B LTR MaLR 14 390 0 1244 314 55 43 chr15 1802918 1803678 -83892076 + MER89-int LTR ERV1 3526 4294 -2507 1799 178 41 25 chr15 1804489 1804883 -83890871 - L1MA7 LINE L1 -25 6266 5867 644 49 0 0 chr15 1804889 1804970 -83890784 + L1M3 LINE L1 5389 5469 -865 1709 218 39 13 chr15 1804972 1805357 -83890397 - MSTD LTR MaLR -1 395 1 2226 244 150 55 chr15 1805372 1805723 -83890031 - MSTD-int LTR MaLR -17 1718 1402 5089 38 10 3 chr15 1805723 1806337 -83889417 + L1PA3 LINE L1 5538 6155 0 2226 244 150 55 chr15 1806337 1806787 -83888967 - MSTD-int LTR MaLR -333 1402 841 1601 260 30 2 chr15 1806848 1807279 -83888475 - MSTD-int LTR MaLR -1291 444 2 1439 209 38 62 chr15 1807281 1807654 -83888100 - MSTD LTR MaLR 0 396 33 1942 121 4 0 chr15 1811170 1811473 -83884281 - AluSx SINE Alu 0 304 1 624 255 1 10 chr15 1812198 1812380 -83883374 - L1MB1 LINE L1 0 6168 6008 2465 220 39 15 chr15 1812410 1813049 -83882705 - L1 LINE L1 -1888 4258 3601 1859 89 4 0 chr15 1813049 1813323 -83882431 + AluY SINE Alu 38 312 0 500 208 78 13 chr15 1813345 1813499 -83882255 - L1 LINE L1 -2645 3501 3338 359 280 59 51 chr15 1813804 1814040 -83881714 + L1MC5 LINE L1 7530 7767 -194 722 274 145 13 chr15 1814171 1814551 -83881203 + MLT1D LTR MaLR 1 430 -75 3999 258 68 25 chr15 1814561 1816881 -83878873 + HERVL74 LTR ERVL 1196 3652 -2033 527 236 51 67 chr15 1816885 1817063 -83878691 + HERVL74 LTR ERVL 3890 4064 -1621 1100 291 43 39 chr15 1817088 1817712 -83878042 + HERVL74 LTR ERVL 4611 5268 -417 613 268 24 24 chr15 1817730 1817935 -83877819 + HERVL74 LTR ERVL 5393 5597 -88 831 285 43 32 chr15 1817993 1818340 -83877414 + MER74B LTR ERVL 60 410 -212 1332 313 93 31 chr15 1819830 1820794 -83874960 - L1M4b LINE L1 -5814 1045 22 457 308 73 40 chr15 1820808 1821136 -83874618 - L1MCa LINE L1 -4761 1665 1327 11074 203 38 29 chr15 1821325 1824684 -83871070 - L1PA13 LINE L1 -3424 3373 1 2166 209 41 16 chr15 1824690 1825207 -83870547 + L1MC3 LINE L1 5580 6109 -1676 7366 202 41 8 chr15 1825230 1827863 -83867891 + L1MA9 LINE L1 3356 6081 -231 435 221 31 0 chr15 1827865 1827992 -83867762 + L1MA9 LINE L1 6180 6310 -2 1351 204 18 0 chr15 1828015 1828353 -83867401 + L1 LINE L1 4328 4671 -1475 904 290 87 8 chr15 1828353 1828732 -83867022 - L2 LINE L2 -1564 1750 1342 21 36 0 0 chr15 1828803 1828831 -83866923 + AT_rich Low_complexity Low_complexity 1 28 0 572 406 31 16 chr15 1829587 1830149 -83865605 + L2 LINE L2 2722 3292 -21 196 300 38 38 chr15 1832016 1832096 -83863658 - MIR3 SINE MIR -3 205 126 2234 74 3 14 chr15 1832743 1833070 -83862684 + AluY SINE Alu 1 324 0 254 73 24 0 chr15 1833201 1833242 -83862512 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 223 302 16 0 chr15 1833418 1833481 -83862273 + (CA)n Simple_repeat Simple_repeat 1 64 0 2132 181 26 16 chr15 1833632 1834062 -83861692 - Tigger2a DNA MER2_type 0 434 1 279 299 0 59 chr15 1834891 1835078 -83860676 + CT-rich Low_complexity Low_complexity 3 178 0 185 327 0 0 chr15 1835702 1835757 -83859997 + MIR3 SINE MIR 123 177 -31 254 287 36 28 chr15 1835833 1835973 -83859781 + MIR SINE MIR 60 197 -65 279 54 0 0 chr15 1837281 1837318 -83858436 + (TA)n Simple_repeat Simple_repeat 1 37 0 29255 105 8 20 chr15 1837451 1842919 -83852835 + L1PA7 LINE L1 1 5487 -982 258 56 0 0 chr15 1842919 1842955 -83852799 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 29255 105 8 20 chr15 1842955 1843905 -83851849 + L1PA7 LINE L1 5487 6446 -23 813 213 64 13 chr15 1843905 1844140 -83851614 + MER96B DNA MER1_type? 148 394 -23 33 80 0 0 chr15 1844380 1844455 -83851299 + AT_rich Low_complexity Low_complexity 1 75 0 222 370 0 0 chr15 1844598 1844698 -83851056 + GA-rich Low_complexity Low_complexity 3 102 0 2939 121 11 6 chr15 1844785 1845255 -83850499 + MER84 LTR ERVI 36 507 0 953 105 0 25 chr15 1845764 1845926 -83849828 + L1P4 LINE L1 5333 5490 -671 2558 47 0 19 chr15 1845926 1846243 -83849511 + AluY SINE Alu 1 311 0 1765 265 99 42 chr15 1846433 1847001 -83848753 - L1M4 LINE L1 -1822 4324 3790 2285 84 7 0 chr15 1847001 1847298 -83848456 + AluY SINE Alu 1 299 -12 1765 265 99 42 chr15 1847298 1847872 -83847882 - L1M4 LINE L1 -2356 3790 3117 * 3103 157 51 16 chr15 1847871 1848690 -83847064 - L1PA15 LINE L1 -324 5841 4984 752 41 0 10 chr15 1848690 1848787 -83846967 + L1PA4 LINE L1 6057 6152 -3 3103 157 51 16 chr15 1848787 1849102 -83846652 - L1PA15 LINE L1 -1181 4984 4681 10757 241 24 40 chr15 1849103 1853435 -83842319 - L1PA12 LINE L1 -816 6768 2554 5908 231 31 15 chr15 1853460 1855186 -83840568 + L1PA15 LINE L1 2143 3896 -2250 1594 196 43 0 chr15 1855175 1855547 -83840207 + L1PA15 LINE L1 4846 5233 -913 * 1095 99 13 0 chr15 1855549 1855700 -83840054 + AluSc SINE Alu 150 302 -7 2279 101 0 3 chr15 1855710 1856006 -83839748 + AluSq SINE Alu 1 295 -18 4841 127 6 10 chr15 1856007 1856818 -83838936 + L1PA15 LINE L1 5357 6164 -1 1214 273 11 5 chr15 1856865 1857232 -83838522 - L1PA12 LINE L1 -5025 2556 2188 777 286 107 56 chr15 1857470 1859024 -83836730 - L1PA12 LINE L1 -5399 2182 22 204 140 40 20 chr15 1859245 1859295 -83836459 + T-rich Low_complexity Low_complexity 5 55 0 1658 220 80 78 chr15 1859971 1860608 -83835146 + LTR9B LTR ERV1 7 644 0 401 158 29 0 chr15 1860793 1860932 -83834822 + (TA)n Simple_repeat Simple_repeat 1 143 0 43 0 0 0 chr15 1860937 1860980 -83834774 + AT_rich Low_complexity Low_complexity 1 43 0 194 379 107 12 chr15 1861108 1861277 -83834477 + L2 LINE L2 2725 2909 -405 252 258 11 75 chr15 1861289 1861382 -83834372 + L2 LINE L2 3184 3270 -2 311 280 57 45 chr15 1862730 1862887 -83832867 + L1ME1 LINE L1 5998 6156 -10 1849 154 32 0 chr15 1863623 1863908 -83831846 + AluSx SINE Alu 1 294 -18 23 0 0 0 chr15 1864876 1864899 -83830855 + AT_rich Low_complexity Low_complexity 1 23 0 249 328 0 35 chr15 1864966 1865140 -83830614 + T-rich Low_complexity Low_complexity 2 169 0 39 22 0 0 chr15 1867309 1867355 -83828399 + AT_rich Low_complexity Low_complexity 1 46 0 729 307 137 30 chr15 1867914 1868638 -83827116 - L2 LINE L2 -34 3279 2474 28 79 0 0 chr15 1868708 1868771 -83826983 + AT_rich Low_complexity Low_complexity 1 63 0 1713 268 39 40 chr15 1868930 1869609 -83826145 - L1ME2 LINE L1 -16 6148 5465 1740 191 148 41 chr15 1869612 1870100 -83825654 + MER74A LTR ERVL 19 558 0 442 194 31 0 chr15 1870614 1870712 -83825042 - L1ME2 LINE L1 -744 5418 5318 548 244 39 17 chr15 1870754 1870984 -83824770 - L1ME2 LINE L1 -916 5230 4996 1819 164 13 0 chr15 1871096 1871401 -83824353 + AluSx SINE Alu 1 309 -3 3131 167 22 4 chr15 1871527 1872067 -83823687 + MER44D DNA MER2_type 1 605 0 385 226 11 11 chr15 1872067 1872152 -83823602 + L1MC4 LINE L1 6616 6703 -1339 180 0 0 0 chr15 1872152 1872172 -83823582 + (TG)n Simple_repeat Simple_repeat 2 21 0 26 82 0 0 chr15 1872529 1872590 -83823164 + AT_rich Low_complexity Low_complexity 1 61 0 706 203 120 52 chr15 1873082 1873274 -83822480 - MER20 DNA MER1_type -2 217 13 23 0 0 0 chr15 1877031 1877054 -83818700 + AT_rich Low_complexity Low_complexity 1 23 0 462 18 0 0 chr15 1878617 1878672 -83817082 + (CA)n Simple_repeat Simple_repeat 1 55 0 376 289 141 34 chr15 1878880 1879023 -83816731 - L2 LINE L2 0 3313 3187 223 27 27 27 chr15 1879023 1879060 -83816694 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 376 289 141 34 chr15 1879060 1879179 -83816575 - L2 LINE L2 -126 3187 3023 416 327 194 32 chr15 1879330 1879473 -83816281 - L2 LINE L2 0 3313 3195 223 27 27 27 chr15 1879473 1879510 -83816244 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 416 327 194 32 chr15 1879510 1879921 -83815833 - L2 LINE L2 -118 3195 2653 432 0 0 0 chr15 1879931 1879979 -83815775 + (TA)n Simple_repeat Simple_repeat 2 49 0 275 259 89 27 chr15 1880657 1880769 -83814985 + MIR3 SINE MIR 82 200 -8 270 242 17 39 chr15 1881178 1881356 -83814398 + (TTATA)n Simple_repeat Simple_repeat 2 175 0 298 90 51 13 chr15 1881358 1881436 -83814318 + (TA)n Simple_repeat Simple_repeat 2 82 0 1764 145 28 3 chr15 1881484 1881766 -83813988 - MER72 LTR ERV1 0 722 434 1685 191 3 7 chr15 1881768 1882067 -83813687 - MER72 LTR ERV1 -420 302 5 570 206 59 7 chr15 1882077 1882213 -83813541 + MIR SINE MIR 45 187 -75 307 318 100 0 chr15 1882472 1882582 -83813172 + L2 LINE L2 3152 3272 0 22447 28 0 0 chr15 1882930 1886409 -83809345 + L1PA2 LINE L1 2702 6180 0 2340 193 27 27 chr15 1887610 1888127 -83807627 + L1MA9 LINE L1 5267 5783 -385 671 336 47 26 chr15 1888127 1888555 -83807199 + L1MA9 LINE L1 1360 1796 -5700 969 268 113 95 chr15 1888654 1889644 -83806110 - MER52A LTR ERV1 0 1755 630 11847 218 67 27 chr15 1889706 1894375 -83801379 + L1MA9 LINE L1 2061 7021 -710 2411 128 8 31 chr15 1894375 1894759 -83800995 + THE1C LTR MaLR 1 375 0 11847 218 67 27 chr15 1894759 1895501 -83800253 + L1MA9 LINE L1 7021 7731 0 306 98 0 20 chr15 1895496 1895547 -83800207 + L1MA9 LINE L1 5771 5820 -348 * 2028 157 31 19 chr15 1895553 1895968 -83799786 + L1MA9 LINE L1 5892 6311 -1 425 217 33 0 chr15 1896481 1896573 -83799181 + U13 snRNA snRNA 1 95 -9 775 317 117 14 chr15 1896632 1897213 -83798541 - HAL1 LINE L1 -726 1781 1141 435 280 45 91 chr15 1897739 1897982 -83797772 - HAL1 LINE L1 -2185 322 91 204 216 39 0 chr15 1899238 1899289 -83796465 + A-rich Low_complexity Low_complexity 4 56 0 24 0 0 0 chr15 1900980 1901004 -83794750 + AT_rich Low_complexity Low_complexity 1 24 0 459 325 74 12 chr15 1901733 1901896 -83793858 + MIR SINE MIR 20 192 -70 439 263 109 6 chr15 1902112 1902268 -83793486 - MIR SINE MIR 0 262 91 960 144 0 0 chr15 1902434 1902580 -83793174 - AluSg/x SINE Alu -23 289 144 1074 269 13 8 chr15 1902769 1903007 -83792747 - MIR SINE MIR -22 240 2 734 275 68 13 chr15 1903737 1903973 -83791781 + MIR SINE MIR 13 261 -1 182 363 99 0 chr15 1905192 1905283 -83790471 - L2 LINE L2 0 3272 3173 232 318 47 54 chr15 1905382 1905511 -83790243 - MIR3 SINE MIR -31 177 50 215 61 30 0 chr15 1905903 1905936 -83789818 + (TC)n Simple_repeat Simple_repeat 1 34 0 404 200 27 36 chr15 1906563 1906673 -83789081 + L1MA8 LINE L1 6180 6288 -3 481 189 147 32 chr15 1906936 1907126 -83788628 + L1MC3 LINE L1 7574 7785 0 2389 144 100 4 chr15 1907214 1907664 -83788090 - L1PA16 LINE L1 -2 6164 5672 420 49 98 0 chr15 1907682 1907804 -83787950 + (TA)n Simple_repeat Simple_repeat 1 134 0 2051 204 13 7 chr15 1907842 1908531 -83787223 - L1PA16 LINE L1 -534 5632 4939 * 3016 215 12 19 chr15 1908530 1909301 -83786453 + L1 LINE L1 3061 3825 -2321 2075 113 21 0 chr15 1910223 1910514 -83785240 + AluSq SINE Alu 1 297 -16 1298 139 22 0 chr15 1911176 1911399 -83784355 + L1MA4 LINE L1 6070 6297 -3 2036 126 14 3 chr15 1911458 1911752 -83784002 + AluSx SINE Alu 1 297 -15 387 0 0 0 chr15 1912179 1912222 -83783532 + (TG)n Simple_repeat Simple_repeat 1 43 0 213 65 0 0 chr15 1914856 1914887 -83780867 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 303 351 54 30 chr15 1915150 1915318 -83780436 + MIR SINE MIR 19 190 -72 403 257 68 24 chr15 1918737 1918943 -83776811 - LTR37B LTR ERV1 0 468 254 457 92 77 0 chr15 1918943 1919008 -83776746 + L1PA13 LINE L1 6088 6157 -6 248 211 0 18 chr15 1919056 1919113 -83776641 - LTR37B LTR ERV1 -221 247 192 5046 140 19 8 chr15 1919265 1920063 -83775691 - L1MA2 LINE L1 0 6304 5498 3692 35 12 5 chr15 1920163 1920592 -83775162 + L1PA3 LINE L1 5723 6154 -1 1474 277 63 39 chr15 1920593 1921545 -83774209 + L1MA3 LINE L1 2265 3403 -4163 2762 247 38 23 chr15 1921686 1922557 -83773197 + L1P LINE L1 2790 3673 -2473 3642 203 60 5 chr15 1922560 1923431 -83772323 + L1MA3 LINE L1 4418 5336 -2229 * 6489 131 31 1 chr15 1923425 1924505 -83771249 + L1MA3 LINE L1 6614 7724 0 3940 190 51 29 chr15 1924499 1925153 -83770601 + L1 LINE L1 3026 3711 -2435 * 216 0 0 0 chr15 1925153 1925177 -83770577 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 3940 190 51 29 chr15 1925177 1925517 -83770237 + L1 LINE L1 3711 4042 -2104 1853 204 25 32 chr15 1925519 1925926 -83769828 + MSTB LTR MaLR 23 426 0 713 296 16 11 chr15 1926030 1926216 -83769538 + L2 LINE L2 2889 3075 -238 684 177 0 0 chr15 1926219 1926332 -83769422 + L1MA7 LINE L1 5997 6109 -182 1088 191 123 52 chr15 1926352 1926661 -83769093 + MER2 DNA MER2_type 12 342 -3 645 150 78 7 chr15 1926663 1926816 -83768938 + L1MA8 LINE L1 6107 6270 -21 371 275 69 61 chr15 1927102 1927349 -83768405 + L2 LINE L2 3065 3313 0 36 0 0 0 chr15 1927352 1927388 -83768366 + AT_rich Low_complexity Low_complexity 1 36 0 7816 162 25 4 chr15 1927749 1929185 -83766569 - L1 LINE L1 -883 5263 3798 2322 132 3 23 chr15 1929185 1929571 -83766183 + L1MA2 LINE L1 5926 6304 0 2181 113 0 28 chr15 1929592 1930099 -83765655 + AluSq SINE Alu 1 313 0 419 167 11 0 chr15 1930117 1930207 -83765547 + GA-rich Low_complexity Low_complexity 2 92 0 7779 179 43 18 chr15 1930215 1932109 -83763645 + L1M2 LINE L1 3663 5620 -680 186 216 0 0 chr15 1932120 1932157 -83763597 + L2 LINE L2 3277 3313 0 827 322 77 53 chr15 1936651 1937383 -83758371 + ERVL LTR ERVL 3603 4351 -1413 184 290 87 0 chr15 1937791 1937860 -83757894 + MER5A DNA MER1_type 2 76 -113 2926 277 21 39 chr15 1937861 1939410 -83756344 + L1M3b LINE L1 3 1287 -4994 19237 33 9 0 chr15 1939411 1942375 -83753379 + L1PA3 LINE L1 3178 6155 0 520 293 54 0 chr15 1942376 1942543 -83753211 - MST-int LTR MaLR -314 1337 1162 267 73 98 0 chr15 1946963 1947004 -83748750 + MLT2A2 LTR ERVL 399 443 -10 25 31 0 0 chr15 1947010 1947042 -83748712 + AT_rich Low_complexity Low_complexity 1 32 0 3116 80 15 2 chr15 1947042 1947443 -83748311 - MLT2A2 LTR ERVL -47 406 1 10675 89 12 1 chr15 1947443 1948826 -83746928 - HERVL-A2 LTR ERVL 0 5654 4258 6868 153 15 37 chr15 1948859 1950068 -83745686 - THE1C-int LTR MaLR -2 1578 427 2345 144 98 7 chr15 1950085 1950510 -83745244 - MER4E LTR ERV1 -129 650 217 728 119 8 0 chr15 1950511 1950629 -83745125 + (TTCC)n Simple_repeat Simple_repeat 2 120 0 2175 121 3 0 chr15 1950647 1950945 -83744809 - AluSp SINE Alu -14 299 1 1737 104 0 0 chr15 1950945 1951175 -83744579 - MER4E LTR ERV1 -549 230 1 1393 145 9 13 chr15 1951175 1951403 -83744351 - THE1C-int LTR MaLR -1353 227 1 1580 162 22 114 chr15 1951403 1951760 -83743994 - THE1C LTR MaLR 0 375 59 2714 17 0 0 chr15 1951760 1952057 -83743697 - AluYa5 SINE Alu -14 297 1 1580 162 22 114 chr15 1952057 1952112 -83743642 - THE1C LTR MaLR -316 59 1 42540 60 3 1 chr15 1952147 1958294 -83737460 + L1PA4 LINE L1 1 6155 0 5145 202 19 39 chr15 1958300 1960099 -83735655 - L1PA13 LINE L1 -3816 2981 1204 3583 231 46 25 chr15 1960105 1960954 -83734800 - L1PA13 LINE L1 -5920 867 1 529 197 42 42 chr15 1960964 1961106 -83734648 + LTR49-int LTR ERV1 4036 4177 -2154 493 276 70 30 chr15 1961123 1961322 -83734432 + MLT2F LTR ERVL 385 591 -72 660 125 21 0 chr15 1961337 1961433 -83734321 - AluJ/FLAM SINE Alu -213 99 2 560 271 0 0 chr15 1961450 1961579 -83734175 + FRAM SINE Alu 2 130 -46 1586 208 60 21 chr15 1962305 1962690 -83733064 - MLT1D LTR MaLR -105 400 1 550 226 8 0 chr15 1963482 1963606 -83732148 + L1MA8 LINE L1 6167 6291 0 2049 140 3 0 chr15 1964245 1964531 -83731223 + AluSx SINE Alu 1 287 -25 182 125 0 25 chr15 1964858 1964898 -83730856 + (GA)n Simple_repeat Simple_repeat 2 40 0 699 201 0 0 chr15 1965466 1965716 -83730038 + (TGGA)n Simple_repeat Simple_repeat 1 250 0 3990 136 14 22 chr15 1965744 1965797 -83729957 + MER50 LTR ERV1 83 135 -599 2098 129 0 0 chr15 1965797 1966108 -83729646 + AluSc SINE Alu 1 311 0 3990 136 14 22 chr15 1966108 1966693 -83729061 + MER50 LTR ERV1 135 717 -17 601 203 11 0 chr15 1966696 1966873 -83728881 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 180 0 0 0 chr15 1967627 1967647 -83728107 + (TG)n Simple_repeat Simple_repeat 2 21 0 925 233 107 47 chr15 1970717 1971146 -83724608 + MLT1D LTR MaLR 39 493 -12 327 164 0 0 chr15 1971298 1971359 -83724395 + CT-rich Low_complexity Low_complexity 1 61 0 378 314 14 90 chr15 1973871 1974094 -83721660 + MIR SINE MIR 53 258 -4 276 298 38 15 chr15 1974672 1974803 -83720951 + L1ME4a LINE L1 3418 3551 -2595 359 245 84 45 chr15 1975356 1975511 -83720243 + L1ME4a LINE L1 5231 5391 -755 354 347 112 16 chr15 1975497 1975748 -83720006 + L1ME4a LINE L1 5664 5938 -183 * 944 148 223 135 chr15 1976048 1976412 -83719342 - MSTD LTR MaLR 0 396 1 1768 238 82 14 chr15 1977308 1977892 -83717862 + MER67B LTR ERV1 32 655 -6 318 205 0 98 chr15 1982379 1982491 -83713263 + L1MEd LINE L1 968 1068 -5051 336 325 41 33 chr15 1982634 1982905 -83712849 + L1ME3A LINE L1 5684 5956 -214 225 163 116 0 chr15 1983145 1983188 -83712566 + L1P4 LINE L1 5699 5746 -420 260 176 0 66 chr15 1983702 1983884 -83711870 + (ACCTG)n Simple_repeat Simple_repeat 1 170 0 1344 222 50 7 chr15 1987232 1987534 -83708220 + MSTB LTR MaLR 100 414 -12 764 155 0 0 chr15 1987807 1987923 -83707831 - AluSg/x SINE Alu -21 291 176 277 259 52 26 chr15 1987933 1988049 -83707705 - HAL1b LINE L1 -539 809 691 341 238 156 19 chr15 1988108 1988268 -83707486 - L1ME3A LINE L1 -182 5988 5807 833 69 4 7 chr15 1988388 1988517 -83707237 + MER30B DNA MER1_type 4 109 -81 261 57 0 0 chr15 1988638 1988673 -83707081 + (TC)n Simple_repeat Simple_repeat 1 35 0 343 276 61 42 chr15 1988683 1988891 -83706863 + MLT1B LTR MaLR 181 370 -4 809 291 55 30 chr15 1989003 1989401 -83706353 + MLT1B-int LTR MaLR 264 671 -700 419 327 35 51 chr15 1989700 1989957 -83705797 + MLT1B-int LTR MaLR 1238 1490 -245 3930 219 37 9 chr15 1990657 1991954 -83703800 + L1PB4 LINE L1 4814 6152 -4 21 0 0 0 chr15 1991970 1991991 -83703763 + AT_rich Low_complexity Low_complexity 1 21 0 1973 121 7 10 chr15 1992023 1992303 -83703451 + AluSg SINE Alu 1 281 -29 234 81 0 0 chr15 1992303 1992340 -83703414 + (TATAA)n Simple_repeat Simple_repeat 2 38 0 1497 257 59 41 chr15 1992352 1993113 -83702641 + L1MD2 LINE L1 5117 5896 -463 1879 310 119 28 chr15 1993115 1994205 -83701549 - L1M4b LINE L1 -5650 1209 21 235 289 55 32 chr15 1994218 1994457 -83701297 - L1M1 LINE L1 -4708 1718 1422 664 240 89 27 chr15 1994832 1995057 -83700697 - LTR52-int LTR ERVL -3297 259 21 1033 250 47 47 chr15 1995108 1995488 -83700266 - LTR52 LTR ERVL -38 383 4 4127 202 52 5 chr15 1995849 1996722 -83699032 - MER49 LTR ERV1 -9 914 1 365 248 128 18 chr15 1996728 1996837 -83698917 - MER89-int LTR ERV1 -1653 5148 5028 24 0 0 0 chr15 1996837 1996861 -83698893 + AT_rich Low_complexity Low_complexity 1 24 0 485 266 146 31 chr15 1998649 1998875 -83696879 - MIR SINE MIR 0 262 11 343 343 86 6 chr15 1998926 1999101 -83696653 + MIR SINE MIR 74 262 0 324 265 183 27 chr15 1999131 1999306 -83696448 - MIR SINE MIR -40 222 30 3200 21 5 3 chr15 2000242 2000616 -83695138 - L1PA4 LINE L1 -5 6150 5776 4446 34 0 0 chr15 2000616 2001140 -83694614 + L1PA4 LINE L1 5275 5798 -357 418 287 28 101 chr15 2001465 2001712 -83694042 - MLT1J LTR MaLR -9 502 274 24 0 0 0 chr15 2002139 2002163 -83693591 + AT_rich Low_complexity Low_complexity 1 24 0 7683 24 7 0 chr15 2002221 2003475 -83692279 + L1PA3 LINE L1 4910 6169 0 22 0 0 0 chr15 2003479 2003501 -83692253 + AT_rich Low_complexity Low_complexity 1 22 0 260 262 99 55 chr15 2005986 2006163 -83689591 - MIR SINE MIR -67 195 16 399 250 167 21 chr15 2006334 2006622 -83689132 + L1ME4a LINE L1 5781 6110 -11 504 204 0 0 chr15 2006797 2006890 -83688864 + LTR55 LTR ERV 1 93 -455 754 257 33 0 chr15 2006917 2007131 -83688623 + LTR55 LTR ERV 235 455 -93 409 352 142 4 chr15 2007594 2007875 -83687879 - L3 LINE CR1 -159 1418 1099 578 188 87 0 chr15 2008957 2009106 -83686648 + Ricksha DNA DNA 9 170 -1084 * 2300 165 44 40 chr15 2009009 2009488 -83686266 - Ricksha DNA DNA -18 3228 2745 1152 167 33 12 chr15 2009488 2009728 -83686026 + L1MA5 LINE L1 6056 6300 0 2300 165 44 40 chr15 2009728 2009744 -83686010 - Ricksha DNA DNA -501 2745 2731 2556 120 69 5 chr15 2011148 2011556 -83684198 - MER57B LTR ERV1 0 434 1 180 274 119 36 chr15 2011733 2011817 -83683937 - L2 LINE L2 0 3272 3182 5525 56 0 9 chr15 2011863 2012556 -83683198 - L1PA7 LINE L1 -1 6153 5467 3266 85 7 12 chr15 2012556 2013108 -83682646 + L1PA7 LINE L1 4936 5483 -689 198 256 0 0 chr15 2013109 2013148 -83682606 - MER5A DNA MER1_type -138 51 13 227 361 45 69 chr15 2013416 2013793 -83681961 - L2 LINE L2 0 3313 2946 * 239 343 56 9 chr15 2013787 2013895 -83681859 - L2 LINE L2 -579 2735 2623 940 151 11 11 chr15 2013927 2014106 -83681648 - Looper DNA T2_type -1376 182 4 361 156 52 0 chr15 2014248 2014325 -83681429 + L1MB5 LINE L1 6028 6108 -66 1063 295 91 15 chr15 2014482 2014889 -83680865 + LTR16C LTR ERVL 37 474 -17 481 326 84 74 chr15 2014947 2015517 -83680237 - L2 LINE L2 -934 2380 1805 739 305 5 0 chr15 2015525 2015715 -83680039 + L2 LINE L2 2885 3075 -238 626 159 26 0 chr15 2015718 2015831 -83679923 + L1MA9 LINE L1 5993 6108 -204 1077 210 0 0 chr15 2015832 2016037 -83679717 + MER2 DNA MER2_type 1 205 -140 387 211 40 0 chr15 2016067 2016143 -83679611 + MER2 DNA MER2_type 264 342 -3 984 123 67 20 chr15 2016147 2016342 -83679412 + L1MA9 LINE L1 6109 6312 0 328 313 78 39 chr15 2016353 2016583 -83679171 + L2 LINE L2 3075 3313 0 30 0 0 0 chr15 2016584 2016614 -83679140 + AT_rich Low_complexity Low_complexity 1 30 0 202 73 49 0 chr15 2017946 2017987 -83677767 + (TA)n Simple_repeat Simple_repeat 1 43 0 1502 159 3 73 chr15 2018944 2019258 -83676496 - AluJb SINE Alu -20 292 1 254 342 13 0 chr15 2019476 2019555 -83676199 + MER5A DNA MER1_type 110 189 0 1140 270 37 12 chr15 2019779 2020317 -83675437 + L1M3c LINE L1 2155 2977 -4519 715 235 123 58 chr15 2020318 2021007 -83674747 + L1M3c LINE L1 2843 3576 -3989 1032 219 0 0 chr15 2021008 2021218 -83674536 + MER2 DNA MER2_type 1 210 -135 4484 243 49 28 chr15 2021325 2023067 -83672687 + L1M3c LINE L1 3566 5344 -2221 2204 130 0 0 chr15 2023068 2023375 -83672379 + AluSc SINE Alu 1 307 -2 7902 185 24 7 chr15 2023379 2024906 -83670848 + L1M1 LINE L1 10 1561 -6004 403 337 96 11 chr15 2025582 2025760 -83669994 + MIR3 SINE MIR 2 194 -14 3224 34 0 3 chr15 2028376 2028762 -83666992 + L1PA5 LINE L1 5763 6147 -7 33 0 0 0 chr15 2028765 2028798 -83666956 + AT_rich Low_complexity Low_complexity 1 33 0 1576 165 28 31 chr15 2029033 2029385 -83666369 - L1MA7 LINE L1 0 6291 5941 2390 184 13 4 chr15 2029386 2029849 -83665905 + L1MA7 LINE L1 5436 5902 -389 359 293 88 61 chr15 2030048 2030333 -83665421 - LTR67 LTR ERVL -4 553 250 2242 81 10 10 chr15 2030333 2030640 -83665114 - AluY SINE Alu -4 307 1 359 293 88 61 chr15 2030640 2030795 -83664959 - LTR67 LTR ERVL -307 250 101 405 0 0 0 chr15 2030888 2030933 -83664821 + (CA)n Simple_repeat Simple_repeat 2 46 0 1020 167 44 4 chr15 2032187 2032414 -83663340 + MER33 DNA MER1_type 1 236 -88 831 256 90 50 chr15 2032710 2033011 -83662743 + L2 LINE L2 2995 3307 -6 184 228 51 51 chr15 2033060 2033139 -83662615 - L2 LINE L2 -71 3242 3164 3436 43 11 0 chr15 2034769 2035208 -83660546 - L1PA4 LINE L1 -136 6019 5576 211 298 181 11 chr15 2036334 2036428 -83659326 - L2 LINE L2 -5 3308 3199 451 274 67 0 chr15 2039261 2039396 -83656358 + MLT1J1 LTR MaLR 28 171 -275 2189 122 7 3 chr15 2039560 2039864 -83655890 + AluSx SINE Alu 1 305 -7 461 295 32 26 chr15 2040785 2040975 -83654779 - MLT1I LTR MaLR -218 191 1 22 0 0 0 chr15 2041154 2041176 -83654578 + AT_rich Low_complexity Low_complexity 1 22 0 184 361 0 12 chr15 2041661 2041744 -83654010 - L2 LINE L2 -2 3311 3230 736 301 82 75 chr15 2041787 2042482 -83653272 - L2 LINE L2 -926 2388 1689 664 180 0 0 chr15 2042976 2043104 -83652650 - L1MA4 LINE L1 -10 6290 6163 462 287 54 49 chr15 2043111 2043423 -83652331 - L1MC4a LINE L1 -1879 5929 5613 2263 117 0 0 chr15 2043423 2043723 -83652031 - AluSx SINE Alu -12 300 1 462 287 54 49 chr15 2043723 2043779 -83651975 - L1MC4a LINE L1 -2195 5613 5559 882 97 28 0 chr15 2044490 2044635 -83651119 - L1MA6 LINE L1 0 6300 6152 2301 101 10 0 chr15 2044700 2044998 -83650756 - AluSg SINE Alu -9 301 1 288 53 0 0 chr15 2045717 2045755 -83649999 + (CA)n Simple_repeat Simple_repeat 1 38 0 204 215 0 114 chr15 2046165 2046244 -83649510 - MIR SINE MIR -97 165 96 253 339 170 27 chr15 2047186 2047516 -83648238 + L2 LINE L2 2463 2839 -475 556 321 27 0 chr15 2048207 2048391 -83647363 - MIR SINE MIR -6 256 68 204 211 0 0 chr15 2048528 2048566 -83647188 + (CA)n Simple_repeat Simple_repeat 1 38 0 10714 165 19 0 chr15 2048631 2050759 -83644995 + L1PA13 LINE L1 2006 4188 -2609 1368 129 57 0 chr15 2050741 2050989 -83644765 + L1PA13 LINE L1 4440 4701 -2096 * 677 150 136 7 chr15 2050999 2051139 -83644615 + Tigger1 DNA MER2_type 2259 2416 -2 373 310 32 39 chr15 2051554 2051709 -83644045 + MIR SINE MIR 1 154 -108 23 54 0 0 chr15 2051900 2051937 -83643817 + AT_rich Low_complexity Low_complexity 1 37 0 32 57 0 0 chr15 2052154 2052207 -83643547 + AT_rich Low_complexity Low_complexity 1 53 0 2893 166 11 23 chr15 2052825 2053182 -83642572 - Tigger3b DNA MER2_type -2463 565 216 2329 81 0 0 chr15 2053182 2053477 -83642277 - AluY SINE Alu -16 295 1 2893 166 11 23 chr15 2053477 2053691 -83642063 - Tigger3b DNA MER2_type -2812 216 1 371 262 75 73 chr15 2054796 2055466 -83640288 - HSREP522 Satellite telomeric 0 671 1 765 219 83 91 chr15 2055536 2056092 -83639662 - HSREP522 Satellite telomeric 0 551 1 2153 110 0 31 chr15 2057666 2057985 -83637769 - AluSg SINE Alu -1 309 1 1388 186 144 42 chr15 2058932 2059336 -83636418 + L1P LINE L1 3282 3726 -2420 2302 103 0 0 chr15 2059403 2059695 -83636059 + AluSc SINE Alu 1 292 -17 482 266 146 31 chr15 2065364 2065590 -83630164 - MIR SINE MIR 0 262 11 360 311 16 8 chr15 2065641 2065763 -83629991 + MIR SINE MIR 74 196 -66 309 265 183 27 chr15 2065846 2066021 -83629733 - MIR SINE MIR -40 222 30 189 0 0 0 chr15 2066770 2066791 -83628963 + (CAGAGA)n Simple_repeat Simple_repeat 4 24 0 3206 19 5 0 chr15 2066965 2067340 -83628414 - L1PA4 LINE L1 -3 6152 5776 4195 32 0 0 chr15 2067340 2067864 -83627890 + L1PA4 LINE L1 5275 5798 -357 363 257 41 76 chr15 2068189 2068360 -83627394 - MLT1J LTR MaLR -9 502 338 24 0 0 0 chr15 2068862 2068886 -83626868 + AT_rich Low_complexity Low_complexity 1 24 0 7083 25 6 0 chr15 2068944 2070163 -83625591 + L1PA3 LINE L1 4910 6135 -20 220 67 0 44 chr15 2070174 2070219 -83625535 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 238 271 99 55 chr15 2072701 2072878 -83622876 - MIR SINE MIR -67 195 16 317 225 79 22 chr15 2073047 2073225 -83622529 + L1ME4a LINE L1 5781 5968 -153 461 204 0 0 chr15 2073510 2073603 -83622151 + LTR55 LTR ERV 1 93 -455 671 252 33 0 chr15 2073630 2073844 -83621910 + LTR55 LTR ERV 235 455 -93 433 365 126 3 chr15 2074313 2074598 -83621156 - L3 LINE CR1 -159 1418 1099 2172 165 44 36 chr15 2075679 2076210 -83619544 - Ricksha DNA DNA -18 3233 2750 1104 167 33 12 chr15 2076210 2076450 -83619304 + L1MA5 LINE L1 6056 6300 0 2172 165 44 36 chr15 2076450 2076466 -83619288 - Ricksha DNA DNA -501 2750 2736 2481 123 69 5 chr15 2077877 2078285 -83617469 - MER57B LTR ERV1 0 434 1 5389 59 0 9 chr15 2078592 2079285 -83616469 - L1PA7 LINE L1 -1 6153 5467 3076 82 10 0 chr15 2079285 2079818 -83615936 + L1PA7 LINE L1 4936 5471 -701 326 190 17 0 chr15 2079818 2079876 -83615878 - MER5A DNA MER1_type -118 71 13 245 355 45 71 chr15 2080144 2080522 -83615232 - L2 LINE L2 0 3313 2946 237 343 56 9 chr15 2080516 2080624 -83615130 - L2 LINE L2 -579 2735 2623 * 886 151 11 11 chr15 2080656 2080835 -83614919 - Looper DNA T2_type -1376 182 4 320 156 52 0 chr15 2080977 2081054 -83614700 + L1MB5 LINE L1 6028 6108 -66 906 298 91 15 chr15 2081212 2081618 -83614136 + LTR16C LTR ERVL 38 474 -17 521 332 66 73 chr15 2081676 2082248 -83613506 - L2 LINE L2 -934 2380 1813 744 305 5 0 chr15 2082253 2082443 -83613311 + L2 LINE L2 2885 3075 -238 570 168 26 0 chr15 2082446 2082559 -83613195 + L1MA9 LINE L1 5993 6108 -204 971 219 0 0 chr15 2082560 2082765 -83612989 + MER2 DNA MER2_type 1 205 -140 374 222 14 0 chr15 2082799 2082871 -83612883 + MER2 DNA MER2_type 270 342 -3 961 118 67 20 chr15 2082875 2083070 -83612684 + L1MA9 LINE L1 6109 6312 0 288 317 78 39 chr15 2083081 2083311 -83612443 + L2 LINE L2 3075 3313 0 30 0 0 0 chr15 2083312 2083342 -83612412 + AT_rich Low_complexity Low_complexity 1 30 0 202 73 49 0 chr15 2084674 2084715 -83611039 + (TA)n Simple_repeat Simple_repeat 1 43 0 1628 159 3 73 chr15 2085672 2085986 -83609768 - AluJb SINE Alu -20 292 1 245 354 13 0 chr15 2086203 2086282 -83609472 + MER5A DNA MER1_type 110 189 0 1067 263 39 12 chr15 2086509 2087043 -83608711 + L1M3c LINE L1 2155 2977 -4519 586 246 114 55 chr15 2087044 2087720 -83608034 + L1M3c LINE L1 2843 3558 -4007 1057 214 0 0 chr15 2087734 2087944 -83607810 + MER2 DNA MER2_type 1 210 -135 4454 242 51 28 chr15 2088049 2089788 -83605966 + L1M3c LINE L1 3566 5344 -2221 2204 130 0 0 chr15 2089789 2090096 -83605658 + AluSc SINE Alu 1 307 -2 4683 188 32 9 chr15 2090100 2091022 -83604732 + L1M1 LINE L1 10 953 -6612 1199 252 55 102 chr15 2091156 2091405 -83604349 - L1 LINE L1 -3137 4428 4169 239 171 0 0 chr15 2091405 2091446 -83604308 + U2 snRNA snRNA 1 41 -147 1199 252 55 102 chr15 2091446 2091949 -83603805 - L1 LINE L1 -3396 4169 3673 1180 219 7 7 chr15 2091979 2092249 -83603505 + L1M3e LINE L1 7 276 -6754 422 261 120 42 chr15 2092234 2092297 -83603457 - L1 LINE L1 -4011 3554 3497 * 964 113 6 6 chr15 2092297 2092456 -83603298 + (TTCC)n Simple_repeat Simple_repeat 3 161 0 422 261 120 42 chr15 2092456 2092676 -83603078 - L1 LINE L1 -4068 3497 3249 1920 241 9 9 chr15 2092677 2093255 -83602499 - L1 LINE L1 -4475 3090 2513 1219 217 38 62 chr15 2095334 2095707 -83600047 + MSTD LTR MaLR 33 396 0 1407 273 28 2 chr15 2095710 2096142 -83599612 + MSTD-int LTR MaLR 2 444 -1291 * 1695 241 109 38 chr15 2096138 2096979 -83598775 + MSTD-int LTR MaLR 730 1719 -16 1465 208 46 14 chr15 2096993 2097339 -83598415 + MSTD LTR MaLR 1 357 -39 1018 122 0 0 chr15 2097343 2097491 -83598263 + AluY SINE Alu 146 293 -18 295 85 0 21 chr15 2097493 2097540 -83598214 + MSTD LTR MaLR 350 395 -1 469 106 0 47 chr15 2097542 2097627 -83598127 - L1M2 LINE L1 -822 5469 5389 1565 181 29 39 chr15 2097635 2098043 -83597711 + L1MA7 LINE L1 5867 6270 -21 1117 317 54 38 chr15 2098160 2098899 -83596855 - MER89-int LTR ERV1 -2540 4261 3511 1285 232 23 31 chr15 2100294 2100682 -83595072 - MLT1B LTR MaLR 0 390 6 435 305 21 21 chr15 2101077 2101267 -83594487 + L1MEc LINE L1 390 579 -5817 812 164 10 77 chr15 2101339 2101534 -83594220 - MER4A LTR ERV1 -110 554 373 240 99 380 14 chr15 2101589 2101660 -83594094 - MER4A LTR ERV1 -567 97 1 204 88 59 0 chr15 2103022 2103056 -83592698 + (CCTTG)n Simple_repeat Simple_repeat 4 39 0 1564 151 27 81 chr15 2103078 2103522 -83592232 + HSREP522 Satellite telomeric 3 422 -82 964 202 5 0 chr15 2103541 2103744 -83592010 - L1 LINE L1 -1998 4148 3945 619 175 8 42 chr15 2103775 2103895 -83591859 - FLAM_A SINE Alu -17 116 1 21 0 0 0 chr15 2103948 2103969 -83591785 + AT_rich Low_complexity Low_complexity 1 21 0 5687 138 15 17 chr15 2103969 2105058 -83590696 + L1MA5A LINE L1 5174 6264 -33 21 0 0 0 chr15 2105072 2105093 -83590661 + AT_rich Low_complexity Low_complexity 1 21 0 2476 144 51 90 chr15 2105803 2106426 -83589328 - L1MB2 LINE L1 -1 6170 5572 22 0 0 0 chr15 2106494 2106516 -83589238 + AT_rich Low_complexity Low_complexity 1 22 0 2407 73 0 22 chr15 2106651 2106965 -83588789 - AluY SINE Alu -4 307 1 276 30 0 0 chr15 2107240 2107273 -83588481 + (CA)n Simple_repeat Simple_repeat 2 34 0 241 240 0 0 chr15 2108674 2108724 -83587030 + MER3 DNA MER1_type 41 90 -119 * 740 173 123 17 chr15 2108692 2108871 -83586883 - MER3 DNA MER1_type -11 198 1 705 152 3 43 chr15 2109316 2109517 -83586237 - L1MB8 LINE L1 -2 6182 5989 807 188 0 6 chr15 2109537 2109702 -83586052 - L1MB8 LINE L1 -170 6008 5845 278 310 9 0 chr15 2110537 2110650 -83585104 + (TG)n Simple_repeat Simple_repeat 2 115 0 1639 151 14 92 chr15 2112361 2112732 -83583022 + MER2 DNA MER2_type 3 344 0 387 0 0 0 chr15 2113157 2113200 -83582554 + (CA)n Simple_repeat Simple_repeat 1 43 0 194 114 0 23 chr15 2113203 2113247 -83582507 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 247 204 0 19 chr15 2114220 2114274 -83581480 + L2 LINE L2 3217 3269 -3 600 314 64 13 chr15 2114859 2115095 -83580659 + L2 LINE L2 2729 2976 -338 842 149 32 0 chr15 2115100 2115254 -83580500 - L1MB1 LINE L1 -1 6167 6009 1959 120 11 0 chr15 2117011 2117277 -83578477 - AluSx SINE Alu -43 269 1 26 0 0 0 chr15 2120072 2120098 -83575656 + AT_rich Low_complexity Low_complexity 1 26 0 213 226 113 47 chr15 2120428 2120534 -83575220 + MIR SINE MIR 100 212 -50 340 310 129 19 chr15 2120749 2120904 -83574850 + MIR3 SINE MIR 13 184 -24 2283 123 0 0 chr15 2121741 2122051 -83573703 + AluSq SINE Alu 1 310 -3 278 26 26 0 chr15 2122806 2122845 -83572909 + (TA)n Simple_repeat Simple_repeat 1 40 0 22 56 0 0 chr15 2123690 2123726 -83572028 + AT_rich Low_complexity Low_complexity 1 36 0 792 159 15 0 chr15 2123726 2123858 -83571896 + AluJb SINE Alu 1 134 -178 1581 178 59 0 chr15 2123859 2124146 -83571608 + AluJo SINE Alu 1 304 -8 262 318 0 0 chr15 2124337 2124425 -83571329 + MIR SINE MIR 175 262 0 2360 83 0 7 chr15 2124506 2124807 -83570947 - AluY SINE Alu -12 299 1 286 260 57 24 chr15 2124844 2124967 -83570787 - L1ME4a LINE L1 -51 6070 5944 1969 119 3 31 chr15 2125134 2125420 -83570334 + AluSq SINE Alu 5 282 -31 180 0 0 0 chr15 2125421 2125441 -83570313 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 676 251 16 43 chr15 2125451 2125706 -83570048 + L1MEd LINE L1 1010 1257 -4862 884 122 0 7 chr15 2126717 2126856 -83568898 - AluSg/x SINE Alu -2 310 173 2720 157 38 4 chr15 2126856 2127352 -83568402 - L1MA4 LINE L1 -290 6010 5498 2148 129 0 3 chr15 2128621 2128931 -83566823 + AluSx SINE Alu 1 309 -3 1480 245 60 8 chr15 2129605 2129881 -83565873 - L1ME4a LINE L1 -465 5701 5441 2176 91 0 3 chr15 2129881 2130166 -83565588 - AluSx SINE Alu -24 288 5 1480 245 60 8 chr15 2130166 2130420 -83565334 - L1ME4a LINE L1 -725 5441 5143 2120 110 0 0 chr15 2130665 2130946 -83564808 + AluSg SINE Alu 7 287 -23 24 0 0 0 chr15 2130949 2130973 -83564781 + AT_rich Low_complexity Low_complexity 1 24 0 2193 95 3 0 chr15 2131185 2131491 -83564263 + AluSx SINE Alu 1 307 0 1952 139 0 29 chr15 2132026 2132342 -83563412 + AluSx SINE Alu 3 309 -3 2170 108 7 0 chr15 2133028 2133315 -83562439 + AluSx SINE Alu 1 289 -23 672 121 0 10 chr15 2133705 2133804 -83561950 - MER4A LTR ERV1 -566 98 1 1006 121 79 11 chr15 2133804 2133994 -83561760 + L1MA3 LINE L1 5705 5907 -398 * 2704 189 86 13 chr15 2133992 2134669 -83561085 - L1 LINE L1 -1446 4700 3975 * 6849 121 28 20 chr15 2134661 2136148 -83559606 - L1PA3 LINE L1 -2 6153 4678 2158 103 0 19 chr15 2136148 2136458 -83559296 - AluSx SINE Alu 0 312 9 6849 121 28 20 chr15 2136458 2136676 -83559078 - L1PA3 LINE L1 -1477 4678 3052 2048 127 6 9 chr15 2136676 2137008 -83558746 - L1PB2 LINE L1 0 7570 7240 3023 198 25 27 chr15 2137008 2137971 -83557783 - L1PB2 LINE L1 -622 6948 5996 3187 214 32 10 chr15 2137992 2138905 -83556849 - L1PB2 LINE L1 -3114 4451 3509 677 209 103 169 chr15 2138908 2139239 -83556515 - LTR28 LTR ERV1 -676 344 1 7704 225 42 8 chr15 2139240 2140864 -83554890 - L1M1 LINE L1 -5870 1695 17 382 185 2 7 chr15 2142463 2142547 -83553207 - L1MA4 LINE L1 -175 6129 6049 620 238 33 0 chr15 2142566 2142717 -83553037 + FRAM SINE Alu 1 156 -20 1573 215 3 0 chr15 2142719 2143021 -83552733 + AluJo SINE Alu 1 303 -9 273 194 16 23 chr15 2143143 2143229 -83552525 + L1MB5 LINE L1 5838 5932 -238 1793 138 25 14 chr15 2143268 2143550 -83552204 + AluSx SINE Alu 3 287 -25 2783 257 90 48 chr15 2143871 2146360 -83549394 - L1M4 LINE L1 -3591 3053 455 263 189 116 11 chr15 2146357 2146452 -83549302 - L1M4 LINE L1 -3081 3065 2961 * 1249 243 14 7 chr15 2146452 2146740 -83549014 - AluJb SINE Alu -22 290 1 334 203 40 124 chr15 2146831 2147033 -83548721 + MER53 DNA DNA 5 189 0 985 258 0 14 chr15 2147758 2147979 -83547775 - AluJo SINE Alu -82 230 13 365 304 5 77 chr15 2148414 2148608 -83547146 + MLT1E2 LTR MaLR 1 180 -446 23 54 0 0 chr15 2150520 2150557 -83545197 + AT_rich Low_complexity Low_complexity 1 37 0 32 26 0 0 chr15 2151346 2151385 -83544369 + AT_rich Low_complexity Low_complexity 1 39 0 3699 211 57 27 chr15 2152913 2154816 -83540938 - L1MA8 LINE L1 -3 6288 4326 5133 136 66 7 chr15 2154838 2155789 -83539965 - L1MA2 LINE L1 0 6304 5298 613 256 175 6 chr15 2156381 2156741 -83539013 + L1MB2 LINE L1 1071 1491 -4822 544 283 103 32 chr15 2156778 2157210 -83538544 + L1MB2 LINE L1 1363 2223 -4160 506 222 101 50 chr15 2157374 2157811 -83537943 + L1MB2 LINE L1 2137 2611 -3771 328 250 158 12 chr15 2158058 2158298 -83537456 + L1MB2 LINE L1 2837 3111 -3271 887 281 30 9 chr15 2158315 2158646 -83537108 + L1MB2 LINE L1 4757 5094 -1288 482 253 166 4 chr15 2158635 2158864 -83536890 + L1MB2 LINE L1 5909 6174 -233 * 2180 94 10 7 chr15 2158890 2159187 -83536567 + AluSx SINE Alu 1 298 -14 989 282 64 88 chr15 2160071 2160695 -83535059 + L1M3 LINE L1 2 610 -5345 3167 236 74 46 chr15 2160738 2161345 -83534409 + L1M3 LINE L1 3978 4566 -1490 2322 96 0 7 chr15 2161345 2161638 -83534116 - AluSg SINE Alu -16 294 4 3167 236 74 46 chr15 2161638 2162374 -83533380 + L1M3 LINE L1 4566 5367 -689 398 183 0 0 chr15 2162383 2162454 -83533300 + L1PB4 LINE L1 6045 6115 -41 2113 87 18 0 chr15 2163061 2163399 -83532355 - AluSc SINE Alu 0 343 1 402 294 114 92 chr15 2164293 2165127 -83530627 + L1M4 LINE L1 445 1296 -5553 1421 181 42 19 chr15 2167140 2167270 -83528484 - L1MA9 LINE L1 -387 5925 5799 261 0 0 0 chr15 2167270 2167299 -83528455 + (TG)n Simple_repeat Simple_repeat 2 30 0 1421 181 42 19 chr15 2167299 2167478 -83528276 - L1MA9 LINE L1 -513 5799 5609 1372 185 39 4 chr15 2167472 2167753 -83528001 + L1MA9 LINE L1 5972 6262 -50 * 316 187 22 112 chr15 2168005 2168139 -83527615 - L1MEc LINE L1 -4258 2138 2017 1656 112 29 105 chr15 2168140 2168481 -83527273 - AluYb8 SINE Alu 0 317 1 432 0 0 0 chr15 2169661 2169709 -83526045 + (CA)n Simple_repeat Simple_repeat 1 48 0 2117 119 7 10 chr15 2169888 2170190 -83525564 + AluSx SINE Alu 1 301 -11 331 138 231 0 chr15 2172319 2172384 -83523370 - MADE1 DNA Mariner 0 80 1 1075 274 18 26 chr15 2173695 2173927 -83521827 + L1M4 LINE L1 3355 3587 -3261 3008 102 13 11 chr15 2173927 2174389 -83521365 - L1PA10 LINE L1 0 6168 5706 1075 274 18 26 chr15 2174389 2174770 -83520984 + L1M4 LINE L1 3587 3963 -2885 348 125 0 0 chr15 2175002 2175066 -83520688 + (TCTCTG)n Simple_repeat Simple_repeat 3 66 0 2019 82 50 4 chr15 2175066 2175345 -83520409 - AluY SINE Alu -19 292 1 1834 164 3 3 chr15 2178215 2178508 -83517246 - AluSg1 SINE Alu -15 294 2 2056 125 4 4 chr15 2178684 2178999 -83516755 + AluSg SINE Alu 1 315 0 2509 117 13 8 chr15 2180193 2180586 -83515168 + L1PA12 LINE L1 5774 6168 0 502 259 0 32 chr15 2180908 2181093 -83514661 - MER104 DNA MER2_type -1 179 1 562 292 93 40 chr15 2181195 2181443 -83514311 - MIR SINE MIR -1 261 4 318 26 0 0 chr15 2182637 2182658 -83513096 + (TG)n Simple_repeat Simple_repeat 1 60 0 318 26 0 0 chr15 2182658 2182697 -83513057 + (TG)n Simple_repeat Simple_repeat 2 40 0 264 367 36 36 chr15 2183197 2183336 -83512418 - MER5B DNA MER1_type 0 178 40 710 186 0 0 chr15 2183341 2183459 -83512295 + FLAM_A SINE Alu 1 118 -15 1073 207 161 8 chr15 2183633 2183894 -83511860 - AluJb SINE Alu -1 301 1 340 293 101 22 chr15 2185643 2185853 -83509901 + MIR SINE MIR 7 231 -31 572 189 9 9 chr15 2187742 2187848 -83507906 + U6 snRNA snRNA 1 106 -1 295 371 53 0 chr15 2188544 2188695 -83507059 - MIR SINE MIR -47 215 57 3128 163 8 9 chr15 2189077 2189605 -83506149 - MER1A DNA MER1_type 0 527 1 300 192 0 0 chr15 2189833 2189885 -83505869 - MER91B DNA MER1_type -60 130 79 534 277 188 15 chr15 2190866 2191260 -83504494 - MLT1L LTR MaLR -153 462 1 181 296 56 28 chr15 2191266 2191337 -83504417 - L2 LINE L2 -565 2749 2677 852 224 47 47 chr15 2191342 2191556 -83504198 - MER58A DNA MER1_type -3 221 8 2066 153 7 0 chr15 2193337 2193644 -83502110 + AluSc SINE Alu 1 309 0 1364 195 136 49 chr15 2193747 2194236 -83501518 - LTR61 LTR ERV1 -2 593 1 28 61 0 0 chr15 2194730 2194779 -83500975 + AT_rich Low_complexity Low_complexity 1 49 0 52 50 0 0 chr15 2195823 2195903 -83499851 + AT_rich Low_complexity Low_complexity 1 80 0 1597 166 7 7 chr15 2197480 2197769 -83497985 - L1PA15 LINE L1 -1 6164 5876 635 214 1 39 chr15 2197870 2198088 -83497666 - L1M4 LINE L1 -2598 3548 3344 710 181 167 9 chr15 2198090 2198300 -83497454 - MSTA LTR MaLR 0 428 186 306 147 0 0 chr15 2198300 2198368 -83497386 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 2136 110 10 3 chr15 2198370 2198679 -83497075 - AluY SINE Alu 0 311 1 378 100 71 14 chr15 2198681 2198751 -83497003 - MSTA LTR MaLR -231 197 124 205 264 22 22 chr15 2198882 2198973 -83496781 + (TA)n Simple_repeat Simple_repeat 1 91 0 370 185 0 0 chr15 2199459 2199524 -83496230 - MER58A DNA MER1_type 0 224 160 941 167 25 19 chr15 2199528 2199690 -83496064 - AluJb SINE Alu -18 294 132 444 224 10 10 chr15 2199703 2199801 -83495953 - MER58A DNA MER1_type -9 98 1 25 65 0 0 chr15 2200250 2200296 -83495458 + AT_rich Low_complexity Low_complexity 1 46 0 2501 289 133 17 chr15 2200401 2200779 -83494975 + L2 LINE L2 1777 2110 -1203 1996 156 0 0 chr15 2200779 2201080 -83494674 - AluSx SINE Alu -11 301 1 2501 289 133 17 chr15 2201080 2201836 -83493918 + L2 LINE L2 2110 3040 -273 452 261 142 54 chr15 2202117 2202377 -83493377 + L2 LINE L2 3031 3313 0 21 0 0 0 chr15 2202510 2202531 -83493223 + AT_rich Low_complexity Low_complexity 1 21 0 1940 149 3 0 chr15 2202637 2202932 -83492822 - AluSx SINE Alu -16 296 1 22 0 0 0 chr15 2202937 2202959 -83492795 + AT_rich Low_complexity Low_complexity 1 22 0 1485 147 72 33 chr15 2203843 2204163 -83491591 + THE1C LTR MaLR 5 340 -35 507 73 0 0 chr15 2204163 2204231 -83491523 + (TA)n Simple_repeat Simple_repeat 1 68 0 1485 147 72 33 chr15 2204231 2204243 -83491511 + THE1C LTR MaLR 340 350 -25 3294 216 45 10 chr15 2204243 2204856 -83490898 - L1P5 LINE L1 -388 5766 5176 315 0 0 0 chr15 2204856 2204891 -83490863 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3294 216 45 10 chr15 2204891 2205832 -83489922 - L1P5 LINE L1 -978 5176 4125 3098 147 29 10 chr15 2206072 2206583 -83489171 + MER1A DNA MER1_type 1 521 -8 243 0 0 0 chr15 2207811 2207838 -83487916 + (TG)n Simple_repeat Simple_repeat 2 28 0 857 192 0 0 chr15 2207843 2207989 -83487765 - AluSg/x SINE Alu -31 279 134 1668 179 0 0 chr15 2209170 2209450 -83486304 + L1PA12 LINE L1 637 916 -6665 893 101 0 7 chr15 2209455 2209594 -83486160 + L1PA12 LINE L1 1616 1753 -5828 297 270 71 73 chr15 2209989 2210679 -83485075 + HSREP522 Satellite telomeric 1 688 -14 279 167 0 0 chr15 2211114 2211162 -83484592 - L1PA12 LINE L1 -6273 1308 1261 4165 236 56 34 chr15 2211182 2213635 -83482119 + L1PA13 LINE L1 482 3042 -3755 2490 87 0 0 chr15 2213644 2213955 -83481799 + AluY SINE Alu 1 311 0 1268 227 39 20 chr15 2214047 2214528 -83481226 + MER4-int LTR ERV1 109 641 -5957 981 276 0 0 chr15 2214642 2214896 -83480858 + AluY SINE Alu 58 311 0 2092 155 77 14 chr15 2214934 2215480 -83480274 + MER4-int LTR ERV1 29 652 -5946 669 159 82 159 chr15 2215507 2215871 -83479883 + MER4-int LTR ERV1 762 1097 -5501 6092 86 6 0 chr15 2215879 2216951 -83478803 - L1PA7 LINE L1 -1 6153 5051 3066 119 8 4 chr15 2216977 2217490 -83478264 + L1P LINE L1 4555 5069 -1077 279 0 0 0 chr15 2218290 2218321 -83477433 + (T)n Simple_repeat Simple_repeat 1 31 0 2073 146 0 3 chr15 2218321 2218684 -83477070 - L1P LINE L1 -3825 2321 1960 1352 234 3 17 chr15 2218854 2219153 -83476601 - AluJo SINE Alu -16 296 2 1225 196 30 9 chr15 2220113 2220578 -83475176 + L1P4 LINE L1 5027 5496 -670 26 0 0 0 chr15 2220578 2220604 -83475150 + AT_rich Low_complexity Low_complexity 1 26 0 2157 113 0 10 chr15 2220724 2221024 -83474730 + AluSg SINE Alu 1 297 -13 1008 285 87 63 chr15 2221105 2222922 -83472832 - L1MCc LINE L1 -4326 2796 727 251 345 53 35 chr15 2222960 2223131 -83472623 - L1MCc LINE L1 -5601 822 649 209 273 160 13 chr15 2224143 2224293 -83471461 - MIR SINE MIR 0 262 91 371 62 0 75 chr15 2224511 2224591 -83471163 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 1581 189 3 25 chr15 2224594 2224911 -83470843 - AluJb SINE Alu -2 310 1 2320 196 37 4 chr15 2226337 2226856 -83468898 - L1MB3 LINE L1 -2 6181 5646 840 225 171 52 chr15 2227445 2227925 -83467829 + L1M4 LINE L1 4399 4935 -1211 396 0 0 0 chr15 2227936 2227980 -83467774 + (TG)n Simple_repeat Simple_repeat 1 44 0 321 309 47 0 chr15 2228024 2228173 -83467581 + L1MA10 LINE L1 6169 6324 -10 576 278 87 20 chr15 2228411 2228663 -83467091 + LTR37B LTR ERV1 198 466 -2 309 298 24 0 chr15 2229961 2230129 -83465625 + (CA)n Simple_repeat Simple_repeat 2 173 0 243 270 19 13 chr15 2230171 2230330 -83465424 + (CA)n Simple_repeat Simple_repeat 2 161 0 282 238 49 12 chr15 2230348 2230512 -83465242 + (CA)n Simple_repeat Simple_repeat 2 171 0 2200 88 0 3 chr15 2230640 2230936 -83464818 - AluY SINE Alu -16 295 1 3205 50 0 4 chr15 2232113 2232571 -83463183 + L1P2 LINE L1 4984 5438 -716 6754 149 18 13 chr15 2234057 2235651 -83460103 - L1MA1 LINE L1 -9 6293 4687 2221 125 3 0 chr15 2235798 2236110 -83459644 + AluSq SINE Alu 1 313 0 1198 219 72 81 chr15 2236418 2236948 -83458806 - L1ME2 LINE L1 -1 6163 5639 318 0 0 0 chr15 2238190 2238229 -83457525 + HY3 scRNA scRNA 62 100 -1 27 0 0 0 chr15 2238229 2238256 -83457498 + AT_rich Low_complexity Low_complexity 1 27 0 2031 194 61 28 chr15 2238784 2239289 -83456465 - L1MA7 LINE L1 -1 6290 5769 2493 211 60 28 chr15 2239293 2239941 -83455813 - L1MB8 LINE L1 -2 6176 5508 * 4368 193 40 18 chr15 2239935 2241453 -83454301 - L1MA7 LINE L1 -510 5781 4230 21 0 0 0 chr15 2242765 2242786 -83452968 + AT_rich Low_complexity Low_complexity 1 21 0 333 140 0 0 chr15 2243913 2243970 -83451784 + (A)n Simple_repeat Simple_repeat 1 57 0 33 73 0 0 chr15 2244677 2244745 -83451009 + AT_rich Low_complexity Low_complexity 1 68 0 464 230 0 9 chr15 2244745 2244858 -83450896 - L1MA7 LINE L1 -1904 4242 4131 354 278 147 17 chr15 2248549 2248688 -83447066 - MIR SINE MIR -63 145 34 184 158 26 0 chr15 2248713 2248751 -83447003 + MIR SINE MIR 102 140 -122 273 167 0 0 chr15 2249631 2249685 -83446069 + (CA)n Simple_repeat Simple_repeat 2 55 0 401 249 35 47 chr15 2250401 2250570 -83445184 + MLT1L LTR MaLR 422 588 -27 278 177 203 0 chr15 2250717 2250796 -83444958 + MIR SINE MIR 71 165 -97 1381 220 11 11 chr15 2251197 2251474 -83444280 - AluJb SINE Alu -35 277 1 25 31 0 0 chr15 2251554 2251586 -83444168 + AT_rich Low_complexity Low_complexity 1 32 0 1774 159 120 26 chr15 2252173 2252564 -83443190 + MSTA LTR MaLR 1 428 0 736 195 0 8 chr15 2252892 2253020 -83442734 + AluJb SINE Alu 6 132 -180 572 231 88 6 chr15 2253052 2253232 -83442522 + FAM SINE Alu 1 59 0 216 0 0 0 chr15 2253847 2253871 -83441883 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1017 199 5 0 chr15 2253989 2254175 -83441579 - MER3 DNA MER1_type 0 209 23 22 0 0 0 chr15 2254948 2254970 -83440784 + AT_rich Low_complexity Low_complexity 1 22 0 511 281 88 38 chr15 2255089 2255312 -83440442 + L1ME4a LINE L1 5535 5780 -341 1713 174 7 3 chr15 2255312 2255599 -83440155 - AluSx SINE Alu -23 289 2 511 281 88 38 chr15 2255599 2255695 -83440059 + L1ME4a LINE L1 5780 5870 -251 196 309 31 62 chr15 2255775 2255937 -83439817 + MIR SINE MIR 105 261 -1 183 114 0 0 chr15 2255966 2256001 -83439753 + (CA)n Simple_repeat Simple_repeat 1 35 0 331 252 18 72 chr15 2256047 2256158 -83439596 + L1ME4a LINE L1 6014 6118 -3 1624 201 10 16 chr15 2256200 2256513 -83439241 + AluJo SINE Alu 1 311 -1 2302 128 103 140 chr15 2256555 2257148 -83438606 - LTR4 LTR ERV1 0 596 26 207 167 0 0 chr15 2258274 2258316 -83437438 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 652 236 62 0 chr15 2258409 2258570 -83437184 + MIR SINE MIR 20 190 -72 460 210 63 42 chr15 2259106 2259249 -83436505 + MLT1D LTR MaLR 48 193 -312 1201 181 4 69 chr15 2259251 2259527 -83436227 + AluJb SINE Alu 5 262 -50 1350 239 52 49 chr15 2263478 2264010 -83431744 + MER67C LTR ERV1 22 514 0 23 33 0 0 chr15 2264286 2264316 -83431438 + AT_rich Low_complexity Low_complexity 1 30 0 223 327 47 0 chr15 2264455 2264562 -83431192 - MIR SINE MIR -71 191 80 524 289 39 55 chr15 2264710 2265137 -83430617 + L1M3e LINE L1 466 1675 -4890 8133 234 43 33 chr15 2265375 2268225 -83427529 + L1M3e LINE L1 2007 4903 -2662 1586 184 6 32 chr15 2268225 2268540 -83427214 + AluJo SINE Alu 6 312 0 8133 234 43 33 chr15 2268540 2269690 -83426064 + L1M3e LINE L1 4903 6041 -1524 24 32 0 0 chr15 2270212 2270243 -83425511 + GC_rich Low_complexity Low_complexity 1 31 0 405 294 17 6 chr15 2271989 2272166 -83423588 + (CA)n Simple_repeat Simple_repeat 1 179 0 257 315 9 0 chr15 2272200 2272311 -83423443 + (CA)n Simple_repeat Simple_repeat 1 112 0 1054 169 15 0 chr15 2273321 2273516 -83422238 + MER49 LTR ERV1 715 912 -11 22 56 0 0 chr15 2275102 2275138 -83420616 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr15 2276647 2276677 -83419077 + AT_rich Low_complexity Low_complexity 1 30 0 38 39 0 0 chr15 2276700 2276752 -83419002 + AT_rich Low_complexity Low_complexity 1 52 0 2137 125 10 0 chr15 2276916 2277221 -83418533 - AluSp SINE Alu -3 310 3 653 318 52 16 chr15 2277444 2277828 -83417926 - L1MEc LINE L1 -3568 2647 2250 277 233 161 52 chr15 2277925 2278118 -83417636 - L1MEc LINE L1 -4282 2114 1901 320 301 82 68 chr15 2278154 2278300 -83417454 - L1MEc LINE L1 -4590 1806 1655 4778 17 6 0 chr15 2278300 2278817 -83416937 + L1PA3 LINE L1 5636 6155 0 320 301 82 68 chr15 2278817 2278889 -83416865 - L1MEc LINE L1 -4741 1655 1585 242 355 73 32 chr15 2279215 2279339 -83416415 - MIR SINE MIR -57 151 23 265 313 57 17 chr15 2280393 2280569 -83415185 + HERV16 LTR ERVL 2781 2963 -2033 1015 65 0 0 chr15 2284603 2284726 -83411028 + AluY SINE Alu 1 123 -188 22 35 0 0 chr15 2284726 2284755 -83410999 + AT_rich Low_complexity Low_complexity 1 29 0 21 95 0 0 chr15 2284920 2284983 -83410771 + AT_rich Low_complexity Low_complexity 1 63 0 312 129 86 43 chr15 2287110 2287180 -83408574 + AluJ/FRAM SINE Alu 229 301 -1 2095 124 0 3 chr15 2287188 2287487 -83408267 + AluSp SINE Alu 1 298 -15 1583 168 37 17 chr15 2287797 2288094 -83407660 - AluJb SINE Alu -9 303 1 248 293 217 0 chr15 2288148 2288182 -83407572 + MIR SINE MIR 2 27 -235 204 67 0 0 chr15 2288182 2288212 -83407542 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 248 293 217 0 chr15 2288212 2288334 -83407420 + MIR SINE MIR 27 192 -70 1761 101 0 0 chr15 2288362 2288600 -83407154 - AluSg/x SINE Alu -7 305 68 325 276 74 37 chr15 2288807 2288970 -83406784 - L1M4 LINE L1 -938 5208 5040 27 49 0 0 chr15 2288970 2289011 -83406743 + AT_rich Low_complexity Low_complexity 1 41 0 186 308 30 77 chr15 2289037 2289206 -83406548 - L2 LINE L2 -203 3069 2909 491 264 60 53 chr15 2289212 2289496 -83406258 - L1M4 LINE L1 -1091 5055 4770 21 95 0 0 chr15 2289642 2289705 -83406049 + AT_rich Low_complexity Low_complexity 1 63 0 987 114 29 105 chr15 2289852 2289959 -83405795 + L1PA16 LINE L1 5932 6017 -149 1693 173 0 3 chr15 2289959 2290248 -83405506 + AluJb SINE Alu 1 288 -24 987 114 29 105 chr15 2290248 2290350 -83405404 + L1PA16 LINE L1 6017 6125 -41 910 213 0 0 chr15 2290506 2290706 -83405048 + AluSg/x SINE Alu 116 315 0 1192 134 18 0 chr15 2290941 2291112 -83404642 + AluSq SINE Alu 1 174 -139 201 216 39 0 chr15 2291930 2291981 -83403773 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 21 0 0 0 chr15 2292018 2292039 -83403715 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr15 2292842 2292866 -83402888 + AT_rich Low_complexity Low_complexity 1 24 0 236 71 71 0 chr15 2293251 2293307 -83402447 + GA-rich Low_complexity Low_complexity 2 61 0 2338 155 62 56 chr15 2293314 2293816 -83401938 - LTR9 LTR ERV1 -107 505 1 1822 178 0 7 chr15 2293877 2294175 -83401579 + AluJo SINE Alu 1 296 -16 2032 118 14 3 chr15 2296514 2296802 -83398952 + AluSg SINE Alu 1 291 -19 8212 103 32 15 chr15 2296838 2297615 -83398139 - HSMAR1 DNA Mariner 0 1287 483 2217 124 0 0 chr15 2297615 2297922 -83397832 + AluSx SINE Alu 1 307 -5 8212 103 32 15 chr15 2297922 2298315 -83397439 - HSMAR1 DNA Mariner -804 483 98 200 156 44 0 chr15 2298442 2298487 -83397267 + (CA)n Simple_repeat Simple_repeat 2 48 0 1986 148 10 7 chr15 2298839 2299137 -83396617 + AluSx SINE Alu 1 299 -13 417 175 92 25 chr15 2299143 2299263 -83396491 - L1ME4a LINE L1 -2 6119 5992 186 103 0 0 chr15 2299599 2299628 -83396126 + (CATA)n Simple_repeat Simple_repeat 2 30 0 3061 50 0 2 chr15 2299646 2299678 -83396076 + L1P2 LINE L1 5111 5142 -1013 4762 26 4 9 chr15 2299678 2300216 -83395538 - L1PA4 LINE L1 -5 6150 5616 3061 50 0 2 chr15 2300216 2300689 -83395065 + L1PA4 LINE L1 5142 5609 -546 291 345 73 9 chr15 2300892 2301002 -83394752 - L2 LINE L2 -3 3269 3153 2279 95 0 3 chr15 2301211 2301515 -83394239 - AluY SINE Alu -8 303 1 2102 129 0 3 chr15 2304100 2304402 -83391352 - AluSx SINE Alu -11 301 1 192 273 132 74 chr15 2304516 2304637 -83391117 - MIR SINE MIR -58 150 23 263 300 36 36 chr15 2305391 2305501 -83390253 + L2 LINE L2 3204 3313 0 382 261 120 20 chr15 2305811 2305997 -83389757 + MIR3 SINE MIR 3 206 -2 294 392 0 0 chr15 2306614 2306716 -83389038 + MIR SINE MIR 48 149 -59 356 258 17 17 chr15 2307240 2307360 -83388394 - MER112 DNA MER1_type -103 157 38 832 154 24 0 chr15 2307382 2307505 -83388249 - FLAM_C SINE Alu -17 126 1 909 89 0 16 chr15 2307940 2308063 -83387691 - AluSg/x SINE Alu -24 288 168 2145 121 0 0 chr15 2308440 2308729 -83387025 - AluSx SINE Alu -23 289 1 1646 205 10 0 chr15 2309185 2309478 -83386276 - AluJo SINE Alu -16 296 1 2355 89 3 3 chr15 2309791 2310094 -83385660 - AluSq SINE Alu -10 303 1 965 179 151 114 chr15 2310640 2310992 -83384762 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr15 2312528 2312549 -83383205 + AT_rich Low_complexity Low_complexity 1 21 0 396 186 15 7 chr15 2314283 2314378 -83381376 + L1M3 LINE L1 5683 5780 -382 27 29 0 0 chr15 2314647 2314681 -83381073 + AT_rich Low_complexity Low_complexity 1 34 0 278 259 0 12 chr15 2314816 2314897 -83380857 + (TATATG)n Simple_repeat Simple_repeat 5 84 0 380 301 75 63 chr15 2315042 2315441 -83380313 + L1M4 LINE L1 2110 2513 -3633 1979 182 106 40 chr15 2315797 2316270 -83379484 + MLT1D LTR MaLR 1 504 -1 762 168 59 0 chr15 2316914 2317033 -83378721 - AluJb SINE Alu -185 127 2 824 210 80 34 chr15 2317233 2317264 -83378490 + L1ME3A LINE L1 5889 5917 -253 831 103 0 0 chr15 2317264 2317371 -83378383 - U6 snRNA snRNA 0 107 1 824 210 80 34 chr15 2317371 2317601 -83378153 + L1ME3A LINE L1 5917 6162 -8 271 178 55 27 chr15 2317762 2317835 -83377919 - L1ME3A LINE L1 -3 6167 6093 200 344 49 5 chr15 2317921 2318050 -83377704 + MIR SINE MIR 20 151 -67 382 221 43 80 chr15 2318243 2318406 -83377348 - MIR SINE MIR -16 246 90 1503 186 62 0 chr15 2318441 2318716 -83377038 - AluJb SINE Alu -20 292 1 665 211 54 92 chr15 2319203 2319463 -83376291 - L1ME1 LINE L1 -32 6134 5885 422 225 0 22 chr15 2319463 2319552 -83376202 - AluJo SINE Alu -176 136 50 974 175 55 23 chr15 2319556 2319773 -83375981 - L1ME1 LINE L1 -260 5906 5683 1735 156 43 0 chr15 2320159 2320441 -83375313 - AluJb SINE Alu -14 298 5 7560 259 70 26 chr15 2320454 2324477 -83371277 + L1ME LINE L1 1046 5208 -1007 1344 126 0 42 chr15 2324484 2324699 -83371055 + AluSc SINE Alu 1 206 -103 629 190 20 99 chr15 2324799 2324886 -83370868 + L1ME LINE L1 5298 5390 -846 1734 121 16 72 chr15 2324886 2325193 -83370561 - AluSx SINE Alu -18 294 5 629 190 20 99 chr15 2325193 2325316 -83370438 + L1ME LINE L1 5390 5493 -743 191 331 107 38 chr15 2325327 2325590 -83370164 - L2 LINE L2 -665 2649 2369 387 271 33 46 chr15 2325641 2325881 -83369873 - L1MC5 LINE L1 -179 7782 7546 1080 237 67 3 chr15 2327047 2327347 -83368407 + L1MD2 LINE L1 5904 6222 -137 22 0 0 0 chr15 2327564 2327586 -83368168 + AT_rich Low_complexity Low_complexity 1 22 0 499 125 20 0 chr15 2327954 2328046 -83367708 - L1MD1 LINE L1 0 7995 6146 7552 29 8 0 chr15 2328355 2329729 -83366025 - L1PA4 LINE L1 -1 6154 4776 239 186 0 17 chr15 2330914 2330973 -83364781 + CT-rich Low_complexity Low_complexity 5 62 0 22 0 0 0 chr15 2331841 2331863 -83363891 + AT_rich Low_complexity Low_complexity 1 22 0 2037 150 0 3 chr15 2331914 2332227 -83363527 - AluSx SINE Alu 0 312 1 2362 79 0 0 chr15 2333820 2334123 -83361631 - AluY SINE Alu -8 303 1 301 294 32 54 chr15 2334537 2334758 -83360996 + L1ME LINE L1 5616 5831 -359 301 335 152 6 chr15 2334983 2335147 -83360607 - MIR3 SINE MIR -7 201 14 1438 81 5 0 chr15 2335536 2335721 -83360033 + AluSp SINE Alu 1 186 -127 21 0 0 0 chr15 2335891 2335912 -83359842 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr15 2336074 2336116 -83359638 + (TAA)n Simple_repeat Simple_repeat 1 42 0 4647 70 22 31 chr15 2336154 2336591 -83359163 + PABL_B LTR ERV1 1 432 -235 2395 80 3 0 chr15 2336591 2336891 -83358863 + AluSp SINE Alu 1 301 -12 4647 70 22 31 chr15 2336891 2337098 -83358656 + PABL_B LTR ERV1 432 639 -28 326 336 76 72 chr15 2337290 2337805 -83357949 - LTR33A LTR ERVL -4 519 3 355 272 26 0 chr15 2337862 2337950 -83357804 - MIR3 SINE MIR -45 163 73 231 323 0 16 chr15 2338054 2338116 -83357638 + L2 LINE L2 3204 3264 -8 330 182 0 0 chr15 2338700 2338766 -83356988 + GA-rich Low_complexity Low_complexity 1 66 0 248 221 0 15 chr15 2339214 2339282 -83356472 + GA-rich Low_complexity Low_complexity 3 69 0 380 215 33 66 chr15 2339868 2339989 -83355765 + L1MC4 LINE L1 7434 7550 -492 453 292 38 14 chr15 2340419 2340628 -83355126 + L1MC4 LINE L1 7689 7902 -140 208 313 16 0 chr15 2340638 2340702 -83355052 + (TATG)n Simple_repeat Simple_repeat 4 68 0 338 230 36 43 chr15 2340703 2340842 -83354912 + L1MC4 LINE L1 7903 8040 -2 1557 157 28 0 chr15 2340911 2341159 -83354595 + AluJb SINE Alu 3 257 -55 271 207 0 0 chr15 2341243 2341301 -83354453 - MLT1I LTR MaLR -12 397 340 1522 186 11 0 chr15 2341446 2341761 -83353993 - AluJb SINE Alu 0 318 1 785 254 54 94 chr15 2342274 2342680 -83353074 + MLT1I LTR MaLR 18 407 -2 824 254 36 10 chr15 2343682 2343875 -83351879 - AluJb SINE Alu -28 284 87 2490 216 75 28 chr15 2344833 2345538 -83350216 - L1ME2 LINE L1 -37 6127 5390 229 200 0 0 chr15 2345575 2345615 -83350139 + L2 LINE L2 3265 3304 -9 1135 267 160 13 chr15 2347703 2348274 -83347480 - L2 LINE L2 -126 3187 2536 533 212 35 104 chr15 2348590 2348821 -83346933 + MER58C DNA MER1_type 1 215 0 21 0 0 0 chr15 2349826 2349847 -83345907 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr15 2349868 2349896 -83345858 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr15 2350523 2350551 -83345203 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr15 2350978 2350996 -83344758 + (CA)n Simple_repeat Simple_repeat 1 44 0 234 0 0 0 chr15 2350996 2351022 -83344732 + (CA)n Simple_repeat Simple_repeat 2 27 0 25 51 0 0 chr15 2351956 2351995 -83343759 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr15 2352490 2352512 -83343242 + AT_rich Low_complexity Low_complexity 1 22 0 465 297 62 16 chr15 2352720 2352912 -83342842 + L1ME LINE L1 3 203 -5867 320 280 33 47 chr15 2352953 2353103 -83342651 + L1ME LINE L1 595 742 -5328 231 225 0 0 chr15 2357382 2357422 -83338332 + Tigger7 DNA MER2_type 228 267 -2220 270 176 20 0 chr15 2357435 2357486 -83338268 + Tigger7 DNA MER2_type 2536 2587 0 2036 128 0 19 chr15 2357518 2357831 -83337923 - AluSx SINE Alu -5 307 1 2240 61 7 17 chr15 2358222 2358547 -83337207 - AluY SINE Alu 0 311 1 466 190 20 0 chr15 2358777 2358877 -83336877 + L1MB5 LINE L1 5743 5844 -330 285 289 40 27 chr15 2359370 2359519 -83336235 - L1MC/D LINE L1 -2342 5466 5316 * 857 215 47 6 chr15 2359498 2359728 -83336026 - L1MB4 LINE L1 -119 6047 5792 1357 248 126 63 chr15 2359728 2360065 -83335689 - L1MB4 LINE L1 -1375 4771 4457 246 114 0 0 chr15 2360065 2360100 -83335654 - U2 snRNA snRNA -153 35 1 1357 248 126 63 chr15 2360100 2360633 -83335121 - L1MB4 LINE L1 -1689 4457 3810 849 318 146 52 chr15 2360635 2361361 -83334393 + L2 LINE L2 1822 2615 -699 855 322 107 29 chr15 2361457 2361830 -83333924 + L2 LINE L2 2824 3239 -74 960 139 0 0 chr15 2361830 2361988 -83333766 + (TA)n Simple_repeat Simple_repeat 2 159 0 855 322 107 29 chr15 2361988 2362061 -83333693 + L2 LINE L2 3239 3305 -8 663 317 45 5 chr15 2362521 2362864 -83332890 - LTR33 LTR ERVL -2 519 102 334 291 60 15 chr15 2362938 2363072 -83332682 - MLT1L LTR MaLR -112 503 364 225 309 85 0 chr15 2363481 2363575 -83332179 - L3 LINE CR1 -157 1420 1319 26 82 0 0 chr15 2364711 2364772 -83330982 + AT_rich Low_complexity Low_complexity 1 61 0 1715 93 14 54 chr15 2415078 2415356 -83280398 + AluSp SINE Alu 34 300 -13 2002 121 0 36 chr15 2415358 2415664 -83280090 + AluSq SINE Alu 1 295 -18 334 307 42 28 chr15 2415697 2415909 -83279845 + L1MEc LINE L1 1850 2064 -4332 365 261 0 0 chr15 2415918 2416010 -83279744 + L1MEc LINE L1 2255 2346 -4050 475 225 8 23 chr15 2416110 2416239 -83279515 + AluSp/q SINE Alu 187 313 0 482 270 138 6 chr15 2416331 2416490 -83279264 + L1MD3 LINE L1 6663 6842 -1153 2297 125 0 0 chr15 2416523 2416835 -83278919 + AluSx SINE Alu 1 312 0 22 0 0 0 chr15 2416869 2416891 -83278863 + AT_rich Low_complexity Low_complexity 1 22 0 2086 121 3 0 chr15 2417163 2417452 -83278302 - AluSc SINE Alu -19 290 1 2493 123 14 34 chr15 2417452 2417866 -83277888 - L1MA3 LINE L1 -246 6059 5654 5473 146 11 53 chr15 2419140 2419196 -83276558 + L1M1 LINE L1 4286 4343 -1928 2311 105 0 0 chr15 2419196 2419501 -83276253 - AluSx SINE Alu -7 305 1 5473 146 11 53 chr15 2419501 2420749 -83275005 + L1M1 LINE L1 4343 5526 -745 21 36 0 0 chr15 2420961 2420989 -83274765 + AT_rich Low_complexity Low_complexity 1 28 0 38 61 0 0 chr15 2421445 2421511 -83274243 + AT_rich Low_complexity Low_complexity 1 66 0 1399 208 0 4 chr15 2422250 2422495 -83273259 - AluJo SINE Alu -68 244 1 243 0 0 0 chr15 2422535 2422562 -83273192 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2294 98 7 3 chr15 2422669 2422975 -83272779 + AluY SINE Alu 1 307 -4 357 285 89 0 chr15 2423008 2423131 -83272623 + MIR SINE MIR 129 262 0 1185 233 66 13 chr15 2424044 2424421 -83271333 - L1M4 LINE L1 -2118 4028 3632 2118 250 64 30 chr15 2424457 2425384 -83270370 - L1M4 LINE L1 -2436 3710 2753 1349 246 35 11 chr15 2425485 2425948 -83269806 + L1MEc LINE L1 3095 3568 -2647 1695 177 31 0 chr15 2425948 2426236 -83269518 - AluJo SINE Alu -15 297 1 1622 240 112 14 chr15 2426236 2426752 -83269002 - L1ME3 LINE L1 -107 6055 5489 1827 108 35 0 chr15 2427881 2428139 -83267615 - AluSq SINE Alu -11 302 36 1484 61 0 0 chr15 2428144 2428324 -83267430 - AluY SINE Alu -13 298 119 471 248 198 5 chr15 2428437 2428659 -83267095 + L1M4 LINE L1 2293 2557 -3589 385 188 0 0 chr15 2429352 2429416 -83266338 - AluSq SINE Alu -5 297 234 1250 132 0 0 chr15 2429416 2429583 -83266171 - AluSq SINE Alu -146 167 1 2090 203 69 19 chr15 2429583 2430149 -83265605 + L1M4 LINE L1 2683 3276 -2870 230 330 31 0 chr15 2430192 2430289 -83265465 - MIR SINE MIR -22 240 141 872 184 0 13 chr15 2430297 2430449 -83265305 - FRAM SINE Alu -21 155 6 1340 108 0 0 chr15 2430825 2431001 -83264753 + AluY SINE Alu 131 306 -5 2216 110 3 13 chr15 2431010 2431318 -83264436 + AluSq SINE Alu 1 305 -8 1534 151 43 18 chr15 2431319 2431597 -83264157 + L1MB3 LINE L1 5324 5608 -572 572 254 0 0 chr15 2431598 2431716 -83264038 + FLAM_C SINE Alu 2 119 -24 634 137 0 0 chr15 2431726 2431828 -83263926 + L1MB3 LINE L1 6074 6175 -8 25 31 0 0 chr15 2431828 2431860 -83263894 + AT_rich Low_complexity Low_complexity 1 32 0 2440 87 0 0 chr15 2432272 2432572 -83263182 + AluY SINE Alu 1 300 -11 457 226 73 7 chr15 2433145 2433282 -83262472 - MER21B LTR ERV1 -57 806 661 584 246 17 17 chr15 2433289 2433468 -83262286 + L1MDa LINE L1 1541 1719 -4821 2056 169 120 2 chr15 2433513 2433938 -83261816 + LTR53 LTR ERVL 5 479 -40 620 158 82 7 chr15 2434011 2434157 -83261597 + L1MC/D LINE L1 5323 5479 -880 326 319 142 14 chr15 2434989 2435071 -83260683 + L1MC4a LINE L1 5856 5926 -1882 1961 136 3 7 chr15 2435071 2435379 -83260375 + AluSq SINE Alu 1 307 -6 326 319 142 14 chr15 2435379 2435578 -83260176 + L1MC4a LINE L1 5926 6173 -1635 315 0 0 0 chr15 2435820 2435855 -83259899 + (TG)n Simple_repeat Simple_repeat 1 35 0 237 269 0 0 chr15 2435861 2435913 -83259841 + MER58B DNA MER1_type 13 64 -277 1650 87 8 75 chr15 2435958 2436210 -83259544 - AluSx SINE Alu -77 235 1 965 209 42 35 chr15 2436216 2436475 -83259279 + MER58B DNA MER1_type 80 340 -1 1952 140 13 13 chr15 2436706 2437006 -83258748 + AluSg1 SINE Alu 1 300 -9 6465 175 45 23 chr15 2438200 2438971 -83256783 - L1 LINE L1 -1984 4162 3345 2031 148 0 7 chr15 2438971 2439276 -83256478 - AluSx SINE Alu -9 303 1 6465 175 45 23 chr15 2439276 2439872 -83255882 - L1 LINE L1 -2801 3345 2764 * 7666 153 20 8 chr15 2439864 2441185 -83254569 - L1 LINE L1 -1158 4988 3652 1838 213 38 27 chr15 2441185 2441664 -83254090 - L1 LINE L1 -3384 2762 2279 1147 205 139 13 chr15 2441678 2441981 -83253773 + MLT1E1 LTR MaLR 305 645 -9 737 191 8 15 chr15 2442173 2442304 -83253450 + AluJo SINE Alu 12 141 -171 1784 150 18 3 chr15 2442306 2442592 -83253162 + AluJb SINE Alu 1 290 -22 52 0 0 0 chr15 2442592 2442644 -83253110 + AT_rich Low_complexity Low_complexity 1 52 0 2230 113 3 3 chr15 2442937 2443239 -83252515 + AluY SINE Alu 1 302 -9 806 160 0 0 chr15 2443347 2443472 -83252282 + FLAM_C SINE Alu 1 125 -18 2051 98 61 0 chr15 2443771 2444048 -83251706 - AluSc SINE Alu -15 294 1 2229 106 7 0 chr15 2444079 2444371 -83251383 - AluSx SINE Alu -18 294 1 810 260 56 86 chr15 2444479 2444910 -83250844 + L1MD1 LINE L1 5825 6242 0 2293 78 17 3 chr15 2445329 2445624 -83250130 + AluSx SINE Alu 1 299 -13 2032 100 21 21 chr15 2446293 2446583 -83249171 + AluSx SINE Alu 1 290 -22 2161 105 17 3 chr15 2447098 2447393 -83248361 - AluSq SINE Alu -14 299 1 191 188 21 0 chr15 2448576 2448624 -83247130 + GA-rich Low_complexity Low_complexity 1 49 0 35 88 0 0 chr15 2448949 2449040 -83246714 + GC_rich Low_complexity Low_complexity 1 91 0 25 31 0 0 chr15 2449069 2449101 -83246653 + GC_rich Low_complexity Low_complexity 1 32 0 1633 133 48 44 chr15 2449697 2449991 -83245763 + AluJo SINE Alu 1 295 -17 1290 123 0 0 chr15 2449995 2450166 -83245588 + AluSx SINE Alu 1 171 -141 422 130 0 0 chr15 2450267 2450336 -83245418 - AluS SINE Alu -242 70 2 578 234 114 10 chr15 2450337 2450538 -83245216 - L1 LINE L1 -3250 2896 2675 302 202 53 26 chr15 2450538 2450630 -83245124 + (TATATG)n Simple_repeat Simple_repeat 4 101 -19 2083 83 0 18 chr15 2450630 2450906 -83244848 + AluY SINE Alu 31 301 -10 302 202 53 26 chr15 2450906 2450927 -83244827 + (TATATG)n Simple_repeat Simple_repeat 101 120 0 2351 73 0 48 chr15 2450927 2451240 -83244514 + AluY SINE Alu 1 298 -13 330 229 133 0 chr15 2451242 2451347 -83244407 - L1 LINE L1 -3460 2686 2568 1339 101 106 0 chr15 2452317 2452525 -83243229 + MER30 DNA MER1_type 1 230 0 1621 146 92 0 chr15 2453508 2453769 -83241985 - AluJb SINE Alu -19 293 9 934 279 126 26 chr15 2454781 2455069 -83240685 - L1ME2 LINE L1 -112 6052 5794 1808 160 13 3 chr15 2455069 2455376 -83240378 - AluJb SINE Alu 0 312 3 934 279 126 26 chr15 2455376 2455588 -83240166 - L1ME2 LINE L1 -370 5794 5502 2152 133 3 3 chr15 2456124 2456433 -83239321 - AluSp SINE Alu -4 309 1 2186 131 0 0 chr15 2456456 2456762 -83238992 - AluSx SINE Alu -6 306 1 268 103 0 138 chr15 2457524 2457611 -83238143 + (GGGTG)n Simple_repeat Simple_repeat 4 78 0 237 281 35 18 chr15 2458272 2458386 -83237368 + Charlie5 DNA MER1_type 1 116 -2496 * 1135 232 3 10 chr15 2458381 2458691 -83237063 + Charlie5 DNA MER1_type 2222 2529 -83 1992 118 3 70 chr15 2458691 2459006 -83236748 - AluSx SINE Alu -18 294 1 200 160 40 0 chr15 2459027 2459077 -83236677 + T-rich Low_complexity Low_complexity 5 56 0 1952 152 0 3 chr15 2459111 2459394 -83236360 - AluSx SINE Alu -30 282 1 23 33 0 0 chr15 2460079 2460109 -83235645 + AT_rich Low_complexity Low_complexity 1 30 0 376 78 0 0 chr15 2460601 2460652 -83235102 - Alu SINE Alu -250 52 2 2205 125 3 0 chr15 2460872 2461176 -83234578 - AluSx SINE Alu -7 305 1 1676 154 7 7 chr15 2461286 2461559 -83234195 - AluSx SINE Alu -39 273 1 375 220 63 107 chr15 2462756 2462848 -83232906 - L1MC5 LINE L1 -49 7912 7817 2234 124 0 0 chr15 2462848 2463154 -83232600 - AluSq SINE Alu -7 306 1 375 220 63 107 chr15 2463154 2463379 -83232375 - L1MC5 LINE L1 -144 7817 7609 1278 154 6 101 chr15 2464005 2464232 -83231522 - AluJb SINE Alu 0 312 128 1729 162 0 29 chr15 2464232 2464540 -83231214 + AluSp SINE Alu 1 299 -14 1278 154 6 101 chr15 2464540 2464657 -83231097 - AluJb SINE Alu -184 128 1 1645 166 6 43 chr15 2464685 2465010 -83230744 + AluSp SINE Alu 1 313 0 764 229 13 48 chr15 2465045 2465158 -83230596 - AluJb SINE Alu -92 220 117 1654 163 7 10 chr15 2465158 2465465 -83230289 + AluSp SINE Alu 1 306 -7 764 229 13 48 chr15 2465465 2465578 -83230176 - AluJb SINE Alu -195 117 2 1637 149 3 50 chr15 2465613 2465935 -83229819 + AluSp SINE Alu 7 313 0 558 176 9 9 chr15 2465946 2466054 -83229700 - FLAM_C SINE Alu -34 109 2 264 108 0 0 chr15 2466083 2466120 -83229634 + AluSp SINE Alu 1 37 -265 2433 157 47 19 chr15 2466151 2466623 -83229131 - LTR15 LTR ERV1 -7 486 2 923 131 24 42 chr15 2466624 2466792 -83228962 + AluSp SINE Alu 28 192 -121 405 233 124 30 chr15 2466793 2466840 -83228914 - L1MC4a LINE L1 -1866 5942 5901 1390 175 26 63 chr15 2466840 2467143 -83228611 - AluJb SINE Alu -20 292 1 405 233 124 30 chr15 2467143 2467297 -83228457 - L1MC4a LINE L1 -1907 5901 5722 286 271 125 20 chr15 2467405 2467648 -83228106 + L1ME3A LINE L1 5257 5395 -769 350 296 78 31 chr15 2467705 2467978 -83227776 + L1ME4a LINE L1 5650 5934 -206 352 139 0 97 chr15 2468011 2468083 -83227671 + AluSx SINE Alu 1 54 -248 * 7589 87 14 21 chr15 2468082 2469146 -83226608 - MER11C LTR ERVK -14 1057 1 1556 113 96 0 chr15 2469146 2469376 -83226378 + AluSx SINE Alu 49 300 -12 225 243 307 21 chr15 2469719 2469859 -83225895 + L2 LINE L2 3114 3293 -20 813 196 25 27 chr15 2470499 2470686 -83225068 - L1MC3 LINE L1 -2 7765 6196 375 231 146 15 chr15 2471908 2472038 -83223716 + MER103 DNA DNA 8 154 -12 213 149 21 21 chr15 2472346 2472393 -83223361 + MER5A DNA MER1_type 121 167 -22 2728 42 0 0 chr15 2472716 2473027 -83222727 - AluY SINE Alu 0 311 1 1785 282 39 89 chr15 2475517 2476312 -83219442 + L1ME3A LINE L1 5407 6161 -9 225 0 0 0 chr15 2476514 2476539 -83219215 + (TTCCC)n Simple_repeat Simple_repeat 5 29 0 2227 71 0 3 chr15 2477175 2477498 -83218256 - AluY SINE Alu 0 322 1 2458 31 41 0 chr15 2478242 2478536 -83217218 - AluY SINE Alu -5 306 1 2816 228 66 40 chr15 2479713 2479971 -83215783 - L1ME1 LINE L1 -5 6161 5911 1931 149 0 3 chr15 2479971 2480280 -83215474 - AluJb SINE Alu -4 308 1 2816 228 66 40 chr15 2480280 2481660 -83214094 - L1ME1 LINE L1 -255 5911 4493 278 284 179 36 chr15 2481682 2482547 -83213207 + L1MEc LINE L1 829 1817 -4579 711 81 0 0 chr15 2482605 2482704 -83213050 - AluY SINE Alu -4 307 209 315 274 109 109 chr15 2482938 2482982 -83212772 + L1MEc LINE L1 1835 1878 -4337 2044 129 0 0 chr15 2482982 2483285 -83212469 + AluSx SINE Alu 1 303 -9 315 274 109 109 chr15 2483285 2483506 -83212248 + L1MEc LINE L1 1877 2100 -4115 1133 143 0 0 chr15 2483520 2483695 -83212059 + AluSg/x SINE Alu 121 295 -17 1696 194 48 18 chr15 2483695 2484087 -83211667 + L1MB4 LINE L1 5777 6180 0 633 207 90 59 chr15 2484879 2485101 -83210653 + L1MC5 LINE L1 7680 7908 -53 1778 104 12 0 chr15 2485697 2485956 -83209798 + AluSq SINE Alu 1 262 -51 1467 200 225 25 chr15 2485962 2486473 -83209281 + MER90 LTR ERV1 2 614 0 1921 156 3 3 chr15 2487099 2487406 -83208348 + AluJb SINE Alu 3 309 -3 397 303 30 12 chr15 2487409 2487574 -83208180 + L1MC3 LINE L1 6706 6873 -912 398 235 61 17 chr15 2487757 2487872 -83207882 + L1MC5 LINE L1 7107 7226 -735 351 286 109 11 chr15 2488006 2488181 -83207573 + L1MC5 LINE L1 7305 7496 -465 1085 189 55 103 chr15 2488188 2488358 -83207396 + MLT1B LTR MaLR 4 181 -215 2114 121 7 0 chr15 2488358 2488664 -83207090 + AluSp SINE Alu 5 312 -1 1085 189 55 103 chr15 2488664 2488749 -83207005 + MLT1B LTR MaLR 181 269 -127 2380 79 0 3 chr15 2488749 2489053 -83206701 + AluY SINE Alu 1 303 -8 1085 189 55 103 chr15 2489053 2489211 -83206543 + MLT1B LTR MaLR 269 396 0 386 243 52 66 chr15 2489216 2489504 -83206250 + L1MC5 LINE L1 7494 7777 -184 195 331 236 8 chr15 2489812 2490066 -83205688 + L2 LINE L2 2997 3308 -5 1032 254 53 22 chr15 2491422 2491745 -83204009 - MER58B DNA MER1_type -5 336 4 2068 225 70 39 chr15 2491899 2492486 -83203268 + MER77 LTR ERV1 1 605 0 2248 85 3 0 chr15 2492949 2493242 -83202512 + AluSc SINE Alu 1 294 -15 244 367 61 0 chr15 2496509 2496607 -83199147 + L2 LINE L2 3168 3271 -1 2220 92 7 0 chr15 2497043 2497338 -83198416 - AluSq SINE Alu -16 297 1 1855 163 0 0 chr15 2497347 2497636 -83198118 - AluJb SINE Alu -23 289 1 350 267 22 0 chr15 2499741 2499831 -83195923 + L1M4 LINE L1 2728 2819 -3327 514 231 35 35 chr15 2499899 2500102 -83195652 + L1M4 LINE L1 2847 3049 -3097 362 214 32 97 chr15 2500156 2500310 -83195444 + L1MC5 LINE L1 6957 7100 -861 530 295 70 44 chr15 2500478 2500932 -83194822 + L1MC5 LINE L1 7317 7782 -179 936 61 0 0 chr15 2500935 2501049 -83194705 + AluY SINE Alu 1 114 -197 2247 94 0 3 chr15 2501418 2501727 -83194027 - AluSq SINE Alu -5 308 1 314 217 80 51 chr15 2501729 2501904 -83193850 + L1MC4a LINE L1 5703 5882 -1926 1743 146 4 0 chr15 2503398 2503673 -83192081 + AluSg SINE Alu 1 276 -34 369 149 0 0 chr15 2503675 2503742 -83192012 + (CGGGA)n Simple_repeat Simple_repeat 4 70 0 192 40 0 0 chr15 2503764 2503789 -83191965 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4349 212 66 27 chr15 2503789 2504598 -83191156 + L1MDa LINE L1 1483 2259 -4281 1617 161 83 9 chr15 2504598 2504934 -83190820 - MER46B DNA MER2_type 0 236 1 4349 212 66 27 chr15 2504934 2505367 -83190387 + L1MDa LINE L1 2259 2795 -3745 2003 110 27 7 chr15 2505367 2505659 -83190095 + AluSq SINE Alu 1 298 -15 4349 212 66 27 chr15 2505659 2505911 -83189843 + L1MDa LINE L1 2795 3036 -3504 369 298 159 7 chr15 2506091 2506242 -83189512 + MER5A DNA MER1_type 1 174 -15 405 256 64 0 chr15 2507087 2507212 -83188542 + MIR3 SINE MIR 42 174 -34 324 309 59 59 chr15 2509426 2509630 -83186124 - MLT1L LTR MaLR -407 208 5 511 233 57 23 chr15 2510777 2510953 -83184801 + L1ME2 LINE L1 5982 6163 -1 1632 149 49 14 chr15 2510973 2511261 -83184493 + AluSx SINE Alu 1 298 -14 1851 95 106 0 chr15 2511889 2512153 -83183601 - AluSx SINE Alu -20 292 1 27 0 0 0 chr15 2512166 2512193 -83183561 + AT_rich Low_complexity Low_complexity 1 27 0 533 292 1 23 chr15 2512999 2514103 -83181651 + CT-rich Low_complexity Low_complexity 1 1078 0 2199 67 0 3 chr15 2514306 2514628 -83181126 + AluY SINE Alu 1 321 0 184 340 113 0 chr15 2514664 2514770 -83180984 - MER5A DNA MER1_type -48 141 24 214 317 195 0 chr15 2515112 2515235 -83180519 - MIR3 SINE MIR -9 199 53 1997 133 10 0 chr15 2515594 2515903 -83179851 - AluSp SINE Alu -1 312 1 532 234 188 20 chr15 2516038 2516235 -83179519 - MIR SINE MIR -10 252 23 270 254 105 26 chr15 2517836 2517950 -83177804 - L2 LINE L2 -3 3310 3188 409 301 66 0 chr15 2518087 2518223 -83177531 - MIR SINE MIR -70 192 48 222 250 0 0 chr15 2520162 2520250 -83175504 + G-rich Low_complexity Low_complexity 2 89 0 1921 125 3 10 chr15 2520775 2521063 -83174691 + AluSx SINE Alu 1 286 -26 603 51 0 0 chr15 2521064 2521143 -83174611 + (CA)n Simple_repeat Simple_repeat 2 80 0 790 151 68 14 chr15 2521529 2521675 -83174079 + MER5A DNA MER1_type 3 156 -33 1331 186 37 15 chr15 2522420 2522689 -83173065 + AluJo SINE Alu 1 275 -37 362 238 109 39 chr15 2522798 2523144 -83172610 + L1P2 LINE L1 5174 5565 -589 2006 117 3 0 chr15 2523715 2524054 -83171700 - AluSx SINE Alu 0 340 1 709 192 103 0 chr15 2524245 2524401 -83171353 + MER5A DNA MER1_type 16 187 -2 669 293 25 37 chr15 2524631 2524952 -83170802 + L1MC4 LINE L1 7725 8041 -1 262 221 130 0 chr15 2525449 2525526 -83170228 - L1M4 LINE L1 -1310 4836 4750 1663 85 4 8 chr15 2525543 2525779 -83169975 - AluY SINE Alu -13 298 64 871 29 0 0 chr15 2525879 2525982 -83169772 - AluY SINE Alu -208 103 1 847 316 168 14 chr15 2526712 2527333 -83168421 - L2 LINE L2 -245 3068 2353 233 269 60 0 chr15 2527509 2527576 -83168178 - L2 LINE L2 -1040 2274 2204 1855 183 49 16 chr15 2528194 2528582 -83167172 + LTR15 LTR ERV1 1 401 -92 741 220 13 48 chr15 2528586 2528699 -83167055 + AluJo SINE Alu 2 105 -207 1657 138 0 47 chr15 2528699 2529017 -83166737 - AluSp SINE Alu -10 303 1 741 220 13 48 chr15 2529017 2529130 -83166624 + AluJo SINE Alu 105 220 -92 252 33 0 0 chr15 2529132 2529162 -83166592 + AluJb SINE Alu 88 117 -185 1425 171 3 24 chr15 2529175 2529468 -83166286 - AluSp SINE Alu -20 293 7 1453 123 13 101 chr15 2529480 2529798 -83165956 - AluSx SINE Alu -1 311 22 580 161 8 17 chr15 2529805 2529923 -83165831 + FLAM_C SINE Alu 1 117 -16 1446 143 13 30 chr15 2529934 2530235 -83165519 - AluSp SINE Alu -17 296 1 759 223 60 33 chr15 2530264 2530388 -83165366 + AluJo SINE Alu 2 136 -176 1833 111 0 21 chr15 2530388 2530676 -83165078 - AluSq SINE Alu -15 298 17 759 223 60 33 chr15 2530676 2530766 -83164988 + AluJo SINE Alu 136 222 -90 1292 86 10 15 chr15 2530807 2531004 -83164750 - AluSg/x SINE Alu -2 308 113 430 241 142 61 chr15 2531292 2531369 -83164385 + L1M4 LINE L1 2128 2197 -3949 1961 104 20 14 chr15 2531369 2531666 -83164088 + AluSg SINE Alu 7 305 -5 430 241 142 61 chr15 2531666 2532243 -83163511 + L1M4 LINE L1 2197 2835 -3311 1375 122 77 12 chr15 2533257 2533504 -83162250 - L1PA10 LINE L1 -2 6166 5904 373 172 21 0 chr15 2533530 2533623 -83162131 + (TATATG)n Simple_repeat Simple_repeat 3 97 0 301 300 100 0 chr15 2533623 2533733 -83162021 + L1MC4 LINE L1 6583 6703 -1339 391 337 0 50 chr15 2533798 2533979 -83161775 + L1MC4 LINE L1 6531 6702 -1340 200 345 0 0 chr15 2534509 2534564 -83161190 - MIR SINE MIR -133 75 21 1842 146 7 13 chr15 2534783 2535092 -83160662 - AluJb SINE Alu -5 307 1 235 232 184 24 chr15 2535287 2535412 -83160342 - MER103 DNA DNA -20 146 2 852 173 64 99 chr15 2535629 2535941 -83159813 + AluY SINE Alu 1 301 0 570 291 44 27 chr15 2535945 2536019 -83159735 + L1M4 LINE L1 4378 4449 -1697 1377 200 28 92 chr15 2536019 2536409 -83159345 + MLT1A1 LTR MaLR 1 365 0 570 291 44 27 chr15 2536409 2536630 -83159124 + L1M4 LINE L1 4449 4678 -1468 726 176 8 0 chr15 2536642 2536761 -83158993 + FLAM_C SINE Alu 1 120 -13 207 0 0 0 chr15 2536767 2536790 -83158964 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1455 160 68 14 chr15 2536839 2537120 -83158634 - AluJb SINE Alu -16 296 1 180 0 0 0 chr15 2537128 2537148 -83158606 + (T)n Simple_repeat Simple_repeat 1 20 0 287 238 16 0 chr15 2537349 2537412 -83158342 - MIR SINE MIR -112 150 87 1497 175 20 37 chr15 2537641 2537938 -83157816 - AluJo SINE Alu -20 292 1 226 288 0 0 chr15 2537952 2538018 -83157736 + L1MC4 LINE L1 6640 6705 -1337 890 220 30 56 chr15 2538193 2538497 -83157257 - L1MA9 LINE L1 -30 6282 5987 211 194 0 0 chr15 2538670 2538706 -83157048 + (TCTCTG)n Simple_repeat Simple_repeat 5 40 0 456 143 0 0 chr15 2538706 2538790 -83156964 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 2063 128 3 3 chr15 2539262 2539574 -83156180 - AluJb SINE Alu 0 312 1 292 214 0 0 chr15 2539664 2539720 -83156034 + MER3 DNA MER1_type 1 56 -153 864 195 53 0 chr15 2539731 2539900 -83155854 + AluJb SINE Alu 133 310 -2 374 284 121 75 chr15 2539900 2540139 -83155615 + L1MEd LINE L1 931 1180 -4939 2013 113 0 0 chr15 2540144 2540453 -83155301 - AluY SINE Alu 0 309 1 21 0 0 0 chr15 2541451 2541472 -83154282 + AT_rich Low_complexity Low_complexity 1 21 0 3805 192 62 59 chr15 2543900 2544716 -83151038 - L1MB5 LINE L1 0 6174 5361 2201 113 0 0 chr15 2544716 2545027 -83150727 - AluSx SINE Alu -1 311 1 3805 192 62 59 chr15 2545027 2545920 -83149834 - L1MB5 LINE L1 -813 5361 4457 1579 209 70 25 chr15 2545925 2546066 -83149688 - L1MB5 LINE L1 -2486 3660 3527 2323 73 0 0 chr15 2546066 2546367 -83149387 - AluY SINE Alu -10 301 1 1579 209 70 25 chr15 2546367 2546610 -83149144 - L1MB5 LINE L1 -2619 3527 3243 2135 112 0 13 chr15 2546610 2546923 -83148831 - AluSc SINE Alu 0 309 1 1579 209 70 25 chr15 2546923 2547062 -83148692 - L1MB5 LINE L1 -2903 3243 3112 926 199 0 5 chr15 2547067 2547263 -83148491 - AluJb SINE Alu 0 312 118 1429 227 56 13 chr15 2547263 2547725 -83148029 - L1MB5 LINE L1 -3052 3094 2613 1530 148 0 44 chr15 2547858 2548129 -83147625 + AluJb SINE Alu 23 281 -31 201 139 0 0 chr15 2548144 2548187 -83147567 + (TC)n Simple_repeat Simple_repeat 2 44 0 46 54 0 0 chr15 2548187 2548261 -83147493 + AT_rich Low_complexity Low_complexity 1 74 0 1871 267 50 46 chr15 2548261 2549227 -83146527 - HERVL68 LTR ERVL -1920 1117 60 2328 176 109 0 chr15 2549235 2549740 -83146014 - MER68 LTR ERV1 -2 560 1 314 257 121 36 chr15 2549742 2549882 -83145872 - L1ME LINE L1 -339 5782 5631 1509 173 80 43 chr15 2552931 2553343 -83142411 - MLT1C LTR MaLR 0 467 1 871 239 128 51 chr15 2553344 2553733 -83142021 - MLT1C LTR MaLR -46 421 3 329 319 6 0 chr15 2554562 2554731 -83141023 + (TG)n Simple_repeat Simple_repeat 1 170 0 782 141 0 0 chr15 2555208 2555329 -83140425 + FLAM_A SINE Alu 20 140 -2 2084 112 0 13 chr15 2556154 2556459 -83139295 + AluSg SINE Alu 1 301 -9 2129 86 7 13 chr15 2558035 2558339 -83137415 - AluSx SINE Alu -10 302 1 316 217 217 19 chr15 2558362 2558468 -83137286 - L1ME4a LINE L1 0 6121 5995 356 242 10 0 chr15 2560505 2560604 -83135150 + MER5A DNA MER1_type 10 98 -80 2244 85 0 0 chr15 2560838 2561132 -83134622 + AluY SINE Alu 3 296 -15 856 135 0 81 chr15 2561132 2561317 -83134437 + AluSg/x SINE Alu 134 303 -9 992 99 0 0 chr15 2561433 2561564 -83134190 - AluY SINE Alu -180 131 1 506 317 48 78 chr15 2562906 2563284 -83132470 - L1MCa LINE L1 -4673 1753 1228 348 294 59 51 chr15 2563305 2563518 -83132236 - L1MCa LINE L1 -5063 1353 1143 2258 86 10 0 chr15 2563518 2563821 -83131933 - AluSg SINE Alu -4 306 1 348 294 59 51 chr15 2563821 2564080 -83131674 - L1MCa LINE L1 -5273 1143 877 384 274 18 0 chr15 2564584 2564697 -83131057 - L1MCa LINE L1 -5954 462 348 979 197 170 3 chr15 2565271 2565423 -83130331 + MER2 DNA MER2_type 2 127 -217 2448 74 0 0 chr15 2565423 2565734 -83130020 + AluY SINE Alu 1 311 0 979 197 170 3 chr15 2565734 2565875 -83129879 + MER2 DNA MER2_type 127 344 0 268 119 174 55 chr15 2565977 2566086 -83129668 + L1ME4a LINE L1 5999 6120 -1 935 178 40 0 chr15 2567130 2567304 -83128450 + MER58A DNA MER1_type 44 224 0 1727 125 30 56 chr15 2567629 2567934 -83127820 + AluSg SINE Alu 1 297 -13 261 57 0 0 chr15 2569256 2569291 -83126463 + (CCCCCA)n Simple_repeat Simple_repeat 6 40 0 895 163 0 18 chr15 2570416 2570582 -83125172 - 7SLRNA srpRNA srpRNA -63 257 95 267 287 189 0 chr15 2571288 2571410 -83124344 - MIR SINE MIR -70 192 48 1761 141 0 54 chr15 2571427 2571740 -83124014 - AluSx SINE Alu -15 297 2 222 216 39 0 chr15 2572780 2572831 -83122923 - MIR SINE MIR -61 147 95 184 250 231 0 chr15 2573168 2573220 -83122534 - MIR SINE MIR -111 151 88 229 173 27 80 chr15 2574025 2574046 -83121708 - L1MC4a LINE L1 -1853 5955 5934 246 62 0 0 chr15 2574046 2574078 -83121676 + (CA)n Simple_repeat Simple_repeat 2 33 0 229 173 27 80 chr15 2574078 2574131 -83121623 - L1MC4a LINE L1 -1874 5934 5885 322 278 70 17 chr15 2575409 2575524 -83120230 - L2 LINE L2 -5 3308 3188 286 336 131 0 chr15 2575544 2575681 -83120073 - MIR3 SINE MIR -23 185 31 342 250 10 48 chr15 2576659 2576763 -83118991 - MIR SINE MIR -115 147 48 2161 97 7 3 chr15 2576769 2577067 -83118687 - AluY SINE Alu -12 299 1 1184 179 0 5 chr15 2777080 2777275 -82918479 + MLT1A1 LTR MaLR 172 365 0 2973 277 58 64 chr15 2777437 2777588 -82918166 + L2 LINE L2 1531 1681 -1632 3486 47 21 36 chr15 2777588 2777928 -82917826 - L1PA8 LINE L1 -2 6170 5837 2348 110 0 0 chr15 2777928 2778229 -82917525 - AluSg SINE Alu -7 303 3 3486 47 21 36 chr15 2778229 2778360 -82917394 - L1PA8 LINE L1 -335 5837 5706 2973 277 58 64 chr15 2778360 2778513 -82917241 + L2 LINE L2 1681 1833 -1480 2367 79 0 23 chr15 2778513 2778816 -82916938 - AluY SINE Alu -13 298 3 2973 277 58 64 chr15 2778816 2779670 -82916084 + L2 LINE L2 1833 2676 -637 2529 70 0 6 chr15 2779670 2779983 -82915771 + AluY SINE Alu 1 311 0 2973 277 58 64 chr15 2779983 2780618 -82915136 + L2 LINE L2 2676 3313 0 2191 109 3 0 chr15 2780840 2781143 -82914611 - AluY SINE Alu -7 304 1 2274 141 0 57 chr15 2781232 2781505 -82914249 + L1PA13 LINE L1 5767 6010 -153 2350 78 0 0 chr15 2781505 2781825 -82913929 + AluY SINE Alu 1 320 0 2274 141 0 57 chr15 2781825 2781970 -82913784 + L1PA13 LINE L1 6010 6162 -1 358 241 8 0 chr15 2782055 2782311 -82913443 + (CA)n Simple_repeat Simple_repeat 1 258 0 471 291 0 22 chr15 2782362 2782544 -82913210 + (CA)n Simple_repeat Simple_repeat 1 178 0 408 264 9 5 chr15 2782555 2782774 -82912980 + (CA)n Simple_repeat Simple_repeat 1 220 0 514 294 0 17 chr15 2782881 2783061 -82912693 + (CA)n Simple_repeat Simple_repeat 2 178 0 195 114 0 0 chr15 2783122 2783157 -82912597 + (CA)n Simple_repeat Simple_repeat 2 36 0 278 342 80 35 chr15 2783735 2784133 -82911621 + L2 LINE L2 2288 2703 -611 194 350 117 15 chr15 2785478 2785615 -82910139 + L2 LINE L2 2916 3066 -206 493 269 15 8 chr15 2786226 2786360 -82909394 - L2 LINE L2 0 3313 3179 5687 129 25 18 chr15 2786448 2787395 -82908359 - L1PA15 LINE L1 0 6165 5213 * 10225 228 32 7 chr15 2787383 2789918 -82905836 - L1PA15 LINE L1 -1270 4876 2280 811 285 90 42 chr15 2791040 2791419 -82904335 + MLT1J2 LTR MaLR 39 435 -15 552 335 41 61 chr15 2791438 2791951 -82903803 - L2 LINE L2 -261 3052 2549 2951 191 20 42 chr15 2792028 2792621 -82903133 + LTR22 LTR ERVK 1 580 0 2291 231 23 0 chr15 2793328 2793891 -82901863 - L1M4 LINE L1 -813 5333 4758 1602 224 107 95 chr15 2793883 2794441 -82901313 - L1M4 LINE L1 -2069 4077 3507 * 2461 44 0 17 chr15 2794441 2794734 -82901020 + AluY SINE Alu 1 288 -23 1602 224 107 95 chr15 2794734 2794873 -82900881 - L1M4 LINE L1 -2639 3507 3371 398 253 11 0 chr15 2795017 2795108 -82900646 - L1MCb LINE L1 -5880 165 74 2061 113 3 33 chr15 2795753 2796054 -82899700 - AluSx SINE Alu -20 292 1 2155 120 0 23 chr15 2796323 2796631 -82899123 - AluSx SINE Alu -11 301 1 2483 47 7 3 chr15 2797025 2797323 -82898431 - AluY SINE Alu -12 299 1 2091 281 103 20 chr15 2797445 2798262 -82897492 + L1MD2 LINE L1 272 1156 -5384 2513 214 27 102 chr15 2798300 2799025 -82896729 + L1MD2 LINE L1 3906 4555 -1985 2322 88 0 10 chr15 2799025 2799322 -82896432 + AluY SINE Alu 1 294 -17 2513 214 27 102 chr15 2799322 2799475 -82896279 + L1MD2 LINE L1 4555 4718 -1822 206 61 0 30 chr15 2799515 2799530 -82896224 + (TATAA)n Simple_repeat Simple_repeat 1 15 -17 2248 103 0 7 chr15 2799530 2799821 -82895933 + AluSq SINE Alu 1 289 -24 206 61 0 30 chr15 2799821 2799838 -82895916 + (TATAA)n Simple_repeat Simple_repeat 15 32 0 1242 246 34 34 chr15 2799852 2800270 -82895484 + L1MD2 LINE L1 4766 5183 -1357 2488 242 107 62 chr15 2800328 2800493 -82895261 + L1MD2 LINE L1 5196 5352 -1401 194 0 0 37 chr15 2800493 2800520 -82895234 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2488 242 107 62 chr15 2800520 2800916 -82894838 + L1MD2 LINE L1 5352 5729 -1024 2112 121 7 3 chr15 2800916 2801213 -82894541 + AluSx SINE Alu 3 300 -12 2488 242 107 62 chr15 2801213 2801423 -82894331 + L1MD2 LINE L1 5729 5928 -825 2722 45 0 0 chr15 2801423 2801734 -82894020 + AluY SINE Alu 1 311 0 2488 242 107 62 chr15 2801734 2802455 -82893299 + L1MD2 LINE L1 5928 6741 -12 463 279 73 62 chr15 2804188 2804529 -82891225 - L1ME LINE L1 -420 5701 5357 2270 95 3 19 chr15 2804679 2804995 -82890759 - AluY SINE Alu 0 311 1 420 300 56 4 chr15 2807051 2807284 -82888470 + L1 LINE L1 3535 3779 -2367 208 302 0 44 chr15 2809673 2809855 -82885899 + (CGGGG)n Simple_repeat Simple_repeat 3 176 0 246 269 13 13 chr15 2811495 2811573 -82884181 - L2 LINE L2 -564 2750 2673 429 183 43 43 chr15 2812807 2812900 -82882854 - Tigger7 DNA MER2_type 0 2487 2395 1817 162 20 0 chr15 2812905 2813199 -82882555 - Tigger7 DNA MER2_type -219 514 215 1440 192 48 0 chr15 2813199 2813449 -82882305 + Tigger7 DNA MER2_type 1 262 -2225 557 160 0 40 chr15 2813452 2813552 -82882202 + Tigger7 DNA MER2_type 2492 2587 0 197 259 0 52 chr15 2815046 2815104 -82880650 - L2 LINE L2 -2 3311 3257 1577 182 0 57 chr15 2815720 2816038 -82879716 - AluJo SINE Alu -12 300 1 1668 256 63 47 chr15 2816074 2816321 -82879433 - L1ME2 LINE L1 -2 6162 5921 195 42 0 0 chr15 2816321 2816345 -82879409 + (GGGA)n Simple_repeat Simple_repeat 2 25 0 1668 256 63 47 chr15 2816345 2816821 -82878933 - L1ME2 LINE L1 -243 5921 5427 340 213 56 46 chr15 2816806 2816914 -82878840 - L1ME LINE L1 -598 5566 5458 * 1846 168 80 105 chr15 2816985 2817520 -82878234 - L1MC2 LINE L1 -9 6335 5814 3337 185 6 12 chr15 2817525 2818178 -82877576 - L1MC1 LINE L1 -3 6330 5682 2262 91 3 10 chr15 2818180 2818478 -82877276 - AluY SINE Alu -14 297 2 1622 273 75 24 chr15 2818480 2818651 -82877103 - L1MCc LINE L1 -3014 3927 3766 2323 79 4 0 chr15 2818651 2818972 -82876782 - AluSc SINE Alu 0 322 1 1622 273 75 24 chr15 2818972 2819624 -82876130 - L1MCc LINE L1 -3175 3766 3061 669 206 46 88 chr15 2819645 2819905 -82875849 - MLT2B1 LTR ERVL -41 491 282 363 188 62 21 chr15 2819935 2820031 -82875723 - MLT2D LTR ERVL -314 100 1 635 264 108 16 chr15 2820084 2820463 -82875291 - L1MCc LINE L1 -4134 2988 2575 341 86 17 0 chr15 2820493 2820551 -82875203 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 25 0 0 0 chr15 2820736 2820761 -82874993 + AT_rich Low_complexity Low_complexity 1 25 0 513 249 35 46 chr15 2820843 2821040 -82874714 - L2 LINE L2 -6 3307 3113 225 108 0 0 chr15 2821731 2821768 -82873986 + (CA)n Simple_repeat Simple_repeat 2 38 0 672 278 28 0 chr15 2821776 2821988 -82873766 - L1MCc LINE L1 -4604 2518 2301 5006 169 10 54 chr15 2821990 2822494 -82873260 + L1MA8 LINE L1 4784 5309 -982 2358 105 0 3 chr15 2822494 2822800 -82872954 + AluSx SINE Alu 6 310 -2 5006 169 10 54 chr15 2822800 2823857 -82871897 + L1MA8 LINE L1 5309 6287 -4 713 315 47 25 chr15 2823926 2824743 -82871011 - L1MCc LINE L1 -4888 1535 1180 186 43 0 0 chr15 2824998 2825021 -82870733 + (TTG)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr15 2826606 2826628 -82869126 + AT_rich Low_complexity Low_complexity 1 22 0 658 311 128 19 chr15 2827298 2827713 -82868041 + L2 LINE L2 2839 3298 -15 446 305 24 12 chr15 2827855 2828019 -82867735 + MIR SINE MIR 24 189 -73 23 0 0 0 chr15 2828239 2828262 -82867492 + AT_rich Low_complexity Low_complexity 1 23 0 2137 90 11 0 chr15 2828270 2828547 -82867207 + AluSg SINE Alu 1 280 -30 2523 59 3 0 chr15 2828547 2828852 -82866902 + AluY SINE Alu 1 306 -5 2600 222 64 67 chr15 2828889 2829733 -82866021 - L1MD2 LINE L1 -4 6355 5510 2540 52 3 3 chr15 2829733 2830043 -82865711 - AluY SINE Alu -1 310 1 2600 222 64 67 chr15 2830043 2830363 -82865391 - L1MD2 LINE L1 -849 5510 5191 2432 73 0 6 chr15 2830363 2830676 -82865078 + AluY SINE Alu 1 311 0 2600 222 64 67 chr15 2830676 2831261 -82864493 - L1MD2 LINE L1 -1168 5191 4622 219 36 0 0 chr15 2831421 2831449 -82864305 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1374 196 4 0 chr15 2831451 2831691 -82864063 - AluJb SINE Alu -30 282 42 2114 128 0 0 chr15 2832583 2832872 -82862882 + AluSx SINE Alu 1 289 -23 206 57 57 0 chr15 2834239 2834274 -82861480 + A-rich Low_complexity Low_complexity 3 39 0 1019 128 4 149 chr15 2834333 2834568 -82861186 + MLT1B LTR MaLR 190 390 0 271 290 0 0 chr15 2835164 2835226 -82860528 + MER81 DNA DNA 32 93 -21 2275 244 66 46 chr15 2835229 2836078 -82859676 - L1MD2 LINE L1 -1538 4608 3743 294 70 0 23 chr15 2836808 2836851 -82858903 + U2 snRNA snRNA 1 42 -146 376 341 60 27 chr15 2837005 2837304 -82858450 + L2 LINE L2 2301 2609 -705 254 321 43 36 chr15 2837415 2837555 -82858199 + L2 LINE L2 1959 2099 -1215 2064 131 24 3 chr15 2837803 2838093 -82857661 + AluJo SINE Alu 1 296 -16 231 178 78 67 chr15 2838834 2838924 -82856830 - MLT1L LTR MaLR -5 610 520 243 274 39 10 chr15 2839284 2839386 -82856368 + L1MC4 LINE L1 6600 6704 -1338 * 252 255 38 9 chr15 2839299 2839405 -82856349 - L1MC4 LINE L1 -1339 6703 6595 460 236 27 0 chr15 2839405 2839625 -82856129 + (TA)n Simple_repeat Simple_repeat 1 225 0 232 245 0 82 chr15 2839660 2839758 -82855996 - L1MC4 LINE L1 -1339 6703 6614 183 235 12 24 chr15 2839759 2839844 -82855910 + (TA)n Simple_repeat Simple_repeat 1 84 0 226 277 9 71 chr15 2839845 2839957 -82855797 + L1MC4 LINE L1 6614 6718 -1324 811 186 0 0 chr15 2840118 2840242 -82855512 - FLAM_C SINE Alu -18 125 2 2427 80 0 0 chr15 2840339 2840638 -82855116 + AluY SINE Alu 1 299 -12 279 318 45 18 chr15 2840649 2840759 -82854995 + L2 LINE L2 3160 3272 0 420 324 82 72 chr15 2841281 2841587 -82854167 + L2 LINE L2 2964 3272 0 2423 64 3 3 chr15 2841830 2842126 -82853628 - L1PA6 LINE L1 -1 6153 5858 2487 54 3 0 chr15 2842126 2842421 -82853333 + AluY SINE Alu 1 296 -15 3085 38 6 0 chr15 2842421 2842786 -82852968 - L1PA5 LINE L1 -1898 4248 3882 9924 36 0 0 chr15 2842786 2844684 -82851070 + L1PA5 LINE L1 4249 6149 -5 240 35 0 0 chr15 2844684 2844713 -82851041 + (TA)n Simple_repeat Simple_repeat 1 29 0 231 71 0 0 chr15 2844714 2844742 -82851012 - L1PA6 LINE L1 -258 5873 5846 * 756 16 0 157 chr15 2844739 2844805 -82850949 + L1P2 LINE L1 5391 5431 -723 2538 51 3 6 chr15 2844805 2845117 -82850637 + AluY SINE Alu 1 311 0 756 16 0 157 chr15 2845117 2845171 -82850583 + L1P2 LINE L1 5431 5492 -662 2115 125 0 0 chr15 2845344 2845641 -82850113 - AluSx SINE Alu -15 297 1 180 0 0 0 chr15 2845656 2845676 -82850078 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2329 53 3 7 chr15 2845678 2845962 -82849792 - AluY SINE Alu -24 287 5 189 419 31 16 chr15 2846046 2846175 -82849579 - L2 LINE L2 -1 3271 3141 26 0 0 0 chr15 2846440 2846466 -82849288 + AT_rich Low_complexity Low_complexity 1 26 0 253 354 97 0 chr15 2848011 2848155 -82847599 + MIR SINE MIR 31 188 -74 26 30 0 0 chr15 2848219 2848252 -82847502 + AT_rich Low_complexity Low_complexity 1 33 0 424 318 53 11 chr15 2848302 2848491 -82847263 + MIR SINE MIR 28 224 -38 21 57 0 0 chr15 2848496 2848531 -82847223 + AT_rich Low_complexity Low_complexity 1 35 0 239 311 36 44 chr15 2849052 2849300 -82846454 + L1 LINE L1 3532 3777 -2369 22 35 0 0 chr15 2850591 2850620 -82845134 + GC_rich Low_complexity Low_complexity 1 29 0 182 320 103 49 chr15 2850656 2850859 -82844895 - L2 LINE L2 -850 2464 2251 269 186 14 0 chr15 2851921 2851991 -82843763 + CT-rich Low_complexity Low_complexity 3 73 0 2120 114 7 7 chr15 2852199 2852506 -82843248 + AluSx SINE Alu 1 307 -5 195 298 41 50 chr15 2854243 2854364 -82841390 - L2 LINE L2 -609 2705 2586 225 238 202 24 chr15 2854367 2854451 -82841303 - L2 LINE L2 -1 3271 3173 955 273 73 23 chr15 2855292 2855659 -82840095 - L1M4c LINE L1 -2358 4024 3630 2037 147 144 5 chr15 2855659 2856034 -82839720 - MSTA LTR MaLR 0 428 2 955 273 73 23 chr15 2856034 2856105 -82839649 - L1M4c LINE L1 -2752 3630 3564 466 341 61 29 chr15 2856275 2856522 -82839232 + L2 LINE L2 2068 2336 -978 1514 199 14 7 chr15 2856522 2856842 -82838912 - AluJb SINE Alu 0 322 1 466 341 61 29 chr15 2856842 2857001 -82838753 + L2 LINE L2 2336 2488 -826 897 244 67 8 chr15 2857186 2857424 -82838330 - MLT1C LTR MaLR -2 465 214 27 62 0 0 chr15 2857826 2857874 -82837880 + AT_rich Low_complexity Low_complexity 1 48 0 1289 288 118 45 chr15 2857986 2858671 -82837083 - MER21B LTR ERV1 -128 735 1 3516 120 14 10 chr15 2858794 2859302 -82836452 - MER9 LTR ERVK -1 510 1 31286 83 6 5 chr15 2859305 2863637 -82832117 - HERVK9 LTR ERVK -2 8033 1669 2285 85 0 0 chr15 2863637 2863940 -82831814 + AluY SINE Alu 1 303 0 31286 83 6 5 chr15 2863940 2863986 -82831768 - HERVK9 LTR ERVK -6366 1669 1625 4469 101 18 21 chr15 2863986 2864650 -82831104 - HERVK9 LTR ERVK -5254 662 1 3467 99 47 12 chr15 2864650 2865144 -82830610 - MER9 LTR ERVK 0 511 1 2846 253 36 17 chr15 2865358 2866391 -82829363 - L1ME1 LINE L1 -5 6161 5006 518 273 72 36 chr15 2866842 2867201 -82828553 - L1M4c LINE L1 -2815 3567 3196 1188 244 107 46 chr15 2867202 2867831 -82827923 - L1M4c LINE L1 -3229 3153 2477 2112 139 0 0 chr15 2867831 2868126 -82827628 + AluSx SINE Alu 1 295 -17 1188 244 107 46 chr15 2868126 2868185 -82827569 - L1M4c LINE L1 -3905 2477 2423 2323 234 28 14 chr15 2868196 2868765 -82826989 - L1MD3 LINE L1 -8 7987 7411 414 294 8 0 chr15 2868769 2868888 -82826866 - MLT1F1 LTR MaLR -447 120 1 1322 240 11 35 chr15 2868889 2869260 -82826494 - L1MD3 LINE L1 -718 7277 6916 249 57 0 0 chr15 2869260 2869295 -82826459 + (TG)n Simple_repeat Simple_repeat 1 35 0 275 167 0 0 chr15 2869411 2869459 -82826295 - L1M4c LINE L1 -4740 1823 1776 247 137 39 0 chr15 2869460 2869511 -82826243 - L1M4c LINE L1 -4701 1681 1629 380 286 25 26 chr15 2869536 2869547 -82826207 - L1M4c LINE L1 -4816 1566 1556 2236 114 0 19 chr15 2869547 2869864 -82825890 - AluY SINE Alu 0 311 1 2323 119 0 0 chr15 2869864 2870174 -82825580 - AluSq SINE Alu -3 310 1 380 286 25 26 chr15 2870174 2870361 -82825393 - L1M4c LINE L1 -4824 1558 1266 324 143 0 0 chr15 2870386 2870435 -82825319 - Alu SINE Alu -252 50 2 1910 247 84 13 chr15 2870435 2871066 -82824688 - L1MCc LINE L1 -4823 2118 1443 288 302 68 27 chr15 2871380 2871602 -82824152 - MER41B LTR ERV1 -230 405 175 300 303 10 0 chr15 2871702 2871801 -82823953 - PRIMA41-int LTR ERV1 -4 7752 7653 1966 149 0 10 chr15 2872735 2873036 -82822718 - AluSx SINE Alu -13 299 2 653 360 38 7 chr15 2873337 2873787 -82821967 - PRIMA41-int LTR ERV1 -1934 5822 5359 267 266 0 0 chr15 2874188 2874252 -82821502 - PRIMA41-int LTR ERV1 -1838 5253 5190 2009 138 0 3 chr15 2874546 2874842 -82820912 + AluSx SINE Alu 1 295 -17 2526 71 3 0 chr15 2875213 2875523 -82820231 - AluY SINE Alu 0 311 1 364 269 105 46 chr15 2875764 2875983 -82819771 - MER41B LTR ERV1 -220 415 184 822 190 0 0 chr15 2876018 2876160 -82819594 - L1PA15 LINE L1 0 6165 6024 1122 220 36 11 chr15 2876239 2876539 -82819215 - L1MCc LINE L1 -5711 711 58 500 216 36 91 chr15 2876593 2876818 -82818936 - L1MEc LINE L1 -4203 2281 2006 320 220 34 30 chr15 2876783 2876946 -82818808 + (TA)n Simple_repeat Simple_repeat 1 219 -69 * 26 74 0 0 chr15 2876946 2877000 -82818754 + AT_rich Low_complexity Low_complexity 1 54 0 320 220 34 30 chr15 2877000 2877071 -82818683 + (TA)n Simple_repeat Simple_repeat 219 288 0 274 243 45 62 chr15 2877026 2877269 -82818485 - L1MEc LINE L1 -4361 2065 1827 * 40901 34 23 2 chr15 2877272 2883296 -82812458 + L1PA3 LINE L1 2 6152 -3 24 0 0 0 chr15 2883296 2883320 -82812434 + AT_rich Low_complexity Low_complexity 1 24 0 476 246 44 60 chr15 2883328 2883576 -82812178 - L1MEc LINE L1 -4668 1939 1696 772 122 0 0 chr15 2883915 2884038 -82811716 - AluSg/x SINE Alu -1 308 186 3203 173 58 6 chr15 2884038 2884717 -82811037 - L1MA8 LINE L1 -342 5949 5194 1393 188 117 56 chr15 2884717 2884809 -82810945 + MER47B DNA MER2_type 1 86 -2237 2500 57 0 0 chr15 2884809 2885106 -82810648 - AluY SINE Alu -14 297 1 1393 188 117 56 chr15 2885106 2885407 -82810347 + MER47B DNA MER2_type 86 418 0 3203 173 58 6 chr15 2885407 2885817 -82809937 - L1MA8 LINE L1 -1097 5194 4807 1015 98 0 0 chr15 2885817 2885949 -82809805 - AluY SINE Alu -179 132 1 1242 177 24 0 chr15 2885956 2886204 -82809550 - L1MA8 LINE L1 -1330 4816 4563 520 273 147 74 chr15 2886490 2887326 -82808428 + L1M2 LINE L1 424 1403 -5446 1547 195 25 6 chr15 2887471 2887830 -82807924 - L1MA8 LINE L1 -1613 4533 4168 619 167 0 9 chr15 2887831 2887939 -82807815 + AluSq/x SINE Alu 2 108 -205 1686 126 0 4 chr15 2887939 2888178 -82807576 + AluSx SINE Alu 62 299 -13 2299 75 16 0 chr15 2888507 2888813 -82806941 - AluY SINE Alu 0 311 1 418 220 9 0 chr15 2888967 2889076 -82806678 - L1MEc LINE L1 -4110 2286 2177 239 189 0 19 chr15 2889289 2889342 -82806412 + MLT1A1 LTR MaLR 82 133 -232 2236 151 9 16 chr15 2890784 2891216 -82804538 + L1 LINE L1 4548 4976 -1170 274 226 7 55 chr15 2891331 2891477 -82804277 + (CACCC)n Simple_repeat Simple_repeat 4 142 0 391 218 23 74 chr15 2891701 2891917 -82803837 - L1MEc LINE L1 -4355 2041 1837 744 260 0 40 chr15 2891978 2892201 -82803553 - MER20 DNA MER1_type -5 214 1 295 283 0 19 chr15 2892201 2892307 -82803447 - L1MEc LINE L1 -4627 1769 1666 723 181 30 0 chr15 2892310 2892476 -82803278 - L1MB5 LINE L1 -6 6168 5998 2101 244 45 6 chr15 2892485 2893178 -82802576 - L1MB5 LINE L1 -221 5953 5230 450 160 13 173 chr15 2893182 2893407 -82802347 + L1M4 LINE L1 3718 3906 -2240 * 991 197 43 36 chr15 2893385 2893689 -82802065 - L1MCa LINE L1 -4408 2236 1931 1661 185 10 3 chr15 2893691 2893988 -82801766 - AluJb SINE Alu -2 310 12 964 223 137 42 chr15 2894041 2894404 -82801350 - L1M4 LINE L1 -496 5678 5267 1787 215 3 8 chr15 2894404 2894771 -82800983 + MLT1A1 LTR MaLR 1 365 0 964 223 137 42 chr15 2894771 2894825 -82800929 - L1M4 LINE L1 -907 5267 5220 2301 76 0 3 chr15 2894969 2895272 -82800482 - AluY SINE Alu -9 302 1 299 301 59 30 chr15 2895333 2895457 -82800297 - L1MCa LINE L1 -6298 244 110 215 31 31 0 chr15 2895457 2895489 -82800265 + (TTA)n Simple_repeat Simple_repeat 1 33 0 299 301 59 30 chr15 2895489 2895567 -82800187 - L1MCa LINE L1 -6432 110 36 347 301 36 30 chr15 2895602 2895964 -82799790 - L1MEc LINE L1 -4724 1672 1309 409 298 95 34 chr15 2896022 2896465 -82799289 - L1MEc LINE L1 -5224 1172 703 608 260 27 18 chr15 2896476 2896699 -82799055 - L1MEc LINE L1 -5728 668 444 2127 106 30 0 chr15 2896819 2897121 -82798633 - AluY SINE Alu 0 311 1 2201 129 0 3 chr15 2898198 2898508 -82797246 - AluSx SINE Alu -3 309 1 198 0 0 0 chr15 2898570 2898592 -82797162 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 324 236 126 50 chr15 2898698 2898897 -82796857 - L1MC/D LINE L1 -2338 5470 5257 2528 60 0 0 chr15 2899072 2899371 -82796383 - AluY SINE Alu -12 299 1 347 252 148 82 chr15 2899461 2899731 -82796023 - L1ME LINE L1 -347 5774 5487 2119 113 3 7 chr15 2899876 2900186 -82795568 - AluSx SINE Alu -3 309 1 189 74 0 0 chr15 2900686 2900713 -82795041 + (T)n Simple_repeat Simple_repeat 1 27 0 384 168 38 23 chr15 2901181 2901312 -82794442 + GA-rich Low_complexity Low_complexity 2 134 0 293 274 43 26 chr15 2901415 2901532 -82794222 + MIR SINE MIR 50 168 -94 214 135 19 19 chr15 2901669 2901721 -82794033 + T-rich Low_complexity Low_complexity 3 54 0 22 35 0 0 chr15 2901818 2901847 -82793907 + AT_rich Low_complexity Low_complexity 1 29 0 302 311 79 66 chr15 2902168 2902486 -82793268 - L1ME4a LINE L1 -199 5922 5601 22 0 0 0 chr15 2903022 2903044 -82792710 + AT_rich Low_complexity Low_complexity 1 22 0 390 195 8 24 chr15 2904012 2904135 -82791619 - L1MC/D LINE L1 -1709 4437 4317 2285 231 89 16 chr15 2904143 2904885 -82790869 - L1MD1 LINE L1 -19 6223 5428 573 203 152 0 chr15 2904896 2905034 -82790720 - AluJo SINE Alu -6 296 138 311 154 0 0 chr15 2905070 2905122 -82790632 - AluJo SINE Alu -168 134 83 950 149 37 80 chr15 2905123 2905201 -82790553 - AluJo SINE Alu -132 180 100 1740 48 5 0 chr15 2905201 2905410 -82790344 + AluY SINE Alu 102 311 0 950 149 37 80 chr15 2905410 2905519 -82790235 - AluJo SINE Alu -212 100 1 1208 227 52 44 chr15 2905519 2905702 -82790052 - L1MD1 LINE L1 -743 5403 5223 5884 21 0 0 chr15 2905702 2906378 -82789376 - L1PA3 LINE L1 -2 6153 5478 1208 227 52 44 chr15 2906378 2906865 -82788889 - L1MD1 LINE L1 -923 5223 4769 856 168 0 66 chr15 2906873 2907023 -82788731 - L1MB7 LINE L1 -16 6168 6032 2099 133 0 0 chr15 2907023 2907325 -82788429 + AluSx SINE Alu 1 302 -10 856 168 0 66 chr15 2907325 2907370 -82788384 - L1MB7 LINE L1 -152 6032 5986 342 177 0 0 chr15 2907370 2907432 -82788322 - AluJ/FLAM SINE Alu -240 62 1 997 226 75 81 chr15 2907432 2907579 -82788175 - L1M4 LINE L1 -958 5424 5278 188 35 35 0 chr15 2907579 2907608 -82788146 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 997 226 75 81 chr15 2907608 2908096 -82787658 - L1M4 LINE L1 -1104 5278 4791 1578 239 23 8 chr15 2908096 2908486 -82787268 - MSTD LTR MaLR 0 396 1 997 226 75 81 chr15 2908486 2908552 -82787202 - L1M4 LINE L1 -1591 4791 4726 2629 176 41 9 chr15 2908558 2909097 -82786657 - L1PA16 LINE L1 -2 6164 5609 897 196 18 5 chr15 2909099 2909318 -82786436 + L1 LINE L1 4368 4589 -1557 4804 256 75 17 chr15 2909321 2910624 -82785130 - L1M4 LINE L1 -1653 4729 3503 2231 113 0 3 chr15 2910624 2910925 -82784829 - AluSq SINE Alu -13 300 1 4804 256 75 17 chr15 2910925 2911997 -82783757 - L1M4 LINE L1 -2879 3503 2221 517 192 8 0 chr15 2912001 2912131 -82783623 - L1MA4A LINE L1 -5 6298 6168 572 81 23 0 chr15 2912137 2912223 -82783531 - L1MA1 LINE L1 -4 6298 6211 2519 83 0 0 chr15 2912223 2912574 -82783180 + L1M1 LINE L1 5429 5779 -525 1034 181 48 4 chr15 2912567 2912794 -82782960 - L1MA4 LINE L1 -118 6182 5946 * 21 71 0 0 chr15 2912794 2912836 -82782918 + AT_rich Low_complexity Low_complexity 1 42 0 2385 86 0 10 chr15 2912912 2913225 -82782529 - AluY SINE Alu -1 310 1 385 41 0 0 chr15 2913249 2913298 -82782456 - L1PA7 LINE L1 -8 6146 6098 2009 107 13 0 chr15 2913298 2913596 -82782158 + L1P3 LINE L1 5427 5728 -426 3430 157 26 26 chr15 2913611 2914012 -82781742 - L1MA4 LINE L1 -359 5941 5541 2648 20 0 0 chr15 2914012 2914310 -82781444 - AluYa5 SINE Alu -13 298 1 3430 157 26 26 chr15 2914310 2914794 -82780960 - L1MA4 LINE L1 -759 5541 5054 1954 129 0 0 chr15 2914794 2915057 -82780697 - AluSx SINE Alu -16 296 34 3430 157 26 26 chr15 2915057 2915120 -82780634 - L1MA4 LINE L1 -1246 5054 4992 22 35 0 0 chr15 2915134 2915163 -82780591 + AT_rich Low_complexity Low_complexity 1 29 0 1720 116 0 0 chr15 2915163 2915388 -82780366 - AluSc SINE Alu -27 282 58 395 285 5 24 chr15 2915393 2915600 -82780154 - L1M4c LINE L1 -4182 2202 2000 1761 280 50 30 chr15 2915608 2916548 -82779206 - L1M4 LINE L1 -1554 5294 4336 1781 244 42 72 chr15 2916559 2916705 -82779049 + MER77 LTR ERV1 1 150 -455 2435 83 0 3 chr15 2916705 2917017 -82778737 - AluY SINE Alu 0 311 1 1781 244 42 72 chr15 2917017 2917485 -82778269 + MER77 LTR ERV1 150 597 -8 205 138 0 0 chr15 2917555 2917584 -82778170 + (TTC)n Simple_repeat Simple_repeat 2 30 0 1233 326 14 15 chr15 2917584 2918176 -82777578 + MER21-int LTR ERV1 3079 3669 -3089 1479 227 47 31 chr15 2918176 2919001 -82776753 - L1M4 LINE L1 -3415 3433 2598 260 98 0 39 chr15 2919006 2919057 -82776697 - Alu SINE Alu 0 300 252 2214 194 10 12 chr15 2919071 2919587 -82776167 - L1M4 LINE L1 -4916 1933 1419 229 300 0 0 chr15 2919673 2919733 -82776021 + L1M2b LINE L1 679 738 -6471 815 307 86 79 chr15 2919797 2920913 -82774841 - L1M4 LINE L1 -5446 1403 280 594 311 10 19 chr15 2921092 2921298 -82774456 + MER21-int LTR ERV1 1669 1872 -2319 2312 76 0 45 chr15 2921369 2921683 -82774071 - AluY SINE Alu -10 301 2 222 191 0 0 chr15 2921883 2921930 -82773824 + (CA)n Simple_repeat Simple_repeat 2 48 0 2038 158 3 0 chr15 2921952 2922263 -82773491 - AluSx SINE Alu 0 312 1 2263 172 17 2 chr15 2922683 2923091 -82772663 - MSTB1 LTR MaLR -15 417 4 2955 280 40 68 chr15 2923454 2923774 -82771980 + MER21-int LTR ERV1 2014 2341 -1850 3661 110 178 0 chr15 2923774 2924358 -82771396 + LTR12 LTR ERV1 1 688 0 2955 280 40 68 chr15 2924358 2925474 -82770280 + MER21-int LTR ERV1 2341 3410 -781 367 287 17 6 chr15 2925494 2925668 -82770086 - L1M4 LINE L1 -3229 2917 2742 3375 191 20 26 chr15 2925819 2926610 -82769144 + L1MB3 LINE L1 5397 6182 -1 182 387 91 5 chr15 2926741 2926927 -82768827 - L2 LINE L2 -2298 1016 815 22 0 0 0 chr15 2929637 2929659 -82766095 + AT_rich Low_complexity Low_complexity 1 22 0 3557 189 52 14 chr15 2930876 2931644 -82764110 - L1MC3 LINE L1 -1677 6526 5730 1498 192 15 4 chr15 2931681 2931940 -82763814 + Tigger7 DNA MER2_type 59 320 -413 2360 187 30 117 chr15 2931940 2932582 -82763172 - LTR8 LTR ERV1 0 691 -5 2758 88 6 30 chr15 2932582 2932817 -82762937 + THE1A LTR MaLR 1 225 -130 2510 67 0 0 chr15 2932817 2933114 -82762640 + AluY SINE Alu 1 297 -14 2758 88 6 30 chr15 2933114 2933242 -82762512 + THE1A LTR MaLR 225 355 0 12047 96 7 13 chr15 2933242 2934831 -82760923 + THE1A-int LTR MaLR 1 1580 0 2784 93 6 0 chr15 2934831 2935184 -82760570 + THE1A LTR MaLR 1 355 0 2360 187 30 117 chr15 2935184 2935292 -82760462 - LTR8 LTR ERV1 -571 120 4 1104 131 47 0 chr15 2935293 2935484 -82760270 + Tigger7 DNA MER2_type 315 514 -219 452 221 0 0 chr15 2935506 2935592 -82760162 + Tigger7 DNA MER2_type 2501 2586 -1 744 241 19 6 chr15 2935645 2935803 -82759951 - AluJb SINE Alu -151 161 2 477 257 62 24 chr15 2935807 2936017 -82759737 - L1MC3 LINE L1 -878 5686 5469 1183 83 25 0 chr15 2936023 2936180 -82759574 - MLT2A2 LTR ERVL 0 453 293 1915 131 37 7 chr15 2936228 2936526 -82759228 - MLT2A2 LTR ERVL -145 308 2 402 191 22 226 chr15 2936526 2936661 -82759093 - L1MC3 LINE L1 -1096 5468 5434 2092 131 3 0 chr15 2936661 2936952 -82758802 - AluSq SINE Alu -21 292 1 402 191 22 226 chr15 2936952 2937135 -82758619 - L1MC3 LINE L1 -1130 5434 5215 3318 255 76 50 chr15 2937466 2938149 -82757605 - L1MC3 LINE L1 -1336 5228 4564 4901 15 0 2 chr15 2938149 2938673 -82757081 + L1PA3 LINE L1 5629 6151 -4 3318 255 76 50 chr15 2938673 2939483 -82756271 - L1MC3 LINE L1 -2000 4564 3697 268 230 10 115 chr15 2939549 2939749 -82756005 - L1MC3 LINE L1 -4892 1672 1494 315 203 14 72 chr15 2939862 2940000 -82755754 - L1MC3 LINE L1 -5145 1419 1290 11395 202 19 19 chr15 2940001 2941527 -82754227 - L1PA16 LINE L1 -3 6163 4639 2066 161 30 25 chr15 2941527 2941888 -82753866 + THE1B LTR MaLR 1 363 -1 11395 202 19 19 chr15 2941888 2942152 -82753602 - L1PA16 LINE L1 -1527 4639 4377 2504 66 0 0 chr15 2942152 2942454 -82753300 - AluY SINE Alu -9 302 1 11395 202 19 19 chr15 2942454 2944349 -82751405 - L1PA16 LINE L1 -1789 4377 2482 656 265 100 0 chr15 2944490 2944739 -82751015 - L1MEc LINE L1 -3676 2453 2180 * 1866 233 72 39 chr15 2944718 2944744 -82751010 - L1MC3 LINE L1 -4849 1196 1172 698 159 0 0 chr15 2944744 2944851 -82750903 - U6 snRNA snRNA 0 107 1 1866 233 72 39 chr15 2944851 2945586 -82750168 - L1MC3 LINE L1 -4873 1172 539 288 336 19 0 chr15 2945726 2945833 -82749921 - L1MC3 LINE L1 -5612 433 325 397 286 35 35 chr15 2945979 2946178 -82749576 + L1ME2 LINE L1 4967 5165 -981 1805 274 114 16 chr15 2946206 2947010 -82748744 + L1ME2 LINE L1 5281 6163 -1 3110 175 44 39 chr15 2949573 2949927 -82745827 - L1MC3 LINE L1 -31 7754 7392 1814 141 7 14 chr15 2949927 2950231 -82745523 - AluSx SINE Alu 0 304 3 3110 175 44 39 chr15 2950231 2950550 -82745204 - L1MC3 LINE L1 -393 7392 7076 2162 117 0 0 chr15 2950933 2951224 -82744530 + AluSx SINE Alu 1 291 -21 327 293 151 42 chr15 2951766 2952005 -82743749 - MLT1I LTR MaLR -19 390 126 1079 162 50 10 chr15 2952110 2952308 -82743446 - MLT1I-int LTR MaLR -170 1565 1360 341 229 20 27 chr15 2952304 2952416 -82743338 - L1MEc LINE L1 -4891 1690 1572 * 420 299 92 56 chr15 2954222 2954506 -82741248 - MLT1I LTR MaLR -18 391 98 245 244 89 22 chr15 2955767 2955857 -82739897 + MER114 LTR ERV 3 98 -550 21 0 0 0 chr15 2955866 2955887 -82739867 + AT_rich Low_complexity Low_complexity 1 21 0 325 224 53 118 chr15 2956106 2956258 -82739496 + L1ME2 LINE L1 1235 1525 -4891 * 1784 199 50 8 chr15 2956254 2956615 -82739139 + MLT1A1-int LTR MaLR 1360 1735 0 1128 247 117 6 chr15 2956620 2956944 -82738810 + MLT1A1 LTR MaLR 6 365 0 445 331 53 34 chr15 2957040 2957360 -82738394 + L1ME2 LINE L1 2069 2394 -4213 1135 250 117 27 chr15 2957683 2958318 -82737436 + L1ME2 LINE L1 4661 5352 -1074 1281 202 98 12 chr15 2958656 2958983 -82736771 + L1ME2 LINE L1 6069 6423 -21 21 0 0 0 chr15 2959318 2959339 -82736415 + AT_rich Low_complexity Low_complexity 1 21 0 518 221 130 10 chr15 2959350 2959558 -82736196 - MER114 LTR ERV -274 374 142 591 287 66 25 chr15 2960289 2960533 -82735221 - MIR SINE MIR -8 254 1 499 275 8 0 chr15 2962117 2962237 -82733517 + L1MC4a LINE L1 6607 6727 -1081 804 120 0 0 chr15 2962287 2962395 -82733359 + AluSp/q SINE Alu 174 281 -32 294 50 0 0 chr15 2962395 2962435 -82733319 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 1250 189 22 76 chr15 2962435 2962790 -82732964 + L1MD3 LINE L1 6783 7118 -877 608 242 110 11 chr15 2962799 2962981 -82732773 - MLT1G LTR MaLR -72 518 319 2713 176 54 12 chr15 2962996 2963571 -82732183 + L1MD3 LINE L1 7397 7995 0 1027 227 78 34 chr15 2963576 2963933 -82731821 + L1ME1 LINE L1 5790 6162 -4 284 143 18 0 chr15 2963934 2963990 -82731764 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 733 277 170 63 chr15 2964027 2964855 -82730899 + L1MC4 LINE L1 7124 8040 -2 4071 170 28 66 chr15 2966205 2966664 -82729090 + L1MA7 LINE L1 4548 5023 -1268 1847 137 32 3 chr15 2966664 2966948 -82728806 + AluSx SINE Alu 1 292 -20 4071 170 28 66 chr15 2966948 2967088 -82728666 + L1MA7 LINE L1 5023 5167 -1124 2269 96 7 0 chr15 2967088 2967390 -82728364 + AluSg SINE Alu 1 304 -6 4071 170 28 66 chr15 2967390 2968614 -82727140 + L1MA7 LINE L1 5167 6291 0 2477 156 36 7 chr15 2969538 2969954 -82725800 - MSTA LTR MaLR 0 428 1 4060 117 93 127 chr15 2970037 2971462 -82724292 + pTR5 LTR ERV1 743 2438 0 358 276 48 9 chr15 2971562 2971667 -82724087 + MER5A DNA MER1_type 59 167 -22 286 205 167 0 chr15 2972281 2972359 -82723395 - MLT1J2 LTR MaLR -288 162 72 3093 46 0 6 chr15 2972732 2973074 -82722680 - L1PA3 LINE L1 0 6155 5814 2307 94 3 0 chr15 2973074 2973362 -82722392 + AluSp SINE Alu 1 289 -24 3093 46 0 6 chr15 2973362 2973385 -82722369 - L1PA3 LINE L1 -341 5814 5792 2216 133 6 14 chr15 2973385 2973719 -82722035 - L1PB1 LINE L1 -6 6145 5804 1326 203 45 19 chr15 2974159 2974500 -82721254 + L1MA8 LINE L1 5685 6256 -35 * 2261 192 46 2 chr15 2974460 2974919 -82720835 + L1PA16 LINE L1 5685 6163 -3 21 0 0 0 chr15 2974971 2974992 -82720762 + AT_rich Low_complexity Low_complexity 1 21 0 192 27 81 0 chr15 2976656 2976693 -82719061 + T-rich Low_complexity Low_complexity 2 41 0 358 244 70 13 chr15 2977342 2977498 -82718256 + MER104 DNA Tc2 15 179 -1 1629 183 3 14 chr15 2978995 2979285 -82716469 + AluJb SINE Alu 1 287 -25 629 177 0 0 chr15 2979508 2979604 -82716150 + AluJb SINE Alu 192 287 -25 438 114 0 0 chr15 2979607 2979677 -82716077 + (GGA)n Simple_repeat Simple_repeat 3 72 0 212 329 0 14 chr15 2979871 2980011 -82715743 + (TG)n Simple_repeat Simple_repeat 1 138 0 560 323 57 37 chr15 2980270 2980620 -82715134 + L1M4 LINE L1 4757 5113 -1033 314 322 17 9 chr15 2980748 2980863 -82714891 + MIR SINE MIR 140 255 -7 840 272 74 25 chr15 2980904 2981349 -82714405 - HsTC2 DNA Tc2 -23 1875 1233 993 194 43 8 chr15 2984081 2984339 -82711415 - L1MD3 LINE L1 -1 7994 7728 478 277 121 32 chr15 2984345 2984798 -82710956 - MLT1E LTR MaLR 0 593 30 596 190 16 0 chr15 2984829 2984950 -82710804 - L1MD3 LINE L1 -308 7687 7565 984 161 14 14 chr15 2984993 2985204 -82710550 + L1 LINE L1 4730 4940 -1206 * 1678 243 77 30 chr15 2985199 2985851 -82709903 - L1MC3 LINE L1 -86 6080 5882 1625 216 32 13 chr15 2985920 2986383 -82709371 - L1MC3 LINE L1 -1256 4890 4419 1780 127 71 4 chr15 2986383 2986651 -82709103 + AluSc SINE Alu 22 307 -2 1544 118 33 4 chr15 2986651 2986921 -82708833 - L1MA2 LINE L1 -136 7128 6851 4924 77 29 1 chr15 2986921 2987741 -82708013 - MER11D LTR ERVK 0 897 6 1560 129 0 0 chr15 2987745 2987993 -82707761 - L1MA2 LINE L1 -409 6856 6609 1784 185 52 54 chr15 2987993 2988496 -82707258 + L1 LINE L1 4871 5372 -774 2230 165 55 32 chr15 2988503 2988698 -82707056 - Tigger1 DNA MER2_type -1935 483 294 1781 178 0 13 chr15 2988698 2989007 -82706747 - AluSx SINE Alu -7 305 1 2230 165 55 32 chr15 2989007 2989283 -82706471 - Tigger1 DNA MER2_type -2124 294 1 3310 184 31 16 chr15 2989286 2990118 -82705636 - L1MA2 LINE L1 -657 6603 5747 2255 112 3 3 chr15 2990118 2990423 -82705331 - AluSp SINE Alu -8 305 1 3310 184 31 16 chr15 2990423 2990697 -82705057 - L1MA2 LINE L1 -1513 5747 5479 573 175 73 58 chr15 2990701 2990878 -82704876 - L1MA2 LINE L1 -3717 3389 3207 2519 47 3 0 chr15 2990878 2991177 -82704577 - AluY SINE Alu -11 300 1 573 175 73 58 chr15 2991177 2991205 -82704549 - L1MA2 LINE L1 -3899 3207 3181 336 195 0 61 chr15 2991211 2991293 -82704461 - L1MA2 LINE L1 -5143 1887 1811 1328 308 16 29 chr15 2991419 2991965 -82703789 - L1MA2 LINE L1 -6439 591 53 573 28 0 0 chr15 2991965 2992036 -82703718 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 24 67 0 0 chr15 2992036 2992081 -82703673 + AT_rich Low_complexity Low_complexity 1 45 0 1049 242 16 3 chr15 2992119 2992429 -82703325 - L1M4 LINE L1 -1747 4399 4086 638 217 0 0 chr15 2992533 2992662 -82703092 - AluJb SINE Alu 0 312 184 1260 130 10 0 chr15 2992919 2993111 -82702643 - AluSq SINE Alu -119 194 1 1876 197 33 38 chr15 2993113 2994311 -82701443 - L1MB1 LINE L1 -39 6129 4788 749 219 84 113 chr15 2994364 2994779 -82700975 - L1MD3 LINE L1 -1107 6888 6486 300 89 18 0 chr15 2996119 2996175 -82699579 - L1MB8 LINE L1 0 6178 6122 959 215 45 78 chr15 2996289 2996586 -82699168 - L1MB8 LINE L1 -25 6153 5848 2244 93 3 0 chr15 2996586 2996876 -82698878 + AluSg SINE Alu 1 291 -19 959 215 45 78 chr15 2996876 2996918 -82698836 - L1MB8 LINE L1 -330 5848 5826 1449 200 6 72 chr15 2996918 2997238 -82698516 - AluJb SINE Alu -13 299 1 959 215 45 78 chr15 2997238 2997297 -82698457 - L1MB8 LINE L1 -352 5826 5767 1337 227 42 62 chr15 2997402 2998001 -82697753 - L1M4 LINE L1 -2242 3904 3318 656 265 29 23 chr15 2998271 2998622 -82697132 - L1MCa LINE L1 -5711 334 2 715 230 22 0 chr15 2998624 2998802 -82696952 - L1MD3 LINE L1 -419 7576 7395 289 262 75 37 chr15 2998807 2998914 -82696840 - MLT1F1 LTR MaLR -456 111 1 562 298 21 0 chr15 2998920 2999111 -82696643 - L1MD3 LINE L1 -727 7268 7074 1992 112 10 10 chr15 2999171 2999466 -82696288 - AluY SINE Alu -16 295 1 1160 152 28 5 chr15 2999467 2999684 -82696070 - L1MB8 LINE L1 -479 5705 5484 3257 182 95 33 chr15 2999881 3000076 -82695678 - L1MB3 LINE L1 -1 6182 6000 1835 155 7 17 chr15 3000076 3000373 -82695381 - AluJo SINE Alu -18 294 1 3257 182 95 33 chr15 3000373 3000991 -82694763 - L1MB3 LINE L1 -183 6000 5319 248 160 13 27 chr15 3001109 3001184 -82694570 + L1ME1 LINE L1 5293 5366 -2629 2142 71 0 0 chr15 3001924 3002191 -82693563 - AluY SINE Alu -43 268 2 2398 125 17 3 chr15 3002421 3002780 -82692974 - THE1B LTR MaLR 0 364 1 1294 243 133 41 chr15 3002896 3003436 -82692318 - MLT1G LTR MaLR 0 590 1 4571 158 23 33 chr15 3003530 3004977 -82690777 - L1MA8 LINE L1 -5 6286 4855 322 294 33 39 chr15 3005615 3005768 -82689986 + MLT1I LTR MaLR 250 401 -8 318 50 0 0 chr15 3005890 3005930 -82689824 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 * 972 49 0 0 chr15 3005929 3006051 -82689703 + (TTTC)n Simple_repeat Simple_repeat 4 125 0 1879 137 6 29 chr15 3006086 3006400 -82689354 - AluSg SINE Alu -3 307 1 2019 119 11 0 chr15 3006648 3006926 -82688828 + AluSx SINE Alu 1 281 -31 227 241 21 21 chr15 3007099 3007240 -82688514 + (TTGTG)n Simple_repeat Simple_repeat 1 141 0 2532 56 10 3 chr15 3007745 3008049 -82687705 + AluY SINE Alu 1 306 -5 919 278 39 30 chr15 3008074 3008480 -82687274 + L1ME1 LINE L1 5550 5959 -207 432 0 0 0 chr15 3008826 3008874 -82686880 + (CA)n Simple_repeat Simple_repeat 2 49 0 1715 133 98 11 chr15 3009035 3009320 -82686434 - AluSx SINE Alu -2 310 1 270 0 0 0 chr15 3009329 3009359 -82686395 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 2477 183 17 17 chr15 3009470 3009996 -82685758 + L1PA16 LINE L1 5625 6150 -16 1103 222 19 12 chr15 3010014 3010338 -82685416 - L1MB3 LINE L1 -798 5348 5023 * 3486 129 5 7 chr15 3010311 3010907 -82684847 - L1P LINE L1 -849 5297 4703 1308 209 13 7 chr15 3010905 3011206 -82684548 - L1MB3 LINE L1 -1898 4248 3946 * 3867 172 7 12 chr15 3011259 3012008 -82683746 + L1PB4 LINE L1 5411 6155 -1 1102 265 21 9 chr15 3012010 3012148 -82683606 - L1MB8 LINE L1 -55 6123 5988 1688 169 14 3 chr15 3012148 3012310 -82683444 - AluSx SINE Alu -19 293 125 378 57 0 0 chr15 3012310 3012363 -82683391 + (TG)n Simple_repeat Simple_repeat 2 54 0 1688 169 14 3 chr15 3012363 3012490 -82683264 - AluSx SINE Alu -187 125 1 1102 265 21 9 chr15 3012490 3012728 -82683026 - L1MB8 LINE L1 -190 5988 5746 593 300 113 32 chr15 3013155 3013650 -82682104 + L1ME1 LINE L1 37 419 -5278 2429 90 0 6 chr15 3013650 3013962 -82681792 + AluSp SINE Alu 1 310 -3 593 300 113 32 chr15 3013962 3014289 -82681465 + L1ME1 LINE L1 419 718 -4979 2450 266 59 13 chr15 3014319 3015158 -82680596 + L1ME1 LINE L1 4270 5187 -1048 642 121 0 17 chr15 3015158 3015274 -82680480 - L1PA13 LINE L1 0 6163 6050 2450 266 59 13 chr15 3015274 3015800 -82679954 + L1ME1 LINE L1 5187 5687 -548 1131 256 66 5 chr15 3015807 3016218 -82679536 + L1ME1 LINE L1 5785 6220 -15 21 0 0 0 chr15 3016281 3016302 -82679452 + AT_rich Low_complexity Low_complexity 1 21 0 4920 167 119 7 chr15 3016303 3017823 -82677931 - L1MA6 LINE L1 -4 6296 4539 210 23 70 23 chr15 3017823 3017866 -82677888 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 4920 167 119 7 chr15 3017866 3018098 -82677656 - L1MA6 LINE L1 -1761 4539 4334 698 117 55 6 chr15 3020179 3020342 -82675412 + GA-rich Low_complexity Low_complexity 2 172 0 970 270 62 75 chr15 3021160 3021786 -82673968 + L1ME LINE L1 78 695 -5375 22 0 0 0 chr15 3022088 3022110 -82673644 + AT_rich Low_complexity Low_complexity 1 22 0 226 98 39 0 chr15 3022331 3022382 -82673372 + (TG)n Simple_repeat Simple_repeat 2 54 0 453 224 28 7 chr15 3022497 3022640 -82673114 - L1ME3A LINE L1 -31 6139 5994 263 298 53 57 chr15 3023407 3023635 -82672119 - L2 LINE L2 -1285 2029 1803 374 313 144 23 chr15 3025945 3026201 -82669553 - L1MC4a LINE L1 -1962 5846 5560 522 303 117 36 chr15 3026791 3027433 -82668321 - L2 LINE L2 0 3313 2579 1461 183 14 21 chr15 3028043 3028328 -82667426 + AluJo SINE Alu 20 302 -10 383 229 92 0 chr15 3029299 3029408 -82666346 + MER5A DNA MER1_type 52 170 -19 460 346 79 31 chr15 3029979 3030398 -82665356 - L2 LINE L2 -678 2636 2198 807 34 61 0 chr15 3030841 3030989 -82664765 + (TA)n Simple_repeat Simple_repeat 2 158 0 251 187 243 37 chr15 3031033 3031140 -82664614 - MLT1H LTR MaLR -9 540 412 270 347 100 20 chr15 3031512 3031763 -82663991 - L2 LINE L2 -1185 2129 1859 317 244 49 0 chr15 3032670 3032752 -82663002 - L1MC4 LINE L1 -16 8026 7941 1778 251 153 6 chr15 3032873 3033658 -82662096 - L1MC4 LINE L1 -144 7898 6999 442 211 28 20 chr15 3033655 3034283 -82661471 - L1MC3 LINE L1 0 7785 6139 * 239 273 34 0 chr15 3034283 3034371 -82661383 - MLT1F1 LTR MaLR -442 125 35 260 169 15 15 chr15 3034395 3034460 -82661294 - L1MC4a LINE L1 -930 6878 6814 2368 50 3 0 chr15 3035608 3035891 -82659863 - AluY SINE Alu -24 287 4 264 232 12 0 chr15 3036065 3036147 -82659607 + (TA)n Simple_repeat Simple_repeat 1 83 0 2044 115 3 7 chr15 3036443 3036738 -82659016 + AluSq SINE Alu 1 294 -19 216 324 81 37 chr15 3039290 3039426 -82656328 - MIR SINE MIR -110 152 11 263 281 52 72 chr15 3039481 3039787 -82655967 - L1ME LINE L1 -279 5842 5543 198 351 0 0 chr15 3040564 3040638 -82655116 + MIR SINE MIR 188 261 -1 313 188 12 12 chr15 3041316 3041396 -82654358 - L1MD3 LINE L1 -86 7909 7830 587 72 0 0 chr15 3041396 3041479 -82654275 - Alu SINE Alu -6 303 221 5255 101 95 1 chr15 3041606 3042361 -82653393 + LTR12 LTR ERV1 1 826 0 2267 85 0 13 chr15 3042397 3042702 -82653052 - AluY SINE Alu -10 301 1 1840 283 107 26 chr15 3042872 3043932 -82651822 - L1MEc LINE L1 -5138 1258 114 2199 194 33 5 chr15 3044449 3044898 -82650856 + L1PA15 LINE L1 5704 6165 0 337 196 41 0 chr15 3046995 3047092 -82648662 - L1MCa LINE L1 -3024 3402 3302 881 196 41 21 chr15 3047094 3047411 -82648343 - L1MCa LINE L1 -3963 2463 2247 779 198 211 0 chr15 3047429 3047676 -82648078 + L1MCa LINE L1 1921 2219 -4207 624 260 51 23 chr15 3047676 3047989 -82647765 - MLT1E LTR MaLR -248 345 1 398 230 25 93 chr15 3047993 3048078 -82647676 - L1MD3 LINE L1 -282 7713 7643 2171 93 0 10 chr15 3048078 3048368 -82647386 - AluY SINE Alu -11 300 14 398 230 25 93 chr15 3048368 3048443 -82647311 - L1MD3 LINE L1 -352 7643 7564 3955 220 101 75 chr15 3048636 3048857 -82646897 - L1MC2 LINE L1 -3 7770 7556 1772 141 0 4 chr15 3048857 3049126 -82646628 - AluY SINE Alu -13 298 31 3955 220 101 75 chr15 3049126 3049356 -82646398 - L1MC2 LINE L1 -217 7556 7334 3719 113 143 2 chr15 3049356 3049959 -82645795 - LTR12 LTR ERV1 0 688 1 3955 220 101 75 chr15 3049959 3050136 -82645618 - L1MC2 LINE L1 -439 7334 7163 2171 110 3 3 chr15 3050136 3050437 -82645317 + AluY SINE Alu 1 301 -10 3955 220 101 75 chr15 3050437 3051461 -82644293 - L1MC2 LINE L1 -610 7163 6097 2358 85 10 0 chr15 3051461 3051756 -82643998 + AluSx SINE Alu 1 298 -14 3955 220 101 75 chr15 3051756 3052007 -82643747 - L1MC2 LINE L1 -1676 6097 5854 3621 215 52 32 chr15 3052007 3053382 -82642372 - L1MC2 LINE L1 -720 5454 4044 782 232 29 79 chr15 3053451 3053708 -82642046 - L1MC2 LINE L1 -2302 3844 3607 185 0 40 0 chr15 3053708 3053733 -82642021 + (TTG)n Simple_repeat Simple_repeat 2 27 0 782 232 29 79 chr15 3053733 3053815 -82641939 - L1MC2 LINE L1 -2539 3607 3522 352 241 46 8 chr15 3053817 3054004 -82641750 + MLT1E LTR MaLR 346 585 -8 830 202 51 20 chr15 3054007 3054260 -82641494 + L1MD3 LINE L1 7721 7981 -14 1490 190 64 39 chr15 3056223 3056613 -82639141 - MSTB1 LTR MaLR 0 432 33 2327 87 3 22 chr15 3056614 3056925 -82638829 - AluSp SINE Alu -8 305 1 2588 214 33 48 chr15 3056926 3057015 -82638739 + MER54A LTR ERVL 188 277 -624 2147 137 0 6 chr15 3057015 3057328 -82638426 - AluSx SINE Alu -1 311 1 2588 214 33 48 chr15 3057328 3057963 -82637791 + MER54A LTR ERVL 277 901 0 2198 96 3 3 chr15 3058074 3058367 -82637387 + AluSc SINE Alu 1 293 -16 627 290 69 35 chr15 3058578 3059030 -82636724 + HsTC2 DNA Tc2 1233 1875 -23 2086 105 54 0 chr15 3059344 3059638 -82636116 + AluSx SINE Alu 1 310 -2 482 262 142 21 chr15 3059690 3059857 -82635897 - L1M4 LINE L1 -1125 5021 4817 333 0 0 0 chr15 3059857 3059894 -82635860 + (TG)n Simple_repeat Simple_repeat 2 38 0 482 262 142 21 chr15 3059894 3059959 -82635795 - L1M4 LINE L1 -1329 4817 4761 884 191 7 0 chr15 3061756 3061903 -82633851 - FRAM SINE Alu -30 146 1 2145 100 0 33 chr15 3062794 3063095 -82632659 - AluSc SINE Alu -18 291 1 464 316 82 9 chr15 3063296 3063527 -82632227 - L1MEc LINE L1 -6083 313 66 2232 91 10 0 chr15 3063698 3063995 -82631759 + AluSx SINE Alu 1 300 -12 1385 104 79 5 chr15 3064343 3064545 -82631209 - AluSc SINE Alu -12 297 81 266 252 117 27 chr15 3064568 3064679 -82631075 - HsTC2 DNA Tc2 -546 1352 1232 221 197 26 40 chr15 3065778 3065854 -82629900 + L2 LINE L2 2427 2501 -813 2073 81 34 10 chr15 3066306 3066652 -82629102 - AluSq SINE Alu 0 353 1 528 89 125 54 chr15 3066751 3066863 -82628891 - AluSc SINE Alu 0 309 190 930 101 0 0 chr15 3066863 3066982 -82628772 - AluSq SINE Alu -159 154 36 962 291 42 13 chr15 3067313 3067856 -82627898 - L1M4 LINE L1 -3204 2942 2384 487 192 96 25 chr15 3067904 3068102 -82627652 + L1MCa LINE L1 2008 2219 -4207 353 295 180 25 chr15 3068104 3068304 -82627450 - MLT1E LTR MaLR -250 343 113 6666 19 0 0 chr15 3068326 3069125 -82626629 - L1PA3 LINE L1 0 6155 5357 319 255 9 38 chr15 3069126 3069232 -82626522 - MLT1E LTR MaLR -487 106 4 668 189 26 46 chr15 3069238 3069391 -82626363 - L1MD3 LINE L1 -281 7714 7565 1785 74 0 41 chr15 3069583 3069827 -82625927 - AluY SINE Alu -6 305 72 5028 232 91 34 chr15 3069875 3071743 -82624011 - L1MC2 LINE L1 0 7772 5835 269 188 12 75 chr15 3071724 3071767 -82623987 - L1MC2 LINE L1 -788 5454 5417 * 2037 202 34 7 chr15 3071767 3072182 -82623572 - MSTB LTR MaLR 0 426 1 269 188 12 75 chr15 3072182 3072218 -82623536 - L1MC2 LINE L1 -825 5417 5380 * 1084 241 69 11 chr15 3072213 3072590 -82623164 - L1MC2 LINE L1 -1008 5138 4740 467 118 0 0 chr15 3072590 3072658 -82623096 - AluJ/FLAM SINE Alu -217 95 28 542 179 9 127 chr15 3072662 3072891 -82622863 - L1MC2 LINE L1 -1446 4700 4499 888 177 0 0 chr15 3072920 3073061 -82622693 - FRAM SINE Alu -35 141 1 22 0 0 0 chr15 3073069 3073091 -82622663 + AT_rich Low_complexity Low_complexity 1 22 0 3980 137 46 29 chr15 3073148 3073909 -82621845 - LTR1 LTR ERV1 -11 774 1 736 235 20 44 chr15 3073912 3074163 -82621591 - L1MC2 LINE L1 -2383 3763 3519 392 220 53 53 chr15 3074213 3074363 -82621391 + MLT1E LTR MaLR 475 593 0 969 221 27 8 chr15 3074365 3074627 -82621127 + L1MD3 LINE L1 7724 7990 -5 2224 103 20 0 chr15 3075266 3075566 -82620188 + AluSg SINE Alu 1 306 -4 1635 129 20 106 chr15 3077335 3077470 -82618284 + AluYb8 SINE Alu 1 146 -172 2017 105 51 10 chr15 3077470 3077764 -82617990 + AluSc SINE Alu 1 306 -3 1635 129 20 106 chr15 3077764 3077969 -82617785 + AluYb8 SINE Alu 146 312 -6 4329 198 38 8 chr15 3077984 3078859 -82616895 + MER54A LTR ERVL 1 901 0 273 321 36 0 chr15 3079075 3079187 -82616567 + HsTC2 DNA Tc2 35 150 -1748 * 611 293 75 35 chr15 3079186 3079637 -82616117 + HsTC2 DNA Tc2 1231 1875 -23 317 358 137 4 chr15 3079674 3079900 -82615854 - MIR SINE MIR 0 262 7 277 262 158 32 chr15 3080011 3080232 -82615522 - L1M4 LINE L1 -1125 5021 4773 29 0 0 0 chr15 3082239 3082268 -82613486 + AT_rich Low_complexity Low_complexity 1 29 0 393 315 108 22 chr15 3083039 3083271 -82612483 - L1MEc LINE L1 -6083 313 62 282 305 99 21 chr15 3084219 3084360 -82611394 - MIR SINE MIR -1 261 110 2067 158 3 0 chr15 3084388 3084691 -82611063 - AluSx SINE Alu -8 304 1 223 200 143 76 chr15 3084698 3084803 -82610951 + MER5B DNA MER1_type 5 116 -62 1641 79 0 10 chr15 3084976 3085178 -82610576 - AluSq SINE Alu -113 200 1 200 287 196 28 chr15 3085734 3085877 -82609877 - MIR3 SINE MIR -35 173 7 348 133 33 0 chr15 3086068 3086128 -82609626 + MLT1C LTR MaLR 1 62 -405 2290 163 59 2 chr15 3086555 3086960 -82608794 + MSTA LTR MaLR 1 428 0 433 248 32 6 chr15 3087079 3087236 -82608518 + L2 LINE L2 2429 2589 -725 2094 93 4 0 chr15 3087339 3087617 -82608137 - AluSx SINE Alu -33 279 1 1137 239 64 18 chr15 3088378 3088888 -82606866 + L1MC4 LINE L1 4915 5454 -720 2197 104 10 0 chr15 3088890 3089179 -82606575 - AluSp SINE Alu -21 292 1 442 173 0 39 chr15 3089183 3089287 -82606467 + L1MC4 LINE L1 5854 5953 -2089 1991 213 82 16 chr15 3089409 3089876 -82605878 - L1MC3 LINE L1 -74 7711 7199 2800 7 0 0 chr15 3089876 3090178 -82605576 + AluYa5 SINE Alu 1 302 -9 1991 213 82 16 chr15 3090178 3090273 -82605481 - L1MC3 LINE L1 -586 7199 7112 530 182 0 9 chr15 3090286 3090396 -82605358 - L1PB3 LINE L1 -14 6140 6032 1565 156 154 96 chr15 3090396 3090940 -82604814 + LTR12 LTR ERV1 1 576 -138 348 215 25 0 chr15 3090940 3091019 -82604735 - L1PB3 LINE L1 -114 6040 5960 754 127 32 0 chr15 3091171 3091297 -82604457 - L1PB3 LINE L1 -207 5947 5818 1272 300 24 20 chr15 3091530 3092277 -82603477 - L1M4 LINE L1 -3022 3124 2375 305 200 56 11 chr15 3092290 3092380 -82603374 + L1MCa LINE L1 2101 2194 -4232 26 82 0 0 chr15 3092380 3092441 -82603313 + AT_rich Low_complexity Low_complexity 1 61 0 4148 127 40 19 chr15 3092442 3092499 -82603255 - L1PA14 LINE L1 -24 6137 6083 2064 153 80 30 chr15 3092499 3092938 -82602816 - LOR1b LTR ERV1 0 461 1 4148 127 40 19 chr15 3092938 3093631 -82602123 - L1PA14 LINE L1 -78 6083 5371 664 71 36 0 chr15 3093622 3093734 -82602020 - L1P4 LINE L1 -672 5489 5374 * 3742 144 16 21 chr15 3093729 3094587 -82601167 - L1P4 LINE L1 -673 5488 4638 2191 92 7 10 chr15 3094587 3094880 -82600874 + AluY SINE Alu 1 292 -19 3742 144 16 21 chr15 3094880 3094962 -82600792 - L1P4 LINE L1 -1523 4638 4557 379 287 0 29 chr15 3095168 3095304 -82600450 - MLT1E LTR MaLR -461 132 1 398 193 35 35 chr15 3095311 3095425 -82600329 - L1MD3 LINE L1 -285 7710 7597 1864 89 8 4 chr15 3095693 3095974 -82599780 + AluY SINE Alu 35 316 0 2064 133 3 0 chr15 3096074 3096359 -82599395 + AluSx SINE Alu 5 290 -22 580 229 3 129 chr15 3096359 3096577 -82599177 - L1MCa LINE L1 -3390 3036 2867 2280 104 0 3 chr15 3096577 3096875 -82598879 - AluSg SINE Alu -13 297 1 580 229 3 129 chr15 3096875 3096966 -82598788 - L1MCa LINE L1 -3559 2867 2766 2365 95 0 0 chr15 3096977 3097273 -82598481 - AluSx SINE Alu -16 296 1 261 261 95 46 chr15 3097466 3097707 -82598047 - L1 LINE L1 -1127 5019 4767 218 281 0 0 chr15 3097722 3097779 -82597975 - MIR SINE MIR -205 57 1 1690 200 0 7 chr15 3097844 3098144 -82597610 - AluJb SINE Alu -14 298 1 2183 118 3 3 chr15 3098394 3098698 -82597056 + AluSc SINE Alu 1 304 -5 957 228 38 29 chr15 3098798 3098919 -82596835 - L1MCa LINE L1 -3907 2700 2582 531 140 75 9 chr15 3098919 3099026 -82596728 - L1MA3 LINE L1 0 6305 6192 957 228 38 29 chr15 3099026 3099344 -82596410 - L1MCa LINE L1 -4025 2582 2223 1181 183 3 45 chr15 3099350 3099661 -82596093 + L1MCa LINE L1 1921 2218 -4208 2415 86 0 0 chr15 3100022 3100325 -82595429 + AluY SINE Alu 1 303 -8 259 206 55 14 chr15 3100326 3100399 -82595355 - L1MD3 LINE L1 -355 7640 7565 3967 239 61 72 chr15 3100644 3102542 -82593212 - L1MC3 LINE L1 -14 8051 6173 2365 112 3 0 chr15 3102542 3102854 -82592900 - AluSp SINE Alu 0 313 1 3967 239 61 72 chr15 3102854 3102894 -82592860 - L1MC3 LINE L1 -1892 6173 6134 1527 194 3 48 chr15 3102904 3103218 -82592536 + AluJo SINE Alu 1 300 -12 1792 237 65 20 chr15 3103230 3103351 -82592403 - L1MC3 LINE L1 -732 5722 5608 2292 90 3 0 chr15 3103351 3103639 -82592115 - AluSg SINE Alu -17 293 5 1792 237 65 20 chr15 3103639 3104298 -82591456 - L1MC3 LINE L1 -846 5608 4896 1979 260 35 41 chr15 3104311 3105172 -82590582 - L1MC3 LINE L1 -1772 4654 3799 348 246 18 2 chr15 3105173 3105353 -82590401 + MLT1F1 LTR MaLR 349 567 0 838 213 31 39 chr15 3105361 3105568 -82590186 + L1MD3 LINE L1 7731 7937 -58 2140 127 0 25 chr15 3105568 3105884 -82589870 - AluSx SINE Alu -4 308 1 838 213 31 39 chr15 3105884 3105930 -82589824 + L1MD3 LINE L1 7937 7982 -13 230 21 62 21 chr15 3105959 3106007 -82589747 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 2382 97 0 7 chr15 3106416 3106726 -82589028 - AluSq SINE Alu -5 308 1 1890 164 3 6 chr15 3107049 3107360 -82588394 + AluJo SINE Alu 1 310 -2 2269 154 28 42 chr15 3108634 3109015 -82586739 + MSTA LTR MaLR 1 377 -51 2376 86 7 0 chr15 3109015 3109317 -82586437 - AluSg SINE Alu -6 304 1 2269 154 28 42 chr15 3109317 3109369 -82586385 + MSTA LTR MaLR 377 428 0 2150 122 3 0 chr15 3109627 3109931 -82585823 - AluSx SINE Alu -7 305 1 3805 221 18 18 chr15 3109933 3110819 -82584935 + MER54A LTR ERVL 16 901 0 576 186 16 32 chr15 3113752 3113940 -82581814 - L1MA7 LINE L1 -6 6285 6101 1773 243 46 35 chr15 3114155 3115323 -82580431 - L1MC3 LINE L1 -2994 3432 2255 2135 166 32 12 chr15 3115363 3115774 -82579980 + MSTB1 LTR MaLR 1 419 -13 2459 76 0 0 chr15 3115823 3116126 -82579628 + AluY SINE Alu 1 303 -8 794 215 89 7 chr15 3116126 3116391 -82579363 + L1MCa LINE L1 1935 2221 -4205 433 323 165 25 chr15 3116408 3116693 -82579061 - MLT1E LTR MaLR -268 325 1 601 210 14 0 chr15 3116696 3116839 -82578915 - L1MD3 LINE L1 -281 7714 7570 964 196 11 6 chr15 3117119 3117298 -82578456 + AluJb SINE Alu 130 309 -3 4818 229 86 41 chr15 3117311 3118021 -82577733 - L1MC3 LINE L1 -25 8040 7364 1991 119 14 11 chr15 3118021 3118330 -82577424 - AluSc SINE Alu 0 312 3 4818 229 86 41 chr15 3118330 3119264 -82576490 - L1MC3 LINE L1 -701 7364 6301 2575 58 0 10 chr15 3119264 3119577 -82576177 + AluY SINE Alu 1 310 -1 4818 229 86 41 chr15 3119577 3119754 -82576000 - L1MC3 LINE L1 -1764 6301 6134 1835 254 59 33 chr15 3119755 3120425 -82575329 - L1MC3 LINE L1 -721 5733 5028 1558 194 3 40 chr15 3120425 3120618 -82575136 - AluJo SINE Alu 0 312 134 2219 113 3 0 chr15 3120618 3120918 -82574836 - AluSx SINE Alu -11 301 1 1558 194 3 40 chr15 3120918 3121048 -82574706 - AluJo SINE Alu -178 134 1 1835 254 59 33 chr15 3121048 3121363 -82574391 - L1MC3 LINE L1 -1426 5028 4723 852 299 131 18 chr15 3121367 3122033 -82573721 - L1MC3 LINE L1 -1799 4627 3887 443 187 47 19 chr15 3122117 3122305 -82573449 + MLT1E LTR MaLR 355 593 0 758 220 47 8 chr15 3122313 3122549 -82573205 + L1MD3 LINE L1 7731 7975 -20 2408 85 0 0 chr15 3122923 3123217 -82572537 + AluY SINE Alu 1 294 -17 941 163 69 82 chr15 3123590 3124053 -82571701 + THE1C LTR MaLR 1 375 0 1788 131 64 0 chr15 3124736 3125003 -82570751 + AluSx SINE Alu 1 307 0 208 0 0 0 chr15 3125003 3125026 -82570728 + (TAAA)n Simple_repeat Simple_repeat 2 140 0 1194 175 9 22 chr15 3125919 3126148 -82569606 - L1PA15 LINE L1 0 6165 5940 2429 62 10 10 chr15 3126237 3126545 -82569209 - AluY SINE Alu -3 308 1 505 236 124 42 chr15 3126779 3127038 -82568716 + HsTC2 DNA Tc2 1233 1688 -210 1379 214 45 3 chr15 3127604 3127894 -82567860 - AluJb SINE Alu -10 302 1 2261 78 23 13 chr15 3127971 3128279 -82567475 + AluY SINE Alu 1 311 0 403 329 92 12 chr15 3128605 3128845 -82566909 - L1MEc LINE L1 -6046 350 92 2354 90 10 0 chr15 3129063 3129364 -82566390 + AluSp SINE Alu 1 304 -9 656 217 73 62 chr15 3130412 3130719 -82565035 - L1MC3 LINE L1 -3942 2665 2294 2256 88 0 3 chr15 3130719 3131038 -82564716 - AluSg SINE Alu 0 318 1 656 217 73 62 chr15 3131038 3131133 -82564621 - L1MC3 LINE L1 -4313 2294 2201 * 1418 162 0 29 chr15 3131129 3131437 -82564317 + L1MCa LINE L1 1921 2219 -4207 677 253 115 48 chr15 3131437 3131749 -82564005 - MLT1E LTR MaLR -248 345 13 325 311 121 0 chr15 3131763 3131895 -82563859 - L1MD3 LINE L1 -282 7713 7566 3895 294 106 38 chr15 3132149 3133886 -82561868 - L1MC3 LINE L1 -11 7774 5837 2273 84 3 53 chr15 3133886 3134209 -82561545 - AluSq SINE Alu -6 307 1 3895 294 106 38 chr15 3134209 3134805 -82560949 - L1MC3 LINE L1 -1948 5837 5283 198 0 0 0 chr15 3135091 3135113 -82560641 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 555 157 0 0 chr15 3135118 3135201 -82560553 - AluSc SINE Alu -21 288 206 303 75 0 0 chr15 3135201 3135241 -82560513 - Alu SINE Alu -268 40 1 411 113 0 0 chr15 3135250 3135312 -82560442 + (TG)n Simple_repeat Simple_repeat 1 62 0 2136 75 0 4 chr15 3135312 3135593 -82560161 - AluY SINE Alu -31 280 1 2363 74 0 0 chr15 3135863 3136161 -82559593 - AluY SINE Alu -13 298 1 390 234 73 92 chr15 3136348 3136566 -82559188 - L1MCa LINE L1 -3759 2667 2454 302 78 0 59 chr15 3136570 3136621 -82559133 - MER75 DNA T2_type -4 500 453 651 202 52 19 chr15 3136643 3136856 -82558898 - L1MCa LINE L1 -3969 2457 2238 781 211 40 46 chr15 3136862 3137166 -82558588 + L1MCa LINE L1 1918 2219 -4207 337 136 11 80 chr15 3137166 3137254 -82558500 - MLT1F1 LTR MaLR -233 334 253 309 284 55 37 chr15 3137342 3137451 -82558303 - MLT1F1 LTR MaLR -482 111 1 497 230 6 67 chr15 3137455 3137620 -82558134 - L1MD3 LINE L1 -282 7713 7559 3094 260 96 47 chr15 3137832 3139477 -82556277 - L1MC3 LINE L1 -6 7779 6033 1600 209 3 0 chr15 3139477 3139773 -82555981 - AluSx SINE Alu -15 297 1 3094 260 96 47 chr15 3139773 3139963 -82555791 - L1MC3 LINE L1 -1752 6033 5854 994 257 62 30 chr15 3139963 3140153 -82555601 - L1MC3 LINE L1 -720 5454 5272 2208 110 0 10 chr15 3140153 3140461 -82555293 + AluSc SINE Alu 4 308 -1 994 257 62 30 chr15 3140461 3140916 -82554838 - L1MC3 LINE L1 -902 5272 4781 * 1379 237 36 14 chr15 3140913 3141419 -82554335 - L1MC3 LINE L1 -2111 4035 3519 260 281 24 0 chr15 3141421 3141503 -82554251 + MLT1E LTR MaLR 350 433 -160 900 190 79 8 chr15 3141607 3141860 -82553894 + L1MD3 LINE L1 7724 7994 -1 2318 81 3 10 chr15 3142199 3142497 -82553257 + AluSc SINE Alu 1 296 -13 1013 270 61 10 chr15 3142711 3143107 -82552647 - L1MC3 LINE L1 -1504 6281 5866 808 228 58 83 chr15 3143177 3143616 -82552138 - MER66A LTR ERV1 -3 475 97 2008 262 66 32 chr15 3143716 3144347 -82551407 - L1MC3 LINE L1 -748 5398 4707 2004 119 13 50 chr15 3144347 3144665 -82551089 - AluSx SINE Alu -6 306 1 2008 262 66 32 chr15 3144665 3145209 -82550545 - L1MC3 LINE L1 -1439 4707 4183 2439 79 0 13 chr15 3145234 3145549 -82550205 - AluY SINE Alu 0 311 1 656 251 55 34 chr15 3145557 3145940 -82549814 - L1MC3 LINE L1 -2190 3956 3566 371 241 131 8 chr15 3145982 3146168 -82549586 + MLT1E LTR MaLR 418 593 0 467 258 38 22 chr15 3146170 3146437 -82549317 + L1MD3 LINE L1 7724 7994 -1 2196 108 0 10 chr15 3147344 3147639 -82548115 - AluY SINE Alu -15 296 5 1398 207 0 39 chr15 3147655 3147960 -82547794 - AluJo SINE Alu -19 293 1 606 265 35 5 chr15 3147962 3148162 -82547592 - L1MC3 LINE L1 -506 7279 7074 1449 291 39 39 chr15 3148176 3148449 -82547305 - L1M4 LINE L1 -1458 4688 4416 1750 118 0 8 chr15 3148449 3148694 -82547060 - AluSg SINE Alu -19 291 49 1449 291 39 39 chr15 3148694 3148789 -82546965 - L1M4 LINE L1 -1730 4416 4322 1684 157 78 28 chr15 3148789 3149146 -82546608 - THE1C LTR MaLR 0 375 1 1449 291 39 39 chr15 3149146 3149945 -82545809 - L1M4 LINE L1 -1823 4323 3520 373 249 296 6 chr15 3149953 3150122 -82545632 + MLT1E LTR MaLR 376 593 0 755 212 45 12 chr15 3150130 3150375 -82545379 + L1MD3 LINE L1 7731 7983 -12 1779 84 88 29 chr15 3150516 3150789 -82544965 - AluSg SINE Alu -21 289 1 687 239 7 0 chr15 3151022 3151211 -82544543 + FAM SINE Alu 1 56 0 1503 255 39 37 chr15 3151418 3151928 -82543826 + MER54A LTR ERVL 19 529 -372 185 160 0 20 chr15 3151974 3152024 -82543730 + (TAGA)n Simple_repeat Simple_repeat 3 51 0 1100 266 34 87 chr15 3152054 3152122 -82543632 - MLT2B3 LTR ERVL -54 500 430 2206 92 4 0 chr15 3152122 3152425 -82543329 - AluY SINE Alu 0 304 1 1100 266 34 87 chr15 3152425 3152882 -82542872 - MLT2B3 LTR ERVL -124 430 2 2475 201 54 2 chr15 3152885 3153463 -82542291 - ERVL-B3 LTR ERVL -20 5744 5137 1508 230 34 37 chr15 3153465 3153874 -82541880 - MSTC LTR MaLR 0 428 21 403 231 66 8 chr15 3153878 3153999 -82541755 - MSTC-int LTR MaLR -1 1734 1607 2419 230 8 69 chr15 3154061 3154788 -82540966 - LTR8 LTR ERV1 -8 683 1 962 258 39 13 chr15 3154791 3155097 -82540657 - HUERS-P1 LTR ERV1 -4 6259 5946 861 252 71 17 chr15 3155202 3155496 -82540258 - PRIMA41-int LTR ERV1 -105 6226 5917 5642 159 51 117 chr15 3155533 3156541 -82539213 - PRIMA41-int LTR ERV1 -299 5422 4350 1950 115 7 17 chr15 3156541 3156828 -82538926 - AluSc SINE Alu -25 284 1 5642 159 51 117 chr15 3156828 3157107 -82538647 - PRIMA41-int LTR ERV1 -1371 4350 4054 1488 180 29 67 chr15 3157107 3157282 -82538472 - AluJb SINE Alu -5 307 148 2213 112 0 3 chr15 3157282 3157576 -82538178 - AluSp SINE Alu -14 299 7 1488 180 29 67 chr15 3157576 3157716 -82538038 - AluJb SINE Alu -164 148 4 5642 159 51 117 chr15 3157716 3158351 -82537403 - PRIMA41-int LTR ERV1 -1667 4054 3729 765 195 124 28 chr15 3158365 3158647 -82537107 - LTR15 LTR ERV1 -18 475 167 3289 197 64 33 chr15 3158835 3159086 -82536668 - PRIMA41-int LTR ERV1 -1588 3292 3050 2389 86 23 0 chr15 3159086 3159388 -82536366 + AluY SINE Alu 1 309 -2 3289 197 64 33 chr15 3159388 3160148 -82535606 - PRIMA41-int LTR ERV1 -1830 3050 1210 1499 237 91 45 chr15 3160173 3160691 -82535063 - PRIMA41-int LTR ERV1 -5442 2095 366 1434 215 75 70 chr15 3160692 3161249 -82534505 - PRIMA41-int LTR ERV1 -5242 1021 462 575 288 0 12 chr15 3161403 3161566 -82534188 - PRIMA41-int LTR ERV1 -6062 201 41 1892 234 11 104 chr15 3161591 3162353 -82533401 - LTR8 LTR ERV1 0 691 1 2102 275 78 64 chr15 3162355 3163327 -82532427 - MSTC-int LTR MaLR -210 1441 449 372 22 0 0 chr15 3163327 3163372 -82532382 + (TG)n Simple_repeat Simple_repeat 2 46 0 2102 275 78 64 chr15 3163372 3163549 -82532205 - MSTC-int LTR MaLR -1202 449 276 7567 21 15 0 chr15 3163553 3164565 -82531189 - L1PA3 LINE L1 0 6155 5136 2620 19 0 0 chr15 3164565 3164887 -82530867 + L1PA3 LINE L1 4817 5138 -1008 709 250 123 35 chr15 3164880 3164936 -82530818 - MSTC-int LTR MaLR -1390 345 295 * 3748 122 80 5 chr15 3164936 3165535 -82530219 - LTR9B LTR ERV1 0 644 1 709 250 123 35 chr15 3165535 3165794 -82529960 - MSTC-int LTR MaLR -1440 295 2 763 193 9 71 chr15 3165796 3166006 -82529748 - MSTC LTR MaLR 0 428 232 1457 182 60 54 chr15 3166006 3166357 -82529397 - LTR10B LTR ERV1 0 547 195 892 179 49 27 chr15 3166481 3166704 -82529050 - MSTC LTR MaLR -193 235 8 775 164 42 12 chr15 3166709 3166874 -82528880 - ERVL-B3 LTR ERVL -624 5140 4971 * 6373 231 22 20 chr15 3166870 3168434 -82527320 - ERVL-B3 LTR ERVL -946 4818 3252 275 353 0 0 chr15 3169330 3169466 -82526288 - PRIMA41-int LTR ERV1 -499 4455 4320 467 339 14 42 chr15 3171228 3171450 -82524304 - PRIMA41-int LTR ERV1 -1990 5766 5539 1963 131 14 0 chr15 3171450 3171740 -82524014 - AluSg SINE Alu -16 294 1 2356 98 0 19 chr15 3171745 3172052 -82523702 - AluSg SINE Alu -9 301 1 467 339 14 42 chr15 3172052 3172254 -82523500 - PRIMA41-int LTR ERV1 -2221 5535 5348 9039 228 49 6 chr15 3172790 3175502 -82520252 - ERVL-B3 LTR ERVL -2905 2859 20 1924 239 35 44 chr15 3175534 3175943 -82519811 - MLT2B3 LTR ERVL -12 542 138 4086 163 23 40 chr15 3175943 3176213 -82519541 - LTR39 LTR ERV1 0 783 510 2233 121 0 0 chr15 3176213 3176519 -82519235 - AluSg SINE Alu -4 306 1 4086 163 23 40 chr15 3176519 3177045 -82518709 - LTR39 LTR ERV1 -273 510 1 1924 239 35 44 chr15 3177045 3177182 -82518572 - MLT2B3 LTR ERVL -416 138 1 1256 264 39 6 chr15 3177182 3177546 -82518208 + MER54A LTR ERVL 522 897 -4 278 343 86 0 chr15 3177736 3177876 -82517878 + HsTC2 DNA Tc2 2 153 -1745 296 264 187 25 chr15 3177965 3178094 -82517660 + HsTC2 DNA Tc2 1508 1615 -283 2051 123 33 41 chr15 3178094 3178459 -82517295 - THE1B LTR MaLR -2 362 1 296 264 187 25 chr15 3178459 3178644 -82517110 + HsTC2 DNA Tc2 1615 1873 -25 801 204 96 119 chr15 3178715 3179186 -82516568 - MER4C LTR ERV1 0 465 6 6241 169 50 43 chr15 3179187 3181028 -82514726 - MER4C-int LTR ERV1 -8 6590 4290 6999 30 1 1 chr15 3181032 3181905 -82513849 - L1PA4 LINE L1 -5 6150 5278 5660 40 0 0 chr15 3181905 3182625 -82513129 + L1P LINE L1 4309 5028 -1118 1091 145 52 76 chr15 3182625 3182914 -82512840 - MER83A-int LTR ERV1 -3404 4716 4435 647 168 0 0 chr15 3182917 3183018 -82512736 + AluJ/FLAM SINE Alu 1 101 -211 2273 141 71 2 chr15 3183019 3183415 -82512339 - MER83A-int LTR ERV1 -1415 5676 5254 2192 59 33 52 chr15 3184922 3185229 -82510525 - AluY SINE Alu -10 301 1 186 226 81 16 chr15 3185970 3186032 -82509722 + MER5B DNA MER1_type 113 178 0 2089 138 6 13 chr15 3187430 3187742 -82508012 + AluSx SINE Alu 1 310 -2 2361 28 0 0 chr15 3189146 3189430 -82506324 - L1PA3 LINE L1 -413 5742 5459 3472 31 12 0 chr15 3189430 3189842 -82505912 + L1PA3 LINE L1 5738 6155 0 1216 234 12 8 chr15 3189850 3190098 -82505656 - AluJo SINE Alu -30 282 34 546 206 5 98 chr15 3190390 3190574 -82505180 - MER83A-int LTR ERV1 -4168 3952 3786 271 269 46 46 chr15 3190708 3190838 -82504916 - MER83A-int LTR ERV1 -3494 4626 4497 434 195 131 56 chr15 3190845 3191112 -82504642 - MER83A-int LTR ERV1 -2581 4017 3731 1433 154 24 14 chr15 3191201 3192361 -82503393 + L1P LINE L1 2843 4164 -1982 671 244 22 39 chr15 3192434 3192479 -82503275 - MLT2B3 LTR ERVL 0 554 510 258 116 0 0 chr15 3192479 3192522 -82503232 + (TAGG)n Simple_repeat Simple_repeat 1 43 0 671 244 22 39 chr15 3192522 3192706 -82503048 - MLT2B3 LTR ERVL -44 510 329 436 326 51 37 chr15 3192795 3193169 -82502585 - L1MC3 LINE L1 -945 6840 6462 555 173 9 0 chr15 3193207 3193317 -82502437 - Tigger4(Zombi) DNA MER2_type 0 2731 2621 1078 192 78 117 chr15 3193318 3193730 -82502024 - MER83 LTR ERV1 -7 441 46 354 90 45 30 chr15 3193727 3193794 -82501960 - MER83 LTR ERV1 -344 104 37 * 2047 162 17 0 chr15 3193799 3194144 -82501610 - MER83-int LTR ERV1 -44 4241 3891 1951 133 57 17 chr15 3194135 3194489 -82501265 - MER83-int LTR ERV1 -1244 3041 2674 * 399 167 0 13 chr15 3194501 3194579 -82501175 - MER83-int LTR ERV1 -258 6073 5997 5000 187 72 37 chr15 3194749 3196073 -82499681 - MER83A-int LTR ERV1 -547 5399 4059 3134 155 97 6 chr15 3196064 3196703 -82499051 - MER83A-int LTR ERV1 -1818 3062 2366 * 589 136 17 102 chr15 3196805 3196850 -82498904 - MER83A-int LTR ERV1 -2492 2388 2341 2174 107 0 7 chr15 3196850 3197149 -82498605 - AluY SINE Alu -14 297 1 589 136 17 102 chr15 3197149 3197280 -82498474 - MER83A-int LTR ERV1 -2539 2341 2227 * 2399 168 58 32 chr15 3197278 3198184 -82497570 - MER83A-int LTR ERV1 -193 1932 1075 3418 181 63 35 chr15 3198202 3199246 -82496508 - MER83A-int LTR ERV1 -3725 1155 9 1143 164 82 108 chr15 3199257 3199635 -82496119 - MER83 LTR ERV1 -27 421 54 451 163 10 10 chr15 3199641 3199739 -82496015 - MER83 LTR ERV1 -344 104 7 34 0 0 0 chr15 3199769 3199803 -82495951 + AT_rich Low_complexity Low_complexity 1 34 0 707 153 44 0 chr15 3199841 3199978 -82495776 - Tigger4(Zombi) DNA MER2_type -134 2597 2455 2203 102 7 0 chr15 3199993 3200297 -82495457 - AluSq SINE Alu -7 306 1 2821 190 134 8 chr15 3200297 3201050 -82494704 + Tigger3(Golem) DNA MER2_type 2181 3028 -1 1753 131 67 25 chr15 3201060 3201420 -82494334 - MER51B LTR ERV1 -2 375 1 606 207 25 0 chr15 3201421 3201542 -82494212 - MER51B-int LTR ERV1 0 7816 7693 363 229 11 78 chr15 3201765 3201944 -82493810 - MER51A-int LTR ERV1 -6987 829 663 281 208 0 13 chr15 3202029 3202106 -82493648 - MER51A-int LTR ERV1 -3067 2519 2444 * 1499 194 50 124 chr15 3202105 3202702 -82493052 - MER51A-int LTR ERV1 -7263 553 1 1437 143 56 44 chr15 3202702 3203023 -82492731 - MER51A LTR ERV1 0 634 310 231 185 231 0 chr15 3203038 3203103 -82492651 - MER51A LTR ERV1 -554 80 1 796 174 64 0 chr15 3203108 3203280 -82492474 - Tigger4(Zombi) DNA MER2_type -485 2246 2064 1016 273 55 42 chr15 3203315 3203562 -82492192 - L1MC3 LINE L1 -1377 6408 6166 2290 85 0 0 chr15 3203562 3203890 -82491864 - AluY SINE Alu 0 328 1 1016 273 55 42 chr15 3203890 3204183 -82491571 - L1MC3 LINE L1 -1619 6166 5860 543 214 51 56 chr15 3204197 3204634 -82491120 - L1M4 LINE L1 -734 5444 5003 3945 137 56 19 chr15 3204669 3205841 -82489913 + L1PA11 LINE L1 4824 6045 -129 5721 183 20 4 chr15 3205843 3206979 -82488775 + PRIMA41-int LTR ERV1 2740 3893 -3863 2150 112 7 3 chr15 3207070 3207365 -82488389 + AluY SINE Alu 1 296 -15 278 313 98 0 chr15 3208254 3208366 -82487388 - MER83A-int LTR ERV1 -971 815 693 1114 296 35 23 chr15 3208662 3209057 -82486697 - MER83A-int LTR ERV1 -1343 443 44 773 259 58 88 chr15 3209063 3209515 -82486239 - LTR38B LTR ERV1 -55 555 118 677 110 0 0 chr15 3209568 3209668 -82486086 + L1PA11 LINE L1 6008 6107 -67 312 213 33 17 chr15 3209755 3209926 -82485828 - MLT1E LTR MaLR -15 578 346 349 296 43 0 chr15 3261733 3261848 -82433906 + HsTC2 DNA Tc2 35 154 -1744 * 689 274 31 57 chr15 3261845 3262326 -82433428 + HsTC2 DNA Tc2 1233 1873 -25 355 333 49 27 chr15 3262596 3262821 -82432933 - L1M4 LINE L1 -1034 5112 4883 1283 241 0 10 chr15 3262954 3263257 -82432497 - AluJo SINE Alu -12 300 1 564 222 11 103 chr15 3264333 3264518 -82431236 - MER83A-int LTR ERV1 -4167 3953 3786 1037 220 20 27 chr15 3264606 3265040 -82430714 - MER83A-int LTR ERV1 -2148 4183 3731 5084 179 76 78 chr15 3265078 3266972 -82428782 - MER83A-int LTR ERV1 -2869 3729 682 1496 204 28 29 chr15 3266961 3267524 -82428230 - MER83A-int LTR ERV1 -2351 1934 1317 * 2427 177 60 11 chr15 3268594 3269452 -82426302 - L1P5 LINE L1 -479 5675 4767 903 302 73 72 chr15 3269463 3270650 -82425104 - L1PA15-16 LINE L1 -5685 1165 1 2459 248 98 55 chr15 3270668 3271179 -82424575 - L1MC3 LINE L1 -659 7195 6708 240 59 0 0 chr15 3271179 3271213 -82424541 + (CA)n Simple_repeat Simple_repeat 1 34 0 2459 248 98 55 chr15 3271213 3271921 -82423833 - L1MC3 LINE L1 -1146 6708 5923 1331 253 40 22 chr15 3271921 3272591 -82423163 - L1MC3 LINE L1 -720 5523 4846 1225 264 35 31 chr15 3272606 3273118 -82422636 - L1MC3 LINE L1 -2105 4110 3597 281 288 18 54 chr15 3273122 3273233 -82422521 + MLT1E LTR MaLR 341 447 -146 415 259 164 9 chr15 3273315 3273535 -82422219 + L1MD3 LINE L1 7733 7986 -9 400 277 130 30 chr15 3274856 3275087 -82420667 - L1MC3 LINE L1 -6051 345 92 386 284 22 0 chr15 3275206 3275340 -82420414 - L1MD3 LINE L1 -288 7707 7571 1079 163 0 0 chr15 3275442 3275602 -82420152 + AluSx SINE Alu 1 160 -152 1080 275 65 2 chr15 3275607 3276072 -82419682 - L1M4 LINE L1 -872 5274 4781 * 1093 254 86 11 chr15 3276070 3276547 -82419207 - L1M4 LINE L1 -2115 4031 3519 343 238 12 0 chr15 3276548 3276628 -82419126 + MLT1E LTR MaLR 349 429 -164 1051 183 53 0 chr15 3276729 3276975 -82418779 + L1MD3 LINE L1 7724 7982 -13 2206 146 25 3 chr15 3277592 3277948 -82417806 - THE1B LTR MaLR 0 364 1 1646 209 6 3 chr15 3279781 3280116 -82415638 + MER54A LTR ERVL 24 359 -542 674 203 14 0 chr15 3280175 3280318 -82415436 - L1MD3 LINE L1 -282 7713 7569 813 221 42 8 chr15 3280548 3280810 -82414944 - L1MC3 LINE L1 -4 7781 7511 411 319 59 28 chr15 3281168 3281422 -82414332 - LTR38B-int LTR ERV1 -1412 374 113 479 262 87 42 chr15 3281486 3282004 -82413750 - LTR38B LTR ERV1 0 611 64 394 299 109 0 chr15 3282689 3282873 -82412881 - L1MEc LINE L1 -6078 318 115 601 180 44 16 chr15 3283366 3283549 -82412205 - L1MCa LINE L1 -3996 2430 2243 295 132 0 0 chr15 3283565 3283633 -82412121 + L1MCa LINE L1 1921 1988 -4438 447 224 39 75 chr15 3283654 3283674 -82412080 + L1MCa LINE L1 1974 1993 -4433 1975 130 3 23 chr15 3283674 3283974 -82411780 + AluSx SINE Alu 2 295 -17 447 224 39 75 chr15 3283974 3284208 -82411546 + L1MCa LINE L1 1993 2219 -4207 282 291 97 24 chr15 3284270 3284435 -82411319 - MLT1E LTR MaLR -333 260 84 239 229 220 18 chr15 3284519 3284628 -82411126 - L1MC4 LINE L1 -421 7621 7491 21 0 0 0 chr15 3284759 3284780 -82410974 + AT_rich Low_complexity Low_complexity 1 21 0 39 0 0 0 chr15 3284873 3284912 -82410842 + AT_rich Low_complexity Low_complexity 1 39 0 968 205 111 3 chr15 3284913 3285201 -82410553 - L1MC3 LINE L1 -19 7766 7448 962 258 18 40 chr15 3285207 3285337 -82410417 - L1MC3 LINE L1 -384 7401 7270 1885 151 6 26 chr15 3285337 3285649 -82410105 - AluJo SINE Alu -6 306 1 962 258 18 40 chr15 3285649 3285844 -82409910 - L1MC3 LINE L1 -515 7270 7083 1285 285 66 46 chr15 3285862 3286738 -82409016 - L1M4 LINE L1 -1453 4693 3787 180 0 0 0 chr15 3286738 3286758 -82408996 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1285 285 66 46 chr15 3286758 3287032 -82408722 - L1M4 LINE L1 -2359 3787 3520 395 208 52 7 chr15 3287073 3287208 -82408546 + MLT1E LTR MaLR 422 593 0 667 256 24 12 chr15 3287215 3287465 -82408289 + L1MD3 LINE L1 7731 7983 -12 22 0 0 0 chr15 3287555 3287577 -82408177 + AT_rich Low_complexity Low_complexity 1 22 0 349 269 15 15 chr15 3287825 3287955 -82407799 + L1ME1 LINE L1 6011 6140 -26 610 242 6 38 chr15 3288022 3288179 -82407575 + FAM SINE Alu 3 154 -31 471 35 0 0 chr15 3288181 3288238 -82407516 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 2356 77 0 3 chr15 3288295 3288593 -82407161 - AluY SINE Alu -14 297 1 1840 244 32 25 chr15 3288719 3289244 -82406510 + MER54A LTR ERVL 1 529 -372 249 139 0 0 chr15 3289282 3289325 -82406429 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 1626 230 28 83 chr15 3289333 3289898 -82405856 - MLT2B3 LTR ERVL -20 534 1 2603 209 16 5 chr15 3289898 3290509 -82405245 - ERVL-B3 LTR ERVL -7 5757 5140 1770 214 33 33 chr15 3290512 3290938 -82404816 - MSTC LTR MaLR 0 428 3 2343 231 20 52 chr15 3291125 3291814 -82403940 - LTR8 LTR ERV1 -9 682 16 1148 261 19 13 chr15 3291850 3292161 -82403593 - HUERS-P1 LTR ERV1 -5 6258 5946 6845 189 65 74 chr15 3292266 3293517 -82402237 - MER41-int LTR ERV1 -105 6226 4965 2361 77 7 3 chr15 3293517 3293827 -82401927 + AluY SINE Alu 1 311 0 6845 189 65 74 chr15 3293827 3294180 -82401574 - MER41-int LTR ERV1 -1366 4965 4610 1548 193 18 11 chr15 3294180 3294465 -82401289 - AluJo SINE Alu -23 289 3 6845 189 65 74 chr15 3294465 3296371 -82399383 - MER41-int LTR ERV1 -1721 4610 1816 1064 235 89 89 chr15 3296431 3296924 -82398830 - MER41-int LTR ERV1 -4114 3423 2931 2554 223 33 27 chr15 3296939 3297793 -82397961 - MER41-int LTR ERV1 -2594 2286 1280 894 218 66 9 chr15 3297793 3298134 -82397620 - LTR8 LTR ERV1 -364 363 1 899 284 61 78 chr15 3298134 3298665 -82397089 - MSTC-int LTR MaLR -221 1430 923 413 155 0 0 chr15 3298679 3298763 -82396991 + MSTC LTR MaLR 345 428 0 460 222 5 123 chr15 3298763 3298966 -82396788 + MSTC-int LTR MaLR 1 179 -1472 3012 217 11 10 chr15 3298968 3299669 -82396085 - ERVL-B3 LTR ERVL -1001 4763 4062 3216 265 82 12 chr15 3299875 3301094 -82394660 - ERVL-B3 LTR ERVL -4369 1285 10 1738 226 49 55 chr15 3301113 3301525 -82394229 - MLT2B3 LTR ERVL -8 546 136 4177 179 21 8 chr15 3301525 3302298 -82393456 - LTR39 LTR ERV1 0 783 1 1738 226 49 55 chr15 3302298 3302434 -82393320 - MLT2B3 LTR ERVL -418 136 1 1159 249 49 12 chr15 3302449 3302795 -82392959 + MER54A LTR ERVL 538 896 -5 395 273 106 48 chr15 3303123 3303450 -82392304 + HsTC2 DNA Tc2 1236 1543 -355 4766 51 10 0 chr15 3303450 3304035 -82391719 + LTR10C LTR ERV1 1 591 0 395 273 106 48 chr15 3304035 3304145 -82391609 + HsTC2 DNA Tc2 1543 1874 -24 545 215 81 6 chr15 3304225 3304397 -82391357 - MER4C LTR ERV1 -1 464 280 388 223 58 6 chr15 3304456 3304679 -82391075 - MER4C LTR ERV1 -196 269 6 7667 182 46 60 chr15 3304680 3306832 -82388922 - MER4C-int LTR ERV1 -8 6590 4091 1630 196 7 17 chr15 3306832 3307133 -82388621 + AluJb SINE Alu 1 298 -14 7667 182 46 60 chr15 3307133 3307639 -82388115 - MER4C-int LTR ERV1 -2507 4091 3579 1430 206 61 80 chr15 3307644 3307675 -82388079 - MER4C-int LTR ERV1 -1863 3017 2987 1581 211 0 20 chr15 3307675 3307969 -82387785 - AluJo SINE Alu -18 294 7 1430 206 61 80 chr15 3307969 3308525 -82387229 - MER4C-int LTR ERV1 -1893 2987 2441 398 122 27 0 chr15 3308527 3308601 -82387153 - L1PA15 LINE L1 -16 6149 6074 314 204 122 10 chr15 3308732 3308830 -82386924 - MER4C-int LTR ERV1 -5232 1099 991 316 49 0 0 chr15 3308840 3308881 -82386873 - MER4C-int LTR ERV1 -4793 1153 1113 457 209 23 16 chr15 3309067 3309196 -82386558 - MER4C-int LTR ERV1 -6356 242 113 1026 202 72 118 chr15 3309291 3309776 -82385978 - MER4C LTR ERV1 0 465 3 461 324 89 22 chr15 3310001 3310273 -82385481 - L1M4 LINE L1 -1050 5376 5077 2056 135 10 19 chr15 3310273 3310459 -82385295 - AluSg SINE Alu -2 308 125 207 0 0 0 chr15 3310459 3310482 -82385272 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2056 135 10 19 chr15 3310482 3310606 -82385148 - AluSg SINE Alu -185 125 1 461 324 89 22 chr15 3310606 3310657 -82385097 - L1M4 LINE L1 -1349 5077 5031 1114 235 78 35 chr15 3310804 3311229 -82384525 + LTR47B LTR ERVL 1 443 0 292 260 20 20 chr15 3312301 3312401 -82383353 + HERVL18 LTR ERVL 1225 1324 -4723 357 356 24 0 chr15 3313061 3313269 -82382485 + HERVL18 LTR ERVL 1852 2064 -3279 620 360 29 23 chr15 3313364 3313613 -82382141 + HERVL18 LTR ERVL 2312 2558 -2785 1952 169 0 13 chr15 3313613 3313927 -82381827 + AluSx SINE Alu 1 310 -2 620 360 29 23 chr15 3313927 3314366 -82381388 + HERVL18 LTR ERVL 2558 3004 -2339 999 251 34 17 chr15 3314560 3315179 -82380575 - L1MCa LINE L1 -3584 2842 2213 962 207 20 47 chr15 3315185 3315485 -82380269 + L1MCa LINE L1 1925 2216 -4210 386 297 157 13 chr15 3315493 3315722 -82380032 - MLT1E LTR MaLR -253 340 79 639 212 0 20 chr15 3315821 3315972 -82379782 - L1MD3 LINE L1 -283 7712 7565 1522 218 105 4 chr15 3316221 3316680 -82379074 - L1MC3 LINE L1 -6 7779 7275 5936 72 12 1 chr15 3316680 3317494 -82378260 - MER11B LTR ERVK -413 823 1 5978 199 32 56 chr15 3317506 3320213 -82375541 - L1MA1 LINE L1 -17 6285 3654 1403 205 6 75 chr15 3321175 3321497 -82374257 - AluJo SINE Alu -2 300 1 476 253 258 5 chr15 3321501 3321699 -82374055 + MLT1E LTR MaLR 346 593 0 793 225 29 16 chr15 3321726 3321970 -82373784 + L1MD3 LINE L1 7745 7991 -4 794 207 0 0 chr15 3321993 3322138 -82373616 + FRAM SINE Alu 13 157 -19 31 26 0 0 chr15 3322491 3322529 -82373225 + AT_rich Low_complexity Low_complexity 1 38 0 327 283 0 22 chr15 3322728 3322820 -82372934 + L1MC4 LINE L1 6614 6703 -1339 266 185 31 0 chr15 3322757 3322822 -82372932 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 * 339 300 0 0 chr15 3322822 3322912 -82372842 + L1MC4 LINE L1 6614 6703 -1339 1566 204 19 16 chr15 3323052 3323361 -82372393 + AluJb SINE Alu 3 312 0 254 140 0 20 chr15 3323380 3323430 -82372324 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 966 138 170 167 chr15 3324703 3325151 -82370603 - LTR47A LTR ERVL -2 450 2 895 253 38 112 chr15 3325312 3325971 -82369783 - LTR38B LTR ERV1 0 610 1 1525 306 53 38 chr15 3326168 3327320 -82368434 - LTR38B-int LTR ERV1 -251 7505 6337 1517 328 54 39 chr15 3327981 3329655 -82366099 - LTR38B-int LTR ERV1 -2913 4209 2511 277 273 45 0 chr15 3329870 3329958 -82365796 - LTR38B-int LTR ERV1 -4824 2298 2207 365 209 33 22 chr15 3330088 3330179 -82365575 - LTR38B-int LTR ERV1 -5045 2077 1986 627 325 18 24 chr15 3330672 3331004 -82364750 - LTR38B-int LTR ERV1 -5861 1261 932 287 339 58 0 chr15 3332191 3332312 -82363442 - LTR38B-int LTR ERV1 -971 815 688 782 304 38 46 chr15 3332563 3332958 -82362796 - LTR38B-int LTR ERV1 -1342 444 53 3516 104 10 45 chr15 3332979 3333584 -82362170 - L1PA13 LINE L1 -186 5977 5394 1105 188 8 0 chr15 3333581 3333815 -82361939 + L1P LINE L1 3265 3500 -2646 * 22 80 0 0 chr15 3333913 3333963 -82361791 + AT_rich Low_complexity Low_complexity 1 50 0 2753 182 66 5 chr15 3334257 3334860 -82360894 + LTR39 LTR ERV1 1 640 -143 1881 148 0 0 chr15 3334868 3335183 -82360571 - AluSq SINE Alu 0 315 1 618 212 7 22 chr15 3335183 3335320 -82360434 - AluJo SINE Alu -177 135 1 1374 90 0 0 chr15 3337042 3337220 -82358534 + AluSx SINE Alu 1 178 -134 299 271 69 62 chr15 3337250 3337738 -82358016 - LTR38B LTR ERV1 -65 545 1 243 88 0 0 chr15 3338148 3338182 -82357572 + (TG)n Simple_repeat Simple_repeat 2 35 0 1353 261 127 44 chr15 3338429 3339361 -82356393 - L1MC3 LINE L1 -913 6872 5864 583 261 51 5 chr15 3339372 3339734 -82356020 - L1MC3 LINE L1 -725 5453 5075 1669 176 168 8 chr15 3339786 3340155 -82355599 - MSTA LTR MaLR 0 428 1 5480 180 10 14 chr15 3340157 3341187 -82354567 - MSTA-int LTR MaLR -2 1578 553 1068 233 51 86 chr15 3341287 3341473 -82354281 - L1MC3 LINE L1 -472 7313 7122 2053 125 3 23 chr15 3341473 3341776 -82353978 + AluSx SINE Alu 1 297 -15 1068 233 51 86 chr15 3341776 3342122 -82353632 - L1MC3 LINE L1 -663 7122 6800 1754 258 32 5 chr15 3342251 3342816 -82352938 - L1MC3 LINE L1 -1352 6433 5854 1098 214 64 94 chr15 3342859 3343386 -82352368 - MER66A LTR ERV1 0 478 97 308 291 29 0 chr15 3343400 3343572 -82352182 - L1MC3 LINE L1 -748 5398 5222 3830 121 11 10 chr15 3343574 3344193 -82351561 - L1PA13 LINE L1 -6 6157 5538 2008 279 92 70 chr15 3344202 3346091 -82349663 - L1PA13 LINE L1 -707 5461 3528 320 191 36 12 chr15 3346186 3346270 -82349484 + MLT1E LTR MaLR 493 578 -15 786 212 48 8 chr15 3346284 3346534 -82349220 + L1MD3 LINE L1 7721 7980 -15 23 0 0 0 chr15 3346543 3346566 -82349188 + AT_rich Low_complexity Low_complexity 1 23 0 225 376 26 0 chr15 3348352 3348469 -82347285 + HsTC2 DNA Tc2 35 154 -1744 * 613 248 71 44 chr15 3348466 3348760 -82346994 + HsTC2 DNA Tc2 1233 1710 -188 2802 182 28 39 chr15 3349300 3349336 -82346418 - MSTA-int LTR MaLR -1010 641 606 2365 74 0 7 chr15 3349336 3349632 -82346122 - AluY SINE Alu -17 294 1 2802 182 28 39 chr15 3349632 3349707 -82346047 - MSTA-int LTR MaLR -1045 606 532 2253 136 0 0 chr15 3349707 3350017 -82345737 - AluSg SINE Alu 0 310 1 2802 182 28 39 chr15 3350017 3350552 -82345202 - MSTA-int LTR MaLR -1119 532 1 1938 163 129 5 chr15 3350552 3350933 -82344821 - MSTA LTR MaLR 0 428 1 2325 277 60 27 chr15 3350941 3352370 -82343384 - L1MC3 LINE L1 -1152 4994 3519 356 253 24 0 chr15 3352373 3352456 -82343298 + MLT1E LTR MaLR 350 434 -159 831 92 8 0 chr15 3352846 3352966 -82342788 - AluSg/x SINE Alu -15 295 175 294 328 35 0 chr15 3353027 3353143 -82342611 + HsTC2 DNA Tc2 35 154 -1744 693 225 65 33 chr15 3353180 3353487 -82342267 + HsTC2 DNA Tc2 1281 1773 -125 541 316 128 6 chr15 3353915 3354235 -82341519 - L1M4 LINE L1 -1033 5393 5035 22 88 0 0 chr15 3355319 3355376 -82340378 + AT_rich Low_complexity Low_complexity 1 57 0 600 201 69 0 chr15 3357287 3357461 -82338293 - L1MA7 LINE L1 0 6291 6106 1949 267 37 11 chr15 3357704 3358861 -82336893 - L1MCa LINE L1 -3016 3410 2222 313 222 94 8 chr15 3358866 3358983 -82336771 + L1MCa LINE L1 1938 2064 -4362 550 227 70 0 chr15 3358997 3359169 -82336585 + L1MCa LINE L1 2008 2191 -4235 5653 116 3 15 chr15 3359202 3360047 -82335707 - L1PA14 LINE L1 -2 6159 5339 2104 128 0 0 chr15 3360047 3360344 -82335410 - AluY SINE Alu -12 299 3 5653 116 3 15 chr15 3360344 3361127 -82334627 - L1PA14 LINE L1 -822 5339 4549 495 246 116 30 chr15 3361225 3361457 -82334297 - MLT1E LTR MaLR -341 252 1 599 250 0 0 chr15 3361461 3361605 -82334149 - L1MD3 LINE L1 -282 7713 7570 282 29 0 0 chr15 3361828 3361863 -82333891 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2001 118 34 3 chr15 3361885 3362181 -82333573 + AluSx SINE Alu 1 305 -7 1665 232 101 15 chr15 3362201 3362796 -82332958 - L1MC3 LINE L1 -28 7757 7112 2413 172 45 4 chr15 3362819 3363166 -82332588 - L1PB3 LINE L1 -7 6147 5775 321 26 0 0 chr15 3363166 3363204 -82332550 + (CA)n Simple_repeat Simple_repeat 2 39 0 2413 172 45 4 chr15 3363204 3363321 -82332433 - L1PB3 LINE L1 -379 5775 5664 360 0 0 0 chr15 3363321 3363361 -82332393 + (TG)n Simple_repeat Simple_repeat 1 40 0 342 0 0 0 chr15 3363360 3363398 -82332356 + (GA)n Simple_repeat Simple_repeat 1 38 0 * 1592 179 18 0 chr15 3363398 3363671 -82332083 - AluSx SINE Alu -34 278 1 4021 125 1 19 chr15 3363678 3364326 -82331428 + LTR8 LTR ERV1 55 691 0 481 265 89 51 chr15 3364844 3365101 -82330653 - L1M4 LINE L1 -1127 5019 4753 1859 157 14 7 chr15 3365105 3365398 -82330356 - AluSx SINE Alu -17 295 1 1205 215 16 60 chr15 3365453 3365769 -82329985 - AluJo SINE Alu 0 302 1 22 0 0 0 chr15 3365895 3365917 -82329837 + AT_rich Low_complexity Low_complexity 1 22 0 1702 174 3 24 chr15 3365918 3366212 -82329542 - AluJb SINE Alu -24 288 1 29 28 0 0 chr15 3367381 3367417 -82328337 + AT_rich Low_complexity Low_complexity 1 36 0 780 188 71 67 chr15 3367420 3367675 -82328079 - MER4-int LTR ERV1 -127 6631 6376 595 216 57 18 chr15 3367644 3367821 -82327933 - MER4-int LTR ERV1 -593 6165 3950 * 1733 123 0 16 chr15 3367905 3368156 -82327598 + AluSc SINE Alu 45 291 -18 898 217 46 39 chr15 3368569 3368993 -82326761 - MER4-int LTR ERV1 -2138 4021 2474 739 168 41 38 chr15 3369076 3369353 -82326401 - MER4-int LTR ERV1 -2900 3698 2403 351 255 9 47 chr15 3369472 3369578 -82326176 + L1MC4 LINE L1 6614 6715 -1327 424 226 35 0 chr15 3370146 3370261 -82325493 + L1MCa LINE L1 2101 2219 -4207 423 282 153 16 chr15 3370261 3370509 -82325245 - MLT1E LTR MaLR -248 345 64 21 0 0 0 chr15 3370812 3370833 -82324921 + AT_rich Low_complexity Low_complexity 1 21 0 42 0 0 0 chr15 3370925 3370967 -82324787 + AT_rich Low_complexity Low_complexity 1 42 0 974 205 111 3 chr15 3370968 3371256 -82324498 - L1MC3 LINE L1 -19 7766 7448 580 221 15 60 chr15 3371262 3371392 -82324362 - L1MC3 LINE L1 -384 7401 7282 1704 182 3 23 chr15 3371392 3371699 -82324055 - AluJo SINE Alu -11 301 1 580 221 15 60 chr15 3371699 3371767 -82323987 - L1MC3 LINE L1 -503 7282 7212 6352 119 24 44 chr15 3371767 3372975 -82322779 - MER11C LTR ERVK 0 1071 1 329 315 23 8 chr15 3372976 3373106 -82322648 - L1MC3 LINE L1 -571 7214 7083 1089 281 64 53 chr15 3373124 3374286 -82321468 - L1M4 LINE L1 -1453 4693 3520 455 214 304 6 chr15 3374294 3374462 -82321292 + MLT1E LTR MaLR 376 593 0 730 240 24 12 chr15 3374470 3374720 -82321034 + L1MD3 LINE L1 7731 7983 -12 667 237 29 35 chr15 3375081 3375254 -82320500 + FAM SINE Alu 3 174 -1 2066 128 0 3 chr15 3375315 3375613 -82320141 - AluY SINE Alu -14 297 1 1734 247 36 25 chr15 3375739 3376262 -82319492 + MER54A LTR ERVL 1 529 -372 1622 259 38 30 chr15 3376346 3376876 -82318878 - MLT2B3 LTR ERVL -20 534 1 2512 206 14 26 chr15 3376876 3377293 -82318461 - ERVL-B3 LTR ERVL -7 5757 5337 186 118 0 0 chr15 3377293 3377327 -82318427 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2279 81 3 0 chr15 3377330 3377615 -82318139 - AluY SINE Alu -25 286 1 2512 206 14 26 chr15 3377615 3377818 -82317936 - ERVL-B3 LTR ERVL -429 5335 5140 1778 216 31 33 chr15 3377822 3378247 -82317507 - MSTC LTR MaLR -2 426 3 238 308 67 0 chr15 3378250 3378370 -82317384 - MSTC-int LTR MaLR -1 1734 1607 2360 232 19 52 chr15 3378433 3379123 -82316631 - LTR8 LTR ERV1 -9 682 16 1094 291 19 6 chr15 3379156 3379472 -82316282 - HUERS-P1 LTR ERV1 0 6263 5944 865 210 179 14 chr15 3379551 3379841 -82315913 - PRIMA41-int LTR ERV1 -57 6274 5937 9334 179 40 89 chr15 3380012 3380990 -82314764 - PRIMA41-int LTR ERV1 -524 5422 4398 207 0 0 0 chr15 3380990 3381013 -82314741 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 9334 179 40 89 chr15 3381013 3381169 -82314585 - PRIMA41-int LTR ERV1 -1548 4398 4236 1595 202 11 11 chr15 3381169 3381456 -82314298 - AluJo SINE Alu -23 289 3 9334 179 40 89 chr15 3381456 3383340 -82312414 - PRIMA41-int LTR ERV1 -1710 4236 1816 1000 261 77 54 chr15 3383400 3383882 -82311872 - PRIMA41-int LTR ERV1 -4114 3423 2931 2543 223 33 27 chr15 3383897 3384751 -82311003 - PRIMA41-int LTR ERV1 -2594 2286 1280 946 211 150 85 chr15 3384751 3385092 -82310662 - LTR8 LTR ERV1 -364 363 1 838 297 55 72 chr15 3385092 3385622 -82310132 - MSTC-int LTR MaLR -221 1430 923 376 179 0 0 chr15 3385636 3385720 -82310034 + MSTC LTR MaLR 345 428 0 428 231 10 128 chr15 3385720 3385923 -82309831 + MSTC-int LTR MaLR 1 179 -1472 3110 215 13 7 chr15 3385925 3386623 -82309131 - ERVL-B3 LTR ERVL -1001 4763 4062 484 292 26 17 chr15 3386634 3386815 -82308939 - PRIMA41-int LTR ERV1 -1990 5766 5581 1933 116 0 77 chr15 3386815 3387142 -82308612 + AluSg SINE Alu 1 302 -8 484 292 26 17 chr15 3387142 3387193 -82308561 - PRIMA41-int LTR ERV1 -2175 5581 5532 9670 232 62 8 chr15 3387715 3390265 -82305489 - ERVL-B3 LTR ERVL -2904 2860 172 1892 219 46 48 chr15 3390428 3390838 -82304916 - MLT2B3 LTR ERVL -8 546 136 4185 176 22 7 chr15 3390838 3391609 -82304145 - LTR39 LTR ERV1 0 783 1 1892 219 46 48 chr15 3391609 3391745 -82304009 - MLT2B3 LTR ERVL -418 136 1 1259 236 50 11 chr15 3391745 3392105 -82303649 + MER54A LTR ERVL 523 896 -5 450 254 102 44 chr15 3392587 3392822 -82302932 + HsTC2 DNA Tc2 1507 1770 -128 4775 56 0 0 chr15 3392822 3393413 -82302341 + LTR10C LTR ERV1 1 591 0 450 254 102 44 chr15 3393413 3393519 -82302235 + HsTC2 DNA Tc2 1770 1868 -30 501 222 102 6 chr15 3393602 3393778 -82301976 - MER4C LTR ERV1 0 465 273 409 225 48 11 chr15 3393838 3394055 -82301699 - MER4A LTR ERV1 -203 262 6 7356 189 52 59 chr15 3394056 3396189 -82299565 - MER4A-int LTR ERV1 -8 6590 2831 1625 201 3 16 chr15 3396189 3396492 -82299262 + AluJb SINE Alu 1 299 -13 7356 189 52 59 chr15 3396492 3396999 -82298755 - MER4A-int LTR ERV1 -3767 2831 2322 1513 230 0 3 chr15 3397039 3397330 -82298424 - AluJo SINE Alu -22 290 1 1605 186 48 81 chr15 3397380 3397885 -82297869 - MER4C-int LTR ERV1 -1952 2928 2441 415 137 14 0 chr15 3397889 3397962 -82297792 - L1PA15 LINE L1 -18 6147 6074 363 184 122 10 chr15 3398093 3398191 -82297563 - MER4C-int LTR ERV1 -5232 1099 991 304 51 0 0 chr15 3398203 3398242 -82297512 - MER4C-int LTR ERV1 -5764 1773 1735 441 209 23 16 chr15 3398428 3398557 -82297197 - MER4C-int LTR ERV1 -6356 242 113 714 213 25 35 chr15 3398652 3399134 -82296620 - MER4C LTR ERV1 0 695 3 343 324 75 42 chr15 3399359 3399558 -82296196 - L1M4 LINE L1 -1050 5096 4882 2435 84 3 0 chr15 3399558 3399867 -82295887 + AluY SINE Alu 1 310 -1 343 324 75 42 chr15 3399867 3399973 -82295781 - L1M4 LINE L1 -1264 4882 4781 1743 118 95 0 chr15 3399976 3400128 -82295626 - AluSx SINE Alu -24 288 152 189 0 0 0 chr15 3400128 3400149 -82295605 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1743 118 95 0 chr15 3400149 3400259 -82295495 - AluSx SINE Alu -160 152 1 463 193 42 8 chr15 3400460 3400579 -82295175 + LTR47A LTR ERVL 1 123 -329 341 250 12 0 chr15 3400629 3400713 -82295041 + LTR47B LTR ERVL 359 443 0 310 234 0 0 chr15 3401643 3401720 -82294034 + LTR57-int LTR ERVL 1248 1324 -4723 390 326 34 8 chr15 3402343 3402600 -82293154 + LTR57-int LTR ERVL 1852 2086 -1332 521 361 22 26 chr15 3402698 3402947 -82292807 + LTR57-int LTR ERVL 2312 2561 -2782 1839 162 3 10 chr15 3402947 3403244 -82292510 + AluSq SINE Alu 1 295 -18 521 361 22 26 chr15 3403244 3403687 -82292067 + LTR57-int LTR ERVL 2561 3001 -2342 892 266 47 6 chr15 3403896 3404490 -82291264 - L1MCa LINE L1 -3595 2831 2213 1029 146 22 95 chr15 3404496 3404811 -82290943 + L1MCa LINE L1 1925 2216 -4210 410 282 124 71 chr15 3404819 3405142 -82290612 - MLT1E LTR MaLR -253 340 1 659 223 0 0 chr15 3405147 3405295 -82290459 - L1MD3 LINE L1 -283 7712 7565 28 29 0 0 chr15 3405301 3405336 -82290418 + AT_rich Low_complexity Low_complexity 1 35 0 4200 253 68 45 chr15 3405542 3406355 -82289399 - L1MC3 LINE L1 -6 7779 6986 2227 125 0 0 chr15 3406355 3406666 -82289088 - AluY SINE Alu 0 311 1 4200 253 68 45 chr15 3406666 3407447 -82288307 - L1MC3 LINE L1 -799 6986 6134 1814 157 3 26 chr15 3407447 3407759 -82287995 - AluSx SINE Alu -7 305 1 4200 253 68 45 chr15 3407759 3408037 -82287717 - L1MC3 LINE L1 -1651 6134 5864 559 251 36 5 chr15 3408047 3408380 -82287374 - L1MC3 LINE L1 -720 5454 5113 231 213 32 32 chr15 3408377 3408471 -82287283 - L1MC3 LINE L1 -987 5159 5066 * 2299 126 55 2 chr15 3408471 3408869 -82286885 - MSTA LTR MaLR 0 428 10 413 286 82 5 chr15 3408918 3409138 -82286616 - L1MC3 LINE L1 -1121 5025 4789 7069 96 4 19 chr15 3409180 3410253 -82285501 - MER11C LTR ERVK -14 1057 1 6217 201 31 54 chr15 3410265 3412968 -82282786 - L1MA1 LINE L1 -17 6285 3654 1437 198 3 75 chr15 3413926 3414245 -82281509 - AluJo SINE Alu -6 296 1 467 258 258 5 chr15 3414249 3414447 -82281307 + MLT1E LTR MaLR 346 593 0 800 214 30 17 chr15 3414474 3414708 -82281046 + L1MD3 LINE L1 7745 7981 -14 23 0 0 0 chr15 3414714 3414737 -82281017 + AT_rich Low_complexity Low_complexity 1 23 0 766 208 0 0 chr15 3414741 3414885 -82280869 + FRAM SINE Alu 13 156 -20 28 48 0 0 chr15 3415232 3415274 -82280480 + AT_rich Low_complexity Low_complexity 1 42 0 285 29 0 0 chr15 3415472 3415506 -82280248 + (TA)n Simple_repeat Simple_repeat 2 35 0 1543 202 0 4 chr15 3415640 3415917 -82279837 + AluJb SINE Alu 1 276 -36 316 198 12 12 chr15 3415917 3416003 -82279751 + GA-rich Low_complexity Low_complexity 3 88 0 272 301 0 0 chr15 3416799 3416882 -82278872 - MER66A-int LTR ERV1 -6387 735 653 273 333 0 0 chr15 3417603 3417693 -82278061 - MER66A-int LTR ERV1 -971 815 726 774 329 25 33 chr15 3417974 3418369 -82277385 - MER66A-int LTR ERV1 -1342 444 53 1544 81 8 8 chr15 3418390 3418626 -82277128 - L1PA12 LINE L1 -191 5977 5742 850 225 89 52 chr15 3418630 3418954 -82276800 - MER66A LTR ERV1 -46 432 97 3069 275 61 28 chr15 3419114 3420895 -82274859 - L1M4 LINE L1 -744 5402 3564 330 190 52 16 chr15 3420936 3421118 -82274636 + MLT1E LTR MaLR 350 593 0 681 230 34 19 chr15 3421120 3421385 -82274369 + L1MD3 LINE L1 7724 7992 -3 306 325 26 0 chr15 3423501 3423618 -82272136 + HsTC2 DNA Tc2 35 154 -1744 * 688 286 29 58 chr15 3423613 3424096 -82271658 + HsTC2 DNA Tc2 1231 1875 -23 348 353 31 9 chr15 3424366 3424590 -82271164 - L1M4 LINE L1 -1034 5112 4884 1318 240 0 13 chr15 3424724 3425028 -82270726 - AluJo SINE Alu -12 300 1 2848 7 0 0 chr15 3425480 3425788 -82269966 + AluY SINE Alu 1 308 -3 259 78 0 4 chr15 3427069 3427288 -82268466 + AluSx SINE Alu 1 300 0 * 284 301 65 63 chr15 3427285 3427774 -82267980 - LTR38 LTR ERV1 -66 490 1 22 35 0 0 chr15 3428042 3428071 -82267683 + AT_rich Low_complexity Low_complexity 1 29 0 312 27 0 0 chr15 3428182 3428219 -82267535 + (TG)n Simple_repeat Simple_repeat 2 38 0 2679 211 88 21 chr15 3428455 3429162 -82266592 - MER49 LTR ERV1 -169 754 1 1134 208 22 45 chr15 3429163 3429537 -82266217 - MER49-int LTR ERV1 -3 7093 6376 624 212 57 18 chr15 3429506 3429683 -82266071 - MER49-int LTR ERV1 -593 6165 3950 * 1682 106 16 8 chr15 3429767 3430012 -82265742 + AluSc SINE Alu 45 291 -18 261 174 0 151 chr15 3430244 3430330 -82265424 - MER49-int LTR ERV1 -4262 3858 3786 977 207 34 37 chr15 3430417 3430849 -82264905 - LTR49-int LTR ERV1 -2147 4184 3731 756 205 43 75 chr15 3430929 3431344 -82264410 - LTR49-int LTR ERV1 -2900 3698 3297 1662 280 4 6 chr15 3431348 3431827 -82263927 - ERVL-B3 LTR ERVL -3961 1803 1326 1001 187 6 11 chr15 3431831 3432013 -82263741 - AluSp SINE Alu -18 295 115 3296 264 45 20 chr15 3432120 3432321 -82263433 - ERVL-B3 LTR ERVL -4441 1252 1058 826 219 0 18 chr15 3432321 3432490 -82263264 - FRAM SINE Alu 0 166 1 3296 264 45 20 chr15 3432490 3433491 -82262263 - ERVL-B3 LTR ERVL -4635 1058 1 698 236 13 52 chr15 3433491 3433553 -82262201 - MLT2B3 LTR ERVL 0 554 491 315 0 0 0 chr15 3433553 3433588 -82262166 + (TAGA)n Simple_repeat Simple_repeat 1 35 0 698 236 13 52 chr15 3433588 3433754 -82262000 - MLT2B3 LTR ERVL -63 491 335 1539 249 123 40 chr15 3433834 3434775 -82260979 - L1MC3 LINE L1 -913 7152 6134 2575 271 70 24 chr15 3434776 3435182 -82260572 - L1MC3 LINE L1 -725 5733 5347 1569 188 169 5 chr15 3435182 3435550 -82260204 - MSTA LTR MaLR 0 428 1 8038 191 18 22 chr15 3435552 3436590 -82259164 - MSTA-int LTR MaLR -2 1649 608 183 42 0 0 chr15 3436590 3436614 -82259140 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2081 98 0 7 chr15 3436624 3436900 -82258854 - AluY SINE Alu -37 274 1 8038 191 18 22 chr15 3436900 3436967 -82258787 - MSTA-int LTR MaLR -1052 599 533 2283 118 3 0 chr15 3436967 3437271 -82258483 - AluSg SINE Alu 0 310 6 8038 191 18 22 chr15 3437271 3437810 -82257944 - MSTA-int LTR MaLR -1118 533 1 1864 144 155 11 chr15 3437810 3438184 -82257570 - MSTA LTR MaLR 0 428 1 2575 271 70 24 chr15 3438184 3439626 -82256128 - L1MC3 LINE L1 -1110 5348 3799 519 212 264 5 chr15 3439630 3439823 -82255931 + MLT1E LTR MaLR 351 593 0 722 233 29 10 chr15 3439829 3440035 -82255719 + L1MD3 LINE L1 7729 7938 -57 26 0 0 0 chr15 3440035 3440061 -82255693 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr15 3440089 3440113 -82255641 + AT_rich Low_complexity Low_complexity 1 24 0 1923 248 38 25 chr15 3442284 3443452 -82252302 - L1MC3 LINE L1 -3015 3411 2227 242 215 37 52 chr15 3443447 3443582 -82252172 + L1MCa LINE L1 1936 2068 -4358 * 542 220 45 11 chr15 3443574 3443751 -82252003 + L1MCa LINE L1 2008 2190 -4236 26 30 0 0 chr15 3443751 3443784 -82251970 + AT_rich Low_complexity Low_complexity 1 33 0 5400 116 5 16 chr15 3443788 3444625 -82251129 - L1PA14 LINE L1 -3 6158 5339 2083 100 3 7 chr15 3444625 3444915 -82250839 - AluSc SINE Alu -19 290 2 5400 116 5 16 chr15 3444915 3445699 -82250055 - L1PA14 LINE L1 -822 5339 4547 549 236 88 32 chr15 3445807 3446023 -82249731 - MLT1E LTR MaLR -365 228 1 618 210 3 0 chr15 3446028 3446171 -82249583 - L1MD3 LINE L1 -299 7696 7488 1893 146 36 3 chr15 3446443 3446745 -82249009 + AluSx SINE Alu 1 312 0 1753 240 102 7 chr15 3446762 3447349 -82248405 - L1MC3 LINE L1 -31 7754 7112 2084 153 57 5 chr15 3447372 3447718 -82248036 - L1PB3 LINE L1 -7 6147 5778 393 22 0 0 chr15 3447718 3447764 -82247990 + (CA)n Simple_repeat Simple_repeat 2 47 0 2084 153 57 5 chr15 3447764 3447803 -82247951 - L1PB3 LINE L1 -376 5778 5742 561 138 0 0 chr15 3447904 3447998 -82247756 - L1PB3 LINE L1 -397 5757 5664 378 0 0 0 chr15 3447998 3448040 -82247714 + (TG)n Simple_repeat Simple_repeat 1 42 0 269 129 6 0 chr15 3448056 3448104 -82247650 - Alu SINE Alu -20 282 242 839 283 72 37 chr15 3448141 3448947 -82246807 - L1M4 LINE L1 -1659 4487 3654 1249 195 6 114 chr15 3449903 3450236 -82245518 - AluJo SINE Alu -5 297 1 501 224 265 15 chr15 3450242 3450438 -82245316 + MLT1E LTR MaLR 349 593 0 832 205 30 17 chr15 3450465 3450699 -82245055 + L1MD3 LINE L1 7745 7981 -14 22 0 0 0 chr15 3450705 3450727 -82245027 + AT_rich Low_complexity Low_complexity 1 22 0 737 217 0 0 chr15 3450731 3450874 -82244880 + FRAM SINE Alu 13 155 -21 31 26 0 0 chr15 3451221 3451259 -82244495 + AT_rich Low_complexity Low_complexity 1 38 0 308 194 28 14 chr15 3451500 3451572 -82244182 + L1MCa LINE L1 1996 2068 -4358 195 184 0 0 chr15 3451574 3451612 -82244142 + (TATG)n Simple_repeat Simple_repeat 1 38 0 1482 192 0 38 chr15 3451745 3452032 -82243722 + AluJb SINE Alu 1 276 -36 277 205 13 13 chr15 3452032 3452110 -82243644 + GA-rich Low_complexity Low_complexity 3 80 0 568 213 8 0 chr15 3453380 3453502 -82242252 - LTR47A LTR ERVL -3 449 327 1396 315 43 22 chr15 3453658 3454486 -82241268 - PABL_B-int LTR ERV1 -251 7505 6660 1730 330 44 36 chr15 3455502 3457156 -82238598 - PABL_B-int LTR ERV1 -2945 4177 2511 29 0 0 0 chr15 3509266 3509295 -82186459 + AT_rich Low_complexity Low_complexity 1 29 0 1017 136 81 10 chr15 3509591 3509789 -82185965 - MER101 LTR ERV1 -1 473 262 1710 148 93 0 chr15 3509796 3509918 -82185836 + AluSx SINE Alu 9 118 -194 216 0 0 0 chr15 3509918 3509942 -82185812 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1710 148 93 0 chr15 3509942 3510097 -82185657 + AluSx SINE Alu 118 312 0 719 158 0 0 chr15 3510135 3510255 -82185499 - MER101 LTR ERV1 -354 120 1 300 365 33 39 chr15 3510358 3510539 -82185215 - HAL1 LINE L1 -2326 181 2 653 208 48 24 chr15 3511311 3511518 -82184236 - AluSg/x SINE Alu -11 298 87 1960 123 10 10 chr15 3511740 3512059 -82183695 - AluSx SINE Alu 0 312 1 1989 150 7 3 chr15 3512063 3512357 -82183397 - AluSx SINE Alu -16 296 2 2108 119 44 0 chr15 3512426 3512769 -82182985 + Tigger3(Golem) DNA MER2_type 2605 2962 -67 2241 172 78 38 chr15 3512770 3512970 -82182784 + MER4B LTR ERV1 1 192 -418 1970 138 17 0 chr15 3512970 3513267 -82182487 + AluSx SINE Alu 4 305 -7 2241 172 78 38 chr15 3513267 3513618 -82182136 + MER4B LTR ERV1 192 574 -36 362 286 8 0 chr15 3514072 3514191 -82181563 + L1MEc LINE L1 111 230 -6166 1109 171 5 0 chr15 3514661 3514866 -82180888 + MER47A DNA MER2_type 3 208 -158 440 217 9 17 chr15 3515281 3515429 -82180325 + ALR/Alpha Satellite centromeric 1 146 -62 368 225 25 17 chr15 3515721 3515841 -82179913 - Tigger5 DNA MER2_type -22 2301 2181 379 163 12 12 chr15 3516049 3516135 -82179619 - L1MC3 LINE L1 -203 7582 7497 261 57 0 0 chr15 3516189 3516224 -82179530 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 711 255 18 99 chr15 3516280 3516664 -82179090 - L1MC3 LINE L1 -787 6998 6646 381 230 9 9 chr15 3516668 3516781 -82178973 - L1MC3 LINE L1 -2029 5966 5854 538 245 32 69 chr15 3516781 3516938 -82178816 - L1MC3 LINE L1 -720 5454 5293 2266 91 20 3 chr15 3516938 3517234 -82178520 + AluSq SINE Alu 2 302 -11 538 245 32 69 chr15 3517234 3517521 -82178233 - L1MC3 LINE L1 -881 5293 5013 825 216 9 22 chr15 3517537 3517769 -82177985 - L1MC3 LINE L1 -1304 4842 4614 2667 209 29 18 chr15 3517831 3518535 -82177219 - L1PA16 LINE L1 -3 6165 5487 7879 94 39 20 chr15 3518642 3518707 -82177047 - HSMAR1 DNA Mariner -47 1240 1178 2086 114 0 0 chr15 3518707 3519016 -82176738 - AluSx SINE Alu 0 309 1 7879 94 39 20 chr15 3519016 3520167 -82175587 - HSMAR1 DNA Mariner -109 1178 1 1634 198 13 11 chr15 3520167 3520540 -82175214 - L1PA16 LINE L1 -1683 4463 4090 1498 123 3 78 chr15 3520540 3520822 -82174932 + L1PA15 LINE L1 5901 6163 -2 3285 215 102 55 chr15 3520825 3522074 -82173680 - L1MC3 LINE L1 -621 7164 5858 296 230 93 12 chr15 3522089 3522250 -82173504 - L1MC3 LINE L1 -740 5438 5265 * 1788 124 7 70 chr15 3522212 3522640 -82173114 - L1MA2 LINE L1 0 6304 5265 2259 181 67 85 chr15 3522745 3522777 -82172977 - MER67B LTR ERV1 -144 517 486 3126 176 75 52 chr15 3522777 3523488 -82172266 + LTR8A LTR ERV1 1 727 0 2259 181 67 85 chr15 3523488 3524031 -82171723 - MER67B LTR ERV1 -175 486 1 4608 202 22 18 chr15 3524049 3525188 -82170566 + L1MB2 LINE L1 4638 5771 -400 1220 186 53 9 chr15 3525188 3525414 -82170340 - MER46A DNA MER2_type 0 236 1 4608 202 22 18 chr15 3525414 3525757 -82169997 + L1MB2 LINE L1 5771 6123 -48 824 227 7 7 chr15 3525757 3525907 -82169847 + FRAM SINE Alu 1 150 -16 4608 202 22 18 chr15 3525907 3525943 -82169811 + L1MB2 LINE L1 6123 6157 -14 666 179 50 7 chr15 3526043 3526183 -82169571 + LTR10C LTR ERV1 446 591 0 2247 114 0 0 chr15 3527606 3527905 -82167849 + AluSx SINE Alu 7 305 -7 2445 102 151 5 chr15 3528095 3528486 -82167268 - LTR7 LTR ERV1 -2 448 1 2410 96 48 13 chr15 3528486 3528863 -82166891 - HERVH LTR ERV1 0 7713 7324 1215 163 9 26 chr15 3528863 3529090 -82166664 - HERVH LTR ERV1 -1894 5819 5597 8075 126 1 1 chr15 3529091 3530256 -82165498 - HERVH LTR ERV1 -2567 5146 3994 1552 150 0 4 chr15 3530266 3530512 -82165242 - HERVH LTR ERV1 -3977 3736 3492 1005 120 7 0 chr15 3530502 3530652 -82165102 - HERVH LTR ERV1 -4423 3290 3140 * 14914 110 21 11 chr15 3530646 3533360 -82162394 - HERVH LTR ERV1 -4726 2987 1 2626 90 125 8 chr15 3533362 3533763 -82161991 - LTR7 LTR ERV1 -2 448 1 331 264 39 16 chr15 3534312 3534441 -82161313 - L1MEc LINE L1 -6153 243 112 4315 88 22 0 chr15 3534601 3535228 -82160526 - L1P LINE L1 -1063 5083 4443 5839 34 4 1 chr15 3535328 3536028 -82159726 - L1P LINE L1 -1566 4580 3879 2275 33 3 0 chr15 3536019 3536949 -82158805 + L1PA2 LINE L1 5089 6155 0 * 3356 34 5 0 chr15 3536960 3537344 -82158410 + L1PA4 LINE L1 5770 6155 0 336 292 70 70 chr15 3537589 3537873 -82157881 - HsTC2 DNA Tc2 -198 1700 1241 5138 103 5 1 chr15 3539029 3539691 -82156063 - MER4A LTR ERV1 0 664 1 2811 133 164 30 chr15 3539796 3540337 -82155417 - LTR18B LTR ERVL 0 614 1 2661 246 53 31 chr15 3540486 3541313 -82154441 - L1MDa LINE L1 -3138 3402 2547 2286 73 30 3 chr15 3541313 3541615 -82154139 - AluY SINE Alu -1 310 1 2661 246 53 31 chr15 3541615 3541842 -82153912 - L1MDa LINE L1 -3993 2547 2326 944 201 22 48 chr15 3541852 3542125 -82153629 + L1MCa LINE L1 1955 2220 -4206 983 268 104 19 chr15 3542125 3542442 -82153312 - MLT1E LTR MaLR -249 344 1 571 261 49 0 chr15 3542446 3542588 -82153166 - L1MD3 LINE L1 -282 7713 7565 532 163 0 10 chr15 3542832 3542930 -82152824 - L1MC3 LINE L1 -11 7774 7678 262 277 25 57 chr15 3543035 3543194 -82152560 - L1M4 LINE L1 -2391 3755 3602 3794 234 126 17 chr15 3543221 3544514 -82151240 - L1M4 LINE L1 -1112 5034 3601 382 190 83 33 chr15 3544599 3544700 -82151054 + MLT1E LTR MaLR 281 427 -166 904 199 99 5 chr15 3544758 3544969 -82150785 - MER34 LTR ERV1 -283 259 29 25 51 0 0 chr15 3545546 3545585 -82150169 + AT_rich Low_complexity Low_complexity 1 39 0 33 25 0 0 chr15 3545643 3545683 -82150071 + AT_rich Low_complexity Low_complexity 1 40 0 21886 121 66 1 chr15 3545683 3549018 -82146736 - L1P LINE L1 -818 5336 1785 5840 153 19 83 chr15 3549036 3550304 -82145450 + L1P LINE L1 591 1777 -4369 874 142 39 0 chr15 3550314 3550469 -82145285 - L1M2 LINE L1 -821 5479 5319 465 348 103 11 chr15 3551924 3552275 -82143479 + L1M4 LINE L1 4755 5137 -1009 183 296 19 0 chr15 3552376 3552430 -82143324 + MIR SINE MIR 137 191 -71 863 269 83 28 chr15 3552527 3552962 -82142792 - HsTC2 DNA Tc2 -22 1876 1242 2414 73 0 25 chr15 3552962 3553277 -82142477 - AluY SINE Alu -4 307 1 251 354 35 0 chr15 3553293 3553406 -82142348 - HsTC2 DNA Tc2 -1744 154 38 247 241 0 0 chr15 3553651 3553705 -82142049 - MER54A LTR ERVL -834 67 14 252 218 36 0 chr15 3553903 3553958 -82141796 - MER52A LTR ERV1 0 1755 1699 5005 226 78 47 chr15 3553970 3554510 -82141244 - MER52A LTR ERV1 -270 1485 964 180 0 0 0 chr15 3554510 3554530 -82141224 + (CTCTG)n Simple_repeat Simple_repeat 1 20 0 5005 226 78 47 chr15 3554530 3555428 -82140326 - MER52A LTR ERV1 -791 964 1 868 246 104 106 chr15 3555611 3556586 -82139168 + LTR28 LTR ERV1 1 1755 0 656 224 64 4 chr15 3556587 3556852 -82138902 + L1M4 LINE L1 5215 5485 -699 552 223 0 9 chr15 3558352 3558464 -82137290 + FLAM_A SINE Alu 20 130 -12 200 278 0 0 chr15 3558914 3558968 -82136786 + MIR SINE MIR 1 54 -208 3033 44 14 0 chr15 3559093 3559460 -82136294 - LTR10C LTR ERV1 -219 372 1 657 103 0 0 chr15 3560297 3560384 -82135370 + AluY SINE Alu 205 291 -20 476 13 66 0 chr15 3560483 3560559 -82135195 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 1663 224 42 8 chr15 3560562 3560919 -82134835 - MLT1A2 LTR MaLR -4 370 2 286 78 20 20 chr15 3560925 3560976 -82134778 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 785 317 65 18 chr15 3561168 3561565 -82134189 + L2 LINE L2 2827 3242 -71 237 33 0 0 chr15 3561700 3561730 -82134024 + (CA)n Simple_repeat Simple_repeat 2 31 0 1991 132 24 7 chr15 3562032 3562356 -82133398 + AluSx SINE Alu 1 312 0 2308 92 0 7 chr15 3567126 3567432 -82128322 + AluSx SINE Alu 1 304 -8 213 255 0 0 chr15 3567498 3567549 -82128205 - MIR SINE MIR -188 74 24 808 103 9 9 chr15 3568421 3568537 -82127217 - AluSg1 SINE Alu -193 116 1 709 294 59 88 chr15 3568537 3569229 -82126525 + L2 LINE L2 2633 3312 -1 237 278 0 14 chr15 3569506 3569578 -82126176 - MIR SINE MIR -64 198 128 297 316 35 18 chr15 3570556 3570670 -82125084 + MIR SINE MIR 20 135 -73 554 269 88 35 chr15 3572044 3572282 -82123472 + L1M4 LINE L1 526 789 -5595 2240 102 6 13 chr15 3572282 3572596 -82123158 - AluSx SINE Alu 0 312 1 554 269 88 35 chr15 3572596 3572699 -82123055 + L1M4 LINE L1 789 885 -5499 * 1698 213 35 25 chr15 3572695 3573206 -82122548 + L1M4 LINE L1 1173 1688 -4696 351 280 82 78 chr15 3573306 3573574 -82122180 + L1M4 LINE L1 5064 5332 -1050 2562 39 39 3 chr15 3573731 3574098 -82121656 + L1PA4 LINE L1 5785 6163 0 266 239 72 43 chr15 3574266 3574404 -82121350 - HsTC2 DNA Tc2 -25 1873 1732 847 155 19 0 chr15 3574404 3574565 -82121189 + L1M2 LINE L1 5509 5672 -619 446 311 75 23 chr15 3574567 3574872 -82120882 - HsTC2 DNA Tc2 -169 1729 1233 2422 84 3 0 chr15 3575535 3575843 -82119911 + AluSx SINE Alu 1 309 -3 856 236 209 27 chr15 3577041 3577620 -82118134 + L1M4 LINE L1 4593 5301 -845 1619 141 15 19 chr15 3577620 3577890 -82117864 + AluJb SINE Alu 26 294 -18 856 236 209 27 chr15 3577890 3577950 -82117804 + L1M4 LINE L1 5301 5349 -797 2384 208 79 25 chr15 3577991 3578530 -82117224 + L1MC3 LINE L1 7072 7656 -129 2190 61 0 48 chr15 3578530 3578863 -82116891 + AluY SINE Alu 1 319 0 2384 208 79 25 chr15 3578863 3578992 -82116762 + L1MC3 LINE L1 7656 7777 -8 200 173 0 39 chr15 3579100 3579152 -82116602 + T-rich Low_complexity Low_complexity 2 51 0 474 247 34 14 chr15 3579228 3579374 -82116380 + L1MD3 LINE L1 7565 7713 -282 672 296 71 40 chr15 3579389 3579713 -82116041 + MLT1E LTR MaLR 12 345 -248 969 158 43 63 chr15 3579713 3579752 -82116002 - L1MCa LINE L1 -4207 2219 2181 2176 119 0 0 chr15 3579752 3580047 -82115707 + AluSx SINE Alu 1 295 -17 969 158 43 63 chr15 3580047 3580310 -82115444 - L1MCa LINE L1 -4245 2181 1923 2438 228 46 27 chr15 3580310 3580445 -82115309 + L1MCa LINE L1 2212 2343 -4083 1521 176 3 44 chr15 3580445 3580763 -82114991 + AluJo SINE Alu 1 305 -7 2438 228 46 27 chr15 3580763 3581814 -82113940 + L1MCa LINE L1 2343 3412 -3014 2764 182 8 45 chr15 3583215 3583861 -82111893 + MER54B LTR ERVL 1 678 -115 311 155 0 52 chr15 3586367 3586425 -82109329 - HERVL74 LTR ERVL -1048 4637 4583 * 957 144 7 0 chr15 3586407 3586560 -82109194 - HERVL74 LTR ERVL -1612 4073 3920 829 183 7 13 chr15 3586565 3586718 -82109036 - HERVL74 LTR ERVL -2043 3642 3491 1980 220 33 27 chr15 3586719 3587241 -82108513 - HERVL74 LTR ERVL -2353 3332 2808 2288 194 25 15 chr15 3587322 3587842 -82107912 - HERVL74 LTR ERVL -2873 2812 2288 1453 107 60 0 chr15 3587842 3588057 -82107697 - MER30 DNA MER1_type 0 230 3 186 103 0 0 chr15 3588278 3588307 -82107447 + (TC)n Simple_repeat Simple_repeat 2 30 0 1848 181 19 2 chr15 3589652 3590282 -82105472 + MER54B LTR ERVL 1 682 -111 284 247 158 0 chr15 3590594 3590752 -82105002 + L1MC3 LINE L1 370 552 -6055 21 57 0 0 chr15 3591600 3591635 -82104119 + AT_rich Low_complexity Low_complexity 1 35 0 7580 29 1 1 chr15 3591642 3592726 -82103028 + L1PA4 LINE L1 5072 6155 0 261 316 79 9 chr15 3593378 3593695 -82102059 + L1M4 LINE L1 4754 5092 -1054 337 332 157 9 chr15 3593741 3593964 -82101790 + MIR SINE MIR 7 262 0 280 240 70 23 chr15 3594003 3594132 -82101622 - HsTC2 DNA Tc2 -28 1870 1736 747 170 9 2 chr15 3594193 3594348 -82101406 + L1M2 LINE L1 5547 5707 -595 1567 271 42 24 chr15 3594615 3595287 -82100467 + L1MC3 LINE L1 3918 4609 -1817 6890 60 13 2 chr15 3595287 3596654 -82099100 - L1PA7 LINE L1 -2 6152 4774 1567 271 42 24 chr15 3596654 3596820 -82098934 + L1MC3 LINE L1 4609 4771 -1655 747 141 63 0 chr15 3596821 3596963 -82098791 - L1MA4A LINE L1 -260 6043 5893 1473 89 31 0 chr15 3596963 3597188 -82098566 + L1MA4A LINE L1 6066 6297 -6 2425 232 46 37 chr15 3597190 3598153 -82097601 + L1MC3 LINE L1 4762 5734 -730 1122 246 113 15 chr15 3598153 3598429 -82097325 + L1MC3 LINE L1 6134 6381 -1684 438 20 0 0 chr15 3598429 3598480 -82097274 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1122 246 113 15 chr15 3598480 3598671 -82097083 + L1MC3 LINE L1 6381 6647 -1418 1120 265 11 23 chr15 3598683 3599030 -82096724 + L1MC3 LINE L1 6792 7134 -931 * 14085 204 105 29 chr15 3599027 3603746 -82092008 + L1P3 LINE L1 5 5184 -1277 2033 135 10 0 chr15 3605820 3606116 -82089638 + AluSg SINE Alu 1 299 -11 805 193 48 70 chr15 3606244 3606514 -82089240 - LTR48B LTR ERV1 0 644 381 1474 174 189 10 chr15 3606514 3606917 -82088837 - LTR48 LTR ERV1 -312 475 1 2139 96 7 0 chr15 3607040 3607332 -82088422 + AluY SINE Alu 14 307 -4 23 33 0 0 chr15 3607356 3607386 -82088368 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr15 3607811 3607833 -82087921 + AT_rich Low_complexity Low_complexity 1 22 0 588 200 8 0 chr15 3607979 3608099 -82087655 - MER70A LTR ERVL -313 159 39 818 219 39 32 chr15 3608138 3608421 -82087333 - L1ME1 LINE L1 -118 6048 5764 1838 238 62 32 chr15 3608658 3608832 -82086922 - L1ME1 LINE L1 -918 5228 5061 405 0 0 0 chr15 3608832 3608877 -82086877 + (TG)n Simple_repeat Simple_repeat 1 45 0 1540 189 18 4 chr15 3608878 3609158 -82086596 - AluJb SINE Alu -28 284 1 1838 238 62 32 chr15 3609158 3609802 -82085952 - L1ME1 LINE L1 -1084 5062 4383 2513 61 3 6 chr15 3611606 3611918 -82083836 - AluY SINE Alu 0 311 1 1725 221 8 3 chr15 3612428 3612790 -82082964 - MER54B LTR ERVL -428 365 2 348 234 140 37 chr15 3612980 3613194 -82082560 - HsTC2 DNA Tc2 -256 1642 1231 259 261 14 0 chr15 3613191 3613260 -82082494 - HsTC2 DNA Tc2 -1747 151 82 * 321 318 13 26 chr15 3614243 3614397 -82081357 - MLT1E LTR MaLR -441 152 1 692 187 43 0 chr15 3614401 3614540 -82081214 - L1MD3 LINE L1 -282 7713 7569 1620 201 0 7 chr15 3614606 3614890 -82080864 + AluJb SINE Alu 1 282 -30 1351 131 0 5 chr15 3614908 3615106 -82080648 - AluSg/x SINE Alu -30 280 84 23 33 0 0 chr15 3615289 3615319 -82080435 + AT_rich Low_complexity Low_complexity 1 30 0 3262 236 87 50 chr15 3615319 3616182 -82079572 - L1MC3 LINE L1 -19 7766 6833 239 0 32 0 chr15 3616182 3616213 -82079541 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3262 236 87 50 chr15 3616213 3616724 -82079030 - L1MC3 LINE L1 -952 6833 6342 479 287 80 3 chr15 3616773 3617059 -82078695 - L1MC3 LINE L1 -1624 6161 5854 2607 212 45 150 chr15 3617068 3618138 -82077616 - L1MC3 LINE L1 -725 5453 4272 2048 150 0 0 chr15 3618138 3618432 -82077322 - AluSq SINE Alu -19 294 1 2607 212 45 150 chr15 3618432 3618482 -82077272 - L1MC3 LINE L1 -1906 4272 4218 1280 205 0 8 chr15 3618482 3618721 -82077033 - AluJo SINE Alu -75 237 1 2607 212 45 150 chr15 3618721 3618735 -82077019 - L1MC3 LINE L1 -1960 4218 4204 2169 99 0 3 chr15 3618735 3619018 -82076736 - AluSx SINE Alu -20 292 11 2607 212 45 150 chr15 3619018 3619818 -82075936 - L1MC3 LINE L1 -1974 4204 3520 359 234 213 25 chr15 3619818 3620015 -82075739 + MLT1E LTR MaLR 346 622 -2 645 226 50 13 chr15 3620016 3620255 -82075499 + L1MD3 LINE L1 7721 7968 -27 4504 184 23 21 chr15 3620259 3621264 -82074490 - L1MA7 LINE L1 -2 6289 5286 3844 98 8 6 chr15 3621264 3621774 -82073980 - MER9 LTR ERVK 0 511 1 4504 184 23 21 chr15 3621774 3621799 -82073955 - L1MA7 LINE L1 -1005 5286 5263 4200 94 25 4 chr15 3622435 3622987 -82072767 - LTR6A LTR ERV1 0 564 1 3706 226 79 21 chr15 3624024 3624874 -82070880 + MER54A LTR ERVL 3 901 0 1027 247 87 31 chr15 3625172 3625630 -82070124 + HsTC2 DNA Tc2 1216 1875 -23 234 319 21 11 chr15 3625714 3625808 -82069946 - MIR SINE MIR -36 226 132 22 80 0 0 chr15 3626086 3626136 -82069618 + AT_rich Low_complexity Low_complexity 1 50 0 1533 201 3 13 chr15 3627627 3627925 -82067829 + AluJo SINE Alu 1 295 -17 1704 211 28 11 chr15 3627940 3628296 -82067458 - MER47A DNA MER2_type -1 365 4 322 256 12 0 chr15 3628703 3628789 -82066965 - L1MEc LINE L1 -6210 186 100 2330 95 0 3 chr15 3628846 3629141 -82066613 + AluSc SINE Alu 1 294 -15 2495 171 38 71 chr15 3629405 3629703 -82066051 - MER7C DNA MER2_type -2426 602 296 2345 84 3 0 chr15 3629703 3629999 -82065755 + AluSp SINE Alu 1 297 -16 2495 171 38 71 chr15 3629999 3630188 -82065566 - MER7C DNA MER2_type -2732 296 133 1783 156 3 59 chr15 3630188 3630508 -82065246 + AluSx SINE Alu 1 302 -10 2495 171 38 71 chr15 3630508 3630626 -82065128 - MER7C DNA MER2_type -2895 133 13 2054 93 14 4 chr15 3630864 3631143 -82064611 + AluSg SINE Alu 1 282 -28 349 206 113 64 chr15 3631156 3631297 -82064457 - HsTC2 DNA Tc2 -344 1554 1231 2356 78 0 10 chr15 3632290 3632597 -82063157 + AluY SINE Alu 2 305 -6 1941 285 32 22 chr15 3633430 3633512 -82062242 - L1MCa LINE L1 -3014 3412 3332 198 0 0 0 chr15 3633512 3633534 -82062220 + (TA)n Simple_repeat Simple_repeat 2 23 0 2390 54 40 0 chr15 3633535 3633831 -82061923 - AluSg SINE Alu 0 310 3 1941 285 32 22 chr15 3633831 3634199 -82061555 - L1MCa LINE L1 -3094 3332 2969 2892 88 3 0 chr15 3634199 3634553 -82061201 + THE1A LTR MaLR 1 355 0 1941 285 32 22 chr15 3634553 3634920 -82060834 - L1MCa LINE L1 -3457 2969 2584 1111 108 0 7 chr15 3634921 3635069 -82060685 - AluSg/x SINE Alu -94 216 70 441 193 59 8 chr15 3635125 3635244 -82060510 - L1MA8 LINE L1 -4 6287 6163 249 216 0 0 chr15 3635242 3635293 -82060461 - L1ME LINE L1 -706 5740 5690 * 1399 141 49 20 chr15 3635280 3635373 -82060381 - L1MCa LINE L1 -3954 2472 2383 1565 187 18 0 chr15 3635373 3635682 -82060072 - AluSx SINE Alu 0 314 1 1399 141 49 20 chr15 3635682 3635932 -82059822 - L1MCa LINE L1 -4043 2383 2210 362 193 118 8 chr15 3635932 3636031 -82059723 + L1MCa LINE L1 1921 2036 -4390 183 42 0 0 chr15 3636031 3636055 -82059699 + (TG)n Simple_repeat Simple_repeat 2 25 0 362 193 118 8 chr15 3636055 3636074 -82059680 + L1MCa LINE L1 2036 2052 -4374 509 248 165 0 chr15 3636079 3636212 -82059542 - MER41E LTR ERV1 -335 177 23 5565 228 77 43 chr15 3636649 3636806 -82058948 - L1MC3 LINE L1 -6 7779 7629 2086 117 0 3 chr15 3636806 3637123 -82058631 - AluSx SINE Alu 0 316 1 5565 228 77 43 chr15 3637123 3638823 -82056931 - L1MC3 LINE L1 -156 7629 5858 2011 132 13 7 chr15 3638836 3639140 -82056614 - AluSq SINE Alu -7 306 1 1428 251 71 18 chr15 3639141 3639778 -82055976 - L1MC3 LINE L1 -722 5452 4782 1682 230 6 11 chr15 3639778 3640126 -82055628 - MER52A LTR ERV1 0 1755 1410 1073 282 8 56 chr15 3640149 3640761 -82054993 - MER52A LTR ERV1 -570 1185 464 1138 184 41 33 chr15 3640761 3641006 -82054748 - LTR12 LTR ERV1 -251 463 217 1040 244 87 31 chr15 3641994 3642452 -82053302 + HsTC2 DNA Tc2 1216 1875 -23 251 267 61 61 chr15 3642527 3642658 -82053096 - MIR SINE MIR -36 226 96 22 80 0 0 chr15 3642899 3642949 -82052805 + AT_rich Low_complexity Low_complexity 1 50 0 1533 201 3 13 chr15 3644439 3644737 -82051017 + AluJo SINE Alu 1 295 -17 1704 211 28 11 chr15 3644752 3645108 -82050646 - MER47A DNA MER2_type -1 365 4 513 268 14 0 chr15 3645463 3645601 -82050153 - L1MEc LINE L1 -6157 239 100 2365 95 0 0 chr15 3645658 3645952 -82049802 + AluSc SINE Alu 1 294 -15 2511 170 38 71 chr15 3646216 3646514 -82049240 - MER7C DNA MER2_type -2426 602 296 2345 84 3 0 chr15 3646514 3646810 -82048944 + AluSp SINE Alu 1 297 -16 2511 170 38 71 chr15 3646810 3646999 -82048755 - MER7C DNA MER2_type -2732 296 133 1845 153 0 59 chr15 3646999 3647319 -82048435 + AluSx SINE Alu 1 301 -11 2511 170 38 71 chr15 3647319 3647437 -82048317 - MER7C DNA MER2_type -2895 133 13 2292 75 7 0 chr15 3647675 3647955 -82047799 + AluSg SINE Alu 1 282 -28 349 206 113 64 chr15 3647967 3648108 -82047646 - HsTC2 DNA Tc2 -344 1554 1231 2352 84 0 10 chr15 3649101 3649412 -82046342 + AluY SINE Alu 2 309 -2 1818 279 27 43 chr15 3650246 3650351 -82045403 - L1MCa LINE L1 -3014 3412 3307 2306 62 41 0 chr15 3650351 3650643 -82045111 - AluSg SINE Alu -4 306 3 1818 279 27 43 chr15 3650643 3651011 -82044743 - L1MCa LINE L1 -3119 3307 2955 2931 82 3 0 chr15 3651011 3651365 -82044389 + THE1A LTR MaLR 1 355 0 1818 279 27 43 chr15 3651365 3651732 -82044022 - L1MCa LINE L1 -3471 2955 2584 1111 108 0 7 chr15 3651733 3651881 -82043873 - AluSg/x SINE Alu -94 216 70 441 193 59 8 chr15 3651937 3652056 -82043698 - L1MA8 LINE L1 -4 6287 6163 249 216 0 0 chr15 3652054 3652105 -82043649 - L1ME LINE L1 -706 5740 5690 * 1401 138 45 20 chr15 3652092 3652185 -82043569 - L1MCa LINE L1 -3954 2472 2383 1565 187 18 0 chr15 3652185 3652494 -82043260 - AluSx SINE Alu 0 314 1 1401 138 45 20 chr15 3652494 3652745 -82043009 - L1MCa LINE L1 -4043 2383 2210 362 193 118 8 chr15 3652745 3652844 -82042910 + L1MCa LINE L1 1921 2036 -4390 183 42 0 0 chr15 3652844 3652868 -82042886 + (TG)n Simple_repeat Simple_repeat 2 25 0 362 193 118 8 chr15 3652868 3652887 -82042867 + L1MCa LINE L1 2036 2052 -4374 509 248 165 0 chr15 3652892 3653025 -82042729 - MER41E LTR ERV1 -335 177 23 5631 230 77 40 chr15 3653462 3653616 -82042138 - L1MC3 LINE L1 -6 7779 7632 2086 117 0 3 chr15 3653616 3653948 -82041806 - AluSx SINE Alu 0 331 1 5631 230 77 40 chr15 3653948 3655647 -82040107 - L1MC3 LINE L1 -153 7632 5858 2138 133 7 0 chr15 3655660 3655962 -82039792 - AluSx SINE Alu -8 304 1 1438 252 68 18 chr15 3655963 3656602 -82039152 - L1MC3 LINE L1 -722 5452 4782 1682 230 6 11 chr15 3656602 3656950 -82038804 - MER52A LTR ERV1 0 1755 1410 345 244 22 0 chr15 3656973 3657063 -82038691 - MER52A LTR ERV1 -570 1185 1094 1050 296 6 66 chr15 3657068 3657585 -82038169 - MER52A LTR ERV1 -806 949 464 2225 139 88 25 chr15 3657585 3657981 -82037773 - LTR12 LTR ERV1 -251 463 43 553 275 119 24 chr15 3657981 3658382 -82037372 - MER52A LTR ERV1 -635 643 29 601 199 72 48 chr15 3658396 3658562 -82037192 - L1MC3 LINE L1 -1361 4785 4616 834 224 0 0 chr15 3659868 3660043 -82035711 - AluJb SINE Alu 0 306 132 744 278 68 23 chr15 3660405 3660714 -82035040 + HsTC2 DNA Tc2 1227 1725 -173 902 123 71 0 chr15 3660716 3660871 -82034883 - L1M2 LINE L1 -618 5673 5508 346 168 106 9 chr15 3660896 3661009 -82034745 + HsTC2 DNA Tc2 1754 1877 -21 358 290 172 11 chr15 3661071 3661257 -82034497 - MIR SINE MIR -40 222 7 383 280 84 84 chr15 3661292 3661388 -82034366 - L1M4 LINE L1 -1050 5096 5001 2000 125 18 0 chr15 3661388 3661667 -82034087 + AluSg SINE Alu 1 284 -26 383 280 84 84 chr15 3661667 3661913 -82033841 - L1M4 LINE L1 -1144 5002 4754 198 0 0 0 chr15 3662044 3662066 -82033688 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 4202 245 41 38 chr15 3663799 3665146 -82030608 + L1PA13 LINE L1 1 1409 -5378 4315 135 0 5 chr15 3665149 3665778 -82029976 + L1PA15 LINE L1 5533 6158 -7 888 148 8 0 chr15 3666411 3666539 -82029215 + AluSq/x SINE Alu 5 133 -179 1970 141 3 0 chr15 3666543 3666826 -82028928 + AluSg SINE Alu 2 285 -25 216 0 0 0 chr15 3666899 3666923 -82028831 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 488 329 78 13 chr15 3667162 3667393 -82028361 - L1MEc LINE L1 -6089 307 62 551 231 111 53 chr15 3667772 3667997 -82027757 - HsTC2 DNA Tc2 -246 1652 1239 233 310 69 45 chr15 3668517 3668807 -82026947 - L2 LINE L2 -62 3210 2914 246 226 0 0 chr15 3669022 3669075 -82026679 + L1MCa LINE L1 2074 2126 -4300 701 185 15 0 chr15 3669120 3669255 -82026499 + L1MCa LINE L1 2080 2216 -4210 366 342 76 11 chr15 3669318 3669502 -82026252 - MLT1E LTR MaLR -330 263 68 2817 218 11 44 chr15 3669506 3670122 -82025632 - L1MA7 LINE L1 -353 5938 5303 1633 194 11 0 chr15 3670122 3670406 -82025348 - AluJo SINE Alu -25 287 1 2239 93 27 0 chr15 3670416 3670716 -82025038 - AluSx SINE Alu -4 308 1 2817 218 11 44 chr15 3670716 3670785 -82024969 - L1MA7 LINE L1 -997 5294 5263 685 48 0 0 chr15 3671259 3671343 -82024411 + MSTB LTR MaLR 1 84 -342 2104 176 72 17 chr15 3671366 3671770 -82023984 + MSTB LTR MaLR 1 426 0 2304 95 0 25 chr15 3672637 3672954 -82022800 + AluSc SINE Alu 1 309 0 2301 101 3 0 chr15 3673732 3674030 -82021724 + AluSp SINE Alu 1 299 -14 3208 239 97 3 chr15 3674508 3675272 -82020482 + MER54A LTR ERVL 59 894 -7 2054 94 63 23 chr15 3675396 3675695 -82020059 + AluSp SINE Alu 1 311 -2 1376 200 28 39 chr15 3675722 3676007 -82019747 + AluJo SINE Alu 1 282 -30 2256 211 33 7 chr15 3676147 3676568 -82019186 + MSTB1 LTR MaLR 1 432 0 504 258 102 27 chr15 3676660 3676885 -82018869 + HsTC2 DNA Tc2 1235 1652 -246 1375 133 0 0 chr15 3676894 3677082 -82018672 - AluSg/x SINE Alu -12 298 111 2435 67 0 10 chr15 3677083 3677381 -82018373 - AluY SINE Alu -11 300 6 266 315 80 24 chr15 3677385 3677598 -82018156 + HsTC2 DNA Tc2 1649 1873 -25 191 370 10 10 chr15 3677651 3677751 -82018003 - MIR SINE MIR -22 240 141 241 289 70 30 chr15 3677872 3678073 -82017681 - L1M4 LINE L1 -1049 5097 4889 311 144 0 178 chr15 3680482 3680572 -82015182 - MER47A DNA MER2_type 0 366 291 1762 166 14 0 chr15 3680573 3680869 -82014885 - MER47A DNA MER2_type -44 322 23 302 333 30 0 chr15 3681316 3681481 -82014273 - L1MEc LINE L1 -6137 259 90 2409 197 36 60 chr15 3681792 3682219 -82013535 - MER7C DNA MER2_type -2427 601 165 2435 65 0 7 chr15 3682219 3682525 -82013229 + AluY SINE Alu 1 304 -7 2409 197 36 60 chr15 3682525 3682572 -82013182 - MER7C DNA MER2_type -2863 165 118 2353 95 0 0 chr15 3682572 3682867 -82012887 + AluSg SINE Alu 1 295 -15 2409 197 36 60 chr15 3682867 3683005 -82012749 - MER7C DNA MER2_type -2910 118 3 528 159 86 73 chr15 3683199 3683350 -82012404 - HsTC2 DNA Tc2 -332 1566 1238 889 77 0 0 chr15 3683444 3683561 -82012193 + AluY SINE Alu 195 311 0 629 206 0 0 chr15 3683609 3683716 -82012038 + FAM SINE Alu 58 164 -21 2056 270 45 26 chr15 3685441 3686310 -82009444 - L1M4 LINE L1 -3014 3132 2248 3311 205 35 42 chr15 3686379 3687358 -82008396 - L1MA8 LINE L1 -47 6313 2235 241 163 0 0 chr15 3687358 3687401 -82008353 + LTR30 LTR ERV1 1 43 -679 410 172 49 93 chr15 3687401 3687595 -82008159 + LTR12 LTR ERV1 44 289 -425 269 210 16 0 chr15 3687595 3687657 -82008097 + LTR30 LTR ERV1 556 618 -104 2576 39 3 7 chr15 3687809 3688118 -82007636 + AluY SINE Alu 1 308 -3 216 309 147 0 chr15 3688317 3688385 -82007369 + L2 LINE L2 3192 3269 -44 904 247 63 28 chr15 3688437 3688692 -82007062 - LTR48B LTR ERV1 0 644 381 1189 178 230 57 chr15 3688692 3688907 -82006847 - LTR48 LTR ERV1 -312 475 298 2269 109 0 0 chr15 3688907 3689209 -82006545 - AluSg SINE Alu -8 302 1 1189 178 230 57 chr15 3689209 3689398 -82006356 - LTR48 LTR ERV1 -489 298 1 831 202 98 38 chr15 3689520 3689703 -82006051 + AluJo SINE Alu 85 278 -34 420 20 0 0 chr15 3689703 3689752 -82006002 + (TC)n Simple_repeat Simple_repeat 2 50 0 252 0 0 0 chr15 3689751 3689779 -82005975 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 1137 112 12 0 chr15 3689779 3689940 -82005814 + AluSg/x SINE Alu 135 297 -13 186 0 28 56 chr15 3689943 3689979 -82005775 + (TA)n Simple_repeat Simple_repeat 1 35 0 48 95 0 0 chr15 3691679 3691763 -82003991 + AT_rich Low_complexity Low_complexity 1 84 0 719 94 0 28 chr15 3692770 3692876 -82002878 - FLAM_C SINE Alu -4 139 37 1312 184 58 41 chr15 3692921 3693263 -82002491 - MLT1B LTR MaLR 0 390 43 1390 205 85 53 chr15 3693264 3693366 -82002388 - MER39 LTR ERV1 0 707 610 2139 112 0 3 chr15 3693366 3693660 -82002094 - AluSq SINE Alu -20 293 1 1390 205 85 53 chr15 3693660 3694038 -82001716 - MER39 LTR ERV1 -97 610 4 2459 54 0 7 chr15 3694318 3694616 -82001138 - AluY SINE Alu -15 296 1 2175 113 7 0 chr15 3694678 3694970 -82000784 - AluSx SINE Alu -18 294 1 2379 85 0 3 chr15 3694975 3695282 -82000472 - AluY SINE Alu -4 307 2 287 313 0 0 chr15 3695318 3695398 -82000356 - L1ME1 LINE L1 -30 6136 6057 10312 198 36 10 chr15 3695399 3697024 -81998730 - MER70B-int LTR ERVL -1326 3697 2008 2342 109 0 0 chr15 3697024 3697328 -81998426 + AluSq SINE Alu 1 304 -9 10312 198 36 10 chr15 3697328 3697727 -81998027 - MER70B-int LTR ERVL -3015 2008 1621 5643 189 51 14 chr15 3697737 3697798 -81997956 - MER70B-int LTR ERVL -3867 1156 1099 1984 125 21 0 chr15 3697798 3698087 -81997667 - AluSg SINE Alu -15 295 1 5643 189 51 14 chr15 3698087 3699140 -81996614 - MER70B-int LTR ERVL -3924 1099 1 2020 225 19 16 chr15 3699144 3699629 -81996125 - MER70B LTR ERVL -2 576 91 797 239 0 6 chr15 3699630 3699789 -81995965 - MER70B LTR ERVL -420 158 1 512 256 211 0 chr15 3699792 3700015 -81995739 - L1ME1 LINE L1 -127 6039 5770 818 132 8 0 chr15 3700030 3700151 -81995603 - AluSp/q SINE Alu -21 292 171 23 33 0 0 chr15 3700157 3700187 -81995567 + AT_rich Low_complexity Low_complexity 1 30 0 773 182 0 198 chr15 3700236 3700314 -81995440 - L1ME1 LINE L1 -493 5671 5572 1903 144 3 33 chr15 3700314 3700449 -81995305 + AluSx SINE Alu 1 138 -174 2145 106 0 14 chr15 3700449 3700732 -81995022 + AluSx SINE Alu 1 279 -33 309 26 0 0 chr15 3700732 3700770 -81994984 + (CA)n Simple_repeat Simple_repeat 1 38 0 1903 144 3 33 chr15 3700770 3700939 -81994815 + AluSx SINE Alu 136 297 -15 773 182 0 198 chr15 3700939 3701062 -81994692 - L1ME1 LINE L1 -592 5572 5559 311 59 0 20 chr15 3701062 3701113 -81994641 + (TG)n Simple_repeat Simple_repeat 1 50 0 773 182 0 198 chr15 3701113 3701327 -81994427 - L1ME1 LINE L1 -605 5559 5285 832 259 55 64 chr15 3701378 3701476 -81994278 - L1ME1 LINE L1 -917 5229 5132 2250 110 3 0 chr15 3701476 3701776 -81993978 - AluSx SINE Alu -11 301 1 832 259 55 64 chr15 3701776 3702132 -81993622 - L1ME1 LINE L1 -1014 5132 4779 203 224 0 20 chr15 3702132 3702181 -81993573 + (TA)n Simple_repeat Simple_repeat 2 49 0 1197 248 48 48 chr15 3702184 3702269 -81993485 - L1ME1 LINE L1 -1330 4816 4732 2198 96 3 0 chr15 3702269 3702575 -81993179 + AluSp SINE Alu 1 307 0 1197 248 48 48 chr15 3702575 3702755 -81992999 - L1ME1 LINE L1 -1414 4732 4553 2262 101 0 7 chr15 3702755 3703051 -81992703 + AluSg SINE Alu 1 294 -16 1197 248 48 48 chr15 3703051 3703283 -81992471 - L1ME1 LINE L1 -1592 4554 4317 2144 110 7 0 chr15 3704311 3704603 -81991151 + AluSx SINE Alu 1 294 -18 453 50 0 0 chr15 3705166 3705226 -81990528 + (CGGGGG)n Simple_repeat Simple_repeat 2 61 0 2057 82 0 94 chr15 3705841 3706183 -81989571 - AluSc SINE Alu 0 309 1 1695 233 22 0 chr15 3706307 3706663 -81989091 - MER54B LTR ERVL -429 364 1 738 230 146 42 chr15 3706797 3707132 -81988622 - HsTC2 DNA Tc2 -122 1776 1231 278 259 0 0 chr15 3707128 3707186 -81988568 - HsTC2 DNA Tc2 -1756 142 85 * 22 0 0 0 chr15 3707197 3707219 -81988535 + AT_rich Low_complexity Low_complexity 1 22 0 2186 83 10 20 chr15 3707266 3707567 -81988187 - AluSq SINE Alu -15 298 1 1164 178 18 4 chr15 3707862 3708087 -81987667 - AluJb SINE Alu -1 311 84 404 211 16 24 chr15 3709211 3709334 -81986420 - L1ME1 LINE L1 -2973 3173 3052 681 219 7 0 chr15 3709367 3709504 -81986250 - L1MD3 LINE L1 -282 7713 7576 1430 213 3 56 chr15 3709588 3709912 -81985842 + AluJb SINE Alu 1 307 -5 2651 221 126 12 chr15 3710008 3710352 -81985402 - L1MC3 LINE L1 -11 7774 7471 2405 71 3 0 chr15 3710352 3710646 -81985108 - AluY SINE Alu -16 295 1 2651 221 126 12 chr15 3710646 3711100 -81984654 - L1MC3 LINE L1 -314 7471 6885 646 193 39 8 chr15 3711105 3711252 -81984502 - MSTC LTR MaLR -244 152 1 439 253 0 108 chr15 3711602 3711677 -81984077 + MER54A LTR ERVL 1 83 -818 1932 129 20 14 chr15 3711677 3711972 -81983782 + AluSx SINE Alu 1 297 -15 439 253 0 108 chr15 3711972 3712090 -81983664 + MER54A LTR ERVL 83 173 -728 233 277 24 24 chr15 3712214 3712297 -81983457 - MIR SINE MIR -39 223 141 2240 118 0 7 chr15 3712460 3712766 -81982988 + AluSx SINE Alu 1 304 -8 243 274 154 30 chr15 3712822 3713056 -81982698 - L1 LINE L1 -1125 5021 4759 3821 135 47 72 chr15 3714652 3715361 -81980393 - LTR8 LTR ERV1 0 691 1 1869 124 11 28 chr15 3715468 3715750 -81980004 + AluSg SINE Alu 1 277 -33 3529 122 16 2 chr15 3715750 3716252 -81979502 + LTR10D LTR ERV1 4 512 -1 3954 96 49 2 chr15 3716547 3717076 -81978678 - MER41A LTR ERV1 0 554 1 28 48 0 0 chr15 3717159 3717201 -81978553 + AT_rich Low_complexity Low_complexity 1 42 0 1751 181 47 0 chr15 3717445 3717788 -81977966 - MER47A DNA MER2_type 0 366 8 771 153 0 0 chr15 3717970 3718081 -81977673 + AluSg/x SINE Alu 189 299 -10 3300 173 22 10 chr15 3718103 3718697 -81977057 - MER7C DNA MER2_type 0 602 2 266 238 38 76 chr15 3718903 3719008 -81976746 - HsTC2 DNA Tc2 -345 1553 1277 257 246 98 0 chr15 3719039 3719100 -81976654 - HsTC2 DNA Tc2 -1747 151 85 322 245 19 9 chr15 3720845 3720951 -81974803 - L1 LINE L1 -3014 3132 3026 35 0 0 0 chr15 3720951 3720986 -81974768 + AT_rich Low_complexity Low_complexity 1 35 0 2132 98 0 7 chr15 3720986 3721281 -81974473 - AluY SINE Alu -18 293 1 2320 110 7 0 chr15 3721285 3721593 -81974161 - AluSq SINE Alu -3 310 1 594 232 40 27 chr15 3721630 3721854 -81973900 - L1 LINE L1 -3138 3008 2782 240 139 0 0 chr15 3721854 3721897 -81973857 - MER49 LTR ERV1 0 923 881 * 4141 158 27 22 chr15 3721893 3721996 -81973758 - MER49 LTR ERV1 -206 717 616 2291 113 0 0 chr15 3721996 3722296 -81973458 - AluSx SINE Alu -12 300 1 4141 158 27 22 chr15 3722296 3722902 -81972852 - MER49 LTR ERV1 -307 616 5 840 246 86 4 chr15 3722907 3723187 -81972567 - L1 LINE L1 -3588 2558 2256 694 203 22 11 chr15 3723190 3723372 -81972382 - L1MA8 LINE L1 -2 6569 6386 1034 141 7 0 chr15 3723372 3723521 -81972233 - AluJb SINE Alu -34 278 129 1776 200 44 69 chr15 3723543 3724328 -81971426 - L1MA8 LINE L1 -192 6379 5576 2553 47 0 10 chr15 3724328 3724625 -81971129 - AluY SINE Alu -17 294 1 1776 200 44 69 chr15 3724625 3724934 -81970820 - L1MA8 LINE L1 -995 5576 2213 402 189 79 0 chr15 3724934 3725061 -81970693 + L1MCa LINE L1 1918 2054 -4372 239 191 0 0 chr15 3725061 3725108 -81970646 + LTR66 LTR ERVL 393 439 -171 548 264 7 0 chr15 3725114 3725262 -81970492 + L1MCa LINE L1 2052 2200 -4226 834 265 118 29 chr15 3725268 3725581 -81970173 - MLT1E LTR MaLR -248 345 5 527 273 7 0 chr15 3725590 3725733 -81970021 - L1MD3 LINE L1 -283 7712 7569 1628 153 3 40 chr15 3725806 3726106 -81969648 + AluJb SINE Alu 1 289 -23 5236 243 57 58 chr15 3726176 3727815 -81967939 - L1MC3 LINE L1 0 7785 6146 1946 136 0 34 chr15 3727815 3728145 -81967609 - AluSx SINE Alu 0 320 1 5236 243 57 58 chr15 3728145 3728434 -81967320 - L1MC3 LINE L1 -1639 6146 5858 660 234 47 0 chr15 3728437 3728658 -81967096 - L1MC3 LINE L1 -720 5454 5225 2417 84 3 0 chr15 3728658 3728957 -81966797 - AluY SINE Alu -11 300 1 2516 67 13 0 chr15 3729244 3729544 -81966210 + AluY SINE Alu 2 305 -6 328 325 26 0 chr15 3729748 3729865 -81965889 + HsTC2 DNA Tc2 35 154 -1744 * 1008 233 89 28 chr15 3729863 3730300 -81965454 + HsTC2 DNA Tc2 1234 1873 -25 257 287 56 9 chr15 3730371 3730479 -81965275 - MIR SINE MIR -31 231 119 723 200 23 0 chr15 3730853 3730983 -81964771 + AluJo SINE Alu 3 135 -177 2429 106 0 0 chr15 3730986 3731297 -81964457 + AluSx SINE Alu 1 311 -1 2260 110 3 0 chr15 3731553 3731852 -81963902 + AluSx SINE Alu 3 302 -10 1933 81 84 0 chr15 3732760 3732879 -81962875 + AluSx SINE Alu 1 109 -203 273 29 0 0 chr15 3732879 3732913 -81962841 + (CA)n Simple_repeat Simple_repeat 2 35 0 1933 81 84 0 chr15 3732913 3733066 -81962688 + AluSx SINE Alu 109 296 -16 39 22 0 0 chr15 3734223 3734269 -81961485 + AT_rich Low_complexity Low_complexity 1 46 0 2173 112 3 10 chr15 3734362 3734674 -81961080 + AluSx SINE Alu 1 310 -2 653 235 56 34 chr15 3734888 3735067 -81960687 + MER58A DNA MER1_type 16 198 -26 231 274 32 32 chr15 3735703 3735798 -81959956 - L1ME LINE L1 -5928 142 48 695 165 0 0 chr15 3735965 3736074 -81959680 - AluSg/x SINE Alu -21 291 183 682 140 0 0 chr15 3736076 3736176 -81959578 - AluJo/FLAM SINE Alu -199 113 14 2121 107 0 31 chr15 3736453 3736743 -81959011 + AluSq SINE Alu 1 281 -32 288 0 0 0 chr15 3736743 3736775 -81958979 + (GA)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr15 3737422 3737444 -81958310 + AT_rich Low_complexity Low_complexity 1 22 0 2064 124 18 72 chr15 3737628 3737699 -81958055 - MER47A DNA MER2_type -1957 366 293 2284 98 3 0 chr15 3737699 3737984 -81957770 + AluSg SINE Alu 1 286 -24 2064 124 18 72 chr15 3737984 3738299 -81957455 - MER47A DNA MER2_type -2030 293 1 1975 153 20 0 chr15 3738881 3739175 -81956579 + AluSx SINE Alu 1 300 -12 1622 148 0 104 chr15 3739180 3739517 -81956237 + AluJb SINE Alu 1 302 -10 231 250 172 39 chr15 3739815 3739969 -81955785 - L1MC/D LINE L1 -2004 5804 5615 3161 146 31 29 chr15 3739969 3740525 -81955229 - MER41D LTR ERV1 0 557 1 231 250 172 39 chr15 3740525 3740574 -81955180 - L1MC/D LINE L1 -2193 5615 5574 381 58 0 0 chr15 3740880 3740932 -81954822 + (TG)n Simple_repeat Simple_repeat 1 52 0 2676 155 19 25 chr15 3741194 3741678 -81954076 + MER31A LTR ERV1 5 485 0 2399 93 0 0 chr15 3742309 3742610 -81953144 - AluSx SINE Alu -11 301 1 431 78 62 0 chr15 3742688 3742752 -81953002 + Alu SINE Alu 5 72 -237 460 111 12 12 chr15 3743172 3743253 -81952501 + L1MB3 LINE L1 6100 6180 -3 2189 119 3 0 chr15 3743275 3743569 -81952185 - AluSg SINE Alu -15 295 1 2363 107 0 0 chr15 3744073 3744381 -81951373 - AluSx SINE Alu -4 308 1 2466 75 0 10 chr15 3744463 3744768 -81950986 - AluY SINE Alu -9 302 1 2343 104 7 0 chr15 3744931 3745230 -81950524 + AluSx SINE Alu 1 301 -11 1163 228 134 37 chr15 3745231 3745558 -81950196 + MER39 LTR ERV1 19 313 -394 2352 99 0 13 chr15 3745558 3745872 -81949882 + AluSg SINE Alu 1 310 0 1163 228 134 37 chr15 3745872 3746006 -81949748 + MER39 LTR ERV1 313 662 -45 1642 177 7 0 chr15 3746080 3746357 -81949397 - AluSx SINE Alu -16 296 18 3577 194 62 90 chr15 3746420 3746600 -81949154 - LTR49-int LTR ERV1 -3587 1349 1165 2247 113 0 0 chr15 3746600 3746900 -81948854 - AluSx SINE Alu -11 301 2 3577 194 62 90 chr15 3746900 3747661 -81948093 - LTR49-int LTR ERV1 -3771 1165 440 1816 113 4 4 chr15 3747661 3747928 -81947826 + AluSx SINE Alu 44 310 0 3577 194 62 90 chr15 3747928 3748073 -81947681 - LTR49-int LTR ERV1 -4496 440 292 2329 109 3 0 chr15 3748090 3748420 -81947334 + AluSx SINE Alu 1 312 0 355 228 51 112 chr15 3748427 3748498 -81947256 - LTR49-int LTR ERV1 -4661 1670 1596 1934 143 0 3 chr15 3748498 3748784 -81946970 + AluJo SINE Alu 1 285 -27 355 228 51 112 chr15 3748784 3748909 -81946845 - LTR49-int LTR ERV1 -4735 1596 1486 317 226 59 39 chr15 3748910 3749012 -81946742 + U13 snRNA snRNA 1 104 0 208 217 14 58 chr15 3749016 3749085 -81946669 + A-rich Low_complexity Low_complexity 5 70 0 392 182 74 74 chr15 3749086 3749207 -81946547 - LTR49-int LTR ERV1 -4836 1495 1375 2541 59 0 3 chr15 3749378 3749682 -81946072 - AluY SINE Alu -8 303 1 848 231 68 57 chr15 3750025 3750438 -81945316 - MER39 LTR ERV1 -27 650 269 385 283 0 0 chr15 3750422 3750528 -81945226 - MER34 LTR ERV1 -428 114 9 * 276 53 0 0 chr15 3750556 3750594 -81945160 + (CA)n Simple_repeat Simple_repeat 2 39 0 927 230 67 60 chr15 3751420 3751636 -81944118 + MLT1E1 LTR MaLR 54 267 -326 1866 79 0 17 chr15 3751636 3751876 -81943878 + AluY SINE Alu 55 290 -21 927 230 67 60 chr15 3751876 3752029 -81943725 + MLT1E1 LTR MaLR 267 417 -176 1727 190 7 3 chr15 3752029 3752329 -81943425 + AluJb SINE Alu 7 307 -5 927 230 67 60 chr15 3752329 3752458 -81943296 + MLT1E1 LTR MaLR 417 544 -49 1622 191 11 4 chr15 3752458 3752735 -81943019 + AluJo SINE Alu 1 279 -33 2210 137 34 0 chr15 3752735 3753086 -81942668 + THE1B LTR MaLR 2 364 0 927 230 67 60 chr15 3753086 3753120 -81942634 + MLT1E1 LTR MaLR 543 585 -8 215 59 0 29 chr15 3753317 3753351 -81942403 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 2282 86 3 0 chr15 3753461 3753751 -81942003 + AluSc SINE Alu 1 291 -18 2039 93 117 11 chr15 3753899 3754345 -81941409 - LTR14B LTR ERVK 0 608 1 865 264 117 39 chr15 3754465 3754901 -81940853 + LTR41 LTR ERVL 1 470 -303 233 227 0 53 chr15 3754958 3755033 -81940721 + LTR41 LTR ERVL 693 763 -10 282 261 67 52 chr15 3755352 3755486 -81940268 + ERVL LTR ERVL 351 486 -5278 1481 176 14 21 chr15 3755978 3756267 -81939487 + AluJb SINE Alu 12 298 -14 318 177 0 0 chr15 3756271 3756333 -81939421 - L1 LINE L1 -1676 4470 4409 334 232 21 21 chr15 3756466 3756561 -81939193 + ERVL LTR ERVL 1548 1642 -3843 895 260 92 0 chr15 3756632 3756859 -81938895 + MER82 DNA MER2_type 405 652 -1 4983 73 52 9 chr15 3757637 3758297 -81937457 - LTR12 LTR ERV1 0 688 1 198 0 0 0 chr15 3758574 3758596 -81937158 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1748 159 3 20 chr15 3758905 3759206 -81936548 + AluJb SINE Alu 1 296 -16 21 0 0 0 chr15 3759272 3759293 -81936461 + AT_rich Low_complexity Low_complexity 1 21 0 2325 112 0 0 chr15 3759526 3759838 -81935916 + AluSx SINE Alu 1 312 0 1881 100 126 0 chr15 3759848 3760119 -81935635 + AluSx SINE Alu 1 305 -7 1228 127 0 0 chr15 3760119 3760285 -81935469 + AluSg/x SINE Alu 134 299 -13 2120 98 0 4 chr15 3760417 3760692 -81935062 + AluSx SINE Alu 30 303 -9 1172 282 59 16 chr15 3760797 3761513 -81934241 - L1MEc LINE L1 -4837 1276 673 5638 117 6 12 chr15 3761514 3762372 -81933382 + L1PA13 LINE L1 5307 6159 -4 544 228 0 8 chr15 3762620 3762747 -81933007 + AluY SINE Alu 180 305 -6 328 325 26 0 chr15 3762952 3763069 -81932685 + HsTC2 DNA Tc2 35 154 -1744 * 962 238 97 25 chr15 3763067 3763500 -81932254 + HsTC2 DNA Tc2 1234 1873 -25 257 287 56 9 chr15 3763571 3763679 -81932075 - MIR SINE MIR -31 231 119 756 166 30 4 chr15 3764257 3764421 -81931333 - MSTA LTR MaLR -208 167 1 2076 130 7 0 chr15 3764521 3764821 -81930933 + AluSc SINE Alu 1 302 -7 209 33 33 0 chr15 3764899 3764929 -81930825 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 837 181 87 0 chr15 3764936 3765085 -81930669 + AluJo SINE Alu 127 288 -24 23 0 0 0 chr15 3765085 3765108 -81930646 + AT_rich Low_complexity Low_complexity 1 23 0 2585 172 59 12 chr15 3765170 3765676 -81930078 - L1MB3 LINE L1 -2 6181 5652 453 206 18 100 chr15 3765676 3765846 -81929908 - AluSg/x SINE Alu -19 290 135 495 175 0 0 chr15 3766257 3766377 -81929377 + G-rich Low_complexity Low_complexity 1 120 0 1209 228 54 33 chr15 3766532 3766631 -81929123 + MER58B DNA MER1_type 1 96 -2324 2375 97 3 0 chr15 3766631 3766931 -81928823 + AluSx SINE Alu 1 301 -11 1209 228 54 33 chr15 3766931 3767165 -81928589 + MER58B DNA MER1_type 96 341 0 1706 174 14 3 chr15 3767188 3767470 -81928284 - AluSx SINE Alu -27 285 1 1898 146 3 3 chr15 3767604 3767898 -81927856 + AluSx SINE Alu 2 295 -17 2235 102 10 3 chr15 3768450 3768743 -81927011 + AluSg SINE Alu 1 295 -15 1200 143 104 17 chr15 3769098 3769328 -81926426 - MSTA LTR MaLR 0 428 179 2183 127 3 0 chr15 3769460 3769760 -81925994 + AluSq SINE Alu 1 301 -12 1665 197 14 57 chr15 3769806 3769876 -81925878 + MER67A LTR ERV1 1 72 -471 2209 110 3 0 chr15 3769876 3770175 -81925579 + AluSq SINE Alu 2 301 -12 1665 197 14 57 chr15 3770175 3770526 -81925228 + MER67A LTR ERV1 72 404 -139 1803 149 6 19 chr15 3770544 3770860 -81924894 - AluSx SINE Alu 0 312 1 453 158 13 0 chr15 3770862 3770938 -81924816 - FLAM_A SINE Alu -34 108 32 868 182 7 7 chr15 3770965 3771119 -81924635 + MER67A LTR ERV1 390 543 0 1584 119 61 61 chr15 3771350 3771496 -81924258 - AluJb SINE Alu -17 295 147 2158 102 3 33 chr15 3771496 3771801 -81923953 - AluSg SINE Alu -12 298 3 1584 119 61 61 chr15 3771801 3771931 -81923823 - AluJb SINE Alu -164 148 19 24 41 0 20 chr15 3772213 3772250 -81923504 + AT_rich Low_complexity Low_complexity 1 38 -10 1476 117 167 8 chr15 3772250 3772507 -81923247 - AluSc SINE Alu -1 298 1 24 41 0 20 chr15 3772507 3772518 -81923236 + AT_rich Low_complexity Low_complexity 38 48 0 831 244 151 26 chr15 3773109 3773454 -81922300 + L1MC4 LINE L1 6493 6880 -1162 1360 196 109 7 chr15 3773502 3773778 -81921976 + AluJo SINE Alu 1 304 -8 358 175 0 0 chr15 3773778 3773835 -81921919 + L1MA5A LINE L1 6043 6099 -198 3323 137 61 4 chr15 3773870 3774425 -81921329 - L1MA5 LINE L1 -319 5981 5395 437 312 12 0 chr15 3774475 3774645 -81921109 + L1MC4 LINE L1 7454 7625 -417 231 36 0 0 chr15 3774954 3774982 -81920772 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 312 27 0 0 chr15 3774981 3775018 -81920736 + (GA)n Simple_repeat Simple_repeat 2 38 0 784 197 98 38 chr15 3775018 3775201 -81920553 - AluJo SINE Alu -34 278 85 1101 181 236 57 chr15 3775323 3775510 -81920244 + LTR48 LTR ERV1 1 153 -634 2255 106 3 3 chr15 3775510 3775812 -81919942 + AluSg SINE Alu 1 302 -8 1101 181 236 57 chr15 3775812 3776027 -81919727 + LTR48 LTR ERV1 153 475 -312 924 239 63 28 chr15 3776027 3776282 -81919472 + LTR48B LTR ERV1 381 644 0 183 309 147 0 chr15 3776334 3776402 -81919352 - L2 LINE L2 -44 3269 3192 2480 85 0 0 chr15 3776601 3776908 -81918846 - AluSg SINE Alu -3 307 1 1590 242 57 11 chr15 3776908 3777362 -81918392 - L1MC3 LINE L1 -426 7359 6885 643 193 39 8 chr15 3777367 3777514 -81918240 - MSTC LTR MaLR -244 152 1 427 253 0 108 chr15 3777864 3777939 -81917815 + MER54A LTR ERVL 1 83 -818 1961 128 20 14 chr15 3777939 3778235 -81917519 + AluSx SINE Alu 1 298 -14 427 253 0 108 chr15 3778235 3778353 -81917401 + MER54A LTR ERVL 83 173 -728 215 228 18 0 chr15 3778503 3778560 -81917194 - MIR SINE MIR -64 198 141 2229 121 0 7 chr15 3778723 3779030 -81916724 + AluSx SINE Alu 1 305 -7 363 260 160 35 chr15 3779086 3779317 -81916437 - L1M4 LINE L1 -1125 5021 4762 23 33 0 0 chr15 3779887 3779917 -81915837 + AT_rich Low_complexity Low_complexity 1 30 0 483 163 39 28 chr15 3779994 3780172 -81915582 + (TA)n Simple_repeat Simple_repeat 1 180 0 2528 34 7 10 chr15 3780253 3780550 -81915204 + AluY SINE Alu 2 297 -14 2291 116 160 2 chr15 3780550 3780956 -81914798 - MER31A LTR ERV1 -15 470 1 570 195 122 12 chr15 3781484 3781648 -81914106 - MER5A DNA MER1_type 0 189 8 2189 102 0 41 chr15 3783019 3783334 -81912420 + AluSq SINE Alu 1 302 -11 213 281 49 12 chr15 3783339 3783421 -81912333 - MIR SINE MIR -146 116 32 2208 124 0 13 chr15 3783993 3784308 -81911446 - AluSx SINE Alu -1 311 1 326 369 0 0 chr15 3784312 3784461 -81911293 - L1ME LINE L1 -402 5768 5620 1034 268 119 28 chr15 3784467 3784937 -81910817 + L1ME3A LINE L1 5528 6040 -130 321 26 0 0 chr15 3784979 3785017 -81910737 + (TG)n Simple_repeat Simple_repeat 2 39 0 420 52 0 0 chr15 3785026 3785084 -81910670 - Alu SINE Alu -5 307 250 377 190 53 0 chr15 3785085 3785173 -81910581 - AluSq/x SINE Alu -160 143 65 502 278 87 80 chr15 3785173 3785687 -81910067 - LTR48B LTR ERV1 0 633 20 1074 175 10 35 chr15 3785688 3785888 -81909866 - AluJb SINE Alu -115 197 3 812 143 32 0 chr15 3786433 3786559 -81909195 + FLAM_C SINE Alu 1 130 -3 1129 185 138 31 chr15 3786725 3786847 -81908907 - AluJo SINE Alu -31 281 173 2283 69 24 0 chr15 3786847 3787135 -81908619 - AluY SINE Alu -16 295 1 1129 185 138 31 chr15 3787135 3787266 -81908488 - AluJo SINE Alu -139 173 1 33 43 0 0 chr15 3787353 3787400 -81908354 + AT_rich Low_complexity Low_complexity 1 47 0 397 248 64 40 chr15 3787468 3787593 -81908161 - MER94 DNA DNA -5 129 2 273 183 139 52 chr15 3787775 3787827 -81907927 - L1MC4 LINE L1 0 8042 7996 1700 166 0 45 chr15 3787827 3788135 -81907619 + AluJo SINE Alu 4 297 -15 273 183 139 52 chr15 3788135 3788197 -81907557 - L1MC4 LINE L1 -46 7996 7918 1718 201 0 3 chr15 3788225 3788523 -81907231 - AluJo SINE Alu -15 297 1 345 24 0 0 chr15 3788578 3788620 -81907134 + (T)n Simple_repeat Simple_repeat 1 42 0 898 106 0 15 chr15 3788756 3788888 -81906866 + AluSg/x SINE Alu 176 305 -7 2241 108 0 0 chr15 3788979 3789276 -81906478 + AluSg SINE Alu 1 297 -13 1202 184 43 71 chr15 3789282 3789608 -81906146 - LTR48B-int LTR ERV1 -55 4881 4565 329 253 0 0 chr15 3789582 3789661 -81906093 - LTR48B-int LTR ERV1 -941 3930 3852 * 1261 223 129 42 chr15 3789689 3789865 -81905889 - MER39 LTR ERV1 0 707 548 1747 160 3 31 chr15 3789865 3790183 -81905571 - AluJb SINE Alu -3 309 1 1261 223 129 42 chr15 3790183 3790392 -81905362 - MER39 LTR ERV1 -159 548 288 507 192 123 68 chr15 3790574 3790793 -81904961 - MER31-int LTR ERV1 -4160 776 546 * 680 228 98 23 chr15 3790786 3791001 -81904753 - MER31-int LTR ERV1 -4505 431 201 2461 67 3 3 chr15 3791066 3791363 -81904391 + AluY SINE Alu 1 297 -14 733 111 0 0 chr15 3791395 3791494 -81904260 - AluJ/FLAM SINE Alu -212 100 2 2215 112 0 0 chr15 3791522 3791808 -81903946 + AluSg SINE Alu 1 286 -24 546 197 21 42 chr15 3791856 3791998 -81903756 + MLT1A1 LTR MaLR 227 365 0 1987 153 38 3 chr15 3791998 3792339 -81903415 + MLT1A1-int LTR MaLR 1 353 -1382 770 203 38 55 chr15 3792363 3792600 -81903154 - PABL_B LTR ERV1 -66 601 369 314 319 64 29 chr15 3793688 3793892 -81901862 - PABL_B LTR ERV1 -456 211 1 988 197 53 5 chr15 3793892 3794080 -81901674 + MLT-int LTR MaLR 348 544 -1191 896 157 54 0 chr15 3794083 3794230 -81901524 + FRAM SINE Alu 1 155 -11 2207 91 0 11 chr15 3794235 3794539 -81901215 - AluSg SINE Alu 0 301 1 4792 215 24 76 chr15 3794908 3795903 -81899851 + MLT1A1-int LTR MaLR 512 1428 -307 639 186 59 0 chr15 3795903 3796021 -81899733 - FLAM_A SINE Alu -8 125 1 4792 215 24 76 chr15 3796021 3796295 -81899459 + MLT1A1-int LTR MaLR 1428 1715 -20 828 232 22 130 chr15 3796318 3796685 -81899069 + MLT1A1 LTR MaLR 1 321 -44 2161 123 3 0 chr15 3796685 3796985 -81898769 - AluSx SINE Alu -11 301 1 828 232 22 130 chr15 3796985 3797026 -81898728 + MLT1A1 LTR MaLR 321 365 0 2092 122 0 17 chr15 3797106 3797432 -81898322 + AluSx SINE Alu 1 312 0 2965 159 32 32 chr15 3797435 3798000 -81897754 - MER34B LTR ERV1 0 565 1 366 241 71 27 chr15 3798000 3798112 -81897642 - MER31A-int LTR ERV1 -4648 288 172 741 124 20 92 chr15 3798159 3798312 -81897442 + FLAM_C SINE Alu 2 143 0 514 274 20 26 chr15 3798316 3798469 -81897285 - MER31A-int LTR ERV1 -4770 166 15 2452 141 43 56 chr15 3798491 3798857 -81896897 - MER31A LTR ERV1 -7 478 118 2285 96 0 7 chr15 3798857 3799170 -81896584 - AluSg SINE Alu 0 310 1 2452 141 43 56 chr15 3799170 3799287 -81896467 - MER31A LTR ERV1 -367 118 1 2215 93 38 3 chr15 3799713 3800004 -81895750 - AluSg SINE Alu -9 301 1 255 161 0 0 chr15 3800086 3800142 -81895612 + (CAGAGA)n Simple_repeat Simple_repeat 3 58 0 800 191 13 7 chr15 3800171 3800323 -81895431 + AluJb SINE Alu 156 308 -4 663 125 22 125 chr15 3800483 3800619 -81895135 - LTR12 LTR ERV1 -234 480 359 245 280 13 0 chr15 3800620 3800695 -81895059 - LTR30 LTR ERV1 -99 623 548 1570 118 122 4 chr15 3800698 3800953 -81894801 - LTR12 LTR ERV1 -429 285 1 1004 183 17 74 chr15 3803014 3803095 -81892659 - AluSx SINE Alu -95 217 133 2240 84 3 7 chr15 3803095 3803407 -81892347 - AluSx SINE Alu 0 311 1 1004 183 17 74 chr15 3803407 3803554 -81892200 - AluSx SINE Alu -179 133 1 1931 226 52 21 chr15 3803560 3804083 -81891671 - MER74B LTR ERVL -82 540 2 2399 170 38 57 chr15 3804086 3804398 -81891356 - L1M3 LINE L1 -560 5623 5307 192 97 0 0 chr15 3804398 3804429 -81891325 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1960 147 7 0 chr15 3804429 3804710 -81891044 - AluSx SINE Alu -29 283 1 2399 170 38 57 chr15 3804710 3804761 -81890993 - L1M3 LINE L1 -875 5308 5258 2027 166 0 0 chr15 3804761 3805068 -81890686 - AluSx SINE Alu -5 307 1 2399 170 38 57 chr15 3805068 3805541 -81890213 - L1M3 LINE L1 -925 5258 4793 240 59 0 0 chr15 3805727 3805761 -81889993 + (TG)n Simple_repeat Simple_repeat 1 34 0 867 196 6 30 chr15 3805783 3805951 -81889803 - MLT2D LTR ERVL -54 360 197 2163 123 20 0 chr15 3805952 3806254 -81889500 - AluSx SINE Alu -4 308 1 12638 184 39 20 chr15 3806255 3806736 -81889018 - ERVL LTR ERVL -303 5461 4991 2167 113 0 3 chr15 3806736 3807055 -81888699 - AluSg SINE Alu 0 310 1 12638 184 39 20 chr15 3807055 3808788 -81886966 - ERVL LTR ERVL -773 4991 3198 2195 135 0 6 chr15 3808788 3809099 -81886655 - AluSx SINE Alu -3 309 1 12638 184 39 20 chr15 3809099 3809224 -81886530 - ERVL LTR ERVL -2566 3198 3077 544 258 67 16 chr15 3809208 3809402 -81886352 - ERVL LTR ERVL -5345 419 216 * 848 107 90 0 chr15 3809404 3809526 -81886228 + AluSq/x SINE Alu 1 133 -180 272 264 86 71 chr15 3809537 3809677 -81886077 - ERVL LTR ERVL -5621 143 2 1912 179 42 32 chr15 3809685 3810088 -81885666 - MLT2D LTR ERVL -7 407 1 940 203 81 0 chr15 3810088 3810285 -81885469 - MER58B DNA MER1_type -29 312 100 216 0 0 0 chr15 3810321 3810345 -81885409 + (A)n Simple_repeat Simple_repeat 1 24 0 876 184 0 7 chr15 3810390 3810542 -81885212 + FAM SINE Alu 20 170 -15 434 270 20 7 chr15 3811087 3811239 -81884515 + MIR SINE MIR 2 155 -107 1046 175 0 0 chr15 3811240 3811406 -81884348 + AluJb SINE Alu 137 302 -10 1618 199 3 27 chr15 3811434 3811735 -81884019 - AluJo SINE Alu -5 307 14 32 26 0 0 chr15 3811754 3811793 -81883961 + AT_rich Low_complexity Low_complexity 1 39 0 200 235 59 0 chr15 3811823 3811874 -81883880 + MIR SINE MIR 184 237 -25 2285 114 3 0 chr15 3812328 3812634 -81883120 + AluSg SINE Alu 1 307 -3 696 35 0 0 chr15 3812926 3813012 -81882742 - L1PA3 LINE L1 0 6155 6070 207 0 0 0 chr15 3813079 3813102 -81882652 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2188 101 0 11 chr15 3813105 3813391 -81882363 - AluSc SINE Alu -26 283 1 1450 183 101 6 chr15 3813391 3813729 -81882025 - L1MC3 LINE L1 -23 7762 7393 * 3294 166 50 100 chr15 3813726 3813991 -81881763 - L1MB7 LINE L1 0 6184 5907 2470 100 0 0 chr15 3813991 3814302 -81881452 - AluSx SINE Alu -1 311 1 3294 166 50 100 chr15 3814302 3814349 -81881405 - L1MB7 LINE L1 -277 5907 5859 1723 189 0 3 chr15 3814349 3814650 -81881104 + AluJo SINE Alu 2 301 -11 3294 166 50 100 chr15 3814650 3814796 -81880958 - L1MB7 LINE L1 -325 5859 5707 1524 199 46 26 chr15 3814796 3815102 -81880652 - AluJo SINE Alu 0 312 1 3294 166 50 100 chr15 3815102 3815162 -81880592 - L1MB7 LINE L1 -477 5707 5646 2278 95 0 0 chr15 3815162 3815447 -81880307 - AluSg SINE Alu -17 293 9 3294 166 50 100 chr15 3815447 3815521 -81880233 - L1MB7 LINE L1 -538 5646 5570 1756 163 16 10 chr15 3815521 3815828 -81879926 - AluJo SINE Alu -3 309 1 1889 130 13 23 chr15 3815834 3816142 -81879612 - AluSx SINE Alu -7 305 1 3294 166 50 100 chr15 3816142 3816493 -81879261 - L1MB7 LINE L1 -619 5565 5297 2055 146 7 0 chr15 3816493 3816787 -81878967 - AluSx SINE Alu -16 296 1 3294 166 50 100 chr15 3816787 3817016 -81878738 - L1MB7 LINE L1 -887 5297 5058 304 231 27 7 chr15 3817016 3817163 -81878591 + (TA)n Simple_repeat Simple_repeat 2 151 0 270 133 0 0 chr15 3817191 3817236 -81878518 - L1MB7 LINE L1 -1144 5002 4958 29 28 0 0 chr15 3817701 3817737 -81878017 + AT_rich Low_complexity Low_complexity 1 36 0 302 254 97 6 chr15 3817775 3817940 -81877814 + L1MC3 LINE L1 7444 7623 -162 409 276 91 25 chr15 3818007 3818250 -81877504 - MIR SINE MIR -2 260 2 2250 110 3 0 chr15 3818301 3818600 -81877154 - AluSc SINE Alu -9 300 1 320 187 13 27 chr15 3818673 3818748 -81877006 - MER116 DNA Mariner -6 74 1 564 263 10 57 chr15 3822415 3822609 -81873145 + MIR3 SINE MIR 15 199 -9 521 249 171 63 chr15 3823745 3824206 -81871548 + MLT2B1 LTR ERVL 2 512 -8 371 123 99 12 chr15 3824418 3824499 -81871255 - MER20B DNA MER1_type -71 712 625 2583 170 236 15 chr15 3824607 3825320 -81870434 + MER52C LTR ERV1 409 1278 0 1198 204 41 44 chr15 3825498 3825885 -81869869 + L1MC/D LINE L1 5288 5680 -688 210 256 26 64 chr15 3826318 3826396 -81869358 - MER5A DNA MER1_type -6 183 109 1787 129 48 3 chr15 3826920 3827230 -81868524 - L1MA6 LINE L1 0 6300 5977 225 94 0 0 chr15 3827234 3827266 -81868488 + (T)n Simple_repeat Simple_repeat 1 32 0 5265 48 5 1 chr15 3828780 3829433 -81866321 + L1PA5 LINE L1 5500 6154 0 193 322 44 0 chr15 3829685 3829775 -81865979 - L2 LINE L2 -4 3309 3216 345 285 64 121 chr15 3830132 3830381 -81865373 - L2 LINE L2 -6 3266 3032 287 281 0 0 chr15 3830398 3830462 -81865292 + L2 LINE L2 3201 3264 -8 25 0 0 0 chr15 3830577 3830602 -81865152 + AT_rich Low_complexity Low_complexity 1 25 0 1192 165 89 8 chr15 3831051 3831287 -81864467 - AluJb SINE Alu -18 294 40 668 201 63 0 chr15 3831305 3831479 -81864275 - L1M4 LINE L1 -733 5441 5257 318 258 11 84 chr15 3831495 3831673 -81864081 - L1MA10 LINE L1 -13 6321 6157 323 254 127 5 chr15 3831679 3831876 -81863878 - L1M4 LINE L1 -870 5276 5056 1720 176 28 3 chr15 3832772 3833062 -81862692 - AluJo SINE Alu -15 297 1 21 36 0 0 chr15 3833139 3833167 -81862587 + AT_rich Low_complexity Low_complexity 1 28 0 2311 113 0 0 chr15 3833183 3833484 -81862270 - AluSg SINE Alu -9 301 1 258 268 113 12 chr15 3833515 3833683 -81862071 + L1MC/D LINE L1 5706 5890 -1918 21 36 0 0 chr15 3833884 3833912 -81861842 + AT_rich Low_complexity Low_complexity 1 28 0 22 106 0 0 chr15 3836012 3836097 -81859657 + AT_rich Low_complexity Low_complexity 1 85 0 1230 113 0 0 chr15 3836608 3836768 -81858986 - AluSx SINE Alu -150 162 3 765 143 54 0 chr15 3836917 3837064 -81858690 + L1MB7 LINE L1 5696 5850 -334 622 160 84 25 chr15 3837288 3837407 -81858347 - FLAM_C SINE Alu -6 127 2 1535 193 10 3 chr15 3837735 3838030 -81857724 + AluJo SINE Alu 1 297 -15 446 141 0 81 chr15 3838148 3838247 -81857507 + FLAM_A SINE Alu 40 130 -12 2070 116 0 7 chr15 3839708 3839993 -81855761 - AluSx SINE Alu -29 283 1 691 208 104 22 chr15 3840003 3840186 -81855568 + Tigger3(Golem) DNA MER2_type 2811 3008 -21 2192 91 0 39 chr15 3840197 3840504 -81855250 - AluSq SINE Alu -18 295 1 734 102 68 0 chr15 3841422 3841540 -81854214 - AluSx SINE Alu -9 301 176 847 117 0 39 chr15 3841540 3841668 -81854086 - AluSx SINE Alu -189 123 1 405 248 44 9 chr15 3841902 3842015 -81853739 + MER106A DNA MER1_type 1 117 -119 1992 115 17 3 chr15 3844162 3844450 -81851304 + AluSq SINE Alu 1 292 -21 1860 122 83 17 chr15 3845538 3845826 -81849928 - AluSp SINE Alu -6 307 1 2062 130 10 0 chr15 3846486 3846786 -81848968 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr15 3846794 3846815 -81848939 + AT_rich Low_complexity Low_complexity 1 21 0 594 280 115 85 chr15 3847285 3847956 -81847798 - MER21B LTR ERV1 -149 714 24 2239 100 0 7 chr15 3848590 3848889 -81846865 + AluSx SINE Alu 3 299 -13 1118 165 0 0 chr15 3848889 3849059 -81846695 + AluSg/x SINE Alu 134 303 -9 26 0 0 0 chr15 3849550 3849576 -81846178 + AT_rich Low_complexity Low_complexity 1 26 0 2165 116 3 0 chr15 3850365 3850659 -81845095 - AluSq SINE Alu -18 295 1 586 259 27 22 chr15 3851043 3851228 -81844526 + MER58A DNA MER1_type 33 218 -6 1989 131 3 3 chr15 3851528 3851819 -81843935 + AluSx SINE Alu 1 291 -21 36 23 0 0 chr15 3852753 3852796 -81842958 + AT_rich Low_complexity Low_complexity 1 43 0 654 69 129 0 chr15 3852866 3852967 -81842787 - MER85 DNA T2_type -25 114 1 444 275 10 28 chr15 3852967 3853154 -81842600 - L1MB7 LINE L1 -3 6181 5994 2211 117 0 0 chr15 3853205 3853503 -81842251 + AluSx SINE Alu 1 298 -14 2493 68 13 0 chr15 3855368 3855675 -81840079 + AluY SINE Alu 1 311 0 2115 117 0 0 chr15 3856228 3856530 -81839224 - AluSx SINE Alu 0 302 1 248 283 22 33 chr15 3857458 3857550 -81838204 + L2 LINE L2 3221 3311 -2 1349 186 67 22 chr15 3857575 3857844 -81837910 - AluJo SINE Alu -29 283 3 1858 108 0 34 chr15 3858091 3858388 -81837366 + AluSx SINE Alu 19 305 -7 2058 142 14 0 chr15 3858476 3858772 -81836982 + AluSx SINE Alu 1 300 -12 207 0 0 0 chr15 3859744 3859767 -81835987 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 332 26 0 0 chr15 3859766 3859804 -81835950 + (TG)n Simple_repeat Simple_repeat 1 38 0 1318 153 61 4 chr15 3860342 3860570 -81835184 - AluSg SINE Alu -69 241 1 315 161 0 0 chr15 3861799 3861855 -81833899 + (TG)n Simple_repeat Simple_repeat 2 57 0 548 263 111 12 chr15 3862434 3862605 -81833149 - MER5A DNA MER1_type 0 189 2 22 56 0 0 chr15 3862856 3862892 -81832862 + AT_rich Low_complexity Low_complexity 1 36 0 212 402 0 0 chr15 3863977 3864059 -81831695 + L2 LINE L2 3214 3295 -18 201 240 0 0 chr15 3867912 3867987 -81827767 + (TA)n Simple_repeat Simple_repeat 2 76 0 21 36 0 0 chr15 3868444 3868472 -81827282 + AT_rich Low_complexity Low_complexity 1 28 0 469 283 40 35 chr15 3869330 3869528 -81826226 - MER8 DNA MER2_type -40 199 1 25 31 0 0 chr15 3869911 3869943 -81825811 + AT_rich Low_complexity Low_complexity 1 32 0 2286 86 0 0 chr15 3869994 3870285 -81825469 + AluSg SINE Alu 1 291 -19 228 151 38 0 chr15 3870895 3870948 -81824806 - MER109 Unknown Unknown -1442 990 936 2283 88 0 16 chr15 3871953 3872258 -81823496 + AluSq SINE Alu 1 300 -13 3784 97 122 5 chr15 3874195 3874785 -81820969 - PABL_A LTR ERV1 -1 659 1 295 231 115 0 chr15 3875459 3875537 -81820217 - MLT1G LTR MaLR -7 583 497 2021 106 46 13 chr15 3875824 3876127 -81819627 + AluSq SINE Alu 1 313 0 325 275 90 47 chr15 3877652 3877863 -81817891 - L1M4 LINE L1 -1426 4720 4501 2247 256 57 31 chr15 3878607 3879221 -81816533 - L1 LINE L1 -1278 4868 4222 1645 143 94 0 chr15 3879221 3879487 -81816267 - AluSq SINE Alu -22 291 1 2247 256 57 31 chr15 3879487 3879764 -81815990 - L1 LINE L1 -1924 4222 3954 799 266 186 20 chr15 3879765 3879914 -81815840 - L1 LINE L1 -2449 3697 3574 2416 70 0 3 chr15 3879914 3880216 -81815538 - AluY SINE Alu -10 301 1 799 266 186 20 chr15 3880216 3881008 -81814746 - L1 LINE L1 -2572 3574 2600 1720 117 0 0 chr15 3881032 3881262 -81814492 - AluSg SINE Alu -29 281 52 1080 173 42 35 chr15 3881368 3881628 -81814126 + AluSx SINE Alu 51 312 0 1848 100 126 0 chr15 3881638 3881909 -81813845 + AluSx SINE Alu 1 305 -7 1234 121 0 0 chr15 3881909 3882075 -81813679 + AluSg/x SINE Alu 134 299 -13 2195 106 0 0 chr15 3882175 3882468 -81813286 + AluSg SINE Alu 3 295 -15 1195 188 50 67 chr15 3882468 3882800 -81812954 - PABL_B-int LTR ERV1 -44 4892 4565 322 253 0 0 chr15 3882774 3882853 -81812901 - PABL_B-int LTR ERV1 -941 3930 3852 * 1215 228 148 40 chr15 3882881 3883057 -81812697 - MER39 LTR ERV1 0 707 552 1729 160 3 31 chr15 3883057 3883375 -81812379 - AluJb SINE Alu -3 309 1 1215 228 148 40 chr15 3883375 3883602 -81812152 - MER39 LTR ERV1 -155 552 260 529 188 127 66 chr15 3883766 3883979 -81811775 - PABL_B-int LTR ERV1 -4160 776 551 * 679 228 98 23 chr15 3883978 3884193 -81811561 - PABL_B-int LTR ERV1 -4505 431 201 2505 60 0 3 chr15 3884258 3884556 -81811198 + AluY SINE Alu 1 297 -14 720 110 0 0 chr15 3884588 3884688 -81811066 - AluJ/FLAM SINE Alu -212 100 1 2347 110 0 0 chr15 3884715 3885025 -81810729 + AluSg SINE Alu 1 310 0 540 197 21 42 chr15 3885050 3885192 -81810562 + MLT1A1 LTR MaLR 227 365 0 1941 153 38 3 chr15 3885192 3885533 -81810221 + MLT1A1-int LTR MaLR 1 353 -1382 727 207 38 55 chr15 3885552 3885789 -81809965 - PABL_B LTR ERV1 -66 601 369 307 319 64 29 chr15 3886880 3887084 -81808670 - PABL_B LTR ERV1 -456 211 1 960 198 53 5 chr15 3887084 3887271 -81808483 + MLT-int LTR MaLR 348 543 -1192 961 146 53 0 chr15 3887271 3887422 -81808332 + FRAM SINE Alu 1 155 -21 2184 88 0 11 chr15 3887427 3887731 -81808023 - AluSg SINE Alu 0 301 1 4708 216 20 76 chr15 3888116 3889095 -81806659 + MLT1A1-int LTR MaLR 532 1427 -308 627 186 59 0 chr15 3889095 3889213 -81806541 - FLAM_A SINE Alu -8 125 1 4708 216 20 76 chr15 3889213 3889487 -81806267 + MLT1A1-int LTR MaLR 1427 1715 -20 856 247 20 112 chr15 3889510 3889877 -81805877 + MLT1A1 LTR MaLR 1 424 -33 1301 107 0 0 chr15 3889877 3890045 -81805709 - AluSg/x SINE Alu -11 301 134 363 65 0 0 chr15 3890046 3890092 -81805662 - Alu SINE Alu -257 46 1 484 265 76 0 chr15 3890113 3890336 -81805418 - L1M4 LINE L1 -3563 2819 2580 3686 198 75 44 chr15 3890347 3890446 -81805308 - L1M4 LINE L1 -4272 2112 2018 2310 74 0 3 chr15 3890446 3890731 -81805023 - AluY SINE Alu -27 284 1 3686 198 75 44 chr15 3890731 3890888 -81804866 - L1M4 LINE L1 -4366 2018 1867 1463 205 0 33 chr15 3890888 3891191 -81804563 + AluJo SINE Alu 1 293 -19 3686 198 75 44 chr15 3891191 3892090 -81803664 - L1M4 LINE L1 -4517 1867 920 1053 234 75 67 chr15 3892091 3892479 -81803275 - L1M4 LINE L1 -5980 404 14 1290 216 40 7 chr15 3892483 3892784 -81802970 - AluJo SINE Alu -1 311 1 940 253 129 3 chr15 3892863 3893234 -81802520 - L1MB4 LINE L1 -1 6179 5762 347 234 54 18 chr15 3893403 3893514 -81802240 - L1MB4 LINE L1 -479 5701 5587 977 242 104 4 chr15 3893794 3894063 -81801691 + AluJo SINE Alu 1 296 -6 21 57 0 0 chr15 3895164 3895199 -81800555 + AT_rich Low_complexity Low_complexity 1 35 0 270 227 93 0 chr15 3895518 3895615 -81800139 - L1MC5 LINE L1 -886 7075 6970 1711 163 10 24 chr15 3895854 3896149 -81799605 - AluSx SINE Alu -19 293 3 22 0 0 54 chr15 3896156 3896174 -81799580 + AT_rich Low_complexity Low_complexity 1 18 -17 2094 132 6 0 chr15 3896174 3896485 -81799269 - AluSp SINE Alu 0 313 1 22 0 0 54 chr15 3896485 3896503 -81799251 + AT_rich Low_complexity Low_complexity 18 35 0 1814 161 0 7 chr15 3896543 3896828 -81798926 - AluSx SINE Alu -19 293 11 746 112 19 0 chr15 3897287 3897394 -81798360 + BC200 scRNA scRNA 12 120 -80 491 300 29 40 chr15 3898571 3898844 -81796910 + L1MC/D LINE L1 5335 5604 -2204 2066 147 0 3 chr15 3899390 3899697 -81796057 + AluSx SINE Alu 1 306 -6 1957 128 7 0 chr15 3900869 3901143 -81794611 + AluSg SINE Alu 12 287 -23 768 247 12 18 chr15 3905725 3905895 -81789859 - MER58A DNA MER1_type -55 169 1 294 238 112 93 chr15 3906544 3906715 -81789039 - L1MC/D LINE L1 -2154 5654 5477 2249 95 10 3 chr15 3906715 3907009 -81788745 + AluSx SINE Alu 1 296 -16 294 238 112 93 chr15 3907009 3907051 -81788703 - L1MC/D LINE L1 -2331 5477 5437 1296 279 109 42 chr15 3907262 3908145 -81787609 - L1MD3 LINE L1 -6 8036 7103 390 356 169 12 chr15 3910524 3911010 -81784744 - L2 LINE L2 -746 2568 2007 2408 91 0 0 chr15 3911701 3911998 -81783756 + AluSq SINE Alu 1 297 -16 585 262 122 67 chr15 3914560 3915274 -81780480 - L1MDa LINE L1 -4471 1609 857 1340 173 39 27 chr15 3915276 3915536 -81780218 - AluJo SINE Alu -7 305 43 383 254 123 9 chr15 3915582 3915810 -81779944 - L1MDa LINE L1 -5253 817 564 403 217 15 152 chr15 3915817 3916015 -81779739 - MER20 DNA MER1_type -5 214 44 639 242 4 78 chr15 3916120 3916364 -81779390 - L1MDa LINE L1 -5525 545 320 524 321 29 0 chr15 3916369 3916578 -81779176 - L1MDa LINE L1 -5846 224 10 202 231 88 0 chr15 3917819 3917910 -81777844 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 727 249 41 30 chr15 3918264 3918461 -81777293 - MER58A DNA MER1_type 0 224 26 252 228 18 53 chr15 3919195 3919309 -81776445 + L1ME LINE L1 5311 5420 -883 24 32 0 0 chr15 3919336 3919367 -81776387 + AT_rich Low_complexity Low_complexity 1 31 0 532 309 98 4 chr15 3919438 3919674 -81776080 + L1ME LINE L1 5552 5809 -312 36 62 0 0 chr15 3920001 3920065 -81775689 + AT_rich Low_complexity Low_complexity 1 64 0 21 57 0 0 chr15 3920187 3920222 -81775532 + AT_rich Low_complexity Low_complexity 1 35 0 1589 258 156 14 chr15 3921294 3922146 -81773608 + L1MC4 LINE L1 7067 8039 -3 851 204 196 8 chr15 3922319 3922574 -81773180 - L1MB7 LINE L1 -300 5884 5582 2480 83 0 16 chr15 3922724 3923037 -81772717 + AluY SINE Alu 1 308 -3 450 0 0 0 chr15 3923437 3923487 -81772267 + (TA)n Simple_repeat Simple_repeat 1 50 0 2087 114 4 0 chr15 3923756 3924036 -81771718 + AluSx SINE Alu 11 291 -21 63 26 0 0 chr15 3924356 3924433 -81771321 + AT_rich Low_complexity Low_complexity 1 77 0 758 181 0 30 chr15 3924608 3924741 -81771013 - FLAM_A SINE Alu -4 129 1 22 0 0 0 chr15 3924741 3924763 -81770991 + AT_rich Low_complexity Low_complexity 1 22 0 2127 87 72 0 chr15 3924901 3925177 -81770577 + AluSp SINE Alu 1 296 -17 191 35 0 35 chr15 3926143 3926172 -81769582 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1481 197 0 67 chr15 3926176 3926476 -81769278 - AluJo SINE Alu -31 281 2 1412 223 98 119 chr15 3926477 3926911 -81768843 - L1M4 LINE L1 -2428 4216 3774 424 328 8 0 chr15 3926911 3927036 -81768718 - FLAM_C SINE Alu -7 126 1 1412 223 98 119 chr15 3927036 3927833 -81767921 - L1M4 LINE L1 -2870 3774 2893 2530 65 0 0 chr15 3927833 3928127 -81767627 - AluY SINE Alu -17 294 1 1412 223 98 119 chr15 3928127 3928259 -81767495 - L1M4 LINE L1 -3751 2893 2760 1099 191 0 38 chr15 3928278 3928488 -81767266 - AluJo SINE Alu -27 285 84 537 254 106 39 chr15 3928502 3929631 -81766123 - L1M4 LINE L1 -3884 2762 1337 1126 146 3 3 chr15 3929680 3930018 -81765736 - L1PA15 LINE L1 -20 6145 5756 1837 175 47 57 chr15 3930019 3930560 -81765194 + MLT2A2 LTR ERVL 1 554 0 2347 139 70 32 chr15 3930560 3930887 -81764867 - L1PA15 LINE L1 -407 5759 5409 1792 151 43 0 chr15 3930887 3931186 -81764568 - AluSx SINE Alu 0 312 1 2347 139 70 32 chr15 3931186 3931385 -81764369 - L1PA15 LINE L1 -757 5409 5219 2121 187 22 11 chr15 3931421 3931751 -81764003 - L1M3 LINE L1 -514 5820 5482 2219 91 0 4 chr15 3931751 3932026 -81763728 - AluSq SINE Alu -39 274 1 2121 187 22 11 chr15 3932026 3932154 -81763600 - L1M3 LINE L1 -852 5482 5357 703 196 0 5 chr15 3932254 3932469 -81763285 + CT-rich Low_complexity Low_complexity 1 213 0 1054 231 30 41 chr15 3932499 3932767 -81762987 - AluJb SINE Alu -43 269 5 2004 239 62 13 chr15 3932783 3933466 -81762288 - L1M3 LINE L1 -895 5251 4536 566 121 9 0 chr15 3934135 3934251 -81761503 + (CA)n Simple_repeat Simple_repeat 2 118 0 348 64 0 0 chr15 3936950 3936997 -81758757 + (CA)n Simple_repeat Simple_repeat 2 48 0 243 0 0 0 chr15 3942305 3942332 -81753422 + (CA)n Simple_repeat Simple_repeat 2 28 0 318 204 0 0 chr15 3945015 3945123 -81750631 + (CA)n Simple_repeat Simple_repeat 1 108 0 230 284 0 0 chr15 3950517 3950584 -81745170 + (CA)n Simple_repeat Simple_repeat 2 68 0 297 131 0 0 chr15 3953215 3953276 -81742478 + (CA)n Simple_repeat Simple_repeat 2 62 0 297 0 0 0 chr15 3955852 3955885 -81739869 + (CA)n Simple_repeat Simple_repeat 1 33 0 201 182 0 0 chr15 3978236 3978269 -81717485 + T-rich Low_complexity Low_complexity 1 33 0 2111 141 14 0 chr15 3979383 3979680 -81716074 + AluSg SINE Alu 1 301 -9 1705 235 80 55 chr15 3979718 3980403 -81715351 - L1MDb LINE L1 -5045 1364 663 343 159 0 72 chr15 4030962 4031031 -81664723 + MER58 DNA MER1_type 2357 2420 0 1742 170 11 3 chr15 4031054 4031337 -81664417 - AluSx SINE Alu -27 285 1 1879 146 3 3 chr15 4031471 4031765 -81663989 + AluSx SINE Alu 2 295 -17 2216 102 10 3 chr15 4032317 4032610 -81663144 + AluSg SINE Alu 1 295 -15 2127 148 143 11 chr15 4032965 4033343 -81662411 - MSTA LTR MaLR 0 428 1 2060 130 7 0 chr15 4033443 4033743 -81662011 + AluSc SINE Alu 1 302 -7 209 33 33 0 chr15 4033821 4033851 -81661903 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 827 181 87 0 chr15 4033858 4034007 -81661747 + AluJo SINE Alu 127 288 -24 23 0 0 0 chr15 4034007 4034030 -81661724 + AT_rich Low_complexity Low_complexity 1 23 0 2674 166 58 42 chr15 4034092 4034595 -81661159 - L1MB3 LINE L1 -1 6182 5668 1885 125 0 54 chr15 4034595 4034908 -81660846 - AluSx SINE Alu -16 296 1 2674 166 58 42 chr15 4034908 4034958 -81660796 - L1MB3 LINE L1 -515 5668 5620 663 126 0 0 chr15 4034967 4035054 -81660700 - AluS SINE Alu -225 88 2 1947 226 52 21 chr15 4035061 4035584 -81660170 - MER74B LTR ERVL -82 540 2 2421 166 43 61 chr15 4035587 4035899 -81659855 - L1MB3 LINE L1 -560 5623 5307 192 97 0 0 chr15 4035899 4035930 -81659824 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2021 142 0 0 chr15 4035930 4036213 -81659541 - AluSx SINE Alu -29 283 1 2421 166 43 61 chr15 4036213 4036264 -81659490 - L1MB3 LINE L1 -875 5308 5258 2018 166 0 0 chr15 4036264 4036571 -81659183 - AluSx SINE Alu -5 307 1 2421 166 43 61 chr15 4036571 4037044 -81658710 - L1MB3 LINE L1 -925 5258 4793 240 59 0 0 chr15 4037230 4037264 -81658490 + (TG)n Simple_repeat Simple_repeat 1 34 0 872 196 6 30 chr15 4037286 4037454 -81658300 - MLT2D LTR ERVL -54 360 197 2189 122 16 0 chr15 4037455 4037758 -81657996 - AluSx SINE Alu -4 308 1 12706 182 39 20 chr15 4037759 4038240 -81657514 - ERVL LTR ERVL -303 5461 4991 2147 113 0 3 chr15 4038240 4038559 -81657195 - AluSg SINE Alu 0 310 1 12706 182 39 20 chr15 4038559 4040292 -81655462 - ERVL LTR ERVL -773 4991 3198 2160 138 0 6 chr15 4040292 4040603 -81655151 - AluSx SINE Alu -3 309 1 12706 182 39 20 chr15 4040603 4040728 -81655026 - ERVL LTR ERVL -2566 3198 3077 555 258 67 16 chr15 4040712 4040906 -81654848 - ERVL LTR ERVL -5345 419 216 * 841 107 90 0 chr15 4040908 4041030 -81654724 + AluSq/x SINE Alu 1 133 -179 282 264 86 71 chr15 4041041 4041181 -81654573 - ERVL LTR ERVL -5621 143 2 1918 179 42 32 chr15 4041189 4041592 -81654162 - MLT2D LTR ERVL -7 407 1 955 203 81 0 chr15 4041592 4041789 -81653965 - MER58B DNA MER1_type -29 312 100 216 0 0 0 chr15 4041825 4041849 -81653905 + (A)n Simple_repeat Simple_repeat 1 24 0 874 171 7 13 chr15 4041894 4042046 -81653708 + FAM SINE Alu 20 170 -15 480 270 20 7 chr15 4042590 4042742 -81653012 + MIR SINE MIR 2 155 -107 1042 175 0 0 chr15 4042743 4042909 -81652845 + AluJb SINE Alu 137 302 -10 1607 199 3 27 chr15 4042937 4043238 -81652516 - AluJo SINE Alu -5 307 14 32 26 0 0 chr15 4043257 4043296 -81652458 + AT_rich Low_complexity Low_complexity 1 39 0 214 235 59 0 chr15 4043326 4043377 -81652377 + MIR SINE MIR 184 237 -25 2263 114 3 0 chr15 4043831 4044137 -81651617 + AluSg SINE Alu 1 307 -3 725 35 0 0 chr15 4044429 4044515 -81651239 - L1PA3 LINE L1 0 6155 6070 207 0 0 0 chr15 4044582 4044605 -81651149 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2180 98 0 11 chr15 4044608 4044894 -81650860 - AluSc SINE Alu -26 283 1 1470 183 101 6 chr15 4044894 4045232 -81650522 - L1MC3 LINE L1 -23 7762 7393 * 3379 166 50 99 chr15 4045229 4045493 -81650261 - L1MB7 LINE L1 0 6184 5909 2444 100 0 0 chr15 4045493 4045803 -81649951 - AluSx SINE Alu -2 310 1 3379 166 50 99 chr15 4045803 4045850 -81649904 - L1MB7 LINE L1 -275 5909 5861 1719 189 0 3 chr15 4045850 4046151 -81649603 + AluJo SINE Alu 2 301 -11 3379 166 50 99 chr15 4046151 4046297 -81649457 - L1MB7 LINE L1 -323 5861 5709 1512 199 46 26 chr15 4046297 4046603 -81649151 - AluJo SINE Alu 0 312 1 3379 166 50 99 chr15 4046603 4046663 -81649091 - L1MB7 LINE L1 -475 5709 5648 2255 95 0 0 chr15 4046663 4046948 -81648806 - AluSg SINE Alu -17 293 9 3379 166 50 99 chr15 4046948 4047022 -81648732 - L1MB7 LINE L1 -536 5648 5572 1790 156 16 10 chr15 4047022 4047329 -81648425 - AluJo SINE Alu -3 309 1 1912 129 10 23 chr15 4047335 4047644 -81648110 - AluSx SINE Alu -7 305 1 3379 166 50 99 chr15 4047644 4047995 -81647759 - L1MB7 LINE L1 -617 5567 5297 2041 146 7 0 chr15 4047995 4048289 -81647465 - AluSx SINE Alu -16 296 1 3379 166 50 99 chr15 4048289 4048518 -81647236 - L1MB7 LINE L1 -887 5297 5058 304 231 27 7 chr15 4048518 4048665 -81647089 + (TA)n Simple_repeat Simple_repeat 2 151 0 273 133 0 0 chr15 4048693 4048738 -81647016 - L1MB7 LINE L1 -1144 5002 4958 29 28 0 0 chr15 4049203 4049239 -81646515 + AT_rich Low_complexity Low_complexity 1 36 0 322 254 97 6 chr15 4049277 4049442 -81646312 + L1MC3 LINE L1 7444 7623 -162 477 276 91 25 chr15 4049509 4049752 -81646002 - MIR SINE MIR -2 260 2 2232 110 3 0 chr15 4049803 4050102 -81645652 - AluSc SINE Alu -9 300 1 329 187 13 27 chr15 4050175 4050250 -81645504 - MER116 DNA Mariner -6 74 1 562 127 0 64 chr15 4054976 4055086 -81640668 - FLAM_A SINE Alu 0 142 40 1514 193 10 3 chr15 4055204 4055499 -81640255 - AluJo SINE Alu -15 297 1 677 153 85 25 chr15 4055826 4055944 -81639810 + FLAM_C SINE Alu 1 125 -18 839 143 54 0 chr15 4056170 4056317 -81639437 - L1MB7 LINE L1 -334 5850 5696 1423 109 0 0 chr15 4056466 4056650 -81639104 + AluSx SINE Alu 3 186 -126 249 250 250 9 chr15 4056673 4056785 -81638969 - L1MB7 LINE L1 -526 5640 5502 1219 157 89 8 chr15 4056827 4057063 -81638691 - AluJb SINE Alu -18 294 40 756 190 69 6 chr15 4057081 4057255 -81638499 - L1MB7 LINE L1 -733 5441 5257 383 257 16 82 chr15 4057266 4057449 -81638305 - L1MA10 LINE L1 -7 6327 6157 398 254 127 5 chr15 4057455 4057652 -81638102 - L1MB7 LINE L1 -870 5276 5056 21 36 0 0 chr15 4059387 4059415 -81636339 + AT_rich Low_complexity Low_complexity 1 28 0 327 268 113 12 chr15 4059617 4059785 -81635969 - L1MC4a LINE L1 -1918 5890 5706 2285 116 0 0 chr15 4059816 4060117 -81635637 + AluSg SINE Alu 1 301 -9 21 36 0 0 chr15 4060133 4060161 -81635593 + AT_rich Low_complexity Low_complexity 1 28 0 1728 169 28 3 chr15 4060238 4060528 -81635226 + AluJo SINE Alu 1 297 -15 1861 118 83 17 chr15 4060791 4061079 -81634675 - AluSp SINE Alu -6 307 1 2068 127 10 0 chr15 4061737 4062037 -81633717 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr15 4062045 4062066 -81633688 + AT_rich Low_complexity Low_complexity 1 21 0 902 275 112 83 chr15 4062535 4063207 -81632547 - MER21B LTR ERV1 -149 714 24 2245 100 0 7 chr15 4063841 4064140 -81631614 + AluSx SINE Alu 3 299 -13 1104 165 0 0 chr15 4064140 4064310 -81631444 + AluSg/x SINE Alu 132 301 -9 26 0 0 0 chr15 4064801 4064827 -81630927 + AT_rich Low_complexity Low_complexity 1 26 0 2162 116 3 0 chr15 4065616 4065910 -81629844 - AluSq SINE Alu -18 295 1 656 259 27 22 chr15 4066294 4066479 -81629275 + MER58A DNA MER1_type 33 218 -6 427 115 0 0 chr15 4066780 4066841 -81628913 + AluS SINE Alu 2 62 -256 893 208 120 0 chr15 4269038 4269406 -81426348 + LTR54 LTR ERV1 1 450 -60 785 245 63 100 chr15 4269437 4269996 -81425758 - MLT1E LTR MaLR -4 589 1 1200 230 109 35 chr15 4270322 4270726 -81425028 - MER57B LTR ERV1 0 434 1 182 330 11 23 chr15 4270948 4271036 -81424718 - L2 LINE L2 -255 3017 2931 1040 162 47 11 chr15 4272390 4272581 -81423173 + MLT1A1 LTR MaLR 9 206 -159 2022 192 8 6 chr15 4272625 4272985 -81422769 - MLT1A1 LTR MaLR 0 365 5 1644 219 24 4 chr15 4272989 4273359 -81422395 - MLT1A1-int LTR MaLR 0 1651 1306 3027 179 22 72 chr15 4273731 4273934 -81421820 - MLT1A1-int LTR MaLR -1031 704 492 2354 90 40 0 chr15 4273934 4274235 -81421519 - AluSq SINE Alu 0 313 1 3027 179 22 72 chr15 4274235 4274772 -81420982 - MLT1A1-int LTR MaLR -1243 492 1 186 189 0 0 chr15 4274772 4274809 -81420945 + T-rich Low_complexity Low_complexity 1 37 0 2404 105 0 9 chr15 4274811 4275126 -81420628 - AluSx SINE Alu 0 312 1 1736 188 79 9 chr15 4275135 4275476 -81420278 - MLT1A1 LTR MaLR 0 365 1 199 353 12 12 chr15 4276646 4276731 -81419023 + L2 LINE L2 3188 3272 0 225 264 127 9 chr15 4277035 4277145 -81418609 - L2 LINE L2 -223 3049 2927 642 275 85 35 chr15 4277474 4277584 -81418170 + MLT1C LTR MaLR 3 106 -361 2372 92 0 10 chr15 4277584 4277887 -81417867 - AluSc SINE Alu -7 302 3 642 275 85 35 chr15 4277887 4278215 -81417539 + MLT1C LTR MaLR 106 464 -3 748 210 82 20 chr15 4279317 4279512 -81416242 + MLT2B2 LTR ERVL 1 207 -308 390 233 11 0 chr15 4279548 4279638 -81416116 + MLT2D LTR ERVL 316 406 -8 290 302 56 16 chr15 4279913 4280039 -81415715 + MIR SINE MIR 126 256 -6 1139 219 77 28 chr15 4280060 4280412 -81415342 + MLT1C LTR MaLR 6 374 -93 1326 211 111 4 chr15 4281434 4281550 -81414204 + AluJo SINE Alu 1 103 -209 213 39 0 0 chr15 4281550 4281576 -81414178 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1326 211 111 4 chr15 4281576 4281738 -81414016 + AluJo SINE Alu 103 309 -3 749 214 0 0 chr15 4281763 4281894 -81413860 + FLAM_A SINE Alu 1 131 -2 492 271 171 65 chr15 4281966 4282457 -81413297 + MLT1H LTR MaLR 7 549 0 43 47 0 0 chr15 4282670 4282734 -81413020 + AT_rich Low_complexity Low_complexity 1 64 0 2317 97 3 31 chr15 4283401 4283722 -81412032 - AluSp SINE Alu -1 312 1 495 219 0 0 chr15 4286460 4286565 -81409189 + MER45A DNA AcHobo 72 176 -2 35 24 0 0 chr15 4288021 4288063 -81407691 + AT_rich Low_complexity Low_complexity 1 42 0 1063 178 14 14 chr15 4288727 4288941 -81406813 + MLT1A1 LTR MaLR 1 214 -151 3718 103 19 17 chr15 4288941 4289467 -81406287 - MER1A DNA MER1_type 0 527 1 5074 153 37 9 chr15 4290071 4291298 -81404456 + L1PA16 LINE L1 4730 5999 -167 1989 106 81 0 chr15 4291298 4291581 -81404173 + AluSx SINE Alu 1 306 -6 5074 153 37 9 chr15 4291581 4291752 -81404002 + L1PA16 LINE L1 5999 6164 -2 238 353 0 17 chr15 4292296 4292415 -81403339 + MER58 DNA MER1_type 10 126 -2294 1692 185 34 25 chr15 4292738 4293094 -81402660 + MER46B DNA MER2_type 1 234 -2 526 154 0 39 chr15 4293214 4293318 -81402436 - L1MA6 LINE L1 0 6300 6201 1445 141 4 21 chr15 4293382 4293616 -81402138 + AluJb SINE Alu 1 230 -82 181 358 52 22 chr15 4293923 4294057 -81401697 + L3b LINE CR1 1102 1239 -344 2090 99 57 3 chr15 4294673 4294955 -81400799 - AluSc SINE Alu -12 297 1 247 340 81 36 chr15 4296621 4296930 -81398824 - L1MC/D LINE L1 -1976 5832 5510 367 335 51 10 chr15 4298700 4298897 -81396857 - L2 LINE L2 -10 3303 3099 473 175 28 34 chr15 4298912 4299457 -81396297 + (TG)n Simple_repeat Simple_repeat 1 542 0 243 79 0 0 chr15 4299575 4299613 -81396141 + (CGGGGG)n Simple_repeat Simple_repeat 3 40 0 1242 145 291 27 chr15 4299817 4300154 -81395600 - MSTA LTR MaLR 0 428 3 191 281 61 37 chr15 4300746 4300828 -81394926 - MER5B DNA MER1_type -82 96 13 1890 166 0 12 chr15 4301048 4301391 -81394363 - L1MB5 LINE L1 -194 6478 6140 1752 156 43 3 chr15 4301402 4301728 -81394026 + MER47A DNA MER2_type 28 366 0 1220 167 31 0 chr15 4301732 4301960 -81393794 - L1MB5 LINE L1 -540 6138 5904 * 3256 226 64 29 chr15 4301954 4303012 -81392742 - L1MB5 LINE L1 -1621 5023 3929 436 320 101 4 chr15 4303137 4303365 -81392389 - L1MB5 LINE L1 -6291 251 2 191 259 12 86 chr15 4304044 4304125 -81391629 - MIR3 SINE MIR -8 200 126 1765 73 20 4 chr15 4304233 4304478 -81391276 + L1PA10 LINE L1 5918 6166 -2 1740 149 11 0 chr15 4305373 4305642 -81390112 + AluSx SINE Alu 41 312 0 390 362 54 0 chr15 4305917 4306102 -81389652 - MIR SINE MIR -1 261 67 2089 98 79 25 chr15 4307287 4307643 -81388111 + THE1C LTR MaLR 1 375 0 759 233 132 35 chr15 4307716 4308007 -81387747 - MLT1E2 LTR MaLR -258 396 51 469 278 115 53 chr15 4308079 4308288 -81387466 - MIR SINE MIR -35 227 6 1304 167 40 4 chr15 4311740 4311968 -81383786 - MER46A DNA MER2_type 0 236 1 1896 216 98 5 chr15 4312939 4313366 -81382388 - MLT1C LTR MaLR 0 467 1 371 252 86 29 chr15 4313972 4314111 -81381643 - L2 LINE L2 -2 3311 3165 1972 129 0 4 chr15 4314189 4314468 -81381286 + AluSx SINE Alu 27 304 -8 227 318 45 23 chr15 4316735 4316867 -81378887 - LTR16B LTR ERVL -6 458 324 3248 233 38 55 chr15 4317156 4319166 -81376588 + L1MD2 LINE L1 4147 6133 -226 254 231 201 22 chr15 4319172 4319306 -81376448 + L1MD2 LINE L1 6191 6348 -11 21 0 0 0 chr15 4320835 4320856 -81374898 + AT_rich Low_complexity Low_complexity 1 21 0 2003 115 0 11 chr15 4321329 4321665 -81374089 + AluSx SINE Alu 1 333 0 228 226 0 19 chr15 4321962 4322015 -81373739 + C-rich Low_complexity Low_complexity 1 52 0 22 35 7 0 chr15 4325122 4325198 -81370556 + GC_rich Low_complexity Low_complexity 1 36 0 22 103 0 0 chr15 4325236 4325314 -81370440 + GC_rich Low_complexity Low_complexity 1 78 0 943 155 0 12 chr15 4326175 4326343 -81369411 + AluJb SINE Alu 1 166 -146 1920 121 0 0 chr15 4326781 4327054 -81368700 - AluSx SINE Alu -36 276 4 719 252 133 13 chr15 4327131 4327365 -81368389 - MIR SINE MIR 0 262 1 2785 10 0 0 chr15 4327896 4328207 -81367547 + AluYb8 SINE Alu 1 311 -7 289 276 0 23 chr15 4328872 4328959 -81366795 - L1ME3 LINE L1 -7 6155 6071 1877 177 88 20 chr15 4330444 4330538 -81365216 - L1MC2 LINE L1 0 6344 6258 361 36 36 0 chr15 4330538 4330593 -81365161 + (CA)n Simple_repeat Simple_repeat 2 58 0 1877 177 88 20 chr15 4330593 4330939 -81364815 - L1MC2 LINE L1 -86 6258 5874 315 291 103 14 chr15 4331390 4331756 -81363998 - L1ME LINE L1 -4869 1671 1262 2635 124 41 5 chr15 4331862 4332273 -81363481 - MSTB LTR MaLR 0 426 1 22 0 0 0 chr15 4333203 4333225 -81362529 + AT_rich Low_complexity Low_complexity 1 22 0 408 289 162 7 chr15 4333426 4333568 -81362186 + MER5A DNA MER1_type 18 181 -8 507 335 31 11 chr15 4335488 4335679 -81360075 - L2 LINE L2 0 3313 3119 2013 113 3 0 chr15 4335900 4336184 -81359570 + AluSg SINE Alu 1 285 -25 2232 175 31 26 chr15 4336310 4336767 -81358987 + MLT1C LTR MaLR 9 467 0 3969 112 28 0 chr15 4336812 4337376 -81358378 - LTR19B LTR ERV1 0 580 1 629 207 39 96 chr15 4337600 4337808 -81357946 - MLT1A1 LTR MaLR -2 363 168 797 199 145 11 chr15 4338434 4338800 -81356954 - MER31B LTR ERV1 0 543 1 1764 157 7 0 chr15 4340684 4340971 -81354783 - AluJb SINE Alu -23 289 1 282 289 11 22 chr15 4342592 4342682 -81353072 - MLT1J1 LTR MaLR -141 305 217 330 286 62 34 chr15 4342696 4342874 -81352880 - MLT1J LTR MaLR -327 184 2 458 327 44 10 chr15 4345373 4345578 -81350176 - L3 LINE CR1 -151 1426 1215 1652 134 0 96 chr15 4345779 4346122 -81349632 + AluY SINE Alu 1 310 -1 197 357 31 10 chr15 4346350 4346448 -81349306 + MIR3 SINE MIR 102 201 -7 1997 136 110 18 chr15 4346800 4347190 -81348564 + MSTB LTR MaLR 1 426 0 218 176 20 0 chr15 4348672 4348723 -81347031 + (TGAA)n Simple_repeat Simple_repeat 3 54 0 309 266 187 12 chr15 4350885 4351126 -81344628 + LTR16A1 LTR ERVL 75 357 -100 439 248 16 16 chr15 4351220 4351345 -81344409 + LTR67 LTR ERVL 426 550 -7 1204 203 127 152 chr15 4351367 4352145 -81343609 - LTR41 LTR ERVL -10 763 5 389 279 36 89 chr15 4352981 4353228 -81342526 + L1ME4a LINE L1 5885 6118 -3 252 212 30 15 chr15 4355819 4355885 -81339869 + CT-rich Low_complexity Low_complexity 4 70 0 386 312 95 18 chr15 4356002 4356287 -81339467 - MLT1J1 LTR MaLR -8 438 132 198 0 0 0 chr15 4356478 4356500 -81339254 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 782 286 84 35 chr15 4357132 4357387 -81338367 - MLT1E LTR MaLR 0 593 321 1949 110 52 55 chr15 4357387 4357752 -81338002 - THE1B LTR MaLR 0 364 1 782 286 84 35 chr15 4357752 4357783 -81337971 - MLT1E LTR MaLR -272 321 293 250 304 13 0 chr15 4357861 4357940 -81337814 - MLT1E LTR MaLR -436 157 78 2041 122 0 3 chr15 4358058 4358361 -81337393 - AluSg SINE Alu -8 302 1 2223 89 7 0 chr15 4361839 4362141 -81333613 - AluSx SINE Alu -8 304 1 4796 172 35 22 chr15 4362277 4363588 -81332166 + L1MB3 LINE L1 4849 6175 -8 1629 201 0 7 chr15 4365023 4365327 -81330427 - AluJo SINE Alu -10 302 1 940 218 13 0 chr15 4365691 4365916 -81329838 - L1MA4 LINE L1 -3 6297 6070 2287 63 0 16 chr15 4366169 4366484 -81329270 + AluY SINE Alu 1 310 -1 327 305 35 0 chr15 4366678 4366808 -81328946 + MIR SINE MIR 25 166 -96 253 264 239 39 chr15 4367311 4367466 -81328288 - MIR SINE MIR -26 236 51 2570 51 0 6 chr15 4367515 4367827 -81327927 + AluY SINE Alu 1 310 -1 286 290 0 0 chr15 4368676 4368745 -81327009 + MIR SINE MIR 76 144 -64 644 300 59 39 chr15 4369010 4369347 -81326407 + L1MB1 LINE L1 242 585 -5546 239 125 429 0 chr15 4369562 4369618 -81326136 + MADE1 DNA Mariner 1 80 0 376 257 30 10 chr15 4369640 4369742 -81326012 + L1M3d LINE L1 898 999 -5132 * 3923 230 66 64 chr15 4369732 4370577 -81325177 + L1MB1 LINE L1 662 1504 -4706 449 161 0 0 chr15 4370577 4370658 -81325096 + AluJ/FRAM SINE Alu 232 312 0 3923 230 66 64 chr15 4370658 4371197 -81324557 + L1MB1 LINE L1 1504 2040 -4170 2619 36 0 10 chr15 4371197 4371500 -81324254 + AluY SINE Alu 1 300 -11 3923 230 66 64 chr15 4371500 4372797 -81322957 + L1MB1 LINE L1 2040 3435 -2775 2697 236 30 10 chr15 4372801 4373533 -81322221 + L1MB1 LINE L1 4493 5239 -971 1151 184 22 4 chr15 4373530 4373758 -81321996 + L1MB1 LINE L1 5778 6009 -223 * 505 287 35 54 chr15 4373996 4374257 -81321497 - L2 LINE L2 -4 3309 3054 689 346 26 8 chr15 4374386 4374892 -81320862 + L1MEc LINE L1 1284 1798 -4598 2481 61 0 3 chr15 4375020 4375317 -81320437 - AluY SINE Alu -15 296 1 452 291 30 39 chr15 4375836 4376070 -81319684 - L1ME2 LINE L1 -10 6154 5923 * 871 234 68 0 chr15 4376067 4376315 -81319439 + L1ME2 LINE L1 5647 5911 -253 3391 98 34 23 chr15 4376496 4377025 -81318729 - L1PA14 LINE L1 -1 6160 5626 1381 176 0 5 chr15 4378871 4379092 -81316662 - AluJb SINE Alu -21 291 72 1656 107 5 32 chr15 4380382 4380909 -81314845 + MER4B LTR ERV1 1 610 0 279 324 6 59 chr15 4380917 4381071 -81314683 - MIR SINE MIR -62 146 24 276 30 0 0 chr15 4381342 4381375 -81314379 + (GA)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr15 4381606 4381628 -81314126 + AT_rich Low_complexity Low_complexity 1 22 0 199 377 0 0 chr15 4382156 4382233 -81313521 + L2 LINE L2 3196 3272 0 256 300 12 12 chr15 4382381 4382461 -81313293 + Charlie8 DNA MER1_type 154 233 -2184 1889 284 86 57 chr15 4382502 4383641 -81312113 + L1MC4a LINE L1 -244 927 -5353 1802 254 36 39 chr15 4383679 4384514 -81311240 + L1MC4a LINE L1 1314 2307 -4256 2490 207 33 37 chr15 4384521 4385176 -81310578 + L1MC4a LINE L1 2329 2981 -3401 1522 164 114 18 chr15 4385176 4385456 -81310298 - AluJb SINE Alu -5 307 1 2490 207 33 37 chr15 4385456 4385527 -81310227 + L1MC4a LINE L1 2981 3051 -3331 376 304 62 0 chr15 4385528 4385640 -81310114 + MER94 DNA DNA 15 133 -1 704 110 0 42 chr15 4385867 4385985 -81309769 - L1MA3 LINE L1 -19 6286 6174 793 165 15 0 chr15 4386112 4386245 -81309509 - AluJo SINE Alu -171 141 7 5265 182 37 7 chr15 4386455 4387141 -81308613 - L1 LINE L1 -1049 5097 4365 207 0 0 0 chr15 4387141 4387164 -81308590 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 5265 182 37 7 chr15 4387164 4387550 -81308204 - L1 LINE L1 -1781 4365 3992 5383 160 14 23 chr15 4387557 4387766 -81307988 + L1MA7 LINE L1 5042 5251 -1040 2072 122 26 13 chr15 4387766 4388070 -81307684 - AluSx SINE Alu 0 312 5 5383 160 14 23 chr15 4388070 4389107 -81306647 + L1MA7 LINE L1 5251 6281 -10 229 239 150 17 chr15 4389154 4389388 -81306366 + L1MC4a LINE L1 3199 3463 -2919 450 53 0 0 chr15 4389635 4389692 -81306062 + (CA)n Simple_repeat Simple_repeat 2 58 0 240 35 0 0 chr15 4389691 4389720 -81306034 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 241 264 41 50 chr15 4389725 4389846 -81305908 + L1MC4a LINE L1 3759 3878 -2504 413 329 82 30 chr15 4390059 4391165 -81304589 + L1MC4a LINE L1 4306 5469 -913 3443 243 83 110 chr15 4391195 4391294 -81304460 + L1MC4a LINE L1 5518 5618 -2426 2340 113 0 0 chr15 4391294 4391604 -81304150 - AluSg SINE Alu 0 310 1 3443 243 83 110 chr15 4391604 4393950 -81301804 + L1MC4a LINE L1 5618 7897 -147 1549 294 86 11 chr15 4395754 4395910 -81299844 + L1ME3 LINE L1 5272 5415 -747 2287 79 3 13 chr15 4395910 4396214 -81299540 + AluSc SINE Alu 1 301 -8 1549 294 86 11 chr15 4396214 4396720 -81299034 + L1ME3 LINE L1 5415 5984 -178 1860 97 0 73 chr15 4396841 4397155 -81298599 + AluSx SINE Alu 20 312 0 1158 183 10 0 chr15 4397846 4398048 -81297706 + AluJb SINE Alu 103 306 -6 368 183 11 0 chr15 4398055 4398148 -81297606 + GA-rich Low_complexity Low_complexity 3 96 0 22 56 0 0 chr15 4399832 4399868 -81295886 + AT_rich Low_complexity Low_complexity 1 36 0 3324 110 24 24 chr15 4399999 4400611 -81295143 + L1PA15 LINE L1 5069 5681 -484 1799 174 10 3 chr15 4400611 4400910 -81294844 + AluJb SINE Alu 1 301 -11 3324 110 24 24 chr15 4400910 4400987 -81294767 + L1PA15 LINE L1 5681 5756 -409 940 166 7 0 chr15 4400994 4401145 -81294609 + FRAM SINE Alu 9 160 -16 2134 122 18 9 chr15 4401145 4401481 -81294273 + L1PA15 LINE L1 5814 6152 -13 2107 123 3 0 chr15 4401488 4401790 -81293964 + AluSx SINE Alu 1 303 -9 352 298 191 6 chr15 4402165 4402333 -81293421 + MLT1H LTR MaLR 83 281 -268 283 170 0 0 chr15 4402359 4402406 -81293348 + L1M1 LINE L1 5816 5862 -438 1313 92 0 0 chr15 4402622 4402795 -81292959 + AluSc SINE Alu 134 306 -3 249 33 0 0 chr15 4402917 4402947 -81292807 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 235 300 190 0 chr15 4403090 4403190 -81292564 + MLT1H LTR MaLR 431 549 0 6116 76 47 37 chr15 4403320 4404829 -81290925 + SVA Other Other 327 1449 0 1000 182 0 18 chr15 4404970 4405167 -81290587 - AluJo SINE Alu 0 312 135 338 141 0 16 chr15 4405167 4405231 -81290523 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 770 176 8 0 chr15 4405231 4405362 -81290392 - AluJo SINE Alu -169 133 2 261 0 0 0 chr15 4406087 4406116 -81289638 + (A)n Simple_repeat Simple_repeat 1 29 0 810 281 9 5 chr15 4406719 4406936 -81288818 + L1MEc LINE L1 32 249 -6147 2258 264 36 70 chr15 4406959 4407121 -81288633 + L1MEc LINE L1 415 581 -5815 2541 127 7 56 chr15 4407121 4407571 -81288183 - MSTA LTR MaLR 0 428 1 2258 264 36 70 chr15 4407571 4408607 -81287147 + L1MEc LINE L1 581 1572 -4824 1142 215 66 51 chr15 4408607 4408942 -81286812 + MER2 DNA MER2_type 5 344 0 2258 264 36 70 chr15 4408942 4408979 -81286775 + L1MEc LINE L1 1572 1609 -4787 2008 324 82 30 chr15 4409003 4409881 -81285873 + L1M4b LINE L1 -562 361 -5923 577 256 65 38 chr15 4410453 4411053 -81284701 + L1M4b LINE L1 655 1238 -5325 2282 68 0 10 chr15 4411053 4411345 -81284409 + AluY SINE Alu 1 289 -22 270 0 0 0 chr15 4411353 4411383 -81284371 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 577 256 65 38 chr15 4411383 4411841 -81283913 + L1M4b LINE L1 1244 1989 -4574 25 31 0 0 chr15 4411929 4411961 -81283793 + AT_rich Low_complexity Low_complexity 1 32 0 2362 254 29 16 chr15 4412433 4413281 -81282473 + L1M4b LINE L1 2299 3112 -3270 13488 162 24 19 chr15 4413286 4415987 -81279767 + L1MA2 LINE L1 3022 5706 -2017 2387 87 3 0 chr15 4415987 4416296 -81279458 + AluY SINE Alu 1 310 -1 13488 162 24 19 chr15 4416296 4416927 -81278827 + L1MA2 LINE L1 5706 6332 -1391 2059 124 0 0 chr15 4416927 4417201 -81278553 + AluSg SINE Alu 25 298 -12 13488 162 24 19 chr15 4417201 4418514 -81277240 + L1MA2 LINE L1 6332 7721 -2 1571 218 66 61 chr15 4418545 4419104 -81276650 + L1MB7 LINE L1 5613 6174 -10 2696 234 76 26 chr15 4419140 4420345 -81275409 + L1MEc LINE L1 1997 3242 -2973 249 276 0 0 chr15 4420428 4420486 -81275268 + MIR3 SINE MIR 149 206 -2 1696 71 0 5 chr15 4420786 4420996 -81274758 - AluY SINE Alu -69 242 34 1631 152 4 12 chr15 4424221 4424477 -81271277 - AluJo SINE Alu -19 293 40 317 324 9 19 chr15 4425947 4426055 -81269699 - MIR3 SINE MIR -18 190 84 564 262 38 0 chr15 4426464 4426647 -81269107 + L1M4 LINE L1 2687 2876 -3270 307 190 0 0 chr15 4426655 4426713 -81269041 + L1ME LINE L1 5685 5742 -422 1326 99 0 20 chr15 4426833 4427034 -81268720 - L1PA13 LINE L1 -4 6159 5963 2446 198 118 39 chr15 4427034 4427218 -81268536 + L1M4 LINE L1 2867 3035 -3111 2359 74 0 16 chr15 4427218 4427530 -81268224 - AluY SINE Alu -4 307 1 2446 198 118 39 chr15 4427530 4428321 -81267433 + L1M4 LINE L1 3035 3919 -2227 22 35 0 0 chr15 4479383 4479412 -81216342 + AT_rich Low_complexity Low_complexity 1 29 0 1504 223 76 3 chr15 4479569 4479936 -81215818 + MER89 LTR ERV1 166 559 0 890 173 162 5 chr15 4480262 4480447 -81215307 + AluJo SINE Alu 81 294 -18 33 25 0 0 chr15 4481134 4481174 -81214580 + AT_rich Low_complexity Low_complexity 1 40 0 1983 157 141 11 chr15 4481225 4481534 -81214220 + MSTB LTR MaLR 3 371 -55 2049 103 65 3 chr15 4481534 4481825 -81213929 - AluSg SINE Alu -1 309 1 1983 157 141 11 chr15 4481825 4481890 -81213864 + MSTB LTR MaLR 371 426 0 36 65 0 49 chr15 4482507 4482630 -81213124 + AT_rich Low_complexity Low_complexity 1 117 0 795 153 13 38 chr15 4482630 4482787 -81212967 - FRAM SINE Alu -26 150 1 2378 165 85 6 chr15 4483084 4483885 -81211869 - L1M2 LINE L1 -536 5755 4895 1340 172 93 26 chr15 4483937 4484205 -81211549 - AluJo SINE Alu -25 287 2 3603 153 38 11 chr15 4484860 4485493 -81210261 - L1MA5 LINE L1 0 6300 5651 2253 174 62 24 chr15 4485733 4486199 -81209555 + MER72 LTR ERV1 239 722 0 1066 151 25 10 chr15 4488118 4488317 -81207437 - MER65A LTR ERV1 0 445 244 1295 183 65 48 chr15 4489236 4489680 -81206074 + MER89 LTR ERV1 9 559 0 401 304 190 27 chr15 4490682 4491051 -81204703 + MLT1J LTR MaLR 83 511 0 22 56 0 0 chr15 4493358 4493394 -81202360 + AT_rich Low_complexity Low_complexity 1 36 0 1169 136 61 24 chr15 4493553 4493766 -81201988 + MER65A LTR ERV1 1 221 -224 22 0 0 0 chr15 4493866 4493888 -81201866 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr15 4494078 4494101 -81201653 + AT_rich Low_complexity Low_complexity 1 23 0 406 285 65 27 chr15 4494294 4494480 -81201274 + L1ME2 LINE L1 5707 5899 -265 349 262 44 44 chr15 4494526 4494765 -81200989 - L1ME LINE L1 -5007 1076 834 1179 129 0 0 chr15 4494771 4494941 -81200813 - AluSp SINE Alu -7 306 137 557 285 52 22 chr15 4494951 4495065 -81200689 - L1ME LINE L1 -5194 876 767 2062 119 22 19 chr15 4495065 4495377 -81200377 - AluSq SINE Alu 0 313 1 557 285 52 22 chr15 4495377 4495632 -81200122 - L1ME LINE L1 -5303 767 508 2133 142 0 0 chr15 4496445 4496748 -81199006 - AluSq SINE Alu 0 313 11 1378 66 12 0 chr15 4496903 4497069 -81198685 + L1PA7 LINE L1 5985 6152 -2 21 0 0 0 chr15 4497080 4497101 -81198653 + AT_rich Low_complexity Low_complexity 1 21 0 2469 122 98 0 chr15 4497104 4497482 -81198272 + MER4C LTR ERV1 51 465 0 718 283 101 24 chr15 4497482 4498029 -81197725 - L1MCa LINE L1 -3985 2622 2034 6944 140 46 9 chr15 4498041 4499223 -81196531 - Tigger3b DNA MER2_type -1 1230 6 384 284 36 47 chr15 4499388 4499633 -81196121 - L1MCa LINE L1 -4452 2155 1800 * 937 263 25 25 chr15 4499632 4499913 -81195841 + L1M4b LINE L1 400 680 -6179 24 0 0 0 chr15 4500531 4500555 -81195199 + AT_rich Low_complexity Low_complexity 1 24 0 596 248 25 12 chr15 4501021 4501182 -81194572 - MER5A DNA MER1_type -26 163 1 720 143 9 0 chr15 4501243 4501348 -81194406 + AluJb SINE Alu 2 107 -205 2144 165 98 73 chr15 4501715 4502279 -81193475 + MER34C LTR ERV1 1 578 -7 440 277 69 27 chr15 4503326 4503518 -81192236 - MIR SINE MIR -24 238 40 1282 177 53 87 chr15 4504143 4504521 -81191233 + MLT1A1 LTR MaLR 1 365 0 324 0 0 0 chr15 4506800 4506836 -81188918 + (CA)n Simple_repeat Simple_repeat 1 36 0 4797 140 24 40 chr15 4507634 4508067 -81187687 + L1PA14 LINE L1 4343 4781 -1380 2190 104 0 3 chr15 4508067 4508364 -81187390 + AluSx SINE Alu 1 296 -16 4797 140 24 40 chr15 4508364 4509345 -81186409 + L1PA14 LINE L1 4781 5728 -433 3109 97 27 0 chr15 4509445 4509856 -81185898 + L1PA14 LINE L1 5735 6156 -5 1023 173 24 0 chr15 4510228 4510396 -81185358 - FRAM SINE Alu -10 166 1 1609 168 0 42 chr15 4510418 4510727 -81185027 - AluJb SINE Alu -16 296 1 240 111 0 0 chr15 4512087 4512123 -81183631 + (A)n Simple_repeat Simple_repeat 1 36 0 434 288 109 71 chr15 4512185 4512553 -81183201 + L2 LINE L2 2928 3309 -4 2005 112 54 20 chr15 4512628 4512924 -81182830 - AluSx SINE Alu -6 306 1 1721 70 19 0 chr15 4513892 4514105 -81181649 - L1PA7 LINE L1 -3 6151 5935 1953 39 0 4 chr15 4514105 4514334 -81181420 + L1PA7 LINE L1 5718 5945 -209 5692 170 110 78 chr15 4515348 4515924 -81179830 - L1MC3 LINE L1 -7 7778 7222 238 215 0 118 chr15 4515924 4516017 -81179737 - MLT1D LTR MaLR -443 124 43 5692 170 110 78 chr15 4516017 4516891 -81178863 - L1MC3 LINE L1 -563 7222 6187 781 266 113 38 chr15 4516887 4517534 -81178220 + L1ME LINE L1 895 1565 -4515 * 1029 114 60 0 chr15 4517602 4517751 -81178003 - AluSq SINE Alu -12 301 144 2952 117 3 0 chr15 4517751 4518143 -81177611 + MER1A DNA MER1_type 133 525 -4 396 200 0 0 chr15 4518158 4518228 -81177526 - MLT1D LTR MaLR -435 70 1 2465 77 3 0 chr15 4518297 4518596 -81177158 + AluY SINE Alu 1 300 -11 367 282 31 11 chr15 4518786 4518939 -81176815 - L1ME LINE L1 -567 5595 5434 533 289 58 0 chr15 4519140 4519348 -81176406 + L1ME LINE L1 2398 2617 -3463 249 257 95 0 chr15 4520335 4520409 -81175345 - L2 LINE L2 -4 3268 3188 253 185 154 0 chr15 4522429 4522494 -81173260 - MIR3 SINE MIR -48 160 86 849 158 129 0 chr15 4523497 4523668 -81172086 + LOR1b LTR ERV1 1 193 -268 515 136 45 0 chr15 4523669 4523757 -81171997 + LOR1b LTR ERV1 370 461 0 190 328 156 26 chr15 4524298 4524490 -81171264 - L3 LINE CR1 -41 1536 1320 212 322 299 0 chr15 4524626 4524800 -81170954 - MIR SINE MIR 0 262 37 1758 180 59 73 chr15 4526152 4526635 -81169119 + LTR39 LTR ERV1 1 395 -388 230 158 0 0 chr15 4526605 4526643 -81169111 + MER4D LTR ERV1 244 281 -591 * 2105 175 29 11 chr15 4526681 4527058 -81168696 + LTR39 LTR ERV1 400 783 0 517 235 74 20 chr15 4528514 4528663 -81167091 + MER34 LTR ERV1 1 157 -385 941 189 112 58 chr15 4528729 4528988 -81166766 + AluJb SINE Alu 1 273 -39 671 62 0 14 chr15 4529722 4529822 -81165932 - L1P5 LINE L1 -387 5764 5672 3630 12 5 0 chr15 4529830 4530241 -81165513 + L1HS LINE L1 5741 6153 -2 268 43 21 21 chr15 4530246 4530293 -81165461 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 266 358 98 17 chr15 4532846 4533019 -81162735 - MIR SINE MIR -74 188 2 1273 157 50 5 chr15 4533349 4533754 -81162000 + LTR54 LTR ERV1 8 510 0 2063 159 31 48 chr15 4534043 4534464 -81161290 + L1MB3 LINE L1 5761 6174 -9 222 296 0 0 chr15 4536509 4536563 -81159191 + (TG)n Simple_repeat Simple_repeat 1 54 0 1775 171 39 47 chr15 4536921 4537302 -81158452 + MLT1B LTR MaLR 2 379 -11 480 155 0 0 chr15 4537562 4537701 -81158053 + AluS SINE Alu 227 365 0 231 314 35 0 chr15 4538014 4538100 -81157654 + MIR SINE MIR 51 139 -123 331 260 40 20 chr15 4538244 4538344 -81157410 - L2 LINE L2 0 3313 3212 14220 193 17 15 chr15 4539877 4543989 -81151765 + L1PA15 LINE L1 2047 6164 -1 678 299 104 8 chr15 4544299 4544664 -81151090 + L1ME LINE L1 5329 5728 -393 318 209 32 0 chr15 4545496 4545654 -81150100 + CT-rich Low_complexity Low_complexity 1 163 0 204 40 0 0 chr15 4545654 4545679 -81150075 + (CA)n Simple_repeat Simple_repeat 1 25 0 452 286 65 16 chr15 4546231 4546416 -81149338 + MER58A DNA MER1_type 26 219 -5 440 261 0 6 chr15 4546954 4547134 -81148620 + GA-rich Low_complexity Low_complexity 1 179 0 2117 166 119 5 chr15 4547200 4547579 -81148175 - MSTB LTR MaLR -4 422 1 7456 63 11 0 chr15 4547860 4548959 -81146795 - L1PA7 LINE L1 -3 6151 5049 2703 109 12 0 chr15 4548959 4549362 -81146392 + L1P LINE L1 3199 3606 -2540 489 214 10 0 chr15 4549767 4549865 -81145889 - Tigger5 DNA MER2_type 0 2323 2225 228 202 112 56 chr15 4550002 4550091 -81145663 + MIR SINE MIR 61 154 -108 240 266 159 18 chr15 4550114 4550227 -81145527 - MIR SINE MIR -9 253 125 273 226 107 0 chr15 4550983 4551067 -81144687 + L1MDb LINE L1 1013 1105 -5438 2161 138 0 0 chr15 4551081 4551393 -81144361 + AluSx SINE Alu 1 312 0 1991 100 38 0 chr15 4551396 4551657 -81144097 + AluSc SINE Alu 1 271 -38 264 149 0 0 chr15 4551665 4551712 -81144042 + (GA)n Simple_repeat Simple_repeat 2 48 0 3597 229 106 40 chr15 4551716 4553118 -81142636 + L1MDb LINE L1 1067 2560 -3980 44951 36 3 2 chr15 4553130 4559276 -81136478 + L1PA3 LINE L1 1 6154 -1 4802 176 90 10 chr15 4559294 4560981 -81134773 + L1PA16 LINE L1 4352 6166 0 3612 268 36 26 chr15 4560987 4562412 -81133342 + L1MDb LINE L1 2555 3993 -2547 230 263 18 0 chr15 4562449 4562506 -81133248 + L2 LINE L2 3180 3237 -76 2395 175 25 47 chr15 4562514 4563027 -81132727 + MER34B LTR ERV1 1 502 -63 189 147 0 0 chr15 4563065 4563099 -81132655 + MIR SINE MIR 218 251 -11 285 311 59 8 chr15 4563515 4563634 -81132120 + MIR SINE MIR 4 128 -134 258 384 64 5 chr15 4564326 4564545 -81131209 - MIR SINE MIR -20 242 11 257 127 38 51 chr15 4564976 4565055 -81130699 + (TTATA)n Simple_repeat Simple_repeat 3 80 0 186 171 0 0 chr15 4566324 4566365 -81129389 + (CA)n Simple_repeat Simple_repeat 1 41 0 3747 133 33 9 chr15 4567884 4568522 -81127232 + MER39B LTR ERV1 1 653 0 1595 162 87 21 chr15 4568816 4569253 -81126501 + MER31A LTR ERV1 1 542 -1 1767 171 71 149 chr15 4569298 4570084 -81125670 + LTR8A LTR ERV1 1 725 -2 203 178 22 22 chr15 4570349 4570394 -81125360 + L2 LINE L2 3026 3070 -202 259 250 48 48 chr15 4570792 4570896 -81124858 - MER103 DNA DNA -21 145 42 207 100 0 0 chr15 4570939 4570969 -81124785 + (T)n Simple_repeat Simple_repeat 1 30 0 519 238 81 104 chr15 4571991 4572373 -81123381 + L1MC5 LINE L1 6695 6965 -996 386 19 0 19 chr15 4572373 4572425 -81123329 + (GA)n Simple_repeat Simple_repeat 1 51 0 519 238 81 104 chr15 4572425 4572610 -81123144 + L1MC5 LINE L1 6965 7153 -808 1312 216 16 44 chr15 4573094 4573409 -81122345 - AluJo SINE Alu -6 306 1 982 257 120 14 chr15 4574819 4575177 -81120577 + MSTD LTR MaLR 1 396 0 474 120 0 0 chr15 4575426 4575501 -81120253 + (TA)n Simple_repeat Simple_repeat 1 75 0 1035 268 68 78 chr15 4576362 4577247 -81118507 - L1MEc LINE L1 -4110 2286 1411 370 214 0 12 chr15 4577248 4577332 -81118422 + MLT1A2 LTR MaLR 281 363 -11 309 307 84 46 chr15 4577523 4577976 -81117778 + L2 LINE L2 2808 3277 -36 1514 207 13 0 chr15 4578126 4578431 -81117323 - MLT1A1 LTR MaLR -2 363 55 319 280 19 0 chr15 4581435 4581542 -81114212 + L3 LINE CR1 1179 1287 -290 275 276 21 80 chr15 4582251 4582490 -81113264 + L1MC4 LINE L1 7455 7679 -363 406 266 114 45 chr15 4582619 4582909 -81112845 + L1MC4 LINE L1 7732 8041 -1 481 177 146 10 chr15 4583367 4583463 -81112291 - FRAM SINE Alu -25 151 43 613 175 0 10 chr15 4583588 4583691 -81112063 + AluJo SINE Alu 87 188 -124 506 206 10 0 chr15 4583689 4583791 -81111963 - AluJo/FLAM SINE Alu -209 103 1 * 359 265 31 95 chr15 4585209 4585526 -81110228 + L1M4 LINE L1 4896 5192 -954 1145 199 75 39 chr15 4585536 4585817 -81109937 + LTR40a LTR ERVL 229 519 0 252 284 30 67 chr15 4585996 4586130 -81109624 + HAL1 LINE L1 581 709 -1798 259 261 19 45 chr15 4586273 4586430 -81109324 + HAL1 LINE L1 926 1078 -1429 366 271 66 22 chr15 4586813 4586994 -81108760 + HAL1 LINE L1 1661 1849 -658 360 323 105 28 chr15 4587235 4587515 -81108239 + HAL1 LINE L1 2121 2435 -72 2111 143 0 0 chr15 4587515 4587809 -81107945 - AluSx SINE Alu -18 294 1 360 323 105 28 chr15 4587809 4587881 -81107873 + HAL1 LINE L1 2435 2500 -7 324 286 161 0 chr15 4589311 4589423 -81106331 - MIR SINE MIR -96 166 37 21 0 0 0 chr15 4590322 4590343 -81105411 + AT_rich Low_complexity Low_complexity 1 21 0 2386 244 63 49 chr15 4590351 4590677 -81105077 + L1MD1 LINE L1 27 347 -6193 2455 91 0 0 chr15 4590677 4590986 -81104768 - AluY SINE Alu -2 309 1 2386 244 63 49 chr15 4590986 4592016 -81103738 + L1MD1 LINE L1 347 1558 -4982 1792 240 41 21 chr15 4592067 4592683 -81103071 + L1M4 LINE L1 3544 4171 -1975 280 48 71 0 chr15 4592684 4592726 -81103028 + MER31A LTR ERV1 1 45 -440 1759 209 63 23 chr15 4592730 4593251 -81102503 + L1MCb LINE L1 603 1144 -4901 1432 245 57 33 chr15 4593304 4593843 -81101911 + L1M4 LINE L1 4431 4986 -1160 2532 37 0 3 chr15 4593843 4594142 -81101612 + AluY SINE Alu 1 298 -13 1432 245 57 33 chr15 4594142 4594177 -81101577 + L1M4 LINE L1 4986 5019 -1127 249 136 0 34 chr15 4594292 4594351 -81101403 + L1M LINE L1 5304 5360 -999 * 1759 270 46 16 chr15 4594337 4595138 -81100616 + L1MD1 LINE L1 4861 5685 -855 1423 246 35 22 chr15 4595138 4595541 -81100213 - MLT1D LTR MaLR -90 415 8 2063 183 27 11 chr15 4595544 4595992 -81099762 + L1MD1 LINE L1 6182 6636 0 258 253 40 0 chr15 4596977 4597052 -81098702 - MIR SINE MIR -111 151 74 324 196 0 0 chr15 4597241 4597297 -81098457 - MLT1D LTR MaLR -119 386 331 7262 235 55 51 chr15 4597309 4600520 -81095234 - L1M4 LINE L1 -1298 5346 2149 1981 128 0 11 chr15 4600520 4600830 -81094924 - AluY SINE Alu 0 308 2 7262 235 55 51 chr15 4600830 4601338 -81094416 - L1M4 LINE L1 -4495 2149 1644 778 0 31 0 chr15 4601338 4601435 -81094319 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 7262 235 55 51 chr15 4601435 4602979 -81092775 - L1M4 LINE L1 -5000 1644 16 1630 196 0 7 chr15 4603651 4603931 -81091823 + AluJo SINE Alu 1 278 -34 219 36 0 0 chr15 4603937 4603965 -81091789 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1549 168 80 18 chr15 4603984 4604270 -81091484 + AluJb SINE Alu 9 312 0 2068 101 5 69 chr15 4604416 4604791 -81090963 + THE1A LTR MaLR 5 355 0 1651 219 83 59 chr15 4605260 4605836 -81089918 + LTR68 LTR ERV1 21 610 -130 459 214 68 48 chr15 4606187 4606439 -81089315 + HAL1 LINE L1 899 1155 -1352 3999 184 73 12 chr15 4606565 4607376 -81088378 - MER21B LTR ERV1 -3 860 1 2517 162 30 48 chr15 4607438 4607962 -81087792 + MLT2B3 LTR ERVL 1 515 -39 258 105 0 0 chr15 4607987 4608025 -81087729 + (TCTG)n Simple_repeat Simple_repeat 3 40 0 607 247 77 13 chr15 4608095 4608330 -81087424 + HAL1 LINE L1 1338 1587 -920 329 245 47 0 chr15 4608814 4608920 -81086834 + HAL1 LINE L1 2287 2397 -110 2110 122 0 7 chr15 4611080 4611406 -81084348 - AluSg SINE Alu 0 310 1 1521 236 29 52 chr15 4613878 4614649 -81081105 + L1MB3 LINE L1 2798 3550 -2596 * 2521 158 31 8 chr15 4614646 4615346 -81080408 + L1M1 LINE L1 4899 5614 -686 5995 204 40 25 chr15 4615402 4617976 -81077778 + L1MB3 LINE L1 3554 6173 -10 908 136 0 0 chr15 4618821 4618953 -81076801 - FLAM_C SINE Alu -11 132 1 2286 178 38 2 chr15 4619522 4619949 -81075805 - L1MB3 LINE L1 -120 6063 5622 554 279 47 12 chr15 4620668 4620840 -81074914 + MIR SINE MIR 37 214 -48 1878 178 67 13 chr15 4621403 4621791 -81073963 - L1MA5 LINE L1 -1 6299 5891 1871 179 68 0 chr15 4623435 4623771 -81071983 - MLT1A1 LTR MaLR -6 359 1 517 280 45 40 chr15 4624524 4624724 -81071030 + MIR SINE MIR 32 232 -30 3606 80 35 8 chr15 4624778 4625266 -81070488 - L1MA2 LINE L1 -2 6302 5802 365 259 0 0 chr15 4625309 4625390 -81070364 + MIR SINE MIR 34 114 -148 227 233 0 33 chr15 4626616 4626676 -81069078 - Charlie8 DNA MER1_type 0 2417 2360 1541 290 36 63 chr15 4626953 4627557 -81068197 + MLT1E LTR MaLR 1 588 -5 1479 236 44 35 chr15 4627610 4628064 -81067690 - MER39 LTR ERV1 0 707 250 207 336 71 18 chr15 4628574 4628687 -81067067 + L3 LINE CR1 618 736 -841 512 297 102 25 chr15 4629029 4629265 -81066489 + MIR SINE MIR 9 262 0 21 0 0 0 chr15 4629271 4629292 -81066462 + AT_rich Low_complexity Low_complexity 1 21 0 270 303 311 8 chr15 4629311 4629443 -81066311 + L3 LINE CR1 1282 1453 -124 625 264 25 0 chr15 4629856 4630015 -81065739 + MIR SINE MIR 28 190 -72 1454 192 17 118 chr15 4630016 4630422 -81065332 - MLT1A1 LTR MaLR 0 365 1 222 219 0 0 chr15 4630436 4630477 -81065277 + CT-rich Low_complexity Low_complexity 2 42 0 1757 200 63 25 chr15 4630727 4631173 -81064581 + MER31B LTR ERV1 1 543 0 22 88 0 0 chr15 4632739 4632796 -81062958 + AT_rich Low_complexity Low_complexity 1 57 0 239 200 178 30 chr15 4632796 4632931 -81062823 + L1MC/D LINE L1 3030 3184 -2962 2666 230 82 26 chr15 4633044 4634163 -81061591 + L1MC/D LINE L1 4399 5587 -772 216 0 0 0 chr15 4634163 4634187 -81061567 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2666 230 82 26 chr15 4634187 4634221 -81061533 + L1MC/D LINE L1 5587 5618 -741 4498 246 126 58 chr15 4635440 4635780 -81059974 + L1MDa LINE L1 4 319 -6221 2013 113 10 7 chr15 4635780 4636071 -81059683 - AluSx SINE Alu -20 292 1 4498 246 126 58 chr15 4636071 4638954 -81056800 + L1MDa LINE L1 319 3432 -3108 727 174 0 9 chr15 4638955 4639070 -81056684 + 5S rRNA rRNA 2 115 -6 2245 169 125 5 chr15 4640365 4640773 -81054981 + MSTB2 LTR MaLR 1 457 0 869 260 174 0 chr15 4640948 4641229 -81054525 + MLT1F LTR MaLR 213 542 0 289 276 46 0 chr15 4641280 4641367 -81054387 - L2 LINE L2 -1 3312 3222 764 224 167 5 chr15 4641944 4642136 -81053618 + MER58A DNA MER1_type 2 224 0 2608 195 43 4 chr15 4642559 4643118 -81052636 + LTR69 LTR ERVL 1 581 -7 1839 211 49 0 chr15 4644152 4644560 -81051194 - L1MA6 LINE L1 0 6300 5873 204 254 16 0 chr15 4645135 4645198 -81050556 + (TA)n Simple_repeat Simple_repeat 2 65 0 1172 260 14 33 chr15 4645936 4646302 -81049452 + L1MEc LINE L1 36 394 -6002 * 3085 226 53 40 chr15 4646288 4647366 -81048388 + L1M4 LINE L1 2922 4013 -2133 1128 185 28 5 chr15 4647371 4647587 -81048167 + AluJo SINE Alu 79 299 -13 3975 222 93 18 chr15 4647593 4647623 -81048131 + L1M4 LINE L1 4023 4049 -2097 2278 120 0 0 chr15 4647623 4647931 -81047823 + AluSq SINE Alu 1 308 -5 3975 222 93 18 chr15 4647931 4648849 -81046905 + L1M4 LINE L1 4049 5076 -1070 2268 116 3 0 chr15 4648849 4649159 -81046595 + AluSp SINE Alu 3 313 0 3975 222 93 18 chr15 4649159 4649367 -81046387 + L1M4 LINE L1 5076 5267 -879 456 324 17 12 chr15 4649555 4649728 -81046026 - LTR10B LTR ERV1 0 505 332 1659 283 39 27 chr15 4650054 4650838 -81044916 - HERVI LTR ERV1 -1788 5836 4091 1194 59 13 0 chr15 4651070 4651222 -81044532 - AluY SINE Alu -4 307 154 23 68 0 0 chr15 4653386 4653430 -81042324 + AT_rich Low_complexity Low_complexity 1 44 0 257 135 19 0 chr15 4653448 4653500 -81042254 + (TA)n Simple_repeat Simple_repeat 2 54 0 341 312 127 12 chr15 4654134 4654307 -81041447 - HAL1 LINE L1 -605 1902 1710 842 168 15 0 chr15 4654338 4654475 -81041279 + MER2 DNA MER2_type 1 139 -206 282 242 45 15 chr15 4654470 4654536 -81041218 + MER2 DNA MER2_type 278 345 0 * 1904 171 68 11 chr15 4654567 4654936 -81040818 + MLT1B LTR MaLR 1 390 0 624 232 45 68 chr15 4655935 4656155 -81039599 + MER87 LTR ERV1 174 388 -153 2372 66 13 0 chr15 4656158 4656459 -81039295 - AluY SINE Alu -6 305 1 1276 162 42 37 chr15 4656460 4656701 -81039053 - MLT1D LTR MaLR -263 242 1 230 51 51 0 chr15 4657710 4657749 -81038005 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 1812 197 70 12 chr15 4657828 4658173 -81037581 + MLT1A1 LTR MaLR 1 365 0 284 309 62 0 chr15 4659822 4659903 -81035851 + MIR3 SINE MIR 108 193 -15 2182 98 18 0 chr15 4661891 4662176 -81033578 + AluSx SINE Alu 1 290 -22 423 250 9 9 chr15 4662213 4662321 -81033433 + MER3 DNA MER1_type 78 185 -24 387 41 0 0 chr15 4663771 4663820 -81031934 + (TC)n Simple_repeat Simple_repeat 2 50 0 297 0 0 0 chr15 4663819 4663852 -81031902 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 2177 152 6 30 chr15 4664649 4665010 -81030744 + THE1A LTR MaLR 4 355 0 468 181 0 0 chr15 4665381 4665453 -81030301 + AluJ/FLAM SINE Alu 2 73 -239 1493 197 100 3 chr15 4865753 4866228 -80829526 + L1MC4 LINE L1 5498 5782 -384 920 229 103 10 chr15 4866033 4866335 -80829419 + L1MB7 LINE L1 5846 6175 -9 * 2233 105 3 0 chr15 4866708 4867002 -80828752 - AluSx SINE Alu -17 295 1 1902 163 0 3 chr15 4867443 4867743 -80828011 + AluSx SINE Alu 1 299 -13 389 314 70 13 chr15 4867794 4868023 -80827731 - MIR SINE MIR 0 262 21 226 292 45 0 chr15 4868010 4868099 -80827655 + MIR3 SINE MIR 94 186 -22 * 2044 102 74 34 chr15 4868680 4869004 -80826750 + MER1B DNA MER1_type 1 337 0 3634 200 56 122 chr15 4869520 4869996 -80825758 + L1M2 LINE L1 2296 2802 -3344 1743 184 14 3 chr15 4869996 4870279 -80825475 - AluJo SINE Alu -20 292 7 3634 200 56 122 chr15 4870279 4870409 -80825345 + L1M2 LINE L1 2802 2939 -3207 2306 114 0 0 chr15 4870409 4870706 -80825048 - AluSg SINE Alu -13 297 1 3634 200 56 122 chr15 4870706 4871596 -80824158 + L1M2 LINE L1 2939 3695 -2451 861 156 4 24 chr15 4871596 4871841 -80823913 + GA-rich Low_complexity Low_complexity 1 240 0 292 141 13 103 chr15 4871841 4871919 -80823835 + L1P LINE L1 3673 3743 -2403 * 6443 20 0 0 chr15 4871917 4872654 -80823100 - L1PA3 LINE L1 -1137 5009 4273 7918 23 0 0 chr15 4872657 4873804 -80821950 + L1PA3 LINE L1 5005 6151 -4 8773 167 17 11 chr15 4873806 4875825 -80819929 + L1M2 LINE L1 3736 5764 -548 1192 211 53 43 chr15 4876038 4876091 -80819663 + L1MEc LINE L1 1925 1976 -4420 1896 132 0 51 chr15 4876091 4876402 -80819352 + AluY SINE Alu 2 296 -15 1192 211 53 43 chr15 4876402 4876746 -80819008 + L1MEc LINE L1 1976 2326 -4070 1491 128 21 4 chr15 4876755 4876989 -80818765 - Tigger5 DNA MER2_type -1 2322 2085 339 219 0 0 chr15 4877008 4877072 -80818682 - Tigger5 DNA MER2_type -2259 64 1 2160 108 10 3 chr15 4877117 4877412 -80818342 + AluSq SINE Alu 1 297 -16 1958 232 80 5 chr15 4877448 4878086 -80817668 + L1MEc LINE L1 2356 3000 -3215 1593 182 29 66 chr15 4878094 4878474 -80817280 - MLT1A2 LTR MaLR -8 366 1 239 180 0 0 chr15 4878474 4878524 -80817230 + L1MEc LINE L1 2996 3045 -3170 624 248 33 26 chr15 4878534 4878687 -80817067 - MER58B DNA MER1_type 0 341 188 6729 232 57 23 chr15 4878711 4880717 -80815037 + L1MEc LINE L1 3050 5123 -1092 2061 132 0 4 chr15 4881338 4881618 -80814136 - AluSx SINE Alu -33 279 1 5889 150 17 21 chr15 4881895 4882933 -80812821 + L1PB3 LINE L1 4125 5166 -988 2106 106 0 14 chr15 4882933 4883217 -80812537 + AluSx SINE Alu 1 280 -32 558 0 0 0 chr15 4883220 4883282 -80812472 + (TAAAA)n Simple_repeat Simple_repeat 2 63 0 5889 150 17 21 chr15 4883282 4884276 -80811478 + L1PB3 LINE L1 5168 6152 -2 22 0 0 0 chr15 4886182 4886204 -80809550 + AT_rich Low_complexity Low_complexity 1 22 0 2459 255 97 19 chr15 4886647 4887451 -80808303 - L1M4 LINE L1 -5675 867 1 889 169 20 0 chr15 4888435 4888583 -80807171 - FRAM SINE Alu -25 151 1 2332 109 27 29 chr15 4892899 4893275 -80802479 + THE1C LTR MaLR 1 375 0 369 289 8 16 chr15 4893624 4893745 -80802009 + (CATA)n Simple_repeat Simple_repeat 1 120 0 522 191 0 53 chr15 4893747 4893935 -80801819 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 180 200 0 0 chr15 4893958 4893998 -80801756 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 822 163 0 33 chr15 4896264 4896417 -80799337 + FAM SINE Alu 1 49 0 2093 117 11 0 chr15 4896424 4896731 -80799023 + AluSp SINE Alu 1 310 0 2007 86 7 15 chr15 4897431 4897700 -80798054 - AluSx SINE Alu -7 305 39 1940 151 3 20 chr15 4897713 4898017 -80797737 - AluJo SINE Alu -13 299 1 4511 206 67 14 chr15 4898032 4898995 -80796759 - L1MB4 LINE L1 -1 6179 5268 1862 172 14 0 chr15 4898995 4899291 -80796463 - AluJb SINE Alu -12 300 1 4511 206 67 14 chr15 4899291 4900429 -80795325 - L1MB4 LINE L1 -912 5268 3964 396 285 111 12 chr15 4900661 4900833 -80794921 + MER5A DNA MER1_type 1 189 0 924 271 93 22 chr15 4901364 4901815 -80793939 + LTR33 LTR ERVL 37 519 -2 987 169 94 155 chr15 4902438 4902916 -80792838 + L1MEc LINE L1 1744 2192 -4204 1386 231 41 66 chr15 4903022 4903581 -80792173 + L1MEc LINE L1 2154 2668 -3547 1975 132 0 44 chr15 4905471 4905809 -80789945 - AluSx SINE Alu 0 325 1 616 232 58 0 chr15 4906300 4906455 -80789299 - L1ME3A LINE L1 -228 5942 5779 8123 212 36 37 chr15 4906455 4907856 -80787898 - L1MDa LINE L1 -1829 4815 3403 1925 162 7 76 chr15 4907856 4908094 -80787660 - MLT1B LTR MaLR 0 390 192 2306 112 3 0 chr15 4908094 4908399 -80787355 - AluSg SINE Alu -4 306 1 1925 162 7 76 chr15 4908399 4908579 -80787175 - MLT1B LTR MaLR -198 192 1 8123 212 36 37 chr15 4908579 4909357 -80786397 - L1MDa LINE L1 -3241 3403 2626 277 250 0 0 chr15 4909411 4909471 -80786283 - L1MDa LINE L1 -5833 709 650 258 165 46 9 chr15 4910048 4910157 -80785597 + GA-rich Low_complexity Low_complexity 2 114 0 295 236 76 35 chr15 4910405 4910549 -80785205 + MIR SINE MIR 113 262 0 762 284 25 80 chr15 4911826 4912315 -80783439 + L1ME4a LINE L1 5613 6074 -47 1731 175 3 7 chr15 4913367 4913659 -80782095 - AluJb SINE Alu -21 291 1 1356 180 73 38 chr15 4913849 4914138 -80781616 - AluJo SINE Alu -13 299 1 2403 82 3 31 chr15 4915330 4915649 -80780105 - AluSg SINE Alu 0 310 1 1008 106 35 0 chr15 4916384 4916554 -80779200 + MER20 DNA MER1_type 44 219 0 2865 117 144 14 chr15 4916815 4917377 -80778377 - LTR24C LTR ERV1 0 635 1 852 140 129 0 chr15 4918510 4918681 -80777073 - MER3 DNA MER1_type -16 193 1 2289 116 0 0 chr15 4919177 4919478 -80776276 + AluSx SINE Alu 10 310 -2 269 286 92 0 chr15 4922338 4922436 -80773318 - L2 LINE L2 -5 3308 3202 182 269 167 0 chr15 4924071 4924149 -80771605 + L2 LINE L2 3220 3310 -3 269 258 11 65 chr15 4924171 4924357 -80771397 + (TG)n Simple_repeat Simple_repeat 1 176 0 428 270 51 15 chr15 4926064 4926260 -80769494 - L1MCc LINE L1 -5080 1343 1141 270 301 29 19 chr15 4926545 4926648 -80769106 - L1MCc LINE L1 -5702 720 617 228 188 24 35 chr15 4928866 4928951 -80766803 + CT-rich Low_complexity Low_complexity 3 86 0 385 273 128 14 chr15 4929048 4929325 -80766429 - MER39 LTR ERV1 -4 642 397 29 0 0 0 chr15 4931336 4931365 -80764389 + AT_rich Low_complexity Low_complexity 1 29 0 1707 166 3 14 chr15 4931370 4931659 -80764095 - AluJo SINE Alu -24 288 3 303 269 10 10 chr15 4931711 4931815 -80763939 + MER69 DNA AcHobo 2422 2525 -1 1518 198 106 25 chr15 4932408 4932767 -80762987 - MLT1B LTR MaLR 0 390 3 184 252 15 114 chr15 4933654 4933785 -80761969 + MIR SINE MIR 65 182 -80 433 240 79 104 chr15 4934446 4934800 -80760954 - MER68 LTR ERV1 -150 412 68 246 47 0 70 chr15 4935552 4935595 -80760159 - LTR10C LTR ERV1 -440 151 112 815 195 31 22 chr15 4935896 4936171 -80759583 - L1MC/D LINE L1 -743 5403 5188 243 100 25 0 chr15 4936181 4936221 -80759533 - Alu SINE Alu -262 41 1 2130 130 3 7 chr15 4936221 4936520 -80759234 - AluSx SINE Alu -14 298 1 346 261 109 51 chr15 4936523 4936661 -80759093 - L1MC/D LINE L1 -1015 5131 4986 678 165 0 0 chr15 4936662 4936771 -80758983 - FRAM SINE Alu -5 171 63 2077 161 29 5 chr15 4939032 4939411 -80756343 - MLT1B LTR MaLR 0 390 3 270 252 8 138 chr15 4939923 4939979 -80755775 - MIR SINE MIR -128 134 101 2331 67 3 33 chr15 4939979 4940279 -80755475 - AluY SINE Alu -20 291 1 270 252 8 138 chr15 4940279 4940345 -80755409 - MIR SINE MIR -161 101 28 307 279 73 50 chr15 4940688 4940867 -80754887 + MIR SINE MIR 58 240 -22 2213 125 0 0 chr15 4941726 4942021 -80753733 + AluSg SINE Alu 1 295 -15 1608 59 0 0 chr15 4942955 4943164 -80752590 + AluSg/x SINE Alu 98 306 0 222 314 157 7 chr15 4943355 4943508 -80752246 - MER5B DNA MER1_type 0 178 3 635 237 63 5 chr15 4943536 4943726 -80752028 + L1MA4 LINE L1 6086 6286 -14 4679 265 74 23 chr15 4945576 4947290 -80748464 + L1MEc LINE L1 38 1845 -4551 2403 73 0 13 chr15 4947290 4947591 -80748163 + AluY SINE Alu 1 297 -14 4679 265 74 23 chr15 4947591 4947641 -80748113 + L1MEc LINE L1 1845 1891 -4505 661 209 70 50 chr15 4948235 4948436 -80747318 + ORSL DNA AcHobo 30 234 -41 2376 71 20 3 chr15 4950208 4950504 -80745250 - AluY SINE Alu -8 303 3 2287 226 81 59 chr15 4951046 4952096 -80743658 - L1MC/D LINE L1 -1272 4874 3802 892 235 35 48 chr15 4952090 4952380 -80743374 - L1MC/D LINE L1 -3101 3045 2753 * 396 0 0 0 chr15 4952380 4952424 -80743330 + (TG)n Simple_repeat Simple_repeat 1 44 0 1995 141 0 0 chr15 4952424 4952701 -80743053 - AluSx SINE Alu -33 279 3 892 235 35 48 chr15 4952701 4952784 -80742970 - L1MC/D LINE L1 -3391 2755 2676 4771 59 2 7 chr15 4953353 4953947 -80741807 - LTR10C LTR ERV1 0 591 1 374 212 59 12 chr15 4953989 4954074 -80741680 + L2 LINE L2 3222 3310 -3 2258 81 28 3 chr15 4954376 4954661 -80741093 - AluSg SINE Alu -18 292 1 491 305 53 0 chr15 4955960 4956111 -80739643 - MIR SINE MIR -35 227 69 730 222 116 81 chr15 4956276 4956646 -80739108 + MLT1D LTR MaLR 1 383 -122 186 43 0 0 chr15 4956948 4956971 -80738783 + (AGCTG)n Simple_repeat Simple_repeat 2 24 0 381 305 6 0 chr15 4957241 4957418 -80738336 + (TG)n Simple_repeat Simple_repeat 2 179 0 303 280 5 0 chr15 4957436 4957638 -80738116 + (TG)n Simple_repeat Simple_repeat 1 203 0 776 85 78 8 chr15 4960689 4960818 -80734936 - L1MA9 LINE L1 -382 5930 5793 279 114 0 0 chr15 4960818 4960862 -80734892 + (TG)n Simple_repeat Simple_repeat 1 44 0 549 260 26 13 chr15 4960965 4961196 -80734558 - L1M4 LINE L1 -2823 3323 3090 355 227 57 34 chr15 4961196 4961284 -80734470 + L1M LINE L1 5308 5397 -765 2213 109 0 3 chr15 4961289 4961615 -80734139 + AluSx SINE Alu 1 325 0 226 274 27 14 chr15 4962785 4962858 -80732896 - MER5A DNA MER1_type -34 155 82 308 172 0 17 chr15 4962871 4962929 -80732825 - MLT1I LTR MaLR -7 402 346 3621 250 83 22 chr15 4963235 4964943 -80730811 - L1MEc LINE L1 -2392 3823 2060 369 253 0 0 chr15 4964946 4965029 -80730725 - L1MEc LINE L1 -4371 2025 1943 225 98 59 20 chr15 4965416 4965467 -80730287 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 38 39 0 0 chr15 4965536 4965588 -80730166 + AT_rich Low_complexity Low_complexity 1 52 0 186 71 0 0 chr15 4965588 4965616 -80730138 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 7684 44 14 0 chr15 4965620 4966643 -80729111 - L1PA7 LINE L1 -13 6141 5114 2039 119 0 11 chr15 4966643 4966928 -80728826 - AluSx SINE Alu -11 301 20 357 43 0 0 chr15 4966930 4966977 -80728777 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 195 274 124 66 chr15 4967302 4967543 -80728211 - L2 LINE L2 -820 2494 2240 2331 52 0 0 chr15 4969359 4969628 -80726126 - L1PA5 LINE L1 -3 6151 5883 183 322 69 75 chr15 4970083 4970257 -80725497 - MIR SINE MIR -30 232 60 205 250 73 0 chr15 4971100 4971168 -80724586 - MIR SINE MIR -69 139 67 2268 99 3 0 chr15 4971209 4971503 -80724251 - AluSp SINE Alu -18 295 1 428 143 0 39 chr15 4971798 4971875 -80723879 - AluJ/FLAM SINE Alu -221 91 18 420 20 0 0 chr15 4973409 4973458 -80722296 + (TG)n Simple_repeat Simple_repeat 1 49 0 2652 97 26 3 chr15 4973458 4973810 -80721944 + L1PB1 LINE L1 5792 6151 0 1947 150 6 13 chr15 4974590 4974903 -80720851 + AluSx SINE Alu 2 312 0 2120 127 0 10 chr15 4977890 4978189 -80717565 - AluSx SINE Alu -16 296 1 218 292 14 0 chr15 4978238 4978310 -80717444 + (ATATG)n Simple_repeat Simple_repeat 3 75 0 908 266 117 5 chr15 4978475 4978800 -80716954 - L1MD2 LINE L1 0 6166 5819 2022 133 13 3 chr15 4978804 4979112 -80716642 + AluJb SINE Alu 1 311 -1 528 295 18 26 chr15 4979123 4979350 -80716404 - L1MD2 LINE L1 -455 5711 5487 3794 142 30 2 chr15 4980305 4980891 -80714863 - MER39B LTR ERV1 -3 650 43 3152 111 9 2 chr15 4980891 4981322 -80714432 - MER57B LTR ERV1 0 434 1 3794 142 30 2 chr15 4981322 4981362 -80714392 - MER39B LTR ERV1 -610 43 6 327 172 0 0 chr15 4981536 4981594 -80714160 - MER57B LTR ERV1 -376 58 1 344 48 0 0 chr15 4981594 4981636 -80714118 - MER39B LTR ERV1 -608 45 4 * 837 251 39 39 chr15 4981636 4981935 -80713819 - MER46C DNA MER2_type -39 299 1 266 214 66 88 chr15 4982973 4983155 -80712599 - LTR8A LTR ERV1 -53 674 497 659 89 50 0 chr15 4983289 4983390 -80712364 - AluSp SINE Alu -206 107 2 1651 138 57 40 chr15 4983488 4983786 -80711968 + AluSx SINE Alu 5 307 -5 439 279 44 33 chr15 4983812 4984065 -80711689 + L1MA10 LINE L1 5915 6321 0 2403 232 29 9 chr15 4984837 4985502 -80710252 - L1M4c LINE L1 -3181 3201 2524 381 304 60 36 chr15 4985514 4986002 -80709752 - L1M4c LINE L1 -3947 2437 1990 1113 133 12 6 chr15 4986006 4986179 -80709575 + Tigger2 DNA MER2_type 1 174 -2544 5666 123 13 54 chr15 4986180 4987582 -80708172 + L1PA13 LINE L1 4795 6159 -4 297 68 0 0 chr15 4987662 4987706 -80708048 + (CA)n Simple_repeat Simple_repeat 2 45 0 3397 149 53 0 chr15 4987726 4988289 -80707465 + Tigger2 DNA MER2_type 165 757 -1961 738 99 0 0 chr15 4988343 4988454 -80707300 + Tigger2 DNA MER2_type 2461 2571 -147 1331 168 4 9 chr15 4988455 4988681 -80707073 + AluJb SINE Alu 72 296 -16 930 176 7 0 chr15 4988683 4988836 -80706918 + Tigger2 DNA MER2_type 2561 2714 -4 210 37 0 0 chr15 4988839 4988866 -80706888 + (TG)n Simple_repeat Simple_repeat 2 28 0 1674 255 63 74 chr15 4988866 4989923 -80705831 - L1M4c LINE L1 -4573 1811 766 877 236 31 49 chr15 4989986 4990344 -80705410 - L1M4 LINE L1 -3738 3219 2869 522 211 0 0 chr15 4990330 4990425 -80705329 - L1M4 LINE L1 -5723 1136 1042 * 4491 137 3 13 chr15 4990436 4991124 -80704630 - L1MC1 LINE L1 -17 6316 5636 523 343 53 20 chr15 4992686 4992931 -80702823 + MIR SINE MIR 10 262 0 9002 183 31 2 chr15 4993769 4996189 -80699565 - L1PA15 LINE L1 0 6165 3681 561 68 0 0 chr15 4996189 4996263 -80699491 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 9002 183 31 2 chr15 4996263 4996293 -80699461 - L1PA15 LINE L1 -2484 3681 3653 432 232 20 10 chr15 4996500 4996599 -80699155 + L1MEd LINE L1 654 753 -5366 4876 229 87 50 chr15 4996723 4998245 -80697509 - L1MC4a LINE L1 -1 7807 6229 2030 142 49 30 chr15 4998258 4998624 -80697130 + MSTB1 LTR MaLR 1 373 -59 1243 166 45 14 chr15 4998625 4998848 -80696906 - AluJb SINE Alu -1 311 82 354 88 53 0 chr15 4998848 4998905 -80696849 + MSTB1 LTR MaLR 371 430 -2 2475 279 81 32 chr15 4998910 4999079 -80696675 - L1MC4a LINE L1 -755 5391 5232 2254 110 7 3 chr15 4999079 4999388 -80696366 - AluSg SINE Alu 0 310 1 2475 279 81 32 chr15 4999388 5000997 -80694757 - L1MC4a LINE L1 -914 5232 4296 2286 204 58 49 chr15 5001029 5001583 -80694171 + MER68 LTR ERV1 4 562 0 255 242 8 94 chr15 5001593 5001721 -80694033 - L1P LINE L1 -2082 4064 3948 3788 141 10 7 chr15 5001825 5002421 -80693333 - LTR8A LTR ERV1 -129 598 1 5024 138 65 32 chr15 5002546 5002931 -80692823 - MER4D LTR ERV1 0 903 532 642 24 0 24 chr15 5002931 5003013 -80692741 - L1PA2 LINE L1 0 6155 6076 5024 138 65 32 chr15 5003013 5003501 -80692253 - MER4D LTR ERV1 -371 532 1 312 120 0 0 chr15 5003744 5003794 -80691960 + (TATAA)n Simple_repeat Simple_repeat 4 53 0 2953 216 41 33 chr15 5003923 5004748 -80691006 - L1MB7 LINE L1 0 6682 5851 402 143 11 66 chr15 5007070 5007161 -80688593 + L1ME LINE L1 5374 5459 -703 2273 259 47 29 chr15 5008640 5009503 -80686251 + L1ME3A LINE L1 5089 5971 -199 240 238 48 32 chr15 5009984 5010047 -80685707 + MIR SINE MIR 167 230 -32 245 374 9 9 chr15 5010959 5011066 -80684688 + MIR SINE MIR 25 131 -77 286 124 11 56 chr15 5012550 5012639 -80683115 + (TATATG)n Simple_repeat Simple_repeat 2 86 0 664 180 81 62 chr15 5012652 5012730 -80683024 - L1MB4 LINE L1 -12 6168 6093 1519 200 102 31 chr15 5012730 5013150 -80682604 + LTR7 LTR ERV1 1 450 0 664 180 81 62 chr15 5013150 5013282 -80682472 - L1MB4 LINE L1 -87 6093 5954 1420 233 76 68 chr15 5013283 5014102 -80681652 - L1MB7 LINE L1 -992 5652 620 210 339 64 78 chr15 5014438 5014656 -80681098 + L2 LINE L2 3027 3241 -31 2315 77 10 13 chr15 5014981 5015280 -80680474 + AluSq SINE Alu 1 321 0 187 43 0 0 chr15 5015280 5015303 -80680451 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2736 221 30 25 chr15 5016067 5017352 -80678402 - L1ME1 LINE L1 -273 5893 4601 460 281 0 0 chr15 5017353 5017474 -80678280 + L1ME1 LINE L1 4462 4582 -1564 1760 268 47 38 chr15 5017483 5018017 -80677737 + MLT1E2 LTR MaLR 20 558 -68 622 255 25 12 chr15 5018032 5018275 -80677479 - L1ME1 LINE L1 -2811 3335 3090 2213 211 14 53 chr15 5018287 5018368 -80677386 + L1ME1 LINE L1 5314 5397 -769 2380 117 0 0 chr15 5018368 5018676 -80677078 + AluSx SINE Alu 1 308 -4 2213 211 14 53 chr15 5018676 5019157 -80676597 + L1ME1 LINE L1 5397 5854 -312 1865 90 4 0 chr15 5019157 5019391 -80676363 - AluSp SINE Alu -16 297 63 1296 274 60 49 chr15 5019495 5020491 -80675263 - L1M4 LINE L1 -2238 3908 2902 1995 148 51 21 chr15 5020644 5021017 -80674737 + MSTB1 LTR MaLR 1 384 -48 327 272 158 38 chr15 5021017 5021201 -80674553 - HAL1b LINE L1 -832 516 311 1662 123 8 11 chr15 5021477 5021745 -80674009 - L1MA4 LINE L1 -16 6284 6018 2475 83 0 0 chr15 5022611 5022912 -80672842 - AluSx SINE Alu -11 301 1 241 128 0 0 chr15 5024260 5024307 -80671447 + Alu SINE Alu 261 307 -1 245 276 60 26 chr15 5026043 5026159 -80669595 - L1ME LINE L1 -312 5809 5690 316 263 91 10 chr15 5026365 5026464 -80669290 - LTR33 LTR ERVL -313 208 102 790 342 75 37 chr15 5026851 5027188 -80668566 - ERVL LTR ERVL -462 5302 4979 4208 109 45 5 chr15 5027188 5027767 -80667987 - LTR43 LTR ERV1 0 602 1 790 342 75 37 chr15 5027767 5028187 -80667567 - ERVL LTR ERVL -785 4979 4516 518 231 0 0 chr15 5028354 5028461 -80667293 - MLT1D LTR MaLR -324 181 75 542 222 194 0 chr15 5028461 5028605 -80667149 - MLT1D LTR MaLR 0 505 334 1357 213 94 3 chr15 5028606 5028926 -80666828 - L1MDa LINE L1 -2253 4153 3805 2336 138 36 20 chr15 5029175 5029531 -80666223 - THE1B LTR MaLR -2 362 1 8161 86 15 85 chr15 5029536 5030582 -80665172 - THE1B-int LTR MaLR -6 1574 634 2314 97 0 0 chr15 5030582 5030881 -80664873 - AluY SINE Alu -12 299 1 8161 86 15 85 chr15 5030881 5031132 -80664622 - THE1B-int LTR MaLR -946 634 367 2964 66 8 0 chr15 5032128 5032506 -80663248 - THE1B-int LTR MaLR -1199 381 1 401 80 0 0 chr15 5032506 5032556 -80663198 - THE1B LTR MaLR 0 364 315 595 237 10 42 chr15 5032557 5032965 -80662789 + BSR/Beta Satellite Satellite 1 394 -60 598 199 35 59 chr15 5032984 5033201 -80662553 + BSR/Beta Satellite Satellite 1 211 -38 5739 93 94 29 chr15 5033597 5034683 -80661071 - MER11A LTR ERVK -5 1261 1 3396 271 28 9 chr15 5034690 5036034 -80659720 - L1MDa LINE L1 -2619 3787 2363 1138 227 97 25 chr15 5036036 5036357 -80659397 - MER2 DNA MER2_type -1 344 1 723 233 84 32 chr15 5036359 5036608 -80659146 - L1MDa LINE L1 -4044 2362 2101 2739 201 51 48 chr15 5036614 5036742 -80659012 - L1MDa LINE L1 -4366 2040 1914 2320 101 3 0 chr15 5036742 5037039 -80658715 - AluSc SINE Alu -11 298 1 2739 201 51 48 chr15 5037039 5037748 -80658006 - L1MDa LINE L1 -4492 1914 1200 328 171 48 4 chr15 5037756 5037838 -80657916 + MLT1A1 LTR MaLR 227 301 -73 189 258 32 65 chr15 5037860 5037953 -80657801 - MIR SINE MIR -77 131 42 212 323 20 40 chr15 5038727 5038826 -80656928 + L2 LINE L2 3019 3115 -157 185 179 0 54 chr15 5038982 5039038 -80656716 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 2770 210 74 7 chr15 5039129 5039734 -80656020 - L1MDa LINE L1 -5195 1214 569 524 147 0 74 chr15 5040091 5040186 -80655568 - THE1B LTR MaLR 0 364 277 902 217 82 25 chr15 5040423 5040522 -80655232 - L1MDa LINE L1 -6143 266 174 2524 87 25 33 chr15 5040522 5040889 -80654865 - THE1B LTR MaLR 0 364 1 902 217 82 25 chr15 5040889 5041033 -80654721 - L1MDa LINE L1 -6235 174 9 570 260 104 89 chr15 5041522 5042025 -80653729 + L2 LINE L2 2758 3291 -22 1740 169 23 10 chr15 5043364 5043666 -80652088 - AluJb SINE Alu -5 307 2 22 35 0 0 chr15 5043779 5043808 -80651946 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr15 5044277 5044298 -80651456 + AT_rich Low_complexity Low_complexity 1 21 0 517 268 100 52 chr15 5044352 5044811 -80650943 + L1ME LINE L1 3 483 -5587 1025 274 31 26 chr15 5045063 5045515 -80650239 + L1ME LINE L1 547 1000 -5070 2231 171 30 2 chr15 5045573 5045999 -80649755 + L1P LINE L1 2817 3254 -2892 1471 292 36 8 chr15 5096530 5097115 -80598639 - L1M4 LINE L1 -1418 4728 4128 3550 225 130 27 chr15 5097127 5098789 -80596965 - L1MDb LINE L1 -4541 1865 7 633 269 42 23 chr15 5099706 5099922 -80595832 - MER92C LTR ERV1 -27 527 308 2010 115 0 17 chr15 5099931 5100252 -80595502 - AluSg SINE Alu 0 316 1 4899 145 56 18 chr15 5100270 5100835 -80594919 - MER4D LTR ERV1 0 903 292 3425 133 27 15 chr15 5100835 5101382 -80594372 + MER41C LTR ERV1 1 554 0 4899 145 56 18 chr15 5101382 5101686 -80594068 - MER4D LTR ERV1 -611 292 1 305 263 26 53 chr15 5101686 5101782 -80593972 - MER92C LTR ERV1 -232 322 230 190 258 45 61 chr15 5105118 5105184 -80590570 + MIR SINE MIR 18 82 -180 188 243 114 0 chr15 5105857 5105927 -80589827 + MER5A DNA MER1_type 28 105 -84 242 248 142 64 chr15 5106469 5106650 -80589104 + Charlie2 DNA MER1_type 2591 2793 -69 2040 131 0 0 chr15 5106650 5106947 -80588807 + AluSx SINE Alu 1 297 -15 242 248 142 64 chr15 5106947 5106983 -80588771 + Charlie2 DNA MER1_type 2793 2825 -37 323 220 22 7 chr15 5107199 5107296 -80588458 - LTR30 LTR ERV1 -102 677 552 1690 116 141 48 chr15 5107299 5107700 -80588054 - pTR5 LTR ERV1 -436 2002 1 2472 104 52 0 chr15 5107700 5108047 -80587707 - HERV9 LTR ERV1 0 8399 8035 849 198 119 18 chr15 5108075 5108302 -80587452 - LTR32 LTR ERVL -51 420 171 589 179 71 50 chr15 5108611 5108751 -80587003 - LTR32 LTR ERVL -286 185 43 * 590 215 87 0 chr15 5108749 5108944 -80586810 + Charlie5 DNA MER1_type 2378 2589 -23 3985 126 5 44 chr15 5109011 5109289 -80586465 + MER41B LTR ERV1 1 288 -347 4384 100 28 15 chr15 5109289 5109941 -80585813 - PABL_A LTR ERV1 0 660 1 3985 126 5 44 chr15 5109941 5110322 -80585432 + MER41B LTR ERV1 288 634 -1 563 265 45 54 chr15 5110353 5110576 -80585178 - MER58A DNA MER1_type -3 221 1 271 248 8 8 chr15 5110852 5110969 -80584785 + CT-rich Low_complexity Low_complexity 1 117 0 205 155 35 0 chr15 5111002 5111060 -80584694 + CT-rich Low_complexity Low_complexity 1 60 0 934 221 13 32 chr15 5111504 5111865 -80583889 - L1M LINE L1 -743 5403 5076 1040 187 21 0 chr15 5111988 5112187 -80583567 + L1PB4 LINE L1 5743 5949 -207 490 222 88 107 chr15 5112189 5112530 -80583224 - LTR58 LTR ERV1 0 670 350 316 224 90 0 chr15 5112728 5112795 -80582959 - LTR35 LTR ERV1 -543 75 3 1188 141 50 0 chr15 5112795 5112994 -80582760 + L1PB4 LINE L1 5948 6156 0 1974 234 64 84 chr15 5112996 5113056 -80582698 - L1MDa LINE L1 -1241 5299 5239 606 245 99 0 chr15 5113056 5113207 -80582547 + FAM SINE Alu 2 167 -8 1974 234 64 84 chr15 5113207 5114058 -80581696 - L1MDa LINE L1 -1301 5239 4407 2292 235 42 82 chr15 5114063 5114974 -80580780 - L1MDa LINE L1 -2450 4090 3261 185 32 0 65 chr15 5114974 5115005 -80580749 + (CAAAT)n Simple_repeat Simple_repeat 1 29 0 2292 235 42 82 chr15 5115005 5115577 -80580177 - L1MDa LINE L1 -3279 3261 2668 4059 188 92 11 chr15 5115590 5116587 -80579167 - L1MDa LINE L1 -4384 2156 1079 1461 232 118 25 chr15 5116586 5117060 -80578694 - L1MDa LINE L1 -6016 524 7 * 2296 115 0 10 chr15 5117548 5117860 -80577894 - AluSq SINE Alu -1 312 4 201 175 0 0 chr15 5118586 5118626 -80577128 + CT-rich Low_complexity Low_complexity 2 41 0 1009 257 113 22 chr15 5118642 5119878 -80575876 + L1ME3A LINE L1 4696 6152 -18 465 255 9 9 chr15 5119901 5120007 -80575747 + MER58A DNA MER1_type 37 142 0 300 262 12 12 chr15 5120089 5120173 -80575581 + (TG)n Simple_repeat Simple_repeat 2 85 0 203 276 10 0 chr15 5120186 5120284 -80575470 + (TATG)n Simple_repeat Simple_repeat 4 102 0 201 175 0 0 chr15 5120378 5120418 -80575336 + (TG)n Simple_repeat Simple_repeat 1 40 0 353 359 6 6 chr15 5120430 5120586 -80575168 + (TG)n Simple_repeat Simple_repeat 2 157 0 5236 211 58 27 chr15 5121248 5122514 -80573240 - L1MC3 LINE L1 -169 7616 6312 280 229 43 0 chr15 5122768 5122838 -80572916 - MIR SINE MIR -70 192 120 467 205 188 0 chr15 5122880 5122992 -80572762 - LTR40b LTR ERVL -18 444 312 900 237 34 17 chr15 5123018 5123254 -80572500 - LTR40b LTR ERVL -222 240 1 2221 110 3 0 chr15 5123544 5123834 -80571920 - AluSx SINE Alu -16 296 6 3739 133 38 0 chr15 5124157 5124736 -80571018 - LTR26 LTR ERV1 0 603 3 2345 94 3 7 chr15 5125787 5126096 -80569658 - AluSp SINE Alu -5 308 1 438 279 75 30 chr15 5126347 5126548 -80569206 - L1ME LINE L1 -481 5640 5431 582 60 0 0 chr15 5126980 5127063 -80568691 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 1797 147 3 18 chr15 5127064 5127350 -80568404 - AluSx SINE Alu -30 282 1 280 289 12 35 chr15 5127946 5128119 -80567635 + (GGGTG)n Simple_repeat Simple_repeat 2 170 0 1262 187 14 28 chr15 5128292 5128581 -80567173 + L1MA4 LINE L1 6009 6293 -7 237 221 0 0 chr15 5129039 5129107 -80566647 + (TG)n Simple_repeat Simple_repeat 1 68 0 248 263 0 0 chr15 5130671 5130747 -80565007 - MIR SINE MIR -110 152 77 6587 164 19 11 chr15 5130964 5133180 -80562574 - L1PB2 LINE L1 0 6151 3920 249 309 12 0 chr15 5133985 5134066 -80561688 - L3 LINE CR1 -150 1427 1346 182 266 0 31 chr15 5137621 5137685 -80558069 + L2 LINE L2 3111 3172 -141 189 0 0 0 chr15 5137853 5137874 -80557880 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 3681 217 52 22 chr15 5138015 5139362 -80556392 - L1M4 LINE L1 -2427 3955 2387 1950 95 4 0 chr15 5139362 5139614 -80556140 - AluSq SINE Alu 0 313 61 3681 217 52 22 chr15 5139614 5139974 -80555780 - L1M4 LINE L1 -3995 2387 2039 2135 241 88 60 chr15 5139988 5140172 -80555582 - L1M4 LINE L1 -4966 1314 1137 1421 151 12 8 chr15 5140172 5140424 -80555330 - L1MB3 LINE L1 0 6183 5931 2135 241 88 60 chr15 5140424 5141031 -80554723 - L1M4 LINE L1 -5143 1137 548 362 69 17 0 chr15 5141031 5141089 -80554665 + (TG)n Simple_repeat Simple_repeat 2 60 0 2135 241 88 60 chr15 5141089 5141431 -80554323 - L1M4 LINE L1 -5732 548 104 1519 210 92 16 chr15 5141431 5141864 -80553890 + MLT1C LTR MaLR 2 467 0 2135 241 88 60 chr15 5141864 5141966 -80553788 - L1M4 LINE L1 -6176 104 6 331 306 24 16 chr15 5141977 5142101 -80553653 + L2 LINE L2 3184 3308 -5 308 176 30 5 chr15 5143617 5143698 -80552056 - MLT1H LTR MaLR -385 164 41 7892 19 2 0 chr15 5144180 5145329 -80550425 - L1PA2 LINE L1 0 6155 5004 2042 30 0 0 chr15 5145329 5145565 -80550189 + L1PA2 LINE L1 4778 5013 -1133 210 319 103 36 chr15 5145764 5145932 -80549822 + MIR SINE MIR 8 188 -58 944 199 0 6 chr15 5147924 5148105 -80547649 - L1MB3 LINE L1 -7 6176 5997 284 293 30 10 chr15 5151681 5151780 -80543974 - L1ME4a LINE L1 -57 6064 5964 521 307 164 17 chr15 5151824 5152355 -80543399 - L1ME4a LINE L1 -226 5895 5287 2399 213 59 0 chr15 5152517 5153023 -80542731 - L1MD1 LINE L1 0 6242 5707 1232 237 26 66 chr15 5153030 5153532 -80542222 - L1ME4a LINE L1 -919 5227 4746 250 286 87 29 chr15 5153633 5154150 -80541604 - L1ME4a LINE L1 -2794 3352 2806 367 336 69 30 chr15 5154198 5154531 -80541223 - L1ME4a LINE L1 -3461 2685 2340 307 278 61 51 chr15 5155174 5155469 -80540285 - HAL1b LINE L1 -745 603 306 195 42 0 0 chr15 5156142 5156166 -80539588 + (T)n Simple_repeat Simple_repeat 1 24 0 279 133 13 40 chr15 5157599 5157674 -80538080 + A-rich Low_complexity Low_complexity 3 75 0 1134 138 37 0 chr15 5158166 5158354 -80537400 - L1M3 LINE L1 -359 5812 5618 7342 223 64 47 chr15 5158356 5159981 -80535773 - L1M3 LINE L1 -725 5441 3844 2214 98 41 0 chr15 5159981 5160276 -80535478 - AluSc SINE Alu -1 308 2 7342 223 64 47 chr15 5160276 5160587 -80535167 - L1M3 LINE L1 -2322 3844 3540 1802 179 3 10 chr15 5160587 5160877 -80534877 - AluJb SINE Alu -24 288 1 7342 223 64 47 chr15 5160877 5161565 -80534189 - L1M3 LINE L1 -2626 3540 2777 400 278 129 72 chr15 5161568 5161799 -80533955 + L2 LINE L2 2776 2992 -321 2080 102 0 0 chr15 5161799 5162065 -80533689 - AluSx SINE Alu -14 298 33 400 278 129 72 chr15 5162065 5162349 -80533405 + L2 LINE L2 2992 3313 0 187 301 64 55 chr15 5165966 5166185 -80529569 - L2 LINE L2 -711 2603 2383 23 0 0 0 chr15 5168131 5168154 -80527600 + AT_rich Low_complexity Low_complexity 1 23 0 232 190 35 0 chr15 5169265 5169323 -80526431 + GA-rich Low_complexity Low_complexity 3 62 0 225 154 0 0 chr15 5169324 5169363 -80526391 + A-rich Low_complexity Low_complexity 4 42 0 1041 268 77 18 chr15 5169908 5170367 -80525387 - L1ME1 LINE L1 -22 6144 5663 23 0 0 0 chr15 5170442 5170465 -80525289 + AT_rich Low_complexity Low_complexity 1 23 0 1419 188 0 0 chr15 5170468 5170713 -80525041 + AluJo SINE Alu 1 245 -67 245 230 50 30 chr15 5171104 5171219 -80524535 - MLT1H LTR MaLR 0 590 437 237 258 52 52 chr15 5171392 5171489 -80524265 - MLT1G1 LTR MaLR -498 97 1 292 212 0 15 chr15 5171537 5171603 -80524151 + MLT1K LTR MaLR 524 588 0 2609 241 35 52 chr15 5172042 5172788 -80522966 - MER21B LTR ERV1 -112 751 19 1795 119 60 11 chr15 5173621 5173906 -80521848 + AluSx SINE Alu 1 299 -13 2133 94 0 0 chr15 5175433 5175720 -80520034 - AluSc SINE Alu -8 301 15 312 304 64 41 chr15 5176106 5176326 -80519428 - L1MEd LINE L1 -2884 3245 3021 235 258 88 25 chr15 5176616 5176775 -80518979 - L1M4 LINE L1 -1437 4709 4541 282 294 178 33 chr15 5176804 5176984 -80518770 - ERVL LTR ERVL -3174 2590 2385 227 290 21 43 chr15 5177253 5177346 -80518408 - LTR67 LTR ERVL -389 168 78 303 248 53 60 chr15 5177388 5177521 -80518233 - L1MEd LINE L1 -5031 1088 957 322 268 192 56 chr15 5180296 5180361 -80515393 + MIR SINE MIR 8 63 -199 216 0 0 0 chr15 5180361 5180385 -80515369 + (TG)n Simple_repeat Simple_repeat 1 24 0 322 268 192 56 chr15 5180385 5180517 -80515237 + MIR SINE MIR 63 232 -30 32 43 0 0 chr15 5182088 5182134 -80513620 + AT_rich Low_complexity Low_complexity 1 46 0 23 88 0 0 chr15 5182181 5182215 -80513539 + AT_rich Low_complexity Low_complexity 1 34 0 1411 216 126 10 chr15 5182649 5183707 -80512047 - L1ME1 LINE L1 -29 6137 4853 6853 259 82 41 chr15 5183909 5187346 -80508408 + L1M4c LINE L1 1515 5194 -1188 2746 207 23 16 chr15 5187352 5187966 -80507788 - L1MB5 LINE L1 -213 5961 5344 1047 180 0 0 chr15 5187963 5188157 -80507597 - L1M4 LINE L1 -361 5813 5620 * 1642 269 93 22 chr15 5188155 5189411 -80506343 - L1MCc LINE L1 -4762 2179 830 429 342 66 35 chr15 5189529 5190012 -80505742 - L1MCc LINE L1 -5886 537 40 209 275 208 13 chr15 5190473 5190622 -80505132 + L2 LINE L2 3135 3312 -1 346 305 23 23 chr15 5191356 5191487 -80504267 + L2 LINE L2 3182 3312 -1 263 297 27 63 chr15 5191492 5191603 -80504151 + MIR3 SINE MIR 96 202 -6 327 340 149 18 chr15 5192019 5192348 -80503406 + L3 LINE CR1 1103 1474 -103 382 215 68 61 chr15 5192681 5192844 -80502910 - MER103 DNA DNA -2 164 1 718 127 25 0 chr15 5193382 5193500 -80502254 - L1MB1 LINE L1 0 6168 6048 2848 221 18 15 chr15 5193500 5194305 -80501449 + L1M4c LINE L1 2244 3058 -3324 274 305 78 39 chr15 5194394 5194522 -80501232 + MIR SINE MIR 112 244 -18 239 265 12 12 chr15 5197035 5197118 -80498636 + GA-rich Low_complexity Low_complexity 1 83 0 1381 217 95 0 chr15 5197435 5197781 -80497973 + MLT1B LTR MaLR 1 379 -11 402 39 0 0 chr15 5198290 5198342 -80497412 + (CA)n Simple_repeat Simple_repeat 2 53 0 1668 181 28 39 chr15 5198424 5198811 -80496943 - MLT1B LTR MaLR -7 383 1 668 243 64 40 chr15 5199679 5199881 -80495873 + MIR SINE MIR 56 262 0 2217 92 7 3 chr15 5200537 5200843 -80494911 - AluSc SINE Alu -2 307 1 189 154 0 0 chr15 5201064 5201103 -80494651 + (TAG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr15 5201997 5202018 -80493736 + AT_rich Low_complexity Low_complexity 1 21 0 194 88 0 29 chr15 5202256 5202290 -80493464 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 881 173 0 14 chr15 5202292 5202661 -80493093 + GA-rich Low_complexity Low_complexity 1 363 0 1056 214 97 35 chr15 5203786 5204076 -80491678 + MER92B LTR ERV1 1 308 -328 876 197 25 25 chr15 5204144 5204347 -80491407 + MER92B LTR ERV1 434 636 0 248 118 0 171 chr15 5205364 5205440 -80490314 - LTR39 LTR ERV1 -720 63 1 913 96 0 7 chr15 5205828 5205963 -80489791 - L1PB1 LINE L1 0 6151 6018 1434 176 32 22 chr15 5206769 5207082 -80488672 - LTR23 LTR ERV1 0 437 122 194 294 120 11 chr15 5207676 5207768 -80487986 + MIR SINE MIR 31 132 -130 1547 135 52 11 chr15 5208941 5209208 -80486546 + AluSx SINE Alu 17 294 -18 517 273 87 6 chr15 5209349 5209510 -80486244 - MIR SINE MIR -41 221 48 311 288 102 34 chr15 5209593 5209770 -80485984 + MIR SINE MIR 61 249 -13 189 121 69 138 chr15 5211431 5211489 -80484265 + L2 LINE L2 2314 2367 -947 218 173 58 58 chr15 5212739 5212791 -80482963 + MIR SINE MIR 23 74 -134 2365 70 0 13 chr15 5213328 5213642 -80482112 - AluY SINE Alu -1 310 1 201 342 75 20 chr15 5213841 5214136 -80481618 + L2 LINE L2 865 1263 -2051 196 267 33 17 chr15 5214507 5214567 -80481187 + L2 LINE L2 1377 1437 -1877 184 282 39 0 chr15 5214667 5214745 -80481009 + L2 LINE L2 1610 1690 -1624 246 296 12 0 chr15 5215642 5215723 -80480031 + L2 LINE L2 2813 2894 -419 3045 181 8 2 chr15 5215726 5216262 -80479492 + L1PA16 LINE L1 5617 6155 -11 302 384 23 9 chr15 5216395 5216614 -80479140 + HERV16 LTR ERVL 1258 1479 -3517 691 325 62 19 chr15 5216748 5217167 -80478587 + HERV16 LTR ERVL 1785 2221 -3543 1345 331 41 20 chr15 5217250 5217909 -80477845 + HERV16 LTR ERVL 2930 3602 -2162 295 315 45 0 chr15 5220726 5220815 -80474939 + MIR3 SINE MIR 111 203 -5 644 190 22 0 chr15 5221313 5221450 -80474304 - L1MA10 LINE L1 0 6334 6195 788 242 41 0 chr15 5221460 5221654 -80474100 - L1M4 LINE L1 -538 5636 5435 2300 151 12 24 chr15 5221654 5222065 -80473689 - L1MB3 LINE L1 -1 6182 5777 180 357 108 8 chr15 5222268 5222397 -80473357 + L2 LINE L2 3127 3268 -4 2487 90 0 0 chr15 5223186 5223498 -80472256 + AluSx SINE Alu 1 312 0 1348 285 81 37 chr15 5224158 5224199 -80471555 - L1ME2 LINE L1 -195 5903 5865 2289 47 54 0 chr15 5224199 5224477 -80471277 - AluY SINE Alu -18 293 1 1348 285 81 37 chr15 5224477 5225116 -80470638 - L1ME2 LINE L1 -233 5865 5193 1484 276 161 29 chr15 5225123 5226173 -80469581 - L1ME2 LINE L1 -942 5138 3950 243 225 75 38 chr15 5226617 5226697 -80469057 - L1ME2 LINE L1 -5984 86 4 25 31 0 0 chr15 5226744 5226776 -80468978 + AT_rich Low_complexity Low_complexity 1 32 0 623 235 31 0 chr15 5226804 5226966 -80468788 - L1MA8 LINE L1 0 6291 6125 * 3331 230 24 25 chr15 5226965 5227168 -80468586 - L1M1 LINE L1 -4499 3066 2864 205 0 114 0 chr15 5227168 5227203 -80468551 + T-rich Low_complexity Low_complexity 2 40 0 3331 230 24 25 chr15 5227203 5228121 -80467633 - L1M1 LINE L1 -4701 2864 2019 2309 238 26 42 chr15 5228122 5228736 -80467018 - L1M1 LINE L1 -6419 1070 467 2005 135 28 0 chr15 5228762 5229051 -80466703 - AluSg SINE Alu -13 297 1 34 55 0 0 chr15 5229055 5229110 -80466644 + AT_rich Low_complexity Low_complexity 1 55 0 26 0 0 0 chr15 5229190 5229216 -80466538 + AT_rich Low_complexity Low_complexity 1 26 0 272 314 58 0 chr15 5229216 5229302 -80466452 - L2 LINE L2 -10 3303 3213 301 315 16 8 chr15 5231882 5232009 -80463745 - MLT1L LTR MaLR -5 610 483 1672 242 55 21 chr15 5232128 5232152 -80463602 + MER21B LTR ERV1 1 23 -840 414 0 0 0 chr15 5232152 5232198 -80463556 + (TA)n Simple_repeat Simple_repeat 2 47 0 1672 242 55 21 chr15 5232198 5232595 -80463159 + MER21B LTR ERV1 23 436 -427 1496 201 64 38 chr15 5232598 5233017 -80462737 + MER21B LTR ERV1 376 805 -58 238 200 0 0 chr15 5233159 5233204 -80462550 + MLT1D LTR MaLR 2 46 -459 279 243 27 10 chr15 5233332 5233428 -80462326 + MLT1D LTR MaLR 317 394 -111 228 200 0 0 chr15 5233439 5233479 -80462275 + MLT1D LTR MaLR 587 626 0 1686 227 107 71 chr15 5233482 5234102 -80461652 + MLT1D-int LTR MaLR 3 644 -727 1823 263 56 68 chr15 5234265 5234945 -80460809 + MLT1D-int LTR MaLR 692 1363 -8 578 189 9 0 chr15 5234967 5235073 -80460681 + MLT1D LTR MaLR 23 129 -376 249 310 26 9 chr15 5236032 5236145 -80459609 - MLT1J LTR MaLR -8 503 389 303 180 0 0 chr15 5236152 5236231 -80459523 - L1PA8A LINE L1 0 6131 6068 259 324 43 7 chr15 5236294 5236433 -80459321 - MLT1J LTR MaLR -314 197 54 2131 112 0 3 chr15 5236587 5236916 -80458838 - AluSx SINE Alu 0 328 1 2194 118 30 0 chr15 5237332 5237636 -80458118 - AluSq SINE Alu 0 313 1 1437 177 20 96 chr15 5238362 5238769 -80456985 + MLT1B LTR MaLR 8 383 -7 326 316 73 9 chr15 5239599 5239788 -80455966 - L2 LINE L2 -3 3310 3104 2103 132 6 3 chr15 5239788 5240099 -80455655 + AluSx SINE Alu 1 312 0 326 316 73 9 chr15 5240099 5240127 -80455627 - L2 LINE L2 -209 3104 3079 755 137 17 23 chr15 5240131 5240306 -80455448 + GA-rich Low_complexity Low_complexity 4 177 0 21 0 0 0 chr15 5241155 5241176 -80454578 + AT_rich Low_complexity Low_complexity 1 21 0 806 204 7 0 chr15 5241567 5241709 -80454045 - AluJb SINE Alu -34 278 136 540 277 26 0 chr15 5242099 5242114 -80453640 - L1MA10 LINE L1 0 6334 6320 324 249 175 35 chr15 5242114 5242368 -80453386 - L1ME2 LINE L1 -9 6155 5844 198 192 0 0 chr15 5242368 5242420 -80453334 + (TA)n Simple_repeat Simple_repeat 1 52 0 201 147 0 0 chr15 5242441 5242475 -80453279 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 31 44 0 0 chr15 5242520 5242565 -80453189 + AT_rich Low_complexity Low_complexity 1 45 0 373 224 96 8 chr15 5242649 5242774 -80452980 - L1ME2 LINE L1 -360 5806 5671 376 182 0 0 chr15 5242776 5242842 -80452912 + MSTC LTR MaLR 3 68 -360 971 235 41 26 chr15 5242980 5243248 -80452506 + MSTC LTR MaLR 157 428 0 390 158 162 77 chr15 5243248 5243407 -80452347 - L1ME2 LINE L1 -491 5675 5508 1016 218 46 46 chr15 5243434 5243737 -80452017 + MLT1B LTR MaLR 1 303 -87 264 113 0 48 chr15 5243891 5243953 -80451801 + (CAATA)n Simple_repeat Simple_repeat 1 59 0 3990 245 50 41 chr15 5245252 5246721 -80449033 + L1M4 LINE L1 2920 4402 -1744 2540 251 67 47 chr15 5246909 5248041 -80447713 + L1M4 LINE L1 3382 4536 -1610 991 273 50 14 chr15 5248019 5248382 -80447372 + L1MD2 LINE L1 5974 6349 -10 * 366 245 57 0 chr15 5249057 5249163 -80446591 - MLT1J LTR MaLR -342 169 58 299 231 74 65 chr15 5249455 5249492 -80446262 + MER5A DNA MER1_type 80 115 -74 3751 121 24 121 chr15 5249492 5250252 -80445502 - LTR12 LTR ERV1 0 688 3 299 231 74 65 chr15 5250252 5250322 -80445432 + MER5A DNA MER1_type 115 188 -1 300 340 26 26 chr15 5250501 5250657 -80445097 + L2 LINE L2 3116 3271 -1 1320 231 137 70 chr15 5250872 5251457 -80444297 - MLT1E2 LTR MaLR -2 624 1 1302 230 40 162 chr15 5251457 5252227 -80443527 - MLT1E2-int LTR MaLR 0 1371 696 2314 243 26 3 chr15 5252433 5253005 -80442749 - MLT1E2-int LTR MaLR -781 590 6 992 287 94 3 chr15 5253024 5253310 -80442444 - MLT1E2 LTR MaLR 0 626 315 810 193 37 32 chr15 5253290 5253477 -80442277 - MLT1E2 LTR MaLR -438 188 1 * 1628 290 55 70 chr15 5253511 5254448 -80441306 + L1M4 LINE L1 -260 662 -5618 673 94 10 10 chr15 5254448 5254544 -80441210 - MSTA LTR MaLR 0 428 333 450 68 122 40 chr15 5254550 5254624 -80441130 - THE1C LTR MaLR -295 80 1 2215 199 64 42 chr15 5254624 5255801 -80439953 + L1M4 LINE L1 658 2103 -4281 243 0 0 0 chr15 5257032 5257059 -80438695 + (T)n Simple_repeat Simple_repeat 1 27 0 663 280 125 11 chr15 5257212 5257491 -80438263 + L1ME3A LINE L1 5661 5971 -199 659 191 64 0 chr15 5258025 5258166 -80437588 - L1MB3 LINE L1 -7 6176 6027 21 0 0 0 chr15 5258602 5258623 -80437131 + AT_rich Low_complexity Low_complexity 1 21 0 2028 112 97 9 chr15 5259441 5259780 -80435974 - THE1C LTR MaLR -3 372 4 215 0 0 62 chr15 5259803 5259835 -80435919 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 181 264 97 0 chr15 5259889 5259961 -80435793 - MIR SINE MIR -77 185 107 188 268 0 0 chr15 5260776 5260817 -80434937 + MIR SINE MIR 216 256 -6 450 265 74 37 chr15 5261254 5261469 -80434285 + L1ME LINE L1 5532 5754 -367 3837 193 60 9 chr15 5261612 5262484 -80433270 + L1MA4A LINE L1 1 916 -5933 5957 150 28 25 chr15 5262484 5263827 -80431927 + L1MA4A LINE L1 5649 7005 0 207 279 124 90 chr15 5263996 5264197 -80431557 - L3 LINE CR1 -58 1519 1312 2023 174 61 30 chr15 5264871 5265278 -80430476 - MSTB LTR MaLR 0 426 7 464 304 34 14 chr15 5266570 5266718 -80429036 - L2 LINE L2 -1 3312 3162 217 145 32 0 chr15 5266764 5266826 -80428928 + (TA)n Simple_repeat Simple_repeat 2 65 0 424 213 40 29 chr15 5267726 5267900 -80427854 + (TG)n Simple_repeat Simple_repeat 1 176 0 308 152 70 13 chr15 5267941 5268099 -80427655 + (TG)n Simple_repeat Simple_repeat 1 167 0 3490 106 32 4 chr15 5268975 5269474 -80426280 - LTR10D LTR ERV1 0 513 1 1576 130 13 4 chr15 5269568 5269806 -80425948 - MSTA LTR MaLR 0 428 189 1170 96 0 24 chr15 5269808 5269974 -80425780 - AluSp SINE Alu -14 299 138 1293 132 10 5 chr15 5269975 5270172 -80425582 - MSTA LTR MaLR -230 198 1 * 2171 140 79 25 chr15 5270172 5270561 -80425193 - MSTC LTR MaLR -18 410 1 1362 214 60 3 chr15 5270586 5270885 -80424869 - MER58B DNA MER1_type 0 341 26 355 296 71 33 chr15 5271843 5272083 -80423671 + MER34B LTR ERV1 317 565 0 303 293 72 83 chr15 5274879 5275241 -80420513 - MLT1I LTR MaLR -2 407 50 450 284 14 27 chr15 5275439 5275587 -80420167 + MIR SINE MIR 63 208 -54 247 374 71 13 chr15 5276120 5276275 -80419479 - L2 LINE L2 0 3272 3109 549 200 0 10 chr15 5276294 5276394 -80419360 + MLT1A1 LTR MaLR 267 365 0 1300 194 145 17 chr15 5277374 5277959 -80417795 - LTR48 LTR ERV1 0 644 1 3173 128 41 41 chr15 5278889 5279497 -80416257 - MER4B LTR ERV1 0 779 1 2701 235 31 10 chr15 5280390 5280994 -80414760 + MER82 DNA MER2_type 26 642 -11 1072 213 39 67 chr15 5281048 5281264 -80414490 - MLT1A1 LTR MaLR -18 347 143 780 162 0 28 chr15 5281264 5281406 -80414348 + L1PA10 LINE L1 6025 6162 -6 1072 213 39 67 chr15 5281406 5281546 -80414208 - MLT1A1 LTR MaLR -222 143 1 302 212 40 22 chr15 5281893 5281986 -80413768 + MIR SINE MIR 63 158 -58 788 243 26 13 chr15 5281997 5282223 -80413531 - MER92B LTR ERV1 -15 621 393 955 196 174 42 chr15 5282261 5282526 -80413228 - MER92B LTR ERV1 -336 300 1 212 300 80 10 chr15 5282527 5282627 -80413127 + MIR SINE MIR 156 262 0 1121 169 0 5 chr15 5283077 5283266 -80412488 + AluJo SINE Alu 86 273 -39 327 234 0 0 chr15 5283306 5283370 -80412384 + L1MC4 LINE L1 6640 6703 -1339 524 234 85 21 chr15 5284531 5284672 -80411082 + MIR SINE MIR 107 256 -6 1009 275 66 22 chr15 5285063 5285470 -80410284 + LTR37A LTR ERV1 1 425 -1 1313 203 14 10 chr15 5287933 5288228 -80407526 - L1MA5 LINE L1 0 6300 6005 1600 180 35 38 chr15 5289358 5289724 -80406030 - MLT1A1 LTR MaLR 0 365 1 479 313 82 5 chr15 5290007 5290215 -80405539 - MER58A DNA MER1_type 0 224 1 1743 174 0 7 chr15 5290240 5290538 -80405216 + AluJb SINE Alu 1 296 -16 525 267 0 0 chr15 5291332 5291592 -80404162 + (TG)n Simple_repeat Simple_repeat 1 260 0 1512 223 56 11 chr15 5291762 5292201 -80403553 + MER89 LTR ERV1 1 559 0 375 287 65 57 chr15 5292611 5292841 -80402913 + MIR SINE MIR 31 262 0 3646 214 66 7 chr15 5293493 5294324 -80401430 - L1MC3 LINE L1 -511 7274 6395 312 202 34 56 chr15 5295921 5296010 -80399744 - L1MCa LINE L1 -4336 2090 2004 480 275 8 23 chr15 5296025 5296156 -80399598 - L2 LINE L2 0 3272 3144 27 29 0 0 chr15 5297313 5297347 -80398407 + AT_rich Low_complexity Low_complexity 1 34 0 213 261 0 0 chr15 5297583 5297629 -80398125 + (TA)n Simple_repeat Simple_repeat 1 46 0 404 163 29 0 chr15 5297629 5297709 -80398045 + MLT2D LTR ERVL 301 480 -40 198 236 0 0 chr15 5297726 5297781 -80397973 + (TA)n Simple_repeat Simple_repeat 2 56 0 1944 162 29 21 chr15 5297801 5298141 -80397613 - MLT2D LTR ERVL -41 373 31 1009 66 22 0 chr15 5299625 5299762 -80395992 - L1MA8 LINE L1 -25 6266 6127 379 127 89 0 chr15 5299763 5299842 -80395912 - L1 LINE L1 -861 5285 5200 1869 152 108 8 chr15 5299845 5300214 -80395540 - L1MA8 LINE L1 -165 6126 5721 3404 97 19 13 chr15 5300214 5300705 -80395049 + LTR15 LTR ERV1 1 595 0 3077 133 19 35 chr15 5300705 5300929 -80394825 - L1MA8 LINE L1 -567 5724 5498 3772 131 38 0 chr15 5300929 5301488 -80394266 + LTR19B LTR ERV1 1 580 0 3077 133 19 35 chr15 5301488 5302215 -80393539 - L1MA8 LINE L1 -793 5498 4790 333 0 0 0 chr15 5302215 5302252 -80393502 + (TG)n Simple_repeat Simple_repeat 2 38 0 894 192 12 6 chr15 5302254 5302426 -80393328 - AluJb SINE Alu -23 289 117 1735 142 14 0 chr15 5302426 5302714 -80393040 - L1MA8 LINE L1 -1367 4779 4488 306 0 0 0 chr15 5303361 5303395 -80392359 + (TG)n Simple_repeat Simple_repeat 2 35 0 218 211 0 0 chr15 5304641 5304679 -80391075 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 305 301 94 8 chr15 5304679 5304797 -80390957 + L1MC4 LINE L1 6589 6703 -1339 * 308 255 128 11 chr15 5304752 5304846 -80390908 - L1MC4 LINE L1 -1337 6705 6601 322 292 45 11 chr15 5305085 5305174 -80390580 + L1MC4 LINE L1 6611 6702 -1340 * 325 267 35 12 chr15 5305149 5305235 -80390519 - L1MC4 LINE L1 -1341 6701 6614 192 152 0 0 chr15 5306028 5306061 -80389693 + T-rich Low_complexity Low_complexity 3 35 0 303 268 117 57 chr15 5306934 5307199 -80388555 - L1M4 LINE L1 -1073 5073 4793 4134 152 197 20 chr15 5307203 5308493 -80387261 + pTR5 LTR ERV1 741 2437 -1 3725 179 37 13 chr15 5308576 5309334 -80386420 - L1MA7 LINE L1 0 6291 5516 5722 168 19 4 chr15 5309335 5310392 -80385362 + L1 LINE L1 3646 4718 -1428 517 297 28 31 chr15 5310393 5310679 -80385075 - L1M4 LINE L1 -1440 4706 4422 596 285 16 36 chr15 5311144 5311337 -80384417 - MIR SINE MIR -30 232 44 1288 159 40 36 chr15 5312184 5312236 -80383518 - L1MA5 LINE L1 -2 6298 6248 1949 107 3 58 chr15 5312236 5312545 -80383209 - AluSx SINE Alu -20 292 1 1288 159 40 36 chr15 5312545 5312768 -80382986 - L1MA5 LINE L1 -52 6248 6022 22 80 0 0 chr15 5312963 5313013 -80382741 + AT_rich Low_complexity Low_complexity 1 50 0 3945 144 29 47 chr15 5313021 5313505 -80382249 - L1MB3 LINE L1 -2 6181 5715 3625 135 23 30 chr15 5313505 5314112 -80381642 + LTR26 LTR ERV1 1 603 0 3945 144 29 47 chr15 5314112 5314395 -80381359 - L1MB3 LINE L1 -468 5715 5428 1155 201 17 8 chr15 5314681 5314920 -80380834 + MER4E LTR ERV1 539 779 0 1112 211 164 40 chr15 5315862 5316450 -80379304 + LTR48 LTR ERV1 1 644 0 366 307 15 0 chr15 5317659 5317796 -80377958 - L1MA10 LINE L1 -20 6314 6176 241 215 177 0 chr15 5317831 5317910 -80377844 - L1ME2 LINE L1 -228 5936 5844 198 192 0 0 chr15 5317910 5317962 -80377792 + (TA)n Simple_repeat Simple_repeat 1 52 0 201 147 0 0 chr15 5317983 5318017 -80377737 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 200 89 67 0 chr15 5318062 5318107 -80377647 + (TA)n Simple_repeat Simple_repeat 2 49 0 341 219 78 23 chr15 5318198 5318326 -80377428 - L1ME2 LINE L1 -364 5802 5668 245 123 15 77 chr15 5318329 5318394 -80377360 + MSTC LTR MaLR 6 66 -362 837 238 42 26 chr15 5318539 5318804 -80376950 + MSTC LTR MaLR 157 425 -3 335 196 145 58 chr15 5318808 5318946 -80376808 - L1ME2 LINE L1 -491 5675 5526 885 224 40 40 chr15 5318996 5319299 -80376455 + MLT1B LTR MaLR 1 303 -87 264 113 0 48 chr15 5319454 5319516 -80376238 + (CAATA)n Simple_repeat Simple_repeat 1 59 0 662 229 4 32 chr15 5320827 5321080 -80374674 + L1M4 LINE L1 2925 3170 -2976 1928 138 31 7 chr15 5322862 5323151 -80372603 + AluSx SINE Alu 1 296 -16 2481 88 0 0 chr15 5323790 5324098 -80371656 - AluSc SINE Alu -1 308 1 25 31 0 0 chr15 5327122 5327154 -80368600 + AT_rich Low_complexity Low_complexity 1 32 0 22574 171 29 16 chr15 5327636 5332788 -80362966 - L1P3 LINE L1 -743 5718 430 1749 239 35 26 chr15 5332814 5333368 -80362386 - L1P3 LINE L1 -5330 545 2 348 225 117 0 chr15 5333624 5333735 -80362019 - L1MC4 LINE L1 0 8042 7919 2266 107 7 0 chr15 5333803 5334103 -80361651 - AluSx SINE Alu -10 302 1 236 294 0 0 chr15 5334203 5334295 -80361459 - Charlie2a DNA MER1_type -1370 1492 1401 24 32 0 0 chr15 5335221 5335252 -80360502 + AT_rich Low_complexity Low_complexity 1 31 0 231 236 14 28 chr15 5335347 5335419 -80360335 + CT-rich Low_complexity Low_complexity 4 74 0 2097 138 0 0 chr15 5336140 5336436 -80359318 - AluSq SINE Alu -17 296 1 22 35 0 0 chr15 5336632 5336661 -80359093 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr15 5336680 5336713 -80359041 + AT_rich Low_complexity Low_complexity 1 33 0 697 286 53 11 chr15 5337081 5337363 -80358391 + L1P3 LINE L1 5561 5853 -319 1217 146 59 14 chr15 5338003 5338223 -80357531 + MER30 DNA MER1_type 1 230 0 1978 146 7 7 chr15 5338744 5339046 -80356708 + AluSx SINE Alu 1 302 -10 713 251 79 20 chr15 5339211 5339554 -80356200 + Charlie2a DNA MER1_type 911 1273 -1589 722 319 83 27 chr15 5339686 5340093 -80355661 - L2 LINE L2 -20 3293 2864 294 333 72 31 chr15 5340129 5340447 -80355307 - L2 LINE L2 -586 2728 2398 182 264 57 0 chr15 5341080 5341133 -80354621 - L2 LINE L2 -2 3311 3256 2314 74 0 0 chr15 5341266 5341580 -80354174 - AluY SINE Alu 0 314 1 983 106 0 0 chr15 5341585 5341717 -80354037 - AluY SINE Alu -179 132 1 232 192 48 67 chr15 5341747 5341851 -80353903 + MLT1I LTR MaLR 249 350 -59 1035 252 91 23 chr15 5341935 5341993 -80353761 - MLT2F LTR ERVL -9 654 601 300 27 0 0 chr15 5341993 5342030 -80353724 + (TC)n Simple_repeat Simple_repeat 2 38 0 * 414 0 0 0 chr15 5342029 5342075 -80353679 + (TG)n Simple_repeat Simple_repeat 1 46 0 1035 252 91 23 chr15 5342030 5342151 -80353603 - MLT2F LTR ERVL -62 601 490 189 0 0 0 chr15 5342151 5342172 -80353582 + (CAGG)n Simple_repeat Simple_repeat 3 23 0 1035 252 91 23 chr15 5342172 5342476 -80353278 - MLT2F LTR ERVL -173 490 185 1732 255 47 72 chr15 5342571 5344283 -80351471 - L1MEc LINE L1 -3164 3051 1437 368 128 21 32 chr15 5344284 5344378 -80351376 + CT-rich Low_complexity Low_complexity 3 95 0 351 265 61 39 chr15 5344453 5344683 -80351071 - L1MEc LINE L1 -5037 1181 947 345 291 52 70 chr15 5344690 5344920 -80350834 - L1MEc LINE L1 -5510 886 661 349 347 52 38 chr15 5345596 5346074 -80349680 - L1M4 LINE L1 -3174 2972 2488 343 340 44 6 chr15 5346466 5346625 -80349129 - MER20B DNA MER1_type -612 171 7 343 221 54 69 chr15 5346756 5346960 -80348794 - HAL1b LINE L1 -468 880 680 421 288 144 55 chr15 5347266 5347729 -80348025 - HAL1b LINE L1 -824 524 65 325 246 155 16 chr15 5347734 5347921 -80347833 - MER58C DNA MER1_type -2 213 1 1260 152 13 0 chr15 5350686 5350917 -80344837 - L1MA4A LINE L1 -5 6298 6065 249 337 32 11 chr15 5351460 5351555 -80344199 + L2 LINE L2 3197 3293 -20 22 35 0 0 chr15 5352783 5352812 -80342942 + AT_rich Low_complexity Low_complexity 1 29 0 8300 229 56 27 chr15 5353076 5353424 -80342330 - L1MC3 LINE L1 -7 8058 7722 2425 62 3 0 chr15 5353424 5353714 -80342040 - AluY SINE Alu -16 295 5 8300 229 56 27 chr15 5353714 5355715 -80340039 - L1MC3 LINE L1 -343 7722 5565 2007 131 17 14 chr15 5355715 5356012 -80339742 - AluSx SINE Alu -14 298 1 8300 229 56 27 chr15 5356012 5356940 -80338814 - L1MC3 LINE L1 -2500 5565 4666 3714 254 76 37 chr15 5356965 5358003 -80337751 - L1MC3 LINE L1 -2084 4342 3346 2190 124 0 0 chr15 5358003 5358293 -80337461 + AluSp SINE Alu 1 290 -23 810 124 84 22 chr15 5358293 5358471 -80337283 - L1MA5A LINE L1 -9 6288 6100 3714 254 76 37 chr15 5358471 5359361 -80336393 - L1MC3 LINE L1 -3079 3347 2335 34 0 0 0 chr15 5359405 5359439 -80336315 + AT_rich Low_complexity Low_complexity 1 34 0 478 305 97 55 chr15 5359457 5359696 -80336058 - L1 LINE L1 -3177 3249 3021 934 245 84 25 chr15 5359696 5360018 -80335736 + MER58B DNA MER1_type 1 341 0 478 305 97 55 chr15 5360018 5360336 -80335418 - L1 LINE L1 -3405 3021 2647 288 53 0 0 chr15 5360336 5360374 -80335380 + (TG)n Simple_repeat Simple_repeat 1 38 0 478 305 97 55 chr15 5360374 5360487 -80335267 - L1 LINE L1 -3779 2647 2540 228 238 0 0 chr15 5360487 5360550 -80335204 - L1MC4 LINE L1 0 8042 7980 23 33 0 0 chr15 5360805 5360835 -80334919 + AT_rich Low_complexity Low_complexity 1 30 0 2576 57 0 13 chr15 5361509 5361824 -80333930 - AluY SINE Alu 0 311 1 219 329 29 0 chr15 5362082 5362152 -80333602 + MIR3 SINE MIR 85 156 -52 515 261 30 0 chr15 5362613 5362747 -80333007 + MER21B LTR ERV1 304 441 -422 2316 147 9 104 chr15 5362813 5363343 -80332411 + LTR12 LTR ERV1 1 480 -234 225 57 0 29 chr15 5363808 5363843 -80331911 + (TTTTA)n Simple_repeat Simple_repeat 5 160 0 787 234 0 25 chr15 5363843 5364002 -80331752 - FRAM SINE Alu -25 151 1 1520 129 47 0 chr15 5364319 5364551 -80331203 - L1MA5A LINE L1 -11 6286 6044 30 0 0 0 chr15 5364558 5364588 -80331166 + AT_rich Low_complexity Low_complexity 1 30 0 2400 77 0 19 chr15 5364715 5365039 -80330715 + AluYb8 SINE Alu 1 318 0 3699 80 4 0 chr15 5365627 5366077 -80329677 + MLT2A2 LTR ERVL 1 452 -1 776 257 48 0 chr15 5366129 5366335 -80329419 - MER20 DNA MER1_type -1 218 3 1661 234 131 30 chr15 5367160 5367377 -80328377 + L1MDa LINE L1 21 215 -6325 288 0 0 0 chr15 5367377 5367409 -80328345 + (CA)n Simple_repeat Simple_repeat 2 33 0 1661 234 131 30 chr15 5367409 5367755 -80327999 + L1MDa LINE L1 215 641 -5899 * 1787 216 67 17 chr15 5367753 5368229 -80327525 - L1MDa LINE L1 -5000 1540 1041 2773 160 36 5 chr15 5368578 5369021 -80326733 - MSTB2 LTR MaLR 0 457 1 378 0 0 0 chr15 5369109 5369151 -80326603 + (CA)n Simple_repeat Simple_repeat 1 42 0 316 273 47 35 chr15 5369777 5369949 -80325805 - L1M4 LINE L1 -1437 4709 4536 22 0 0 0 chr15 5371548 5371570 -80324184 + AT_rich Low_complexity Low_complexity 1 22 0 637 233 8 0 chr15 5371570 5371699 -80324055 - MLT1C LTR MaLR -46 421 292 2543 174 44 25 chr15 5371718 5372241 -80323513 - L1MA6 LINE L1 -1 6299 5767 2294 194 29 12 chr15 5373453 5373943 -80321811 + LTR53 LTR ERVL 20 517 -2 1875 199 14 6 chr15 5374230 5374586 -80321168 + MLT1A1 LTR MaLR 7 365 0 394 252 25 23 chr15 5375215 5375392 -80320362 + HERVL74 LTR ERVL 982 1230 -2407 762 191 0 31 chr15 5375392 5375554 -80320200 - L1MC/D LINE L1 -630 5612 5456 1912 255 75 54 chr15 5377260 5377340 -80318414 + MER21B LTR ERV1 19 96 -767 2375 88 3 10 chr15 5377340 5377648 -80318106 - AluSp SINE Alu -7 306 1 1912 255 75 54 chr15 5377648 5378305 -80317449 + MER21B LTR ERV1 96 771 -92 412 284 153 6 chr15 5379926 5380102 -80315652 + MLT1J2 LTR MaLR 3 204 -246 882 291 96 34 chr15 5380146 5380593 -80315161 + LTR33 LTR ERVL 47 521 0 346 203 11 22 chr15 5381871 5382053 -80313701 + (TG)n Simple_repeat Simple_repeat 1 180 0 409 207 6 11 chr15 5382101 5382280 -80313474 + (TG)n Simple_repeat Simple_repeat 2 179 0 404 325 24 8 chr15 5383689 5383812 -80311942 - L2 LINE L2 -11 3261 3137 661 309 133 46 chr15 5384054 5384550 -80311204 + L2 LINE L2 159 697 -2617 1238 276 165 12 chr15 5384583 5385221 -80310533 + L1M4 LINE L1 2296 3030 -3116 1911 275 72 31 chr15 5385237 5385981 -80309773 + L1M4 LINE L1 3158 3870 -2276 2173 112 0 17 chr15 5385981 5386276 -80309478 + AluSx SINE Alu 1 290 -22 1911 275 72 31 chr15 5386276 5386558 -80309196 + L1M4 LINE L1 3870 4229 -1917 1914 157 47 18 chr15 5386558 5386940 -80308814 - L1MB4 LINE L1 -7 6173 5781 4405 200 50 22 chr15 5387125 5388570 -80307184 - L1MB4 LINE L1 -419 5761 4277 220 333 12 0 chr15 5388583 5388664 -80307090 + MIR3 SINE MIR 126 207 -1 234 0 0 0 chr15 5389748 5389774 -80305980 + (TG)n Simple_repeat Simple_repeat 2 27 0 2490 171 107 13 chr15 5390907 5391333 -80304421 + MLT2B2 LTR ERVL 1 476 -39 917 173 11 148 chr15 5391333 5391610 -80304144 - MER8 DNA MER2_type 0 239 1 2490 171 107 13 chr15 5391610 5391650 -80304104 + MLT2B2 LTR ERVL 476 511 -4 5720 148 18 10 chr15 5393195 5394211 -80301543 - L1 LINE L1 -1293 4853 3830 1811 131 6 51 chr15 5394473 5394814 -80300940 + AluSq SINE Alu 1 313 0 1589 189 150 14 chr15 5396278 5396712 -80299042 - LTR54B LTR ERV1 -1 497 5 197 272 39 48 chr15 5397281 5397384 -80298370 - L2 LINE L2 -217 3096 2995 188 382 22 0 chr15 5397782 5397871 -80297883 + MIR SINE MIR 93 183 -79 2540 228 48 159 chr15 5398754 5399832 -80295922 + L1ME2 LINE L1 2333 3529 -2617 326 175 0 0 chr15 5399832 5399895 -80295859 + Alu SINE Alu 240 302 0 2540 228 48 159 chr15 5399895 5400247 -80295507 + L1ME2 LINE L1 3529 3505 -2641 1619 201 7 0 chr15 5400247 5400544 -80295210 + AluJb SINE Alu 1 302 -10 189 0 0 0 chr15 5400544 5400565 -80295189 + (CA)n Simple_repeat Simple_repeat 2 22 0 2540 228 48 159 chr15 5400575 5401286 -80294468 + L1ME2 LINE L1 3504 4292 -1854 1118 119 0 0 chr15 5401324 5401483 -80294271 + AluSg/x SINE Alu 154 312 0 2443 241 107 20 chr15 5401502 5402855 -80292899 + L1ME2 LINE L1 4407 6126 -38 261 289 59 40 chr15 5402753 5402905 -80292849 + L1MA10 LINE L1 6180 6334 0 * 1443 260 37 12 chr15 5403700 5404188 -80291566 - L1M4 LINE L1 -973 5173 4674 2337 68 65 0 chr15 5404191 5404484 -80291270 + L1PB1 LINE L1 5834 6145 -6 447 322 0 0 chr15 5404507 5404653 -80291101 - L1MEc LINE L1 -3629 2586 2441 2032 142 3 0 chr15 5404688 5404991 -80290763 + AluSx SINE Alu 1 304 -8 228 231 77 33 chr15 5404991 5405073 -80290681 + LTR38 LTR ERV1 468 556 0 659 270 44 0 chr15 5405074 5405278 -80290476 - L1MEc LINE L1 -3772 2443 2231 860 247 49 63 chr15 5405289 5405539 -80290215 - L1MEc LINE L1 -6034 362 110 207 0 0 0 chr15 5405539 5405562 -80290192 + (TC)n Simple_repeat Simple_repeat 2 24 0 2156 96 21 0 chr15 5405562 5405844 -80289910 - AluSp SINE Alu -22 291 4 860 247 49 63 chr15 5405844 5405940 -80289814 - L1MEc LINE L1 -6284 112 20 611 220 113 0 chr15 5406432 5406600 -80289154 + MER20 DNA MER1_type 33 219 0 280 257 88 9 chr15 5409555 5409668 -80286086 + L1M4 LINE L1 3659 3780 -2366 21 36 0 0 chr15 5410495 5410523 -80285231 + AT_rich Low_complexity Low_complexity 1 28 0 417 285 89 49 chr15 5410576 5411102 -80284652 + L1ME1 LINE L1 1336 1882 -4839 * 2878 233 49 19 chr15 5411101 5411388 -80284366 + L1ME1 LINE L1 5298 5575 -985 1455 193 68 17 chr15 5411388 5411683 -80284071 + AluJo SINE Alu 1 310 -2 2878 233 49 19 chr15 5411683 5412427 -80283327 + L1ME1 LINE L1 5575 6362 -198 2358 271 63 14 chr15 5412426 5413425 -80282329 + L1MEc LINE L1 1757 2848 -3873 * 1699 256 64 26 chr15 5413437 5414079 -80281675 + L1MEc LINE L1 4035 4700 -1840 440 323 32 14 chr15 5414153 5414373 -80281381 + L1MEc LINE L1 3866 4089 -2451 924 276 104 3 chr15 5414490 5414874 -80280880 + L1MEc LINE L1 4668 5090 -1450 1788 181 0 0 chr15 5415041 5415379 -80280375 + AluJb SINE Alu 1 338 0 295 322 40 40 chr15 5415470 5415672 -80280082 + MLT1J LTR MaLR 308 509 -2 345 288 58 14 chr15 5415798 5415937 -80279817 + MIR SINE MIR 77 221 -41 2996 177 16 19 chr15 5416065 5416629 -80279125 + L1PA16 LINE L1 5586 6147 -19 220 320 13 0 chr15 5418536 5418611 -80277143 - L2 LINE L2 -2 3270 3195 2232 177 77 7 chr15 5418850 5419291 -80276463 - L1MB2 LINE L1 -7 6164 5693 2852 126 24 9 chr15 5419689 5420110 -80275644 - MSTA LTR MaLR 0 428 2 1176 222 61 80 chr15 5420200 5420793 -80274961 - MER67B LTR ERV1 -164 403 1 262 268 0 0 chr15 5420867 5420923 -80274831 + (TG)n Simple_repeat Simple_repeat 2 57 0 1651 187 0 17 chr15 5421521 5421821 -80273933 - AluJo SINE Alu -15 297 3 205 200 147 40 chr15 5423317 5423392 -80272362 - MER5A DNA MER1_type -89 100 18 278 226 189 79 chr15 5423496 5423686 -80272068 + MLT1J2 LTR MaLR 22 232 -218 281 182 159 23 chr15 5423749 5423837 -80271917 + MLT1J2 LTR MaLR 351 450 0 208 279 0 0 chr15 5424052 5424095 -80271659 + MER5A DNA MER1_type 63 105 -84 2210 101 0 19 chr15 5424361 5424668 -80271086 - AluSg SINE Alu -1 309 9 505 184 112 10 chr15 5424941 5425039 -80270715 + FLAM_C SINE Alu 2 109 -34 275 168 8 107 chr15 5425406 5425537 -80270217 + FRAM SINE Alu 23 140 -26 1920 61 32 4 chr15 5425540 5425787 -80269967 - AluY SINE Alu -14 297 44 872 281 35 24 chr15 5425811 5426099 -80269655 + MER93a LTR ERV1 112 402 0 2416 47 4 0 chr15 5427233 5427512 -80268242 - L1PA5 LINE L1 0 6154 5875 2618 61 0 0 chr15 5428437 5428748 -80267006 + AluY SINE Alu 1 311 0 304 374 107 0 chr15 5428893 5429080 -80266674 + MIR SINE MIR 32 238 -24 2448 78 0 0 chr15 5429458 5429767 -80265987 + AluSg1 SINE Alu 1 309 0 209 105 0 26 chr15 5431300 5431338 -80264416 + (TCTCCC)n Simple_repeat Simple_repeat 6 42 0 2318 78 0 14 chr15 5434192 5434540 -80261214 + AluSq SINE Alu 1 313 0 195 42 0 0 chr15 5435185 5435209 -80260545 + (T)n Simple_repeat Simple_repeat 1 24 0 22 56 0 0 chr15 5438136 5438172 -80257582 + AT_rich Low_complexity Low_complexity 1 36 0 2156 93 0 84 chr15 5438172 5438505 -80257249 + AluSx SINE Alu 1 305 -7 201 74 0 0 chr15 5439249 5439276 -80256478 + (TG)n Simple_repeat Simple_repeat 2 28 0 739 75 0 98 chr15 5439905 5440038 -80255716 - LTR9B LTR ERV1 -84 560 441 283 224 0 71 chr15 5440071 5440156 -80255598 - L1P5 LINE L1 -708 5443 5365 216 233 33 17 chr15 5442108 5442168 -80253586 - MIR SINE MIR -120 142 82 22 0 0 0 chr15 5442429 5442451 -80253303 + AT_rich Low_complexity Low_complexity 1 22 0 279 220 258 68 chr15 5443112 5443244 -80252510 + MIR SINE MIR 88 244 -18 35 24 0 0 chr15 5443470 5443512 -80252242 + AT_rich Low_complexity Low_complexity 1 42 0 225 343 55 27 chr15 5445434 5445580 -80250174 + L2 LINE L2 3123 3272 0 1073 99 53 0 chr15 5446370 5446522 -80249232 - L1PA10 LINE L1 0 6168 6009 668 38 13 6 chr15 5446524 5446613 -80249141 + L1PA8A LINE L1 5796 5874 -257 236 271 86 14 chr15 5446919 5446989 -80248765 - L1M2a LINE L1 -6747 421 347 764 207 79 35 chr15 5447127 5447330 -80248424 - L1MD2 LINE L1 -459 5969 5758 5305 196 95 33 chr15 5447349 5448878 -80246876 - L1MDa LINE L1 -3892 2648 1025 27 49 0 0 chr15 5448932 5448973 -80246781 + AT_rich Low_complexity Low_complexity 1 41 0 355 283 101 0 chr15 5449162 5449300 -80246454 - L1MD2 LINE L1 -1050 5165 5014 425 250 74 28 chr15 5449457 5449633 -80246121 - L1MD2 LINE L1 -3584 2631 2448 1147 286 89 42 chr15 5449864 5450864 -80244890 - L1MD2 LINE L1 -4544 1852 806 25 0 0 0 chr15 5452805 5452830 -80242924 + AT_rich Low_complexity Low_complexity 1 25 0 199 280 192 0 chr15 5453214 5453339 -80242415 + L2 LINE L2 2334 2482 -832 229 303 86 63 chr15 5453580 5453801 -80241953 + L2 LINE L2 2849 3074 -198 21 0 0 0 chr15 5453900 5453921 -80241833 + AT_rich Low_complexity Low_complexity 1 21 0 2068 115 3 60 chr15 5453953 5454267 -80241487 - AluSp SINE Alu -17 296 1 2109 104 3 32 chr15 5456750 5457058 -80238696 + AluSq SINE Alu 1 299 -14 257 331 40 24 chr15 5457068 5457192 -80238562 - L1M4 LINE L1 -970 5176 5051 1034 230 72 23 chr15 5457409 5457937 -80237817 + MLT1E LTR MaLR 1 593 0 258 231 68 26 chr15 5457965 5458082 -80237672 - L1M4 LINE L1 -1434 4712 4591 404 332 135 9 chr15 5458337 5458566 -80237188 - HAL1b LINE L1 -994 354 97 2431 66 0 10 chr15 5458673 5458977 -80236777 - AluY SINE Alu -10 301 1 906 300 142 51 chr15 5459407 5460546 -80235208 + L2 LINE L2 2071 3307 -6 917 242 106 124 chr15 5461840 5462683 -80233071 + L1MCb LINE L1 570 1400 -4851 1880 73 4 0 chr15 5662685 5662930 -80032824 - AluSc SINE Alu -63 246 1 32 26 0 0 chr15 5662940 5662979 -80032775 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr15 5663139 5663160 -80032594 + AT_rich Low_complexity Low_complexity 1 21 0 669 214 30 40 chr15 5663161 5663362 -80032392 + L1MC5 LINE L1 6977 7175 -786 402 299 47 16 chr15 5663372 5663499 -80032255 + MER5B DNA MER1_type 48 178 0 270 304 54 20 chr15 5663590 5663738 -80032016 + L2 LINE L2 2942 3094 -178 530 271 47 10 chr15 5663829 5664021 -80031733 - L1ME1 LINE L1 -114 5986 5788 2268 86 7 0 chr15 5664161 5664462 -80031292 + AluSp SINE Alu 1 303 -10 1419 258 106 23 chr15 5664689 5665237 -80030517 - L1ME1 LINE L1 -298 5806 5165 2241 74 3 3 chr15 5665237 5665535 -80030219 - AluY SINE Alu -13 298 1 1419 258 106 23 chr15 5665535 5665722 -80030032 - L1ME1 LINE L1 -939 5165 4995 882 262 54 81 chr15 5665749 5665820 -80029934 - L1ME1 LINE L1 -3107 2973 2902 2653 146 50 7 chr15 5665820 5666280 -80029474 - L1MB2 LINE L1 -2 6169 5690 882 262 54 81 chr15 5666280 5666953 -80028801 - L1ME1 LINE L1 -3178 2902 2249 3131 185 189 6 chr15 5666955 5667678 -80028076 - L1MC3 LINE L1 -12 7773 6918 291 310 49 28 chr15 5667964 5668106 -80027648 - L1ME1 LINE L1 -5924 146 2 2280 74 0 10 chr15 5668247 5668556 -80027198 - AluY SINE Alu -5 306 1 714 330 113 45 chr15 5669006 5669425 -80026329 - L3 LINE CR1 -861 716 258 655 201 141 5 chr15 5669425 5669609 -80026145 - MER3 DNA MER1_type 0 209 1 714 330 113 45 chr15 5669609 5669674 -80026080 - L3 LINE CR1 -1319 258 199 1036 126 12 18 chr15 5669679 5669846 -80025908 - FRAM SINE Alu -9 167 2 2101 92 0 0 chr15 5670953 5671264 -80024490 + AluSc SINE Alu 1 311 0 250 268 18 36 chr15 5671759 5671871 -80023883 + CT-rich Low_complexity Low_complexity 3 112 0 532 262 55 75 chr15 5672206 5672363 -80023391 - HAL1 LINE L1 -1192 1315 1156 1710 110 110 11 chr15 5672363 5672644 -80023110 - AluSg SINE Alu 0 310 2 532 262 55 75 chr15 5672644 5673035 -80022719 - HAL1 LINE L1 -1351 1156 778 204 319 43 11 chr15 5673035 5673129 -80022625 + MER5B DNA MER1_type 23 119 -59 186 200 29 0 chr15 5673190 5673225 -80022529 - MER5B DNA MER1_type -134 44 9 432 225 7 63 chr15 5674642 5674784 -80020970 - L1MC4a LINE L1 -1973 5835 5702 250 326 7 0 chr15 5674976 5675114 -80020640 - L1P LINE L1 -726 5425 5287 24 0 0 0 chr15 5675466 5675490 -80020264 + AT_rich Low_complexity Low_complexity 1 24 0 2197 99 0 10 chr15 5675497 5675801 -80019953 + AluSq SINE Alu 1 301 -12 1975 71 4 0 chr15 5676219 5676471 -80019283 + AluSx SINE Alu 1 253 -59 4173 199 32 14 chr15 5676471 5677341 -80018413 - L1MA10 LINE L1 -39 6295 5410 21 71 0 0 chr15 5677762 5677804 -80017950 + AT_rich Low_complexity Low_complexity 1 42 0 623 312 28 43 chr15 5677812 5678376 -80017378 - L1M4 LINE L1 -1662 4484 3929 2182 116 3 0 chr15 5678391 5678702 -80017052 - AluSx SINE Alu 0 312 1 288 303 56 40 chr15 5678785 5678834 -80016920 - L1MC4 LINE L1 -99 7943 7896 2231 114 0 9 chr15 5678834 5679149 -80016605 - AluSx SINE Alu 0 312 1 288 303 56 40 chr15 5679149 5679350 -80016404 - L1MC4 LINE L1 -146 7896 7689 330 244 26 43 chr15 5679971 5680086 -80015668 - L1MC4a LINE L1 -391 7417 7305 2562 171 17 11 chr15 5680260 5680733 -80015021 - L1MB3 LINE L1 -233 5950 5475 579 304 84 4 chr15 5680792 5681019 -80014735 - MER119 DNA MER1_type -338 245 1 2127 62 0 117 chr15 5681425 5681777 -80013977 + AluY SINE Alu 1 311 0 666 294 21 0 chr15 5681835 5682029 -80013725 + L1MC5 LINE L1 6635 6832 -1129 727 213 40 109 chr15 5682075 5682404 -80013350 + L1MC5 LINE L1 6820 7125 -836 301 273 48 95 chr15 5682534 5682765 -80012989 + L1MC5 LINE L1 7308 7527 -434 2235 56 0 11 chr15 5682937 5683253 -80012501 - AluY SINE Alu 0 313 1 252 270 90 0 chr15 5684469 5684558 -80011196 - MLT1I LTR MaLR -243 166 70 2002 84 22 0 chr15 5686716 5686989 -80008765 - AluSx SINE Alu -14 298 20 2318 184 29 63 chr15 5687348 5687764 -80007990 + MLT1D LTR MaLR 1 397 -108 1783 168 3 3 chr15 5687764 5688073 -80007681 - AluJo SINE Alu -3 309 1 2318 184 29 63 chr15 5688073 5688179 -80007575 + MLT1D LTR MaLR 397 505 0 224 146 24 0 chr15 5690038 5690079 -80005675 + L2 LINE L2 3225 3266 -6 1920 137 0 0 chr15 5690671 5690963 -80004791 - AluJb SINE Alu -20 292 1 5217 201 36 16 chr15 5690976 5691541 -80004213 - L1MC3 LINE L1 -8 7777 7225 2344 85 3 0 chr15 5691541 5691847 -80003907 + AluY SINE Alu 1 307 -4 5217 201 36 16 chr15 5691847 5692196 -80003558 - L1MC3 LINE L1 -560 7225 6833 1928 174 21 6 chr15 5692196 5692535 -80003219 - MER2 DNA MER2_type 0 344 1 5217 201 36 16 chr15 5692535 5692767 -80002987 - L1MC3 LINE L1 -952 6833 6607 2158 113 7 0 chr15 5692774 5693075 -80002679 - AluSc SINE Alu -6 303 1 1183 133 6 0 chr15 5693075 5693256 -80002498 - AluSg/x SINE Alu -4 306 125 1292 202 0 8 chr15 5693476 5693733 -80002021 + AluJo SINE Alu 36 290 -22 261 335 112 22 chr15 5693977 5694156 -80001598 - MIR SINE MIR -48 214 20 1802 282 143 44 chr15 5694346 5695574 -80000180 + L2 LINE L2 1438 2786 -528 285 286 98 0 chr15 5695866 5695978 -79999776 + MER96 DNA MER1_type? 48 170 -5 320 299 9 9 chr15 5696332 5696439 -79999315 + MER112 DNA MER1_type 36 142 -118 312 328 24 16 chr15 5696530 5696655 -79999099 - MIR SINE MIR -62 146 21 280 233 33 22 chr15 5697109 5697199 -79998555 + MER5A DNA MER1_type 19 109 -80 24 32 0 0 chr15 5697717 5697748 -79998006 + AT_rich Low_complexity Low_complexity 1 31 0 3659 180 28 31 chr15 5697748 5698254 -79997500 - L1MB3 LINE L1 -7 6176 5673 2426 57 0 22 chr15 5698254 5698572 -79997182 - AluY SINE Alu 0 311 1 3659 180 28 31 chr15 5698572 5698865 -79996889 - L1MB3 LINE L1 -510 5673 5380 628 308 138 21 chr15 5699270 5699595 -79996159 + MLT1I LTR MaLR 47 409 0 2046 124 0 0 chr15 5700174 5700473 -79995281 - AluSc SINE Alu -2 307 9 2125 177 19 0 chr15 5700498 5700870 -79994884 + MLT1B LTR MaLR 12 390 0 185 218 109 18 chr15 5700951 5701006 -79994748 - L2 LINE L2 -62 3251 3192 1849 147 0 16 chr15 5701056 5701363 -79994391 + AluJb SINE Alu 1 302 -10 1754 164 3 10 chr15 5701373 5701671 -79994083 + AluJo SINE Alu 1 296 -16 255 271 27 59 chr15 5702492 5702620 -79993134 - MIR SINE MIR -37 171 48 635 254 11 16 chr15 5702787 5702972 -79992782 - L1MD2 LINE L1 -14 6739 6556 189 107 0 0 chr15 5702972 5703000 -79992754 + (TATG)n Simple_repeat Simple_repeat 4 31 0 513 243 95 7 chr15 5703002 5703150 -79992604 - L1MD2 LINE L1 -229 6524 6364 * 3445 210 28 38 chr15 5703142 5703576 -79992178 - L1MD2 LINE L1 -598 6155 5718 2335 80 0 0 chr15 5703576 5703875 -79991879 - AluSq SINE Alu -14 299 1 3445 210 28 38 chr15 5703875 5704929 -79990825 - L1MD2 LINE L1 -1035 5718 4674 2866 234 69 4 chr15 5704925 5705985 -79989769 - L1MD2 LINE L1 -3134 3406 2284 * 692 211 256 4 chr15 5705989 5706259 -79989495 - L1MD2 LINE L1 -4292 2248 1911 632 128 8 26 chr15 5706260 5706377 -79989377 - L1MB8 LINE L1 0 6178 6064 2391 78 0 0 chr15 5706518 5706825 -79988929 - AluY SINE Alu -4 307 1 22 35 0 0 chr15 5706831 5706860 -79988894 + AT_rich Low_complexity Low_complexity 1 29 0 3102 163 32 17 chr15 5706861 5707461 -79988293 - L1MB3 LINE L1 -2 6181 5573 229 303 46 0 chr15 5707504 5707613 -79988141 - L1MC5 LINE L1 -516 7445 7332 1048 217 14 0 chr15 5707720 5707932 -79987822 + MLT1B LTR MaLR 1 215 -175 653 213 0 0 chr15 5708076 5708198 -79987556 + FLAM_C SINE Alu 1 122 -11 942 9 0 0 chr15 5708216 5708323 -79987431 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 1990 103 14 0 chr15 5708325 5708615 -79987139 - AluSx SINE Alu -18 294 1 221 271 17 17 chr15 5709406 5709524 -79986230 + (TATAA)n Simple_repeat Simple_repeat 3 120 0 846 140 0 22 chr15 5709530 5709666 -79986088 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr15 5709895 5709916 -79985838 + AT_rich Low_complexity Low_complexity 1 21 0 607 280 84 108 chr15 5711148 5711777 -79983977 + HAL1b LINE L1 56 532 -816 3560 238 36 4 chr15 5711834 5712659 -79983095 + MER97a DNA MER1_type? 2 853 -41 365 348 29 47 chr15 5712989 5713480 -79982274 + L1MC/D LINE L1 2119 2563 -3652 263 267 74 48 chr15 5713613 5713924 -79981830 + L1MC/D LINE L1 2746 3064 -3151 559 307 76 57 chr15 5713968 5714336 -79981418 + L1MC/D LINE L1 3146 3520 -2695 361 342 26 0 chr15 5714343 5714460 -79981294 + L1MC/D LINE L1 3564 3683 -2532 270 270 88 65 chr15 5714554 5714895 -79980859 + L1MC/D LINE L1 4972 5320 -895 268 175 53 184 chr15 5714907 5715021 -79980733 + L1MC/D LINE L1 5483 5581 -2296 1078 315 81 34 chr15 5715320 5716145 -79979609 - L1M4 LINE L1 -1828 4318 3455 1199 201 123 9 chr15 5716229 5716547 -79979207 - MLT1A1 LTR MaLR -11 354 1 299 240 0 13 chr15 5717050 5717125 -79978629 + MIR SINE MIR 14 87 -175 209 247 76 101 chr15 5718841 5718999 -79976755 + MIR3 SINE MIR 23 176 -32 5544 171 43 1 chr15 5719361 5721299 -79974455 + L1PA16 LINE L1 4130 6157 -9 234 0 0 0 chr15 5723080 5723106 -79972648 + (CCCTG)n Simple_repeat Simple_repeat 3 28 0 293 225 0 101 chr15 5723461 5723550 -79972204 - MIR SINE MIR -70 192 113 228 35 0 0 chr15 5723984 5724013 -79971741 + (TC)n Simple_repeat Simple_repeat 1 29 0 306 73 0 0 chr15 5724048 5724089 -79971665 + (TC)n Simple_repeat Simple_repeat 1 41 0 27 0 0 0 chr15 5725623 5725650 -79970104 + AT_rich Low_complexity Low_complexity 1 27 0 1559 130 138 8 chr15 5725650 5725904 -79969850 - AluSg1 SINE Alu -22 287 1 1875 153 91 18 chr15 5725946 5726286 -79969468 - MLT1A1 LTR MaLR 0 365 1 2278 170 118 26 chr15 5726363 5726862 -79968892 - MLT1F1 LTR MaLR -2 565 21 216 0 0 0 chr15 5726867 5726891 -79968863 + (TA)n Simple_repeat Simple_repeat 2 25 0 2228 113 3 13 chr15 5726893 5727194 -79968560 - AluSx SINE Alu -14 298 1 1024 268 54 62 chr15 5727337 5727406 -79968348 - L1ME3A LINE L1 -219 5951 5883 2307 96 0 0 chr15 5727406 5727697 -79968057 - AluSx SINE Alu -17 295 5 1024 268 54 62 chr15 5727697 5728292 -79967462 - L1ME3A LINE L1 -287 5883 5292 603 281 133 0 chr15 5728353 5728563 -79967191 + MIR SINE MIR 3 240 -22 1808 96 137 4 chr15 5729284 5729554 -79966200 + AluSq SINE Alu 2 307 -6 249 284 128 27 chr15 5733287 5733435 -79962319 - MIR SINE MIR -31 231 69 216 135 0 0 chr15 5737318 5737355 -79958399 + (T)n Simple_repeat Simple_repeat 1 37 0 322 299 51 26 chr15 5737594 5737711 -79958043 + L1ME LINE L1 66 185 -5934 377 337 155 47 chr15 5737753 5738004 -79957750 + L1ME LINE L1 4730 5037 -1092 2378 96 3 3 chr15 5738004 5738306 -79957448 + AluSx SINE Alu 2 303 -9 377 337 155 47 chr15 5738306 5738434 -79957320 + L1ME LINE L1 5037 5150 -979 450 274 125 0 chr15 5738436 5738604 -79957150 + L1ME LINE L1 5182 5370 -759 384 313 42 0 chr15 5738652 5738818 -79956936 + L1ME LINE L1 5448 5620 -533 2146 176 60 56 chr15 5738836 5739354 -79956400 - MLT2B1 LTR ERVL 0 520 1 329 218 39 13 chr15 5739354 5739432 -79956322 - MER112 DNA MER1_type -60 200 121 1418 184 90 15 chr15 5739739 5740005 -79955749 - AluJb SINE Alu -12 290 5 224 298 0 18 chr15 5740257 5740314 -79955440 + L2 LINE L2 3200 3255 -17 2010 151 10 0 chr15 5740342 5740641 -79955113 - AluJb SINE Alu -2 310 9 469 243 53 13 chr15 5741171 5741323 -79954431 - MER103 DNA DNA -3 163 6 186 316 53 0 chr15 5741528 5741585 -79954169 + MIR SINE MIR 91 150 -58 253 314 81 0 chr15 5742558 5742644 -79953110 - MIR3 SINE MIR -45 163 71 883 266 26 49 chr15 5742732 5743081 -79952673 - MLT2C1 LTR ERVL -2 395 55 347 255 235 13 chr15 5743605 5743758 -79951996 + MER5A DNA MER1_type 3 189 0 401 245 151 69 chr15 5743774 5743814 -79951940 - MER5A DNA MER1_type -8 181 146 2351 105 0 0 chr15 5743814 5744118 -79951636 - AluSp SINE Alu -9 304 1 401 245 151 69 chr15 5744118 5744236 -79951518 - MER5A DNA MER1_type -43 146 10 440 250 27 27 chr15 5744283 5744395 -79951359 + MIR SINE MIR 39 150 -112 1764 181 0 3 chr15 5744400 5744692 -79951062 - AluJo SINE Alu -13 299 9 2074 113 3 3 chr15 5744720 5745024 -79950730 + AluSx SINE Alu 1 304 0 5219 195 43 19 chr15 5745055 5745609 -79950145 + L1MB3 LINE L1 3984 4523 -1660 2227 147 31 3 chr15 5745609 5745963 -79949791 - THE1B LTR MaLR 0 364 1 5219 195 43 19 chr15 5745963 5747546 -79948208 + L1MB3 LINE L1 4523 6176 -7 1274 181 76 24 chr15 5747620 5747869 -79947885 + AluJo SINE Alu 50 311 -1 457 285 48 5 chr15 5748535 5748721 -79947033 - L1ME3A LINE L1 -5 6165 5972 585 119 0 0 chr15 5748873 5748957 -79946797 + Alu SINE Alu 218 301 -10 837 292 144 41 chr15 5749186 5749609 -79946145 - L1MEc LINE L1 -2505 3710 3229 2399 74 10 7 chr15 5749609 5749919 -79945835 - AluY SINE Alu 0 311 1 837 292 144 41 chr15 5749919 5749981 -79945773 - L1MEc LINE L1 -2986 3229 3175 6572 83 11 7 chr15 5750004 5751327 -79944427 - L1PA10 LINE L1 0 6168 4850 350 283 24 72 chr15 5752123 5752194 -79943560 - LTR41 LTR ERVL -615 158 85 2339 80 0 10 chr15 5752194 5752522 -79943232 + AluY SINE Alu 1 325 0 350 283 24 72 chr15 5752522 5752613 -79943141 - LTR41 LTR ERVL -688 85 1 405 39 0 0 chr15 5752738 5752789 -79942965 + (TG)n Simple_repeat Simple_repeat 2 52 0 654 314 73 17 chr15 5752894 5753248 -79942506 - L1MEc LINE L1 -3601 2614 2283 715 186 122 5 chr15 5753279 5753467 -79942287 - MLT1B LTR MaLR 0 390 181 925 91 8 0 chr15 5753495 5753616 -79942138 - AluSp/q SINE Alu -14 299 178 822 134 474 21 chr15 5753667 5753861 -79941893 - LTR12 LTR ERV1 -507 207 55 244 250 0 0 chr15 5753861 5753913 -79941841 - LTR30 LTR ERV1 -670 52 1 248 149 85 0 chr15 5754109 5754156 -79941598 + L2 LINE L2 3203 3253 -60 1992 189 36 5 chr15 5754203 5754595 -79941159 + MLT2D LTR ERVL 3 406 -8 833 242 63 62 chr15 5755465 5755703 -79940051 - MER77 LTR ERV1 -3 602 454 2586 60 0 16 chr15 5755703 5756018 -79939736 + AluY SINE Alu 1 310 -1 833 242 63 62 chr15 5756018 5756197 -79939557 - MER77 LTR ERV1 -151 454 277 320 263 94 60 chr15 5756221 5756486 -79939268 - MER21B LTR ERV1 -400 205 57 771 196 67 11 chr15 5756739 5756918 -79938836 - MER5A DNA MER1_type 0 189 1 485 227 117 19 chr15 5757713 5757867 -79937887 + MER5A DNA MER1_type 1 169 -20 22 70 0 0 chr15 5758246 5758289 -79937465 + AT_rich Low_complexity Low_complexity 1 43 0 1896 190 0 0 chr15 5758765 5759065 -79936689 + AluJb SINE Alu 1 300 -12 208 247 0 14 chr15 5759074 5759147 -79936607 + A-rich Low_complexity Low_complexity 3 74 0 1547 192 95 24 chr15 5759677 5760047 -79935707 - MSTD LTR MaLR 0 396 1 2427 105 0 0 chr15 5760693 5760998 -79934756 - AluSg SINE Alu -4 306 2 414 0 0 0 chr15 5761126 5761172 -79934582 + (TG)n Simple_repeat Simple_repeat 2 47 0 414 267 109 48 chr15 5761486 5761651 -79934103 - MER5B DNA MER1_type -1 177 3 592 231 105 31 chr15 5762872 5763200 -79932554 + L1MCc LINE L1 1354 1874 -4961 * 765 221 76 42 chr15 5763173 5763206 -79932548 + L1M4 LINE L1 5143 5173 -1768 1770 162 43 16 chr15 5763206 5763323 -79932431 + AluJb SINE Alu 1 113 -199 195 42 0 0 chr15 5763323 5763347 -79932407 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1770 162 43 16 chr15 5763347 5763532 -79932222 + AluJb SINE Alu 113 311 -1 765 221 76 42 chr15 5763532 5763828 -79931926 + L1M4 LINE L1 5173 5483 -1458 1847 154 104 82 chr15 5763944 5764301 -79931453 - MLT1C LTR MaLR -4 463 92 1923 114 81 0 chr15 5764301 5764573 -79931181 - AluSc SINE Alu -15 294 1 1847 154 104 82 chr15 5764573 5764668 -79931086 - MLT1C LTR MaLR -375 92 1 1202 160 9 27 chr15 5766812 5767037 -79928717 - MLT1A1 LTR MaLR 0 365 145 279 173 0 0 chr15 5767051 5767103 -79928651 + CT-rich Low_complexity Low_complexity 3 54 0 2012 98 0 52 chr15 5767109 5767396 -79928358 - AluSg SINE Alu -38 272 1 908 124 20 13 chr15 5767396 5767549 -79928205 - MLT1A1 LTR MaLR -209 156 3 233 298 67 19 chr15 5767692 5767796 -79927958 + L1ME4a LINE L1 5959 6067 -54 1057 153 5 20 chr15 5769379 5769582 -79926172 - MER96B DNA MER1_type? -165 252 53 294 327 113 37 chr15 5769605 5770072 -79925682 + L1M4 LINE L1 4048 4593 -1553 1905 152 7 7 chr15 5770072 5770368 -79925386 + AluSx SINE Alu 1 296 -16 294 327 113 37 chr15 5770368 5770633 -79925121 + L1M4 LINE L1 4593 4836 -1310 2361 81 0 29 chr15 5770660 5770967 -79924787 + AluSc SINE Alu 1 298 -11 363 250 13 0 chr15 5770984 5771060 -79924694 + MER81 DNA DNA 2 78 -36 394 273 169 26 chr15 5771134 5771288 -79924466 + MER5B DNA MER1_type 3 178 0 533 271 72 62 chr15 5771914 5772346 -79923408 + HAL1 LINE L1 1239 1674 -833 2521 84 0 0 chr15 5774183 5774493 -79921261 + AluY SINE Alu 2 311 0 186 275 50 0 chr15 5774527 5774607 -79921147 + L2 LINE L2 2570 2653 -661 2307 164 13 0 chr15 5774687 5775077 -79920677 - MSTD LTR MaLR 0 396 2 360 0 0 0 chr15 5777690 5777730 -79918024 + (TG)n Simple_repeat Simple_repeat 2 41 0 415 163 0 22 chr15 5778543 5778635 -79917119 + CT-rich Low_complexity Low_complexity 3 92 0 195 42 0 0 chr15 5778635 5778659 -79917095 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr15 5778769 5778791 -79916963 + GC_rich Low_complexity Low_complexity 1 22 0 3152 193 22 3 chr15 5779189 5779837 -79915917 - L1MB5 LINE L1 -1 6173 5514 239 278 0 0 chr15 5780398 5780452 -79915302 + MER53 DNA DNA 1 54 -135 605 152 32 70 chr15 5780454 5780612 -79915142 + L1MB2 LINE L1 6020 6171 0 284 215 0 0 chr15 5780613 5780678 -79915076 - MER53 DNA DNA -33 156 92 186 314 0 0 chr15 5783576 5783627 -79912127 + MIR SINE MIR 98 148 -60 2257 106 0 3 chr15 5783698 5783990 -79911764 - AluSx SINE Alu -21 291 1 3256 171 9 28 chr15 5784366 5785034 -79910720 + L1MB3 LINE L1 5528 6182 -1 949 167 27 45 chr15 5785683 5785905 -79909849 - MER20 DNA MER1_type -1 218 1 2088 131 7 3 chr15 5788353 5788659 -79907095 + AluSc SINE Alu 1 307 -2 2500 100 0 0 chr15 5788669 5788979 -79906775 + AluSg SINE Alu 1 310 0 231 291 139 12 chr15 5788983 5789148 -79906606 - MLT1J LTR MaLR -92 419 234 227 262 49 0 chr15 5789790 5789851 -79905903 - MLT1L LTR MaLR -351 264 201 343 289 39 31 chr15 5790268 5790396 -79905358 - MIR SINE MIR -85 177 49 306 283 87 3 chr15 5790469 5790660 -79905094 - MIR SINE MIR -3 259 2 381 320 71 63 chr15 5792074 5792562 -79903192 - L1MC/D LINE L1 -527 5594 5311 1570 136 99 0 chr15 5792562 5792864 -79902890 - L1MA9 LINE L1 -5 6307 5976 381 320 71 63 chr15 5792864 5792911 -79902843 - L1MC/D LINE L1 -810 5311 5266 2072 139 0 3 chr15 5793117 5793411 -79902343 + AluSx SINE Alu 1 293 -19 371 318 81 52 chr15 5793442 5793864 -79901890 - L1MC/D LINE L1 -1101 5045 4637 2395 108 0 0 chr15 5793864 5794169 -79901585 - AluSx SINE Alu -7 305 1 371 318 81 52 chr15 5794169 5794637 -79901117 - L1MC/D LINE L1 -1509 4637 4129 2796 222 82 68 chr15 5794747 5795582 -79900172 - L1MC5 LINE L1 -112 7849 6992 2650 63 0 0 chr15 5795582 5795885 -79899869 + AluY SINE Alu 1 303 -8 2796 222 82 68 chr15 5795885 5796221 -79899533 - L1MC5 LINE L1 -969 6992 6662 1463 246 71 62 chr15 5796238 5796775 -79898979 + MLT1F LTR MaLR 1 542 0 28 29 0 0 chr15 5797154 5797189 -79898565 + AT_rich Low_complexity Low_complexity 1 35 0 394 288 107 40 chr15 5797331 5797613 -79898141 - L1MC5 LINE L1 -359 5762 5643 235 298 0 39 chr15 5799248 5799352 -79896402 + L2 LINE L2 2926 3025 -288 757 206 75 33 chr15 5802384 5802598 -79893156 + MER58A DNA MER1_type 1 223 -1 667 180 29 41 chr15 5802690 5802862 -79892892 - MER3 DNA MER1_type -30 179 10 1765 153 31 59 chr15 5805116 5805437 -79890317 + AluJb SINE Alu 1 312 0 2485 70 0 7 chr15 5805484 5805785 -79889969 + AluSp SINE Alu 1 299 -14 4388 189 31 2 chr15 5807873 5808783 -79886971 - L1MA8 LINE L1 -4 6287 5352 1656 198 64 1 chr15 5809582 5810071 -79885683 - MER68 LTR ERV1 0 562 8 224 338 14 0 chr15 5810120 5810191 -79885563 + MIR SINE MIR 50 121 -141 1027 200 9 9 chr15 5811325 5811540 -79884214 + MER20 DNA MER1_type 3 217 -2 2422 96 0 6 chr15 5811556 5811870 -79883884 - AluSq SINE Alu -1 312 1 2244 109 0 13 chr15 5812811 5813113 -79882641 + AluSq SINE Alu 1 298 -15 845 209 0 23 chr15 5815140 5815312 -79880442 + AluJo SINE Alu 1 168 -144 240 152 0 0 chr15 5815314 5815360 -79880394 + Alu SINE Alu 84 129 -4 238 302 174 0 chr15 5817245 5817331 -79878423 - MIR SINE MIR -115 147 47 184 277 126 63 chr15 5817413 5817452 -79878302 + L3 LINE CR1 1298 1333 -244 500 198 27 9 chr15 5817452 5817563 -79878191 - MER81 DNA DNA 0 114 2 184 277 126 63 chr15 5817563 5817682 -79878072 + L3 LINE CR1 1333 1466 -111 212 204 23 0 chr15 5819084 5819128 -79876626 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 321 320 0 0 chr15 5819128 5819206 -79876548 - L2 LINE L2 0 3272 3195 699 294 124 8 chr15 5819682 5820046 -79875708 - MLT1J2 LTR MaLR -7 443 38 319 167 0 0 chr15 5820972 5821026 -79874728 - MIR SINE MIR -131 131 78 1417 254 58 32 chr15 5823024 5823492 -79872262 - L1MB3 LINE L1 -6 6177 5686 322 135 0 0 chr15 5823593 5823645 -79872109 + Alu SINE Alu 239 290 -12 278 224 0 33 chr15 5824910 5825093 -79870661 + (TG)n Simple_repeat Simple_repeat 1 177 0 245 242 8 0 chr15 5825112 5825240 -79870514 + (TG)n Simple_repeat Simple_repeat 1 129 0 297 239 28 0 chr15 5825258 5825367 -79870387 + (TG)n Simple_repeat Simple_repeat 1 112 0 2354 66 0 7 chr15 5826683 5826985 -79868769 + AluY SINE Alu 1 300 -11 2746 9 0 0 chr15 5829610 5829948 -79865806 + L1HS LINE L1 5815 6152 -3 353 257 48 67 chr15 5829948 5830053 -79865701 + L1MDa LINE L1 2382 2517 -4056 181 125 0 50 chr15 5836904 5836944 -79858810 + MER5A DNA MER1_type 84 121 -68 660 255 11 21 chr15 5837300 5837488 -79858266 + MER5A DNA MER1_type 4 189 0 198 0 0 0 chr15 5839030 5839052 -79856702 + (GAGAA)n Simple_repeat Simple_repeat 4 25 0 2170 109 0 7 chr15 5839401 5839704 -79856050 - AluSx SINE Alu -11 301 1 1060 147 11 16 chr15 5839807 5839991 -79855763 - FRAM SINE Alu -1 175 1 343 202 12 36 chr15 5842113 5842197 -79853557 + L1MC/D LINE L1 5680 5761 -2047 232 294 24 8 chr15 5842327 5842453 -79853301 + (CACCC)n Simple_repeat Simple_repeat 3 130 0 279 283 81 30 chr15 5844139 5844238 -79851516 + MER5A DNA MER1_type 84 187 -2 212 214 18 36 chr15 5844302 5844358 -79851396 + L2 LINE L2 1861 1915 -1399 222 236 28 66 chr15 5844692 5844798 -79850956 + L2 LINE L2 2889 2990 -282 948 178 6 0 chr15 5846038 5846212 -79849542 - L1PA12 LINE L1 -4509 3072 2898 383 235 130 9 chr15 5846365 5846480 -79849274 - MIR SINE MIR -17 245 117 238 336 26 18 chr15 5846917 5847030 -79848724 + MIR SINE MIR 109 222 -40 2070 115 0 38 chr15 5848345 5848659 -79847095 + AluSx SINE Alu 1 302 -10 509 227 84 45 chr15 5848733 5848887 -79846867 - MER103 DNA DNA -2 164 5 825 194 0 0 chr15 5849338 5849518 -79846236 + (TG)n Simple_repeat Simple_repeat 1 180 0 180 279 162 0 chr15 5851027 5851095 -79844659 + L2 LINE L2 3184 3262 -10 303 344 29 70 chr15 5854522 5854763 -79840991 + HAL1 LINE L1 822 1052 -1455 698 176 80 75 chr15 5855088 5855239 -79840515 + L1MC5 LINE L1 3400 3549 -2597 1822 160 3 7 chr15 5855239 5855545 -79840209 + AluJo SINE Alu 1 305 -7 1851 122 7 53 chr15 5855550 5855854 -79839900 + AluSx SINE Alu 1 290 -22 698 176 80 75 chr15 5855854 5855935 -79839819 + L1MC5 LINE L1 3552 3639 -2507 1909 198 57 18 chr15 5855937 5856133 -79839621 + L1MC5 LINE L1 3770 3957 -2189 2501 65 0 3 chr15 5856133 5856441 -79839313 + AluY SINE Alu 1 307 -4 1909 198 57 18 chr15 5856441 5856733 -79839021 + L1MC5 LINE L1 3957 4277 -1869 3883 158 6 39 chr15 5857822 5858546 -79837208 - L1MD1 LINE L1 -3 6239 5540 1466 86 5 32 chr15 5858881 5859101 -79836653 - AluSg/x SINE Alu -12 298 85 3835 138 320 96 chr15 5859532 5860914 -79834840 - pTR5 LTR ERV1 -1 2437 745 2184 108 10 0 chr15 5860914 5861210 -79834544 + AluSx SINE Alu 10 308 -4 513 232 51 133 chr15 5861535 5861888 -79833866 - L1M4 LINE L1 -1768 4378 4055 2550 62 0 0 chr15 5862503 5862812 -79832942 + AluY SINE Alu 1 309 -2 1652 245 114 23 chr15 5862814 5863385 -79832369 - L1MEc LINE L1 -5731 665 43 715 129 20 0 chr15 5863681 5863806 -79831948 - AluSg/x SINE Alu 0 307 181 1225 183 40 5 chr15 5863906 5864317 -79831437 + L1MC5 LINE L1 5093 5526 -648 421 186 72 0 chr15 5864306 5864403 -79831351 + L1M3 LINE L1 5423 5526 -654 * 3361 177 36 7 chr15 5864392 5865122 -79830632 + L1MB8 LINE L1 5423 6173 -5 1146 175 0 28 chr15 5865176 5865387 -79830367 + MER2 DNA MER2_type 6 210 -135 2246 93 20 7 chr15 5865677 5865979 -79829775 - AluSx SINE Alu -6 306 1 333 266 21 50 chr15 5866919 5867060 -79828694 - MIR SINE MIR -39 169 32 223 119 30 30 chr15 5867702 5867769 -79827985 + (CAGAGA)n Simple_repeat Simple_repeat 2 68 0 2217 84 3 3 chr15 5868029 5868371 -79827383 + AluSp SINE Alu 1 342 0 342 235 67 67 chr15 5868371 5868550 -79827204 + L1MC5 LINE L1 5774 5952 -1856 4034 128 44 39 chr15 5869060 5869384 -79826370 - L1PA16 LINE L1 -5 6161 5840 2494 74 0 0 chr15 5869384 5869683 -79826071 - AluY SINE Alu -12 299 1 4034 128 44 39 chr15 5869683 5870083 -79825671 - L1PA16 LINE L1 -326 5840 5433 828 204 95 36 chr15 5870139 5870443 -79825311 + L1MC5 LINE L1 6640 6961 -1000 246 32 0 0 chr15 5870528 5870559 -79825195 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2109 87 45 0 chr15 5870560 5870826 -79824928 - AluSg SINE Alu -32 278 1 1095 166 73 106 chr15 5870844 5871212 -79824542 - LTR37A LTR ERV1 -52 374 19 261 0 0 0 chr15 5871212 5871241 -79824513 + (T)n Simple_repeat Simple_repeat 1 29 0 262 333 21 0 chr15 5871313 5871409 -79824345 - MER31-int LTR ERV1 -735 4201 4104 2341 84 0 10 chr15 5871752 5872048 -79823706 - AluSg SINE Alu -15 295 3 1770 154 14 17 chr15 5874175 5874467 -79821287 + AluJb SINE Alu 21 311 -1 1036 220 130 43 chr15 5874605 5874951 -79820803 + MER92A LTR ERV1 37 412 0 2567 40 0 17 chr15 5875727 5876029 -79819725 - AluY SINE Alu -14 297 1 331 213 58 85 chr15 5876480 5876528 -79819226 + L1M4 LINE L1 2787 2835 -3311 2373 78 7 0 chr15 5876528 5876851 -79818903 + AluSx SINE Alu 1 325 0 331 213 58 85 chr15 5876851 5876988 -79818766 + L1M4 LINE L1 2835 2969 -3177 3760 226 70 8 chr15 5877218 5878195 -79817559 + L1PB1 LINE L1 6 1042 -5821 349 161 16 0 chr15 5878203 5878265 -79817489 + L1PB1 LINE L1 1094 1156 -5707 15296 188 15 8 chr15 5878270 5883749 -79812005 + L1PB1 LINE L1 1311 6866 -1 937 266 202 12 chr15 5884929 5885440 -79810314 + L1M4 LINE L1 3709 4316 -1830 2015 84 0 4 chr15 5885440 5885690 -79810064 + AluY SINE Alu 1 249 -62 255 31 0 0 chr15 5885843 5885875 -79809879 + (TG)n Simple_repeat Simple_repeat 1 32 0 825 171 39 54 chr15 5885928 5886111 -79809643 + MLT1A1 LTR MaLR 164 345 -20 1773 175 63 29 chr15 5886111 5886494 -79809260 - MSTD LTR MaLR 0 396 1 825 171 39 54 chr15 5886494 5886515 -79809239 + MLT1A1 LTR MaLR 345 365 0 2299 61 0 7 chr15 5889669 5889947 -79805807 + AluY SINE Alu 1 276 -35 215 91 0 23 chr15 5889947 5889991 -79805763 + (CAAAA)n Simple_repeat Simple_repeat 4 46 0 226 274 0 53 chr15 5890603 5890698 -79805056 - L1ME3A LINE L1 0 6170 6081 1488 259 61 13 chr15 5890829 5891307 -79804447 - L1ME3A LINE L1 -202 5968 5468 774 275 100 20 chr15 5891309 5891658 -79804096 + HAL1 LINE L1 1688 2064 -443 6000 239 67 32 chr15 5891676 5892216 -79803538 - L1ME3A LINE L1 -896 5250 4730 2132 119 3 0 chr15 5892216 5892502 -79803252 - AluSx SINE Alu -20 292 6 6000 239 67 32 chr15 5892502 5892590 -79803164 - L1ME3A LINE L1 -1416 4730 4647 2121 114 0 26 chr15 5892590 5892897 -79802857 - AluSq SINE Alu -14 299 1 6000 239 67 32 chr15 5892897 5894371 -79801383 - L1ME3A LINE L1 -1499 4647 3073 6374 84 10 18 chr15 5894378 5895152 -79800602 - L1PA8 LINE L1 0 6291 5528 2351 92 0 0 chr15 5895152 5895455 -79800299 + AluY SINE Alu 1 303 -8 6374 84 10 18 chr15 5895455 5895632 -79800122 - L1PA8 LINE L1 -763 5528 5351 819 133 63 0 chr15 5895610 5895768 -79799986 - L1MA7 LINE L1 -115 6176 6009 * 222 186 17 51 chr15 5896603 5896662 -79799092 + MIR SINE MIR 74 130 -78 5301 165 22 6 chr15 5896834 5897847 -79797907 - L1MB3 LINE L1 -1 6182 5150 243 176 44 59 chr15 5897936 5898004 -79797750 + MER96B DNA MER1_type? 109 175 0 1965 144 44 18 chr15 5898108 5898449 -79797305 - MLT1A1 LTR MaLR -15 350 1 1339 205 28 37 chr15 5898505 5898863 -79796891 + L1MB8 LINE L1 5825 6178 0 1487 176 89 110 chr15 5899288 5899725 -79796029 - LTR12 LTR ERV1 -234 480 53 233 235 0 0 chr15 5899725 5899776 -79795978 - LTR30 LTR ERV1 -670 52 2 359 303 118 11 chr15 5900126 5900304 -79795450 - MER117 DNA MER1_type 0 197 1 1213 245 109 75 chr15 5900595 5901207 -79794547 + L1ME3A LINE L1 5514 6146 -24 2098 137 0 0 chr15 5901253 5901560 -79794194 + AluSx SINE Alu 3 309 -3 1931 218 70 23 chr15 5902025 5902396 -79793358 + MER74B LTR ERVL 66 471 -151 2261 120 15 29 chr15 5902396 5902738 -79793016 + MER1B DNA MER1_type 1 337 0 1931 218 70 23 chr15 5902738 5902898 -79792856 + MER74B LTR ERVL 471 622 0 5931 213 5 9 chr15 5903499 5904802 -79790952 - L1 LINE L1 -1983 4163 2866 6926 42 1 2 chr15 5904802 5905654 -79790100 - L1P LINE L1 -973 5173 4323 321 255 140 32 chr15 5906173 5906197 -79789557 + L2 LINE L2 3099 3119 -153 2297 122 0 0 chr15 5906197 5906509 -79789245 - AluSx SINE Alu 0 312 1 321 255 140 32 chr15 5906509 5906641 -79789113 + L2 LINE L2 3119 3272 0 2936 54 8 3 chr15 5907179 5907549 -79788205 - L1PA8 LINE L1 -1 6171 5800 3123 206 93 18 chr15 5907567 5908328 -79787426 + MER21B LTR ERV1 20 837 -26 1920 127 22 0 chr15 5910575 5910850 -79784904 + AluJb SINE Alu 6 286 -26 685 260 142 31 chr15 5910866 5911154 -79784600 - MLT1I LTR MaLR -89 320 1 299 252 63 47 chr15 5911155 5911282 -79784472 + HAL1b LINE L1 386 514 -834 382 237 89 35 chr15 5911326 5911495 -79784259 + L1MCc LINE L1 25 202 -6221 563 247 17 23 chr15 5911528 5911702 -79784052 + L1MCc LINE L1 1469 1641 -5300 * 1283 236 73 45 chr15 5911700 5912082 -79783672 + L1M4 LINE L1 3791 4183 -1963 2923 155 37 41 chr15 5912084 5912626 -79783128 + MLT2B3 LTR ERVL 1 540 -14 1256 249 89 8 chr15 5912627 5913120 -79782634 + L1M4 LINE L1 4185 4717 -1429 2304 96 3 0 chr15 5914465 5914758 -79780996 - AluSx SINE Alu -18 294 1 21 36 0 0 chr15 5914882 5914910 -79780844 + AT_rich Low_complexity Low_complexity 1 28 0 206 360 0 22 chr15 5914938 5915027 -79780727 + L3b LINE CR1 1397 1483 -100 1760 148 3 25 chr15 5916293 5916576 -79779178 + AluJo SINE Alu 29 305 -7 1326 224 22 102 chr15 5916576 5917066 -79778688 + L1MB8 LINE L1 3482 3932 -2214 1125 213 87 8 chr15 5917075 5917442 -79778312 - L1M4 LINE L1 -816 5330 4935 * 3710 170 38 57 chr15 5917439 5917710 -79778044 + L1MB8 LINE L1 5368 5643 -535 328 109 0 0 chr15 5917710 5917756 -79777998 - MADE1 DNA Mariner 0 80 35 3710 170 38 57 chr15 5917756 5918240 -79777514 + L1MB8 LINE L1 5643 6152 -26 2145 111 3 14 chr15 5918252 5918549 -79777205 + AluY SINE Alu 1 294 -17 2175 104 60 11 chr15 5918549 5918896 -79776858 - MSTA LTR MaLR -64 364 1 235 250 31 0 chr15 5918945 5919009 -79776745 + MER63 DNA MER1_type 997 1062 0 1429 177 141 52 chr15 5919930 5919983 -79775771 + MSTD LTR MaLR 1 48 -348 2409 87 3 3 chr15 5919983 5920295 -79775459 + AluSx SINE Alu 1 312 0 1429 177 141 52 chr15 5920295 5920603 -79775151 + MSTD LTR MaLR 48 394 -2 244 306 20 10 chr15 5920695 5920793 -79774961 + MIR SINE MIR 156 254 -8 215 31 31 0 chr15 5920797 5920829 -79774925 + (CAT)n Simple_repeat Simple_repeat 1 33 0 208 226 38 0 chr15 5921299 5921352 -79774402 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 1445 170 4 61 chr15 5921681 5921958 -79773796 + AluJo SINE Alu 29 289 -23 1590 162 26 26 chr15 5921961 5922270 -79773484 - AluSx SINE Alu -3 309 1 289 225 0 42 chr15 5923508 5923579 -79772175 - L1MB8 LINE L1 -168 6010 5943 585 310 119 29 chr15 5923601 5924291 -79771463 + L1MC4a LINE L1 3341 4092 -2054 21 0 0 0 chr15 5925238 5925259 -79770495 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr15 5925505 5925534 -79770220 + AT_rich Low_complexity Low_complexity 1 29 0 551 271 78 53 chr15 5925536 5925857 -79769897 + L1MC4a LINE L1 5291 5619 -2189 211 213 53 53 chr15 5925909 5925984 -79769770 + L2 LINE L2 3231 3305 -8 341 248 41 92 chr15 5925984 5926014 -79769740 + L1MC4a LINE L1 5675 5705 -2103 2039 127 13 13 chr15 5926014 5926314 -79769440 + AluJb SINE Alu 4 303 -9 2307 79 0 26 chr15 5926314 5926618 -79769136 + AluSq SINE Alu 1 296 -17 341 248 41 92 chr15 5926618 5926804 -79768950 + L1MC4a LINE L1 5703 5881 -1927 411 21 0 0 chr15 5926877 5926925 -79768829 + (CA)n Simple_repeat Simple_repeat 1 48 0 265 326 10 77 chr15 5927087 5927492 -79768262 + L1ME4a LINE L1 4456 4833 -1313 306 256 114 31 chr15 5928239 5928493 -79767261 + L1ME4a LINE L1 5119 5393 -753 592 261 84 28 chr15 5928549 5928798 -79766956 + L1ME4a LINE L1 5381 5643 -478 307 276 113 15 chr15 5928842 5928946 -79766808 + L1ME4a LINE L1 5741 5833 -288 2023 122 49 0 chr15 5928946 5929233 -79766521 + AluSx SINE Alu 1 301 -11 307 276 113 15 chr15 5929233 5929331 -79766423 + L1ME4a LINE L1 5833 5963 -158 30 89 0 0 chr15 5929446 5929525 -79766229 + AT_rich Low_complexity Low_complexity 1 79 0 1979 183 38 19 chr15 5929610 5930030 -79765724 - MSTA LTR MaLR 0 428 1 286 291 31 24 chr15 5930037 5930164 -79765590 - MIR3 SINE MIR -78 130 3 1449 102 69 5 chr15 5931337 5931553 -79764201 - MER30 DNA MER1_type 0 230 1 1322 72 17 17 chr15 5931587 5931768 -79763986 - MER30 DNA MER1_type -49 181 1 1391 223 113 46 chr15 5932745 5933328 -79762426 - L1MC5 LINE L1 -28 7933 7312 2310 83 17 0 chr15 5933357 5933646 -79762108 - AluSc SINE Alu -15 294 1 843 201 57 44 chr15 5933659 5933888 -79761866 - L1MC5 LINE L1 -722 7239 7008 1095 166 73 106 chr15 5934081 5934449 -79761305 + LTR37A LTR ERV1 19 374 -52 2109 87 45 0 chr15 5934467 5934733 -79761021 + AluSg SINE Alu 1 278 -32 213 65 0 0 chr15 5934734 5934765 -79760989 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 828 204 95 36 chr15 5934849 5935153 -79760601 - L1MC5 LINE L1 -1000 6961 6640 2896 127 23 21 chr15 5935209 5935680 -79760074 + L1PA14 LINE L1 5433 5904 -257 2423 157 26 28 chr15 5937711 5938137 -79757617 + MSTB LTR MaLR 1 425 -1 2237 154 24 0 chr15 5938240 5938623 -79757131 - L1MB3 LINE L1 0 6183 5792 207 0 0 0 chr15 5939953 5939976 -79755778 + (CA)n Simple_repeat Simple_repeat 1 23 0 180 0 0 0 chr15 5941250 5941270 -79754484 + (CAT)n Simple_repeat Simple_repeat 3 22 0 971 188 36 5 chr15 5945369 5945561 -79750193 + MER82 DNA MER2_type 7 204 -449 1673 211 111 13 chr15 5945802 5945931 -79749823 + MER82 DNA MER2_type 227 342 -311 189 0 0 0 chr15 5945931 5945952 -79749802 + (CA)n Simple_repeat Simple_repeat 2 22 0 1673 211 111 13 chr15 5945952 5946211 -79749543 + MER82 DNA MER2_type 342 653 0 2178 131 0 3 chr15 5946634 5946939 -79748815 - AluSx SINE Alu -8 304 1 401 179 12 0 chr15 5948488 5948572 -79747182 + GA-rich Low_complexity Low_complexity 1 85 0 2378 76 3 0 chr15 5948881 5949171 -79746583 - AluY SINE Alu -17 294 4 2119 191 6 0 chr15 5949942 5950303 -79745451 + MLT1A1 LTR MaLR 3 365 0 2469 113 28 35 chr15 5951783 5952150 -79743604 - L1PA15 LINE L1 -14 6151 5786 2241 120 0 7 chr15 5952150 5952459 -79743295 - AluSx SINE Alu -5 307 1 2469 113 28 35 chr15 5952459 5952490 -79743264 - L1PA15 LINE L1 -379 5786 5756 1201 244 13 0 chr15 5952492 5952799 -79742955 + L1P LINE L1 2562 2872 -3274 5864 214 6 9 chr15 5952982 5954284 -79741470 - L1 LINE L1 -1983 4879 3582 7871 37 2 0 chr15 5954284 5955234 -79740520 - L1PA5 LINE L1 -973 5173 4222 7495 38 7 0 chr15 5955234 5956214 -79739540 + L1PA5 LINE L1 5169 6154 0 4806 139 51 38 chr15 5956228 5956698 -79739056 - L1PBa LINE L1 -3267 3595 3133 3192 75 49 5 chr15 5956698 5957082 -79738672 + MLT2A1 LTR ERVL 1 407 -37 221 0 35 0 chr15 5957082 5957111 -79738643 + (TA)n Simple_repeat Simple_repeat 2 31 0 3192 75 49 5 chr15 5957111 5957151 -79738603 + MLT2A1 LTR ERVL 407 444 0 4806 139 51 38 chr15 5957151 5958137 -79737617 - L1PBa LINE L1 -3729 3133 2132 286 172 65 32 chr15 5958243 5958336 -79737418 - L1ME4a LINE L1 -1 6120 6025 231 36 0 0 chr15 5958367 5958395 -79737359 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 3977 66 15 11 chr15 5958395 5958925 -79736829 - LTR6B LTR ERV1 -26 532 1 4151 167 79 4 chr15 5958925 5959854 -79735900 - L1PBa LINE L1 -4728 2135 990 * 6004 147 11 11 chr15 5959849 5961124 -79734630 + L1PB1 LINE L1 4511 5793 -358 489 17 0 0 chr15 5961124 5961182 -79734572 + (TA)n Simple_repeat Simple_repeat 2 59 0 6004 147 11 11 chr15 5961182 5961541 -79734213 + L1PB1 LINE L1 5793 6150 -1 2411 88 0 0 chr15 5962722 5963016 -79732738 - AluSg SINE Alu -15 295 2 239 241 0 0 chr15 5963359 5963417 -79732337 + L1MB4 LINE L1 5688 5745 -2063 3796 90 43 2 chr15 5963519 5964051 -79731703 + MER41A LTR ERV1 1 554 0 4412 127 97 35 chr15 5965508 5966829 -79728925 - pTR5 LTR ERV1 0 2438 743 1947 144 6 41 chr15 5969510 5969568 -79726186 + L1MB4 LINE L1 5852 5911 -269 2257 91 37 0 chr15 5969568 5969866 -79725888 + AluSg SINE Alu 2 310 0 1947 144 6 41 chr15 5969866 5970148 -79725606 + L1MB4 LINE L1 5911 6180 0 26 0 0 0 chr15 5970477 5970503 -79725251 + AT_rich Low_complexity Low_complexity 1 26 0 987 315 120 42 chr15 5970891 5971859 -79723895 + L2 LINE L2 1705 2747 -567 900 333 53 5 chr15 5972077 5972542 -79723212 - L2 LINE L2 -189 3083 2590 367 279 83 59 chr15 5972774 5972978 -79722776 + L2 LINE L2 2287 2495 -819 2251 107 3 3 chr15 5973397 5973707 -79722047 - AluSx SINE Alu -2 310 1 1707 122 52 38 chr15 5974014 5974181 -79721573 - AluJo SINE Alu -21 291 117 234 0 0 0 chr15 5974181 5974207 -79721547 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1707 122 52 38 chr15 5974207 5974326 -79721428 - AluJo SINE Alu -195 117 1 3220 233 40 55 chr15 5976957 5977200 -79718554 + L1MB8 LINE L1 2839 3084 -3062 2259 109 0 0 chr15 5977200 5977504 -79718250 + AluSg1 SINE Alu 1 304 -5 3220 233 40 55 chr15 5977504 5977880 -79717874 + L1MB8 LINE L1 3084 3464 -2682 1920 154 3 22 chr15 5977880 5978191 -79717563 + AluJo SINE Alu 1 305 -7 3220 233 40 55 chr15 5978191 5978681 -79717073 + L1MB8 LINE L1 3464 3932 -2214 1151 215 87 8 chr15 5978690 5979057 -79716697 - L1M4 LINE L1 -816 5330 4935 * 3747 172 38 57 chr15 5979054 5979325 -79716429 + L1MB8 LINE L1 5368 5643 -535 330 109 0 0 chr15 5979325 5979371 -79716383 - MADE1 DNA Mariner 0 80 35 3747 172 38 57 chr15 5979371 5979855 -79715899 + L1MB8 LINE L1 5643 6152 -26 2167 116 0 13 chr15 5979867 5980170 -79715584 + AluY SINE Alu 1 299 -12 232 115 77 0 chr15 5980170 5980222 -79715532 - MER44D DNA MER2_type -123 582 527 * 3971 123 15 2 chr15 5980218 5980874 -79714880 + MER72 LTR ERV1 9 722 0 547 134 229 0 chr15 5980874 5981003 -79714751 - MER44D DNA MER2_type -167 438 10 4184 45 16 10 chr15 5981501 5981988 -79713766 - LTR2B LTR ERV1 0 490 1 26 50 0 0 chr15 5983855 5983895 -79711859 + GC_rich Low_complexity Low_complexity 1 40 0 30 27 0 0 chr15 5984955 5984992 -79710762 + AT_rich Low_complexity Low_complexity 1 37 0 325 314 38 0 chr15 5985434 5985539 -79710215 + MIR SINE MIR 35 143 -119 362 274 89 45 chr15 5985799 5985978 -79709776 + MIR SINE MIR 9 195 -67 411 264 139 79 chr15 5986696 5987246 -79708508 - L1ME2 LINE L1 -235 5929 5306 327 262 131 45 chr15 5987392 5987613 -79708141 - L1ME2 LINE L1 -1039 5107 4868 2315 104 0 0 chr15 5987707 5988006 -79707748 - AluSq SINE Alu -14 299 1 304 239 68 118 chr15 5988032 5988371 -79707383 - L1ME2 LINE L1 -1956 4190 3869 260 207 0 17 chr15 5988575 5988633 -79707121 - L1MC4 LINE L1 -2 8040 7984 1477 211 61 8 chr15 5988646 5989006 -79706748 - L1MC4 LINE L1 -399 7643 7265 1460 227 87 48 chr15 5989003 5989195 -79706559 - L1MC4a LINE L1 -830 6978 6795 * 2397 66 13 3 chr15 5989195 5989497 -79706257 - AluY SINE Alu -2 309 5 1460 227 87 48 chr15 5989497 5989829 -79705925 - L1MC4a LINE L1 -1013 6795 6439 237 271 171 11 chr15 5990051 5990320 -79705434 - L1ME2 LINE L1 -2499 3647 3336 4583 152 66 15 chr15 5990344 5991146 -79704608 - MER21A LTR ERV1 -2 929 87 1892 114 4 0 chr15 5991247 5991510 -79704244 + AluSx SINE Alu 47 310 -2 440 286 132 5 chr15 5992024 5992213 -79703541 + LTR50 LTR ERVL 1 213 -582 1929 284 77 24 chr15 5992341 5993323 -79702431 + L1M4 LINE L1 3331 4364 -1782 487 289 61 56 chr15 5993330 5993695 -79702059 + MLT1H1 LTR MaLR 1 377 -178 1019 266 61 66 chr15 5993695 5994254 -79701500 + LTR38 LTR ERV1 1 556 0 487 289 61 56 chr15 5994254 5994434 -79701320 + MLT1H1 LTR MaLR 377 555 0 1153 305 74 6 chr15 5994479 5995129 -79700625 + L1M4 LINE L1 4415 5113 -1033 258 329 0 0 chr15 5995209 5995285 -79700469 + Tigger3(Golem) DNA MER2_type 1 76 -2953 432 199 175 30 chr15 5995286 5995452 -79700302 + L2 LINE L2 2874 3063 -250 1378 164 72 34 chr15 5995473 5995736 -79700018 + Tigger3(Golem) DNA MER2_type 2756 3028 -1 222 171 0 0 chr15 5995737 5995778 -79699976 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 1869 152 10 7 chr15 5995851 5996148 -79699606 + AluJb SINE Alu 1 298 -14 1723 161 65 6 chr15 5996149 5996472 -79699282 + L1PA16 LINE L1 5820 6161 -5 1292 246 32 61 chr15 5996982 5997160 -79698594 - L1MC4a LINE L1 -1856 5952 5770 2214 88 3 0 chr15 5997160 5997490 -79698264 - AluSp SINE Alu 0 331 1 1292 246 32 61 chr15 5997490 5997752 -79698002 - L1MC4a LINE L1 -2038 5770 5523 2389 84 0 10 chr15 5998048 5998358 -79697396 + AluSg SINE Alu 2 308 -2 229 82 20 61 chr15 5998620 5998669 -79697085 - L1MB3 LINE L1 0 6183 6137 2344 152 2 25 chr15 5998677 5999079 -79696675 - L1MB3 LINE L1 0 6183 5791 238 254 34 0 chr15 5999120 5999179 -79696575 + L1M4 LINE L1 73 133 -6409 772 256 13 34 chr15 5999211 5999445 -79696309 + L1M4 LINE L1 829 1057 -5485 1770 147 24 53 chr15 5999472 5999813 -79695941 + MER67A LTR ERV1 86 416 -127 782 150 0 0 chr15 5999815 5999928 -79695826 + AluJb SINE Alu 1 113 -199 204 40 0 0 chr15 5999929 5999954 -79695800 + (TA)n Simple_repeat Simple_repeat 1 25 0 814 181 0 0 chr15 5999993 6000131 -79695623 + MER67A LTR ERV1 406 543 0 1253 214 47 126 chr15 6000131 6000701 -79695053 + L1M4 LINE L1 3907 4431 -2213 378 265 123 24 chr15 6000705 6000916 -79694838 + L1MC5 LINE L1 7701 7932 -29 1394 175 8 16 chr15 6001261 6001513 -79694241 + AluJo SINE Alu 39 288 -24 515 257 7 29 chr15 6001528 6001664 -79694090 + FLAM_A SINE Alu 1 133 0 594 241 123 44 chr15 6001675 6002218 -79693536 + L1ME3A LINE L1 2677 3262 -2884 628 280 88 18 chr15 6002474 6002803 -79692951 + L1ME3A LINE L1 5614 5965 -199 231 274 0 53 chr15 6002938 6003033 -79692721 + L1ME3A LINE L1 6081 6170 0 376 331 20 0 chr15 6003113 6003264 -79692490 + L1ME LINE L1 5479 5632 -538 287 283 18 26 chr15 6003349 6003462 -79692292 - MLT1H LTR MaLR -311 238 127 2337 102 0 0 chr15 6003824 6004118 -79691636 - AluSg SINE Alu -15 295 2 1991 170 50 31 chr15 6004143 6004685 -79691069 + MLT2A2 LTR ERVL 1 554 0 719 181 0 0 chr15 6004685 6004801 -79690953 + Tigger7 DNA MER2_type 2371 2486 -1 647 289 41 18 chr15 6004816 6005034 -79690720 - MIR SINE MIR -32 230 8 197 77 0 0 chr15 6005202 6005228 -79690526 + L2 LINE L2 3207 3232 -40 2020 210 109 16 chr15 6005309 6005805 -79689949 - MER34 LTR ERV1 0 542 1 533 281 141 19 chr15 6007156 6007426 -79688328 + MLT1K LTR MaLR 282 584 -4 2229 110 7 0 chr15 6007681 6007980 -79687774 + AluSx SINE Alu 1 301 -11 499 140 11 43 chr15 6008056 6008149 -79687605 - MER1B DNA MER1_type 0 339 250 * 1228 133 16 0 chr15 6008146 6008334 -79687420 - MER1B DNA MER1_type -106 191 1 303 306 83 0 chr15 6008569 6008677 -79687077 + HAL1b LINE L1 83 199 -1149 326 299 0 0 chr15 6009332 6009429 -79686325 - L1M4 LINE L1 -1258 4888 4792 1013 227 45 39 chr15 6009429 6009759 -79685995 - MLT1B LTR MaLR 0 390 59 1181 164 82 39 chr15 6010112 6010344 -79685410 + Tigger3(Golem) DNA MER2_type 2786 3027 -2 222 171 0 0 chr15 6010345 6010386 -79685368 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 1935 151 10 6 chr15 6010459 6010770 -79684984 + AluJb SINE Alu 1 312 0 1524 234 75 26 chr15 6010798 6011102 -79684652 + L1ME3 LINE L1 5346 5685 -477 2244 102 0 0 chr15 6011102 6011385 -79684369 + AluSx SINE Alu 6 288 -24 1524 234 75 26 chr15 6011385 6011571 -79684183 + L1ME3 LINE L1 5685 5860 -302 999 271 106 31 chr15 6011638 6012189 -79683565 + L2 LINE L2 2718 3310 -3 241 225 69 106 chr15 6012293 6012453 -79683301 - HAL1 LINE L1 -1814 693 540 521 286 77 46 chr15 6012497 6012822 -79682932 + MLT1I LTR MaLR 68 402 -7 471 333 48 33 chr15 6012896 6013293 -79682461 - HAL1 LINE L1 -2057 450 48 294 179 0 0 chr15 6013790 6013846 -79681908 + CT-rich Low_complexity Low_complexity 3 58 0 264 59 0 0 chr15 6013871 6013905 -79681849 + (TTCC)n Simple_repeat Simple_repeat 2 35 0 2190 123 10 0 chr15 6013905 6014213 -79681541 - AluSq SINE Alu -1 312 2 360 235 0 0 chr15 6014724 6014792 -79680962 - MLT1K LTR MaLR -15 573 506 2389 44 14 30 chr15 6014792 6015089 -79680665 - AluY SINE Alu -19 292 1 2248 196 97 6 chr15 6016983 6017487 -79678267 - MER44D DNA MER2_type 0 605 1 1172 171 96 32 chr15 6017509 6017760 -79677994 + MLT2D LTR ERVL 146 412 -2 443 215 114 7 chr15 6017764 6017913 -79677841 - L2 LINE L2 -697 2617 2453 456 112 2 17 chr15 6018232 6018305 -79677449 - MLT1C LTR MaLR 0 467 406 437 241 0 11 chr15 6018399 6018486 -79677268 + MER58 DNA MER1_type 5 90 -125 385 285 10 57 chr15 6018550 6018743 -79677011 + L1MEc LINE L1 638 821 -5575 259 267 70 64 chr15 6018821 6018993 -79676761 + L1MC5 LINE L1 6876 7048 -913 989 232 89 36 chr15 6019012 6019404 -79676350 + L1MC5 LINE L1 7112 7524 -437 2105 265 85 21 chr15 6019484 6020506 -79675248 + L1M4 LINE L1 2670 3756 -2390 286 250 40 0 chr15 6020759 6020835 -79674919 - MLT1B LTR MaLR 0 530 452 548 212 147 41 chr15 6021083 6021328 -79674426 - MLT1B LTR MaLR -118 272 2 924 218 28 40 chr15 6021349 6021514 -79674240 - L1M4 LINE L1 -1373 4773 4611 2426 75 0 0 chr15 6021514 6021806 -79673948 - AluSc SINE Alu -17 292 1 924 218 28 40 chr15 6021806 6021892 -79673862 - L1M4 LINE L1 -1535 4611 4525 789 283 78 44 chr15 6023489 6023899 -79671855 + MLT1L LTR MaLR 184 607 -8 2229 127 51 25 chr15 6024243 6024598 -79671156 + THE1B LTR MaLR 1 364 0 452 169 0 0 chr15 6025488 6025559 -79670195 - AluJ/FRAM SINE Alu -10 302 232 1842 124 0 11 chr15 6025583 6025849 -79669905 - AluSq SINE Alu -50 263 1 1355 212 49 61 chr15 6026351 6026742 -79669012 + MLT1B LTR MaLR 1 386 -4 1536 116 19 0 chr15 6026976 6027191 -79668563 + AluSg/x SINE Alu 83 301 -11 923 192 72 5 chr15 6027507 6027715 -79668039 + MER34 LTR ERV1 1 222 -320 1096 171 35 0 chr15 6027777 6027976 -79667778 + MER34 LTR ERV1 337 542 0 2125 117 0 32 chr15 6028297 6028605 -79667149 + AluSx SINE Alu 1 298 -14 2027 132 0 17 chr15 6030209 6030505 -79665249 + AluSx SINE Alu 1 291 -21 702 246 116 78 chr15 6030665 6031188 -79664566 + L1M4 LINE L1 3796 4297 -1849 14937 125 46 4 chr15 6031188 6033509 -79662245 + Tigger1 DNA MER2_type 2 2418 0 702 246 116 78 chr15 6033509 6033570 -79662184 + L1M4 LINE L1 4297 4354 -1792 2205 115 3 0 chr15 6033570 6033866 -79661888 + AluSx SINE Alu 1 297 -15 702 246 116 78 chr15 6033866 6034583 -79661171 + L1M4 LINE L1 4354 5214 -932 23 68 0 0 chr15 6034906 6034950 -79660804 + AT_rich Low_complexity Low_complexity 1 44 0 564 226 56 78 chr15 6035212 6035518 -79660236 + L1MC5 LINE L1 7610 7908 -53 875 258 113 19 chr15 6035848 6036370 -79659384 + L2 LINE L2 2744 3313 0 1671 287 123 21 chr15 6036494 6037293 -79658461 - L2 LINE L2 -543 2771 1892 500 117 0 0 chr15 6037860 6037937 -79657817 - AluJ/FRAM SINE Alu -4 308 232 1916 105 8 4 chr15 6037961 6038219 -79657535 - AluSq SINE Alu -50 263 5 1718 158 54 3 chr15 6038223 6038558 -79657196 - L1MB3 LINE L1 -40 6143 5792 933 181 0 18 chr15 6039464 6039630 -79656124 + Tigger1 DNA MER2_type 1 163 -2255 * 1100 167 0 77 chr15 6039611 6039659 -79656095 + Tigger1 DNA MER2_type 2202 2252 -166 2577 62 0 0 chr15 6039659 6039964 -79655790 - AluY SINE Alu -6 305 1 1100 167 0 77 chr15 6039964 6040149 -79655605 + Tigger1 DNA MER2_type 2252 2417 -1 1163 265 77 20 chr15 6040915 6041380 -79654374 + L1MC3 LINE L1 1 839 -5583 9450 166 104 77 chr15 6041398 6042712 -79653042 + L1MC3 LINE L1 877 2155 -6425 2272 101 0 7 chr15 6042712 6043018 -79652736 + AluSg SINE Alu 1 304 -6 9450 166 104 77 chr15 6043018 6043114 -79652640 + L1MC3 LINE L1 2155 2247 -6333 1664 80 9 0 chr15 6043114 6043338 -79652416 + L1PA10 LINE L1 5939 6164 -4 9450 166 104 77 chr15 6043338 6043492 -79652262 + L1MC3 LINE L1 2247 2395 -6185 1480 166 50 0 chr15 6043492 6043775 -79651979 - L1MA8 LINE L1 -4 6287 5991 9450 166 104 77 chr15 6043775 6043828 -79651926 + L1MC3 LINE L1 2395 2445 -6135 2637 161 11 25 chr15 6043828 6044299 -79651455 + MER4C LTR ERV1 1 464 -1 9450 166 104 77 chr15 6044299 6044415 -79651339 + L1MC3 LINE L1 2445 2556 -6024 3570 181 106 16 chr15 6044415 6045206 -79650548 + MER21B LTR ERV1 1 862 -1 9450 166 104 77 chr15 6045206 6045451 -79650303 + L1MC3 LINE L1 2556 2793 -5787 1366 201 73 4 chr15 6045451 6045725 -79650029 - AluJo SINE Alu -19 293 1 9450 166 104 77 chr15 6045725 6048651 -79647103 + L1MC3 LINE L1 2793 5640 -2940 2305 82 0 20 chr15 6048651 6048956 -79646798 + AluY SINE Alu 1 299 -12 9450 166 104 77 chr15 6048956 6050240 -79645514 + L1MC3 LINE L1 5640 6888 -1692 1123 179 159 14 chr15 6050240 6050426 -79645328 - MER44D DNA MER2_type -1882 609 451 2455 70 0 3 chr15 6050426 6050724 -79645030 + AluY SINE Alu 1 297 -14 1123 179 159 14 chr15 6050724 6050833 -79644921 - MER44D DNA MER2_type -2040 451 1 9450 166 104 77 chr15 6050833 6051252 -79644502 + L1MC3 LINE L1 6888 7294 -1286 397 239 9 44 chr15 6051252 6051365 -79644389 + MLT1F1 LTR MaLR 25 133 -434 9450 166 104 77 chr15 6051365 6051502 -79644252 + L1MC3 LINE L1 7294 7426 -1154 2097 104 0 42 chr15 6051502 6051810 -79643944 + AluSc SINE Alu 1 295 -14 9450 166 104 77 chr15 6051810 6052247 -79643507 + L1MC3 LINE L1 7426 8580 0 2339 90 3 0 chr15 6054023 6054324 -79641430 + AluSp SINE Alu 1 302 -11 2338 177 20 22 chr15 6055041 6055499 -79640255 + MLT1C LTR MaLR 1 457 -10 489 241 111 128 chr15 6055999 6056560 -79639194 + MLT1G LTR MaLR 40 590 0 2541 62 0 3 chr15 6057205 6057509 -79638245 + AluY SINE Alu 1 303 -8 1903 168 3 0 chr15 6057659 6057957 -79637797 - AluJb SINE Alu -13 299 1 551 240 120 5 chr15 6059044 6059244 -79636510 - MIR SINE MIR -19 243 21 320 310 26 9 chr15 6059233 6059346 -79636408 + MIR SINE MIR 46 160 -102 * 1110 71 0 0 chr15 6059662 6059802 -79635952 + AluSg/x SINE Alu 173 312 0 201 325 44 26 chr15 6062485 6062599 -79633155 - MIR3 SINE MIR -87 121 6 288 239 11 34 chr15 6062603 6062691 -79633063 + (TTCA)n Simple_repeat Simple_repeat 3 88 0 679 312 98 21 chr15 6063757 6064187 -79631567 - L1MC/D LINE L1 -2069 5739 5277 21 0 0 0 chr15 6064266 6064287 -79631467 + AT_rich Low_complexity Low_complexity 1 21 0 309 258 178 48 chr15 6064346 6064525 -79631229 + L1MC4a LINE L1 5795 5949 -1859 2067 153 43 85 chr15 6064525 6065008 -79630746 + MLT2C2 LTR ERVL 1 463 -1 309 258 178 48 chr15 6065008 6065165 -79630589 + L1MC4a LINE L1 5949 6175 -1633 351 96 0 0 chr15 6066263 6066315 -79629439 + (CA)n Simple_repeat Simple_repeat 2 53 0 566 313 82 0 chr15 6067242 6067450 -79628304 - MIR SINE MIR -20 242 18 1354 205 85 3 chr15 6068510 6068670 -79627084 - AluJo SINE Alu -6 306 160 180 0 0 0 chr15 6068670 6068690 -79627064 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1354 205 85 3 chr15 6068690 6068812 -79626942 - AluJo SINE Alu -152 160 1 289 278 22 0 chr15 6069492 6069582 -79626172 - L2 LINE L2 0 3313 3222 1843 104 4 19 chr15 6070995 6071264 -79624490 + AluSx SINE Alu 39 303 -9 204 40 0 0 chr15 6071267 6071292 -79624462 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 464 310 154 16 chr15 6071443 6071814 -79623940 - L1M4 LINE L1 -2579 3567 3146 2169 107 10 0 chr15 6072089 6072379 -79623375 + AluSx SINE Alu 5 297 -15 1693 156 39 67 chr15 6072438 6072796 -79622958 - MER7A DNA MER2_type 0 346 1 260 224 0 141 chr15 6072992 6073063 -79622691 - MIR SINE MIR 0 262 183 1561 148 50 44 chr15 6073063 6073361 -79622393 - AluJo SINE Alu -8 304 5 1814 177 0 3 chr15 6073367 6073661 -79622093 - AluJo SINE Alu -19 293 1 260 224 0 141 chr15 6073661 6073738 -79622016 - MIR SINE MIR -84 178 129 32 26 0 0 chr15 6074565 6074604 -79621150 + AT_rich Low_complexity Low_complexity 1 39 0 240 235 10 49 chr15 6074844 6074860 -79620894 + (TATG)n Simple_repeat Simple_repeat 3 18 -82 198 0 0 0 chr15 6074860 6074882 -79620872 + (TAGG)n Simple_repeat Simple_repeat 1 22 0 240 235 10 49 chr15 6074882 6074967 -79620787 + (TATG)n Simple_repeat Simple_repeat 18 100 0 197 329 24 0 chr15 6074972 6075057 -79620697 - MIR SINE MIR -8 254 168 200 308 11 11 chr15 6075115 6075206 -79620548 - MIR SINE MIR -74 188 98 335 272 68 0 chr15 6075207 6075310 -79620444 - MIR SINE MIR -90 172 63 2580 172 42 22 chr15 6075360 6075865 -79619889 + MLT2B2 LTR ERVL 1 515 0 909 263 211 12 chr15 6076309 6076735 -79619019 + LTR33 LTR ERVL 3 513 -8 335 324 0 0 chr15 6077455 6077560 -79618194 + L1ME2 LINE L1 6038 6142 -22 309 215 15 0 chr15 6077663 6077728 -79618026 + L1MC4 LINE L1 6638 6703 -1339 2613 62 3 0 chr15 6077729 6078038 -79617716 - AluY SINE Alu -1 310 1 710 321 105 24 chr15 6078076 6078970 -79616784 + L1ME3A LINE L1 4401 5367 -779 2478 44 13 32 chr15 6078989 6079305 -79616449 + AluY SINE Alu 1 310 -1 646 310 39 18 chr15 6079433 6079814 -79615940 + L1ME3A LINE L1 5557 5951 -213 28 0 0 0 chr15 6080026 6080054 -79615700 + AT_rich Low_complexity Low_complexity 1 28 0 2113 114 0 23 chr15 6080845 6081144 -79614610 - AluSg SINE Alu -18 292 1 2235 124 3 3 chr15 6083801 6084108 -79611646 - AluSx SINE Alu -5 307 1 189 276 216 17 chr15 6085703 6085884 -79609870 + MIR SINE MIR 19 235 -27 27 0 0 0 chr15 6086154 6086181 -79609573 + AT_rich Low_complexity Low_complexity 1 27 0 3549 123 26 9 chr15 6086181 6086680 -79609074 - L1MC1 LINE L1 0 6333 5821 2073 129 3 0 chr15 6086680 6086967 -79608787 - AluSx SINE Alu -4 308 21 3549 123 26 9 chr15 6086967 6087045 -79608709 - L1MC1 LINE L1 -512 5821 5746 2175 118 0 3 chr15 6087522 6087810 -79607944 - AluSx SINE Alu -25 287 1 1108 221 79 25 chr15 6087856 6088173 -79607581 - L1ME1 LINE L1 -5 6161 5828 4337 238 43 44 chr15 6088418 6089477 -79606277 + L1M4 LINE L1 1 1060 -5586 1984 143 3 20 chr15 6089477 6089778 -79605976 + AluSx SINE Alu 1 296 -16 4337 238 43 44 chr15 6089778 6090033 -79605721 + L1M4 LINE L1 1060 1314 -5332 1827 161 0 30 chr15 6090033 6090337 -79605417 + AluJo SINE Alu 1 295 -17 4337 238 43 44 chr15 6090337 6091037 -79604717 + L1M4 LINE L1 1314 2018 -4628 1458 168 183 40 chr15 6091142 6091542 -79604212 + MSTB2 LTR MaLR 1 457 0 987 206 78 5 chr15 6091542 6091896 -79603858 + L1M4 LINE L1 2588 2970 -3674 390 310 110 0 chr15 6092039 6092194 -79603560 - MER5B DNA MER1_type -4 174 3 315 260 48 19 chr15 6092202 6092306 -79603448 + MIR SINE MIR 13 119 -143 272 26 0 26 chr15 6092466 6092504 -79603250 + (CAT)n Simple_repeat Simple_repeat 3 39 0 396 0 0 0 chr15 6092787 6092831 -79602923 + (CA)n Simple_repeat Simple_repeat 2 45 0 241 320 100 7 chr15 6093110 6093349 -79602405 + L1ME4a LINE L1 904 1172 -4947 255 103 0 0 chr15 6093349 6093388 -79602366 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 241 320 100 7 chr15 6093388 6093417 -79602337 + L1ME4a LINE L1 1172 1197 -4922 2659 148 11 25 chr15 6093544 6093983 -79601771 + Tigger2a DNA MER2_type 1 433 -1 237 340 10 0 chr15 6094151 6094251 -79601503 + L1ME4a LINE L1 4721 4821 -1308 311 303 99 36 chr15 6094310 6094531 -79601223 + L1ME4a LINE L1 4889 5123 -1006 215 30 0 30 chr15 6094593 6094626 -79601128 + (TAAAAA)n Simple_repeat Simple_repeat 2 33 0 275 269 0 25 chr15 6094994 6095113 -79600641 + T-rich Low_complexity Low_complexity 5 120 0 511 254 78 54 chr15 6095236 6095571 -79600183 + L1ME4a LINE L1 5762 6104 0 1174 182 43 38 chr15 6095653 6096000 -79599754 - L1MEc LINE L1 -4176 2220 1872 620 246 77 49 chr15 6095984 6096374 -79599380 - L1MEc LINE L1 -4993 1403 1003 * 2124 273 49 5 chr15 6096415 6097002 -79598752 - L1MEc LINE L1 -5578 818 206 942 282 59 17 chr15 6097010 6097297 -79598457 + ERVL LTR ERVL 1341 1639 -4125 261 0 0 0 chr15 6097981 6098010 -79597744 + (CA)n Simple_repeat Simple_repeat 2 30 0 184 306 81 62 chr15 6098732 6098965 -79596789 - L2 LINE L2 -557 2757 2512 2171 110 3 0 chr15 6098965 6099285 -79596469 + AluSg SINE Alu 1 321 0 184 306 81 62 chr15 6099285 6099435 -79596319 - L2 LINE L2 -802 2512 2366 183 263 53 18 chr15 6099495 6099552 -79596202 + MIR3 SINE MIR 10 68 -140 1802 189 39 8 chr15 6099802 6100162 -79595592 + MLT2D LTR ERVL 3 373 -41 225 246 29 0 chr15 6100162 6100231 -79595523 + (TA)n Simple_repeat Simple_repeat 2 72 0 257 224 0 0 chr15 6100233 6100291 -79595463 + MLT2D LTR ERVL 455 512 -8 2259 89 3 7 chr15 6101357 6101648 -79594106 + AluSg1 SINE Alu 14 303 -6 1156 101 0 0 chr15 6102295 6102444 -79593310 + AluSg/x SINE Alu 149 297 -15 303 177 302 10 chr15 6105666 6105762 -79589992 + MLT1E1 LTR MaLR 2 125 -529 3985 166 26 35 chr15 6105851 6106633 -79589121 + LTR1 LTR ERV1 11 785 0 574 225 0 0 chr15 6106633 6106744 -79589010 + MLT1E1 LTR MaLR 537 647 -7 828 201 65 15 chr15 6106747 6106946 -79588808 + MLT1A2 LTR MaLR 1 209 -165 4494 29 0 0 chr15 6106966 6107487 -79588267 - L1PA5 LINE L1 -1795 4351 3831 8650 38 7 2 chr15 6107487 6109292 -79586462 + L1PA5 LINE L1 4342 6151 -3 761 200 33 7 chr15 6109338 6109488 -79586266 + MLT1A2 LTR MaLR 237 390 0 317 185 169 23 chr15 6111840 6111970 -79583784 + Charlie4a DNA MER1_type 251 399 -109 2395 80 0 13 chr15 6111981 6112294 -79583460 - AluY SINE Alu -2 309 1 1098 60 0 8 chr15 6112295 6112428 -79583326 - AluY SINE Alu -179 132 1 447 125 0 0 chr15 6112436 6112500 -79583254 + Charlie4a DNA MER1_type 408 471 -37 583 274 81 62 chr15 6112537 6113224 -79582530 - L1MEd LINE L1 -4682 1628 871 475 290 38 27 chr15 6114144 6114468 -79581286 + L1M4 LINE L1 4318 4657 -1489 3456 162 89 60 chr15 6114719 6115049 -79580705 - L1MB3 LINE L1 -1 6182 5863 2392 72 10 7 chr15 6115049 6115353 -79580401 - AluY SINE Alu -6 305 1 3456 162 89 60 chr15 6115353 6115682 -79580072 - L1MB3 LINE L1 -320 5863 5545 1964 142 6 19 chr15 6115682 6115993 -79579761 - AluJb SINE Alu 0 312 6 3456 162 89 60 chr15 6115993 6116131 -79579623 - L1MB3 LINE L1 -638 5545 5413 2510 139 39 24 chr15 6116131 6116599 -79579155 - L1MA9 LINE L1 -3 6309 5835 3456 162 89 60 chr15 6116599 6116998 -79578756 - L1MB3 LINE L1 -770 5413 4931 21 57 0 0 chr15 6116999 6117034 -79578720 + AT_rich Low_complexity Low_complexity 1 35 0 2191 112 3 16 chr15 6117270 6117574 -79578180 + AluSx SINE Alu 1 300 -12 2170 113 0 0 chr15 6118607 6118915 -79576839 + AluSx SINE Alu 1 308 0 237 303 37 41 chr15 6118919 6118932 -79576822 + L1MC4a LINE L1 4123 4135 -2011 1947 221 94 29 chr15 6118932 6119546 -79576208 + MLT1E1 LTR MaLR 1 654 0 237 303 37 41 chr15 6119546 6119750 -79576004 + L1MC4a LINE L1 4135 4339 -1807 2512 131 52 24 chr15 6119751 6120076 -79575678 - Tigger2a DNA MER2_type -2275 433 92 195 42 0 0 chr15 6120076 6120100 -79575654 + (GGA)n Simple_repeat Simple_repeat 3 26 0 2512 131 52 24 chr15 6120100 6120193 -79575561 - Tigger2a DNA MER2_type -2616 92 3 403 299 125 5 chr15 6120196 6120380 -79575374 - MIR SINE MIR -7 255 50 253 294 52 0 chr15 6120660 6120813 -79574941 + L1MC4a LINE L1 4883 5043 -1103 330 316 73 38 chr15 6121456 6121884 -79573870 + L1MC4a LINE L1 5260 5706 -415 285 270 98 23 chr15 6121905 6122079 -79573675 + L1MC4a LINE L1 5751 5937 -1871 219 139 0 0 chr15 6122417 6122453 -79573301 + (TA)n Simple_repeat Simple_repeat 2 37 0 270 81 0 0 chr15 6122458 6122495 -79573259 + (TG)n Simple_repeat Simple_repeat 2 38 0 1783 159 22 0 chr15 6122501 6122777 -79572977 - AluJb SINE Alu -30 282 1 287 292 30 77 chr15 6125177 6125274 -79570480 + L2 LINE L2 2613 2700 -614 2468 90 0 0 chr15 6125274 6125575 -79570179 + AluSx SINE Alu 1 301 -11 287 292 30 77 chr15 6125575 6125645 -79570109 + L2 LINE L2 2700 2772 -542 1950 131 0 24 chr15 6126452 6126743 -79569011 + AluSx SINE Alu 21 304 -8 23 33 0 0 chr15 6126743 6126773 -79568981 + AT_rich Low_complexity Low_complexity 1 30 0 477 257 129 83 chr15 6126834 6127201 -79568553 - HAL1 LINE L1 -115 2392 1999 1978 194 6 0 chr15 6127201 6127547 -79568207 - MER7A DNA MER2_type 0 346 1 477 257 129 83 chr15 6127547 6127627 -79568127 - HAL1 LINE L1 -508 1999 1924 437 228 71 16 chr15 6127628 6127812 -79567942 + HAL1 LINE L1 1716 1909 -598 1805 106 14 48 chr15 6127855 6128147 -79567607 - AluSx SINE Alu -30 282 1 318 319 200 0 chr15 6128153 6128338 -79567416 - HAL1 LINE L1 -788 1719 1498 296 254 101 63 chr15 6128341 6128530 -79567224 - L2 LINE L2 -10 3303 3108 248 255 134 34 chr15 6128703 6128942 -79566812 - HAL1 LINE L1 -1171 1336 1074 343 280 99 55 chr15 6128945 6129262 -79566492 - L1MC4 LINE L1 -27 8015 7556 2125 89 64 0 chr15 6129511 6129793 -79565961 - AluSq SINE Alu -13 300 1 806 159 8 0 chr15 6129796 6129928 -79565826 - FLAM_A SINE Alu 0 133 1 1066 282 94 54 chr15 6130849 6130957 -79564797 - L1ME3A LINE L1 -297 5873 5771 2386 78 3 0 chr15 6130957 6131250 -79564504 - AluSg SINE Alu -16 294 1 1066 282 94 54 chr15 6131250 6131972 -79563782 - L1ME3A LINE L1 -399 5771 4996 855 251 119 52 chr15 6131982 6132687 -79563067 - L1ME3A LINE L1 -1197 4949 4031 704 284 163 34 chr15 6132744 6133728 -79562026 - L1ME3A LINE L1 -2734 3412 2302 26323 31 6 0 chr15 6133930 6137844 -79557910 + L1PA4 LINE L1 2252 6175 0 262 280 128 0 chr15 6138496 6138621 -79557133 - MER117 DNA MER1_type 0 197 57 315 268 85 20 chr15 6139360 6139628 -79556126 + L1M3d LINE L1 909 1187 -4704 396 251 144 46 chr15 6139820 6140159 -79555595 + L1MEc LINE L1 1704 1991 -4549 528 273 16 44 chr15 6140159 6140342 -79555412 + HAL1 LINE L1 138 315 -2192 1998 212 75 21 chr15 6140350 6140869 -79554885 - LTR55 LTR ERV -1 547 1 1042 248 234 18 chr15 6141079 6141745 -79554009 + HAL1 LINE L1 1671 2480 -27 2401 98 0 6 chr15 6142153 6142468 -79553286 + AluSq SINE Alu 1 313 0 2140 70 10 37 chr15 6143674 6143973 -79551781 + AluY SINE Alu 1 291 -20 2835 154 90 47 chr15 6144109 6144666 -79551088 - LTR12 LTR ERV1 -133 581 1 2165 103 3 31 chr15 6145184 6145504 -79550250 - AluY SINE Alu 0 311 1 223 224 21 35 chr15 6146134 6146277 -79549477 + (TTAA)n Simple_repeat Simple_repeat 4 144 0 2148 159 118 25 chr15 6147538 6147978 -79547776 - MLT1D LTR MaLR -2 503 23 2057 122 0 3 chr15 6148388 6148682 -79547072 - AluSx SINE Alu -19 293 1 221 360 0 10 chr15 6149128 6149228 -79546526 - L3 LINE CR1 -633 944 846 588 192 0 34 chr15 6149228 6149405 -79546349 + (TCCA)n Simple_repeat Simple_repeat 3 173 0 1554 205 3 0 chr15 6149405 6149688 -79546066 - AluJb SINE Alu -28 284 1 333 283 125 18 chr15 6150370 6150642 -79545112 + L2 LINE L2 2986 3286 -27 1093 111 0 26 chr15 6150666 6150842 -79544912 + AluSg/x SINE Alu 134 305 0 217 265 94 65 chr15 6151237 6151407 -79544347 - MIR SINE MIR -42 220 46 50 0 0 0 chr15 6151604 6151654 -79544100 + AT_rich Low_complexity Low_complexity 1 50 0 302 222 12 0 chr15 6155822 6155903 -79539851 - L1MC4 LINE L1 -1346 6696 6615 347 196 11 76 chr15 6155969 6156061 -79539693 - MER81 DNA DNA -2 112 27 1243 196 0 14 chr15 6158469 6158689 -79537065 + MER101B LTR ERV1 1 217 -353 765 214 22 45 chr15 6159024 6159202 -79536552 - MER82 DNA MER2_type -472 181 8 2362 163 216 161 chr15 6159208 6159452 -79536302 + L1MD3 LINE L1 6659 6888 -1107 444 19 0 0 chr15 6159452 6159505 -79536249 + (CA)n Simple_repeat Simple_repeat 2 54 0 2362 163 216 161 chr15 6159505 6159874 -79535880 + L1MD3 LINE L1 6888 7235 -760 604 230 36 7 chr15 6159874 6160013 -79535741 + MLT1A1 LTR MaLR 6 148 -419 2362 163 216 161 chr15 6160013 6160429 -79535325 + L1MD3 LINE L1 7235 7891 -104 2787 150 27 16 chr15 6161079 6161566 -79534188 + L1MB3 LINE L1 5584 6075 -108 228 299 141 4 chr15 6161968 6162202 -79533552 + L2 LINE L2 2138 2403 -911 589 250 42 32 chr15 6163732 6163979 -79531775 - MER4C LTR ERV1 0 597 325 948 95 7 7 chr15 6164309 6164446 -79531308 + MLT1A1 LTR MaLR 1 137 -228 3785 194 70 36 chr15 6164468 6165292 -79530462 + MER21B LTR ERV1 12 863 0 1229 164 26 17 chr15 6165302 6165533 -79530221 + MLT1A1 LTR MaLR 133 365 0 386 291 94 24 chr15 6165533 6165811 -79529943 + MLT1L LTR MaLR 57 461 -154 1365 206 120 59 chr15 6165881 6166357 -79529397 - MLT1D LTR MaLR 0 505 1 36 23 0 0 chr15 6166403 6166446 -79529308 + AT_rich Low_complexity Low_complexity 1 43 0 1503 114 4 92 chr15 6166721 6166994 -79528760 - AluJb SINE Alu -14 298 50 2097 92 3 46 chr15 6167034 6167339 -79528415 + AluSx SINE Alu 1 292 -20 2541 154 31 1 chr15 6169119 6169762 -79525992 - L1PA13 LINE L1 -626 5539 4874 3772 121 40 8 chr15 6169765 6170370 -79525384 + L1PA13 LINE L1 5540 6163 0 1138 272 175 18 chr15 6172878 6173491 -79522263 - L1ME4a LINE L1 -57 6064 5356 269 289 157 25 chr15 6173733 6173854 -79521900 + MIR SINE MIR 46 182 -80 794 238 121 0 chr15 6173926 6174166 -79521588 + MLT1F1 LTR MaLR 299 567 0 216 100 0 0 chr15 6174168 6174198 -79521556 + MIR SINE MIR 196 225 -37 714 256 102 63 chr15 6174225 6174686 -79521068 + MLT1H LTR MaLR 71 549 0 3782 128 2 6 chr15 6174898 6175427 -79520327 + MER1A DNA MER1_type 1 527 0 2581 171 89 0 chr15 6177229 6177702 -79518052 - MLT2B2 LTR ERVL 0 515 1 1527 171 14 31 chr15 6179218 6179505 -79516249 + AluJo SINE Alu 1 282 -30 2016 103 3 3 chr15 6179604 6179918 -79515836 + AluSx SINE Alu 3 316 0 3483 130 27 30 chr15 6180679 6180729 -79515025 - L1MB3 LINE L1 -3 6180 6131 1848 135 24 0 chr15 6180729 6181026 -79514728 - AluSg SINE Alu -6 304 1 3483 130 27 30 chr15 6181026 6181577 -79514177 - L1MB3 LINE L1 -52 6131 5581 1981 111 0 4 chr15 6181589 6181889 -79513865 + AluSq SINE Alu 10 308 0 322 280 70 14 chr15 6182638 6182781 -79512973 + L1MB8 LINE L1 6027 6177 -1 2942 190 26 3 chr15 6182909 6183489 -79512265 + L1MB3 LINE L1 5591 6183 0 370 306 214 20 chr15 6183713 6183965 -79511789 + L3 LINE CR1 192 492 -1085 253 245 50 86 chr15 6184138 6184277 -79511477 + L3 LINE CR1 743 876 -701 22 35 0 0 chr15 6184990 6185019 -79510735 + AT_rich Low_complexity Low_complexity 1 29 0 355 231 0 0 chr15 6185250 6185315 -79510439 - L2 LINE L2 0 3272 3208 291 288 38 38 chr15 6185512 6185644 -79510110 - L2 LINE L2 -583 2731 2600 2101 114 3 0 chr15 6187582 6187881 -79507873 + AluSq SINE Alu 1 300 -13 25 31 0 0 chr15 6188140 6188172 -79507582 + AT_rich Low_complexity Low_complexity 1 32 0 1784 143 30 50 chr15 6188335 6188436 -79507318 + L1MB3 LINE L1 5824 5925 -258 2201 94 0 7 chr15 6188436 6188753 -79507001 - AluSx SINE Alu 0 312 1 1784 143 30 50 chr15 6188753 6189014 -79506740 + L1MB3 LINE L1 5925 6179 -4 30 0 0 0 chr15 6189015 6189045 -79506709 + AT_rich Low_complexity Low_complexity 1 30 0 239 289 28 42 chr15 6189771 6189913 -79505841 - MER117 DNA MER1_type -38 159 20 27 32 0 32 chr15 6191645 6191664 -79504090 + AT_rich Low_complexity Low_complexity 1 19 -42 487 0 32 0 chr15 6191664 6191727 -79504027 + (CA)n Simple_repeat Simple_repeat 2 66 0 2215 81 0 0 chr15 6191733 6192018 -79503736 - AluSx SINE Alu -27 285 1 27 32 0 32 chr15 6192018 6192054 -79503700 + AT_rich Low_complexity Low_complexity 24 61 0 496 269 85 40 chr15 6192638 6192861 -79502893 - Charlie8 DNA MER1_type -2184 233 1 2031 135 0 6 chr15 6193799 6194110 -79501644 - AluSx SINE Alu -3 309 1 2158 240 64 18 chr15 6196022 6196675 -79499079 + L1ME3A LINE L1 5488 6170 0 910 237 25 29 chr15 6197154 6197247 -79498507 - MER33 DNA MER1_type -2264 321 229 243 0 0 0 chr15 6197247 6197274 -79498480 + (TA)n Simple_repeat Simple_repeat 1 27 0 2450 56 0 10 chr15 6197274 6197580 -79498174 - AluY SINE Alu -8 303 1 910 237 25 29 chr15 6197580 6197703 -79498051 - MER33 DNA MER1_type -2355 230 108 1671 164 40 95 chr15 6197703 6197876 -79497878 + MSTB LTR MaLR 1 182 -244 1818 84 0 0 chr15 6197876 6198113 -79497641 + AluSq SINE Alu 1 237 -76 1671 164 40 95 chr15 6198113 6198166 -79497588 + MSTB LTR MaLR 182 236 -190 2425 44 0 41 chr15 6198166 6198481 -79497273 + AluY SINE Alu 1 302 -9 1671 164 40 95 chr15 6198481 6198704 -79497050 + MSTB LTR MaLR 236 426 0 910 237 25 29 chr15 6198704 6198764 -79496990 - MER33 DNA MER1_type -2477 108 44 306 132 0 0 chr15 6198856 6198909 -79496845 + (TC)n Simple_repeat Simple_repeat 2 54 0 423 56 0 0 chr15 6198909 6198963 -79496791 + (CA)n Simple_repeat Simple_repeat 1 54 0 542 307 77 38 chr15 6199012 6199351 -79496403 + MLT1K LTR MaLR 237 588 0 243 0 0 0 chr15 6199592 6199619 -79496135 + (A)n Simple_repeat Simple_repeat 1 27 0 437 268 150 7 chr15 6200481 6200634 -79495120 - MER5A DNA MER1_type -6 183 9 21 0 0 0 chr15 6200871 6200892 -79494862 + AT_rich Low_complexity Low_complexity 1 21 0 6049 168 45 15 chr15 6201108 6201240 -79494514 - L1MC1 LINE L1 -2 6331 6204 2092 121 0 37 chr15 6201240 6201563 -79494191 - AluSq SINE Alu -2 311 1 6049 168 45 15 chr15 6201563 6202884 -79492870 - L1MC1 LINE L1 -129 6204 4829 581 246 82 10 chr15 6202901 6203096 -79492658 - L1MC1 LINE L1 -1353 4793 4585 32 26 0 0 chr15 6203352 6203391 -79492363 + AT_rich Low_complexity Low_complexity 1 39 0 205 261 0 0 chr15 6203798 6203844 -79491910 + (CA)n Simple_repeat Simple_repeat 2 47 0 909 270 92 57 chr15 6204321 6204862 -79490892 + L1MB5 LINE L1 8 567 -5975 3597 130 9 65 chr15 6204888 6205567 -79490187 + L1MA5 LINE L1 5268 5908 -392 2751 134 23 48 chr15 6205613 6205664 -79490090 + L1MA5 LINE L1 5793 5844 -456 2054 118 3 0 chr15 6205664 6205968 -79489786 + AluSx SINE Alu 3 307 -5 2751 134 23 48 chr15 6205968 6206437 -79489317 + L1MA5 LINE L1 5844 6300 0 2793 234 66 66 chr15 6206461 6206948 -79488806 + L1MB5 LINE L1 592 1077 -5595 1908 155 0 0 chr15 6206948 6207245 -79488509 - AluSx SINE Alu -14 298 2 2793 234 66 66 chr15 6207245 6208384 -79487370 + L1MB5 LINE L1 1077 6664 -8 3879 169 113 64 chr15 6209348 6210686 -79485068 - pTR5 LTR ERV1 0 2438 743 197 319 33 22 chr15 6211430 6211521 -79484233 + MIR SINE MIR 95 186 -76 2340 75 0 0 chr15 6211975 6212269 -79483485 + AluSx SINE Alu 1 294 -18 341 182 15 0 chr15 6212387 6212453 -79483301 + AluJ/FRAM SINE Alu 230 296 -6 1969 114 3 7 chr15 6212517 6212806 -79482948 + AluSx SINE Alu 1 288 -24 254 282 157 14 chr15 6212812 6213028 -79482726 + L1P LINE L1 4053 4299 -1847 5201 179 38 41 chr15 6213190 6215198 -79480556 - L1MA9 LINE L1 -1 7730 5719 217 0 61 0 chr15 6215198 6215231 -79480523 + (TAAAA)n Simple_repeat Simple_repeat 4 38 0 5201 179 38 41 chr15 6215231 6215763 -79479991 - L1MA9 LINE L1 -2012 5719 5187 1769 184 111 8 chr15 6215763 6216122 -79479632 + MSTD LTR MaLR 1 396 0 5201 179 38 41 chr15 6216122 6216777 -79478977 - L1MA9 LINE L1 -2544 5187 4532 1688 158 79 22 chr15 6216777 6217132 -79478622 + THE1C LTR MaLR 1 375 0 5201 179 38 41 chr15 6217132 6218210 -79477544 - L1MA9 LINE L1 -3199 4532 3323 1512 190 31 3 chr15 6218210 6218499 -79477255 - AluJo SINE Alu -15 297 1 5201 179 38 41 chr15 6218499 6218529 -79477225 - L1MA9 LINE L1 -4408 3323 3294 11199 208 61 18 chr15 6218560 6222432 -79473322 + L1MB7 LINE L1 2120 6167 -17 852 209 95 41 chr15 6222447 6222763 -79472991 + MER69 DNA AcHobo 2138 2470 -56 431 298 121 15 chr15 6222795 6223081 -79472673 + L1ME LINE L1 5429 5638 -528 31566 103 7 12 chr15 6223972 6229366 -79466388 + L1PA7 LINE L1 700 6091 -378 2247 60 3 18 chr15 6229366 6229648 -79466106 + AluY SINE Alu 19 296 -15 31566 103 7 12 chr15 6229648 6230025 -79465729 + L1PA7 LINE L1 6091 6468 -1 2019 122 42 0 chr15 6230153 6230440 -79465314 - AluSx SINE Alu -1 311 13 1077 66 7 0 chr15 6230540 6230676 -79465078 + L1PA7 LINE L1 6017 6153 -1 1698 141 67 20 chr15 6230804 6231101 -79464653 - AluSx SINE Alu -1 311 1 372 246 131 8 chr15 6231286 6231416 -79464338 - MER104 DNA Tc2 -14 166 21 402 258 80 13 chr15 6231607 6231758 -79463996 + MER69A DNA AcHobo 13 173 -4 2006 164 49 27 chr15 6231925 6232291 -79463463 + MLT1A2 LTR MaLR 1 374 0 316 262 115 25 chr15 6233312 6233434 -79462320 - L2 LINE L2 0 3313 3181 3023 141 58 0 chr15 6233546 6234028 -79461726 - L1MB2 LINE L1 -2 6169 5660 988 210 223 3 chr15 6234773 6235020 -79460734 - MLT2B2 LTR ERVL -181 233 1 786 201 187 10 chr15 6235020 6235229 -79460525 + MLT1D LTR MaLR 322 505 0 898 242 41 0 chr15 6235317 6235511 -79460243 + MER3 DNA MER1_type 4 205 -4 818 216 11 28 chr15 6235522 6235703 -79460051 + MER5B DNA MER1_type 1 178 0 245 179 128 51 chr15 6236456 6236534 -79459220 + HAL1b LINE L1 604 687 -661 574 258 109 45 chr15 6236713 6236934 -79458820 - MIR SINE MIR -27 235 1 865 173 24 18 chr15 6237256 6237424 -79458330 - L1MA9 LINE L1 0 6312 6144 1154 184 148 0 chr15 6237430 6237704 -79458050 + AluJo SINE Alu 2 311 0 683 157 0 0 chr15 6237707 6237822 -79457932 - L1MA9 LINE L1 -178 6134 6020 204 40 0 0 chr15 6238610 6238635 -79457119 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 231 36 0 0 chr15 6238634 6238662 -79457092 + (CA)n Simple_repeat Simple_repeat 1 28 0 471 157 0 0 chr15 6238734 6238804 -79456950 - MER8 DNA MER2_type 0 239 170 * 2736 131 18 31 chr15 6238787 6239206 -79456548 + Tigger2 DNA MER2_type 2267 2681 -37 1588 175 133 30 chr15 6239206 6239611 -79456143 + LTR7 LTR ERV1 3 449 -1 2736 131 18 31 chr15 6239611 6239649 -79456105 + Tigger2 DNA MER2_type 2681 2718 0 1683 241 27 31 chr15 6240153 6240479 -79455275 + L1M4 LINE L1 4256 4581 -1565 1143 188 14 36 chr15 6240479 6240702 -79455052 + MER20B DNA MER1_type 2 219 0 1683 241 27 31 chr15 6240702 6240860 -79454894 + L1M4 LINE L1 4581 4738 -1408 1750 222 102 14 chr15 6241358 6241867 -79453887 + L1M4 LINE L1 4747 5300 -846 3136 224 21 34 chr15 6241867 6242644 -79453110 + L1MB7 LINE L1 3 769 -5773 4538 182 70 52 chr15 6242648 6243894 -79451860 + L1MB7 LINE L1 4704 5928 -736 5365 105 68 7 chr15 6243894 6244629 -79451125 - LTR17 LTR ERV1 0 780 1 4538 182 70 52 chr15 6244629 6245328 -79450426 + L1MB7 LINE L1 5928 6614 -50 1743 149 20 40 chr15 6245943 6246245 -79449509 - AluJo SINE Alu -16 296 1 379 316 106 28 chr15 6246331 6246755 -79448999 + L2 LINE L2 1820 2276 -1038 288 292 188 0 chr15 6247488 6247632 -79448122 - L2 LINE L2 0 3272 3102 491 294 0 0 chr15 6248716 6248893 -79446861 + G-rich Low_complexity Low_complexity 1 177 0 1448 198 29 3 chr15 6249036 6249349 -79446405 - MER74A LTR ERVL -222 336 16 764 288 171 16 chr15 6250052 6250503 -79445251 + MER20B DNA MER1_type 213 733 -50 1239 110 48 118 chr15 6251236 6251344 -79444410 - L1MA8 LINE L1 -5 6286 6172 2036 129 0 0 chr15 6251344 6251631 -79444123 - AluSx SINE Alu -25 287 1 1239 110 48 118 chr15 6251631 6251834 -79443920 - L1MA8 LINE L1 -119 6172 6013 285 29 0 0 chr15 6253772 6253806 -79441948 + (A)n Simple_repeat Simple_repeat 1 34 0 794 165 0 0 chr15 6305056 6305177 -79390577 + FLAM_A SINE Alu 1 121 -12 499 314 116 59 chr15 6305269 6305617 -79390137 + L1MC4a LINE L1 4161 4547 -1599 2122 121 7 0 chr15 6305617 6305922 -79389832 + AluSx SINE Alu 1 307 -5 499 314 116 59 chr15 6305922 6306066 -79389688 + L1MC4a LINE L1 4547 4681 -1465 1377 246 81 38 chr15 6306118 6306613 -79389141 + MLT1H1 LTR MaLR 38 553 -2 521 155 16 16 chr15 6306623 6306636 -79389118 + GA-rich Low_complexity Low_complexity 3 15 -116 2230 81 0 7 chr15 6306636 6306932 -79388822 + AluSg SINE Alu 1 294 -16 521 155 16 16 chr15 6306932 6307047 -79388707 + GA-rich Low_complexity Low_complexity 14 131 0 386 281 294 0 chr15 6307108 6307336 -79388418 - L2 LINE L2 -4 3309 3015 347 295 127 27 chr15 6307351 6307720 -79388034 + L1MC4a LINE L1 5518 5923 -1885 23 0 0 0 chr15 6308039 6308062 -79387692 + AT_rich Low_complexity Low_complexity 1 23 0 1684 135 11 18 chr15 6308577 6308858 -79386896 + AluJo SINE Alu 1 279 -33 220 180 24 18 chr15 6308968 6309023 -79386731 - MIR SINE MIR -52 156 98 250 140 20 20 chr15 6310607 6310657 -79385097 - MIR SINE MIR -115 147 98 207 256 0 37 chr15 6311299 6311381 -79384373 + (CAAAC)n Simple_repeat Simple_repeat 5 83 0 545 161 5 38 chr15 6311449 6311635 -79384119 + CT-rich Low_complexity Low_complexity 1 180 0 2085 146 108 28 chr15 6311654 6311736 -79384018 + Tigger2 DNA MER2_type 2298 2372 -346 186 43 0 0 chr15 6311736 6311759 -79383995 + (TCC)n Simple_repeat Simple_repeat 2 24 0 2085 146 108 28 chr15 6311759 6312066 -79383688 + Tigger2 DNA MER2_type 2372 2718 0 347 271 33 49 chr15 6312066 6312188 -79383566 + MIR SINE MIR 134 253 -9 2314 193 52 4 chr15 6312414 6312895 -79382859 - MLT1D LTR MaLR -1 504 1 388 331 238 5 chr15 6312984 6313362 -79382392 - L2 LINE L2 -592 2722 2257 772 243 27 0 chr15 6313850 6313998 -79381756 + MER58A DNA MER1_type 1 152 0 1792 149 17 3 chr15 6313998 6314294 -79381460 + L1M2 LINE L1 5401 5700 -612 201 94 0 0 chr15 6314305 6314337 -79381417 + (CATA)n Simple_repeat Simple_repeat 1 32 0 1981 260 58 73 chr15 6314337 6314397 -79381357 + L1MC4 LINE L1 7090 7149 -893 2221 73 0 3 chr15 6314397 6314683 -79381071 + AluY SINE Alu 1 285 -26 1981 260 58 73 chr15 6314683 6314703 -79381051 + L1MC4 LINE L1 7149 7168 -874 180 0 0 0 chr15 6314703 6314723 -79381031 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1981 260 58 73 chr15 6314723 6315601 -79380153 + L1MC4 LINE L1 7168 8036 -6 456 285 72 101 chr15 6315731 6315772 -79379982 - L1MDb LINE L1 -1029 1738 1697 1733 173 3 3 chr15 6315772 6316078 -79379676 - AluJb SINE Alu -2 310 5 456 285 72 101 chr15 6316078 6316534 -79379220 - L1MDb LINE L1 -1070 1697 1148 1786 132 3 21 chr15 6316544 6316832 -79378922 + AluSx SINE Alu 5 287 -25 222 37 0 0 chr15 6316835 6316862 -79378892 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 22 35 0 0 chr15 6316912 6316941 -79378813 + AT_rich Low_complexity Low_complexity 1 29 0 370 260 0 32 chr15 6317945 6318068 -79377686 + L1ME LINE L1 4461 4579 -1567 415 313 74 44 chr15 6318096 6318393 -79377361 + L1ME LINE L1 5357 5662 -459 269 298 67 0 chr15 6318420 6318524 -79377230 + L1ME LINE L1 5703 5813 -357 2392 63 7 0 chr15 6318672 6318975 -79376779 + AluY SINE Alu 1 305 -6 207 0 0 0 chr15 6319142 6319165 -79376589 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2030 91 3 21 chr15 6319167 6319454 -79376300 - AluY SINE Alu -29 282 1 2017 120 0 3 chr15 6319456 6319748 -79376006 - AluSq SINE Alu -22 291 1 279 0 0 0 chr15 6319837 6319868 -79375886 + (CA)n Simple_repeat Simple_repeat 2 32 0 269 267 95 43 chr15 6320424 6320540 -79375214 + MIR SINE MIR 9 130 -132 388 310 9 0 chr15 6320540 6320656 -79375098 - MLT1H LTR MaLR -325 224 108 183 286 36 0 chr15 6321293 6321349 -79374405 + L2 LINE L2 3224 3281 -32 1808 135 12 55 chr15 6321400 6321726 -79374028 + AluJo SINE Alu 1 312 0 291 54 0 0 chr15 6324320 6324357 -79371397 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 263 308 48 10 chr15 6324406 6324510 -79371244 - L2 LINE L2 -52 3261 3154 187 274 226 0 chr15 6324530 6324632 -79371122 - L2 LINE L2 -8 3305 3181 307 351 58 0 chr15 6324723 6324894 -79370860 - L2 LINE L2 -610 2704 2524 731 189 44 9 chr15 6325180 6325406 -79370348 - MER57A LTR ERV1 0 403 201 359 183 49 12 chr15 6325391 6325473 -79370281 - LTR54 LTR ERV1 -271 239 155 * 424 81 16 0 chr15 6325473 6325535 -79370219 + (TC)n Simple_repeat Simple_repeat 2 64 0 761 163 95 0 chr15 6325562 6325709 -79370045 - LTR54 LTR ERV1 -345 165 5 313 241 25 13 chr15 6325852 6325931 -79369823 + GA-rich Low_complexity Low_complexity 3 82 0 2205 127 0 3 chr15 6326138 6326445 -79369309 - AluSc SINE Alu -3 306 1 5624 191 45 28 chr15 6327201 6328661 -79367093 + L1MB3 LINE L1 3982 5415 -768 2450 67 3 3 chr15 6328661 6328959 -79366795 - AluY SINE Alu -13 298 1 5624 191 45 28 chr15 6328959 6329166 -79366588 + L1MB3 LINE L1 5415 5617 -566 333 0 0 0 chr15 6329166 6329203 -79366551 + (TG)n Simple_repeat Simple_repeat 1 37 0 5624 191 45 28 chr15 6329203 6329226 -79366528 + L1MB3 LINE L1 5617 5638 -545 1720 178 0 0 chr15 6329226 6329490 -79366264 - AluJb SINE Alu -32 280 17 5624 191 45 28 chr15 6329490 6329969 -79365785 + L1MB3 LINE L1 5638 6183 0 1456 165 26 0 chr15 6329964 6330230 -79365524 + L1M3 LINE L1 5428 5700 -480 * 265 241 130 37 chr15 6330534 6330642 -79365112 + L2 LINE L2 3187 3304 -9 1934 136 0 52 chr15 6331365 6331551 -79364203 - AluSx SINE Alu -5 307 144 2585 71 0 0 chr15 6331551 6331862 -79363892 - AluY SINE Alu 0 311 1 1934 136 0 52 chr15 6331862 6331999 -79363755 - AluSx SINE Alu -168 144 1 495 242 33 0 chr15 6332188 6332308 -79363446 + MIR SINE MIR 139 262 0 916 182 17 22 chr15 6333236 6333417 -79362337 - MLT2D LTR ERVL -234 180 1 1890 215 20 51 chr15 6333429 6333795 -79361959 + L1M4 LINE L1 4484 4829 -1317 1573 107 5 9 chr15 6333795 6334011 -79361743 - AluSg/x SINE Alu -13 297 83 1890 215 20 51 chr15 6334011 6334197 -79361557 + L1M4 LINE L1 4829 5019 -1127 606 309 55 60 chr15 6334320 6334486 -79361268 + HAL1b LINE L1 73 238 -1110 2274 94 3 0 chr15 6334486 6334801 -79360953 - AluSg SINE Alu 0 316 1 606 309 55 60 chr15 6334801 6335101 -79360653 + HAL1b LINE L1 238 539 -809 2947 82 13 0 chr15 6335106 6335497 -79360257 + L1PA10 LINE L1 5757 6152 -16 24 0 0 0 chr15 6335499 6335523 -79360231 + AT_rich Low_complexity Low_complexity 1 24 0 1594 169 29 88 chr15 6335698 6336153 -79359601 + L1MB7 LINE L1 4946 5373 -773 3557 146 51 2 chr15 6336157 6336280 -79359474 + L1MA9 LINE L1 5653 5768 -544 258 105 0 0 chr15 6336280 6336318 -79359436 + (TG)n Simple_repeat Simple_repeat 1 38 0 3557 146 51 2 chr15 6336318 6336823 -79358931 + L1MA9 LINE L1 5768 6312 0 371 56 19 0 chr15 6336841 6336895 -79358859 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 4266 160 23 27 chr15 6337224 6337427 -79358327 + L1MB7 LINE L1 5366 5568 -616 2613 56 0 0 chr15 6337427 6337732 -79358022 + AluY SINE Alu 1 305 -6 4266 160 23 27 chr15 6337732 6338345 -79357409 + L1MB7 LINE L1 5568 6179 -5 1113 141 32 2 chr15 6338382 6338630 -79357124 + AluSx SINE Alu 2 309 -1 1650 232 99 92 chr15 6338917 6338991 -79356763 + L1MC5 LINE L1 6541 6613 -1348 468 0 0 0 chr15 6338991 6339043 -79356711 + (TG)n Simple_repeat Simple_repeat 2 53 0 1650 232 99 92 chr15 6339043 6339516 -79356238 + L1MC5 LINE L1 6613 7108 -853 2090 129 7 3 chr15 6339516 6339811 -79355943 - AluSx SINE Alu -16 296 1 1650 232 99 92 chr15 6339811 6340128 -79355626 + L1MC5 LINE L1 7108 7421 -540 1057 133 0 0 chr15 6340183 6340334 -79355420 + AluSg/x SINE Alu 144 294 -16 515 248 7 0 chr15 6340343 6340496 -79355258 + GA-rich Low_complexity Low_complexity 4 157 0 1930 135 40 10 chr15 6340569 6340872 -79354882 + AluJb SINE Alu 1 312 0 308 314 25 38 chr15 6341002 6341161 -79354593 + L1ME3A LINE L1 6013 6169 -1 273 301 152 2 chr15 6341608 6341756 -79353998 + MIR SINE MIR 16 182 -62 2522 73 0 3 chr15 6342253 6342566 -79353188 + AluSx SINE Alu 1 312 0 883 220 17 0 chr15 6343294 6343464 -79352290 + MLT1C LTR MaLR 1 173 -217 1020 151 58 16 chr15 6343464 6343751 -79352003 + AluJo SINE Alu 1 353 0 998 222 32 5 chr15 6343783 6343999 -79351755 + MLT1C LTR MaLR 246 467 0 930 238 110 12 chr15 6344167 6344486 -79351268 - MSTD LTR MaLR 0 396 21 2605 116 16 49 chr15 6344486 6344933 -79350821 + MSTB1 LTR MaLR 1 432 0 930 238 110 12 chr15 6344933 6344957 -79350797 - MSTD LTR MaLR -375 21 1 300 182 61 0 chr15 6345126 6345192 -79350562 + LTR50 LTR ERVL 1 70 -725 251 299 106 23 chr15 6345230 6345447 -79350307 + L2 LINE L2 666 900 -2414 1289 224 131 8 chr15 6345599 6345965 -79349789 + L1MD2 LINE L1 5949 6359 0 231 333 138 8 chr15 6346342 6346465 -79349289 + L2 LINE L2 3134 3272 0 1356 157 39 74 chr15 6346509 6346533 -79349221 - L1MC3 LINE L1 0 7785 7762 1800 125 14 54 chr15 6346533 6346671 -79349083 + AluSx SINE Alu 1 143 -167 2339 43 0 7 chr15 6346671 6346950 -79348804 + AluY SINE Alu 35 311 0 1800 125 14 54 chr15 6346950 6347133 -79348621 + AluSx SINE Alu 143 310 0 1356 157 39 74 chr15 6347133 6347444 -79348310 - L1MC3 LINE L1 -23 7762 7461 4053 163 59 131 chr15 6347455 6347988 -79347766 - L1MC3 LINE L1 -658 7127 6557 299 65 22 0 chr15 6347988 6348034 -79347720 + MADE1 DNA Mariner 1 47 -33 4053 163 59 131 chr15 6348034 6348516 -79347238 - L1MC3 LINE L1 -1228 6557 6172 2039 147 0 7 chr15 6348516 6348822 -79346932 - AluSx SINE Alu -8 304 1 4053 163 59 131 chr15 6348822 6349046 -79346708 - L1MC3 LINE L1 -1613 6172 5934 1411 116 5 0 chr15 6349146 6349353 -79346401 + AluSp SINE Alu 90 297 -16 2361 160 21 36 chr15 6349353 6349610 -79346144 - L1MC3 LINE L1 -1928 5857 5609 1798 161 3 7 chr15 6349610 6349909 -79345845 + AluJb SINE Alu 1 298 -14 2361 160 21 36 chr15 6349909 6350119 -79345635 - L1MC3 LINE L1 -2176 5609 5397 2598 64 0 0 chr15 6350455 6350766 -79344988 - AluY SINE Alu 0 311 1 285 280 21 0 chr15 6351291 6351384 -79344370 + MIR SINE MIR 59 153 -109 383 289 128 50 chr15 6351457 6351699 -79344055 + Charlie8 DNA MER1_type 6 266 -2151 436 32 16 16 chr15 6352207 6352270 -79343484 + (CAT)n Simple_repeat Simple_repeat 1 63 0 760 192 0 0 chr15 6352416 6352541 -79343213 - FLAM_A SINE Alu -8 125 1 3841 150 147 107 chr15 6352563 6352663 -79343091 - Tigger6a DNA MER2_type -514 1083 988 2705 36 0 0 chr15 6352663 6352967 -79342787 - AluY SINE Alu -7 304 1 3841 150 147 107 chr15 6352967 6353907 -79341847 - Tigger6a DNA MER2_type -609 988 1 286 255 7 111 chr15 6353907 6354060 -79341694 + L2 LINE L2 3169 3305 -8 24 0 0 0 chr15 6354288 6354312 -79341442 + AT_rich Low_complexity Low_complexity 1 24 0 1356 120 0 0 chr15 6354312 6354496 -79341258 - AluSg/x SINE Alu -16 294 111 297 212 0 15 chr15 6354667 6354733 -79341021 - L2 LINE L2 -301 2971 2907 578 246 50 17 chr15 6355040 6355219 -79340535 + MER5A DNA MER1_type 3 187 -2 2178 125 0 0 chr15 6355412 6355709 -79340045 - AluSx SINE Alu -15 297 1 358 277 190 39 chr15 6355853 6356163 -79339591 + L1ME LINE L1 5258 5617 -504 320 267 10 10 chr15 6357188 6357289 -79338465 - L1MC4a LINE L1 -1893 5915 5815 2125 114 10 3 chr15 6357325 6357622 -79338132 + AluSx SINE Alu 1 299 -13 272 287 140 15 chr15 6357627 6357763 -79337991 - L1ME3A LINE L1 -30 6140 5988 303 174 96 43 chr15 6357878 6357993 -79337761 - L1MC5 LINE L1 -431 7530 7410 2039 101 0 7 chr15 6357995 6358271 -79337483 - AluSc SINE Alu -2 307 34 260 294 50 102 chr15 6358294 6358592 -79337162 - HAL1b LINE L1 -809 539 277 1897 137 4 14 chr15 6358592 6358895 -79336859 - AluSx SINE Alu 0 308 9 260 294 50 102 chr15 6358895 6359115 -79336639 - HAL1b LINE L1 -1071 277 47 3160 64 52 9 chr15 6359528 6359562 -79336192 - MLT2A1 LTR ERVL -6 438 407 497 89 25 0 chr15 6359562 6359641 -79336113 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 3160 64 52 9 chr15 6359641 6360026 -79335728 - MLT2A1 LTR ERVL -37 407 1 2245 64 0 44 chr15 6360293 6360637 -79335117 - AluY SINE Alu 0 331 1 368 164 15 0 chr15 6361037 6361104 -79334650 - L1MC4a LINE L1 -2035 5773 5706 956 205 252 20 chr15 6361109 6361411 -79334343 + MSTD LTR MaLR 1 372 -24 375 164 44 3 chr15 6361443 6361523 -79334231 + MSTD LTR MaLR 324 396 0 184 256 205 0 chr15 6361824 6361902 -79333852 - L2 LINE L2 -38 3234 3141 471 187 79 50 chr15 6364921 6365060 -79330694 + LTR45B LTR ERV1 342 484 -5 338 183 0 0 chr15 6366224 6366284 -79329470 + L2 LINE L2 3251 3310 -3 813 153 0 0 chr15 6366545 6366663 -79329091 + FLAM_C SINE Alu 1 118 -25 2249 112 7 0 chr15 6366920 6367224 -79328530 - AluSx SINE Alu -6 306 1 2667 180 13 42 chr15 6368492 6368563 -79327191 - MLT2B2 LTR ERVL 0 515 443 1985 119 51 14 chr15 6368563 6368857 -79326897 + AluSx SINE Alu 1 305 -7 2667 180 13 42 chr15 6368857 6369308 -79326446 - MLT2B2 LTR ERVL -72 443 8 2351 97 0 3 chr15 6369912 6370211 -79325543 + AluSg SINE Alu 1 298 -12 521 279 113 22 chr15 6370822 6370881 -79324873 - MIR SINE MIR -6 256 204 2272 104 0 3 chr15 6370881 6371180 -79324574 + AluY SINE Alu 1 298 -13 521 279 113 22 chr15 6371180 6371342 -79324412 - MIR SINE MIR -58 204 15 797 246 123 29 chr15 6371781 6372255 -79323499 - MLT2F LTR ERVL -23 640 98 1077 169 0 0 chr15 6372262 6372434 -79323320 + FRAM SINE Alu 1 172 -4 1171 53 0 0 chr15 6372878 6373011 -79322743 + AluY SINE Alu 1 133 -178 2595 55 3 3 chr15 6373012 6373321 -79322433 + AluY SINE Alu 1 309 -2 2470 187 118 42 chr15 6373330 6373955 -79321799 + L1MB1 LINE L1 5446 6118 -50 1228 102 0 18 chr15 6374056 6374222 -79321532 - AluSq SINE Alu -150 163 1 437 294 37 27 chr15 6375080 6375267 -79320487 - MIR SINE MIR -65 197 9 1705 73 9 18 chr15 6375534 6375752 -79320002 - AluSq SINE Alu -97 216 1 233 233 0 0 chr15 6376027 6376070 -79319684 + (CA)n Simple_repeat Simple_repeat 2 44 0 2604 214 92 42 chr15 6376369 6376586 -79319168 - L1MD2 LINE L1 -3 6750 6545 333 0 0 0 chr15 6376586 6376623 -79319131 + (TG)n Simple_repeat Simple_repeat 2 38 0 2604 214 92 42 chr15 6376623 6377111 -79318643 - L1MD2 LINE L1 -208 6545 5993 2129 128 3 0 chr15 6377111 6377407 -79318347 - AluSx SINE Alu -13 299 3 2604 214 92 42 chr15 6377407 6377552 -79318202 - L1MD2 LINE L1 -760 5993 5857 1682 122 50 4 chr15 6377562 6377824 -79317930 - AluSx SINE Alu -1 311 38 1296 217 97 26 chr15 6377842 6377944 -79317810 - L1MD2 LINE L1 -1794 4746 4653 2344 128 34 0 chr15 6377944 6378296 -79317458 + THE1B LTR MaLR 1 364 0 1296 217 97 26 chr15 6378296 6378576 -79317178 - L1MD2 LINE L1 -1887 4653 4337 558 250 61 0 chr15 6378690 6378886 -79316868 - L1MD2 LINE L1 -3003 3537 3330 4116 167 39 34 chr15 6378917 6378977 -79316777 - L1MB4 LINE L1 -41 6139 6081 2453 84 0 0 chr15 6378977 6379275 -79316479 + AluSc SINE Alu 1 298 -11 4116 167 39 34 chr15 6379275 6380090 -79315664 - L1MB4 LINE L1 -99 6081 5260 * 5356 231 91 76 chr15 6380084 6380467 -79315287 - L1MD2 LINE L1 -3351 3189 2813 2015 152 0 0 chr15 6380467 6380764 -79314990 - AluSx SINE Alu -15 297 1 5356 231 91 76 chr15 6380764 6381549 -79314205 - L1MD2 LINE L1 -3727 2813 2041 2088 133 3 7 chr15 6381549 6381858 -79313896 + AluSx SINE Alu 1 308 -4 5356 231 91 76 chr15 6381858 6382415 -79313339 - L1MD2 LINE L1 -4499 2041 1494 2048 93 22 0 chr15 6382415 6382683 -79313071 - AluSx SINE Alu -25 287 14 5356 231 91 76 chr15 6382683 6384046 -79311708 - L1MD2 LINE L1 -5046 1494 41 1860 132 0 29 chr15 6384214 6384494 -79311260 + AluSq SINE Alu 1 272 -41 2193 95 31 0 chr15 6385393 6385687 -79310067 + AluSx SINE Alu 1 303 -9 2182 152 40 71 chr15 6386157 6386636 -79309118 - MER21A LTR ERV1 -9 922 459 1590 54 32 36 chr15 6386636 6386857 -79308897 - AluY SINE Alu -91 220 1 1185 173 240 0 chr15 6386858 6387112 -79308642 - MER21B LTR ERV1 -548 315 1 259 280 51 42 chr15 6388157 6388275 -79307479 + MLT1H LTR MaLR 433 536 -13 402 264 42 0 chr15 6389402 6389546 -79306208 - MLT2E LTR ERVL -9 619 470 600 227 87 35 chr15 6389626 6389798 -79305956 - MLT2E LTR ERVL -318 310 130 563 245 125 35 chr15 6389963 6390163 -79305591 - MER20 DNA MER1_type -1 218 1 436 213 37 37 chr15 6390172 6390308 -79305446 + Charlie7 DNA MER1_type 2277 2412 -200 980 151 7 0 chr15 6390309 6390455 -79305299 + AluJo SINE Alu 1 147 -165 301 64 0 0 chr15 6391139 6391186 -79304568 + L1MB4 LINE L1 6134 6180 0 7126 225 29 32 chr15 6391232 6391472 -79304282 + L1M4 LINE L1 2964 3203 -2943 2414 100 0 3 chr15 6391472 6391783 -79303971 - AluSx SINE Alu -2 310 1 7126 225 29 32 chr15 6391783 6392090 -79303664 + L1M4 LINE L1 3203 3509 -2637 1604 178 44 17 chr15 6392090 6392419 -79303335 + AluJb SINE Alu 1 312 0 7126 225 29 32 chr15 6392419 6393264 -79302490 + L1M4 LINE L1 3509 4352 -1794 2229 124 0 0 chr15 6393264 6393571 -79302183 + AluSx SINE Alu 1 307 -5 7126 225 29 32 chr15 6393571 6394161 -79301593 + L1M4 LINE L1 4352 4942 -1204 318 244 11 22 chr15 6394176 6394266 -79301488 - L1MC4 LINE L1 -1339 6703 6615 280 71 0 71 chr15 6394269 6394339 -79301415 + (TA)n Simple_repeat Simple_repeat 2 66 0 2196 104 0 3 chr15 6394339 6394626 -79301128 - AluSc SINE Alu -23 286 1 3619 194 74 25 chr15 6394626 6395215 -79300539 + L1MB8 LINE L1 4891 5450 -728 2400 93 3 0 chr15 6395215 6395525 -79300229 + AluY SINE Alu 1 311 0 3619 194 74 25 chr15 6395525 6396150 -79299604 + L1MB8 LINE L1 5450 6168 -10 2230 103 3 28 chr15 6396235 6396598 -79299156 + AluSx SINE Alu 1 355 0 658 197 0 58 chr15 6396642 6396779 -79298975 + FLAM_C SINE Alu 2 130 -3 2230 81 3 11 chr15 6397263 6397573 -79298181 - AluY SINE Alu 0 308 1 1987 214 49 62 chr15 6397870 6398504 -79297250 - MLT1E2 LTR MaLR 0 626 1 279 289 68 55 chr15 6399886 6400121 -79295633 + MER110-int LTR ERV1 3160 3397 -3404 2263 104 16 3 chr15 6400370 6400677 -79295077 + AluSq SINE Alu 1 311 -2 324 70 0 0 chr15 6400764 6400807 -79294947 + (CA)n Simple_repeat Simple_repeat 2 44 0 2238 123 7 0 chr15 6401153 6401499 -79294255 + AluSx SINE Alu 1 348 0 2320 119 0 0 chr15 6402025 6402335 -79293419 + AluSx SINE Alu 1 310 -2 264 135 0 0 chr15 6402405 6402442 -79293312 + AluSg/x SINE Alu 142 178 -122 1392 166 11 42 chr15 6402487 6402752 -79293002 + AluJo SINE Alu 47 303 -9 390 339 49 36 chr15 6402758 6403065 -79292689 + MER110-int LTR ERV1 2426 2736 -1911 6981 195 66 37 chr15 6403133 6404705 -79291049 + MER52A LTR ERV1 136 1753 -2 189 0 0 0 chr15 6404859 6404880 -79290874 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 2110 128 32 35 chr15 6405111 6405487 -79290267 + THE1C LTR MaLR 1 375 0 265 333 9 9 chr15 6406450 6406564 -79289190 + MER70-int LTR ERVL 4552 4665 -358 1614 242 69 10 chr15 6406917 6407440 -79288314 + L1MCc LINE L1 1002 1571 -4851 1985 148 7 0 chr15 6407460 6407758 -79287996 + AluSx SINE Alu 3 302 -10 688 244 21 50 chr15 6407775 6407944 -79287810 + L1MCc LINE L1 2279 2441 -4681 1862 175 0 3 chr15 6407944 6408241 -79287513 - AluSx SINE Alu -16 296 1 688 244 21 50 chr15 6408241 6408309 -79287445 + L1MCc LINE L1 2441 2509 -4613 * 1529 188 39 36 chr15 6408287 6408671 -79287083 + L1ME1 LINE L1 6165 6549 -2288 441 141 81 101 chr15 6408671 6408770 -79286984 - LTR12 LTR ERV1 -132 582 313 1320 155 0 48 chr15 6408770 6409041 -79286713 - AluY SINE Alu -20 291 34 1492 142 60 173 chr15 6409070 6409522 -79286232 - LTR12 LTR ERV1 -313 401 1 941 204 97 94 chr15 6409585 6409772 -79285982 + L1ME1 LINE L1 6574 6759 -202 2417 115 13 31 chr15 6409772 6410154 -79285600 + THE1C LTR MaLR 1 375 0 941 204 97 94 chr15 6410154 6410348 -79285406 + L1ME1 LINE L1 6759 6956 -5 2194 112 0 3 chr15 6410903 6411199 -79284555 + AluY SINE Alu 1 295 -16 574 249 104 37 chr15 6411235 6411476 -79284278 - L1ME3A LINE L1 -99 6071 5815 1135 79 13 26 chr15 6412108 6412260 -79283494 + AluSq/x SINE Alu 1 150 -163 526 95 0 0 chr15 6412261 6412335 -79283419 + Alu SINE Alu 222 295 -17 342 221 75 80 chr15 6414426 6414639 -79281115 + L1ME1 LINE L1 4943 5154 -992 1852 196 101 13 chr15 6414646 6415120 -79280634 + L1ME1 LINE L1 5648 6163 -3 270 81 0 0 chr15 6416239 6416276 -79279478 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 266 248 99 30 chr15 6417559 6417660 -79278094 - MER94 DNA DNA -23 111 4 634 190 224 6 chr15 6418007 6418181 -79277573 + MER20 DNA MER1_type 2 213 -6 2161 93 43 7 chr15 6418685 6418986 -79276768 + AluSx SINE Alu 1 312 0 2104 116 0 17 chr15 6419247 6419541 -79276213 - AluSx SINE Alu -23 289 1 891 194 164 64 chr15 6419649 6419979 -79275775 + MLT1A1 LTR MaLR 3 365 0 1446 180 0 4 chr15 6420196 6420435 -79275319 - MER8 DNA MER2_type 0 239 2 1236 126 0 0 chr15 6420628 6420802 -79274952 - AluSg/x SINE Alu 0 310 137 3640 44 0 0 chr15 6420902 6421337 -79274417 + L1PA5 LINE L1 5716 6150 -4 1369 94 0 0 chr15 6421340 6421510 -79274244 + AluSp SINE Alu 130 299 -14 2285 99 3 10 chr15 6423318 6423621 -79272133 - AluSx SINE Alu -11 301 1 748 279 276 17 chr15 6423656 6424186 -79271568 + L2 LINE L2 2309 2975 -339 1687 225 57 14 chr15 6424224 6424642 -79271112 - MLT1C LTR MaLR -5 462 27 2486 84 0 3 chr15 6424643 6424953 -79270801 - AluY SINE Alu -2 309 1 2427 88 0 13 chr15 6424953 6425261 -79270493 - AluSq SINE Alu -9 304 1 1415 174 33 10 chr15 6425798 6426097 -79269657 + L1MB7 LINE L1 5562 5867 -317 821 238 117 57 chr15 6426097 6426483 -79269271 + LTR48B LTR ERV1 1 409 -213 1304 133 0 10 chr15 6426507 6426702 -79269052 + AluSg/x SINE Alu 119 311 -1 2094 115 21 24 chr15 6426703 6427043 -79268711 + MSTC LTR MaLR 88 426 -2 228 250 32 97 chr15 6428073 6428197 -79267557 - MER69A DNA AcHobo -19 158 43 2585 222 80 43 chr15 6428282 6429049 -79266705 + MER21B LTR ERV1 12 806 -57 2239 122 0 3 chr15 6429448 6429751 -79266003 - AluSx SINE Alu -8 304 3 1238 185 13 21 chr15 6430045 6430283 -79265471 - LTR8 LTR ERV1 0 691 456 3303 128 78 32 chr15 6430291 6430890 -79264864 - MER41B LTR ERV1 -8 627 1 2174 121 61 93 chr15 6430890 6431359 -79264395 - LTR8 LTR ERV1 -232 459 6 2425 84 0 0 chr15 6431724 6432032 -79263722 - AluSg SINE Alu -2 308 1 191 121 15 76 chr15 6432177 6432243 -79263511 + GA-rich Low_complexity Low_complexity 2 63 0 1415 121 4 82 chr15 6432924 6433205 -79262549 + AluJb SINE Alu 34 292 -20 2430 73 3 7 chr15 6433781 6434084 -79261670 + AluSp SINE Alu 1 302 -11 890 126 0 15 chr15 6434084 6434211 -79261543 - FLAM_C SINE Alu -175 127 1 280 243 0 78 chr15 6436150 6436253 -79259501 - MLT1K LTR MaLR -111 477 383 2222 105 0 3 chr15 6436645 6436939 -79258815 + AluSx SINE Alu 1 293 -19 203 237 0 0 chr15 6437068 6437106 -79258648 + G-rich Low_complexity Low_complexity 1 38 0 400 215 56 0 chr15 6437110 6437217 -79258537 - MLT1A2 LTR MaLR -200 174 62 3250 92 18 2 chr15 6437218 6437676 -79258078 - Charlie3 DNA MER1_type -4 2706 2242 2885 102 93 9 chr15 6437670 6438130 -79257624 - Charlie3 DNA MER1_type -2210 500 2 * 336 247 41 10 chr15 6438173 6438270 -79257484 - LTR45B LTR ERV1 -39 450 351 443 191 0 22 chr15 6438393 6438482 -79257272 - MER72 LTR ERV1 -266 456 370 374 149 75 0 chr15 6438673 6438740 -79257014 - MLT1A2 LTR MaLR -302 72 1 350 147 46 67 chr15 6439053 6439162 -79256592 + MER41B LTR ERV1 191 323 -269 * 929 184 150 49 chr15 6439160 6439427 -79256327 + MER66A LTR ERV1 184 477 -1 244 322 51 76 chr15 6439461 6439815 -79255939 - L1ME LINE L1 -410 5711 5367 1948 174 36 0 chr15 6439974 6440308 -79255446 + MER7A DNA MER2_type 2 345 -1 228 159 0 23 chr15 6440362 6440392 -79255362 + (TATG)n Simple_repeat Simple_repeat 2 32 -12 1652 185 14 11 chr15 6440392 6440679 -79255075 - AluJb SINE Alu -24 288 1 228 159 0 23 chr15 6440679 6440692 -79255062 + (TATG)n Simple_repeat Simple_repeat 32 44 0 302 357 24 12 chr15 6440704 6440956 -79254798 - L1ME LINE L1 -1006 5140 4886 286 194 32 54 chr15 6440985 6441078 -79254676 + L1MC4 LINE L1 7864 7954 -88 1077 223 97 19 chr15 6441102 6441421 -79254333 - MER2 DNA MER2_type 0 344 1 2059 96 30 46 chr15 6441483 6441786 -79253968 + AluSx SINE Alu 1 298 -14 248 231 0 0 chr15 6443190 6443242 -79252512 + LTR30 LTR ERV1 1 52 -670 1631 146 16 177 chr15 6443242 6443756 -79251998 + LTR12 LTR ERV1 53 483 -231 227 306 58 50 chr15 6445649 6445770 -79249984 - MIR SINE MIR -43 219 98 236 270 90 0 chr15 6446617 6446702 -79249052 + MIR SINE MIR 32 129 -79 1627 132 14 66 chr15 6446702 6446898 -79248856 - AluJb SINE Alu -3 309 131 2221 112 0 10 chr15 6446898 6447192 -79248562 + AluSq SINE Alu 1 291 -22 1627 132 14 66 chr15 6447192 6447284 -79248470 - AluJb SINE Alu -181 131 36 236 270 90 0 chr15 6447284 6447298 -79248456 + MIR SINE MIR 129 140 -68 311 300 36 0 chr15 6447871 6448011 -79247743 + L1M4 LINE L1 16 160 -6382 389 254 49 60 chr15 6448177 6448362 -79247392 + L1M4 LINE L1 483 665 -5877 225 156 133 0 chr15 6448395 6448440 -79247314 - MER2 DNA MER2_type -28 317 267 1957 161 0 0 chr15 6448440 6448744 -79247010 + AluSx SINE Alu 1 304 -8 1875 126 17 3 chr15 6448750 6449051 -79246703 + L1MA3 LINE L1 6000 6304 -1 1030 187 5 46 chr15 6449057 6449276 -79246478 - MER2 DNA MER2_type -134 211 2 2236 213 79 88 chr15 6449340 6449523 -79246231 + L1M4 LINE L1 724 907 -5739 195 100 0 0 chr15 6449523 6449553 -79246201 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2236 213 79 88 chr15 6449553 6449921 -79245833 + L1M4 LINE L1 907 1277 -5369 1993 128 10 10 chr15 6449921 6450218 -79245536 - AluSx SINE Alu -15 297 1 2236 213 79 88 chr15 6450218 6450965 -79244789 + L1M4 LINE L1 1277 2038 -4608 3208 226 61 13 chr15 6451098 6452204 -79243550 + L1M4 LINE L1 2544 3707 -2937 702 261 125 46 chr15 6452314 6452617 -79243137 + MLT1B LTR MaLR 1 327 -63 260 128 0 0 chr15 6452679 6452718 -79243036 + MLT1B LTR MaLR 335 373 -17 2345 80 7 0 chr15 6452958 6453245 -79242509 - AluSx SINE Alu -23 289 1 900 216 158 18 chr15 6453731 6454004 -79241750 - MER33 DNA MER1_type -2 322 12 2262 119 0 10 chr15 6455224 6455534 -79240220 - AluSg SINE Alu -2 308 2 608 113 66 28 chr15 6455689 6455795 -79239959 + MER46A DNA MER2_type 1 110 -126 361 184 0 0 chr15 6455796 6455872 -79239882 + MER46A DNA MER2_type 158 233 -3 384 211 59 125 chr15 6455892 6455972 -79239782 + MER104 DNA Tc2 35 102 -1796 1944 140 21 0 chr15 6455972 6456257 -79239497 - AluSx SINE Alu -21 291 1 384 211 59 125 chr15 6456257 6456328 -79239426 + MER104 DNA Tc2 102 176 -4 2216 110 13 10 chr15 6457218 6457519 -79238235 + AluSx SINE Alu 1 302 -10 372 303 68 8 chr15 6457519 6457651 -79238103 + MIR SINE MIR 24 163 -99 487 257 33 56 chr15 6458616 6458830 -79236924 + L1ME LINE L1 5366 5574 -590 892 250 111 6 chr15 6458909 6459165 -79236589 + L1M4 LINE L1 4376 4676 -1968 2321 107 7 3 chr15 6459165 6459473 -79236281 + AluSx SINE Alu 1 309 -3 892 250 111 6 chr15 6459473 6459548 -79236206 + L1M4 LINE L1 4676 4742 -1902 2185 122 0 3 chr15 6460673 6460969 -79234785 - AluSx SINE Alu -17 295 1 560 247 80 7 chr15 6461041 6461191 -79234563 - MER58B DNA MER1_type -1 340 180 262 241 115 23 chr15 6463366 6463453 -79232301 - L2 LINE L2 -1 3312 3218 2450 69 3 0 chr15 6463548 6463839 -79231915 - AluY SINE Alu -19 292 1 2466 79 0 3 chr15 6463839 6464142 -79231612 - AluY SINE Alu -9 302 1 466 202 97 24 chr15 6464938 6465062 -79230692 + MLT1E3 LTR MaLR 90 222 -402 282 130 0 0 chr15 6465273 6465319 -79230435 - MLT2F LTR ERVL -2 661 616 282 227 15 15 chr15 6465384 6465450 -79230304 + MIR3 SINE MIR 7 72 -136 23 0 0 0 chr15 6465554 6465577 -79230177 + AT_rich Low_complexity Low_complexity 1 23 0 230 257 121 7 chr15 6466766 6466904 -79228850 + MIR SINE MIR 20 179 -65 180 0 0 0 chr15 6467426 6467446 -79228308 + (A)n Simple_repeat Simple_repeat 1 20 0 2301 109 120 5 chr15 6470490 6470874 -79224880 + MSTA LTR MaLR 1 428 0 7585 128 8 51 chr15 6470874 6472505 -79223249 + MSTA-int LTR MaLR 1 1580 0 2023 137 129 5 chr15 6472505 6472886 -79222868 + MSTA LTR MaLR 1 428 0 1998 113 0 0 chr15 6475448 6475734 -79220020 - AluSx SINE Alu 0 302 17 35 54 0 0 chr15 6476061 6476117 -79219637 + AT_rich Low_complexity Low_complexity 1 56 0 2321 66 7 7 chr15 6476353 6476656 -79219098 - AluY SINE Alu -8 303 1 1901 165 0 13 chr15 6477273 6477589 -79218165 + AluSq SINE Alu 2 313 0 23 0 0 0 chr15 6477767 6477790 -79217964 + AT_rich Low_complexity Low_complexity 1 23 0 2267 80 37 10 chr15 6478060 6478360 -79217394 - AluSp SINE Alu -5 308 1 444 213 213 7 chr15 6478632 6478787 -79216967 - MIR SINE MIR 0 262 76 687 188 43 120 chr15 6478844 6479078 -79216676 + MER20 DNA MER1_type 1 216 -3 2360 91 0 7 chr15 6479713 6480010 -79215744 - AluSx SINE Alu -17 295 1 1903 172 13 0 chr15 6480531 6480839 -79214915 + AluJb SINE Alu 1 312 0 186 43 0 0 chr15 6483575 6483598 -79212156 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1510 186 0 66 chr15 6483969 6484302 -79211452 + AluJo SINE Alu 1 311 -1 2476 56 0 7 chr15 6484668 6484970 -79210784 - AluY SINE Alu -11 300 1 1297 60 72 0 chr15 6485215 6485381 -79210373 - AluY SINE Alu -14 297 120 1034 158 82 0 chr15 6485509 6485705 -79210049 + MER20 DNA MER1_type 8 219 0 1182 168 40 128 chr15 6486640 6486961 -79208793 + AluJo SINE Alu 1 293 -9 447 272 106 57 chr15 6487519 6487884 -79207870 + L1ME LINE L1 4637 5025 -1121 1612 190 7 23 chr15 6488146 6488446 -79207308 + AluJo SINE Alu 4 298 -14 269 308 111 31 chr15 6488466 6488598 -79207156 + L1ME LINE L1 5310 5430 -691 2266 103 0 0 chr15 6488598 6488889 -79206865 + AluSc SINE Alu 1 291 -18 269 308 111 31 chr15 6488889 6489171 -79206583 + L1ME LINE L1 5430 5757 -364 245 280 116 37 chr15 6489531 6489720 -79206034 + L1M4 LINE L1 3661 3864 -2282 1849 160 0 17 chr15 6491262 6491588 -79204166 + AluSx SINE Alu 1 321 0 234 218 13 51 chr15 6492276 6492354 -79203400 - MER20 DNA MER1_type 0 219 145 259 159 0 0 chr15 6492480 6492524 -79203230 + MER96B DNA MER1_type? 191 234 -183 985 147 0 7 chr15 6493355 6493534 -79202220 + AluSg/x SINE Alu 132 309 0 2417 63 0 13 chr15 6493743 6494044 -79201710 + AluY SINE Alu 1 297 -14 1565 188 43 0 chr15 6494507 6494626 -79201128 + AluJo SINE Alu 3 115 -197 234 0 0 0 chr15 6494626 6494652 -79201102 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1565 188 43 0 chr15 6494652 6494814 -79200940 + AluJo SINE Alu 115 296 -16 234 250 42 0 chr15 6496321 6496393 -79199361 + MIR SINE MIR 117 191 -71 35 41 0 0 chr15 6497505 6497554 -79198200 + AT_rich Low_complexity Low_complexity 1 49 0 1048 210 113 0 chr15 6498115 6498406 -79197348 - MER33 DNA MER1_type 0 324 1 1909 149 13 7 chr15 6498601 6498909 -79196845 - AluJb SINE Alu -2 310 1 336 48 0 0 chr15 6498959 6499001 -79196753 + (TG)n Simple_repeat Simple_repeat 1 42 0 725 198 23 109 chr15 6499708 6499877 -79195877 + LTR41 LTR ERVL 482 615 -158 2133 114 3 16 chr15 6499877 6500046 -79195708 - AluSx SINE Alu -10 302 137 2304 65 14 3 chr15 6500046 6500339 -79195415 - AluY SINE Alu -15 296 1 2133 114 3 16 chr15 6500339 6500475 -79195279 - AluSx SINE Alu -175 137 1 725 198 23 109 chr15 6500475 6500608 -79195146 + LTR41 LTR ERVL 615 758 -15 965 190 0 22 chr15 6501953 6502132 -79193622 - AluJb SINE Alu -4 308 134 2335 99 0 3 chr15 6502138 6502440 -79193314 - AluSx SINE Alu -11 301 1 362 312 163 47 chr15 6502859 6503221 -79192533 + L2 LINE L2 2824 3227 -86 2548 59 0 3 chr15 6503238 6503545 -79192209 + AluY SINE Alu 1 306 -5 3378 89 35 8 chr15 6504062 6504570 -79191184 + L1PA14 LINE L1 5640 6161 0 1152 143 107 14 chr15 6504678 6504894 -79190860 - MER46A DNA MER2_type 0 236 1 1622 140 104 3 chr15 6505053 6505360 -79190394 + MER7A DNA MER2_type 11 346 0 244 231 123 0 chr15 6506516 6506581 -79189173 - MER58A DNA MER1_type -32 75 3 292 271 146 0 chr15 6507102 6507198 -79188556 - MIR SINE MIR -125 137 28 2147 121 39 100 chr15 6507855 6508317 -79187437 + Tigger2a DNA MER2_type 1 434 0 4587 123 36 10 chr15 6509367 6510146 -79185608 - L1MA9 LINE L1 -2 6310 5512 2275 101 0 3 chr15 6510415 6510713 -79185041 - AluSx SINE Alu -15 297 1 693 183 111 7 chr15 6510863 6511016 -79184738 + MER58A DNA MER1_type 47 215 -9 677 195 0 23 chr15 6513002 6513130 -79182624 - FLAM_A SINE Alu -8 125 1 2194 108 7 7 chr15 6513716 6514013 -79181741 + AluSg SINE Alu 1 297 -13 280 252 148 9 chr15 6514254 6514369 -79181385 - L2 LINE L2 -1 3312 3182 639 311 153 53 chr15 6514726 6515542 -79180212 - L2 LINE L2 -666 2648 1751 1503 203 0 7 chr15 6515836 6516117 -79179637 + AluJb SINE Alu 1 279 -33 246 32 0 0 chr15 6516117 6516148 -79179606 + (CAA)n Simple_repeat Simple_repeat 2 32 0 251 253 92 23 chr15 6519590 6519677 -79176077 + L1MB8 LINE L1 5562 5654 -467 4653 122 98 61 chr15 6519831 6520392 -79175362 + Tigger3b DNA MER2_type 1 540 -2488 1673 153 51 0 chr15 6520392 6520667 -79175087 + AluSx SINE Alu 1 289 -23 1690 68 135 41 chr15 6520671 6520937 -79174817 + AluY SINE Alu 21 311 0 4653 122 98 61 chr15 6520937 6521396 -79174358 + Tigger3b DNA MER2_type 542 1064 -167 1567 179 57 3 chr15 6521400 6521701 -79174053 - MER7A DNA MER2_type -31 315 1 2498 71 0 0 chr15 6521751 6522048 -79173706 + AluY SINE Alu 1 297 -14 508 264 110 72 chr15 6522624 6522996 -79172758 - MER113 DNA MER1_type? -1 520 123 1904 164 0 10 chr15 6522996 6523294 -79172460 - AluJo SINE Alu -17 295 1 508 264 110 72 chr15 6523294 6523422 -79172332 - MER113 DNA MER1_type? -398 123 1 1561 196 66 17 chr15 6524583 6524991 -79170763 + L1MB8 LINE L1 5741 6168 -10 3815 188 21 7 chr15 6525129 6525852 -79169902 + MER44D DNA MER2_type 1 605 0 390 316 70 41 chr15 6525999 6526556 -79169198 + L1M4 LINE L1 3370 3942 -2204 3195 244 58 24 chr15 6526609 6527673 -79168081 - Charlie1a DNA MER1_type -349 1106 7 22 0 0 0 chr15 6527708 6527730 -79168024 + AT_rich Low_complexity Low_complexity 1 22 0 722 208 19 42 chr15 6527867 6528083 -79167671 + L1MC/D LINE L1 5533 5743 -2065 303 293 46 69 chr15 6528442 6528616 -79167138 + MER5B DNA MER1_type 7 176 -2 231 377 9 9 chr15 6528956 6529070 -79166684 + L2 LINE L2 2948 3061 -211 1730 244 17 28 chr15 6529296 6529768 -79165986 + LTR31 LTR ERV1 115 581 -38 243 0 0 0 chr15 6530169 6530196 -79165558 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3388 144 17 6 chr15 6530290 6530811 -79164943 - MER1A DNA MER1_type 0 527 1 6078 174 32 8 chr15 6531132 6532428 -79163326 + L1PA13 LINE L1 3049 4375 -1771 4763 110 80 25 chr15 6532429 6533218 -79162536 + L1PA13 LINE L1 4646 5390 -773 2273 110 0 0 chr15 6533218 6533518 -79162236 + AluSq SINE Alu 1 300 -13 4763 110 80 25 chr15 6533518 6534185 -79161569 + L1PA13 LINE L1 5390 6152 -11 2136 104 13 13 chr15 6534528 6534826 -79160928 - AluSq SINE Alu -15 298 1 372 284 183 41 chr15 6534826 6535094 -79160660 + HAL1b LINE L1 493 798 -550 514 204 120 7 chr15 6535554 6535696 -79160058 + MER58B DNA MER1_type 181 338 -3 236 319 29 0 chr15 6536024 6536093 -79159661 - MIR3 SINE MIR -10 198 128 * 255 298 220 21 chr15 6536089 6536230 -79159524 + MIR3 SINE MIR 36 204 -4 1708 168 14 20 chr15 6536731 6537023 -79158731 - AluJo SINE Alu -17 295 6 469 121 61 0 chr15 6537336 6537435 -79158319 - L1MB8 LINE L1 -3 6175 6071 1032 221 8 0 chr15 6537440 6537689 -79158065 + L1M4 LINE L1 4907 5157 -989 * 3323 180 78 4 chr15 6537686 6538536 -79157218 - L1MB8 LINE L1 -115 6063 5153 2333 211 104 42 chr15 6538698 6538862 -79156892 + L1ME1 LINE L1 5287 5439 -727 1956 115 11 0 chr15 6538862 6539132 -79156622 - AluSx SINE Alu -38 274 2 2333 211 104 42 chr15 6539132 6539172 -79156582 + L1ME1 LINE L1 5439 5475 -691 1248 171 54 0 chr15 6539172 6539394 -79156360 - MER46A DNA MER2_type 0 236 3 2333 211 104 42 chr15 6539394 6540017 -79155737 + L1ME1 LINE L1 5475 6166 0 21 57 0 0 chr15 6540025 6540060 -79155694 + AT_rich Low_complexity Low_complexity 1 35 0 2412 67 0 7 chr15 6540279 6540577 -79155177 - AluY SINE Alu -15 296 1 21 0 0 0 chr15 6540586 6540607 -79155147 + AT_rich Low_complexity Low_complexity 1 21 0 226 359 31 31 chr15 6540888 6541016 -79154738 - MIR SINE MIR -119 143 16 2712 7 0 0 chr15 6542326 6542623 -79153131 - AluYa5 SINE Alu -14 297 1 1353 67 130 24 chr15 6542645 6542853 -79152901 + MER30 DNA MER1_type 1 230 0 1673 139 139 9 chr15 6544123 6544447 -79151307 + MER47A DNA MER2_type 1 366 0 249 303 0 50 chr15 6545803 6545902 -79149852 + MIR3 SINE MIR 115 208 0 207 0 0 0 chr15 6546392 6546415 -79149339 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 290 110 82 55 chr15 6546515 6546588 -79149166 - MADE1 DNA Mariner 0 80 6 184 306 122 20 chr15 6547456 6547554 -79148200 - L2 LINE L2 -1884 1430 1323 195 171 49 49 chr15 6547560 6547601 -79148153 - L2 LINE L2 -73 3240 3200 500 204 12 126 chr15 6548350 6548605 -79147149 + L1MC4a LINE L1 6044 6269 -1539 24 67 0 0 chr15 6548618 6548663 -79147091 + AT_rich Low_complexity Low_complexity 1 45 0 2149 129 7 0 chr15 6548848 6549151 -79146603 + AluSx SINE Alu 1 305 -7 435 266 38 22 chr15 6549151 6549335 -79146419 + L1ME3A LINE L1 5939 6125 -45 1074 196 28 40 chr15 6549483 6549810 -79145944 + L1MC5 LINE L1 7003 7325 -636 550 173 4 9 chr15 6549810 6549920 -79145834 + MER33 DNA MER1_type 1 100 -88 447 172 69 28 chr15 6549978 6550123 -79145631 + MER33 DNA MER1_type 88 238 -86 239 224 86 9 chr15 6550175 6550291 -79145463 + L1MC5 LINE L1 7344 7468 -493 2132 105 3 7 chr15 6550426 6550722 -79145032 + AluSq SINE Alu 1 295 -18 672 182 0 0 chr15 6550893 6551014 -79144740 - MER46A DNA MER2_type -94 142 22 474 246 41 35 chr15 6551036 6551207 -79144547 + L1MC5 LINE L1 7753 7924 -37 194 293 24 30 chr15 6551592 6551706 -79144048 - L2 LINE L2 -248 3024 2914 426 317 55 35 chr15 6551711 6551910 -79143844 - L2 LINE L2 -2 3311 3109 273 294 66 116 chr15 6551956 6552334 -79143420 - L2 LINE L2 -411 2903 2545 288 0 0 0 chr15 6552722 6552754 -79143000 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 183 80 0 0 chr15 6552785 6552810 -79142944 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 242 215 75 47 chr15 6553112 6553219 -79142535 + L1ME3A LINE L1 6061 6170 0 411 268 87 22 chr15 6553243 6553381 -79142373 + Charlie8 DNA MER1_type 97 243 -2174 489 236 108 32 chr15 6553535 6553692 -79142062 + MIR SINE MIR 78 246 -16 468 207 61 61 chr15 6554309 6554473 -79141281 + L1ME3A LINE L1 5787 5950 -220 448 266 169 0 chr15 6554602 6554756 -79140998 + L2 LINE L2 3127 3306 -7 1802 132 0 59 chr15 6556875 6557179 -79138575 - AluSx SINE Alu -13 299 14 6431 67 5 46 chr15 6557652 6558886 -79136868 + L1PA8 LINE L1 4970 6166 -6 1878 101 36 42 chr15 6559362 6559668 -79136086 - AluSg SINE Alu -6 304 1 1888 111 0 4 chr15 6559671 6559932 -79135822 - AluSx SINE Alu -3 309 50 504 257 138 13 chr15 6560188 6560340 -79135414 + MIR SINE MIR 66 236 -26 266 314 101 6 chr15 6560703 6560933 -79134821 + L1ME LINE L1 5561 5647 -474 184 214 48 0 chr15 6561076 6561118 -79134636 + MIR SINE MIR 198 241 -21 512 312 136 55 chr15 6562450 6563374 -79132380 + L1M2 LINE L1 388 1295 -5554 247 131 0 33 chr15 6563375 6563436 -79132318 + (CGGGG)n Simple_repeat Simple_repeat 1 59 0 1278 204 23 3 chr15 6564734 6565038 -79130716 - L1M4 LINE L1 -970 5176 4867 528 214 58 30 chr15 6565376 6565654 -79130100 + MER33 DNA MER1_type 10 363 0 290 244 25 101 chr15 6565868 6565987 -79129767 + L2 LINE L2 3204 3313 0 203 331 16 33 chr15 6566320 6566441 -79129313 + MER5A DNA MER1_type 3 121 -68 716 179 33 26 chr15 6566521 6566672 -79129082 + MER58B DNA MER1_type 187 338 -3 7898 158 59 34 chr15 6566848 6567481 -79128273 - L1MA3 LINE L1 0 6305 5689 2047 115 10 7 chr15 6567481 6567776 -79127978 - AluSx SINE Alu -16 296 1 7898 158 59 34 chr15 6567776 6567859 -79127895 - L1MA3 LINE L1 -616 5689 5610 2025 89 96 0 chr15 6567859 6568141 -79127613 - AluY SINE Alu -2 309 1 7898 158 59 34 chr15 6568141 6569298 -79126456 - L1MA3 LINE L1 -695 5610 4483 180 0 0 0 chr15 6569298 6569318 -79126436 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 7898 158 59 34 chr15 6569318 6569862 -79125892 - L1MA3 LINE L1 -1822 4483 3791 2295 130 80 8 chr15 6569862 6570261 -79125493 - MSTA LTR MaLR 0 428 1 7898 158 59 34 chr15 6570261 6570556 -79125198 - L1MA3 LINE L1 -2514 3791 3505 4064 218 74 63 chr15 6571229 6571590 -79124164 + L1M4 LINE L1 3041 3396 -2750 1970 134 24 0 chr15 6571590 6571880 -79123874 + AluSx SINE Alu 1 297 -15 207 0 0 0 chr15 6571889 6571912 -79123842 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4064 218 74 63 chr15 6571912 6573596 -79122158 + L1M4 LINE L1 3403 5000 -1146 2045 142 0 3 chr15 6573596 6573898 -79121856 - AluSx SINE Alu -11 301 1 4064 218 74 63 chr15 6573898 6574232 -79121522 + L1M4 LINE L1 5000 5329 -817 1545 94 5 0 chr15 6574335 6574536 -79121218 + AluSq SINE Alu 84 285 -28 324 0 0 0 chr15 6574536 6574572 -79121182 + (CAT)n Simple_repeat Simple_repeat 2 37 0 606 128 53 0 chr15 6574572 6574666 -79121088 + FLAM_C SINE Alu 31 129 -14 22 35 0 0 chr15 6575029 6575058 -79120696 + AT_rich Low_complexity Low_complexity 1 29 0 301 234 13 0 chr15 6576121 6576198 -79119556 + L1MB2 LINE L1 6093 6170 -1 624 250 58 16 chr15 6576854 6577042 -79118712 + MER45C DNA AcHobo 17 212 -741 378 239 110 9 chr15 6577245 6577354 -79118400 + MER45C DNA AcHobo 470 589 -364 1359 168 72 0 chr15 6577639 6577901 -79117853 + MER45B DNA AcHobo 713 993 -47 331 294 155 46 chr15 6578340 6578738 -79117016 - L1MC4a LINE L1 -297 5824 5433 2114 118 3 0 chr15 6578826 6578995 -79116759 - AluSx SINE Alu -14 298 126 180 0 0 0 chr15 6578995 6579015 -79116739 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2114 118 3 0 chr15 6579015 6579142 -79116612 - AluSx SINE Alu -186 126 1 775 171 105 7 chr15 6579195 6579347 -79116407 - L1MD3 LINE L1 -15 7980 7814 195 42 0 0 chr15 6579719 6579743 -79116011 + (A)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr15 6580094 6580129 -79115625 + AT_rich Low_complexity Low_complexity 1 35 0 30 45 0 0 chr15 6580399 6580443 -79115311 + AT_rich Low_complexity Low_complexity 1 44 0 21 82 0 0 chr15 6580559 6580608 -79115146 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr15 6580769 6580791 -79114963 + AT_rich Low_complexity Low_complexity 1 22 0 1072 238 142 114 chr15 6580803 6582039 -79113715 + L1MC5 LINE L1 6637 7906 -55 665 286 172 29 chr15 6582117 6582593 -79113161 + MLT1H LTR MaLR 6 549 0 1981 146 10 3 chr15 6583489 6583784 -79111970 - AluSx SINE Alu -15 297 1 21 57 0 0 chr15 6583931 6583966 -79111788 + AT_rich Low_complexity Low_complexity 1 35 0 2493 50 7 0 chr15 6583966 6584263 -79111491 - AluY SINE Alu -12 299 1 2100 106 7 7 chr15 6584309 6584602 -79111152 - AluSg1 SINE Alu -16 293 1 992 104 0 7 chr15 6585605 6585749 -79110005 + FRAM SINE Alu 20 162 -14 318 67 0 0 chr15 6585969 6586014 -79109740 + (GA)n Simple_repeat Simple_repeat 1 45 0 2251 75 14 0 chr15 6586357 6586651 -79109103 - AluY SINE Alu -13 298 1 1250 176 42 139 chr15 6586721 6587125 -79108629 + MLT1A1 LTR MaLR 1 365 0 2045 94 4 7 chr15 6587385 6587660 -79108094 + AluSp SINE Alu 29 302 -11 4261 204 62 44 chr15 6588179 6588223 -79107531 - L1MD2 LINE L1 -9 6350 6308 2094 158 0 0 chr15 6588223 6588527 -79107227 + AluSx SINE Alu 1 304 -8 4261 204 62 44 chr15 6588527 6588685 -79107069 - L1MD2 LINE L1 -51 6308 6154 251 27 0 27 chr15 6588685 6588722 -79107032 + (TG)n Simple_repeat Simple_repeat 1 36 0 4261 204 62 44 chr15 6588722 6589073 -79106681 - L1MD2 LINE L1 -205 6154 5811 2552 62 0 0 chr15 6589073 6589378 -79106376 - AluY SINE Alu -6 305 1 4261 204 62 44 chr15 6589378 6589440 -79106314 - L1MD2 LINE L1 -548 5811 5752 1728 179 13 19 chr15 6589440 6589753 -79106001 + AluJo SINE Alu 1 311 -1 4261 204 62 44 chr15 6589753 6590442 -79105312 - L1MD2 LINE L1 -607 5752 5022 231 337 33 0 chr15 6590836 6590928 -79104826 - L2 LINE L2 -40 3273 3179 238 113 19 38 chr15 6591780 6591833 -79103921 + CT-rich Low_complexity Low_complexity 1 52 0 3636 147 21 20 chr15 6592166 6592770 -79102984 - MER6A DNA MER2_type 0 605 1 2522 70 3 3 chr15 6593255 6593568 -79102186 - AluSp SINE Alu 0 313 1 518 259 84 93 chr15 6593660 6594089 -79101665 - L2 LINE L2 -70 3243 2819 340 145 4 49 chr15 6594123 6594178 -79101576 - Alu SINE Alu -1 300 258 1834 107 52 0 chr15 6594178 6594448 -79101306 - AluSx SINE Alu -28 284 1 340 145 4 49 chr15 6594448 6594468 -79101286 - Alu SINE Alu -43 258 239 1838 275 104 14 chr15 6594475 6595174 -79100580 - L2 LINE L2 -628 2686 1925 1976 99 10 7 chr15 6595604 6595897 -79099857 + AluSc SINE Alu 1 294 -15 2298 70 0 3 chr15 6596722 6597032 -79098722 + AluY SINE Alu 1 309 0 216 205 0 0 chr15 6597103 6597142 -79098612 - L2 LINE L2 -10 3303 3265 1348 145 9 14 chr15 6597170 6597391 -79098363 - AluJb SINE Alu -3 309 90 2128 201 37 80 chr15 6597393 6597582 -79098172 - L1M4 LINE L1 -2937 3209 3014 2296 97 0 0 chr15 6597582 6597882 -79097872 + AluY SINE Alu 1 300 -11 2128 201 37 80 chr15 6597882 6598497 -79097257 - L1M4 LINE L1 -3132 3014 2439 2364 91 3 0 chr15 6598658 6598956 -79096798 + AluSc SINE Alu 1 299 -10 269 142 124 159 chr15 6599385 6599498 -79096256 + MLT1F1 LTR MaLR 1 109 -458 30 27 0 0 chr15 6599498 6599535 -79096219 + AT_rich Low_complexity Low_complexity 1 37 0 1944 134 10 33 chr15 6599535 6599840 -79095914 + AluSx SINE Alu 1 298 -14 752 179 27 0 chr15 6599840 6599952 -79095802 - AluJo/FLAM SINE Alu -196 116 2 1439 212 42 111 chr15 6599954 6600404 -79095350 + MLT1F1 LTR MaLR 94 507 -60 2313 85 7 19 chr15 6600404 6600711 -79095043 - AluSg SINE Alu -7 303 1 1439 212 42 111 chr15 6600711 6600765 -79094989 + MLT1F1 LTR MaLR 507 563 -4 799 172 0 22 chr15 6600777 6600911 -79094843 + FLAM_C SINE Alu 2 132 -11 915 249 75 31 chr15 6600921 6600932 -79094822 + L1MD2 LINE L1 3151 3160 -2986 2075 154 0 0 chr15 6600932 6601237 -79094517 + AluSx SINE Alu 1 305 -7 915 249 75 31 chr15 6601237 6601638 -79094116 + L1MD2 LINE L1 3160 3581 -2565 * 4627 206 53 31 chr15 6601627 6602704 -79093050 + L1MD2 LINE L1 4588 5711 -648 2301 81 20 0 chr15 6602704 6603001 -79092753 + AluSp SINE Alu 1 303 -10 4627 206 53 31 chr15 6603001 6603635 -79092119 + L1MD2 LINE L1 5711 6329 -30 1014 229 86 67 chr15 6604332 6604778 -79090976 + MLT1C LTR MaLR 1 458 -9 746 107 14 29 chr15 6605477 6605617 -79090137 + L1MA4 LINE L1 6160 6297 -3 2164 108 10 0 chr15 6605651 6605946 -79089808 + AluSx SINE Alu 1 298 -14 2145 139 25 79 chr15 6606055 6606220 -79089534 + L1MB7 LINE L1 5663 5835 -349 618 138 165 18 chr15 6606220 6606329 -79089425 + FLAM_A SINE Alu 1 125 -8 2145 139 25 79 chr15 6606329 6606595 -79089159 + L1MB7 LINE L1 5835 6071 -113 462 216 11 0 chr15 6606678 6606766 -79088988 - MER2 DNA MER2_type 0 345 257 994 69 0 0 chr15 6606766 6606882 -79088872 + AluY SINE Alu 1 116 -195 522 78 0 0 chr15 6606883 6606947 -79088807 + Alu SINE Alu 231 294 -15 1658 165 4 0 chr15 6606949 6607210 -79088544 - MER2 DNA MER2_type -82 263 2 361 78 20 0 chr15 6607406 6607457 -79088297 - MER75 DNA T2_type 0 504 453 2246 100 0 3 chr15 6607847 6608137 -79087617 - AluSq SINE Alu -24 289 1 1840 177 0 7 chr15 6608193 6608493 -79087261 + AluJb SINE Alu 1 298 -14 338 264 0 0 chr15 6608517 6608604 -79087150 - L2 LINE L2 -4 3268 3182 1772 139 7 17 chr15 6608623 6608911 -79086843 - AluJb SINE Alu -17 295 11 703 191 22 15 chr15 6608930 6609066 -79086688 - AluJb SINE Alu -174 138 2 1513 176 3 30 chr15 6610502 6610797 -79084957 - L1MB7 LINE L1 -185 5999 5713 726 212 15 0 chr15 6610800 6610937 -79084817 + Tigger1 DNA MER2_type 1 139 -2279 * 1122 154 32 41 chr15 6610933 6611154 -79084600 + Tigger1 DNA MER2_type 2200 2418 0 2299 158 21 76 chr15 6611154 6611472 -79084282 - L1MB7 LINE L1 -466 5712 5378 997 72 29 22 chr15 6611472 6611610 -79084144 + MER85 DNA T2_type 1 139 0 2299 158 21 76 chr15 6611610 6612168 -79083586 - L1MB7 LINE L1 -800 5378 4903 298 202 0 0 chr15 6612193 6612249 -79083505 - MIR3 SINE MIR -50 158 102 237 65 0 0 chr15 6612709 6612740 -79083014 + (T)n Simple_repeat Simple_repeat 1 31 0 2128 102 0 3 chr15 6612897 6613201 -79082553 + AluSx SINE Alu 3 305 0 282 220 0 0 chr15 6613328 6613387 -79082367 + Charlie8 DNA MER1_type 33 91 -2326 297 140 20 0 chr15 6613471 6613521 -79082233 + Charlie8 DNA MER1_type 1374 1424 -993 1458 92 0 83 chr15 6613994 6614223 -79081531 + AluSg SINE Alu 1 210 -100 309 323 21 0 chr15 6614290 6614383 -79081371 + L2 LINE L2 3153 3247 -25 185 262 82 16 chr15 6615797 6615858 -79079896 - L2 LINE L2 -41 3231 3167 1427 180 20 56 chr15 6617508 6617656 -79078098 + AluJo SINE Alu 1 134 -178 1988 159 0 7 chr15 6617656 6617958 -79077796 + AluJo SINE Alu 1 300 -12 1427 180 20 56 chr15 6617958 6618114 -79077640 + AluJo SINE Alu 134 294 -18 214 317 61 0 chr15 6618394 6618476 -79077278 + L2 LINE L2 3185 3271 -1 309 277 31 23 chr15 6618939 6619069 -79076685 + L1M4 LINE L1 4904 5034 -1112 2200 76 0 96 chr15 6619678 6620022 -79075732 - AluSx SINE Alu -1 311 1 28 29 0 0 chr15 6624554 6624589 -79071165 + AT_rich Low_complexity Low_complexity 1 35 0 2348 96 3 0 chr15 6625444 6625746 -79070008 - AluSg SINE Alu -7 303 1 641 220 100 13 chr15 6625846 6625996 -79069758 - MER3 DNA MER1_type 0 209 47 1551 83 69 14 chr15 6626026 6626120 -79069634 - MER30 DNA MER1_type -1 229 142 2379 94 0 3 chr15 6626120 6626417 -79069337 + AluSx SINE Alu 1 296 -16 1551 83 69 14 chr15 6626417 6626539 -79069215 - MER30 DNA MER1_type -88 142 1 1782 159 20 17 chr15 6627101 6627403 -79068351 - AluJb SINE Alu -9 303 1 2238 76 7 33 chr15 6627410 6627849 -79067905 - AluSg SINE Alu 0 431 1 2247 67 7 3 chr15 6627926 6628232 -79067522 - AluY SINE Alu 0 307 1 2416 74 0 6 chr15 6628725 6629036 -79066718 + AluSc SINE Alu 1 309 0 1342 174 5 5 chr15 6629591 6629810 -79065944 - AluSg/x SINE Alu -9 303 85 6183 142 25 22 chr15 6630157 6631313 -79064441 - L1MA10 LINE L1 -4 6330 5171 259 306 97 15 chr15 6631340 6631474 -79064280 + MIR SINE MIR 10 154 -108 222 62 0 0 chr15 6631817 6631849 -79063905 + (TA)n Simple_repeat Simple_repeat 2 33 0 189 0 0 0 chr15 6633607 6633628 -79062126 + (GAAAA)n Simple_repeat Simple_repeat 5 25 0 22 0 0 0 chr15 6633701 6633723 -79062031 + AT_rich Low_complexity Low_complexity 1 22 0 205 236 164 73 chr15 6634116 6634146 -79061608 - MIR3 SINE MIR -25 183 157 464 321 38 11 chr15 6634146 6634330 -79061424 + MER5A DNA MER1_type 1 189 0 205 236 164 73 chr15 6634330 6634409 -79061345 - MIR3 SINE MIR -51 157 64 27 62 0 0 chr15 6636157 6636205 -79059549 + AT_rich Low_complexity Low_complexity 1 48 0 878 163 14 0 chr15 6636349 6636496 -79059258 + FAM SINE Alu 21 169 -16 399 296 208 26 chr15 6636511 6636963 -79058791 + L1ME LINE L1 4310 4843 -1303 365 79 40 13 chr15 6637125 6637195 -79058559 + (TA)n Simple_repeat Simple_repeat 2 74 0 2197 101 7 3 chr15 6637195 6637483 -79058271 - AluSq SINE Alu -24 289 1 643 209 71 75 chr15 6637708 6637975 -79057779 + L1ME LINE L1 5523 5784 -337 39 60 0 0 chr15 6638052 6638119 -79057635 + AT_rich Low_complexity Low_complexity 1 67 0 196 132 0 57 chr15 6638136 6638189 -79057565 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 211 182 0 0 chr15 6638227 6638260 -79057494 + (CA)n Simple_repeat Simple_repeat 2 34 0 268 309 36 0 chr15 6639493 6639577 -79056177 + LTR67 LTR ERVL 107 193 -364 193 95 0 143 chr15 6641157 6641199 -79054555 + L3b LINE CR1 1540 1575 -8 16546 121 22 11 chr15 6641339 6643730 -79052024 + Tigger1 DNA MER2_type 1 2417 -1 2043 146 0 0 chr15 6644058 6644346 -79051408 + AluSx SINE Alu 1 288 -24 286 125 21 0 chr15 6644397 6644445 -79051309 - MLT1A2 LTR MaLR 0 374 326 5302 198 97 41 chr15 6644446 6645673 -79050081 - MLT1A1-int LTR MaLR -439 1296 1 1808 179 36 30 chr15 6645673 6646012 -79049742 - MLT1A1 LTR MaLR 0 365 29 2352 141 28 19 chr15 6646012 6646373 -79049381 + THE1B LTR MaLR 1 364 0 12594 84 9 9 chr15 6646373 6647954 -79047800 + THE1B-int LTR MaLR 1 1580 0 2437 137 28 14 chr15 6647954 6648313 -79047441 + THE1B LTR MaLR 1 364 0 1808 179 36 30 chr15 6648313 6648334 -79047420 - MLT1A1 LTR MaLR -335 30 1 477 227 100 47 chr15 6648475 6648625 -79047129 - MER46A DNA MER2_type -78 158 1 * 1107 181 60 9 chr15 6648491 6648707 -79047047 + MER46A DNA MER2_type 1 227 -9 205 306 88 31 chr15 6649391 6649551 -79046203 + MIR SINE MIR 20 188 -74 1032 254 155 32 chr15 6649725 6650506 -79045248 - L2 LINE L2 0 3313 2434 291 316 45 82 chr15 6650635 6650879 -79044875 - L2 LINE L2 -13 3259 3025 2346 94 3 0 chr15 6651420 6651718 -79044036 + AluSx SINE Alu 1 299 -13 1687 100 0 0 chr15 6652634 6652854 -79042900 + AluSc SINE Alu 1 220 -89 2535 48 0 0 chr15 6653332 6653624 -79042130 - AluY SINE Alu -19 292 1 671 315 133 0 chr15 6654034 6654336 -79041418 - L2 LINE L2 -509 2805 2464 266 244 13 32 chr15 6654411 6654531 -79041223 + L1ME4a LINE L1 5325 5429 -737 1713 180 103 28 chr15 6654577 6655005 -79040749 + MLT1C LTR MaLR 6 465 -2 785 306 68 16 chr15 6655008 6655315 -79040439 + L1ME4a LINE L1 5484 5806 -315 4414 140 32 29 chr15 6655318 6656069 -79039685 + L1MC1 LINE L1 5570 6322 -11 2165 100 21 0 chr15 6656071 6656350 -79039404 + AluSx SINE Alu 1 285 -27 34 42 0 0 chr15 6656374 6656422 -79039332 + AT_rich Low_complexity Low_complexity 1 48 0 829 100 0 0 chr15 6656455 6656565 -79039189 - AluSg/x SINE Alu -8 304 195 490 189 5 55 chr15 6656681 6656821 -79038933 + L1MC4 LINE L1 7845 8042 0 2376 87 0 0 chr15 6656836 6657134 -79038620 + AluY SINE Alu 1 298 -13 351 258 132 13 chr15 6657148 6657307 -79038447 + L1ME4a LINE L1 5939 6116 -5 471 248 48 28 chr15 6657658 6657803 -79037951 + HAL1 LINE L1 1047 1194 -1313 1122 196 97 33 chr15 6657856 6658187 -79037567 + HAL1 LINE L1 1296 1647 -860 491 261 200 74 chr15 6658208 6658445 -79037309 + MLT1L LTR MaLR 5 211 -404 2148 117 0 19 chr15 6658445 6658581 -79037173 + AluSx SINE Alu 1 138 -174 2491 67 0 10 chr15 6658581 6658895 -79036859 + AluY SINE Alu 1 311 0 2148 117 0 19 chr15 6658895 6659066 -79036688 + AluSx SINE Alu 138 302 -10 491 261 200 74 chr15 6659066 6659287 -79036467 + MLT1L LTR MaLR 211 521 -94 2370 125 149 8 chr15 6661095 6661470 -79034284 - MSTA LTR MaLR 0 428 1 1768 181 54 25 chr15 6661673 6662027 -79033727 - MLT1A1 LTR MaLR 0 365 2 2056 113 41 0 chr15 6662136 6662429 -79033325 + AluSg SINE Alu 1 305 -5 481 181 55 48 chr15 6662440 6662586 -79033168 + L1ME1 LINE L1 6017 6162 -2 210 360 33 7 chr15 6662887 6663037 -79032717 - L2 LINE L2 -474 2840 2687 243 360 11 0 chr15 6663163 6663252 -79032502 + Charlie4 DNA MER1_type 1867 1956 -5 360 152 0 0 chr15 6664557 6664623 -79031131 + (CA)n Simple_repeat Simple_repeat 2 67 0 1960 87 20 0 chr15 6665711 6665965 -79029789 + AluSq SINE Alu 44 302 -11 355 292 179 40 chr15 6667140 6667469 -79028285 + HAL1 LINE L1 91 465 -2042 3348 137 16 2 chr15 6667525 6668030 -79027724 - L1MB3 LINE L1 -11 6172 5661 398 255 0 11 chr15 6668030 6668124 -79027630 + HAL1 LINE L1 811 903 -1604 1794 170 0 13 chr15 6668158 6668469 -79027285 + AluJb SINE Alu 1 307 -5 1199 244 132 9 chr15 6668472 6668927 -79026827 + HAL1 LINE L1 1104 1614 -893 603 221 202 54 chr15 6669085 6669402 -79026352 - L2 LINE L2 0 3313 2950 298 248 112 8 chr15 6669775 6669900 -79025854 - MIR SINE MIR -102 160 23 262 254 30 0 chr15 6670739 6670806 -79024948 + L1MC4a LINE L1 7739 7807 -1 200 278 262 0 chr15 6670833 6671024 -79024730 + L2 LINE L2 664 904 -2410 231 277 61 34 chr15 6671256 6671404 -79024350 - HAL1 LINE L1 -665 1842 1691 311 213 101 77 chr15 6671410 6671528 -79024226 - L1MC5 LINE L1 -36 7925 7800 2164 123 0 19 chr15 6671528 6671845 -79023909 - AluSq SINE Alu 0 313 3 311 213 101 77 chr15 6671845 6671895 -79023859 - L1MC5 LINE L1 -161 7800 7753 779 156 0 0 chr15 6671918 6672027 -79023727 + FLAM_C SINE Alu 18 126 -17 431 310 92 4 chr15 6672789 6673028 -79022726 + L1ME LINE L1 5561 5820 -301 233 329 13 0 chr15 6673036 6673112 -79022642 + L2 LINE L2 1177 1253 -2061 1616 125 101 87 chr15 6673171 6673538 -79022216 + L1MB8 LINE L1 5806 6177 -1 1523 159 34 23 chr15 6673807 6674071 -79021683 - AluJb SINE Alu -45 267 1 514 248 117 5 chr15 6674078 6674284 -79021470 + L1ME4a LINE L1 5713 5941 -180 203 345 0 0 chr15 6675181 6675239 -79020515 + MIR SINE MIR 90 147 -115 284 238 12 0 chr15 6675438 6675518 -79020236 - L1MB8 LINE L1 -2 6176 6096 2058 130 7 7 chr15 6676029 6676330 -79019424 + AluSq SINE Alu 1 301 -12 1908 121 0 0 chr15 6676785 6677041 -79018713 + AluSx SINE Alu 49 304 -8 989 267 48 22 chr15 6677960 6678275 -79017479 + L1ME LINE L1 5372 5694 -476 2555 50 3 0 chr15 6678361 6678661 -79017093 + AluY SINE Alu 1 301 -10 2742 278 129 45 chr15 6678838 6679114 -79016640 + L1M4 LINE L1 2773 3024 -3122 1882 161 0 0 chr15 6679114 6679405 -79016349 + AluSx SINE Alu 1 291 -21 180 0 0 0 chr15 6679409 6679429 -79016325 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2742 278 129 45 chr15 6679429 6680632 -79015122 + L1M4 LINE L1 3026 4126 -2020 2906 122 23 25 chr15 6680632 6681067 -79014687 - Tigger2a DNA MER2_type 0 434 1 2742 278 129 45 chr15 6681067 6681378 -79014376 + L1M4 LINE L1 4126 4409 -1737 4437 77 18 0 chr15 6681378 6681922 -79013832 - MER41A LTR ERV1 0 554 1 2742 278 129 45 chr15 6681922 6682450 -79013304 + L1M4 LINE L1 4409 5295 -851 24 32 0 0 chr15 6682704 6682735 -79013019 + AT_rich Low_complexity Low_complexity 1 31 0 183 329 170 20 chr15 6682891 6683244 -79012510 - L2 LINE L2 -997 2317 1912 23 0 0 0 chr15 6687076 6687099 -79008655 + AT_rich Low_complexity Low_complexity 1 23 0 2052 153 25 25 chr15 6689315 6689680 -79006074 + MLT1A1 LTR MaLR 1 365 0 222 329 114 25 chr15 6692626 6692784 -79002970 - L2 LINE L2 -10 3303 3132 2334 95 3 7 chr15 6693045 6693351 -79002403 + AluSg SINE Alu 1 305 -5 2230 114 0 0 chr15 6693364 6693654 -79002100 + AluSx SINE Alu 1 290 -22 2249 67 3 11 chr15 6693770 6694092 -79001662 - AluY SINE Alu 0 320 1 2535 230 184 22 chr15 6695357 6695474 -79000280 + L1MC4 LINE L1 6484 6581 -1461 294 29 0 0 chr15 6695474 6695509 -79000245 + (CA)n Simple_repeat Simple_repeat 2 36 0 2535 230 184 22 chr15 6695509 6696349 -78999405 + L1MC4 LINE L1 6581 7596 -446 184 270 81 40 chr15 6696423 6696497 -78999257 - L2 LINE L2 0 3313 3237 460 291 49 85 chr15 6697202 6697648 -78998106 + MLT1J LTR MaLR 5 434 -77 2131 104 10 0 chr15 6697686 6697975 -78997779 + AluSc SINE Alu 5 296 -13 252 290 65 19 chr15 6698408 6698515 -78997239 + MLT1K LTR MaLR 457 568 -20 449 203 0 6 chr15 6698612 6698775 -78996979 + (CCA)n Simple_repeat Simple_repeat 3 164 0 2829 190 55 4 chr15 6698879 6699783 -78995971 - L1MC2 LINE L1 -486 5927 4968 2211 95 7 3 chr15 6699784 6700078 -78995676 + AluSg SINE Alu 1 295 -15 1141 157 0 0 chr15 6700104 6700270 -78995484 - AluJb SINE Alu -144 168 3 804 248 5 0 chr15 6700272 6700470 -78995284 - L1MC2 LINE L1 -2404 3811 3613 914 122 0 6 chr15 6700655 6700836 -78994918 + (CCA)n Simple_repeat Simple_repeat 1 180 0 603 206 0 0 chr15 6700866 6701041 -78994713 + (CCA)n Simple_repeat Simple_repeat 3 177 0 312 208 0 0 chr15 6701058 6701154 -78994600 + (CCA)n Simple_repeat Simple_repeat 3 98 0 501 239 8 45 chr15 6701512 6701646 -78994108 + MIR SINE MIR 112 240 -22 2308 115 0 0 chr15 6701800 6702105 -78993649 - AluSx SINE Alu -7 305 1 218 79 0 26 chr15 6703270 6703308 -78992446 + (TAAAAA)n Simple_repeat Simple_repeat 2 38 0 2318 100 0 0 chr15 6703778 6704079 -78991675 - AluSx SINE Alu -11 301 1 29 90 0 0 chr15 6705351 6705429 -78990325 + AT_rich Low_complexity Low_complexity 1 78 0 2381 75 0 3 chr15 6705436 6705730 -78990024 + AluSg SINE Alu 1 293 -17 1554 135 0 12 chr15 6706176 6706421 -78989333 + AluJo SINE Alu 71 312 0 1507 158 29 40 chr15 6707242 6707520 -78988234 + AluJb SINE Alu 9 283 -29 958 248 83 73 chr15 6707936 6708525 -78987229 - L1ME4a LINE L1 -14 6107 5513 372 332 60 11 chr15 6708577 6708842 -78986912 - L1MC2 LINE L1 -3532 2683 2406 260 261 72 29 chr15 6708965 6709103 -78986651 - L1MC2 LINE L1 -4055 2341 2198 264 289 0 12 chr15 6709242 6709325 -78986429 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 2303 95 0 3 chr15 6709623 6709927 -78985827 - AluY SINE Alu -8 303 1 21 0 0 0 chr15 6710715 6710736 -78985018 + AT_rich Low_complexity Low_complexity 1 21 0 1609 179 0 11 chr15 6711010 6711289 -78984465 + AluJo SINE Alu 23 298 -14 1351 13 0 0 chr15 6711969 6712119 -78983635 - AluYb8 SINE Alu -2 316 167 2384 84 0 7 chr15 6713494 6713793 -78981961 + AluSq SINE Alu 1 297 -16 214 258 114 30 chr15 6714010 6714142 -78981612 + MIR SINE MIR 120 262 0 2373 89 0 0 chr15 6714298 6714589 -78981165 - AluSc SINE Alu -18 291 1 506 195 81 16 chr15 6714744 6714867 -78980887 + MLT1C LTR MaLR 64 194 -311 24 32 0 0 chr15 6715006 6715037 -78980717 + AT_rich Low_complexity Low_complexity 1 31 0 712 191 24 154 chr15 6715064 6715310 -78980444 + MLT1C LTR MaLR 170 460 -7 2071 133 0 7 chr15 6715824 6716149 -78979605 - AluSx SINE Alu 0 323 1 1986 111 14 4 chr15 6716860 6717172 -78978582 + AluSq SINE Alu 3 317 0 599 235 33 66 chr15 6717238 6717451 -78978303 - L2 LINE L2 0 3313 3108 2015 95 9 76 chr15 6717656 6717972 -78977782 - AluSx SINE Alu -16 296 2 25 0 0 0 chr15 6717993 6718018 -78977736 + AT_rich Low_complexity Low_complexity 1 25 0 434 292 113 11 chr15 6718042 6718227 -78977527 - MIR SINE MIR -7 255 52 22 0 0 0 chr15 6719148 6719170 -78976584 + GC_rich Low_complexity Low_complexity 1 22 0 4268 169 105 53 chr15 6720104 6720240 -78975514 - Tigger6a DNA MER2_type -514 1083 955 1754 152 3 13 chr15 6720240 6720549 -78975205 + AluJo SINE Alu 3 308 -4 4268 169 105 53 chr15 6720549 6721337 -78974417 - Tigger6a DNA MER2_type -642 955 97 1850 151 0 21 chr15 6721337 6721655 -78974099 - AluJb SINE Alu 0 316 5 4268 169 105 53 chr15 6721655 6721757 -78973997 - Tigger6a DNA MER2_type -1500 97 2 210 119 0 48 chr15 6721763 6721805 -78973949 + (TA)n Simple_repeat Simple_repeat 2 41 0 6912 211 68 40 chr15 6722329 6724505 -78971249 + L1M4 LINE L1 37 2150 -4496 2448 86 0 0 chr15 6724505 6724806 -78970948 + AluY SINE Alu 1 301 -10 6912 211 68 40 chr15 6724806 6724818 -78970936 + L1M4 LINE L1 2150 2160 -4486 1900 155 27 0 chr15 6724818 6724939 -78970815 + AluJo SINE Alu 1 117 -195 315 0 0 0 chr15 6724939 6724974 -78970780 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1900 155 27 0 chr15 6724974 6725149 -78970605 + AluJo SINE Alu 117 305 -7 6912 211 68 40 chr15 6725149 6725456 -78970298 + L1M4 LINE L1 2160 2699 -3947 829 230 45 45 chr15 6725453 6725766 -78969988 + L1M4 LINE L1 3539 3851 -2793 * 844 191 13 0 chr15 6725771 6725923 -78969831 + FRAM SINE Alu 1 40 0 415 209 17 9 chr15 6725923 6726038 -78969716 + GA-rich Low_complexity Low_complexity 4 119 0 349 269 15 8 chr15 6726041 6726175 -78969579 + L1M4 LINE L1 3881 4015 -2629 455 230 0 0 chr15 6726178 6726265 -78969489 + L2 LINE L2 3218 3304 -9 2170 114 0 0 chr15 6726460 6726749 -78969005 - AluSx SINE Alu -23 289 1 231 173 0 0 chr15 6726777 6726829 -78968925 + (CA)n Simple_repeat Simple_repeat 2 53 0 350 225 79 0 chr15 6726829 6726918 -78968836 + MER112 DNA MER1_type 67 162 -98 647 312 50 80 chr15 6726918 6727307 -78968447 + L2 LINE L2 293 663 -2651 2518 53 0 0 chr15 6727307 6727606 -78968148 - AluY SINE Alu -12 299 1 647 312 50 80 chr15 6727606 6727751 -78968003 + L2 LINE L2 663 811 -2503 493 235 69 104 chr15 6727751 6728011 -78967743 - MER102a DNA MER1_type -2 328 78 266 271 110 88 chr15 6728128 6728158 -78967596 + HAL1 LINE L1 149 177 -2330 2481 52 3 13 chr15 6728158 6728464 -78967290 + AluY SINE Alu 1 303 -8 266 271 110 88 chr15 6728464 6728862 -78966892 + HAL1 LINE L1 177 622 -1885 708 255 47 56 chr15 6728906 6729247 -78966507 - HAL1 LINE L1 -335 2172 1835 481 30 30 0 chr15 6729248 6729315 -78966439 + (GA)n Simple_repeat Simple_repeat 2 70 0 234 95 0 48 chr15 6729318 6729360 -78966394 - MLT2C1 LTR ERVL -48 349 310 390 96 41 0 chr15 6729402 6729475 -78966279 + GA-rich Low_complexity Low_complexity 2 77 0 1588 184 34 24 chr15 6729478 6729806 -78965948 - MLT2D LTR ERVL -20 534 55 3444 275 113 44 chr15 6729884 6729985 -78965769 + L1ME3A LINE L1 1868 1961 -4254 2108 124 3 7 chr15 6729985 6730291 -78965463 - AluSq SINE Alu -8 305 1 3444 275 113 44 chr15 6730291 6730526 -78965228 + L1ME3A LINE L1 1961 2178 -4037 2345 95 0 0 chr15 6730526 6730821 -78964933 + AluY SINE Alu 9 303 -8 3444 275 113 44 chr15 6730821 6731911 -78963843 + L1ME3A LINE L1 2178 3192 -3023 501 230 22 65 chr15 6731911 6732050 -78963704 - MER94 DNA DNA 0 134 2 3444 275 113 44 chr15 6732050 6732448 -78963306 + L1ME3A LINE L1 3192 3561 -2654 1579 174 34 31 chr15 6732448 6732741 -78963013 + AluJo SINE Alu 1 294 -18 3444 275 113 44 chr15 6732741 6733361 -78962393 + L1ME3A LINE L1 3561 4137 -2078 3144 176 26 11 chr15 6733361 6733902 -78961852 - MER44D DNA MER2_type -1 604 1 3444 275 113 44 chr15 6733902 6734059 -78961695 + L1ME3A LINE L1 4137 4282 -1933 2281 79 28 0 chr15 6734059 6734350 -78961404 - AluSx SINE Alu -13 299 1 2488 64 0 0 chr15 6734359 6734657 -78961097 - AluY SINE Alu -11 300 3 3444 275 113 44 chr15 6734657 6735222 -78960532 + L1ME3A LINE L1 4289 5341 -874 2132 84 30 7 chr15 6735297 6735594 -78960160 + AluSg SINE Alu 1 304 -6 560 247 124 6 chr15 6735596 6735853 -78959901 + L1ME3A LINE L1 5365 5644 -595 558 262 48 6 chr15 6735862 6736030 -78959724 + LTR41 LTR ERVL 7 181 -592 369 250 47 123 chr15 6736280 6736556 -78959198 + LTR41 LTR ERVL 510 764 -9 861 273 54 24 chr15 6736592 6736926 -78958828 + L1ME3A LINE L1 5693 6036 -203 203 217 196 0 chr15 6737145 6737191 -78958563 - L2 LINE L2 -81 3191 3137 2098 142 0 0 chr15 6737241 6737588 -78958166 - AluJb SINE Alu 0 347 1 1489 243 105 101 chr15 6737651 6738009 -78957745 + L1MEd LINE L1 78 433 -5686 1920 151 0 7 chr15 6738009 6738300 -78957454 + AluSx SINE Alu 24 312 0 1489 243 105 101 chr15 6738300 6738810 -78956944 + L1MEd LINE L1 433 949 -5170 331 360 100 20 chr15 6739745 6739945 -78955809 + L2 LINE L2 3056 3271 -1 1081 211 100 106 chr15 6739989 6740501 -78955253 - MLT1J LTR MaLR 0 511 3 270 310 0 0 chr15 6741156 6741227 -78954527 - L2 LINE L2 -1 3312 3242 2561 60 0 0 chr15 6742336 6742637 -78953117 + AluY SINE Alu 1 301 -10 2069 116 0 0 chr15 6742639 6742924 -78952830 + AluSq SINE Alu 17 301 -12 316 308 122 51 chr15 6742987 6743176 -78952578 - L1ME LINE L1 -508 5654 5443 2289 108 0 3 chr15 6743176 6743482 -78952272 + AluSx SINE Alu 1 305 -7 316 308 122 51 chr15 6743482 6743529 -78952225 - L1ME LINE L1 -719 5443 5401 393 231 23 69 chr15 6743580 6743753 -78952001 - L1ME LINE L1 -874 5272 5108 4849 146 26 43 chr15 6745283 6745378 -78950376 + L1PB4 LINE L1 5254 5349 -954 1881 144 16 19 chr15 6745378 6745691 -78950063 - AluSx SINE Alu 0 312 1 4849 146 26 43 chr15 6745691 6745836 -78949918 + L1PB4 LINE L1 5349 5495 -808 2140 109 0 0 chr15 6745836 6746120 -78949634 - AluSg SINE Alu -26 284 1 4849 146 26 43 chr15 6746120 6746811 -78948943 + L1PB4 LINE L1 5495 6300 -3 2209 111 7 0 chr15 6747023 6747321 -78948433 + AluSx SINE Alu 1 300 -12 209 258 0 41 chr15 6747694 6747791 -78947963 + CT-rich Low_complexity Low_complexity 4 96 0 306 286 85 54 chr15 6747792 6748016 -78947738 - MLT1H-int LTR MaLR -832 539 309 297 278 26 9 chr15 6748024 6748139 -78947615 - MLT1H-int LTR MaLR -1250 121 5 1028 264 117 34 chr15 6748143 6748647 -78947107 - MLT1H LTR MaLR 0 549 4 433 351 50 32 chr15 6748807 6749089 -78946665 - L3 LINE CR1 -78 1499 1213 1484 121 0 5 chr15 6749568 6749775 -78945979 - L1PB1 LINE L1 -2 6149 5944 1973 161 0 19 chr15 6750500 6750817 -78944937 + AluJb SINE Alu 1 311 -1 796 172 11 11 chr15 6750832 6751006 -78944748 + GA-rich Low_complexity Low_complexity 4 177 0 2399 121 121 3 chr15 6751011 6751216 -78944538 + MSTB LTR MaLR 2 181 -245 201 39 0 0 chr15 6751216 6751242 -78944512 + (TC)n Simple_repeat Simple_repeat 1 26 0 2399 121 121 3 chr15 6751242 6751416 -78944338 + MSTB LTR MaLR 181 426 0 702 130 32 24 chr15 6751501 6751624 -78944130 + L1MB4 LINE L1 6057 6180 0 2365 99 0 6 chr15 6751632 6751944 -78943810 - AluSg SINE Alu 0 310 1 1967 122 0 4 chr15 6752929 6753208 -78942546 - AluSx SINE Alu -18 294 17 411 264 145 50 chr15 6753230 6753319 -78942435 - MER5A DNA MER1_type -7 182 103 2532 74 0 0 chr15 6753319 6753629 -78942125 - AluY SINE Alu -1 310 1 411 264 145 50 chr15 6753629 6753698 -78942056 - MER5A DNA MER1_type -86 103 9 293 322 38 2 chr15 6753934 6754044 -78941710 + MER20B DNA MER1_type 86 202 -17 191 250 0 0 chr15 6754112 6754156 -78941598 + L2 LINE L2 774 817 -2497 1653 162 10 43 chr15 6754676 6754978 -78940776 + AluJo SINE Alu 1 292 -20 326 167 30 15 chr15 6757255 6757321 -78938433 - MER58B DNA MER1_type -4 337 271 487 242 12 55 chr15 6759599 6759851 -78935903 + L1MEc LINE L1 2063 2260 -3955 2261 81 3 10 chr15 6759851 6760149 -78935605 - AluSg1 SINE Alu -13 296 1 487 242 12 55 chr15 6760149 6760180 -78935574 + L1MEc LINE L1 2260 2291 -3924 804 133 23 0 chr15 6760180 6760308 -78935446 + AluJb SINE Alu 1 131 -181 267 119 68 8 chr15 6811147 6811265 -78884489 + (TG)n Simple_repeat Simple_repeat 2 126 0 245 143 68 15 chr15 6811279 6811547 -78884207 + (TG)n Simple_repeat Simple_repeat 1 282 0 321 114 60 20 chr15 6811583 6811732 -78884022 + (TG)n Simple_repeat Simple_repeat 1 155 0 1713 155 17 24 chr15 6811914 6812204 -78883550 - AluJb SINE Alu -17 295 8 409 113 141 0 chr15 6812351 6812422 -78883332 - AluJ/FRAM SINE Alu -16 296 216 2042 85 0 0 chr15 6812687 6812934 -78882820 - AluSg SINE Alu -63 247 1 1875 89 0 102 chr15 6816170 6816484 -78879270 - AluSg SINE Alu -28 282 1 2305 74 0 3 chr15 6816665 6816986 -78878768 - AluY SINE Alu 0 320 1 1271 122 5 0 chr15 6816986 6817175 -78878579 + Charlie3 DNA MER1_type 2513 2702 -8 1232 146 5 0 chr15 6817177 6817397 -78878357 - L1MB3 LINE L1 -259 5924 5704 2084 130 0 3 chr15 6817472 6817757 -78877997 - AluSx SINE Alu -28 284 1 3421 203 44 18 chr15 6817757 6818716 -78877038 - L1MB3 LINE L1 -724 5460 4475 2440 86 0 0 chr15 6818967 6819270 -78876484 + AluY SINE Alu 1 303 -8 357 82 0 0 chr15 6822417 6822466 -78873288 + (TG)n Simple_repeat Simple_repeat 1 49 0 6360 17 1 0 chr15 6822798 6823511 -78872243 + L1PA3 LINE L1 5442 6155 0 278 269 64 8 chr15 6825179 6825286 -78870468 - MIR3 SINE MIR -38 170 59 1673 167 7 24 chr15 6825332 6825626 -78870128 - AluJo SINE Alu -23 289 1 2114 190 28 2 chr15 6826458 6826894 -78868860 - L1MB3 LINE L1 -2369 3777 3331 2180 84 7 7 chr15 6826897 6827194 -78868560 - AluY SINE Alu -10 301 5 369 43 0 0 chr15 6827205 6827252 -78868502 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 56 0 0 chr15 6827349 6827385 -78868369 + GC_rich Low_complexity Low_complexity 1 36 0 1438 85 15 5 chr15 6828261 6828460 -78867294 + AluSq SINE Alu 1 201 -112 2018 189 13 30 chr15 6828826 6829223 -78866531 - MLT1B LTR MaLR 0 390 1 420 236 79 21 chr15 6830113 6830253 -78865501 + MER67A LTR ERV1 396 543 0 551 152 29 9 chr15 6830896 6831001 -78864753 - MLT1B LTR MaLR 0 374 268 590 215 55 140 chr15 6831555 6831848 -78863906 - MLT1B LTR MaLR -122 268 1 980 280 151 44 chr15 6831924 6832748 -78863006 + HAL1 LINE L1 957 1868 -639 634 203 36 0 chr15 6832966 6833104 -78862650 + MER5A DNA MER1_type 22 164 -25 222 242 61 53 chr15 6832991 6833123 -78862631 - MER5A DNA MER1_type -35 154 22 * 709 244 23 0 chr15 6833133 6833309 -78862445 + MER58A DNA MER1_type 45 224 0 10792 103 52 17 chr15 6834121 6834329 -78861425 - L1PBa LINE L1 -3752 3110 2911 1802 150 44 7 chr15 6834329 6834622 -78861132 - AluSx SINE Alu -8 304 1 10792 103 52 17 chr15 6834622 6834633 -78861121 - L1PBa LINE L1 -3951 2911 2902 2209 66 27 40 chr15 6834633 6834934 -78860820 - AluY SINE Alu -14 297 1 10792 103 52 17 chr15 6834934 6836977 -78858777 - L1PBa LINE L1 -3960 2902 634 1114 155 26 0 chr15 6836977 6837170 -78858584 - L1PBa LINE L1 -6663 200 3 2046 114 4 0 chr15 6838756 6839028 -78856726 + AluSg SINE Alu 30 302 -8 1056 187 60 60 chr15 6839436 6839719 -78856035 - L1MD2 LINE L1 -2 6357 6075 9747 205 34 13 chr15 6839735 6842079 -78853675 + L1MA9 LINE L1 3011 5403 -743 2400 230 20 52 chr15 6842090 6842762 -78852992 + L1MA9 LINE L1 5543 6190 -122 474 65 0 0 chr15 6842762 6842824 -78852930 + (TA)n Simple_repeat Simple_repeat 1 62 0 2400 230 20 52 chr15 6842824 6842907 -78852847 + L1MA9 LINE L1 6190 6274 -38 22 0 0 0 chr15 6842910 6842932 -78852822 + AT_rich Low_complexity Low_complexity 1 22 0 982 9 0 0 chr15 6844493 6844600 -78851154 + U6 snRNA snRNA 1 107 0 3832 27 0 0 chr15 6844600 6845038 -78850716 + L1PA3 LINE L1 5711 6148 -7 827 90 0 0 chr15 6845547 6845647 -78850107 + AluSq/x SINE Alu 17 116 -197 801 144 8 0 chr15 6845647 6845772 -78849982 + AluSc SINE Alu 166 291 -18 1165 155 5 0 chr15 6845772 6845959 -78849795 + AluSx SINE Alu 121 308 -4 252 299 41 0 chr15 6846057 6846154 -78849600 + MIR SINE MIR 92 192 -70 2457 86 0 13 chr15 6847130 6847445 -78848309 - AluY SINE Alu 0 311 1 1626 71 40 22 chr15 6847730 6847956 -78847798 + MER30 DNA MER1_type 1 230 0 972 155 42 237 chr15 6848047 6848197 -78847557 - L1MD3 LINE L1 -10 7985 7808 622 204 15 8 chr15 6848197 6848329 -78847425 + U8 snRNA snRNA 4 136 0 972 155 42 237 chr15 6848329 6848553 -78847201 - L1MD3 LINE L1 -187 7808 7542 195 42 0 0 chr15 6848553 6848577 -78847177 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2003 110 0 0 chr15 6848578 6848841 -78846913 - AluSg SINE Alu -47 263 1 972 155 42 237 chr15 6848841 6848987 -78846767 - L1MD3 LINE L1 -258 7737 7564 328 279 38 51 chr15 6849459 6849617 -78846137 + L2 LINE L2 3158 3313 0 23 33 0 0 chr15 6849710 6849740 -78846014 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr15 6850504 6850532 -78845222 + AT_rich Low_complexity Low_complexity 1 28 0 2095 119 3 0 chr15 6851913 6852207 -78843547 + AluSq SINE Alu 19 313 0 24 67 0 0 chr15 6852838 6852883 -78842871 + AT_rich Low_complexity Low_complexity 1 45 0 827 150 0 15 chr15 6853188 6853321 -78842433 - FLAM_C SINE Alu -1 132 2 309 263 130 47 chr15 6853642 6853855 -78841899 + MIR SINE MIR 3 225 -37 1857 79 126 14 chr15 6853855 6854133 -78841621 - AluY SINE Alu -2 309 1 406 306 32 24 chr15 6855095 6855343 -78840411 - L1ME LINE L1 -400 5721 5472 241 173 0 0 chr15 6855426 6855478 -78840276 - L1MB4 LINE L1 -12 6168 6117 1770 95 0 9 chr15 6855478 6855709 -78840045 + AluY SINE Alu 68 296 -15 280 261 23 23 chr15 6857117 6857205 -78838549 + MER5C DNA MER1_type 37 124 -200 1424 130 189 53 chr15 6857667 6857911 -78837843 + MER47A DNA MER2_type 1 210 -2113 207 0 0 0 chr15 6857911 6857934 -78837820 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2127 111 3 7 chr15 6857938 6858226 -78837528 - AluSp SINE Alu -26 287 1 1424 130 189 53 chr15 6858226 6858298 -78837456 + MER47A DNA MER2_type 212 366 0 2263 73 38 0 chr15 6859098 6859387 -78836367 - AluY SINE Alu -7 304 5 369 109 0 0 chr15 6859391 6859446 -78836308 + (T)n Simple_repeat Simple_repeat 1 55 0 21 89 0 0 chr15 6859972 6860028 -78835726 + AT_rich Low_complexity Low_complexity 1 56 0 28 0 0 0 chr15 6860305 6860333 -78835421 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr15 6860590 6860635 -78835119 + AT_rich Low_complexity Low_complexity 1 45 0 1399 160 12 78 chr15 6862074 6862288 -78833466 - AluJo SINE Alu -2 310 124 1864 114 28 41 chr15 6862288 6862578 -78833176 + AluSp SINE Alu 2 287 -26 1399 160 12 78 chr15 6862578 6862695 -78833059 - AluJo SINE Alu -188 124 1 1760 135 14 17 chr15 6862729 6863026 -78832728 + AluSp SINE Alu 5 300 -13 550 196 9 0 chr15 6863026 6863138 -78832616 - AluJb SINE Alu -198 114 2 1697 139 23 16 chr15 6863173 6863476 -78832278 + AluSp SINE Alu 5 309 -4 284 136 0 0 chr15 6863476 6863520 -78832234 - AluJb SINE Alu -188 114 71 * 1510 226 91 39 chr15 6863511 6863950 -78831804 + MLT1D LTR MaLR 44 505 0 1767 194 28 33 chr15 6864489 6864885 -78830869 - L1MB2 LINE L1 0 6171 5778 381 43 0 0 chr15 6864885 6864932 -78830822 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 899 168 14 0 chr15 6864932 6865075 -78830679 - AluJb SINE Alu -30 282 138 1636 156 19 16 chr15 6865558 6865866 -78829888 - L1MB7 LINE L1 0 6184 5876 26 30 0 0 chr15 6868897 6868930 -78826824 + AT_rich Low_complexity Low_complexity 1 33 0 517 204 138 13 chr15 6868973 6869125 -78826629 - MIR SINE MIR -64 198 28 2038 109 13 33 chr15 6869278 6869581 -78826173 - AluSx SINE Alu -13 299 3 327 49 0 0 chr15 6870745 6870786 -78824968 + (TG)n Simple_repeat Simple_repeat 2 42 0 251 204 0 0 chr15 6870798 6870847 -78824907 + MIR SINE MIR 184 232 -30 933 249 127 33 chr15 6870877 6871391 -78824363 - HAL1 LINE L1 -877 1630 1069 592 236 126 95 chr15 6871392 6871867 -78823887 - MLT1H1 LTR MaLR 0 555 66 242 239 127 25 chr15 6871934 6872131 -78823623 - HAL1 LINE L1 -1437 1070 854 2264 112 3 3 chr15 6872158 6872461 -78823293 - AluSp SINE Alu -10 303 1 1876 138 10 31 chr15 6872525 6872853 -78822901 + AluJo SINE Alu 1 322 0 346 286 93 65 chr15 6873127 6873417 -78822337 - HAL1 LINE L1 -2167 340 43 902 217 37 28 chr15 6873800 6874017 -78821737 + MER20 DNA MER1_type 1 219 0 2413 63 0 20 chr15 6874147 6874448 -78821306 + AluY SINE Alu 5 299 -12 270 0 0 0 chr15 6874886 6874916 -78820838 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2129 118 7 0 chr15 6874916 6875195 -78820559 - AluY SINE Alu -27 284 1 388 251 99 41 chr15 6877853 6877876 -78817878 + MIR SINE MIR 12 32 -230 2215 99 7 3 chr15 6877876 6878169 -78817585 + AluY SINE Alu 1 294 -17 388 251 99 41 chr15 6878169 6878316 -78817438 + MIR SINE MIR 32 192 -70 271 343 131 0 chr15 6879246 6879383 -78816371 + MIR3 SINE MIR 31 185 -23 323 233 78 26 chr15 6879402 6879518 -78816236 + L2 LINE L2 3146 3267 -5 236 173 58 0 chr15 6880854 6880906 -78814848 + L1MC4a LINE L1 5885 5939 -1869 282 56 0 0 chr15 6880909 6880945 -78814809 + (TG)n Simple_repeat Simple_repeat 2 37 0 482 255 160 25 chr15 6881141 6881341 -78814413 + MIR SINE MIR 26 252 -10 1916 145 0 26 chr15 6883423 6883726 -78812028 + AluSx SINE Alu 3 297 -15 252 238 197 8 chr15 6883743 6883865 -78811889 + MIR SINE MIR 48 192 -70 897 175 0 18 chr15 6884572 6884738 -78811016 + 7SLRNA srpRNA srpRNA 95 257 -63 261 57 0 0 chr15 6885863 6885898 -78809856 + (TGGGGG)n Simple_repeat Simple_repeat 6 40 0 293 215 21 21 chr15 6887978 6888071 -78807683 + L1M4c LINE L1 1132 1224 -5160 * 1773 234 64 32 chr15 6888070 6889187 -78806567 + L1M4c LINE L1 1540 2782 -3600 1035 266 109 39 chr15 6889187 6889606 -78806148 - MLT1C LTR MaLR 0 467 2 2171 133 3 46 chr15 6889870 6890238 -78805516 + MSTA LTR MaLR 1 352 -76 2688 146 37 2 chr15 6890338 6890769 -78804985 - MER7C DNA MER2_type -156 446 1 1136 284 61 50 chr15 6890787 6891245 -78804509 - MER21B LTR ERV1 -396 467 5 360 241 288 4 chr15 6891253 6891489 -78804265 - HAL1 LINE L1 -695 1812 1510 390 213 16 39 chr15 6891590 6891717 -78804037 + CT-rich Low_complexity Low_complexity 3 126 0 703 254 130 52 chr15 6891726 6891856 -78803898 - HAL1 LINE L1 -1542 965 846 337 39 19 19 chr15 6891856 6891908 -78803846 + (TG)n Simple_repeat Simple_repeat 1 52 0 703 254 130 52 chr15 6891908 6892139 -78803615 - HAL1 LINE L1 -1661 846 576 2938 228 52 47 chr15 6892355 6893161 -78802593 + L1M4 LINE L1 5 814 -5728 333 220 11 33 chr15 6893161 6893252 -78802502 + L1M4 LINE L1 737 825 -5717 295 218 23 11 chr15 6893227 6893314 -78802440 + L1M4 LINE L1 727 814 -5728 * 296 164 16 0 chr15 6893312 6893373 -78802381 + L1M4 LINE L1 735 796 -5746 3116 249 64 45 chr15 6893379 6893670 -78802084 + L1M4 LINE L1 727 1011 -5814 2356 88 0 3 chr15 6893670 6893965 -78801789 - AluSc SINE Alu -15 294 1 3116 249 64 45 chr15 6893965 6895417 -78800337 + L1M4 LINE L1 1011 2647 -4178 1472 213 11 0 chr15 6895417 6895690 -78800064 + AluJo SINE Alu 3 278 -34 3116 249 64 45 chr15 6895690 6895952 -78799802 + L1M4 LINE L1 2647 2903 -3922 1226 105 0 0 chr15 6895968 6896130 -78799624 + AluSg/x SINE Alu 143 304 -8 848 227 35 11 chr15 6896131 6896394 -78799360 + L1M4 LINE L1 2871 3135 -3509 469 151 140 26 chr15 6896535 6896711 -78799043 + L1M4 LINE L1 5177 5370 -808 1705 193 0 3 chr15 6896750 6897061 -78798693 + AluJo SINE Alu 1 310 -2 235 218 18 0 chr15 6897063 6897118 -78798636 + L1MB7 LINE L1 6108 6163 -21 22 0 0 0 chr15 6897327 6897349 -78798405 + AT_rich Low_complexity Low_complexity 1 22 0 593 228 54 58 chr15 6897461 6897595 -78798159 - L1ME1 LINE L1 -5 6397 6263 180 0 0 0 chr15 6897595 6897615 -78798139 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 593 228 54 58 chr15 6897615 6897704 -78798050 - L1ME1 LINE L1 -139 6263 6175 * 2185 249 80 26 chr15 6897699 6898061 -78797693 - L1ME1 LINE L1 -816 5566 5225 2585 74 0 3 chr15 6898061 6898373 -78797381 - AluY SINE Alu 0 311 1 2185 249 80 26 chr15 6898373 6898881 -78796873 - L1ME1 LINE L1 -1157 5225 4649 2294 144 76 13 chr15 6898883 6899280 -78796474 + MSTB LTR MaLR 3 424 -2 9541 176 11 18 chr15 6899282 6900943 -78794811 + MSTB-int LTR MaLR 3 1651 0 2401 180 65 0 chr15 6900943 6901343 -78794411 + MSTB LTR MaLR 1 426 0 202 239 15 30 chr15 6901348 6901415 -78794339 + CT-rich Low_complexity Low_complexity 4 69 0 180 111 0 0 chr15 6901423 6901450 -78794304 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 1013 212 14 29 chr15 6901462 6901740 -78794014 - L1ME1 LINE L1 -1755 4627 4354 474 320 32 20 chr15 6902269 6902516 -78793238 - L1M4 LINE L1 -6269 273 24 345 239 122 22 chr15 6902555 6902735 -78793019 + L1MEc LINE L1 1774 1971 -4425 22 35 0 0 chr15 6902783 6902812 -78792942 + AT_rich Low_complexity Low_complexity 1 29 0 372 130 0 0 chr15 6903172 6903241 -78792513 + (TC)n Simple_repeat Simple_repeat 2 70 0 261 0 0 0 chr15 6903242 6903271 -78792483 + (TA)n Simple_repeat Simple_repeat 1 29 0 241 185 62 0 chr15 6903273 6903354 -78792400 - L1ME1 LINE L1 -5504 880 795 271 243 48 0 chr15 6903357 6903460 -78792294 + (TA)n Simple_repeat Simple_repeat 1 108 0 1033 252 82 18 chr15 6903461 6903790 -78791964 - MLT2D LTR ERVL -64 350 1 6110 168 45 37 chr15 6903792 6904018 -78791736 - ERVL-D LTR ERVL -11 5753 5530 2457 80 0 0 chr15 6904018 6904317 -78791437 + AluY SINE Alu 1 299 -12 6110 168 45 37 chr15 6904317 6904434 -78791320 - ERVL-D LTR ERVL -234 5530 5415 2281 125 0 0 chr15 6904434 6904746 -78791008 + AluSx SINE Alu 1 312 0 6110 168 45 37 chr15 6904746 6905570 -78790184 - ERVL-D LTR ERVL -349 5415 4576 4469 262 51 31 chr15 6905678 6905899 -78789855 - L1MEc LINE L1 -2033 4096 3881 2055 100 25 4 chr15 6905899 6906218 -78789536 - AluSq SINE Alu 0 325 1 4469 262 51 31 chr15 6906218 6907871 -78787883 - L1MEc LINE L1 -2248 3881 2183 6347 159 20 24 chr15 6907876 6908883 -78786871 - L1MC1 LINE L1 -1 6592 5590 2476 153 40 26 chr15 6908883 6909309 -78786445 - MSTB1 LTR MaLR 0 432 1 6347 159 20 24 chr15 6909309 6909745 -78786009 - L1MC1 LINE L1 -1003 5590 5154 13387 123 30 11 chr15 6909795 6912570 -78783184 + L1PA10 LINE L1 3373 6163 -5 3616 196 94 43 chr15 6912591 6913720 -78782034 - L1MC1 LINE L1 -3971 2435 1251 301 304 155 26 chr15 6913929 6914123 -78781631 - L1ME LINE L1 -284 5837 5619 1241 144 0 6 chr15 6914123 6914304 -78781450 + AluSx SINE Alu 1 180 -132 2028 196 41 21 chr15 6914364 6914752 -78781002 + MSTD LTR MaLR 1 396 0 2172 115 14 0 chr15 6916104 6916399 -78779355 - AluSq SINE Alu -14 299 1 399 120 22 76 chr15 6916689 6916781 -78778973 + HsTC2 DNA Tc2 1 87 -1811 276 287 66 55 chr15 6917000 6917272 -78778482 - L1MEc LINE L1 -4706 1604 1330 31 26 0 0 chr15 6917275 6917313 -78778441 + AT_rich Low_complexity Low_complexity 1 38 0 2457 73 3 0 chr15 6917358 6917660 -78778094 + AluY SINE Alu 1 303 -8 10263 204 70 18 chr15 6917702 6918414 -78777340 - L1MC3 LINE L1 -39 8164 7490 180 77 0 0 chr15 6918414 6918440 -78777314 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 10263 204 70 18 chr15 6918440 6920364 -78775390 - L1MC3 LINE L1 -713 7490 5396 3342 228 54 81 chr15 6920388 6921983 -78773771 - L1MC3 LINE L1 -4850 1195 1 902 296 103 77 chr15 6922039 6923250 -78772504 - L1MEc LINE L1 -4872 1247 5 28 29 0 0 chr15 6923732 6923767 -78771987 + AT_rich Low_complexity Low_complexity 1 35 0 317 310 16 64 chr15 6925902 6925920 -78769834 - MIR SINE MIR -26 236 219 2323 84 40 0 chr15 6925920 6926218 -78769536 - AluY SINE Alu -1 310 1 317 310 16 64 chr15 6926218 6926386 -78769368 - MIR SINE MIR -43 219 59 1763 231 45 27 chr15 6926543 6927057 -78768697 - Charlie1b DNA MER1_type 0 523 1 378 221 31 24 chr15 6927542 6927669 -78768085 - L1M4 LINE L1 -777 5369 5242 1453 194 65 26 chr15 6928572 6928923 -78766831 + MLT1A1 LTR MaLR 1 365 0 342 0 0 0 chr15 6930143 6930181 -78765573 + (CA)n Simple_repeat Simple_repeat 2 39 0 2099 225 124 37 chr15 6933053 6933393 -78762361 - Charlie2 DNA MER1_type -33 2829 2520 1978 121 0 28 chr15 6933393 6933718 -78762036 - AluSx SINE Alu 0 317 1 2099 225 124 37 chr15 6933718 6934265 -78761489 - Charlie2 DNA MER1_type -342 2520 1864 732 69 0 0 chr15 6934484 6934571 -78761183 + AluSc SINE Alu 83 169 -140 910 235 118 42 chr15 6935511 6935800 -78759954 - MER21B LTR ERV1 -62 801 491 68 42 0 0 chr15 6935800 6935896 -78759858 + AT_rich Low_complexity Low_complexity 1 96 0 382 146 126 215 chr15 6936152 6936399 -78759355 - MER21B LTR ERV1 -627 236 12 230 328 0 0 chr15 6936439 6936497 -78759257 + C-rich Low_complexity Low_complexity 4 61 0 181 264 56 56 chr15 6937241 6937313 -78758441 - MIR SINE MIR -70 138 67 1841 214 16 3 chr15 6938183 6938566 -78757188 - MLT1B LTR MaLR 0 390 3 806 183 154 6 chr15 6938937 6938969 -78756785 + AluJo SINE Alu 86 112 -200 192 77 0 0 chr15 6938969 6938995 -78756759 + (CAA)n Simple_repeat Simple_repeat 2 27 0 806 183 154 6 chr15 6938995 6939137 -78756617 + AluJo SINE Alu 112 286 -26 591 173 0 0 chr15 6939137 6939247 -78756507 + (TA)n Simple_repeat Simple_repeat 1 110 0 367 276 136 67 chr15 6939831 6940309 -78755445 - MLT1H1 LTR MaLR -8 547 37 1018 258 63 3 chr15 6942171 6942473 -78753281 - LTR16C LTR ERVL -22 469 150 2591 148 35 0 chr15 6943069 6943475 -78752279 + MSTC LTR MaLR 9 428 0 253 290 10 40 chr15 6943762 6943862 -78751892 - L2 LINE L2 -1 3271 3175 628 244 45 29 chr15 6944162 6944519 -78751235 + LTR37A LTR ERV1 26 424 -2 182 287 16 57 chr15 6944521 6944643 -78751111 - L2 LINE L2 -379 2934 2818 22 0 0 0 chr15 6944746 6944768 -78750986 + AT_rich Low_complexity Low_complexity 1 22 0 233 192 0 0 chr15 6945258 6945310 -78750444 - MIR SINE MIR -134 128 77 261 0 0 0 chr15 6945535 6945564 -78750190 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 413 263 0 0 chr15 6946767 6946862 -78748892 - MER94 DNA DNA -1 133 39 311 300 9 9 chr15 6947748 6947858 -78747896 - L1M4 LINE L1 -1160 4986 4877 25 0 0 0 chr15 6948078 6948103 -78747651 + AT_rich Low_complexity Low_complexity 1 25 0 27311 103 14 10 chr15 6949063 6953005 -78742749 - L1P LINE L1 -2180 3966 11 406 272 38 46 chr15 6953016 6953255 -78742499 + L1M4 LINE L1 3725 3961 -2185 429 276 31 69 chr15 6953737 6953998 -78741756 + L1M4 LINE L1 4578 4828 -1318 1392 153 25 8 chr15 6954131 6954366 -78741388 + L1PA16 LINE L1 5919 6157 -9 876 153 7 0 chr15 6954374 6954549 -78741205 + FRAM SINE Alu 10 185 0 30 27 0 0 chr15 6956970 6957007 -78738747 + AT_rich Low_complexity Low_complexity 1 37 0 1668 180 3 23 chr15 6957008 6957313 -78738441 - AluJo SINE Alu -11 301 3 245 320 0 13 chr15 6957937 6958012 -78737742 + CT-rich Low_complexity Low_complexity 4 77 0 1643 202 85 50 chr15 6959031 6959120 -78736634 - MER74A LTR ERVL -24 534 450 2220 100 3 3 chr15 6959120 6959409 -78736345 + AluSg SINE Alu 1 289 -21 1643 202 85 50 chr15 6959409 6959835 -78735919 - MER74A LTR ERVL -108 450 1 2367 90 0 7 chr15 6960096 6960396 -78735358 + AluY SINE Alu 1 298 -13 349 326 54 44 chr15 6961980 6962367 -78733387 + L1M4 LINE L1 2133 2523 -3623 1346 201 13 42 chr15 6962629 6962938 -78732816 + MLT1A1 LTR MaLR 1 300 -65 184 338 25 12 chr15 6963650 6963730 -78732024 - MER5A DNA MER1_type -39 150 70 7113 242 78 35 chr15 6964692 6968471 -78727283 - L1MD2 LINE L1 -29 6724 2685 185 0 40 0 chr15 6968478 6968503 -78727251 + (TA)n Simple_repeat Simple_repeat 2 27 0 1616 213 76 52 chr15 6968503 6970415 -78725339 - L1MD2 LINE L1 -4073 2467 59 841 206 44 40 chr15 6970419 6970728 -78725026 - MLT1A2 LTR MaLR -4 405 97 399 286 101 68 chr15 6971461 6971828 -78723926 + L1MEd LINE L1 292 670 -5449 2191 121 3 0 chr15 6972095 6972402 -78723352 - AluSx SINE Alu -4 308 1 392 291 127 28 chr15 6972677 6972890 -78722864 + L1MEd LINE L1 849 1082 -5037 333 252 211 0 chr15 6972901 6973024 -78722730 - MIR SINE MIR 0 262 114 762 241 91 44 chr15 6973184 6973591 -78722163 - LTR37A LTR ERV1 0 426 1 452 294 53 50 chr15 6973605 6974033 -78721721 + L1MEd LINE L1 1213 1690 -800 2330 86 0 23 chr15 6974156 6974458 -78721296 + AluSx SINE Alu 5 299 -13 2687 26 3 3 chr15 6974694 6975005 -78720749 + AluYa5 SINE Alu 1 311 0 300 242 135 68 chr15 6975161 6975546 -78720208 + L1MEd LINE L1 2194 2604 -3525 200 114 29 0 chr15 6975669 6975704 -78720050 + (TG)n Simple_repeat Simple_repeat 1 36 0 629 167 19 0 chr15 6975784 6975892 -78719862 + L1MC/D LINE L1 5599 5708 -625 519 264 121 19 chr15 6975966 6976281 -78719473 + L1MEd LINE L1 3053 3399 -2730 6342 143 21 21 chr15 6976308 6976670 -78719084 - L1MC1 LINE L1 -5 6328 5968 373 22 0 0 chr15 6976670 6976715 -78719039 + (TTTTG)n Simple_repeat Simple_repeat 3 140 0 2280 89 0 0 chr15 6976715 6976997 -78718757 - AluSx SINE Alu -1 326 1 6342 143 21 21 chr15 6976997 6977800 -78717954 - L1MC1 LINE L1 -364 5969 5161 10542 50 6 1 chr15 6977869 6979971 -78715783 - L1PA6 LINE L1 -4 6150 4047 419 179 11 42 chr15 6980107 6980202 -78715552 + MLT1A2 LTR MaLR 14 105 -269 822 237 17 23 chr15 6980210 6980383 -78715371 + MER21B LTR ERV1 12 183 -680 959 222 84 25 chr15 6980704 6980983 -78714771 - L1MB8 LINE L1 0 6178 5884 243 0 0 0 chr15 6981469 6981496 -78714258 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1387 182 28 21 chr15 6981500 6981791 -78713963 - AluJo SINE Alu -19 293 1 201 39 0 0 chr15 6981925 6981951 -78713803 + (CA)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr15 6982873 6982895 -78712859 + AT_rich Low_complexity Low_complexity 1 22 0 411 264 91 8 chr15 6983825 6983946 -78711808 - MIR3 SINE MIR -40 168 38 1832 164 12 84 chr15 6985389 6985803 -78709951 - MLT1B LTR MaLR -4 386 3 945 199 49 29 chr15 6986156 6986402 -78709352 - MLT1A1 LTR MaLR -16 349 99 3147 211 81 39 chr15 6986443 6987210 -78708544 - MER21B LTR ERV1 -53 810 12 419 179 11 42 chr15 6987218 6987313 -78708441 - MLT1A1 LTR MaLR -269 105 14 2127 109 0 13 chr15 6988171 6988473 -78707281 - AluSg SINE Alu -12 298 1 1003 147 0 40 chr15 6989493 6989670 -78706084 + FRAM SINE Alu 1 40 0 319 309 0 0 chr15 6990882 6990966 -78704788 + MIR3 SINE MIR 73 156 -52 479 230 111 15 chr15 6991583 6991718 -78704036 + MER58A DNA MER1_type 1 148 0 225 94 62 0 chr15 6991718 6991750 -78704004 + MER58A DNA MER1_type 191 224 0 887 263 55 15 chr15 6991822 6992285 -78703469 - MER119 DNA MER1_type -1 582 5 209 200 98 14 chr15 6992302 6992371 -78703383 - MIR SINE MIR -69 139 74 204 40 0 0 chr15 6993680 6993705 -78702049 + (TTTTTA)n Simple_repeat Simple_repeat 6 30 0 1445 88 0 16 chr15 6994499 6994693 -78701061 - AluY SINE Alu -47 264 74 209 114 29 0 chr15 6994963 6994998 -78700756 + (TG)n Simple_repeat Simple_repeat 1 36 0 862 301 68 37 chr15 6995549 6996141 -78699613 - L1MC4a LINE L1 -1915 6153 5544 465 332 93 18 chr15 6996734 6996960 -78698794 - L1MC4a LINE L1 -1604 4802 4560 275 317 106 22 chr15 6997003 6997363 -78698391 - L1MC4a LINE L1 -1949 4457 4068 22 0 0 0 chr15 6997660 6997682 -78698072 + AT_rich Low_complexity Low_complexity 1 22 0 312 136 34 0 chr15 6998669 6998728 -78697026 - L1MC4a LINE L1 -2980 3426 3366 1368 171 95 29 chr15 6998745 6998937 -78696817 - L1MB3 LINE L1 -1 6182 5959 2037 131 0 3 chr15 6998937 6999243 -78696511 - AluSx SINE Alu -7 305 1 1368 171 95 29 chr15 6999243 6999366 -78696388 - L1MB3 LINE L1 -224 5959 5846 2001 99 16 59 chr15 6999370 6999693 -78696061 - AluSx SINE Alu -3 309 1 548 333 45 31 chr15 6999707 6999927 -78695827 - L1MC4a LINE L1 -3044 3362 3134 633 125 0 29 chr15 6999927 7000031 -78695723 - HY3 scRNA scRNA 0 101 1 548 333 45 31 chr15 7000031 7000167 -78695587 - L1MC4a LINE L1 -3272 3134 3001 2367 223 149 19 chr15 7000437 7001148 -78694606 - MER21B LTR ERV1 -31 832 40 439 205 13 0 chr15 7001187 7001265 -78694489 - MER21B LTR ERV1 -773 90 12 2163 99 0 0 chr15 7003656 7003949 -78691805 - AluSx SINE Alu -13 299 7 1759 168 36 0 chr15 7003954 7004263 -78691491 + MER44D DNA MER2_type 18 607 -2 2090 156 33 0 chr15 7005075 7005441 -78690313 + MLT1B LTR MaLR 2 379 -11 241 270 101 11 chr15 7005642 7005731 -78690023 - MIR SINE MIR -72 136 40 1076 121 0 0 chr15 7005947 7006104 -78689650 - AluSp SINE Alu -17 296 140 2106 117 0 0 chr15 7006836 7007136 -78688618 + AluSx SINE Alu 1 300 -12 45122 33 4 5 chr15 7008109 7014270 -78681484 + L1PA3 LINE L1 7 6155 0 1620 226 41 13 chr15 7014345 7014810 -78680944 - L1MC4a LINE L1 -5264 1145 668 666 260 166 6 chr15 7014906 7015244 -78680510 - L1MC4a LINE L1 -6009 400 9 2074 205 32 42 chr15 7015732 7015881 -78679873 + MER90 LTR ERV1 6 155 -459 2397 75 0 3 chr15 7015881 7016188 -78679566 + AluY SINE Alu 1 306 -5 2074 205 32 42 chr15 7016188 7016608 -78679146 + MER90 LTR ERV1 155 610 -4 1931 112 49 3 chr15 7017372 7017658 -78678096 - AluSx SINE Alu -13 299 1 230 145 72 58 chr15 7018006 7018075 -78677679 + MER53 DNA DNA 119 188 -1 1662 213 81 29 chr15 7019352 7019832 -78675922 - MLT1D LTR MaLR 0 505 1 203 317 79 67 chr15 7020014 7020178 -78675576 - MIR SINE MIR -6 256 91 184 263 0 92 chr15 7020438 7020514 -78675240 - L3 LINE CR1 -2 1575 1507 * 385 229 35 83 chr15 7020496 7020610 -78675144 - MER5A DNA MER1_type -6 183 75 1675 139 40 7 chr15 7020610 7020926 -78674828 - AluY SINE Alu 0 326 2 385 229 35 83 chr15 7020926 7020954 -78674800 - MER5A DNA MER1_type -114 75 47 1752 118 129 26 chr15 7020997 7021337 -78674417 - THE1C LTR MaLR 0 375 1 1952 88 25 63 chr15 7023098 7023417 -78672337 + AluY SINE Alu 1 307 -4 313 265 131 29 chr15 7024317 7024562 -78671192 + L1MC4a LINE L1 970 1239 -4880 324 233 159 80 chr15 7024661 7024975 -78670779 + L1MC4a LINE L1 2887 3225 -2904 304 271 75 81 chr15 7025041 7025373 -78670381 + L1MC4a LINE L1 3609 3938 -2191 351 253 153 35 chr15 7025645 7025815 -78669939 + L1MC4a LINE L1 4221 4410 -1719 347 252 69 23 chr15 7025939 7026070 -78669684 - MLT1J1 LTR MaLR -167 279 143 1058 262 78 31 chr15 7026119 7026543 -78669211 - MLT1J1 LTR MaLR -2 444 1 348 338 45 7 chr15 7026543 7026697 -78669057 + L1MC4a LINE L1 4406 4565 -1564 7664 36 0 4 chr15 7026705 7027912 -78667842 + L1PA4 LINE L1 4951 6154 -1 748 211 79 152 chr15 7028003 7028228 -78667526 - MLT1A1 LTR MaLR 0 365 180 2189 138 76 15 chr15 7028228 7028569 -78667185 - THE1B LTR MaLR -2 362 1 748 211 79 152 chr15 7028569 7028737 -78667017 - MLT1A1 LTR MaLR -185 180 1 2307 173 38 26 chr15 7028794 7029221 -78666533 - MSTB1 LTR MaLR 0 432 1 1780 170 22 41 chr15 7029329 7029694 -78666060 + L1MB3 LINE L1 5798 6155 -28 21 57 0 0 chr15 7029702 7029737 -78666017 + AT_rich Low_complexity Low_complexity 1 35 0 763 326 110 12 chr15 7030204 7030775 -78664979 + L1MC4a LINE L1 5239 5865 -1926 307 264 8 72 chr15 7030953 7031078 -78664676 - MLT1H LTR MaLR -238 311 195 271 308 54 32 chr15 7032072 7032257 -78663497 + ERVL LTR ERVL 514 702 -5062 781 334 46 13 chr15 7032737 7033146 -78662608 + ERVL LTR ERVL 2644 3111 -2638 2138 114 0 0 chr15 7033175 7033503 -78662251 + AluSg SINE Alu 1 328 0 1200 283 114 27 chr15 7033518 7034388 -78661366 + ERVL LTR ERVL 3229 4216 -1548 486 351 101 4 chr15 7034560 7034808 -78660946 + ERVL LTR ERVL 4769 5040 -724 1683 225 46 38 chr15 7034939 7035112 -78660642 + MLT1C LTR MaLR 3 173 -294 2416 71 7 0 chr15 7035112 7035409 -78660345 + AluY SINE Alu 1 299 -12 1683 225 46 38 chr15 7035409 7035688 -78660066 + MLT1C LTR MaLR 173 459 -8 411 266 0 9 chr15 7035692 7035801 -78659953 + ERVL LTR ERVL 5172 5279 -485 5900 132 20 28 chr15 7035923 7035945 -78659809 + MER49 LTR ERV1 1 22 -901 1843 136 0 74 chr15 7035945 7036268 -78659486 + AluSx SINE Alu 1 299 -13 5900 132 20 28 chr15 7036268 7037175 -78658579 + MER49 LTR ERV1 22 923 0 576 191 18 12 chr15 7038135 7038303 -78657451 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 2275 115 3 0 chr15 7039606 7039911 -78655843 - AluSq SINE Alu -5 308 3 2262 104 0 7 chr15 7039922 7040230 -78655524 - AluY SINE Alu -5 306 1 21955 195 46 6 chr15 7041526 7045695 -78650059 - ERVL LTR ERVL -788 4976 550 3304 252 53 26 chr15 7045833 7047076 -78648678 + L1MC2 LINE L1 2626 3902 -2244 2000 143 181 8 chr15 7047076 7047441 -78648313 + MSTA LTR MaLR 1 428 0 9905 132 12 85 chr15 7047443 7049145 -78646609 + MSTA-int LTR MaLR 3 1580 0 403 113 238 0 chr15 7049145 7049225 -78646529 + MSTA LTR MaLR 1 99 -329 985 145 134 0 chr15 7049227 7049406 -78646348 + MSTA LTR MaLR 226 428 0 1294 253 6 10 chr15 7049406 7049718 -78646036 + L1MC2 LINE L1 3898 4208 -1938 1402 247 118 34 chr15 7049721 7049838 -78645916 - MLT1D LTR MaLR 0 505 399 2356 151 28 13 chr15 7049838 7050228 -78645526 + MSTD LTR MaLR 1 396 0 1402 247 118 34 chr15 7050228 7050576 -78645178 - MLT1D LTR MaLR -106 399 1 865 263 23 7 chr15 7050580 7050880 -78644874 + L1MC2 LINE L1 4211 4515 -1631 1043 327 86 22 chr15 7050895 7051587 -78644167 + L1MA9 LINE L1 106 770 -5185 423 245 71 71 chr15 7051652 7051807 -78643947 + L1MA9 LINE L1 635 789 -5166 11728 197 21 28 chr15 7051808 7054122 -78641632 + L1MA9 LINE L1 2544 4851 -1349 2176 99 0 38 chr15 7054122 7054436 -78641318 + AluSp SINE Alu 1 302 -11 11728 197 21 28 chr15 7054436 7055262 -78640492 + L1MA9 LINE L1 4851 5681 -519 306 160 20 120 chr15 7055288 7055388 -78640366 - L1MC4 LINE L1 -1339 6703 6614 301 233 35 23 chr15 7055325 7055411 -78640343 + L1MC4 LINE L1 6615 6701 -1341 * 2759 163 27 17 chr15 7055428 7055951 -78639803 + L1MA9 LINE L1 5673 6200 0 2951 206 73 10 chr15 7055955 7056946 -78638808 + L1MC2 LINE L1 4980 6034 -310 2795 98 40 10 chr15 7056947 7057347 -78638407 - L1MA2 LINE L1 0 6304 5893 796 171 76 0 chr15 7057382 7057540 -78638214 + L1MC3 LINE L1 7118 7287 -498 1453 213 53 36 chr15 7057543 7057767 -78637987 + L1MC3 LINE L1 7364 7600 -185 2397 75 3 0 chr15 7057767 7058061 -78637693 + AluSp SINE Alu 1 295 -18 1453 213 53 36 chr15 7058061 7058249 -78637505 + L1MC3 LINE L1 7600 7783 -2 240 244 134 12 chr15 7058295 7058377 -78637377 - LTR67 LTR ERVL -367 190 99 1010 230 8 28 chr15 7058779 7059027 -78636727 - LTR53 LTR ERVL -88 431 189 293 266 25 0 chr15 7060916 7060995 -78634759 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 189 215 25 13 chr15 7061007 7061086 -78634668 + (TA)n Simple_repeat Simple_repeat 2 81 0 2649 29 7 3 chr15 7061123 7061430 -78634324 - AluY SINE Alu -3 308 1 212 359 26 0 chr15 7063486 7063564 -78632190 - L2 LINE L2 -553 2761 2682 2508 198 29 2 chr15 7064235 7064711 -78631043 - L1MB3 LINE L1 -2 6181 5693 397 343 18 24 chr15 7064897 7065066 -78630688 + MIR SINE MIR 88 255 -7 1527 150 108 119 chr15 7065404 7065683 -78630071 + MLT1C LTR MaLR 1 274 -193 2823 148 14 5 chr15 7065683 7066102 -78629652 - MSTB LTR MaLR 0 426 4 1527 150 108 119 chr15 7066102 7066294 -78629460 + MLT1C LTR MaLR 274 467 0 2120 121 3 7 chr15 7067267 7067565 -78628189 - AluSx SINE Alu -13 299 3 2554 44 0 0 chr15 7067911 7068207 -78627547 - AluY SINE Alu -14 297 2 24 32 0 0 chr15 7068442 7068473 -78627281 + AT_rich Low_complexity Low_complexity 1 31 0 7476 143 26 13 chr15 7069090 7070303 -78625451 - Tigger3b DNA MER2_type -3 1228 1 2208 114 13 0 chr15 7070523 7070951 -78624803 + AluSx SINE Alu 1 432 0 1096 47 0 0 chr15 7070986 7071113 -78624641 - L1PA2 LINE L1 -2 6153 6027 2185 78 0 31 chr15 7071397 7071718 -78624036 - AluY SINE Alu 0 311 1 2613 42 0 3 chr15 7072016 7072328 -78623426 - AluY SINE Alu 0 311 1 240 218 26 39 chr15 7072558 7072636 -78623118 + MIR SINE MIR 168 244 -18 618 300 91 72 chr15 7072752 7073513 -78622241 - L1MC4 LINE L1 -136 7906 7132 4521 210 63 38 chr15 7073791 7075372 -78620382 - L1MD2 LINE L1 -14 6345 4741 2601 122 29 67 chr15 7075404 7075854 -78619900 + Tigger2a DNA MER2_type 1 433 -1 1583 181 59 25 chr15 7075861 7076182 -78619572 + MER2 DNA MER2_type 1 332 -13 349 181 194 0 chr15 7076188 7076260 -78619494 + MER21B LTR ERV1 11 96 -767 3110 231 46 10 chr15 7076260 7077159 -78618595 - L1MD2 LINE L1 -2200 3946 3016 1674 251 117 27 chr15 7077132 7078451 -78617303 - L1MEc LINE L1 -2525 3690 1747 * 304 205 111 0 chr15 7078483 7078600 -78617154 - L1MEc LINE L1 -4636 1620 1450 2364 95 3 13 chr15 7078604 7078919 -78616835 - AluSp SINE Alu -1 312 1 1025 145 0 7 chr15 7078921 7079073 -78616681 - FRAM SINE Alu -5 171 21 692 197 8 0 chr15 7079313 7079440 -78616314 - FLAM_C SINE Alu -3 130 3 846 270 48 28 chr15 7079503 7079896 -78615858 - L1MEc LINE L1 -5638 758 358 230 226 10 78 chr15 7079942 7080044 -78615710 - L1MEc LINE L1 -6013 383 289 3017 130 35 0 chr15 7080095 7080604 -78615150 - Tigger1 DNA MER2_type -420 1998 1472 24 32 0 0 chr15 7080991 7081022 -78614732 + AT_rich Low_complexity Low_complexity 1 31 0 1132 257 117 45 chr15 7081933 7082559 -78613195 + HAL1 LINE L1 1813 2483 -24 2109 136 0 13 chr15 7082729 7083045 -78612709 - AluSx SINE Alu 0 312 1 270 0 0 0 chr15 7084596 7084626 -78611128 + (T)n Simple_repeat Simple_repeat 1 30 0 239 238 113 96 chr15 7084937 7085219 -78610535 + L1MC5 LINE L1 6695 6981 -980 1924 141 0 0 chr15 7085298 7085575 -78610179 + AluSx SINE Alu 32 308 -4 619 277 104 6 chr15 7087356 7087709 -78608045 + MER57A LTR ERV1 41 403 0 21 0 0 0 chr15 7087977 7087998 -78607756 + AT_rich Low_complexity Low_complexity 1 21 0 417 299 0 0 chr15 7088303 7088450 -78607304 + L1ME3 LINE L1 5043 5189 -957 2545 62 0 0 chr15 7088568 7088873 -78606881 - AluY SINE Alu -6 305 1 1310 196 103 56 chr15 7088876 7089254 -78606500 + MSTD LTR MaLR 1 396 0 1618 246 53 45 chr15 7089266 7089999 -78605755 + L1ME3 LINE L1 5255 5993 -169 218 321 55 28 chr15 7090742 7090851 -78604903 - L3 LINE CR1 -696 881 770 1839 155 12 75 chr15 7091547 7091827 -78603927 - L1MA4 LINE L1 -4 6296 6051 2350 92 0 0 chr15 7091827 7092122 -78603632 - AluSc SINE Alu -14 295 1 1839 155 12 75 chr15 7092122 7092267 -78603487 - L1MA4 LINE L1 -249 6051 5898 1271 142 11 0 chr15 7092594 7092784 -78602970 + AluSx SINE Alu 1 192 -120 41625 39 5 1 chr15 7092784 7098887 -78596867 + L1PA3 LINE L1 17 6139 -16 888 157 0 0 chr15 7098895 7099029 -78596725 + AluSg/x SINE Alu 162 295 -17 531 282 85 56 chr15 7099270 7099683 -78596071 + L1MD3 LINE L1 790 1187 -5018 907 259 5 0 chr15 7099689 7099901 -78595853 - MER20 DNA MER1_type -6 213 1 2237 110 0 0 chr15 7099995 7100286 -78595468 + AluSg SINE Alu 1 291 -19 497 279 65 30 chr15 7100288 7101228 -78594526 + L1MD3 LINE L1 1258 2264 -4132 5805 185 22 16 chr15 7101716 7102969 -78592785 + L1MC1 LINE L1 24 1284 -5142 2027 141 9 15 chr15 7102969 7103310 -78592444 + MER1B DNA MER1_type 1 339 0 7656 209 42 77 chr15 7103314 7105873 -78589881 + L1MC1 LINE L1 1281 3927 -2686 855 154 0 0 chr15 7105873 7106003 -78589751 + AluSq/x SINE Alu 9 138 -174 7656 209 42 77 chr15 7106003 7108758 -78586996 + L1MC1 LINE L1 3927 6611 -2 4543 233 56 82 chr15 7109069 7111444 -78584310 - L1M4 LINE L1 -1095 5051 2739 408 287 0 0 chr15 7111529 7111679 -78584075 + L1MD3 LINE L1 4288 4437 -1778 2606 234 30 74 chr15 7111733 7112318 -78583436 - L1MDb LINE L1 -4918 1488 879 189 0 0 0 chr15 7112318 7112339 -78583415 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2173 94 4 0 chr15 7112341 7112617 -78583137 - AluSx SINE Alu -26 286 10 2606 234 30 74 chr15 7112617 7113041 -78582713 - L1MDb LINE L1 -5528 878 536 356 245 20 0 chr15 7113027 7113125 -78582629 + L1MD3 LINE L1 5633 5732 -501 * 687 237 46 92 chr15 7113140 7113777 -78581977 + L1MD3 LINE L1 5814 6479 -1375 1461 163 87 24 chr15 7113777 7114066 -78581688 + AluJo SINE Alu 1 307 -5 687 237 46 92 chr15 7114066 7114401 -78581353 + L1MD3 LINE L1 6479 6828 -1026 2773 3 0 0 chr15 7114401 7114699 -78581055 - AluYa5 SINE Alu -13 298 1 687 237 46 92 chr15 7114699 7114952 -78580802 + L1MD3 LINE L1 6828 6839 -1015 2626 63 8 11 chr15 7114952 7115318 -78580436 + L1PA8 LINE L1 5805 6169 -3 687 237 46 92 chr15 7115318 7115620 -78580134 + L1MD3 LINE L1 6839 7153 -701 2928 152 45 7 chr15 7115629 7116187 -78579567 + L1MA8 LINE L1 5708 6286 -5 2471 266 44 15 chr15 7116202 7117989 -78577765 + L1MEc LINE L1 1053 3052 -3374 262 326 86 31 chr15 7117985 7118335 -78577419 + L1MC5 LINE L1 7138 7506 -455 * 1449 135 4 13 chr15 7118450 7118680 -78577074 + AluSg/x SINE Alu 85 312 0 194 362 40 7 chr15 7118830 7118979 -78576775 + L2 LINE L2 1480 1633 -1681 1032 300 71 44 chr15 7118994 7119917 -78575837 + L2 LINE L2 2368 3313 0 207 176 0 0 chr15 7120558 7120592 -78575162 + GA-rich Low_complexity Low_complexity 3 36 0 769 98 22 44 chr15 7120592 7120775 -78574979 + (GGA)n Simple_repeat Simple_repeat 2 180 0 2444 59 10 7 chr15 7121800 7122107 -78573647 - AluY SINE Alu -3 308 1 194 238 38 100 chr15 7123398 7123478 -78572276 - MIR SINE MIR -111 151 77 591 257 11 29 chr15 7123774 7123949 -78571805 + MER5B DNA MER1_type 2 173 -5 287 256 88 40 chr15 7123981 7124106 -78571648 + MER5B DNA MER1_type 17 147 -31 230 98 24 0 chr15 7124224 7124265 -78571489 + MLT1K LTR MaLR 524 565 -23 411 226 11 0 chr15 7124275 7124368 -78571386 - MER81 DNA DNA -5 109 16 2510 66 0 0 chr15 7124498 7124800 -78570954 - AluY SINE Alu -9 302 1 233 328 161 10 chr15 7125611 7125803 -78569951 + MIR SINE MIR 36 256 -6 2034 103 38 14 chr15 7126293 7126583 -78569171 + AluSx SINE Alu 1 297 -15 361 214 0 36 chr15 7126657 7126797 -78568957 + CT-rich Low_complexity Low_complexity 4 138 0 277 322 85 22 chr15 7127082 7127548 -78568206 - L1MC/D LINE L1 -429 5733 5257 311 339 90 44 chr15 7127610 7128065 -78567689 - L1MC/D LINE L1 -989 5157 4682 624 263 112 10 chr15 7128502 7128814 -78566940 + HAL1 LINE L1 1007 1350 -1157 321 306 99 46 chr15 7128939 7129263 -78566491 + HAL1 LINE L1 1532 1872 -635 1345 146 26 15 chr15 7129437 7129705 -78566049 + L1MA4 LINE L1 6027 6297 -3 308 267 39 36 chr15 7129706 7130048 -78565706 + L1M4 LINE L1 3386 3723 -2423 424 300 58 27 chr15 7130317 7130540 -78565214 + L1M4 LINE L1 4231 4460 -1686 523 183 16 16 chr15 7130567 7130693 -78565061 - L1MD1 LINE L1 0 6242 6117 3120 178 19 17 chr15 7130694 7131336 -78564418 - L1MD2 LINE L1 -183 6176 5534 618 135 0 0 chr15 7131659 7131755 -78563999 - MSTB LTR MaLR 0 426 331 291 323 13 77 chr15 7133283 7133438 -78562316 + MIR3 SINE MIR 1 145 -63 465 175 58 10 chr15 7133500 7133603 -78562151 - MIR SINE MIR -70 192 85 403 276 125 117 chr15 7135958 7136363 -78559391 + L1M2 LINE L1 527 897 -5952 231 36 0 0 chr15 7136363 7136391 -78559363 + (CCCCCG)n Simple_repeat Simple_repeat 2 29 0 403 276 125 117 chr15 7136391 7136723 -78559031 + L1M2 LINE L1 897 1225 -5624 263 378 27 0 chr15 7138239 7138350 -78557404 + MIR SINE MIR 33 146 -62 249 57 0 0 chr15 7138423 7138458 -78557296 + (A)n Simple_repeat Simple_repeat 1 35 0 278 309 65 30 chr15 7138569 7138737 -78557017 + L1MEd LINE L1 283 456 -5663 2038 117 3 0 chr15 7139058 7139378 -78556376 + AluSx SINE Alu 1 321 0 306 244 49 0 chr15 7139416 7139498 -78556256 - MLT1J2 LTR MaLR -11 439 354 1763 266 85 9 chr15 7139662 7140542 -78555212 - L1M4 LINE L1 -2345 3801 2855 1906 262 105 41 chr15 7140585 7141990 -78553764 - L1ME LINE L1 -586 5972 4438 1985 178 58 9 chr15 7141990 7142435 -78553319 - MLT1C LTR MaLR 0 467 1 1906 262 105 41 chr15 7142435 7142678 -78553076 - L1ME LINE L1 -2120 4438 4212 422 265 42 52 chr15 7143282 7143569 -78552185 - L1ME LINE L1 -2361 4179 3896 304 259 112 9 chr15 7143636 7143752 -78552002 - L1ME LINE L1 -5326 1214 1087 256 265 117 12 chr15 7143877 7144039 -78551715 - L1ME LINE L1 -5448 1095 917 431 318 73 67 chr15 7144549 7144876 -78550878 - L1ME LINE L1 -6190 350 22 1907 138 10 3 chr15 7144896 7145193 -78550561 - AluSx SINE Alu -13 299 1 320 239 58 71 chr15 7145461 7145616 -78550138 - L1ME3 LINE L1 -47 6115 5963 573 247 101 86 chr15 7145761 7145971 -78549783 - L1MC5 LINE L1 -522 7439 7234 2302 113 3 0 chr15 7145971 7146273 -78549481 - AluSq SINE Alu -10 303 1 573 247 101 86 chr15 7146273 7146527 -78549227 - L1MC5 LINE L1 -727 7234 6968 436 280 127 34 chr15 7146683 7146951 -78548803 + LTR16B LTR ERVL 172 464 0 539 217 14 140 chr15 7146958 7147244 -78548510 - L1MC5 LINE L1 -1002 6959 6710 233 243 73 22 chr15 7147569 7147705 -78548049 - HAL1b LINE L1 -556 792 650 234 286 94 28 chr15 7147733 7147946 -78547808 - HAL1b LINE L1 -749 599 373 2604 65 0 0 chr15 7148355 7148663 -78547091 - AluY SINE Alu -3 308 1 1561 264 130 14 chr15 7148966 7149558 -78546196 + MLT2F LTR ERVL 1 661 -2 1790 169 41 39 chr15 7149916 7150465 -78545289 - MLT2A2 LTR ERVL 0 554 1 684 265 132 71 chr15 7150467 7150792 -78544962 - MER45C DNA AcHobo -2 951 607 661 268 96 18 chr15 7150763 7150983 -78544771 - MER45C DNA AcHobo -671 282 46 * 618 324 101 16 chr15 7151273 7151707 -78544047 - HAL1b LINE L1 -817 1598 72 919 202 163 28 chr15 7151998 7152280 -78543474 - L1MDa LINE L1 -6194 346 27 304 312 83 38 chr15 7153035 7153192 -78542562 - L1MC4a LINE L1 -401 7407 7244 412 220 85 14 chr15 7153213 7153354 -78542400 - L1MC5 LINE L1 -735 7226 7076 548 266 152 47 chr15 7153402 7153831 -78541923 + LTR33 LTR ERVL 34 507 -14 3189 161 22 20 chr15 7153859 7154499 -78541255 - L1MA4 LINE L1 0 6300 5660 2222 118 0 0 chr15 7154500 7154804 -78540950 - AluSc SINE Alu -5 304 1 226 338 61 9 chr15 7154945 7155158 -78540596 - L1MEd LINE L1 -5285 834 611 516 184 10 0 chr15 7155374 7155472 -78540282 - AluJ/FLAM SINE Alu -213 99 1 279 0 0 0 chr15 7155663 7155694 -78540060 + (TG)n Simple_repeat Simple_repeat 2 32 0 266 269 37 15 chr15 7155820 7155954 -78539800 - L1M4 LINE L1 -1040 5106 4970 577 247 60 32 chr15 7155983 7156234 -78539520 - L1MC5 LINE L1 -1093 6868 6611 983 234 82 30 chr15 7156568 7156932 -78538822 - L1MC5 LINE L1 -2036 5772 5390 345 164 0 0 chr15 7156933 7156994 -78538760 + HERVL LTR ERVL 516 576 -5078 12657 194 43 45 chr15 7156996 7159908 -78535846 + HERVL LTR ERVL 1299 4204 -1450 820 159 7 0 chr15 7159909 7160047 -78535707 + HERVL LTR ERVL 4362 4500 -1264 299 169 323 40 chr15 7160404 7160528 -78535226 + L1M4 LINE L1 4497 4655 -1491 238 215 41 33 chr15 7160618 7160739 -78535015 + L1M LINE L1 5284 5405 -757 505 299 59 21 chr15 7161099 7161710 -78534044 + L1M4 LINE L1 2855 3488 -2658 297 340 7 0 chr15 7162151 7162295 -78533459 + L1M4 LINE L1 4015 4159 -1987 8458 28 4 0 chr15 7162310 7163373 -78532381 - L1P LINE L1 -798 5348 4282 1512 33 0 0 chr15 7163373 7163552 -78532202 + L1PA4 LINE L1 5976 6155 0 327 264 35 62 chr15 7163591 7163735 -78532019 + L1M4 LINE L1 4219 4358 -1788 3356 191 50 14 chr15 7163738 7164825 -78530929 - L1MCb LINE L1 -4516 2124 825 636 222 5 97 chr15 7164823 7165030 -78530724 - L1MCb LINE L1 -6024 540 353 * 4598 221 50 28 chr15 7165035 7166589 -78529165 + L1 LINE L1 2257 3844 -2302 4646 181 35 2 chr15 7166689 7167705 -78528049 + L1 LINE L1 4105 5154 -992 303 238 0 0 chr15 7167706 7167790 -78527964 - L1M4 LINE L1 -2663 3483 3400 1434 177 76 12 chr15 7167790 7168118 -78527636 - MER92B LTR ERV1 -228 408 60 2302 189 13 13 chr15 7168118 7168590 -78527164 - L1PA16 LINE L1 -1 6165 5694 2276 181 21 210 chr15 7168590 7169087 -78526667 + L1 LINE L1 3448 3883 -2263 1258 185 14 0 chr15 7169087 7169298 -78526456 + AluJo SINE Alu 84 297 -15 2276 181 21 210 chr15 7169298 7169668 -78526086 + L1 LINE L1 3883 4321 -1825 348 175 16 0 chr15 7169673 7169736 -78526018 - MER92B LTR ERV1 -570 66 3 344 294 50 1 chr15 7169759 7169901 -78525853 + L1 LINE L1 4873 5023 -1123 291 264 0 0 chr15 7169903 7169975 -78525779 + L1MEd LINE L1 11 82 -6037 1296 175 30 17 chr15 7170031 7170265 -78525489 - MER8 DNA MER2_type -1 238 2 2496 53 0 31 chr15 7170630 7170948 -78524806 - AluY SINE Alu -3 308 1 4205 115 10 30 chr15 7170970 7171647 -78524107 - L1PA16 LINE L1 -9 6157 5494 2650 175 15 0 chr15 7171660 7172208 -78523546 - L1PA16 LINE L1 -743 5403 4848 923 237 124 25 chr15 7172223 7172699 -78523055 - L1MEc LINE L1 -2680 3964 3442 596 246 73 51 chr15 7172693 7173223 -78522531 - L1MEc LINE L1 -3792 2852 2362 * 865 211 74 0 chr15 7173509 7173751 -78522003 - L1MEc LINE L1 -4856 1790 1531 1309 245 64 18 chr15 7173775 7174290 -78521464 - L1MEc LINE L1 -5085 1457 919 864 237 129 47 chr15 7174587 7174950 -78520804 - MSTD LTR MaLR -2 394 2 26 50 0 0 chr15 7175011 7175051 -78520703 + AT_rich Low_complexity Low_complexity 1 40 0 205 276 92 61 chr15 7176016 7176114 -78519640 - MIR SINE MIR -146 116 16 183 321 0 0 chr15 7176404 7176460 -78519294 + MIR3 SINE MIR 112 167 -41 2946 139 79 18 chr15 7177451 7178019 -78517735 + LTR26 LTR ERV1 1 603 0 39 0 0 0 chr15 7178857 7178896 -78516858 + GC_rich Low_complexity Low_complexity 1 39 0 262 231 19 0 chr15 7179026 7179078 -78516676 - MER31B LTR ERV1 -395 71 19 418 286 56 56 chr15 7179083 7179261 -78516493 + LTR16A1 LTR ERVL 280 457 0 250 270 70 20 chr15 7179502 7179602 -78516152 + ERVL LTR ERVL 2477 2581 -3183 640 195 70 0 chr15 7179603 7179731 -78516023 - L1MC1 LINE L1 0 6333 6197 * 1286 164 36 49 chr15 7179729 7180034 -78515720 - L1MDa LINE L1 -4249 2291 1991 2120 194 48 22 chr15 7180035 7180397 -78515357 + MSTB LTR MaLR 1 377 -49 1896 121 90 36 chr15 7180397 7180753 -78515001 - THE1C LTR MaLR 0 375 1 2120 194 48 22 chr15 7180753 7180803 -78514951 + MSTB LTR MaLR 377 424 -2 9423 163 22 18 chr15 7180803 7181781 -78513973 + MSTB-int LTR MaLR 1 992 -659 2001 136 10 13 chr15 7181781 7182083 -78513671 + AluSg SINE Alu 1 301 -9 9423 163 22 18 chr15 7182083 7182747 -78513007 + MSTB-int LTR MaLR 992 1651 0 2336 151 64 10 chr15 7182747 7183151 -78512603 + MSTB LTR MaLR 1 426 0 6401 225 84 44 chr15 7183152 7183516 -78512238 - L1MDa LINE L1 -4547 1993 1645 2255 169 46 7 chr15 7183516 7183931 -78511823 + MSTB1 LTR MaLR 2 432 0 6401 225 84 44 chr15 7183931 7184356 -78511398 - L1MDa LINE L1 -4895 1645 1238 2256 117 0 3 chr15 7184356 7184654 -78511100 - AluSx SINE Alu -15 297 1 6401 225 84 44 chr15 7184654 7185528 -78510226 - L1MDa LINE L1 -5302 1238 242 195 100 0 0 chr15 7185528 7185558 -78510196 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6401 225 84 44 chr15 7185558 7185795 -78509959 - L1MDa LINE L1 -6298 242 16 299 140 0 0 chr15 7186187 7186237 -78509517 - MLT2B1 LTR ERVL -2 518 469 901 250 5 20 chr15 7186304 7186500 -78509254 - MLT2B1 LTR ERVL -63 457 265 1462 287 81 20 chr15 7186641 7187763 -78507991 + L1ME3A LINE L1 4930 6166 -2 270 0 0 0 chr15 7188130 7188160 -78507594 + (TTG)n Simple_repeat Simple_repeat 2 31 0 24 77 0 0 chr15 7188233 7188285 -78507469 + AT_rich Low_complexity Low_complexity 1 52 0 1031 301 106 21 chr15 7188536 7189036 -78506718 + MLT1G1 LTR MaLR 1 595 0 2179 242 73 9 chr15 7190296 7190460 -78505294 + L1MDa LINE L1 2333 2485 -4055 471 17 0 0 chr15 7190460 7190518 -78505236 + L1PA4 LINE L1 6095 6152 -3 2179 242 73 9 chr15 7190518 7191324 -78504430 + L1MDa LINE L1 2485 3374 -3166 * 2209 230 67 73 chr15 7191317 7191564 -78504190 + L1MDa LINE L1 36 283 -6257 189 0 0 0 chr15 7191564 7191585 -78504169 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2209 230 67 73 chr15 7191585 7192262 -78503492 + L1MDa LINE L1 283 1204 -5336 1809 222 93 39 chr15 7192279 7192734 -78503020 + L1MDa LINE L1 3646 4154 -2386 2570 57 0 0 chr15 7192734 7193033 -78502721 + AluY SINE Alu 1 299 -12 1809 222 93 39 chr15 7193033 7193274 -78502480 + L1MDa LINE L1 4154 4380 -2160 207 363 19 25 chr15 7193319 7193476 -78502278 - MIR SINE MIR -73 189 34 200 132 0 53 chr15 7194322 7194360 -78501394 + L2 LINE L2 3262 3297 -16 1396 166 29 4 chr15 7194372 7194613 -78501141 - MLT1A1 LTR MaLR -1 364 118 265 151 57 25 chr15 7198757 7198916 -78496838 + (CTGTG)n Simple_repeat Simple_repeat 1 164 0 191 36 36 0 chr15 7201527 7201555 -78494199 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2212 88 7 29 chr15 7204443 7204749 -78491005 - AluSx SINE Alu -13 299 1 2385 74 0 10 chr15 7205141 7205438 -78490316 + AluY SINE Alu 1 294 -17 1560 142 40 4 chr15 7205551 7205804 -78489950 + MSTB1 LTR MaLR 167 428 -4 1896 192 16 0 chr15 7205815 7206228 -78489526 - MLT2B1 LTR ERVL -50 465 1 736 193 66 6 chr15 7207559 7207740 -78488014 - L1MD3 LINE L1 -14 7981 7790 180 0 0 0 chr15 7207968 7207988 -78487766 + (TG)n Simple_repeat Simple_repeat 2 21 0 1310 255 35 19 chr15 7209094 7209521 -78486233 + L1MC4a LINE L1 5508 5941 -1867 208 281 152 22 chr15 7209736 7209960 -78485794 + L2 LINE L2 2804 3056 -257 1527 210 28 62 chr15 7210536 7210936 -78484818 - MLT1B LTR MaLR -4 386 1 1799 233 89 100 chr15 7210937 7211820 -78483934 - MLT1B-int LTR MaLR -1 1370 497 2120 121 121 26 chr15 7211820 7212112 -78483642 - Tigger1 DNA MER2_type 0 2418 2079 2233 110 7 3 chr15 7212112 7212420 -78483334 - AluSg SINE Alu 0 310 2 2120 121 121 26 chr15 7212420 7212514 -78483240 - Tigger1 DNA MER2_type -339 2079 1995 2146 141 0 6 chr15 7213036 7213348 -78482406 - AluSg SINE Alu 0 310 1 484 273 18 0 chr15 7213589 7213699 -78482055 - MER81 DNA DNA 0 114 3 207 0 0 0 chr15 7213877 7213900 -78481854 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3609 76 41 6 chr15 7214464 7214948 -78480806 - MER41A LTR ERV1 -53 501 1 530 267 40 65 chr15 7216043 7216290 -78479464 + MER46C DNA MER2_type 2 242 -96 1742 52 0 19 chr15 7217382 7217594 -78478160 - AluY SINE Alu -103 208 1 435 232 71 54 chr15 7217600 7217824 -78477930 + L1MC5 LINE L1 7685 7912 -49 407 272 44 0 chr15 7219169 7219305 -78476449 - Charlie1 DNA MER1_type 0 2761 2620 * 559 207 112 95 chr15 7219287 7219519 -78476235 - Charlie1 DNA MER1_type -2521 240 5 317 237 85 25 chr15 7219803 7219921 -78475833 - MLT1I LTR MaLR -244 165 41 2402 75 7 0 chr15 7219928 7220220 -78475534 - AluY SINE Alu -9 302 9 1914 124 71 0 chr15 7220578 7220860 -78474894 - AluSx SINE Alu -10 302 1 236 295 9 62 chr15 7220944 7221056 -78474698 + MIR SINE MIR 136 241 -21 259 219 68 0 chr15 7222039 7222112 -78473642 + L1MEc LINE L1 1129 1206 -5217 * 357 242 10 20 chr15 7222111 7222210 -78473544 + L1MEc LINE L1 2677 2774 -4348 4031 257 60 15 chr15 7222231 7223657 -78472097 + L1MD2 LINE L1 3636 5126 -1815 3870 111 7 32 chr15 7223657 7224252 -78471502 - LTR12 LTR ERV1 -134 580 1 5077 208 45 32 chr15 7224253 7226244 -78469510 + L1MD2 LINE L1 5123 7145 -9 1462 215 9 25 chr15 7226263 7226588 -78469166 + L1MC1 LINE L1 6009 6328 -5 515 278 68 12 chr15 7226595 7226982 -78468772 + L1MEc LINE L1 2772 3145 -3796 319 201 36 65 chr15 7227045 7227153 -78468601 - L1M4b LINE L1 -5283 1263 1151 453 267 37 21 chr15 7227169 7227360 -78468394 - L1M4b LINE L1 -6335 207 14 1714 185 13 3 chr15 7227744 7228042 -78467712 + AluJo SINE Alu 1 301 -11 1692 124 31 99 chr15 7228101 7228423 -78467331 + AluSx SINE Alu 1 300 -12 21 57 0 0 chr15 7228899 7228934 -78466820 + AT_rich Low_complexity Low_complexity 1 35 0 322 209 50 97 chr15 7229079 7229288 -78466466 + L1MCc LINE L1 12 519 -5903 667 229 91 47 chr15 7229778 7230097 -78465657 + L1MCc LINE L1 1665 1997 -4944 1076 270 14 0 chr15 7230503 7230781 -78464973 - MLT1-int LTR MaLR -770 601 320 611 64 0 0 chr15 7230781 7230859 -78464895 - AluY SINE Alu -16 295 218 843 261 32 16 chr15 7230861 7231110 -78464644 - MLT1-int LTR MaLR -1118 253 1 1720 175 3 3 chr15 7231114 7231423 -78464331 - AluJb SINE Alu -1 311 3 195 184 0 0 chr15 7232103 7232141 -78463613 + (CA)n Simple_repeat Simple_repeat 1 38 0 215 240 30 20 chr15 7233582 7233682 -78462072 + (TA)n Simple_repeat Simple_repeat 1 101 0 2371 141 27 3 chr15 7233701 7234076 -78461678 - Tigger2 DNA MER2_type -1 2717 2334 7855 22 1 0 chr15 7234143 7235768 -78459986 + L1PA3 LINE L1 4530 6155 0 1672 141 3 21 chr15 7235909 7236193 -78459561 - L1PA16 LINE L1 0 6166 5888 211 282 0 73 chr15 7236542 7236666 -78459088 + L2 LINE L2 3195 3309 -4 21 0 0 0 chr15 7236993 7237014 -78458740 + AT_rich Low_complexity Low_complexity 1 21 0 506 200 78 9 chr15 7237685 7237800 -78457954 - MIR SINE MIR -103 159 37 1313 211 42 7 chr15 7238092 7238377 -78457377 + MLT1F LTR MaLR 243 537 -5 180 355 0 0 chr15 7238453 7238515 -78457239 + L2 LINE L2 3252 3313 0 266 270 0 0 chr15 7238550 7238613 -78457141 - L2 LINE L2 -5 3308 3246 309 318 85 23 chr15 7238664 7238840 -78456914 - LTR16C LTR ERVL -218 273 87 2325 83 0 3 chr15 7239074 7239386 -78456368 + AluSq SINE Alu 1 311 -2 1350 224 55 22 chr15 7239852 7240214 -78455540 + MLT1A2 LTR MaLR 1 374 0 2324 91 0 0 chr15 7240578 7240886 -78454868 - AluY SINE Alu -3 308 1 216 229 0 29 chr15 7241298 7241368 -78454386 + T-rich Low_complexity Low_complexity 2 69 0 1527 173 41 77 chr15 7244133 7244185 -78451569 - MLT1B LTR MaLR -16 374 322 2067 107 4 0 chr15 7244185 7244504 -78451250 + AluSq SINE Alu 1 320 0 1527 173 41 77 chr15 7244504 7244838 -78450916 - MLT1B LTR MaLR -68 322 1 392 298 55 34 chr15 7244927 7245131 -78450623 + MIR SINE MIR 11 219 -43 186 43 0 0 chr15 7245507 7245530 -78450224 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1153 133 87 18 chr15 7245618 7245836 -78449918 - THE1C LTR MaLR 0 375 143 2596 217 96 51 chr15 7295836 7296596 -78399158 - L1M4 LINE L1 -846 5300 4507 241 324 10 0 chr15 7296593 7296695 -78399059 + HAL1 LINE L1 1506 1608 -899 * 468 316 210 14 chr15 7296706 7297292 -78398462 - L2 LINE L2 -1480 1834 1134 2025 119 24 0 chr15 7297342 7297636 -78398118 + AluSx SINE Alu 1 301 -11 325 302 148 20 chr15 7297824 7297973 -78397781 - MER5B DNA MER1_type -1 177 10 1546 78 59 4 chr15 7298491 7298520 -78397234 + L1M4c LINE L1 1447 1473 -4909 6904 65 4 0 chr15 7298520 7299978 -78395776 - L1PA5 LINE L1 0 6154 4722 1546 78 59 4 chr15 7299978 7300176 -78395578 + L1M4c LINE L1 1473 2172 -4210 186 143 79 16 chr15 7301251 7301377 -78394377 + (TA)n Simple_repeat Simple_repeat 1 134 0 35 24 0 0 chr15 7301384 7301426 -78394328 + AT_rich Low_complexity Low_complexity 1 42 0 34 42 0 0 chr15 7301478 7301526 -78394228 + AT_rich Low_complexity Low_complexity 1 48 0 186 303 96 11 chr15 7302054 7302232 -78393522 - L2 LINE L2 -195 3077 2885 318 236 36 86 chr15 7302324 7302404 -78393350 - L2 LINE L2 -528 2786 2714 2189 107 17 0 chr15 7302404 7302704 -78393050 - AluSq SINE Alu -8 305 1 318 236 36 86 chr15 7302704 7302763 -78392991 - L2 LINE L2 -600 2714 2654 802 273 98 52 chr15 7302964 7303640 -78392114 - L1ME3A LINE L1 -1 6163 5423 2196 117 16 7 chr15 7304888 7305016 -78390738 + AluSx SINE Alu 1 126 -186 216 0 0 0 chr15 7305016 7305040 -78390714 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2196 117 16 7 chr15 7305040 7305220 -78390534 + AluSx SINE Alu 126 312 0 1434 206 133 69 chr15 7306593 7307126 -78388628 + L1ME3A LINE L1 5598 6164 -6 227 79 26 0 chr15 7308692 7308730 -78387024 + (TA)n Simple_repeat Simple_repeat 1 39 0 256 247 188 0 chr15 7308734 7308819 -78386935 - MIR SINE MIR -71 191 91 522 0 0 0 chr15 7309388 7309446 -78386308 + (TG)n Simple_repeat Simple_repeat 2 59 0 2479 64 0 3 chr15 7310338 7310634 -78385120 - AluY SINE Alu -16 295 1 396 267 9 26 chr15 7310848 7310964 -78384790 + CT-rich Low_complexity Low_complexity 4 117 0 270 153 0 0 chr15 7310992 7311051 -78384703 + (CA)n Simple_repeat Simple_repeat 1 59 0 231 61 0 0 chr15 7311053 7311086 -78384668 + (TC)n Simple_repeat Simple_repeat 2 34 0 620 165 10 0 chr15 7311169 7311266 -78384488 + Charlie1a DNA MER1_type 1 98 -1357 6227 130 26 4 chr15 7311269 7312333 -78383421 + L1PB1 LINE L1 4704 5802 -349 425 51 39 13 chr15 7312333 7312411 -78383343 + (TA)n Simple_repeat Simple_repeat 2 81 0 6227 130 26 4 chr15 7312411 7312767 -78382987 + L1PB1 LINE L1 5802 6149 -2 238 271 0 14 chr15 7312767 7312837 -78382917 - L1M4 LINE L1 -2584 3562 3494 4116 188 92 18 chr15 7312842 7313784 -78381970 + Charlie1a DNA MER1_type 95 1106 -349 371 214 110 39 chr15 7313825 7314007 -78381747 - L1ME3A LINE L1 -209 5961 5767 1135 212 0 4 chr15 7314013 7314239 -78381515 - L1PA16 LINE L1 -8 6158 5934 1475 106 0 19 chr15 7314339 7314546 -78381208 - AluSq SINE Alu -110 203 1 594 258 139 0 chr15 7315037 7315246 -78380508 - MIR SINE MIR -4 258 21 2415 85 0 16 chr15 7315631 7315947 -78379807 + AluY SINE Alu 1 311 0 979 248 18 5 chr15 7316746 7316964 -78378790 - MER58A DNA MER1_type -2 222 2 1015 189 0 0 chr15 7317566 7317735 -78378019 - MLT1A1 LTR MaLR 0 365 197 384 174 0 29 chr15 7317739 7317808 -78377946 - MLT1A1 LTR MaLR -298 67 1 796 42 0 0 chr15 7319235 7319330 -78376424 - L1P2 LINE L1 -619 5535 5441 1578 237 68 44 chr15 7319380 7319924 -78375830 - L1MC4 LINE L1 -506 7536 6980 861 184 48 0 chr15 7320462 7320609 -78375145 - FRAM SINE Alu -14 162 9 1072 274 79 51 chr15 7320683 7321290 -78374464 + L2 LINE L2 2310 2933 -381 3356 126 46 59 chr15 7321640 7321777 -78373977 + MER7C DNA MER2_type 1 138 -2890 2394 64 7 3 chr15 7321777 7322073 -78373681 - AluY SINE Alu -12 299 3 3356 126 46 59 chr15 7322073 7322545 -78373209 + MER7C DNA MER2_type 138 602 0 221 339 101 0 chr15 7323231 7323340 -78372414 + L2 LINE L2 3142 3261 -11 22 0 0 0 chr15 7324770 7324792 -78370962 + GC_rich Low_complexity Low_complexity 1 22 0 2436 104 0 0 chr15 7325142 7325509 -78370245 - AluSg SINE Alu 0 367 1 543 267 68 15 chr15 7326224 7326430 -78369324 + L2 LINE L2 2949 3165 -148 212 244 37 49 chr15 7326521 7326603 -78369151 - L2 LINE L2 -51 3221 3141 3976 176 21 32 chr15 7326899 7327505 -78368249 + LTR39 LTR ERV1 1 599 -184 2243 121 3 0 chr15 7327505 7327811 -78367943 - AluSx SINE Alu -5 307 1 3976 176 21 32 chr15 7327811 7327995 -78367759 + LTR39 LTR ERV1 599 783 0 21 57 0 0 chr15 7328148 7328183 -78367571 + AT_rich Low_complexity Low_complexity 1 35 0 1247 256 83 48 chr15 7329307 7329886 -78365868 + L1ME1 LINE L1 823 1421 -4988 4190 233 75 33 chr15 7330000 7330316 -78365438 + L1ME1 LINE L1 4180 4481 -1945 261 0 0 0 chr15 7330316 7330345 -78365409 + (CA)n Simple_repeat Simple_repeat 2 30 0 4190 233 75 33 chr15 7330345 7331693 -78364061 + L1ME1 LINE L1 4481 5953 -473 2229 101 6 25 chr15 7331693 7332009 -78363745 + AluSg SINE Alu 1 310 0 4190 233 75 33 chr15 7332009 7332504 -78363250 + L1ME1 LINE L1 5953 6426 0 417 223 11 11 chr15 7332786 7332880 -78362874 - L1ME LINE L1 -507 5919 5826 1112 234 57 29 chr15 7332885 7333570 -78362184 - L1MDb LINE L1 -3653 2753 2059 1956 153 14 0 chr15 7333596 7333890 -78361864 - AluJb SINE Alu -13 299 2 282 315 31 8 chr15 7337199 7337326 -78358428 - L2 LINE L2 -4 3309 3180 525 254 46 23 chr15 7337432 7337605 -78358149 + MER5B DNA MER1_type 2 178 0 2637 225 92 35 chr15 7338124 7338956 -78356798 - L1MDb LINE L1 -4411 1995 1109 2152 114 0 0 chr15 7338956 7339267 -78356487 - AluSx SINE Alu 0 311 1 2637 225 92 35 chr15 7339267 7339620 -78356134 - L1MDb LINE L1 -5297 1109 777 2695 157 74 9 chr15 7340111 7340666 -78355088 - L1MB8 LINE L1 -16 6162 5572 361 190 139 0 chr15 7340767 7340846 -78354908 - MLT1B LTR MaLR -300 90 1 332 22 0 22 chr15 7342998 7343044 -78352710 + (TG)n Simple_repeat Simple_repeat 2 46 0 317 340 40 0 chr15 7343903 7344053 -78351701 + MIR SINE MIR 92 247 -15 3624 51 0 22 chr15 7348595 7349001 -78346753 + MLT2A1 LTR ERVL 1 397 -47 414 57 0 0 chr15 7349001 7349054 -78346700 + (CA)n Simple_repeat Simple_repeat 2 54 0 3624 51 0 22 chr15 7349054 7349101 -78346653 + MLT2A1 LTR ERVL 397 444 0 36 82 0 0 chr15 7349272 7349357 -78346397 + AT_rich Low_complexity Low_complexity 1 85 0 180 0 0 0 chr15 7350070 7350090 -78345664 + (T)n Simple_repeat Simple_repeat 1 20 0 1600 204 23 69 chr15 7351385 7351777 -78343977 - MLT1A2 LTR MaLR 0 374 1 869 296 92 40 chr15 7351903 7352569 -78343185 - HAL1b LINE L1 -295 1053 354 2139 118 5 62 chr15 7352636 7353010 -78342744 - THE1A LTR MaLR -2 353 1 11769 99 5 0 chr15 7353010 7354582 -78341172 - THE1A-int LTR MaLR 0 1580 1 2011 136 21 51 chr15 7354582 7354957 -78340797 - THE1B LTR MaLR 0 364 1 1952 150 0 27 chr15 7355084 7355384 -78340370 + AluSx SINE Alu 1 292 -20 826 176 96 0 chr15 7355767 7355955 -78339799 - L1MA6 LINE L1 -4 6296 6091 183 277 0 0 chr15 7356450 7356497 -78339257 + L2 LINE L2 3267 3313 0 227 289 105 9 chr15 7357826 7357940 -78337814 - MIR SINE MIR -26 236 112 1443 232 72 5 chr15 7358360 7358774 -78336980 + L1ME2 LINE L1 4740 5181 -965 1316 271 119 18 chr15 7358778 7359530 -78336224 + L1ME2 LINE L1 5282 6137 -27 3575 158 75 7 chr15 7359883 7360560 -78335194 - L1MB2 LINE L1 -7 6164 5442 183 129 0 0 chr15 7361707 7361738 -78334016 + (CAGAA)n Simple_repeat Simple_repeat 3 33 0 204 40 0 0 chr15 7361831 7361856 -78333898 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 809 208 27 6 chr15 7362651 7362834 -78332920 - MER53 DNA DNA 0 189 3 543 216 23 11 chr15 7363086 7363262 -78332492 + (CATA)n Simple_repeat Simple_repeat 1 178 0 1332 119 75 40 chr15 7363278 7363504 -78332250 - MER46A DNA MER2_type -2 234 1 4708 237 60 15 chr15 7363938 7364686 -78331068 + L1M4 LINE L1 3623 4336 -1810 2285 93 0 59 chr15 7364686 7365008 -78330746 + AluSg SINE Alu 1 303 -7 4708 237 60 15 chr15 7365008 7365734 -78330020 + L1M4 LINE L1 4336 5163 -983 230 343 0 0 chr15 7366338 7366408 -78329346 + L2 LINE L2 2930 2999 -314 408 318 50 22 chr15 7366443 7366720 -78329034 + LTR40c LTR ERVL 68 352 -113 1701 188 15 52 chr15 7367193 7367598 -78328156 + MLT1B LTR MaLR 1 390 0 181 258 0 16 chr15 7367870 7367932 -78327822 - L2 LINE L2 -73 3240 3180 677 284 23 23 chr15 7367955 7368173 -78327581 + HsTC2 DNA Tc2 296 513 -1385 307 269 107 61 chr15 7368308 7368400 -78327354 + HsTC2 DNA Tc2 1633 1719 -179 2210 114 3 0 chr15 7368400 7368689 -78327065 + AluSx SINE Alu 1 290 -22 307 269 107 61 chr15 7368689 7368793 -78326961 + HsTC2 DNA Tc2 1719 1838 -60 1953 177 34 46 chr15 7368824 7369173 -78326581 + MLT2D LTR ERVL 4 349 -65 561 63 32 0 chr15 7369173 7369268 -78326486 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 1953 177 34 46 chr15 7369268 7369331 -78326423 + MLT2D LTR ERVL 349 411 -3 232 247 52 13 chr15 7369604 7369681 -78326073 - MIR SINE MIR -116 146 67 426 263 15 23 chr15 7370749 7370882 -78324872 + L2 LINE L2 3182 3313 0 439 301 160 19 chr15 7371121 7371718 -78324036 + L1M4 LINE L1 4741 5421 -749 403 301 205 23 chr15 7372876 7373741 -78322013 - L2 LINE L2 -351 2963 1942 2483 84 0 0 chr15 7374107 7374415 -78321339 + AluSc SINE Alu 1 308 -1 654 166 31 43 chr15 7375069 7375232 -78320522 + MER5A DNA MER1_type 6 166 -23 568 68 14 0 chr15 7375539 7375612 -78320142 - AluSp SINE Alu -174 139 66 838 80 26 0 chr15 7375612 7375725 -78320029 + AluSp/q SINE Alu 187 302 -11 294 307 37 49 chr15 7376433 7376596 -78319158 + MIR SINE MIR 33 193 -69 258 203 51 0 chr15 7377100 7377159 -78318595 + MLT1K LTR MaLR 517 578 -10 456 247 124 34 chr15 7379119 7379157 -78316597 - MIR SINE MIR 0 262 229 2392 125 89 0 chr15 7379157 7379550 -78316204 - MSTC LTR MaLR 0 428 1 456 247 124 34 chr15 7379550 7379689 -78316065 - MIR SINE MIR -33 229 69 229 287 91 42 chr15 7379831 7379974 -78315780 - MLT1J1 LTR MaLR -164 282 133 3945 205 70 3 chr15 7380746 7381620 -78314134 - Charlie1a DNA MER1_type -4 1451 520 529 300 70 36 chr15 7381727 7381892 -78313862 - L1M4 LINE L1 -842 5304 5146 2029 149 0 0 chr15 7381892 7382194 -78313560 - AluSx SINE Alu -9 303 2 529 300 70 36 chr15 7382194 7382415 -78313339 - L1M4 LINE L1 -1000 5146 4905 1130 213 125 86 chr15 7384170 7384587 -78311167 - Charlie1a DNA MER1_type -969 486 54 699 291 124 25 chr15 7384743 7385217 -78310537 + L2 LINE L2 1992 2512 -802 193 254 42 42 chr15 7385496 7385567 -78310187 + L2 LINE L2 2866 2936 -336 1248 243 157 10 chr15 7386439 7386895 -78308859 - MLT1G LTR MaLR -96 494 1 294 73 0 0 chr15 7389217 7389258 -78306496 + (TG)n Simple_repeat Simple_repeat 1 41 0 1274 211 73 10 chr15 7390642 7390972 -78304782 + MLT1A1 LTR MaLR 1 362 -3 745 11 0 0 chr15 7391041 7391128 -78304626 - L1PA3 LINE L1 0 6155 6069 394 314 197 20 chr15 7392396 7392695 -78303059 + L2 LINE L2 2962 3313 0 270 0 0 0 chr15 7392880 7392910 -78302844 + (TG)n Simple_repeat Simple_repeat 2 31 0 197 337 44 12 chr15 7394264 7394368 -78301386 - MIR SINE MIR -47 161 55 1827 160 45 15 chr15 7394385 7394722 -78301032 + MLT1A1 LTR MaLR 14 360 -5 229 270 0 0 chr15 7394905 7394979 -78300775 + (TA)n Simple_repeat Simple_repeat 2 75 0 611 273 35 0 chr15 7395319 7395491 -78300263 - MER5B DNA MER1_type 0 178 1 298 282 40 24 chr15 7395588 7395712 -78300042 - L2 LINE L2 -30 3283 3158 2871 3 0 0 chr15 7395727 7396028 -78299726 - AluYa5 SINE Alu -10 301 1 649 308 68 39 chr15 7396384 7396722 -78299032 - L2 LINE L2 -686 2628 2281 3422 254 70 17 chr15 7396795 7398016 -78297738 - L1M4 LINE L1 -1847 4299 3015 1704 223 44 24 chr15 7398020 7398478 -78297276 - L1ME1 LINE L1 0 6166 5700 840 231 10 10 chr15 7398817 7399016 -78296738 + MER96B DNA MER1_type? 1 199 -218 248 331 131 19 chr15 7399251 7399411 -78296343 + MIR SINE MIR 22 199 -63 3357 219 83 50 chr15 7400848 7402170 -78293584 - L1MC5 LINE L1 -34 7927 6551 480 331 35 26 chr15 7402300 7402611 -78293143 - L1 LINE L1 -1815 4331 4018 423 0 0 0 chr15 7402623 7402670 -78293084 + (CA)n Simple_repeat Simple_repeat 2 48 0 2988 56 24 0 chr15 7402681 7403058 -78292696 - L1PA10 LINE L1 -15 6153 5768 14526 180 30 9 chr15 7403063 7408575 -78287179 - L1PB1 LINE L1 0 6867 1093 3617 215 68 12 chr15 7408579 7409536 -78286218 - L1PB1 LINE L1 -5818 1045 36 4124 101 32 8 chr15 7409546 7410100 -78285654 - L1P4 LINE L1 -387 5781 5196 2621 30 0 13 chr15 7410100 7410399 -78285355 + AluY SINE Alu 1 295 -16 4124 101 32 8 chr15 7410399 7410887 -78284867 - L1P4 LINE L1 -972 5196 4721 562 315 34 88 chr15 7410957 7411150 -78284604 - L1M4 LINE L1 -2251 3895 3693 1868 121 4 0 chr15 7411150 7411423 -78284331 - L1PA15 LINE L1 0 6165 5892 562 315 34 88 chr15 7411423 7411797 -78283957 - L1M4 LINE L1 -2453 3693 3359 395 205 36 0 chr15 7412431 7412514 -78283240 - Tigger5 DNA MER2_type 0 2323 2238 335 192 14 14 chr15 7412564 7412637 -78283117 - Tigger5 DNA MER2_type 0 2323 2251 234 253 89 79 chr15 7414254 7414444 -78281310 + MLT1K LTR MaLR 395 586 -2 255 279 87 10 chr15 7414652 7414756 -78280998 + MLT1J LTR MaLR 342 453 -58 644 268 75 56 chr15 7415068 7415592 -78280162 - L1MC/D LINE L1 -517 5647 5268 1018 275 90 14 chr15 7417016 7417383 -78278371 + MLT1I LTR MaLR 1 395 -14 297 233 58 0 chr15 7417396 7417482 -78278272 + L2 LINE L2 2188 2278 -1036 365 324 58 6 chr15 7417490 7417663 -78278091 + L2 LINE L2 2077 2258 -1056 321 26 0 0 chr15 7417762 7417800 -78277954 + (CA)n Simple_repeat Simple_repeat 2 39 0 180 111 0 0 chr15 7417893 7417920 -78277834 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 318 228 65 76 chr15 7418865 7419049 -78276705 - L1MC/D LINE L1 -1467 4679 4498 755 346 84 31 chr15 7419082 7419761 -78275993 + L2 LINE L2 1865 2579 -735 184 322 46 107 chr15 7420074 7420335 -78275419 + L2 LINE L2 2993 3237 -35 1718 133 84 31 chr15 7420372 7420694 -78275060 + MER44D DNA MER2_type 1 609 0 194 281 109 0 chr15 7420745 7420809 -78274945 + MIR3 SINE MIR 9 79 -129 1770 167 35 12 chr15 7421385 7421727 -78274027 + MLT1A1 LTR MaLR 1 350 -15 339 327 10 0 chr15 7422090 7422194 -78273560 + MIR SINE MIR 41 145 -117 3976 125 39 3 chr15 7422697 7423320 -78272434 + L1MC1 LINE L1 5689 6333 0 192 263 40 0 chr15 7424598 7424674 -78271080 + MIR SINE MIR 158 236 -26 497 311 212 20 chr15 7424824 7425126 -78270628 + L2 LINE L2 2912 3271 -1 6775 70 20 2 chr15 7425530 7426673 -78269081 + L1PA13 LINE L1 4335 5513 -650 2195 95 0 41 chr15 7426673 7426989 -78268765 + AluSx SINE Alu 1 303 -9 6775 70 20 2 chr15 7426989 7427648 -78268106 + L1PA13 LINE L1 5513 6159 -4 344 265 10 20 chr15 7427738 7427840 -78267914 + L1MC5 LINE L1 7813 7913 -48 30 43 0 43 chr15 7428143 7428213 -78267541 + AT_rich Low_complexity Low_complexity 1 67 0 1855 139 4 0 chr15 7428272 7428531 -78267223 - AluSx SINE Alu -30 282 23 276 316 114 42 chr15 7428707 7429226 -78266528 + L1ME LINE L1 5267 5822 -340 186 43 0 0 chr15 7430814 7430837 -78264917 + (AAATG)n Simple_repeat Simple_repeat 2 24 0 1708 148 81 0 chr15 7431034 7431305 -78264449 - AluSx SINE Alu -19 293 1 190 315 69 72 chr15 7431315 7431661 -78264093 - L2 LINE L2 -24 3289 2945 798 253 70 57 chr15 7431980 7432674 -78263080 + L1MDa LINE L1 2403 3287 -3253 249 221 22 177 chr15 7432670 7432764 -78262990 + L1MC5 LINE L1 7759 7813 -148 * 749 54 0 0 chr15 7432764 7432856 -78262898 - L1PA6 LINE L1 -7 6147 6056 249 221 22 177 chr15 7432856 7432942 -78262812 + L1MC5 LINE L1 7813 7911 -50 484 276 117 38 chr15 7432992 7433997 -78261757 + L1MDa LINE L1 3254 4458 -2082 5028 243 64 80 chr15 7434002 7435053 -78260701 + L1ME2 LINE L1 2215 3282 -2951 854 170 0 0 chr15 7435053 7435194 -78260560 + FLAM_C SINE Alu 1 141 -2 5028 243 64 80 chr15 7435194 7437764 -78257990 + L1ME2 LINE L1 3282 5859 -374 245 250 0 62 chr15 7437811 7437891 -78257863 + L1ME2 LINE L1 5859 5933 -298 690 268 36 13 chr15 7438077 7438301 -78257453 + L1ME2 LINE L1 5995 6223 -10 * 4014 207 129 16 chr15 7438298 7439613 -78256141 + L1MC4 LINE L1 6345 7713 -95 297 243 19 19 chr15 7439614 7439717 -78256037 + (TA)n Simple_repeat Simple_repeat 1 103 0 284 268 28 42 chr15 7439731 7439873 -78255881 + L1MC4 LINE L1 7902 8041 -1 896 189 33 6 chr15 7439895 7440075 -78255679 + L1ME LINE L1 5539 5723 -447 489 224 0 0 chr15 7440073 7440171 -78255583 - L1ME LINE L1 -363 5807 5710 * 799 248 105 33 chr15 7440163 7440254 -78255500 + L1ME LINE L1 5375 5458 -712 2754 28 6 0 chr15 7440254 7440575 -78255179 + L1PA4 LINE L1 5831 6153 -2 799 248 105 33 chr15 7440575 7440874 -78254880 + L1ME LINE L1 5458 5793 -377 * 5647 178 16 40 chr15 7440870 7441403 -78254351 + L1PA16 LINE L1 4027 4572 -1594 2137 121 17 0 chr15 7441403 7441700 -78254054 + AluSq SINE Alu 1 302 -11 5647 178 16 40 chr15 7441700 7443062 -78252692 + L1PA16 LINE L1 4572 5865 -301 1101 208 4 73 chr15 7443165 7443439 -78252315 + MLT1B LTR MaLR 132 386 -4 251 132 59 0 chr15 7444049 7444117 -78251637 + (TG)n Simple_repeat Simple_repeat 1 72 0 283 189 20 33 chr15 7444160 7444313 -78251441 + (TG)n Simple_repeat Simple_repeat 2 152 0 570 256 45 0 chr15 7446290 7446446 -78249308 + MER103 DNA DNA 3 165 -1 347 339 75 18 chr15 7446775 7447159 -78248595 - MLT1I LTR MaLR -1 408 3 2230 130 0 0 chr15 7447275 7447574 -78248180 - AluSx SINE Alu -13 299 1 203 309 82 10 chr15 7448205 7448302 -78247452 - MIR SINE MIR -69 139 36 2349 62 20 14 chr15 7449159 7449451 -78246303 + AluY SINE Alu 1 294 -17 736 204 11 43 chr15 7450588 7450774 -78244980 + MLT1A1 LTR MaLR 10 189 -176 819 268 5 0 chr15 7450794 7450992 -78244762 + MLT1A1 LTR MaLR 164 362 -3 627 293 154 17 chr15 7451184 7451542 -78244212 + MLT1I LTR MaLR 3 409 0 23 0 0 0 chr15 7451573 7451596 -78244158 + AT_rich Low_complexity Low_complexity 1 23 0 247 146 0 21 chr15 7452127 7452175 -78243579 + L1MD3 LINE L1 7938 7984 -11 243 241 56 19 chr15 7452424 7452586 -78243168 + (TA)n Simple_repeat Simple_repeat 1 168 0 257 247 141 12 chr15 7453242 7453327 -78242427 - MIR SINE MIR -27 235 140 4564 167 40 23 chr15 7453527 7453873 -78241881 - L1MB8 LINE L1 0 6178 5839 2296 84 0 40 chr15 7453873 7454195 -78241559 - AluSc SINE Alu 0 309 1 4564 167 40 23 chr15 7454195 7454914 -78240840 - L1MB8 LINE L1 -339 5839 5097 238 302 90 32 chr15 7457337 7457526 -78238228 + L1MC/D LINE L1 3882 4081 -2065 336 223 161 44 chr15 7457801 7458075 -78237679 + L1MC/D LINE L1 4524 4829 -1317 258 270 14 0 chr15 7458121 7458195 -78237559 + MLT1L LTR MaLR 3 77 -538 21 0 0 0 chr15 7458670 7458691 -78237063 + AT_rich Low_complexity Low_complexity 1 21 0 659 304 105 36 chr15 7458900 7459262 -78236492 + MLT1J2 LTR MaLR 62 448 -2 2216 112 24 37 chr15 7459303 7459679 -78236075 + THE1C LTR MaLR 3 373 -2 10984 101 14 33 chr15 7459681 7461292 -78234462 + THE1C-int LTR MaLR 1 1580 0 2013 103 44 82 chr15 7461294 7461682 -78234072 + THE1C LTR MaLR 3 375 0 266 299 53 66 chr15 7461830 7462074 -78233680 + L1MC/D LINE L1 5303 5543 -2265 356 278 20 13 chr15 7462897 7463048 -78232706 + (TCTA)n Simple_repeat Simple_repeat 2 153 0 252 170 0 0 chr15 7463186 7463239 -78232515 + (TCCA)n Simple_repeat Simple_repeat 4 56 0 381 255 5 54 chr15 7463248 7463432 -78232322 + (TCTG)n Simple_repeat Simple_repeat 4 178 0 1576 244 111 12 chr15 7464109 7464605 -78231149 + L1M4 LINE L1 4463 5007 -1139 187 254 6 36 chr15 7464633 7464798 -78230956 + (TG)n Simple_repeat Simple_repeat 1 160 0 203 138 0 0 chr15 7465467 7465496 -78230258 + L2 LINE L2 3216 3244 -28 275 125 0 0 chr15 7465510 7465558 -78230196 + L1MA3 LINE L1 6258 6305 0 1596 231 97 43 chr15 7466261 7466799 -78228955 - MLT1F1 LTR MaLR 0 567 1 424 216 69 99 chr15 7467114 7467256 -78228498 + LTR37B LTR ERV1 185 319 -149 2305 63 0 46 chr15 7467256 7467558 -78228196 + AluY SINE Alu 1 288 -23 424 216 69 99 chr15 7467558 7467647 -78228107 + LTR37B LTR ERV1 319 409 -59 210 302 16 93 chr15 7469453 7469582 -78226172 - MIR SINE MIR -130 132 14 835 286 101 49 chr15 7469699 7469826 -78225928 + L1MC4 LINE L1 7126 7245 -797 2379 88 0 7 chr15 7469826 7470122 -78225632 + AluSc SINE Alu 1 294 -15 835 286 101 49 chr15 7470122 7470773 -78224981 + L1MC4 LINE L1 7245 8042 0 40 59 0 0 chr15 7471449 7471517 -78224237 + AT_rich Low_complexity Low_complexity 1 68 0 21 71 0 0 chr15 7471910 7471952 -78223802 + AT_rich Low_complexity Low_complexity 1 42 0 2656 192 15 65 chr15 7472309 7472986 -78222768 + L1M4 LINE L1 4658 5300 -846 * 5143 143 37 3 chr15 7472980 7474548 -78221206 + L1MA4 LINE L1 4486 6110 -190 3572 144 29 53 chr15 7476372 7476739 -78219015 - L1MA8 LINE L1 -155 6136 5793 2566 50 3 0 chr15 7476739 7477036 -78218718 - AluY SINE Alu -13 298 1 3572 144 29 53 chr15 7477036 7477391 -78218363 - L1MA8 LINE L1 -498 5793 5431 205 287 78 30 chr15 7479516 7479684 -78216070 - MIR SINE MIR -11 251 75 22 0 0 0 chr15 7480031 7480053 -78215701 + AT_rich Low_complexity Low_complexity 1 22 0 628 230 40 0 chr15 7480316 7480464 -78215290 + MER5A DNA MER1_type 1 154 -35 2561 61 0 0 chr15 7480974 7481271 -78214483 - AluY SINE Alu -14 297 1 222 258 0 0 chr15 7482414 7482476 -78213278 + CT-rich Low_complexity Low_complexity 1 62 0 2524 211 42 24 chr15 7482654 7483281 -78212473 + L1MC4a LINE L1 7159 7796 -12 37 39 0 0 chr15 7483281 7483332 -78212422 + AT_rich Low_complexity Low_complexity 1 51 0 7044 207 65 10 chr15 7483335 7484927 -78210827 + L1MD1 LINE L1 3270 5083 -1159 231 36 0 0 chr15 7484927 7484955 -78210799 + (GAAA)n Simple_repeat Simple_repeat 3 30 0 7044 207 65 10 chr15 7484955 7486182 -78209572 + L1MD1 LINE L1 5083 6241 -1 273 250 26 0 chr15 7486846 7486922 -78208832 + MER5A DNA MER1_type 29 106 -83 204 226 19 0 chr15 7486981 7487034 -78208720 + MIR SINE MIR 133 186 -76 627 227 129 12 chr15 7487718 7487881 -78207873 + MER58A DNA MER1_type 42 223 -1 256 373 35 35 chr15 7487890 7488091 -78207663 - L3 LINE CR1 -920 657 457 407 302 38 19 chr15 7488099 7488258 -78207496 - MIR3 SINE MIR -15 193 32 361 278 97 36 chr15 7490028 7490339 -78205415 + L1ME4a LINE L1 5396 5726 -568 267 313 12 0 chr15 7491677 7491757 -78203997 + (TA)n Simple_repeat Simple_repeat 2 82 0 275 294 76 0 chr15 7492016 7492135 -78203619 + L1ME4a LINE L1 5991 6118 -3 2284 92 27 0 chr15 7494357 7494650 -78201104 + AluSg SINE Alu 2 302 -8 1854 150 134 28 chr15 7497814 7498201 -78197553 - MSTA LTR MaLR 0 428 1 5625 57 1 11 chr15 7498357 7499060 -78196694 + L1PA7 LINE L1 5459 6154 0 516 216 78 33 chr15 7499064 7499217 -78196537 + L1MC4 LINE L1 7587 7746 -296 284 0 28 0 chr15 7500175 7500211 -78195543 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 2287 88 0 3 chr15 7500211 7500490 -78195264 - AluSg SINE Alu -32 278 1 306 294 17 25 chr15 7500997 7501116 -78194638 + MIR SINE MIR 112 229 -33 729 94 0 0 chr15 7601198 7601294 -78094460 - LOR1a LTR ERV1 -401 96 1 993 108 28 34 chr15 7601294 7601470 -78094284 - L1MB4 LINE L1 -317 5863 5689 699 151 60 12 chr15 7601477 7601612 -78094142 - L1MB4 LINE L1 -711 5463 5315 2147 108 10 3 chr15 7601612 7601909 -78093845 - AluSx SINE Alu -13 299 1 699 151 60 12 chr15 7601909 7601940 -78093814 - L1MB4 LINE L1 -859 5315 5287 2034 114 3 17 chr15 7602322 7602620 -78093134 + AluSq SINE Alu 12 305 -8 691 170 44 11 chr15 7602622 7602888 -78092866 + L1MA9 LINE L1 5942 6312 0 24 0 0 0 chr15 7602891 7602915 -78092839 + AT_rich Low_complexity Low_complexity 1 24 0 3211 203 12 9 chr15 7602999 7603683 -78092071 + L1 LINE L1 3832 4517 -1629 697 106 0 113 chr15 7603783 7603919 -78091835 + AluSg/x SINE Alu 185 305 0 1945 97 10 34 chr15 7603919 7604217 -78091537 - AluSq SINE Alu -22 291 1 271 319 60 9 chr15 7605553 7605669 -78090085 - MIR SINE MIR -56 152 31 1640 198 3 13 chr15 7605677 7605980 -78089774 + AluJo SINE Alu 1 300 -12 704 133 0 0 chr15 7605984 7606082 -78089672 - AluSg/x SINE Alu -10 302 205 21 36 0 0 chr15 7606659 7606687 -78089067 + AT_rich Low_complexity Low_complexity 1 28 0 2528 81 0 0 chr15 7608182 7608489 -78087265 - AluY SINE Alu -4 307 1 1334 128 5 0 chr15 7608490 7608678 -78087076 + Charlie3 DNA MER1_type 2518 2706 -4 1317 146 5 0 chr15 7608680 7608900 -78086854 - L1MB3 LINE L1 -259 5924 5704 2024 137 0 3 chr15 7608975 7609260 -78086494 - AluSx SINE Alu -28 284 1 3592 201 45 20 chr15 7609260 7610183 -78085571 - L1MB3 LINE L1 -724 5460 4511 2017 148 3 3 chr15 7610686 7610983 -78084771 - AluSx SINE Alu -15 297 1 32 0 0 0 chr15 7611370 7611402 -78084352 + AT_rich Low_complexity Low_complexity 1 32 0 1232 279 99 25 chr15 7611530 7612014 -78083740 + MLT1E LTR MaLR 1 520 -73 11683 28 0 0 chr15 7612114 7614179 -78081575 + L1PA3 LINE L1 4090 6155 0 2488 77 0 0 chr15 7614201 7614512 -78081242 + AluY SINE Alu 1 311 0 205 306 16 0 chr15 7615488 7615550 -78080204 - L2 LINE L2 -219 3053 2991 339 91 73 0 chr15 7615554 7615609 -78080145 + L1MB1 LINE L1 5789 5847 -342 2086 190 28 2 chr15 7615712 7616134 -78079620 - L1MB3 LINE L1 -2383 3763 3331 2161 84 7 7 chr15 7616137 7616434 -78079320 - AluY SINE Alu -10 301 5 372 22 0 0 chr15 7616445 7616490 -78079264 + (CA)n Simple_repeat Simple_repeat 2 46 0 22 56 0 0 chr15 7616587 7616623 -78079131 + GC_rich Low_complexity Low_complexity 1 36 0 228 356 30 15 chr15 7617352 7617484 -78078270 - MLT1I LTR MaLR -40 369 236 429 277 106 0 chr15 7618276 7618417 -78077337 - L1ME LINE L1 -484 5686 5531 2012 208 59 13 chr15 7618452 7618924 -78076830 - L1PA15 LINE L1 -1411 4735 4242 * 4117 212 23 37 chr15 7618919 7620380 -78075374 + L1PA15 LINE L1 4731 6164 -1 1011 286 58 25 chr15 7620389 7621107 -78074647 - L1ME LINE L1 -694 5470 4730 1782 141 10 47 chr15 7621160 7621457 -78074297 + AluJo SINE Alu 3 288 -24 784 112 5 53 chr15 7621484 7621672 -78074082 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 1983 194 29 0 chr15 7621679 7622060 -78073694 + L1MA8 LINE L1 5894 6285 -6 2198 99 41 0 chr15 7622069 7622363 -78073391 + AluSp SINE Alu 1 306 -7 2910 56 0 6 chr15 7622371 7622713 -78073041 + L1PA8 LINE L1 5825 6164 -8 3038 233 74 26 chr15 7622848 7623792 -78071962 - L1MC3 LINE L1 -8 7777 6789 521 238 105 68 chr15 7623766 7624014 -78071740 - L1ME LINE L1 -1978 4168 3912 * 1178 163 0 11 chr15 7624114 7624304 -78071450 + LOR1a LTR ERV1 310 497 0 1205 172 33 20 chr15 7624304 7624548 -78071206 + L1MB4 LINE L1 5922 6168 -12 428 306 32 24 chr15 7624631 7624879 -78070875 + L1ME LINE L1 5472 5721 -400 1818 79 126 14 chr15 7625841 7626118 -78069636 + AluY SINE Alu 1 308 -3 374 264 130 47 chr15 7626118 7626331 -78069423 - MIR SINE MIR -37 225 3 905 143 0 15 chr15 7626652 7626785 -78068969 + FLAM_C SINE Alu 2 132 -1 24 67 0 0 chr15 7627090 7627135 -78068619 + AT_rich Low_complexity Low_complexity 1 45 0 1223 159 15 0 chr15 7630247 7630442 -78065312 - AluJo SINE Alu -111 201 4 419 271 64 0 chr15 7630846 7630986 -78064768 + MER3 DNA MER1_type 1 149 -60 1633 167 51 4 chr15 7630988 7631264 -78064490 - AluJb SINE Alu -12 300 12 327 298 107 8 chr15 7631553 7631674 -78064080 + L2 LINE L2 3136 3268 -4 2309 101 0 3 chr15 7632492 7632799 -78062955 + AluSx SINE Alu 3 308 -4 903 133 7 7 chr15 7632842 7632985 -78062769 + FLAM_C SINE Alu 1 143 0 252 184 0 0 chr15 7632988 7633026 -78062728 + AluJ/F(R)AM SINE Alu 131 168 -134 229 282 0 0 chr15 7633077 7633148 -78062606 + A-rich Low_complexity Low_complexity 1 71 0 1108 182 8 29 chr15 7634430 7634672 -78061082 + L1PA14 LINE L1 5925 6161 0 1820 142 62 8 chr15 7634675 7635027 -78060727 + L1MB7 LINE L1 5579 5949 -235 233 302 0 0 chr15 7636197 7636260 -78059494 - MIR SINE MIR 0 262 200 2182 115 0 7 chr15 7636287 7636582 -78059172 + AluSx SINE Alu 1 293 -19 264 254 231 6 chr15 7636722 7636895 -78058859 - MLT1I LTR MaLR -197 212 1 377 277 17 8 chr15 7636927 7637046 -78058708 - MIR SINE MIR -122 140 21 2168 89 11 0 chr15 7637057 7637363 -78058391 - AluSp SINE Alu 0 309 1 309 183 0 0 chr15 7637367 7637427 -78058327 - L1MA8 LINE L1 0 6291 6232 2950 183 29 11 chr15 7637461 7638014 -78057740 - L1MA8 LINE L1 -47 6244 5682 193 328 0 30 chr15 7638222 7638289 -78057465 - MIR SINE MIR -192 70 6 306 337 10 10 chr15 7638447 7638548 -78057206 - MER91B DNA MER1_type 0 190 90 264 343 9 9 chr15 7638565 7638670 -78057084 - MER91B DNA MER1_type -61 129 25 318 340 125 24 chr15 7639050 7639338 -78056416 + L3 LINE CR1 733 1049 -528 31351 39 34 3 chr15 7639978 7643818 -78051936 + L1P LINE L1 1 3961 -2185 239 318 56 0 chr15 7644377 7644484 -78051270 + L1ME LINE L1 5615 5727 -394 3832 27 0 0 chr15 7644812 7645250 -78050504 - L1PA3 LINE L1 -7 6148 5711 982 9 0 0 chr15 7645250 7645357 -78050397 - U6 snRNA snRNA 0 107 1 22 0 0 0 chr15 7646918 7646940 -78048814 + AT_rich Low_complexity Low_complexity 1 22 0 2400 230 20 52 chr15 7646943 7647026 -78048728 - L1MA9 LINE L1 -38 6274 6190 474 65 0 0 chr15 7647026 7647088 -78048666 + (TA)n Simple_repeat Simple_repeat 1 62 0 2400 230 20 52 chr15 7647088 7647760 -78047994 - L1MA9 LINE L1 -122 6190 5543 4610 200 29 4 chr15 7647771 7648793 -78046961 - L1MA9 LINE L1 -743 5403 4356 570 209 47 16 chr15 7648902 7649093 -78046661 - L1MA9 LINE L1 -2939 3207 3011 1056 187 60 60 chr15 7649109 7649392 -78046362 + L1MD2 LINE L1 6075 6357 -2 2046 114 4 0 chr15 7649800 7650072 -78045682 - AluSg SINE Alu -8 302 30 459 228 41 0 chr15 7653504 7653627 -78042127 - L1M4 LINE L1 -1278 4868 4741 2469 129 24 62 chr15 7653659 7654109 -78041645 + Tigger2a DNA MER2_type 1 433 -1 1564 181 59 25 chr15 7654116 7654437 -78041317 + MER2 DNA MER2_type 1 332 -13 348 181 194 0 chr15 7654443 7654515 -78041239 + MER21B LTR ERV1 11 96 -767 3035 231 46 10 chr15 7654515 7655414 -78040340 - L1M4 LINE L1 -2200 3946 3016 1621 250 116 27 chr15 7655387 7656713 -78039041 - L1MEc LINE L1 -2525 3690 1740 * 341 205 111 0 chr15 7656738 7656855 -78038899 - L1MEc LINE L1 -4636 1579 1450 2372 95 3 13 chr15 7656859 7657174 -78038580 - AluSp SINE Alu -1 312 1 1017 145 0 7 chr15 7657176 7657328 -78038426 - FRAM SINE Alu -5 171 21 698 197 8 0 chr15 7657568 7657695 -78038059 - FLAM_C SINE Alu -3 130 3 954 273 48 28 chr15 7657751 7658151 -78037603 - L1MEc LINE L1 -5631 765 358 262 226 10 78 chr15 7658197 7658299 -78037455 - L1MEc LINE L1 -6013 383 289 1215 165 0 0 chr15 7658350 7658556 -78037198 - Tigger1 DNA MER2_type -420 1998 1793 1169 156 28 28 chr15 7658656 7658868 -78036886 - AluJb SINE Alu -93 219 8 405 113 141 0 chr15 7659015 7659086 -78036668 - AluJ/FRAM SINE Alu -16 296 216 2039 85 0 0 chr15 7659352 7659599 -78036155 - AluSg SINE Alu -63 247 1 940 95 0 0 chr15 7660112 7660228 -78035526 + AluSq/x SINE Alu 1 116 -196 851 131 0 0 chr15 7660228 7660350 -78035404 + AluSc SINE Alu 166 287 -22 1136 160 5 0 chr15 7660350 7660537 -78035217 + AluSx SINE Alu 119 306 -4 252 299 41 0 chr15 7660635 7660732 -78035022 + MIR SINE MIR 92 192 -70 2433 89 0 13 chr15 7661708 7662023 -78033731 - AluY SINE Alu 0 311 1 1622 80 40 13 chr15 7662308 7662532 -78033222 + MER30 DNA MER1_type 1 230 0 972 155 42 237 chr15 7662623 7662773 -78032981 - L1MD3 LINE L1 -10 7985 7808 657 189 15 8 chr15 7662773 7662905 -78032849 + U8 snRNA snRNA 4 136 0 972 155 42 237 chr15 7662905 7663129 -78032625 - L1MD3 LINE L1 -187 7808 7542 195 42 0 0 chr15 7663129 7663153 -78032601 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1970 114 0 0 chr15 7663154 7663417 -78032337 - AluSg SINE Alu -47 263 1 972 155 42 237 chr15 7663417 7663563 -78032191 - L1MD3 LINE L1 -258 7737 7564 328 279 38 51 chr15 7664037 7664195 -78031559 + L2 LINE L2 3158 3313 0 23 33 0 0 chr15 7664288 7664318 -78031436 + AT_rich Low_complexity Low_complexity 1 30 0 2018 189 13 30 chr15 7664716 7665113 -78030641 - MLT1B LTR MaLR 0 390 1 420 236 79 21 chr15 7666003 7666143 -78029611 + MER67A LTR ERV1 396 543 0 551 152 29 9 chr15 7666786 7666891 -78028863 - MLT1B LTR MaLR 0 374 268 590 215 55 140 chr15 7667445 7667738 -78028016 - MLT1B LTR MaLR -122 268 1 980 280 151 44 chr15 7667814 7668638 -78027116 + HAL1 LINE L1 957 1868 -639 634 203 36 0 chr15 7668856 7668994 -78026760 + MER5A DNA MER1_type 22 164 -25 222 242 61 53 chr15 7668881 7669013 -78026741 - MER5A DNA MER1_type -35 154 22 * 709 244 23 0 chr15 7669023 7669199 -78026555 + MER58A DNA MER1_type 45 224 0 13754 102 109 17 chr15 7670011 7670219 -78025535 - L1PBa LINE L1 -3752 3110 2923 1802 150 44 7 chr15 7670219 7670512 -78025242 - AluSx SINE Alu -8 304 1 13754 102 109 17 chr15 7670512 7670523 -78025231 - L1PBa LINE L1 -3939 2923 2914 2209 66 27 40 chr15 7670523 7670824 -78024930 - AluY SINE Alu -14 297 1 13754 102 109 17 chr15 7670824 7672867 -78022887 - L1PBa LINE L1 -3948 2914 634 1114 155 26 0 chr15 7672867 7673060 -78022694 - L1PBa LINE L1 -6663 200 3 207 69 0 0 chr15 7675984 7676013 -78019741 + (CCCCCA)n Simple_repeat Simple_repeat 6 34 0 969 163 0 18 chr15 7677135 7677301 -78018453 - 7SLRNA srpRNA srpRNA -63 257 95 225 250 102 0 chr15 7677986 7678074 -78017680 - MIR SINE MIR -70 192 96 1934 140 0 39 chr15 7678125 7678433 -78017321 - AluSx SINE Alu -15 297 2 424 217 104 47 chr15 7680551 7680721 -78015033 - MIR SINE MIR -58 150 16 234 149 40 81 chr15 7680887 7680907 -78014847 - L1MC4a LINE L1 -1853 5955 5936 384 22 0 0 chr15 7680907 7680952 -78014802 + (CA)n Simple_repeat Simple_repeat 1 45 0 234 149 40 81 chr15 7680952 7681005 -78014749 - L1MC4a LINE L1 -1872 5936 5885 289 198 62 31 chr15 7682349 7682445 -78013309 - L2 LINE L2 -5 3267 3169 225 364 0 0 chr15 7682522 7682621 -78013133 - MIR SINE MIR -79 129 31 386 257 99 41 chr15 7683758 7683905 -78011849 - MIR SINE MIR -70 192 32 2358 94 7 0 chr15 7683905 7684203 -78011551 - AluY SINE Alu -11 300 1 386 257 99 41 chr15 7684203 7684226 -78011528 - MIR SINE MIR -230 32 12 1943 122 10 0 chr15 7686889 7687210 -78008544 + AluY SINE Alu 1 311 0 528 267 172 49 chr15 7687245 7687607 -78008147 + L1M4 LINE L1 2922 3312 -2834 2460 52 0 13 chr15 7687646 7687953 -78007801 - AluY SINE Alu -8 303 1 2273 80 0 3 chr15 7688386 7688697 -78007057 - AluY SINE Alu -1 310 1 252 37 8 0 chr15 7689066 7689143 -78006611 + (CA)n Simple_repeat Simple_repeat 1 34 0 1233 179 0 17 chr15 7689541 7689775 -78005979 - AluSg/x SINE Alu 0 310 81 238 288 16 114 chr15 7690147 7690315 -78005439 - L2 LINE L2 -211 3061 2910 1861 130 0 18 chr15 7690315 7690635 -78005119 + AluSx SINE Alu 6 320 0 238 288 16 114 chr15 7690635 7690649 -78005105 - L2 LINE L2 -362 2910 2896 235 149 0 21 chr15 7691143 7691190 -78004564 - MADE1 DNA Mariner -1 79 34 539 285 104 10 chr15 7691835 7692028 -78003726 - L2 LINE L2 0 3313 3103 450 189 14 0 chr15 7692077 7692151 -78003603 - MER33 DNA MER1_type -246 78 4 226 267 30 0 chr15 7692358 7692459 -78003295 - L1MEd LINE L1 -2775 3354 3251 57 39 0 0 chr15 7692475 7692553 -78003201 + AT_rich Low_complexity Low_complexity 1 78 0 360 214 22 0 chr15 7692626 7692715 -78003039 - L1MC5 LINE L1 -72 7889 7799 2077 124 7 0 chr15 7692818 7693125 -78002629 - AluSx SINE Alu -3 309 1 526 332 84 8 chr15 7693202 7693452 -78002302 + L2 LINE L2 3045 3313 0 787 169 11 56 chr15 7693948 7694126 -78001628 - MER77 LTR ERV1 -20 585 416 * 1205 165 30 121 chr15 7694125 7694422 -78001332 - MER77 LTR ERV1 -335 270 1 386 290 65 0 chr15 7694422 7694546 -78001208 - L1M4 LINE L1 -1442 5406 5275 306 342 97 15 chr15 7694816 7695012 -78000742 - L1M4 LINE L1 -2532 4316 4105 565 234 69 58 chr15 7695056 7695244 -78000510 + MLT1F LTR MaLR 163 352 -190 189 0 0 0 chr15 7695244 7695265 -78000489 + (T)n Simple_repeat Simple_repeat 1 21 0 203 191 48 0 chr15 7695649 7695691 -78000063 - MIR SINE MIR -116 146 103 357 263 98 103 chr15 7695917 7696469 -77999285 - L1M4 LINE L1 -5516 1333 785 48 72 0 0 chr15 7698133 7698230 -77997524 + GC_rich Low_complexity Low_complexity 1 97 0 28 29 0 0 chr15 7698246 7698281 -77997473 + GC_rich Low_complexity Low_complexity 1 35 0 27 35 0 0 chr15 7698483 7698512 -77997242 + GC_rich Low_complexity Low_complexity 1 29 0 649 259 33 24 chr15 7698540 7698752 -77997002 + MLT1F LTR MaLR 329 542 0 359 240 117 52 chr15 7698840 7698994 -77996760 - L1MEd LINE L1 -3316 2813 2650 467 349 72 16 chr15 7699078 7699382 -77996372 - L1MEd LINE L1 -3670 2459 2139 1349 199 55 2 chr15 7699382 7699774 -77995980 - LTR53 LTR ERVL -12 507 8 743 245 88 111 chr15 7700234 7700667 -77995087 + LTR16A LTR ERVL 8 430 -20 359 353 31 36 chr15 7700674 7700898 -77994856 - L1MEd LINE L1 -5524 595 373 325 298 101 6 chr15 7701024 7701192 -77994562 - L1MEd LINE L1 -5922 197 14 399 195 81 0 chr15 7701897 7701984 -77993770 + MLT1F1 LTR MaLR 474 567 0 1819 198 29 3 chr15 7706506 7706855 -77988899 + MLT2D LTR ERVL 1 358 -56 200 146 0 42 chr15 7706924 7706972 -77988782 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 361 102 0 0 chr15 7707002 7707051 -77988703 + MLT2D LTR ERVL 349 397 0 246 255 0 0 chr15 7707864 7707908 -77987846 + CT-rich Low_complexity Low_complexity 1 47 -4 2113 117 3 0 chr15 7707908 7708208 -77987546 - AluSx SINE Alu -11 301 1 677 325 60 39 chr15 7708275 7708743 -77987011 - L2 LINE L2 0 3313 2836 201 94 0 0 chr15 7709228 7709260 -77986494 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 399 330 53 15 chr15 7709289 7709495 -77986259 - L1M4 LINE L1 -2712 3434 3221 259 250 31 0 chr15 7709502 7709566 -77986188 - L1M4 LINE L1 -2562 3584 3519 21 0 0 0 chr15 7709579 7709600 -77986154 + AT_rich Low_complexity Low_complexity 1 21 0 1907 124 0 20 chr15 7709610 7709909 -77985845 + AluSx SINE Alu 1 293 -19 270 0 0 0 chr15 7710039 7710069 -77985685 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1868 105 4 15 chr15 7710069 7710208 -77985546 - AluSc SINE Alu -27 282 146 2178 102 0 7 chr15 7710208 7710512 -77985242 - AluSg1 SINE Alu -7 302 1 1868 105 4 15 chr15 7710512 7710639 -77985115 - AluSc SINE Alu -163 146 19 389 281 102 38 chr15 7710648 7710883 -77984871 - LTR33 LTR ERVL -8 513 264 335 250 0 81 chr15 7710955 7711079 -77984675 - LTR33 LTR ERVL -407 114 1 235 329 39 24 chr15 7711265 7711472 -77984282 + HAL1 LINE L1 1170 1379 -1128 336 305 176 11 chr15 7711554 7711741 -77984013 + L1M4 LINE L1 4478 4695 -1451 3588 262 71 42 chr15 7712482 7714043 -77981711 + L1M3c LINE L1 1 1516 -4694 1498 153 4 0 chr15 7714043 7714278 -77981476 + MER46A DNA MER2_type 1 236 0 3588 262 71 42 chr15 7714278 7715187 -77980567 + L1M3c LINE L1 1516 2398 -3812 279 0 0 0 chr15 7715187 7715218 -77980536 + (CA)n Simple_repeat Simple_repeat 2 32 0 3588 262 71 42 chr15 7715218 7715967 -77979787 + L1M3c LINE L1 2398 3076 -3134 2016 130 0 0 chr15 7715967 7716286 -77979468 + AluSx SINE Alu 1 319 0 3588 262 71 42 chr15 7716286 7716813 -77978941 + L1M3c LINE L1 3076 3586 -2624 1437 112 0 0 chr15 7716815 7717012 -77978742 + AluSx SINE Alu 1 197 -115 1080 224 0 4 chr15 7717014 7717264 -77978490 + L1M3c LINE L1 3594 3842 -2368 1379 208 89 30 chr15 7717268 7717604 -77978150 - MSTB2 LTR MaLR -78 379 24 1276 196 159 20 chr15 7717762 7718108 -77977646 + MSTD LTR MaLR 1 394 -2 22 35 0 0 chr15 7718723 7718752 -77977002 + AT_rich Low_complexity Low_complexity 1 29 0 2111 70 0 0 chr15 7719809 7720080 -77975674 - AluSc SINE Alu -9 300 30 202 259 35 17 chr15 7720083 7720141 -77975613 + MER5A DNA MER1_type 128 186 -3 331 68 0 0 chr15 7720801 7720851 -77974903 + MLT2A2 LTR ERVL 1 43 -410 533 82 0 14 chr15 7720968 7721041 -77974713 - AluSq/x SINE Alu -167 145 74 251 175 48 32 chr15 7721857 7721920 -77973834 + C-rich Low_complexity Low_complexity 2 65 0 374 206 7 174 chr15 7722010 7722109 -77973645 + MIR SINE MIR 22 87 -175 186 43 0 0 chr15 7722109 7722132 -77973622 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 374 206 7 174 chr15 7722132 7722187 -77973567 + MIR SINE MIR 87 150 -112 279 0 0 0 chr15 7722580 7722611 -77973143 + (T)n Simple_repeat Simple_repeat 1 31 0 214 197 0 30 chr15 7724209 7724275 -77971479 + G-rich Low_complexity Low_complexity 5 68 0 239 79 26 0 chr15 7725338 7725376 -77970378 + (GA)n Simple_repeat Simple_repeat 2 40 0 225 212 150 53 chr15 7726271 7726384 -77969370 + MIR3 SINE MIR 1 124 -84 457 271 17 0 chr15 7726609 7726727 -77969027 + MIR3 SINE MIR 74 193 -15 298 295 216 48 chr15 7727010 7727237 -77968517 - L3b LINE CR1 -28 1555 1291 416 253 84 45 chr15 7727277 7727431 -77968323 + MIR3 SINE MIR 37 196 -12 563 287 85 49 chr15 7727562 7727809 -77967945 + MIR SINE MIR 3 258 -4 210 37 0 0 chr15 7727933 7727960 -77967794 + (TC)n Simple_repeat Simple_repeat 2 28 0 446 272 44 7 chr15 7728270 7728406 -77967348 + MIR3 SINE MIR 61 201 -7 514 273 15 8 chr15 7728562 7728694 -77967060 + MIR SINE MIR 16 148 -114 510 283 31 13 chr15 7729181 7729340 -77966414 - MIR3 SINE MIR -27 181 20 274 365 10 0 chr15 7729363 7729459 -77966295 + L3b LINE CR1 1290 1386 -197 326 281 144 27 chr15 7729469 7729615 -77966139 - MIR3 SINE MIR -42 166 4 204 313 0 0 chr15 7730061 7730128 -77965626 + L3b LINE CR1 1326 1392 -191 4351 31 2 4 chr15 7730512 7731031 -77964723 + L1PA4 LINE L1 5638 6155 0 220 333 26 0 chr15 7731382 7731460 -77964294 + L3b LINE CR1 1319 1398 -185 1040 147 0 6 chr15 7732094 7732257 -77963497 - AluJb SINE Alu -24 288 127 180 0 0 0 chr15 7732272 7732292 -77963462 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 870 127 0 8 chr15 7732296 7732430 -77963324 - AluJb SINE Alu -179 133 1 803 260 49 29 chr15 7732490 7732736 -77963018 + MIR SINE MIR 2 252 -10 181 149 255 0 chr15 7733888 7733935 -77961819 - MIR SINE MIR -64 144 86 263 307 118 26 chr15 7734241 7734394 -77961360 + MIR SINE MIR 18 184 -78 3021 171 11 4 chr15 7734402 7734950 -77960804 - L1MB7 LINE L1 0 6184 5633 2435 90 3 0 chr15 7734963 7735263 -77960491 - AluSp SINE Alu -12 301 1 635 240 47 42 chr15 7735295 7735487 -77960267 - MIR SINE MIR -34 228 36 188 297 95 0 chr15 7735515 7735589 -77960165 + MIR SINE MIR 176 256 -6 341 287 83 19 chr15 7735755 7735912 -77959842 + MIR3 SINE MIR 42 208 0 419 348 67 10 chr15 7736573 7736789 -77958965 - MIR SINE MIR -20 242 16 579 352 9 13 chr15 7737643 7737873 -77957881 - L3 LINE CR1 -3 1574 1346 260 242 0 0 chr15 7738513 7738579 -77957175 + MIR SINE MIR 78 143 -65 923 175 0 2 chr15 7739823 7740006 -77955748 - AluJo SINE Alu -95 217 3 624 235 56 17 chr15 7740589 7740768 -77954986 - MIR SINE MIR -54 208 23 246 211 158 0 chr15 7741368 7741444 -77954310 + MIR SINE MIR 113 200 -62 217 267 174 0 chr15 7741725 7741811 -77953943 + L2 LINE L2 3175 3275 -38 340 316 171 1 chr15 7742628 7742847 -77952907 - MIR SINE MIR -6 256 6 1517 89 171 4 chr15 7742925 7743182 -77952572 + AluJo SINE Alu 1 300 -2 248 299 35 56 chr15 7745078 7745222 -77950532 + MIR3 SINE MIR 63 203 -5 1923 171 0 3 chr15 7746447 7746756 -77948998 + AluJo SINE Alu 1 308 -4 338 228 41 86 chr15 7748027 7748207 -77947547 + MIR SINE MIR 41 219 -43 355 262 27 86 chr15 7748370 7748557 -77947197 + MER5A DNA MER1_type 7 182 -7 331 243 97 10 chr15 7748997 7749100 -77946654 + MIR3 SINE MIR 11 122 -86 330 45 0 0 chr15 7749623 7749667 -77946087 + (CA)n Simple_repeat Simple_repeat 2 45 0 1720 113 12 4 chr15 7749910 7750157 -77945597 + AluSx SINE Alu 52 300 -12 2200 133 113 18 chr15 7750454 7750845 -77944909 - MSTA LTR MaLR 0 428 1 251 318 182 10 chr15 7750854 7751150 -77944604 - L2 LINE L2 -348 2966 2620 221 346 37 21 chr15 7751330 7751518 -77944236 - L2 LINE L2 -1320 1994 1804 422 157 12 0 chr15 7751520 7751603 -77944151 + (TG)n Simple_repeat Simple_repeat 1 84 0 214 293 73 49 chr15 7752075 7752198 -77943556 - L2 LINE L2 -2141 1173 1048 428 276 285 12 chr15 7752278 7752706 -77943048 - L2 LINE L2 -340 2974 2430 532 328 48 20 chr15 7753047 7753464 -77942290 + L2 LINE L2 2654 3083 -189 336 48 0 0 chr15 7753591 7753633 -77942121 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 301 336 132 7 chr15 7754092 7754315 -77941439 - MIR SINE MIR -6 256 4 3599 165 60 172 chr15 7754432 7754674 -77941080 + L1MB7 LINE L1 3988 4255 -1923 204 40 0 0 chr15 7754674 7754699 -77941055 + (CA)n Simple_repeat Simple_repeat 2 26 0 3599 165 60 172 chr15 7754699 7754722 -77941032 + L1MB7 LINE L1 4255 4279 -1899 2297 129 0 0 chr15 7754722 7755033 -77940721 + AluSx SINE Alu 1 311 -1 3599 165 60 172 chr15 7755033 7755427 -77940327 + L1MB7 LINE L1 4279 4716 -1462 2004 148 7 0 chr15 7755427 7755731 -77940023 + AluJb SINE Alu 1 306 -6 3599 165 60 172 chr15 7755731 7756061 -77939693 + L1MB7 LINE L1 4716 5081 -1097 1176 190 5 0 chr15 7756061 7756256 -77939498 + AluJb SINE Alu 96 291 -21 3599 165 60 172 chr15 7756256 7756460 -77939294 + L1MB7 LINE L1 5081 5154 -1024 2291 111 0 10 chr15 7756460 7756766 -77938988 + AluSq SINE Alu 1 303 -10 3599 165 60 172 chr15 7756766 7757078 -77938676 + L1MB7 LINE L1 5154 5499 -679 * 5702 33 0 0 chr15 7757075 7757775 -77937979 - L1PA4 LINE L1 -1441 4705 4006 7316 28 3 1 chr15 7757775 7759203 -77936551 + L1PA4 LINE L1 4702 6155 0 2975 137 61 78 chr15 7759205 7759509 -77936245 + L1MB7 LINE L1 5494 5802 -382 1910 153 7 0 chr15 7759509 7759803 -77935951 + AluJo SINE Alu 1 296 -16 2975 137 61 78 chr15 7759803 7760201 -77935553 + L1MB7 LINE L1 5802 6184 0 183 219 49 0 chr15 7760810 7760851 -77934903 - L2 LINE L2 -6 3307 3265 390 243 29 10 chr15 7761027 7761145 -77934609 + L1ME LINE L1 5714 5823 -304 664 293 60 0 chr15 7761742 7761957 -77933797 + MIR SINE MIR 5 232 -30 313 183 11 53 chr15 7761969 7762062 -77933692 - FRAM SINE Alu -68 98 41 238 189 0 0 chr15 7762089 7762126 -77933628 - Alu SINE Alu -12 121 85 1627 175 3 21 chr15 7763328 7763613 -77932141 + AluJo SINE Alu 10 289 -23 292 251 24 20 chr15 7763665 7763766 -77931988 + MIR3 SINE MIR 69 170 -38 348 24 0 0 chr15 7765775 7765816 -77929938 + (CA)n Simple_repeat Simple_repeat 1 41 0 1026 217 90 32 chr15 7868306 7868583 -77827171 - MLT1E1 LTR MaLR -9 584 292 618 221 231 5 chr15 7868596 7868791 -77826963 - MER70A LTR ERVL -1 471 233 2155 181 98 65 chr15 7868891 7869139 -77826615 - L1MDa LINE L1 -4423 2117 1879 2196 136 3 3 chr15 7869139 7869441 -77826313 + AluSx SINE Alu 1 302 -10 2155 181 98 65 chr15 7869441 7869721 -77826033 - L1MDa LINE L1 -4661 1879 1564 2495 58 0 23 chr15 7869721 7870030 -77825724 - AluY SINE Alu -9 302 1 2155 181 98 65 chr15 7870030 7870113 -77825641 - L1MDa LINE L1 -4976 1564 1485 1994 183 68 8 chr15 7870859 7871257 -77824497 + MER95 LTR ERV 10 431 0 1537 254 81 22 chr15 7871697 7872242 -77823512 + L1ME3A LINE L1 5052 5563 -607 1144 210 75 42 chr15 7872242 7872575 -77823179 - MER2 DNA MER2_type 0 344 1 1537 254 81 22 chr15 7872575 7872675 -77823079 + L1ME3A LINE L1 5563 5656 -514 1359 205 27 102 chr15 7872675 7873079 -77822675 + MLT1A2 LTR MaLR 1 374 0 1537 254 81 22 chr15 7873079 7873262 -77822492 + L1ME3A LINE L1 5656 5924 -246 352 178 55 27 chr15 7873398 7873471 -77822283 - MER70A LTR ERVL -383 89 15 1448 167 42 14 chr15 7873671 7873958 -77821796 - MLT1E1 LTR MaLR -359 295 1 2180 141 0 0 chr15 7874158 7874462 -77821292 - AluSx SINE Alu -8 304 1 804 228 61 88 chr15 7877384 7877713 -77818041 + MLT2D LTR ERVL 47 366 -48 3386 109 56 8 chr15 7877790 7878323 -77817431 - Tigger3(Golem) DNA MER2_type 0 3029 2471 646 293 78 57 chr15 7878437 7878949 -77816805 - HAL1b LINE L1 -809 539 17 1780 152 4 4 chr15 7880151 7880427 -77815327 - AluJb SINE Alu -36 276 1 1801 199 11 16 chr15 7881693 7882060 -77813694 - MLT1A1 LTR MaLR 0 365 1 2360 265 50 4 chr15 7882210 7882946 -77812808 - L1M4 LINE L1 -3013 3133 2364 2635 175 49 35 chr15 7883058 7883110 -77812644 + L1MB7 LINE L1 5437 5487 -697 2532 60 0 3 chr15 7883110 7883408 -77812346 + AluY SINE Alu 1 297 -14 2635 175 49 35 chr15 7883408 7883931 -77811823 + L1MB7 LINE L1 5487 6020 -164 625 178 6 89 chr15 7883958 7884138 -77811616 - FRAM SINE Alu -11 165 1 522 220 78 0 chr15 7884140 7884281 -77811473 + L1MB8 LINE L1 6022 6173 -5 289 186 0 36 chr15 7884368 7884435 -77811319 - L1M3 LINE L1 -580 5603 5541 415 329 72 50 chr15 7884439 7884856 -77810898 + HAL1b LINE L1 351 776 -572 2262 114 0 0 chr15 7885170 7885467 -77810287 + AluSx SINE Alu 3 299 -13 279 276 9 9 chr15 7885524 7885629 -77810125 + L1 LINE L1 2148 2252 -3894 350 297 84 88 chr15 7885750 7886013 -77809741 + L1 LINE L1 2270 2531 -3615 2311 91 0 0 chr15 7886045 7886341 -77809413 - AluY SINE Alu -15 296 1 321 232 0 14 chr15 7886493 7886562 -77809192 - MLT2C2 LTR ERVL -396 68 1 9573 160 50 56 chr15 7886562 7888222 -77807532 - ERVL-C2 LTR ERVL -8 5756 4108 2153 77 0 3 chr15 7888222 7888508 -77807246 - AluSg SINE Alu -25 285 1 9573 160 50 56 chr15 7888508 7888781 -77806973 - ERVL-C2 LTR ERVL -1656 4108 3835 207 0 0 0 chr15 7888787 7888810 -77806944 + (GA)n Simple_repeat Simple_repeat 1 23 0 336 227 0 0 chr15 7888815 7888903 -77806851 + G-rich Low_complexity Low_complexity 1 88 0 1620 197 49 12 chr15 7888903 7889248 -77806506 - MLT2D LTR ERVL -36 378 21 483 162 20 10 chr15 7889256 7889355 -77806399 - L1MEc LINE L1 -2352 3863 3764 * 1470 243 33 27 chr15 7889354 7889934 -77805820 - L1M4 LINE L1 -2985 3161 2110 1137 268 22 8 chr15 7890041 7890407 -77805347 - L1MEc LINE L1 -3353 2862 2492 286 235 25 12 chr15 7890436 7890517 -77805237 - L1MEc LINE L1 -4699 1697 1616 1279 302 66 30 chr15 7890605 7891586 -77804168 - L1MEd LINE L1 -2990 3139 2123 1374 281 112 35 chr15 7891932 7893249 -77802505 - L1MEd LINE L1 -4584 1726 276 374 196 59 23 chr15 7893911 7894083 -77801671 - MER5C DNA MER1_type 0 324 57 920 268 33 0 chr15 7894316 7894559 -77801195 - MIR SINE MIR -4 258 8 237 238 71 40 chr15 7894632 7894758 -77800996 + MER117 DNA MER1_type 18 147 -50 30700 93 15 7 chr15 7895119 7899751 -77796003 - L1P3 LINE L1 -557 5597 928 307 277 90 17 chr15 7899851 7900060 -77795694 - L1MC4 LINE L1 -135 7739 7462 351 182 0 15 chr15 7900988 7901054 -77794700 + MIR SINE MIR 87 151 -111 341 314 116 25 chr15 7901114 7901356 -77794398 - MLT1L LTR MaLR -38 577 314 225 224 134 67 chr15 7901435 7901614 -77794140 - MLT1L LTR MaLR -424 191 1 1843 149 53 0 chr15 7902471 7902906 -77792848 - L1MA4A LINE L1 -23 6280 5762 527 196 39 73 chr15 7903321 7903500 -77792254 - HAL1 LINE L1 -662 1845 1673 2415 64 0 13 chr15 7903538 7903849 -77791905 + AluY SINE Alu 1 307 -4 944 186 54 50 chr15 7903928 7904030 -77791724 - L1ME LINE L1 -450 6108 6008 2088 121 55 28 chr15 7904030 7904394 -77791360 - THE1C LTR MaLR -1 374 1 944 186 54 50 chr15 7904394 7904512 -77791242 - L1ME LINE L1 -550 6008 5887 2544 213 53 13 chr15 7904512 7904529 -77791225 - L1ME LINE L1 -1801 4739 4724 1238 218 0 36 chr15 7904529 7904777 -77790977 - MER8 DNA MER2_type 0 239 1 2544 213 53 13 chr15 7904777 7905435 -77790319 - L1ME LINE L1 -1816 4724 4037 940 198 37 29 chr15 7905466 7905708 -77790046 - L1ME LINE L1 -4150 2390 2147 7850 105 4 3 chr15 7905808 7906868 -77788886 - L1P3 LINE L1 -5394 1067 7 210 148 93 0 chr15 7907135 7907189 -77788565 + L2 LINE L2 2475 2533 -781 2346 240 45 22 chr15 7907526 7907848 -77787906 + L1ME3 LINE L1 4882 5195 -969 1666 190 0 10 chr15 7907848 7908153 -77787601 + AluJb SINE Alu 1 302 -10 2346 240 45 22 chr15 7908153 7908875 -77786879 + L1ME3 LINE L1 5195 5942 -222 1822 213 81 86 chr15 7908880 7909482 -77786272 + MLT1E2 LTR MaLR 1 600 -25 343 213 75 94 chr15 7909496 7909656 -77786098 + L1ME3 LINE L1 5991 6147 -15 * 648 160 10 2 chr15 7909640 7909779 -77785975 + L1MA4 LINE L1 5791 5930 -244 285 306 62 50 chr15 7909790 7910079 -77785675 + L2 LINE L2 2723 3077 -236 1043 210 63 60 chr15 7911514 7911832 -77783922 + LTR55 LTR ERV 1 319 -229 259 196 0 0 chr15 7911832 7911878 -77783876 - MLT2C1 LTR ERVL 0 397 352 2340 139 106 24 chr15 7911890 7912176 -77783578 + Tigger3b DNA MER2_type 1 262 -2766 549 80 0 0 chr15 7912176 7912251 -77783503 + (TA)n Simple_repeat Simple_repeat 1 75 0 2324 79 7 0 chr15 7912251 7912555 -77783199 - AluY SINE Alu -5 306 1 2340 139 106 24 chr15 7912555 7912690 -77783064 + Tigger3b DNA MER2_type 261 458 -773 9232 197 11 14 chr15 7912790 7914303 -77781451 - L1 LINE L1 -1862 4284 2768 2438 52 0 26 chr15 7914303 7914613 -77781141 + AluY SINE Alu 1 302 -9 225 0 0 0 chr15 7914613 7914638 -77781116 + (TA)n Simple_repeat Simple_repeat 1 25 0 9232 197 11 14 chr15 7914638 7915099 -77780655 - L1 LINE L1 -3376 2770 2315 2025 209 111 3 chr15 7915093 7916499 -77779255 - L1PBa LINE L1 -5159 1704 2 * 331 200 0 0 chr15 7916556 7916611 -77779143 + Tigger5 DNA MER2_type 1 55 -2268 385 203 0 0 chr15 7916613 7916682 -77779072 + Tigger5 DNA MER2_type 2255 2323 0 364 253 81 58 chr15 7916797 7916971 -77778783 - L1ME LINE L1 -5077 993 816 2202 92 14 0 chr15 7916971 7917265 -77778489 - AluSc SINE Alu -11 298 1 21 0 0 0 chr15 7917286 7917307 -77778447 + AT_rich Low_complexity Low_complexity 1 21 0 1734 140 4 0 chr15 7917312 7917569 -77778185 - Tigger3(Golem) DNA MER2_type -1 3028 2771 544 178 0 0 chr15 7917566 7917656 -77778098 - Tigger3(Golem) DNA MER2_type -2887 142 53 * 464 283 94 11 chr15 7918211 7918391 -77777363 - LTR33 LTR ERVL -322 199 5 1936 150 17 0 chr15 7919593 7919893 -77775861 + AluJb SINE Alu 1 305 -7 267 313 61 17 chr15 7921388 7921503 -77774251 - L2 LINE L2 -22 3291 3172 936 279 89 81 chr15 7921669 7922642 -77773112 - L2 LINE L2 -420 2894 1914 229 271 144 8 chr15 7923118 7923236 -77772518 + MIR SINE MIR 117 250 -12 2506 139 50 5 chr15 7923409 7923812 -77771942 - MSTB LTR MaLR -5 421 1 202 285 112 89 chr15 7925080 7925427 -77770327 - L2 LINE L2 -82 3190 2836 251 232 73 12 chr15 7927145 7927227 -77768527 + L2 LINE L2 2683 2769 -545 261 247 32 75 chr15 7927494 7927587 -77768167 + L2 LINE L2 3183 3271 -42 273 98 0 0 chr15 7927592 7927633 -77768121 + (TGGA)n Simple_repeat Simple_repeat 1 41 0 284 280 42 17 chr15 7931258 7931376 -77764378 + LTR33 LTR ERVL 401 521 0 356 200 75 13 chr15 7932136 7932216 -77763538 - MIR SINE MIR -56 152 67 232 171 45 11 chr15 7932875 7932963 -77762791 + (CA)n Simple_repeat Simple_repeat 2 92 0 301 270 35 26 chr15 7932966 7933081 -77762673 + (CATATA)n Simple_repeat Simple_repeat 4 119 0 188 178 0 22 chr15 7933082 7933127 -77762627 + (CA)n Simple_repeat Simple_repeat 1 44 0 449 251 34 23 chr15 7933185 7933360 -77762394 + (CATA)n Simple_repeat Simple_repeat 4 180 0 201 259 0 28 chr15 7933372 7933480 -77762274 + (CA)n Simple_repeat Simple_repeat 1 105 0 234 116 0 0 chr15 7935389 7935432 -77760322 + (CA)n Simple_repeat Simple_repeat 1 43 0 370 173 95 19 chr15 7935640 7935746 -77760008 - FLAM SINE Alu -2 131 66 1485 258 37 52 chr15 7935752 7936314 -77759440 + MER74B LTR ERVL 69 622 0 875 199 86 0 chr15 7936314 7936500 -77759254 - MER58A DNA MER1_type -4 220 19 326 349 98 34 chr15 7937770 7938005 -77757749 + HAL1 LINE L1 1455 1704 -803 497 309 19 40 chr15 7938327 7938703 -77757051 + L1ME4a LINE L1 2155 2522 -3624 355 315 59 31 chr15 7938825 7939190 -77756564 + L1ME4a LINE L1 4100 4616 -1530 23 33 0 0 chr15 7939499 7939529 -77756225 + AT_rich Low_complexity Low_complexity 1 30 0 2581 69 3 0 chr15 7939531 7939835 -77755919 + AluY SINE Alu 1 305 -6 225 248 28 9 chr15 7940032 7940141 -77755613 + L1ME4a LINE L1 5283 5393 -753 2694 113 23 57 chr15 7940194 7940635 -77755119 + MSTB LTR MaLR 1 426 0 9022 152 38 15 chr15 7940653 7942230 -77753524 + MSTB-int LTR MaLR 37 1650 -1 2589 160 9 21 chr15 7942231 7942662 -77753092 + MSTB LTR MaLR 1 426 0 302 291 92 78 chr15 7942727 7943033 -77752721 + L1ME4a LINE L1 5578 5887 -234 290 249 55 73 chr15 7943081 7943246 -77752508 + L1ME4a LINE L1 5960 6121 0 397 349 62 19 chr15 7943248 7943506 -77752248 + L3 LINE CR1 1110 1378 -199 411 21 0 0 chr15 7944059 7944107 -77751647 + (CA)n Simple_repeat Simple_repeat 1 48 0 1195 123 0 27 chr15 7944581 7944800 -77750954 + L1MA4 LINE L1 6078 6290 -10 26 0 0 0 chr15 7944825 7944851 -77750903 + AT_rich Low_complexity Low_complexity 1 26 0 403 363 71 8 chr15 7945064 7945304 -77750450 + MIR SINE MIR 8 262 0 2137 155 0 0 chr15 7945604 7945914 -77749840 + AluSx SINE Alu 1 310 -2 534 357 32 47 chr15 7946022 7946624 -77749130 + L1MEc LINE L1 1948 2489 -3726 1856 193 22 29 chr15 7946635 7947044 -77748710 + MER74A LTR ERVL 1 406 -152 381 239 101 14 chr15 7947213 7947351 -77748403 + MER74B LTR ERVL 473 622 0 842 293 53 20 chr15 7947491 7947846 -77747908 - MLT1I LTR MaLR -33 376 10 2151 109 25 41 chr15 7948001 7948721 -77747033 + MER4A LTR ERV1 1 779 0 4563 147 17 40 chr15 7948784 7949660 -77746094 + MER4D LTR ERV1 2 857 -46 8000 104 24 36 chr15 7949781 7951037 -77744717 - THE1B-int LTR MaLR -336 1244 4 2385 125 25 0 chr15 7951037 7951390 -77744364 - THE1B LTR MaLR -2 362 1 2174 128 31 31 chr15 7952025 7952383 -77743371 + THE1B LTR MaLR 1 358 -6 235 259 0 0 chr15 7954329 7954383 -77741371 + (TA)n Simple_repeat Simple_repeat 1 54 0 343 299 84 13 chr15 7955066 7955220 -77740534 + MIR3 SINE MIR 7 171 -37 1287 291 217 15 chr15 7955375 7955964 -77739790 + L2 LINE L2 1976 2445 -868 2367 82 3 16 chr15 7955964 7956268 -77739486 + AluSg SINE Alu 1 300 -10 1287 291 217 15 chr15 7956268 7956591 -77739163 + L2 LINE L2 2445 3068 -245 824 262 32 41 chr15 7956591 7956935 -77738819 + L1ME3A LINE L1 5611 5951 -219 349 207 157 41 chr15 7957235 7957412 -77738342 - MLT1J1 LTR MaLR -51 460 207 326 306 19 0 chr15 7957608 7957716 -77738038 - MLT1J2 LTR MaLR -340 110 1 416 305 67 63 chr15 7957722 7957896 -77737858 + L1ME4a LINE L1 5877 6054 -67 1806 158 10 29 chr15 7957896 7958206 -77737548 - AluJb SINE Alu -4 308 5 416 305 67 63 chr15 7958206 7958254 -77737500 + L1ME4a LINE L1 6054 6100 -21 1913 178 138 10 chr15 7958793 7959198 -77736556 + LTR32 LTR ERVL 15 471 0 2139 128 20 0 chr15 7959643 7959940 -77735814 + AluSx SINE Alu 1 303 -9 2281 58 3 88 chr15 7959942 7960272 -77735482 + AluY SINE Alu 1 302 -9 213 94 0 0 chr15 7960463 7960495 -77735259 + (TAA)n Simple_repeat Simple_repeat 1 32 0 1724 267 57 25 chr15 7960751 7961473 -77734281 + L1MC3 LINE L1 5856 6600 -1185 1565 181 45 3 chr15 7961532 7961846 -77733908 + MSTB LTR MaLR 98 424 -2 720 205 19 0 chr15 7961849 7962005 -77733749 + L1MC3 LINE L1 6616 6774 -1011 363 288 107 0 chr15 7963104 7963281 -77732473 - L1MC/D LINE L1 -2010 5798 5603 573 262 48 32 chr15 7963737 7964066 -77731688 + L1M4b LINE L1 -254 119 -6165 1493 137 46 76 chr15 7964123 7964452 -77731302 + MER2 DNA MER2_type 25 343 -2 1518 185 82 142 chr15 7964455 7965686 -77730068 + L1M4b LINE L1 377 1478 -4906 195 42 0 0 chr15 7965686 7965710 -77730044 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1518 185 82 142 chr15 7965710 7965821 -77729933 + L1M4b LINE L1 1478 1594 -4790 2397 98 0 0 chr15 7965823 7966119 -77729635 + AluSx SINE Alu 1 296 -16 260 210 0 0 chr15 7967767 7967829 -77727925 + A-rich Low_complexity Low_complexity 1 62 0 829 155 8 0 chr15 7967866 7967995 -77727759 + FLAM_C SINE Alu 1 130 -13 344 249 38 121 chr15 7968003 7968349 -77727405 + L1M4b LINE L1 1645 2112 -4451 367 336 28 65 chr15 7968379 7968626 -77727128 + L1MEc LINE L1 1734 1971 -4425 197 161 0 0 chr15 7969564 7969595 -77726159 - L2 LINE L2 -18 3254 3224 197 246 92 0 chr15 7969597 7969662 -77726092 - MIR SINE MIR -92 170 100 1771 197 101 5 chr15 7969662 7970099 -77725655 - MLT2B1 LTR ERVL 0 520 42 3774 148 39 0 chr15 7970945 7971592 -77724162 - L1PB4 LINE L1 -1 6155 5484 5513 196 12 11 chr15 7971592 7972794 -77722960 - L1PB4 LINE L1 -1024 5122 3919 1166 139 0 0 chr15 7972790 7972984 -77722770 + L1PB4 LINE L1 3725 3918 -2228 * 328 278 167 17 chr15 7975442 7975622 -77720132 + L2 LINE L2 3014 3220 -93 182 71 0 71 chr15 7979092 7979134 -77716620 + (GGAGAA)n Simple_repeat Simple_repeat 5 43 0 281 129 0 32 chr15 7979637 7979699 -77716055 + (CCG)n Simple_repeat Simple_repeat 3 62 0 42 71 0 0 chr15 7979781 7979865 -77715889 + GC_rich Low_complexity Low_complexity 1 84 0 21 0 0 0 chr15 7980041 7980062 -77715692 + GC_rich Low_complexity Low_complexity 1 21 0 28 71 0 0 chr15 7980090 7980146 -77715608 + GC_rich Low_complexity Low_complexity 1 56 0 2393 101 0 3 chr15 7980562 7980869 -77714885 + AluSx SINE Alu 1 306 -6 377 322 55 39 chr15 7980869 7981113 -77714641 + L1MEc LINE L1 2728 2978 -3237 365 214 43 43 chr15 7981812 7981929 -77713825 + MLT1G1 LTR MaLR 477 593 -2 242 237 53 79 chr15 7982018 7982132 -77713622 + MIR SINE MIR 134 244 -18 1599 137 63 3 chr15 7982277 7982562 -77713192 + AluJo SINE Alu 1 302 -10 1885 68 129 4 chr15 7982563 7982827 -77712927 + AluSg1 SINE Alu 1 297 -12 1416 104 62 78 chr15 7983771 7983820 -77711934 + L1MA8 LINE L1 5988 6036 -255 2526 62 7 0 chr15 7983820 7984124 -77711630 + AluSp SINE Alu 1 306 -7 1416 104 62 78 chr15 7984124 7984383 -77711371 + L1MA8 LINE L1 6036 6291 0 1174 182 146 3 chr15 7984991 7985323 -77710431 - MER47B DNA MER2_type -1 417 1 181 158 70 70 chr15 7985548 7985605 -77710149 + MIR SINE MIR 19 75 -133 295 286 107 58 chr15 7985704 7985910 -77709844 + MLT1K LTR MaLR 329 544 -44 201 113 16 32 chr15 7986367 7986429 -77709325 + (CGCGG)n Simple_repeat Simple_repeat 4 64 0 25 0 0 0 chr15 7988612 7988637 -77707117 + AT_rich Low_complexity Low_complexity 1 25 0 1496 226 54 41 chr15 7991566 7992030 -77703724 + L2 LINE L2 2843 3312 -1 1980 89 25 70 chr15 7994479 7994806 -77700948 - AluSx SINE Alu 0 312 1 2164 122 44 33 chr15 7994883 7995243 -77700511 - THE1B LTR MaLR 0 364 1 249 325 13 13 chr15 7995668 7995745 -77700009 - MIR SINE MIR -185 77 1 235 241 19 0 chr15 7996125 7996179 -77699575 + MIR SINE MIR 87 141 -67 619 273 171 24 chr15 7996238 7996572 -77699182 - LTR50 LTR ERVL -26 769 387 2847 276 86 56 chr15 7996761 7998288 -77697466 - ERVL LTR ERVL -321 5443 3871 1044 159 17 82 chr15 7998291 7998399 -77697355 - MER20 DNA MER1_type 0 219 132 2774 175 35 14 chr15 7998399 7998908 -77696846 + MLT2B1 LTR ERVL 1 520 0 1044 159 17 82 chr15 7998908 7999032 -77696722 - MER20 DNA MER1_type -87 132 2 1161 336 90 5 chr15 7999048 7999690 -77696064 - ERVL LTR ERVL -1904 3860 3164 4958 123 54 26 chr15 7999943 8000991 -77694763 + MER52C LTR ERV1 1 1278 0 1512 301 62 53 chr15 8000998 8001271 -77694483 - ERVL LTR ERVL -2944 2820 2551 2173 111 0 0 chr15 8001271 8001569 -77694185 + AluSx SINE Alu 1 298 -14 1512 301 62 53 chr15 8001569 8002157 -77693597 - ERVL LTR ERVL -3213 2551 1952 1724 249 89 31 chr15 8002455 8002930 -77692824 - L1ME2 LINE L1 -9 6155 5638 1400 118 107 48 chr15 8002930 8003075 -77692679 + AluSx SINE Alu 1 136 -176 2142 89 3 3 chr15 8003075 8003367 -77692387 + AluSg1 SINE Alu 1 292 -17 1400 118 107 48 chr15 8003367 8003510 -77692244 + AluSx SINE Alu 136 306 -6 1724 249 89 31 chr15 8003510 8003621 -77692133 - L1ME2 LINE L1 -526 5638 5535 194 310 70 10 chr15 8004318 8004418 -77691336 - L2 LINE L2 -3 3269 3164 212 284 91 11 chr15 8004603 8004691 -77691063 - MIR SINE MIR -140 122 28 2767 160 67 24 chr15 8005841 8006355 -77689399 - MER21A LTR ERV1 0 931 272 2536 55 0 0 chr15 8006355 8006664 -77689090 - AluY SINE Alu -2 309 1 2767 160 67 24 chr15 8006664 8006949 -77688805 - MER21A LTR ERV1 -659 272 1 23 0 0 0 chr15 8007090 8007113 -77688641 + AT_rich Low_complexity Low_complexity 1 23 0 1644 153 122 68 chr15 8007463 8007874 -77687880 - LTR12 LTR ERV1 -229 485 53 267 231 0 0 chr15 8007874 8007926 -77687828 - LTR30 LTR ERV1 -670 52 1 1546 262 53 31 chr15 8008007 8008375 -77687379 - LTR19-int LTR ERV1 -3744 3152 2769 2264 63 0 13 chr15 8008375 8008674 -77687080 - AluY SINE Alu -15 296 2 1546 262 53 31 chr15 8008674 8008794 -77686960 - LTR19-int LTR ERV1 -4127 2769 2653 622 148 142 6 chr15 8008984 8009153 -77686601 - LTR19-int LTR ERV1 -2321 3265 3074 2184 88 0 7 chr15 8009316 8009611 -77686143 - AluSc SINE Alu -16 293 1 305 273 118 0 chr15 8009679 8009789 -77685965 + MER94 DNA DNA 12 134 0 4260 148 19 3 chr15 8010523 8011191 -77684563 + MER54B LTR ERVL 4 682 -111 797 232 0 4 chr15 8011736 8012018 -77683736 + (TGGA)n Simple_repeat Simple_repeat 1 280 0 588 212 11 6 chr15 8012043 8012222 -77683532 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 250 286 18 0 chr15 8012289 8012345 -77683409 + L2 LINE L2 3246 3302 -11 385 230 147 9 chr15 8013163 8013340 -77682414 + L1MC4a LINE L1 6441 6604 -1204 1567 238 86 52 chr15 8013394 8013452 -77682302 + L1MC4 LINE L1 6870 6925 -1117 1920 149 10 0 chr15 8013452 8013761 -77681993 + AluJo SINE Alu 1 312 0 1567 238 86 52 chr15 8013761 8014548 -77681206 + L1MC4 LINE L1 6925 7902 -140 1372 105 0 11 chr15 8014632 8014822 -77680932 + AluSq SINE Alu 1 188 -125 4065 115 3 2 chr15 8014823 8015413 -77680341 + LTR10C LTR ERV1 1 591 0 563 332 103 19 chr15 8015415 8015677 -77680077 + LTR10C-int LTR ERV1 6 289 -6360 271 200 93 53 chr15 8015940 8016015 -77679739 + LTR10C-int LTR ERV1 528 605 -6044 320 209 55 66 chr15 8016016 8016107 -77679647 + L1MC4 LINE L1 6613 6702 -1340 208 175 25 0 chr15 8016108 8016148 -77679606 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 322 253 0 74 chr15 8016157 8016252 -77679502 + L1MC4 LINE L1 6615 6702 -1340 312 286 0 33 chr15 8016273 8016364 -77679390 + L1MC4 LINE L1 6615 6702 -1340 308 300 22 11 chr15 8016396 8016486 -77679268 + L1MC4 LINE L1 6614 6704 -1338 320 217 22 60 chr15 8016499 8016640 -77679114 + L1MC4 LINE L1 6558 6646 -1139 307 235 0 98 chr15 8016588 8016690 -77679064 - L1MC4 LINE L1 -1339 6703 6612 * 312 242 33 55 chr15 8016655 8016746 -77679008 + L1MC4 LINE L1 6614 6702 -1340 301 258 11 54 chr15 8016753 8016846 -77678908 + L1MC4 LINE L1 6614 6702 -1340 294 148 0 37 chr15 8016847 8016928 -77678826 + (CATATA)n Simple_repeat Simple_repeat 2 79 0 340 223 32 64 chr15 8016928 8017022 -77678732 + L1MC4 LINE L1 6614 6704 -1338 224 301 0 0 chr15 8017484 8017557 -77678197 + A-rich Low_complexity Low_complexity 1 73 0 328 120 189 74 chr15 8017570 8017745 -77678009 + HERVKC4 LTR ERVK 2609 2803 -2459 * 2132 131 64 43 chr15 8017635 8017916 -77677838 + Harlequin LTR ERV1 1896 2170 -4726 2141 96 3 3 chr15 8017916 8018208 -77677546 + AluY SINE Alu 1 292 -19 2132 131 64 43 chr15 8018208 8018489 -77677265 + Harlequin LTR ERV1 2170 2470 -4426 473 306 19 0 chr15 8018716 8018873 -77676881 + L1MCc LINE L1 264 423 -6000 268 288 14 0 chr15 8018977 8019050 -77676704 - L1MCc LINE L1 -5507 916 843 2573 253 59 49 chr15 8019067 8020396 -77675358 + L1MCc LINE L1 1192 2507 -4615 2112 111 3 16 chr15 8020396 8020703 -77675051 + AluSx SINE Alu 1 303 -9 2573 253 59 49 chr15 8020703 8021031 -77674723 + L1MCc LINE L1 2507 2830 -4292 1470 129 37 0 chr15 8021031 8021248 -77674506 + AluSx SINE Alu 1 225 -87 2573 253 59 49 chr15 8021248 8021348 -77674406 + L1MCc LINE L1 2830 3177 -3945 1987 132 3 3 chr15 8022125 8022420 -77673334 - AluSx SINE Alu -17 295 1 223 232 214 36 chr15 8022700 8022812 -77672942 + MIR SINE MIR 119 250 -12 888 256 156 14 chr15 8022965 8023325 -77672429 + MER20B DNA MER1_type 350 760 -23 215 111 56 0 chr15 8025872 8025908 -77669846 - MER91B DNA MER1_type -129 61 24 777 245 21 21 chr15 8026015 8026203 -77669551 - MER58A DNA MER1_type 0 224 37 274 364 26 7 chr15 8027932 8028086 -77667668 + MIR SINE MIR 92 248 -14 480 113 0 113 chr15 8029738 8029844 -77665910 - AluSg/x SINE Alu -1 308 215 3611 130 37 0 chr15 8029844 8030414 -77665340 - LTR10C LTR ERV1 0 591 1 2642 303 65 28 chr15 8030459 8030619 -77665135 - HERVI LTR ERV1 -79 7706 7553 2317 52 38 0 chr15 8030619 8030908 -77664846 - AluY SINE Alu -11 300 1 2642 303 65 28 chr15 8030908 8031936 -77663818 - HERVI LTR ERV1 -232 7553 6474 4578 146 21 8 chr15 8032039 8032697 -77663057 + L1P LINE L1 3917 4588 -1558 2760 93 3 11 chr15 8032697 8033064 -77662690 + THE1B LTR MaLR 1 364 0 4578 146 21 8 chr15 8033064 8033181 -77662573 + L1P LINE L1 4588 4702 -1444 360 346 23 8 chr15 8033299 8033429 -77662325 + GA-rich Low_complexity Low_complexity 5 136 0 1096 100 0 17 chr15 8033430 8033610 -77662144 + (GGAA)n Simple_repeat Simple_repeat 1 177 0 11608 24 1 1 chr15 8034535 8035886 -77659868 + L1P LINE L1 3537 4888 -1258 6506 103 1 15 chr15 8035986 8036989 -77658765 + L1P LINE L1 2529 3517 -2629 2506 258 74 14 chr15 8038701 8039638 -77656116 + L1M1 LINE L1 2262 3254 -4311 526 157 11 0 chr15 8039632 8039721 -77656033 + L1PBa LINE L1 1 90 -6773 * 289 343 124 29 chr15 8039832 8040243 -77655511 - L2 LINE L2 -19 3253 2804 238 374 131 14 chr15 8040361 8040711 -77655043 - L2 LINE L2 -645 2669 2279 1170 113 0 6 chr15 8041158 8041326 -77654428 - AluSg/x SINE Alu -8 302 136 233 160 0 20 chr15 8041378 8041428 -77654326 + A-rich Low_complexity Low_complexity 2 50 0 1757 156 96 28 chr15 8041670 8042023 -77653731 - MLT1B LTR MaLR -11 379 3 1477 189 84 112 chr15 8042027 8042452 -77653302 + LTR8 LTR ERV1 4 375 -316 527 159 9 28 chr15 8043090 8043197 -77652557 - MER53 DNA DNA -82 107 3 2988 80 0 3 chr15 8044070 8044446 -77651308 - THE1C LTR MaLR 0 375 1 5878 103 4 9 chr15 8044446 8045254 -77650500 - THE1C-int LTR MaLR 0 1580 777 716 268 59 75 chr15 8045836 8046280 -77649474 + MLT1J LTR MaLR 24 511 0 5641 61 12 10 chr15 8046545 8047265 -77648489 - Harlequin LTR ERV1 -5912 984 263 2097 107 20 57 chr15 8047245 8047599 -77648155 - Harlequin LTR ERV1 -6497 399 59 * 2494 50 0 7 chr15 8047771 8048070 -77647684 + AluY SINE Alu 2 298 -13 1294 147 14 9 chr15 8048090 8048301 -77647453 + AluJb SINE Alu 85 296 -16 2105 112 0 10 chr15 8048603 8048907 -77646847 - AluSx SINE Alu -11 301 1 1354 209 0 0 chr15 8049240 8049498 -77646256 - L1PB4 LINE L1 -12 6144 5887 1095 203 16 32 chr15 8050199 8050280 -77645474 + L1 LINE L1 4476 4557 -1589 2357 77 27 0 chr15 8050280 8050578 -77645176 + AluSp SINE Alu 1 306 -7 1095 203 16 32 chr15 8050578 8050747 -77645007 + L1 LINE L1 4557 4722 -1424 13947 53 3 14 chr15 8050858 8052562 -77643192 - Harlequin LTR ERV1 -2517 4379 2693 2676 77 0 0 chr15 8054114 8054451 -77641303 - L1MA2 LINE L1 -370 5934 5598 2107 92 7 50 chr15 8054454 8054787 -77640967 - AluSx SINE Alu 0 312 1 378 229 31 0 chr15 8054949 8055045 -77640709 - MER103 DNA DNA -9 157 59 706 207 94 48 chr15 8055146 8055510 -77640244 + MLT1C LTR MaLR 5 458 -9 1805 77 28 4 chr15 8055896 8056144 -77639610 + L1PA13 LINE L1 5908 6161 -2 1112 146 131 16 chr15 8056214 8056485 -77639269 + MSTA LTR MaLR 91 428 0 183 244 44 0 chr15 8056923 8056968 -77638786 + MIR SINE MIR 72 118 -90 213 39 0 0 chr15 8057647 8057673 -77638081 + (TAA)n Simple_repeat Simple_repeat 2 27 0 3799 107 23 12 chr15 8059669 8059858 -77635896 + LTR43 LTR ERV1 25 211 -391 1881 128 7 7 chr15 8059858 8060140 -77635614 + AluSx SINE Alu 16 297 -15 3799 107 23 12 chr15 8060140 8060521 -77635233 + LTR43 LTR ERV1 211 601 -1 441 246 159 34 chr15 8060791 8061055 -77634699 - L1MCa LINE L1 -2572 3854 3558 2242 252 59 25 chr15 8061064 8061268 -77634486 - L1MCa LINE L1 -3599 2827 2631 396 0 0 0 chr15 8061268 8061312 -77634442 + (TG)n Simple_repeat Simple_repeat 2 45 0 2242 252 59 25 chr15 8061312 8062234 -77633520 - L1MCa LINE L1 -3795 2631 1516 253 288 91 15 chr15 8062386 8062518 -77633236 + MIR SINE MIR 12 153 -109 398 257 176 93 chr15 8062527 8062935 -77632819 - LTR67 LTR ERVL -2 555 114 3611 232 66 28 chr15 8063625 8064504 -77631250 + L1MEc LINE L1 1856 2774 -3441 2464 158 11 34 chr15 8064504 8064946 -77630808 + MSTB1 LTR MaLR 1 432 0 3611 232 66 28 chr15 8064946 8065489 -77630265 + L1MEc LINE L1 2774 3295 -2920 2627 223 29 51 chr15 8066185 8067184 -77628570 - L1M4c LINE L1 -4519 1794 800 745 157 45 8 chr15 8067195 8067329 -77628425 + MSTA LTR MaLR 233 371 -57 893 101 25 0 chr15 8067354 8067473 -77628281 - FLAM_C SINE Alu -11 122 1 2187 106 0 3 chr15 8068122 8068427 -77627327 - AluSx SINE Alu 0 304 1 1556 197 37 34 chr15 8068427 8068777 -77626977 - MSTD LTR MaLR -43 353 3 1270 234 55 2 chr15 8068950 8069348 -77626406 - L1M4 LINE L1 -2098 4284 3866 1228 209 41 34 chr15 8069771 8070063 -77625691 - MLT1A2 LTR MaLR -78 296 3 274 306 19 37 chr15 8070201 8070472 -77625282 + L1M4 LINE L1 2237 2502 -3644 213 39 0 0 chr15 8070872 8070898 -77624856 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1934 106 26 4 chr15 8070898 8071163 -77624591 + AluSx SINE Alu 1 271 -41 536 225 125 21 chr15 8071711 8071880 -77623874 + MLT1J1 LTR MaLR 21 204 -246 2246 106 27 0 chr15 8071881 8072182 -77623572 - AluSx SINE Alu -3 309 1 274 262 143 60 chr15 8072453 8072789 -77622965 - L2 LINE L2 -543 2771 2408 2457 84 0 0 chr15 8072858 8073154 -77622600 - AluSq SINE Alu -17 296 1 374 216 55 80 chr15 8073156 8073267 -77622487 - L1M4 LINE L1 -4790 1594 1482 203 32 65 0 chr15 8073267 8073298 -77622456 + T-rich Low_complexity Low_complexity 3 35 0 374 216 55 80 chr15 8073298 8073496 -77622258 - L1M4 LINE L1 -4902 1482 1306 475 80 13 13 chr15 8076322 8076397 -77619357 + L1PA13 LINE L1 6082 6156 -7 231 376 50 0 chr15 8077125 8077226 -77618528 + MIR SINE MIR 20 125 -137 641 169 14 21 chr15 8077472 8077614 -77618140 + L1MA4A LINE L1 5983 6123 -180 401 223 0 21 chr15 8077617 8077711 -77618043 + L1MA4A LINE L1 6189 6280 -23 184 75 25 25 chr15 8079915 8079955 -77615799 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 267 303 0 20 chr15 8080613 8080712 -77615042 - MIR3 SINE MIR -11 197 101 2223 108 0 0 chr15 8081078 8081373 -77614381 - AluSx SINE Alu -17 295 1 770 265 49 73 chr15 8082086 8082539 -77613215 + L2 LINE L2 2872 3313 0 26 0 0 0 chr15 8082546 8082572 -77613182 + AT_rich Low_complexity Low_complexity 1 26 0 694 36 0 0 chr15 8082665 8082749 -77613005 - L1PA5 LINE L1 -1 6153 6070 2351 88 3 0 chr15 8082750 8083047 -77612707 - AluSp SINE Alu -15 298 1 420 314 35 6 chr15 8083517 8083689 -77612065 - MIR SINE MIR -6 256 80 691 286 105 58 chr15 8084394 8084984 -77610770 - HAL1 LINE L1 -707 1800 1183 208 184 81 35 chr15 8085397 8085484 -77610270 + (CTGGGG)n Simple_repeat Simple_repeat 4 94 0 11852 65 15 0 chr15 8085924 8087398 -77608356 + Harlequin LTR ERV1 5401 6896 0 1690 203 14 23 chr15 8087398 8087856 -77607898 + LTR2B LTR ERV1 1 490 0 1477 225 37 44 chr15 8089100 8089160 -77606594 + L1M4 LINE L1 16 75 -6467 222 37 0 0 chr15 8089160 8089187 -77606567 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1477 225 37 44 chr15 8089187 8089535 -77606219 + L1M4 LINE L1 75 421 -6121 603 240 0 0 chr15 8089560 8089685 -77606069 + L1M4 LINE L1 1085 1209 -5333 528 233 100 7 chr15 8089726 8089876 -77605878 + MER103 DNA DNA 1 164 -2 7906 19 0 4 chr15 8090035 8090979 -77604775 + L1HS LINE L1 5216 6155 0 4545 150 13 29 chr15 8090975 8091349 -77604405 + L1M4 LINE L1 1869 2248 -4396 * 1885 146 53 0 chr15 8091349 8091630 -77604124 + AluSx SINE Alu 1 296 -16 4545 150 13 29 chr15 8091630 8092104 -77603650 + L1M4 LINE L1 2248 3145 -3499 1914 71 71 0 chr15 8092590 8092829 -77602925 + AluSq SINE Alu 1 256 -57 371 201 169 58 chr15 8094361 8094500 -77601254 - MIR3 SINE MIR -43 165 31 260 154 19 0 chr15 8094786 8094838 -77600916 + (CCCCG)n Simple_repeat Simple_repeat 1 53 0 3157 80 2 88 chr15 8095026 8095526 -77600228 + LTR8 LTR ERV1 1 457 -234 607 272 96 27 chr15 8096962 8097242 -77598512 + L1ME4a LINE L1 5174 5433 -729 2266 107 0 0 chr15 8097242 8097532 -77598222 - AluSx SINE Alu -22 290 1 607 272 96 27 chr15 8097532 8097751 -77598003 + L1ME4a LINE L1 5433 5704 -458 831 174 0 0 chr15 8097754 8097886 -77597868 - AluSg/x SINE Alu -8 304 173 2036 122 14 0 chr15 8098270 8098565 -77597189 - AluSq SINE Alu -14 299 1 481 309 92 32 chr15 8099132 8099414 -77596340 + L2 LINE L2 2532 2830 -484 893 279 14 9 chr15 8099794 8100013 -77595741 - LTR16C LTR ERVL 0 491 272 260 178 22 0 chr15 8100046 8100091 -77595663 + LTR16C LTR ERVL 199 244 -247 367 191 36 20 chr15 8100228 8100378 -77595376 - L1M3 LINE L1 -634 5537 5323 840 251 70 18 chr15 8100478 8100808 -77594946 + L1M4 LINE L1 4446 4792 -1354 305 225 25 38 chr15 8100820 8100900 -77594854 - MER5B DNA MER1_type -98 80 2 572 295 116 68 chr15 8101776 8102413 -77593341 - L3 LINE CR1 -259 1318 651 2594 55 0 7 chr15 8103603 8103913 -77591841 + AluY SINE Alu 1 308 -3 279 247 50 111 chr15 8104002 8104141 -77591613 + L1ME4a LINE L1 5854 5969 -152 2124 86 32 4 chr15 8104141 8104420 -77591334 + AluSx SINE Alu 1 287 -25 279 247 50 111 chr15 8104420 8104559 -77591195 + L1ME4a LINE L1 5969 6115 -6 369 150 17 0 chr15 8104872 8104932 -77590822 + MLT1A2 LTR MaLR 1 61 -313 1068 257 115 41 chr15 8105246 8105733 -77590021 - LTR33A LTR ERVL 0 523 1 27 0 0 0 chr15 8105911 8105938 -77589816 + AT_rich Low_complexity Low_complexity 1 27 0 670 271 4 62 chr15 8106140 8106384 -77589370 - MLT1K LTR MaLR -3 585 356 266 259 75 75 chr15 8106402 8106576 -77589178 - MLT1K LTR MaLR -359 229 56 1140 170 57 145 chr15 8106653 8106971 -77588783 + AluJb SINE Alu 1 290 -12 222 348 0 65 chr15 8107035 8107140 -77588614 + L2 LINE L2 2487 2580 -734 835 204 122 5 chr15 8107140 8107336 -77588418 - MER20B DNA MER1_type 0 219 1 222 348 0 65 chr15 8107336 8107385 -77588369 + L2 LINE L2 2580 2631 -683 243 0 0 0 chr15 8107391 8107418 -77588336 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1640 171 0 0 chr15 8107514 8107759 -77587995 - AluSx SINE Alu -67 245 1 2024 142 0 43 chr15 8107928 8108252 -77587502 - AluSx SINE Alu -2 310 1 197 332 53 91 chr15 8108330 8108517 -77587237 + L2 LINE L2 2872 3051 -221 184 360 56 11 chr15 8108755 8108844 -77586910 + MIR SINE MIR 61 153 -109 2588 195 9 26 chr15 8109143 8109681 -77586073 + L1MB8 LINE L1 5542 6070 -108 1908 132 0 4 chr15 8109681 8109953 -77585801 + AluSx SINE Alu 1 271 -41 1243 183 12 74 chr15 8110055 8110378 -77585376 + MER83B-int LTR ERV1 2930 3232 -2714 1853 197 52 65 chr15 8110391 8110793 -77584961 + MER83B-int LTR ERV1 2886 3269 -1611 1883 138 0 31 chr15 8110793 8111112 -77584642 + AluSx SINE Alu 1 310 0 1853 197 52 65 chr15 8111112 8111246 -77584508 + MER83B-int LTR ERV1 3269 3403 -1477 1549 210 16 57 chr15 8111310 8111682 -77584072 + MLT1A1 LTR MaLR 1 357 -8 7272 134 33 12 chr15 8111799 8112640 -77583114 + Tigger1 DNA MER2_type 1 877 -1541 2297 125 0 3 chr15 8112640 8112952 -77582802 + AluSq SINE Alu 1 311 -2 7272 134 33 12 chr15 8112952 8113309 -77582445 + Tigger1 DNA MER2_type 877 1225 -1193 614 286 95 8 chr15 8113440 8113692 -77582062 - ERVL LTR ERVL -667 5097 4824 538 295 66 0 chr15 8113808 8113974 -77581780 - ERVL LTR ERVL -1089 4675 4499 315 260 0 0 chr15 8114670 8114743 -77581011 - L1M1 LINE L1 -4193 3372 3300 11055 204 34 20 chr15 8114800 8115156 -77580598 - L1PB2 LINE L1 -3 6148 5799 267 31 0 0 chr15 8115156 8115188 -77580566 + (TG)n Simple_repeat Simple_repeat 2 33 0 11055 204 34 20 chr15 8115188 8116302 -77579452 - L1PB2 LINE L1 -352 5799 4703 2200 142 39 25 chr15 8116302 8116661 -77579093 + THE1B LTR MaLR 1 364 0 11055 204 34 20 chr15 8116661 8116939 -77578815 - L1PB2 LINE L1 -1448 4703 4431 293 0 0 26 chr15 8116939 8116977 -77578777 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 11055 204 34 20 chr15 8116977 8117198 -77578556 - L1PB2 LINE L1 -1720 4431 4215 9252 58 3 2 chr15 8117198 8118266 -77577488 - MER11C LTR ERVK -2 1069 1 11055 204 34 20 chr15 8118266 8119812 -77575942 - L1PB2 LINE L1 -1936 4215 2552 340 285 10 67 chr15 8120300 8120493 -77575261 + L1ME4a LINE L1 5783 5964 -157 237 279 100 56 chr15 8120809 8121078 -77574676 + L1 LINE L1 4736 5016 -1130 516 225 196 35 chr15 8121482 8121632 -77574122 - AluJo SINE Alu -15 297 114 206 81 27 0 chr15 8121632 8121669 -77574085 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 516 225 196 35 chr15 8121669 8121691 -77574063 - AluJo SINE Alu -198 114 97 440 141 0 0 chr15 8121705 8121769 -77573985 - AluSp/q SINE Alu -36 267 204 3456 177 4 2 chr15 8121769 8122324 -77573430 + L1PA12 LINE L1 1030 1585 -5996 3391 148 44 19 chr15 8122322 8122952 -77572802 + L1PA12 LINE L1 2388 3033 -4541 * 5265 126 37 16 chr15 8123066 8123901 -77571853 - L1PB2 LINE L1 -5251 895 9 2068 124 0 0 chr15 8123914 8124188 -77571566 - AluSx SINE Alu -15 297 24 1034 175 11 26 chr15 8124188 8124377 -77571377 - MLT1C LTR MaLR -281 186 1 24 0 0 0 chr15 8127213 8127237 -77568517 + AT_rich Low_complexity Low_complexity 1 24 0 188 122 24 0 chr15 8127752 8127793 -77567961 + T-rich Low_complexity Low_complexity 6 47 0 207 281 135 11 chr15 8128141 8128230 -77567524 - MIR3 SINE MIR 0 208 109 385 249 12 89 chr15 8128405 8128574 -77567180 - LTR2 LTR ERV1 -293 156 1 316 138 17 0 chr15 8128908 8128966 -77566788 - MLT1E LTR MaLR -2 565 507 1523 205 51 32 chr15 8128966 8129336 -77566418 - MSTD LTR MaLR -19 377 1 1764 278 71 14 chr15 8129336 8129606 -77566148 - MLT1E LTR MaLR -56 537 284 2148 148 3 0 chr15 8129606 8129917 -77565837 - AluSp SINE Alu -1 312 1 1764 278 71 14 chr15 8129917 8130154 -77565600 - MLT1E LTR MaLR -309 284 1 1082 237 53 0 chr15 8130192 8130437 -77565317 - MIR SINE MIR -3 259 2 1918 159 37 67 chr15 8131556 8131958 -77563796 + MLT1B LTR MaLR 1 390 0 1443 180 38 52 chr15 8132288 8132632 -77563122 - MER44D DNA MER2_type 0 609 1 2303 89 10 0 chr15 8133474 8133766 -77561988 + AluSx SINE Alu 1 295 -17 242 186 0 0 chr15 8134091 8134134 -77561620 - tRNA-Phe-TTC tRNA tRNA -33 43 1 25 31 0 0 chr15 8134523 8134555 -77561199 + AT_rich Low_complexity Low_complexity 1 32 0 2280 87 13 0 chr15 8134562 8134860 -77560894 - AluY SINE Alu -7 304 3 21 36 0 0 chr15 8135664 8135692 -77560062 + AT_rich Low_complexity Low_complexity 1 28 0 2265 101 3 0 chr15 8137183 8137480 -77558274 - AluSx SINE Alu -14 298 1 621 291 39 35 chr15 8137589 8137843 -77557911 - LTR40b LTR ERVL -5 457 203 373 190 267 0 chr15 8138023 8138139 -77557615 - LTR40a LTR ERVL -372 147 1 1817 166 11 0 chr15 8138334 8138617 -77557137 - AluJo SINE Alu -26 286 1 5669 150 12 7 chr15 8139392 8139525 -77556229 + L1MA4 LINE L1 5237 5368 -932 2025 134 0 0 chr15 8139525 8139835 -77555919 + AluSx SINE Alu 1 310 0 5669 150 12 7 chr15 8139835 8140750 -77555004 + L1MA4 LINE L1 5368 6291 -9 1555 81 0 5 chr15 8141040 8141262 -77554492 - L1P LINE L1 -1216 4930 4710 * 3082 71 23 2 chr15 8141251 8141686 -77554068 - L1P LINE L1 -1697 4449 4006 1207 97 0 0 chr15 8142135 8142300 -77553454 + L1PA13 LINE L1 5980 6144 -19 53 17 0 0 chr15 8142301 8142361 -77553393 + AT_rich Low_complexity Low_complexity 1 60 0 2385 94 3 0 chr15 8142687 8142995 -77552759 + AluSc SINE Alu 1 309 0 21 36 0 0 chr15 8143100 8143128 -77552626 + AT_rich Low_complexity Low_complexity 1 28 0 2175 130 0 3 chr15 8143693 8143992 -77551762 + AluJb SINE Alu 3 300 -12 2010 151 0 10 chr15 8145176 8145480 -77550274 - AluSx SINE Alu -3 309 9 959 189 0 0 chr15 8145491 8145650 -77550104 - FRAM SINE Alu -17 159 1 25 51 0 0 chr15 8145943 8145982 -77549772 + AT_rich Low_complexity Low_complexity 1 39 0 394 18 36 0 chr15 8146083 8146138 -77549616 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 428 253 102 49 chr15 8146176 8146370 -77549384 - MIR SINE MIR -46 216 15 2062 167 0 24 chr15 8147190 8147562 -77548192 - MLT1A1 LTR MaLR -2 363 1 226 230 6 0 chr15 8147562 8147609 -77548145 + MER5B DNA MER1_type 64 123 -66 610 218 127 30 chr15 8147842 8148007 -77547747 - MER5A DNA MER1_type 0 189 9 263 307 10 0 chr15 8150546 8150647 -77545107 + MER94 DNA DNA 1 102 -32 2263 122 6 3 chr15 8150782 8151094 -77544660 + AluSq SINE Alu 1 313 0 243 286 14 0 chr15 8152067 8152137 -77543617 + GA-rich Low_complexity Low_complexity 2 72 0 26 0 0 0 chr15 8152763 8152789 -77542965 + AT_rich Low_complexity Low_complexity 1 26 0 318 251 57 109 chr15 8153111 8153322 -77542432 - LTR41 LTR ERVL -564 209 10 207 326 174 0 chr15 8153366 8153464 -77542290 + L2 LINE L2 2233 2347 -967 26 0 0 0 chr15 8153547 8153573 -77542181 + AT_rich Low_complexity Low_complexity 1 26 0 664 263 103 22 chr15 8153866 8154098 -77541656 - MIR SINE MIR -7 255 5 3524 188 42 39 chr15 8154122 8154642 -77541112 + L1MB4 LINE L1 4415 4932 -1248 2587 185 9 0 chr15 8154642 8155101 -77540653 + MLT1C LTR MaLR 5 467 0 3524 188 42 39 chr15 8155101 8155893 -77539861 + L1MB4 LINE L1 4932 5720 -460 2106 120 3 3 chr15 8155893 8156192 -77539562 + AluSc SINE Alu 1 299 -10 3524 188 42 39 chr15 8156192 8156296 -77539458 + L1MB4 LINE L1 5720 5822 -358 2189 105 0 13 chr15 8156296 8156601 -77539153 + AluSc SINE Alu 1 301 -8 3524 188 42 39 chr15 8156601 8156938 -77538816 + L1MB4 LINE L1 5822 6174 -6 421 252 101 0 chr15 8157318 8157437 -77538317 - MIR SINE MIR 0 262 132 415 341 7 7 chr15 8157697 8157832 -77537922 + L2 LINE L2 3137 3271 -1 22 0 0 0 chr15 8158455 8158477 -77537277 + AT_rich Low_complexity Low_complexity 1 22 0 2271 99 3 0 chr15 8160456 8160748 -77535006 + AluSx SINE Alu 1 293 -19 3521 135 4 0 chr15 8161403 8161930 -77533824 - LTR26B LTR ERV1 -2 529 1 997 65 43 0 chr15 8162802 8162940 -77532814 - L1MA2 LINE L1 -5 6299 6156 1197 93 0 0 chr15 8163763 8163914 -77531840 + AluSq/x SINE Alu 1 151 -161 2688 97 11 3 chr15 8165781 8166153 -77529601 + THE1C LTR MaLR 1 375 0 2485 79 93 109 chr15 8166153 8166649 -77529105 + THE1C-int LTR MaLR 1 488 -1092 6753 179 86 20 chr15 8166750 8168189 -77527565 + MER52A LTR ERV1 223 1755 0 180 111 0 0 chr15 8168413 8168440 -77527314 + (GA)n Simple_repeat Simple_repeat 1 27 0 226 315 0 0 chr15 8168932 8169005 -77526749 + GA-rich Low_complexity Low_complexity 2 74 0 992 224 42 125 chr15 8169600 8170246 -77525508 - L1MC4 LINE L1 -744 7217 6626 646 308 119 18 chr15 8170396 8170890 -77524864 - L1M4 LINE L1 -3444 2702 2159 820 199 6 0 chr15 8171431 8171607 -77524147 - L1MB3 LINE L1 -197 5986 5810 579 266 10 3 chr15 8171726 8171869 -77523885 + MER45A DNA AcHobo 28 169 -9 609 242 25 80 chr15 8171920 8172026 -77523728 - L1MB3 LINE L1 -1393 4753 4643 2404 59 16 7 chr15 8172026 8172333 -77523421 - AluY SINE Alu -1 310 1 609 242 25 80 chr15 8172333 8172540 -77523214 - L1MB3 LINE L1 -1503 4643 4457 2670 192 58 12 chr15 8172594 8172844 -77522910 - L1MB2 LINE L1 -123 6048 5811 2280 141 88 8 chr15 8172844 8173240 -77522514 + MSTA LTR MaLR 1 428 0 2670 192 58 12 chr15 8173240 8173630 -77522124 - L1MB2 LINE L1 -360 5811 5379 2715 191 12 20 chr15 8173631 8174179 -77521575 - MLT2B3 LTR ERVL -19 514 1 1544 228 24 2 chr15 8174179 8174596 -77521158 - L1MB2 LINE L1 -782 5364 4939 2612 72 8 3 chr15 8174602 8174965 -77520789 + THE1-int LTR MaLR 61 425 -1155 2339 98 0 0 chr15 8174966 8175263 -77520491 - AluSq SINE Alu -16 297 1 5249 204 39 43 chr15 8175344 8175953 -77519801 - L1MB2 LINE L1 -1265 4881 4271 270 0 0 0 chr15 8175953 8175983 -77519771 + (TG)n Simple_repeat Simple_repeat 1 30 0 5249 204 39 43 chr15 8175983 8176896 -77518858 - L1MB2 LINE L1 -1875 4271 3365 1166 241 31 3 chr15 8176896 8177219 -77518535 - L1MB2 LINE L1 -3208 2938 2607 2176 121 0 0 chr15 8177220 8177509 -77518245 - AluSq SINE Alu -22 291 3 236 300 28 67 chr15 8178060 8178240 -77517514 - HAL1b LINE L1 -825 523 351 263 184 0 36 chr15 8178244 8178311 -77517443 + L1MC/D LINE L1 5541 5598 -644 2222 108 0 3 chr15 8180456 8180762 -77514992 + AluSx SINE Alu 1 305 -7 319 234 86 78 chr15 8183680 8183936 -77511818 - Charlie7 DNA MER1_type -144 2468 2211 569 290 30 21 chr15 8185377 8185702 -77510052 + MLT1I LTR MaLR 40 400 -9 2242 88 0 3 chr15 8186003 8186311 -77509443 - AluSq SINE Alu 0 307 1 225 309 55 55 chr15 8186488 8186598 -77509156 + L2 LINE L2 3204 3313 0 446 324 56 42 chr15 8186609 8186825 -77508929 + L3 LINE CR1 909 1127 -450 310 370 65 16 chr15 8187263 8187447 -77508307 - MIR SINE MIR -50 212 20 * 429 297 179 29 chr15 8187443 8187716 -77508038 + L3 LINE CR1 1204 1517 -60 1808 160 7 4 chr15 8188612 8188893 -77506861 + AluJo SINE Alu 1 282 -30 360 256 0 0 chr15 8188835 8188913 -77506841 + AluJ/FRAM SINE Alu 225 302 0 216 67 0 0 chr15 8188895 8188925 -77506829 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 3424 148 50 62 chr15 8189068 8189830 -77505924 + HUERS-P1 LTR ERV1 4449 5201 -745 2284 135 120 5 chr15 8189830 8190214 -77505540 - MSTA LTR MaLR 0 428 1 7388 186 126 8 chr15 8190214 8191691 -77504063 - MSTA-int LTR MaLR 0 1651 1 2362 132 62 34 chr15 8191691 8192107 -77503647 - MSTA LTR MaLR 0 428 1 1448 190 45 23 chr15 8192107 8192171 -77503583 + HUERS-P1 LTR ERV1 5430 5491 -840 2627 103 13 19 chr15 8192171 8192548 -77503206 + THE1C LTR MaLR 1 375 0 1448 190 45 23 chr15 8192548 8192836 -77502918 + HUERS-P1 LTR ERV1 5491 5790 -541 1280 167 140 39 chr15 8192848 8193183 -77502571 + HUERS-P1 LTR ERV1 5906 6274 -57 764 272 22 0 chr15 8193268 8193452 -77502302 + HUERS-P1 LTR ERV1 5950 6137 -126 2779 205 24 56 chr15 8193537 8194234 -77501520 + LTR8 LTR ERV1 16 690 -1 2207 99 0 13 chr15 8197260 8197564 -77498190 - AluSq SINE Alu -13 300 1 311 295 0 36 chr15 8197659 8197771 -77497983 - L1MC5 LINE L1 -145 7816 7709 344 254 30 52 chr15 8198383 8198517 -77497237 - HAL1 LINE L1 -122 2385 2255 690 291 225 44 chr15 8198787 8198904 -77496850 - HAL1 LINE L1 -698 1809 1715 1884 115 26 36 chr15 8198904 8199151 -77496603 - L1PA15 LINE L1 0 6165 5920 2224 76 7 0 chr15 8199151 8199440 -77496314 + AluSx SINE Alu 1 291 -21 1884 115 26 36 chr15 8199440 8199497 -77496257 - L1PA15 LINE L1 -245 5920 5864 690 291 225 44 chr15 8199497 8200907 -77494847 - HAL1 LINE L1 -792 1715 5 1131 181 84 50 chr15 8201198 8201519 -77494235 - L1MC/D LINE L1 -2199 5586 5255 202 268 0 0 chr15 8204778 8204819 -77490935 + polypyrimidine Low_complexity Low_complexity 3 43 0 1325 281 144 29 chr15 8205695 8206382 -77489372 - L1MC4a LINE L1 -743 5403 5092 2145 88 3 0 chr15 8206382 8206665 -77489089 - AluSx SINE Alu -28 284 1 1325 281 144 29 chr15 8206665 8206812 -77488942 - L1MC4a LINE L1 -1054 5092 4963 216 292 90 11 chr15 8207578 8207667 -77488087 + MIR3 SINE MIR 59 154 -54 650 265 132 0 chr15 8209679 8209868 -77485886 + Charlie1 DNA MER1_type 1 214 -2547 230 278 14 14 chr15 8209885 8209957 -77485797 + Charlie1 DNA MER1_type 2633 2704 -57 704 220 81 47 chr15 8210720 8211093 -77484661 - MLT1C LTR MaLR 0 467 5 367 229 31 0 chr15 8211194 8211290 -77484464 + MER103 DNA DNA 59 157 -9 1586 116 13 0 chr15 8211452 8211677 -77484077 + AluSq SINE Alu 1 228 -85 357 24 0 0 chr15 8211700 8211742 -77484012 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 346 229 106 39 chr15 8211787 8211966 -77483788 - HAL1 LINE L1 -95 2412 2222 259 290 0 0 chr15 8212247 8212316 -77483438 + MIR SINE MIR 159 227 -35 338 254 12 83 chr15 8212672 8212841 -77482913 - HAL1 LINE L1 -949 1558 1402 2156 89 3 10 chr15 8213691 8213983 -77481771 - AluSg SINE Alu -18 292 3 340 273 6 43 chr15 8214318 8214479 -77481275 + L1ME4a LINE L1 5967 6121 0 1617 182 20 37 chr15 8216620 8216972 -77478782 + MLT1A1 LTR MaLR 3 348 -17 1001 178 0 0 chr15 8224014 8224177 -77471577 + FRAM SINE Alu 1 163 -3 1486 153 102 11 chr15 8225956 8226230 -77469524 + AluJo SINE Alu 2 300 -12 192 179 0 0 chr15 8226671 8226710 -77469044 + (TG)n Simple_repeat Simple_repeat 1 39 0 398 301 37 34 chr15 8227432 8227665 -77468089 + HAL1 LINE L1 823 1059 -1448 2224 116 0 0 chr15 8227665 8227968 -77467786 + AluSx SINE Alu 1 303 -9 398 301 37 34 chr15 8227968 8228086 -77467668 + HAL1 LINE L1 1059 1175 -1332 749 246 107 85 chr15 8228783 8228809 -77466945 + MLT1J LTR MaLR 1 25 -486 2201 225 86 34 chr15 8228809 8229346 -77466408 - MLT1F1 LTR MaLR -2 565 1 749 246 107 85 chr15 8229346 8229729 -77466025 + MLT1J LTR MaLR 25 419 -92 2379 73 10 10 chr15 8229813 8230126 -77465628 + AluSq SINE Alu 1 313 0 2107 99 0 0 chr15 8231422 8231724 -77464030 + AluSg SINE Alu 1 302 0 365 304 99 48 chr15 8231731 8232004 -77463750 - L1MC4 LINE L1 -31 8011 7725 396 0 0 0 chr15 8232546 8232590 -77463164 + (TG)n Simple_repeat Simple_repeat 1 44 0 286 23 47 0 chr15 8232590 8232633 -77463121 + (GA)n Simple_repeat Simple_repeat 2 46 0 831 257 57 21 chr15 8232816 8233096 -77462658 - L1MC4a LINE L1 -1952 5856 5567 410 347 43 14 chr15 8233104 8233330 -77462424 - MIR SINE MIR -12 250 20 297 262 158 0 chr15 8234387 8234501 -77461253 - MIR SINE MIR -63 145 20 254 281 45 34 chr15 8235318 8235407 -77460347 - LTR33 LTR ERVL -341 180 91 880 193 173 85 chr15 8236681 8236895 -77458859 - MLT1A2 LTR MaLR 0 374 117 2089 122 0 0 chr15 8236895 8237189 -77458565 + AluSx SINE Alu 1 294 -18 880 193 173 85 chr15 8237189 8237316 -77458438 - MLT1A2 LTR MaLR -257 117 3 2240 108 0 0 chr15 8237854 8238159 -77457595 + AluSx SINE Alu 1 305 -7 195 162 0 0 chr15 8239039 8239076 -77456678 + (CA)n Simple_repeat Simple_repeat 2 38 0 1901 168 44 18 chr15 8239551 8239890 -77455864 + MER7A DNA MER2_type 1 346 0 480 35 0 0 chr15 8241889 8241947 -77453807 + (CA)n Simple_repeat Simple_repeat 1 58 0 2622 80 0 0 chr15 8242641 8242954 -77452800 + AluSq SINE Alu 1 313 0 736 282 116 28 chr15 8243345 8243732 -77452022 + L1MC4 LINE L1 7340 7760 -282 579 288 10 25 chr15 8244058 8244256 -77451498 + MIR SINE MIR 39 233 -29 308 289 30 73 chr15 8245187 8245419 -77450335 + L1MC/D LINE L1 5605 5826 -1982 27 0 0 0 chr15 8249055 8249082 -77446672 + GC_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr15 8249269 8249296 -77446458 + GC_rich Low_complexity Low_complexity 1 27 0 37 76 0 0 chr15 8249486 8249565 -77446189 + GC_rich Low_complexity Low_complexity 1 79 0 36 106 0 0 chr15 8249975 8250116 -77445638 + GC_rich Low_complexity Low_complexity 1 141 0 30 0 0 0 chr15 8250414 8250444 -77445310 + GC_rich Low_complexity Low_complexity 1 30 0 202 725 7 0 chr15 8250451 8250589 -77445165 + (GGCTG)n Simple_repeat Simple_repeat 3 141 0 30 27 0 0 chr15 8250830 8250867 -77444887 + GC_rich Low_complexity Low_complexity 1 37 0 3494 271 144 19 chr15 8253285 8254932 -77440822 + HAL1 LINE L1 84 1937 -570 304 239 266 0 chr15 8254968 8255081 -77440673 - MLT1I LTR MaLR -71 338 196 232 94 0 0 chr15 8255613 8255645 -77440109 - MLT1A2 LTR MaLR -62 312 281 890 240 151 43 chr15 8256026 8256302 -77439452 - MLT1I LTR MaLR 0 409 86 1829 164 5 67 chr15 8256302 8256457 -77439297 + MLT1A1 LTR MaLR 1 164 -201 2197 109 20 10 chr15 8256457 8256759 -77438995 + AluSx SINE Alu 1 305 -7 1829 164 5 67 chr15 8256759 8256992 -77438762 + MLT1A1 LTR MaLR 164 365 0 890 240 151 43 chr15 8256992 8257065 -77438689 - MLT1I LTR MaLR -323 86 22 794 292 111 39 chr15 8257100 8257437 -77438317 + HAL1 LINE L1 1957 2345 -162 2124 196 88 35 chr15 8257437 8258029 -77437725 + MLT1E3 LTR MaLR 1 623 -1 794 292 111 39 chr15 8258029 8258205 -77437549 + HAL1 LINE L1 2345 2507 0 1937 112 98 0 chr15 8258290 8258567 -77437187 - AluSg SINE Alu -6 304 1 372 341 96 10 chr15 8258567 8258775 -77436979 + MLT1J2 LTR MaLR 73 298 -152 184 336 64 0 chr15 8259953 8260063 -77435691 - MIR SINE MIR -83 179 63 2152 111 0 36 chr15 8261544 8261850 -77433904 + AluSx SINE Alu 3 297 -15 1087 213 171 72 chr15 8261877 8262346 -77433408 + MLT1G LTR MaLR 76 590 0 2449 89 0 13 chr15 8262364 8262678 -77433076 - AluSg SINE Alu 0 310 1 645 132 88 29 chr15 8262817 8262953 -77432801 + MLT1E3 LTR MaLR 1 144 -480 2522 76 0 0 chr15 8264085 8264386 -77431368 - AluY SINE Alu -10 301 1 248 318 86 18 chr15 8264407 8264579 -77431175 - L1M4 LINE L1 -3733 2413 2213 2099 126 13 0 chr15 8264579 8264880 -77430874 + AluSx SINE Alu 1 305 -7 248 318 86 18 chr15 8264880 8264987 -77430767 - L1M4 LINE L1 -3933 2213 2115 1077 246 68 14 chr15 8265327 8265620 -77430134 + MSTC LTR MaLR 1 309 -119 189 0 0 0 chr15 8266498 8266519 -77429235 + (A)n Simple_repeat Simple_repeat 1 21 0 2345 99 0 29 chr15 8270331 8270645 -77425109 + AluSg SINE Alu 1 305 -5 413 239 72 22 chr15 8270805 8270985 -77424769 + MER115 DNA AcHobo 58 246 -447 246 32 0 0 chr15 8271052 8271083 -77424671 + (GGCTG)n Simple_repeat Simple_repeat 2 32 0 347 259 168 5 chr15 8271091 8271276 -77424478 + MER115 DNA AcHobo 401 615 -78 3233 216 31 28 chr15 8271305 8272084 -77423670 + MER21B LTR ERV1 5 785 -78 232 288 38 12 chr15 8272645 8272725 -77423029 + MLT1L LTR MaLR 222 303 -312 1111 241 66 6 chr15 8273335 8273654 -77422100 + MER46C DNA MER2_type 1 338 0 835 182 6 77 chr15 8274710 8274891 -77420863 - FRAM SINE Alu -5 171 4 724 259 61 18 chr15 8274982 8275260 -77420494 + L1MEc LINE L1 35 324 -6072 2133 139 0 16 chr15 8275277 8275594 -77420160 + AluSx SINE Alu 1 312 0 1600 112 21 150 chr15 8275806 8276180 -77419574 + MER7A DNA MER2_type 1 324 -22 776 272 31 24 chr15 8276245 8276660 -77419094 + L1MEc LINE L1 660 1077 -5319 267 323 24 32 chr15 8276665 8276789 -77418965 + L1MDb LINE L1 7 129 -6280 311 264 11 11 chr15 8276899 8276986 -77418768 + L1MDb LINE L1 116 202 -6204 5663 251 50 17 chr15 8277504 8278175 -77417579 + L1MDb LINE L1 780 1427 -6015 2123 153 0 0 chr15 8278175 8278483 -77417271 + AluSx SINE Alu 1 308 -4 5663 251 50 17 chr15 8278483 8278528 -77417226 + L1MDb LINE L1 1427 1469 -5973 934 110 6 28 chr15 8278528 8278710 -77417044 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 5663 251 50 17 chr15 8278710 8279402 -77416352 + L1MDb LINE L1 1469 2137 -5305 2175 132 0 0 chr15 8279402 8279697 -77416057 + AluSx SINE Alu 1 295 -17 5663 251 50 17 chr15 8279697 8279755 -77415999 + L1MDb LINE L1 2137 2192 -5250 333 0 0 0 chr15 8279755 8279792 -77415962 + (TA)n Simple_repeat Simple_repeat 1 37 0 5663 251 50 17 chr15 8279792 8281190 -77414564 + L1MDb LINE L1 2192 3542 -3900 2273 103 3 0 chr15 8281190 8281481 -77414273 - AluSg SINE Alu -18 292 1 5663 251 50 17 chr15 8281481 8282494 -77413260 + L1MDb LINE L1 3542 5704 -1738 1465 218 20 59 chr15 8282774 8282991 -77412763 + L1M4 LINE L1 4390 4614 -1532 1722 85 48 0 chr15 8282991 8283262 -77412492 + L1MA3 LINE L1 6020 6303 -2 1465 218 20 59 chr15 8283262 8283534 -77412220 + L1M4 LINE L1 4614 4860 -1286 4212 182 47 32 chr15 8283552 8284537 -77411217 - L1MB7 LINE L1 -23 6161 5154 2225 103 7 0 chr15 8284537 8284856 -77410898 + AluSp SINE Alu 1 313 0 4212 182 47 32 chr15 8284856 8285407 -77410347 - L1MB7 LINE L1 -1030 5154 4613 468 308 57 38 chr15 8285452 8285871 -77409883 + L1MEc LINE L1 1060 1486 -4910 5309 145 38 24 chr15 8285872 8286846 -77408908 + L1MC1 LINE L1 5346 6333 0 312 242 156 16 chr15 8286847 8286975 -77408779 + L1MEc LINE L1 1432 1577 -4638 753 251 76 51 chr15 8286980 8287374 -77408380 + L1MEc LINE L1 1845 2248 -4148 505 300 58 10 chr15 8287344 8287657 -77408097 + L1MEc LINE L1 2179 2506 -3709 * 1328 212 44 80 chr15 8287662 8287828 -77407926 + MLT1B LTR MaLR 1 171 -219 2186 139 0 0 chr15 8287828 8288129 -77407625 + AluSx SINE Alu 1 301 -11 1328 212 44 80 chr15 8288129 8288348 -77407406 + MLT1B LTR MaLR 171 372 -18 1853 227 118 2 chr15 8288364 8288888 -77406866 + L1MEc LINE L1 2513 3097 -3118 288 111 0 0 chr15 8289058 8289103 -77406651 + (TG)n Simple_repeat Simple_repeat 2 46 0 329 212 71 0 chr15 8290531 8290616 -77405138 - MER45C DNA AcHobo -145 808 718 487 198 10 0 chr15 8290720 8290816 -77404938 - MER45C DNA AcHobo -776 177 81 456 323 69 44 chr15 8291573 8291942 -77403812 + HERV16 LTR ERVL 492 866 -4130 1705 175 66 0 chr15 8291942 8292262 -77403492 - L1MB3 LINE L1 -7 6176 5836 456 323 69 44 chr15 8292262 8292439 -77403315 + HERV16 LTR ERVL 866 1037 -3959 251 286 36 12 chr15 8292494 8292578 -77403176 + HERV16 LTR ERVL 1007 1092 -3904 2062 326 125 10 chr15 8292740 8293856 -77401898 + HERV16 LTR ERVL 1375 2658 -2430 2286 67 13 25 chr15 8295486 8295801 -77399953 - AluY SINE Alu 0 311 1 350 382 24 14 chr15 8296288 8296495 -77399259 + MIR SINE MIR 6 214 -48 541 196 250 7 chr15 8296589 8296737 -77399017 - LTR2 LTR ERV1 0 449 266 296 312 6 81 chr15 8296733 8296906 -77398848 - LTR2 LTR ERV1 -289 160 1 * 185 253 96 72 chr15 8297730 8297813 -77397941 - MIR SINE MIR -72 190 106 329 266 82 53 chr15 8298830 8299015 -77396739 + LTR33 LTR ERVL 1 166 -355 408 257 18 9 chr15 8299214 8299327 -77396427 + LTR33A LTR ERVL 407 520 -3 390 268 63 39 chr15 8300000 8300185 -77395569 - MLT1G LTR MaLR -138 417 218 447 186 23 0 chr15 8300490 8300568 -77395186 + MER67A LTR ERV1 1 80 -463 1086 235 70 60 chr15 8300568 8301027 -77394727 + MER67B LTR ERV1 1 341 -331 1728 143 17 7 chr15 8301027 8301321 -77394433 + AluY SINE Alu 1 297 -14 1086 235 70 60 chr15 8301321 8301385 -77394369 + MER67B LTR ERV1 341 403 -269 447 255 72 18 chr15 8301395 8301599 -77394155 + MER67A LTR ERV1 289 541 -2 672 205 0 0 chr15 8302172 8302338 -77393416 + (TG)n Simple_repeat Simple_repeat 2 167 0 199 339 0 0 chr15 8305770 8305829 -77389925 - L2 LINE L2 -9 3263 3205 330 67 0 0 chr15 8307286 8307331 -77388423 + (TG)n Simple_repeat Simple_repeat 2 46 0 195 295 85 31 chr15 8307936 8308065 -77387689 - MIR SINE MIR -56 152 17 367 282 150 29 chr15 8308365 8308638 -77387116 + ERVL LTR ERVL 5038 5343 -421 1531 193 7 10 chr15 8308660 8308956 -77386798 + AluSx SINE Alu 1 295 -17 1786 244 89 21 chr15 8308956 8309360 -77386394 - L1ME3A LINE L1 -40 6130 5755 2060 105 3 59 chr15 8309360 8309683 -77386071 - AluSg SINE Alu -5 305 1 1786 244 89 21 chr15 8309683 8309718 -77386036 - L1ME3A LINE L1 -415 5755 5724 297 0 0 0 chr15 8309718 8309751 -77386003 + (CA)n Simple_repeat Simple_repeat 2 34 0 1786 244 89 21 chr15 8309751 8309961 -77385793 - L1ME3A LINE L1 -446 5724 5436 204 40 0 0 chr15 8309965 8309990 -77385764 + (TCCCC)n Simple_repeat Simple_repeat 4 28 0 316 323 120 32 chr15 8310046 8310387 -77385367 - L1M4c LINE L1 -1205 1538 937 3812 201 11 62 chr15 8310438 8310638 -77385116 - L1MB8 LINE L1 -45 6133 5925 1594 164 20 30 chr15 8310638 8310942 -77384812 - AluJb SINE Alu -11 301 1 3812 201 11 62 chr15 8310942 8311803 -77383951 - L1MB8 LINE L1 -253 5925 5122 2348 88 3 0 chr15 8311955 8312263 -77383491 - AluY SINE Alu -2 309 1 238 321 101 0 chr15 8312472 8312581 -77383173 - LTR33A LTR ERVL -16 507 388 2132 192 11 8 chr15 8312629 8312993 -77382761 - MLT1A1 LTR MaLR 0 365 1 244 231 39 108 chr15 8313208 8313338 -77382416 - LTR33A LTR ERVL -365 158 38 1740 133 0 4 chr15 8313693 8313956 -77381798 + AluSx SINE Alu 12 273 -39 279 284 88 14 chr15 8314242 8314390 -77381364 + MER103 DNA DNA 1 159 -7 1528 212 164 15 chr15 8315209 8315606 -77380148 - MLT1F1 LTR MaLR -2 565 110 31 26 0 0 chr15 8315926 8315964 -77379790 + AT_rich Low_complexity Low_complexity 1 38 0 668 148 40 0 chr15 8316201 8316302 -77379452 + FLAM_C SINE Alu 7 111 -32 2040 141 10 0 chr15 8316327 8316633 -77379121 + AluSq SINE Alu 3 311 -2 280 315 36 18 chr15 8316976 8317087 -77378667 - L2 LINE L2 0 3313 3201 630 152 128 0 chr15 8317156 8317281 -77378473 - MLT1F1 LTR MaLR -426 141 1 244 163 105 13 chr15 8317513 8317606 -77378148 + MIR SINE MIR 102 207 -55 1674 62 0 5 chr15 8319009 8319218 -77376536 - L1PA5 LINE L1 0 6154 5947 324 339 17 40 chr15 8319677 8319854 -77375900 + MIR SINE MIR 21 193 -69 1831 94 4 0 chr15 8319953 8320208 -77375546 + AluSx SINE Alu 57 312 0 928 112 0 0 chr15 8321705 8321830 -77373924 - AluSq/x SINE Alu -188 125 1 189 306 16 0 chr15 8321959 8322021 -77373733 + MIR3 SINE MIR 122 184 -24 2180 160 28 21 chr15 8322805 8323192 -77372562 + MLT1B LTR MaLR 1 390 0 381 328 73 35 chr15 8324473 8324705 -77371049 - HERV16 LTR ERVL -4211 785 545 801 338 21 68 chr15 8325005 8325490 -77370264 + HERV16 LTR ERVL 1110 1571 -3425 1024 173 26 30 chr15 8325527 8325819 -77369935 + L1MB7 LINE L1 5726 6148 -36 1646 254 98 27 chr15 8325844 8326367 -77369387 + HERV16 LTR ERVL 1712 2271 -2725 775 144 30 30 chr15 8326369 8326484 -77369270 + AluJo/FLAM SINE Alu 1 118 -184 1943 152 0 13 chr15 8326484 8326619 -77369135 + AluJb SINE Alu 1 136 -176 2211 116 3 0 chr15 8326619 8326929 -77368825 + AluSp SINE Alu 2 312 -1 1943 152 0 13 chr15 8326929 8327108 -77368646 + AluJb SINE Alu 136 311 -1 775 144 30 30 chr15 8327108 8327124 -77368630 + AluJo/FLAM SINE Alu 117 132 -170 21 57 0 0 chr15 8327142 8327177 -77368577 + AT_rich Low_complexity Low_complexity 1 35 0 1811 318 26 46 chr15 8327194 8328083 -77367671 + HERV16 LTR ERVL 2309 3091 -1905 367 331 20 67 chr15 8328105 8328359 -77367395 + HERV16 LTR ERVL 3595 3836 -1928 216 0 0 0 chr15 8328557 8328581 -77367173 + (A)n Simple_repeat Simple_repeat 1 24 0 404 318 47 25 chr15 8328586 8328804 -77366950 - L1MEc LINE L1 -3927 2482 2237 2714 142 49 0 chr15 8329025 8329433 -77366321 + MSTC LTR MaLR 1 428 0 378 347 140 0 chr15 8329456 8329649 -77366105 - L1MEc LINE L1 -4579 1984 1765 5409 110 10 22 chr15 8329973 8330533 -77365221 + L1MA5A LINE L1 5489 6037 -260 2058 121 3 10 chr15 8330533 8330838 -77364916 + AluSx SINE Alu 1 303 -9 5409 110 10 22 chr15 8330838 8331096 -77364658 + L1MA5A LINE L1 6037 6297 0 21 57 0 0 chr15 8331096 8331131 -77364623 + AT_rich Low_complexity Low_complexity 1 35 0 361 263 11 21 chr15 8331728 8331823 -77363931 + MER91A DNA MER1_type 1 94 -102 303 261 34 11 chr15 8332960 8333048 -77362706 + L2 LINE L2 3134 3223 -49 199 289 24 48 chr15 8333170 8333253 -77362501 + MIR SINE MIR 89 169 -93 1771 171 0 7 chr15 8333356 8333654 -77362100 + AluJb SINE Alu 1 296 -16 1396 227 98 102 chr15 8333860 8334398 -77361356 + MLT1F LTR MaLR 7 542 0 733 273 131 41 chr15 8335171 8335753 -77360001 - HAL1 LINE L1 0 2507 1874 2200 316 86 31 chr15 8335764 8336518 -77359236 - HAL1 LINE L1 -694 1813 955 2077 92 4 0 chr15 8336518 8336791 -77358963 - AluSx SINE Alu -38 274 1 2200 316 86 31 chr15 8336791 8337340 -77358414 - HAL1 LINE L1 -1552 955 438 329 276 0 0 chr15 8337585 8337661 -77358093 + MIR SINE MIR 119 194 -68 2340 86 0 0 chr15 8338564 8338868 -77356886 + AluSc SINE Alu 1 304 -5 1878 112 0 14 chr15 8338875 8339153 -77356601 + AluSx SINE Alu 39 312 0 2056 115 13 16 chr15 8339886 8340198 -77355556 + AluSx SINE Alu 1 311 -1 738 191 26 32 chr15 8340288 8340598 -77355156 - MLT1A1 LTR MaLR -1 364 1 311 307 98 53 chr15 8340670 8340779 -77354975 - L1MC4a LINE L1 -1876 5932 5829 2091 115 6 53 chr15 8340779 8341100 -77354654 - AluSq SINE Alu -7 306 1 311 307 98 53 chr15 8341100 8341234 -77354520 - L1MC4a LINE L1 -1979 5829 5678 362 265 66 10 chr15 8341347 8341543 -77354211 - L1MC4a LINE L1 -2322 5486 5280 414 0 0 0 chr15 8341834 8341880 -77353874 + (TG)n Simple_repeat Simple_repeat 2 47 0 1894 167 7 0 chr15 8341880 8342162 -77353592 - AluSx SINE Alu -28 284 1 1185 129 4 117 chr15 8342396 8342660 -77353094 + LTR12 LTR ERV1 1 234 -480 275 149 0 0 chr15 8342717 8342764 -77352990 + LTR12 LTR ERV1 228 274 -440 233 274 0 0 chr15 8342794 8342867 -77352887 + LTR30 LTR ERV1 552 624 -98 558 217 58 0 chr15 8342867 8342987 -77352767 + LTR12 LTR ERV1 359 485 -229 1955 117 11 3 chr15 8343398 8343681 -77352073 + AluSg SINE Alu 15 299 -11 3960 83 18 2 chr15 8343776 8344321 -77351433 - MER41A LTR ERV1 0 554 1 355 206 29 0 chr15 8345788 8345856 -77349898 - MER8 DNA MER2_type 0 239 170 * 2210 143 88 7 chr15 8345839 8346257 -77349497 + Tigger2 DNA MER2_type 2267 2718 0 568 205 93 12 chr15 8346888 8347049 -77348705 - Charlie1b DNA MER1_type -24 499 326 938 82 16 0 chr15 8347058 8347180 -77348574 + AluSp SINE Alu 2 125 -188 277 114 0 0 chr15 8347363 8347407 -77348347 - MADE1 DNA Mariner -36 44 1 214 239 0 0 chr15 8347433 8347479 -77348275 - L2 LINE L2 -13 3300 3255 1240 279 42 18 chr15 8347746 8348180 -77347574 - L1ME1 LINE L1 -5 6161 5718 640 211 35 99 chr15 8348729 8348961 -77346793 - Charlie1b DNA MER1_type -305 218 2 403 291 117 45 chr15 8348971 8349150 -77346604 + HAL1 LINE L1 818 1009 -1498 * 467 289 179 7 chr15 8349120 8349393 -77346361 + L1MC/D LINE L1 4240 4559 -1587 2063 155 0 15 chr15 8349495 8349837 -77345917 - MER1B DNA MER1_type 0 337 1 354 312 65 13 chr15 8349844 8349998 -77345756 + L1MC/D LINE L1 5173 5334 -812 225 0 171 0 chr15 8350127 8350162 -77345592 - MLT2D LTR ERVL 0 515 475 293 264 24 24 chr15 8350165 8350290 -77345464 + (CATATA)n Simple_repeat Simple_repeat 2 126 0 1642 196 32 51 chr15 8350325 8350605 -77345149 - MLT2D LTR ERVL -45 369 85 2082 105 22 0 chr15 8350605 8350872 -77344882 + AluSx SINE Alu 3 275 -37 204 40 0 0 chr15 8350875 8350900 -77344854 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1642 196 32 51 chr15 8350900 8350988 -77344766 - MLT2D LTR ERVL -331 83 4 279 272 99 27 chr15 8351126 8351292 -77344462 - MLT1J1 LTR MaLR -279 167 31 678 167 9 0 chr15 8351303 8351411 -77344343 - FLAM_C SINE Alu -20 123 15 272 178 56 56 chr15 8351430 8351520 -77344234 + L1MC/D LINE L1 5393 5482 -2326 235 250 16 0 chr15 8351799 8351863 -77343891 + MER115 DNA AcHobo 180 244 -449 2312 103 7 0 chr15 8352040 8352342 -77343412 + AluSg SINE Alu 1 304 -6 720 276 75 13 chr15 8352459 8352698 -77343056 + MIR SINE MIR 9 262 0 329 328 0 17 chr15 8353432 8353548 -77342206 + C-rich Low_complexity Low_complexity 5 118 0 424 117 0 72 chr15 8353551 8353662 -77342092 + (CCCCCT)n Simple_repeat Simple_repeat 6 108 0 22 0 0 0 chr15 8354047 8354069 -77341685 + GC_rich Low_complexity Low_complexity 1 22 0 2483 80 0 0 chr15 8355625 8355927 -77339827 - AluY SINE Alu -9 302 1 2301 92 7 0 chr15 8356074 8356369 -77339385 - AluSp SINE Alu -16 297 1 255 339 31 63 chr15 8357286 8357413 -77338341 + MIR3 SINE MIR 15 137 -71 1788 191 0 6 chr15 8357467 8357943 -77337811 - AluJb SINE Alu 0 474 1 464 230 34 39 chr15 8357993 8358171 -77337583 - L1MC5 LINE L1 -70 7891 7715 929 255 97 47 chr15 8358188 8358569 -77337185 - MLT1H LTR MaLR -43 506 107 1468 197 60 161 chr15 8358674 8358906 -77336848 - L1MC5 LINE L1 -262 7699 7445 2018 159 0 3 chr15 8358906 8359208 -77336546 - AluSx SINE Alu -9 303 3 1468 197 60 161 chr15 8359208 8359523 -77336231 - L1MC5 LINE L1 -516 7445 7100 2454 97 3 0 chr15 8359523 8359832 -77335922 - AluSx SINE Alu -2 310 1 1468 197 60 161 chr15 8359832 8360457 -77335297 - L1MC5 LINE L1 -861 7100 6645 237 244 77 51 chr15 8360733 8360889 -77334865 - L1MC4a LINE L1 -1614 6194 6035 2419 78 10 0 chr15 8361128 8361421 -77334333 - AluSx SINE Alu -14 298 3 1305 174 154 48 chr15 8361444 8361496 -77334258 - MSTD LTR MaLR -2 394 349 2111 133 3 7 chr15 8361496 8361796 -77333958 - AluSx SINE Alu -13 299 1 1305 174 154 48 chr15 8361796 8362099 -77333655 - MSTD LTR MaLR -47 349 1 1079 227 61 14 chr15 8363582 8363926 -77331828 - MER69 DNA AcHobo -1 2525 2166 866 217 28 0 chr15 8363926 8364106 -77331648 - MER58A DNA MER1_type 0 224 40 786 194 47 56 chr15 8364152 8364237 -77331517 - MER69 DNA AcHobo -381 2145 2061 2456 81 0 0 chr15 8364237 8364534 -77331220 - AluY SINE Alu -14 297 1 786 194 47 56 chr15 8364534 8364680 -77331074 - MER69 DNA AcHobo -465 2061 1916 * 800 266 56 0 chr15 8364676 8364890 -77330864 - MER69 DNA AcHobo -1591 935 710 2156 178 116 65 chr15 8365506 8366033 -77329721 + MLT2B3 LTR ERVL 1 554 0 468 286 86 45 chr15 8367576 8367803 -77327951 + MIR SINE MIR 17 261 -1 357 24 0 0 chr15 8369139 8369181 -77326573 + (CA)n Simple_repeat Simple_repeat 2 43 0 1995 125 12 64 chr15 8370054 8370383 -77325371 + AluSx SINE Alu 1 312 0 304 330 124 29 chr15 8370408 8370519 -77325235 + HAL1 LINE L1 880 979 -1528 1282 164 122 73 chr15 8370519 8370946 -77324808 - LTR7 LTR ERV1 -2 448 1 304 330 124 29 chr15 8370946 8371218 -77324536 + HAL1 LINE L1 979 1302 -1205 217 204 37 0 chr15 8371634 8371688 -77324066 + GA-rich Low_complexity Low_complexity 4 59 0 266 328 59 8 chr15 8371794 8371913 -77323841 - MIR SINE MIR -131 131 7 2556 77 0 0 chr15 8372455 8372766 -77322988 + AluY SINE Alu 1 311 0 554 380 123 0 chr15 8372768 8373100 -77322654 + L1MC4a LINE L1 4143 4515 -1631 2476 71 7 7 chr15 8373119 8373428 -77322326 - AluSc SINE Alu 0 309 1 312 285 166 40 chr15 8373450 8373601 -77322153 + L1MC4a LINE L1 5550 5719 -402 430 239 29 116 chr15 8373644 8373921 -77321833 + L1MC4a LINE L1 5707 5963 -158 2130 96 36 0 chr15 8373938 8374219 -77321535 - AluSx SINE Alu -17 295 5 29 70 0 0 chr15 8374369 8374426 -77321328 + AT_rich Low_complexity Low_complexity 1 57 0 645 178 8 0 chr15 8374426 8374544 -77321210 - FLAM_C SINE Alu -14 119 1 852 268 105 32 chr15 8374622 8375148 -77320606 - HAL1 LINE L1 -85 2422 1859 2467 71 10 0 chr15 8375491 8375938 -77319816 + AluY SINE Alu 1 450 0 287 360 0 0 chr15 8376259 8376412 -77319342 + CT-rich Low_complexity Low_complexity 2 154 0 2919 13 0 0 chr15 8376796 8377105 -77318649 + AluYb8 SINE Alu 1 309 -9 1366 237 59 3 chr15 8377629 8377950 -77317804 - MER70A LTR ERVL -130 342 4 1018 217 5 0 chr15 8378848 8379051 -77316703 - MLT1B LTR MaLR -11 379 176 1108 146 29 0 chr15 8379051 8379222 -77316532 - FRAM SINE Alu -3 173 1 779 213 30 0 chr15 8379226 8379395 -77316359 - MLT1B LTR MaLR -213 177 4 1308 204 19 94 chr15 8380750 8381166 -77314588 - MLT1B LTR MaLR -5 385 1 260 212 24 0 chr15 8381333 8381418 -77314336 + (CATAT)n Simple_repeat Simple_repeat 4 90 0 606 195 29 6 chr15 8381433 8381607 -77314147 + (CATAT)n Simple_repeat Simple_repeat 1 178 0 558 227 80 25 chr15 8382162 8382325 -77313429 - MER69A DNA AcHobo -5 172 1 365 216 21 0 chr15 8383375 8383472 -77312282 + (CATAT)n Simple_repeat Simple_repeat 5 103 0 2289 111 0 0 chr15 8383672 8383969 -77311785 - AluSx SINE Alu -15 297 1 25 0 0 0 chr15 8384199 8384224 -77311530 + AT_rich Low_complexity Low_complexity 1 25 0 2125 116 17 0 chr15 8384885 8385177 -77310577 - AluSg SINE Alu -13 297 1 216 279 18 6 chr15 8385493 8385604 -77310150 - MER5A DNA MER1_type 0 189 12 388 272 73 15 chr15 8386517 8386653 -77309101 + MER69 DNA AcHobo 6 149 -2377 343 194 15 0 chr15 8386670 8386737 -77309017 - MLT1G1 LTR MaLR 0 595 528 4906 229 47 36 chr15 8386743 8387786 -77307968 + L1MDb LINE L1 8 1069 -5340 2150 147 0 10 chr15 8387786 8388099 -77307655 - AluSx SINE Alu -2 310 1 4906 229 47 36 chr15 8388099 8388368 -77307386 + L1MDb LINE L1 1069 1334 -5075 2335 126 0 0 chr15 8388378 8388688 -77307066 + AluSg SINE Alu 1 310 0 656 291 12 8 chr15 8388688 8388929 -77306825 + L1MDb LINE L1 2776 3017 -3389 1354 165 40 144 chr15 8389170 8389474 -77306280 - Zaphod DNA AcHobo -238 3793 3459 213 39 0 0 chr15 8389474 8389500 -77306254 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 1354 165 40 144 chr15 8389500 8389523 -77306231 - Zaphod DNA AcHobo -572 3459 3435 1821 118 19 23 chr15 8389523 8389785 -77305969 - AluSx SINE Alu -51 261 1 1354 165 40 144 chr15 8389785 8390025 -77305729 - Zaphod DNA AcHobo -596 3435 3284 327 246 77 62 chr15 8390225 8390355 -77305399 + L1MCa LINE L1 1933 2064 -4362 256 24 49 0 chr15 8390357 8390398 -77305356 + (TA)n Simple_repeat Simple_repeat 1 43 0 2427 65 0 40 chr15 8390399 8390723 -77305031 - AluY SINE Alu 0 311 1 239 325 83 17 chr15 8390729 8390849 -77304905 - L1MEd LINE L1 -5496 623 496 586 164 61 73 chr15 8390851 8391089 -77304665 + MLT1E3 LTR MaLR 1 285 -369 2853 106 27 12 chr15 8391135 8391549 -77304205 + MSTA LTR MaLR 1 420 -8 1017 226 41 79 chr15 8391556 8391781 -77303973 + MLT1E3 LTR MaLR 292 501 -123 2261 93 3 0 chr15 8391781 8392082 -77303672 - AluSp SINE Alu -11 302 1 1017 226 41 79 chr15 8392082 8392196 -77303558 + MLT1E3 LTR MaLR 501 618 -6 727 216 117 47 chr15 8393230 8393615 -77302139 + MLT1G3 LTR MaLR 68 483 -107 3910 162 33 7 chr15 8393655 8394385 -77301369 - L1MD1 LINE L1 0 6242 5494 2790 144 44 6 chr15 8394393 8394872 -77300882 - L1MB2 LINE L1 -4 6167 5671 198 0 0 0 chr15 8394880 8394902 -77300852 + (TA)n Simple_repeat Simple_repeat 2 23 0 1999 109 0 7 chr15 8394905 8395189 -77300565 - AluSq SINE Alu -31 282 1 5928 214 36 48 chr15 8395202 8395394 -77300360 - L1MD1 LINE L1 -1949 4197 4004 1876 134 7 0 chr15 8395394 8395671 -77300083 - AluSx SINE Alu -17 295 17 5928 214 36 48 chr15 8395671 8397126 -77298628 - L1MD1 LINE L1 -2142 4004 2571 2576 125 72 5 chr15 8397126 8397527 -77298227 - MSTA LTR MaLR 0 428 1 5928 214 36 48 chr15 8397527 8397705 -77298049 - L1MD1 LINE L1 -3575 2571 2392 5361 135 5 24 chr15 8397705 8398868 -77296886 + L1PA16 LINE L1 5015 6160 -6 297 230 95 32 chr15 8399017 8399143 -77296611 - L1M3d LINE L1 -5756 135 2 * 3239 223 115 91 chr15 8399135 8399617 -77296137 - L1MB2 LINE L1 -743 5403 4934 1711 166 3 19 chr15 8399617 8399930 -77295824 - AluJo SINE Alu -2 310 3 3239 223 115 91 chr15 8399930 8400152 -77295602 - L1MB2 LINE L1 -1212 4934 4719 1492 156 26 22 chr15 8400152 8400422 -77295332 - AluJo SINE Alu -30 282 12 3239 223 115 91 chr15 8400422 8400526 -77295228 - L1MB2 LINE L1 -1427 4719 4619 424 60 0 230 chr15 8400526 8400573 -77295181 + MADE1 DNA Mariner 4 18 -62 9727 62 6 76 chr15 8400573 8402063 -77293691 - SVA Other Other 0 1386 1 424 60 0 230 chr15 8402063 8402115 -77293639 + MADE1 DNA Mariner 18 80 0 3239 223 115 91 chr15 8402115 8402827 -77292927 - L1MB2 LINE L1 -1527 4619 3926 2194 149 86 8 chr15 8402827 8403224 -77292530 + MSTA LTR MaLR 1 428 0 3239 223 115 91 chr15 8403224 8403274 -77292480 - L1MB2 LINE L1 -2220 3926 3879 704 187 8 0 chr15 8403274 8403397 -77292357 + FLAM_C SINE Alu 6 129 -14 3239 223 115 91 chr15 8403397 8404361 -77291393 - L1MB2 LINE L1 -2267 3879 2751 1078 215 106 8 chr15 8404368 8404624 -77291130 + AluJo SINE Alu 9 289 -23 438 271 8 0 chr15 8404629 8404751 -77291003 - L1MB2 LINE L1 -3389 2757 2635 496 250 45 82 chr15 8404895 8405115 -77290639 - L1M4 LINE L1 -1986 4160 3949 207 0 0 0 chr15 8405205 8405228 -77290526 + (T)n Simple_repeat Simple_repeat 1 23 0 397 279 50 95 chr15 8405254 8405443 -77290311 - L1M4 LINE L1 -2230 3916 3747 1093 142 296 9 chr15 8405443 8405676 -77290078 - AluYa5 SINE Alu -1 300 1 397 279 50 95 chr15 8405676 8405823 -77289931 - L1M4 LINE L1 -2399 3747 3595 202 307 23 23 chr15 8406576 8406664 -77289090 - L2 LINE L2 -1323 1991 1904 975 260 157 34 chr15 8406673 8407239 -77288515 + L2 LINE L2 2369 3088 -225 1833 49 4 0 chr15 8407239 8407465 -77288289 - AluY SINE Alu -4 307 81 975 260 157 34 chr15 8407465 8407714 -77288040 + L2 LINE L2 3088 3305 -8 201 337 34 11 chr15 8410007 8410096 -77285658 + MIR3 SINE MIR 107 197 -11 3294 116 65 35 chr15 8410734 8411149 -77284605 + MER41C LTR ERV1 2 438 -116 2330 83 0 0 chr15 8411149 8411450 -77284304 - AluY SINE Alu -10 301 1 3294 116 65 35 chr15 8411450 8411571 -77284183 + MER41C LTR ERV1 438 554 0 443 294 101 24 chr15 8412326 8412574 -77283180 + L1ME3A LINE L1 5618 5884 -286 1651 143 52 11 chr15 8412583 8412870 -77282884 + AluJb SINE Alu 1 299 -13 4288 147 20 33 chr15 8412966 8413575 -77282179 - MER4E LTR ERV1 0 779 181 2196 108 3 0 chr15 8413575 8413882 -77281872 - AluSx SINE Alu -4 308 1 4288 147 20 33 chr15 8413882 8414061 -77281693 - MER4E LTR ERV1 -598 181 1 207 204 0 0 chr15 8414073 8414117 -77281637 + CT-rich Low_complexity Low_complexity 2 45 0 5004 88 44 0 chr15 8414707 8415369 -77280385 - LTR8 LTR ERV1 0 691 1 866 256 75 17 chr15 8415515 8415808 -77279946 - MER5C DNA MER1_type -8 316 7 4244 127 116 83 chr15 8415930 8416174 -77279580 - MER4D LTR ERV1 0 872 638 1877 148 3 0 chr15 8416174 8416464 -77279290 + AluSx SINE Alu 1 291 -21 4244 127 116 83 chr15 8416464 8416855 -77278899 - MER4D LTR ERV1 -234 638 200 1764 159 3 3 chr15 8416855 8417138 -77278616 + AluJb SINE Alu 1 283 -29 4244 127 116 83 chr15 8417138 8417345 -77278409 - MER4D LTR ERV1 -672 200 1 3768 106 23 25 chr15 8418560 8419065 -77276689 - MER61E LTR ERV1 0 569 64 2159 120 3 0 chr15 8419065 8419373 -77276381 + AluSg SINE Alu 2 310 0 3768 106 23 25 chr15 8419373 8419433 -77276321 - MER61E LTR ERV1 -505 64 5 470 143 95 0 chr15 8419522 8419606 -77276148 - MER103 DNA DNA -44 122 31 2408 38 20 0 chr15 8419979 8420271 -77275483 + AluY SINE Alu 1 298 -13 202 0 91 0 chr15 8421773 8421806 -77273948 + T-rich Low_complexity Low_complexity 5 40 0 314 260 197 16 chr15 8422198 8422325 -77273429 + MIR3 SINE MIR 7 156 -52 239 195 0 91 chr15 8422523 8422600 -77273154 - L2 LINE L2 -9 3263 3194 2558 153 11 68 chr15 8422601 8422796 -77272958 - LTR54 LTR ERV1 0 510 305 2204 94 3 3 chr15 8422796 8423093 -77272661 - AluSp SINE Alu -16 297 1 2558 153 11 68 chr15 8423093 8423438 -77272316 - LTR54 LTR ERV1 -205 305 1 1764 164 55 7 chr15 8423438 8423748 -77272006 - MER89-int LTR ERV1 -393 7144 6820 1110 101 5 101 chr15 8423760 8423977 -77271777 - MER30 DNA MER1_type -33 197 2 464 293 107 19 chr15 8423979 8424194 -77271560 - MER89-int LTR ERV1 -712 6825 6592 338 197 0 0 chr15 8424249 8424310 -77271444 - MER89-int LTR ERV1 -697 4174 4114 4813 193 108 65 chr15 8424355 8424782 -77270972 - MER89-int LTR ERV1 -514 5817 5410 2283 92 0 0 chr15 8424782 8425085 -77270669 + AluSp SINE Alu 1 303 -10 4813 193 108 65 chr15 8425085 8425340 -77270414 - MER89-int LTR ERV1 -921 5410 5168 1562 173 20 13 chr15 8425340 8425641 -77270113 - AluJb SINE Alu -9 303 1 4813 193 108 65 chr15 8425641 8426087 -77269667 - MER89-int LTR ERV1 -1163 5168 4743 1665 127 31 55 chr15 8426087 8426428 -77269326 + AluSx SINE Alu 1 334 0 4813 193 108 65 chr15 8426428 8427492 -77268262 - MER89-int LTR ERV1 -1588 4743 2391 523 178 207 7 chr15 8427503 8427638 -77268116 - MER34C LTR ERV1 -255 330 169 706 190 0 36 chr15 8427723 8427860 -77267894 - AluJo SINE Alu -178 134 3 321 226 36 24 chr15 8427867 8427951 -77267803 - MER89-int LTR ERV1 -3352 2911 2827 722 209 62 67 chr15 8427994 8428391 -77267363 - MER89-int LTR ERV1 -2696 2427 1719 1738 219 62 68 chr15 8428405 8428669 -77267085 - MER89-int LTR ERV1 -2946 2278 2014 1834 136 0 34 chr15 8428669 8428987 -77266767 + AluSx SINE Alu 1 308 0 2304 141 34 69 chr15 8428997 8429391 -77266363 - MSTB1 LTR MaLR 0 432 54 2027 105 0 43 chr15 8429391 8429716 -77266038 - AluSx SINE Alu -1 311 1 2304 141 34 69 chr15 8429716 8429769 -77265985 - MSTB1 LTR MaLR -378 54 1 1738 219 62 68 chr15 8429769 8430568 -77265186 - MER89-int LTR ERV1 -3219 2005 1193 307 247 0 14 chr15 8430621 8430694 -77265060 + MER57-int LTR ERV1 548 619 -6918 325 279 110 41 chr15 8430774 8430993 -77264761 - MER34C LTR ERV1 -192 393 160 186 43 0 0 chr15 8431079 8431102 -77264652 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 822 153 0 0 chr15 8431107 8431225 -77264529 - FLAM_C SINE Alu -15 118 1 262 281 42 13 chr15 8431225 8431327 -77264427 - MER89-int LTR ERV1 -3220 2726 829 317 239 53 62 chr15 8431820 8431933 -77263821 - MER89-int LTR ERV1 -5432 1369 1258 272 228 17 173 chr15 8432157 8432446 -77263308 - MER89-int LTR ERV1 -6761 776 533 700 281 106 33 chr15 8432565 8432867 -77262887 - MER89-int LTR ERV1 -4079 2252 1929 1531 145 71 74 chr15 8432897 8433234 -77262520 - LTR54 LTR ERV1 0 510 175 2463 144 58 5 chr15 8433839 8434249 -77261505 - MSTB1 LTR MaLR 0 432 1 33 0 0 0 chr15 8434350 8434383 -77261371 + AT_rich Low_complexity Low_complexity 1 33 0 301 134 0 45 chr15 8434383 8434450 -77261304 - L1MA8 LINE L1 -3 6288 6225 3058 142 21 56 chr15 8434632 8434787 -77260967 - MER34C LTR ERV1 -2 583 424 2088 92 27 14 chr15 8434787 8435082 -77260672 - AluSp SINE Alu -14 299 1 3058 142 21 56 chr15 8435082 8435530 -77260224 - MER34C LTR ERV1 -161 424 1 267 182 182 0 chr15 8435591 8435646 -77260108 - MIR3 SINE MIR -52 156 92 190 236 138 49 chr15 8435840 8435963 -77259791 + L2 LINE L2 3094 3227 -86 1593 139 66 0 chr15 8436101 8436374 -77259380 - AluSx SINE Alu -9 303 13 310 146 0 18 chr15 8436376 8436431 -77259323 - AluSq/x SINE Alu -163 139 86 1171 149 33 14 chr15 8436433 8436647 -77259107 - AluSx SINE Alu -94 218 1 2672 100 11 0 chr15 8436773 8437133 -77258621 - THE1B LTR MaLR 0 364 1 2925 168 163 7 chr15 8438197 8438774 -77256980 - Tigger7 DNA MER2_type -1820 667 1 3805 147 11 72 chr15 8438802 8439538 -77256216 - LTR8 LTR ERV1 0 691 1 189 226 43 32 chr15 8439818 8439881 -77255873 - MIR SINE MIR -97 165 103 356 179 15 0 chr15 8440204 8440271 -77255483 - MER116 DNA Mariner 0 80 13 864 227 23 0 chr15 8440904 8441076 -77254678 - MER45A DNA AcHobo -2 176 1 226 301 41 0 chr15 8441761 8441834 -77253920 + MIR SINE MIR 45 120 -88 202 255 157 0 chr15 8442700 8442751 -77253003 + MIR SINE MIR 93 151 -111 2015 115 0 11 chr15 8442805 8443120 -77252634 - AluSx SINE Alu 0 312 1 497 239 30 138 chr15 8443446 8443642 -77252112 - L1M4 LINE L1 -3467 2679 2463 2082 122 0 3 chr15 8443642 8443953 -77251801 - AluSx SINE Alu -2 310 1 497 239 30 138 chr15 8443953 8444045 -77251709 - L1M4 LINE L1 -3683 2463 2423 2769 10 0 0 chr15 8444045 8444353 -77251401 - AluYa5 SINE Alu -3 308 1 497 239 30 138 chr15 8444353 8444368 -77251386 - L1M4 LINE L1 -3723 2423 2408 11323 214 59 60 chr15 8444373 8444594 -77251160 - L1MC2 LINE L1 -15 6609 6389 2208 104 0 13 chr15 8444594 8444910 -77250844 - AluSx SINE Alu 0 312 1 11323 214 59 60 chr15 8444910 8445127 -77250627 - L1MC2 LINE L1 -235 6389 6173 1910 148 0 3 chr15 8445127 8445430 -77250324 - AluSx SINE Alu -10 302 1 11323 214 59 60 chr15 8445430 8445494 -77250260 - L1MC2 LINE L1 -451 6173 6110 1652 150 0 4 chr15 8445494 8445771 -77249983 - AluSx SINE Alu 0 305 30 11323 214 59 60 chr15 8445771 8448553 -77247201 - L1MC2 LINE L1 -514 6110 3326 2021 121 7 0 chr15 8448553 8448850 -77246904 - AluSg1 SINE Alu -5 304 6 11323 214 59 60 chr15 8448850 8450527 -77245227 - L1MC2 LINE L1 -3298 3326 1648 2241 80 0 3 chr15 8450527 8450844 -77244910 - AluSp SINE Alu 0 316 1 11323 214 59 60 chr15 8450844 8450868 -77244886 - L1MC2 LINE L1 -4976 1648 1625 1222 167 32 137 chr15 8450868 8451276 -77244478 + MLT1A1 LTR MaLR 1 365 0 11323 214 59 60 chr15 8451276 8451511 -77244243 - L1MC2 LINE L1 -4999 1625 1391 2050 106 13 16 chr15 8451511 8451823 -77243931 - AluSx SINE Alu -1 311 1 11323 214 59 60 chr15 8451823 8452102 -77243652 - L1MC2 LINE L1 -5233 1391 1113 306 0 0 0 chr15 8452102 8452136 -77243618 + (TG)n Simple_repeat Simple_repeat 2 35 0 2074 123 0 10 chr15 8452137 8452302 -77243452 - AluSx SINE Alu -13 299 137 2204 95 0 0 chr15 8452302 8452598 -77243156 - AluSq SINE Alu -17 296 1 2074 123 0 10 chr15 8452598 8452734 -77243020 - AluSx SINE Alu -175 137 1 11323 214 59 60 chr15 8452734 8453164 -77242590 - L1MC2 LINE L1 -5511 1113 684 1776 138 22 0 chr15 8453164 8453475 -77242279 - AluSq SINE Alu 0 318 2 11323 214 59 60 chr15 8453475 8453673 -77242081 - L1MC2 LINE L1 -5940 684 487 1855 188 34 11 chr15 8453673 8454030 -77241724 + MLT1A1 LTR MaLR 1 365 0 11323 214 59 60 chr15 8454030 8454495 -77241259 - L1MC2 LINE L1 -6137 487 2 1949 124 0 10 chr15 8454540 8454830 -77240924 - AluSx SINE Alu -25 287 1 532 313 86 4 chr15 8454890 8455168 -77240586 - L1MEc LINE L1 -4579 1817 1517 1061 165 0 0 chr15 8455288 8455464 -77240290 + AluJo SINE Alu 119 294 -18 572 289 89 91 chr15 8455695 8456337 -77239417 + L2 LINE L2 2645 3313 0 1339 174 113 43 chr15 8456933 8457077 -77238677 - AluJo SINE Alu 0 302 170 2169 92 3 10 chr15 8457077 8457383 -77238371 - AluSg SINE Alu -6 304 1 1339 174 113 43 chr15 8457383 8457520 -77238234 - AluJo SINE Alu -132 170 1 545 284 97 40 chr15 8457865 8458341 -77237413 - HAL1 LINE L1 -1191 1316 814 1656 145 55 3 chr15 8459179 8459489 -77236265 + L1MA7 LINE L1 5960 6285 -6 2158 102 0 0 chr15 8459557 8459874 -77235880 + AluSx SINE Alu 1 317 0 2914 167 33 0 chr15 8459983 8460497 -77235257 - L1MB3 LINE L1 -101 6082 5552 512 273 32 18 chr15 8460615 8460835 -77234919 - L1MEc LINE L1 -4849 1547 1325 * 2340 73 22 3 chr15 8460833 8461150 -77234604 + L1PA13 LINE L1 5725 6047 -116 2515 116 108 28 chr15 8461150 8461583 -77234171 + LTR12 LTR ERV1 1 468 -246 439 209 69 0 chr15 8461613 8461727 -77234027 + L1PA13 LINE L1 6041 6161 -2 733 176 25 6 chr15 8462379 8462538 -77233216 + MER103 DNA DNA 3 164 -2 1775 110 24 0 chr15 8462825 8463079 -77232675 - AluSp SINE Alu -53 260 1 316 200 24 0 chr15 8464356 8464441 -77231313 + GA-rich Low_complexity Low_complexity 2 88 0 2118 106 0 10 chr15 8465565 8465866 -77229888 - AluSx SINE Alu -14 298 1 224 146 0 21 chr15 8465868 8465916 -77229838 + (TTTTC)n Simple_repeat Simple_repeat 2 48 0 517 68 0 0 chr15 8465917 8465991 -77229763 - Alu SINE Alu 0 311 238 1868 102 0 0 chr15 8466094 8466348 -77229406 + AluSx SINE Alu 55 308 -4 3015 217 39 18 chr15 8466353 8467193 -77228561 + L1MC5 LINE L1 2842 3699 -2447 1974 249 107 89 chr15 8467201 8467763 -77227991 + L1MC5 LINE L1 5425 5975 -1986 2163 108 10 0 chr15 8467763 8468068 -77227686 + AluSq SINE Alu 1 308 -5 1974 249 107 89 chr15 8468068 8468725 -77227029 + L1MC5 LINE L1 5975 6619 -1342 366 42 0 0 chr15 8468725 8468773 -77226981 + (CA)n Simple_repeat Simple_repeat 1 48 0 1974 249 107 89 chr15 8468773 8469305 -77226449 + L1MC5 LINE L1 6619 7184 -777 2421 65 0 3 chr15 8469305 8469612 -77226142 + AluY SINE Alu 1 306 -5 1974 249 107 89 chr15 8469612 8469813 -77225941 + L1MC5 LINE L1 7184 7380 -581 2183 101 0 0 chr15 8470358 8470654 -77225100 - AluSx SINE Alu -2 310 15 783 219 193 0 chr15 8470660 8470898 -77224856 - MER33 DNA MER1_type -40 284 1 215 245 163 10 chr15 8471587 8471685 -77224069 + MIR SINE MIR 36 148 -114 250 245 324 0 chr15 8473191 8473293 -77222461 + L1ME4a LINE L1 5530 5664 -457 239 303 0 0 chr15 8473345 8473421 -77222333 + L1ME4a LINE L1 5734 5809 -361 389 315 85 47 chr15 8473430 8473665 -77222089 + L1ME4a LINE L1 5874 6117 -4 430 135 0 0 chr15 8473679 8473753 -77222001 - L1MA4 LINE L1 -6 6294 6221 2154 92 16 3 chr15 8473824 8474128 -77221626 + AluSc SINE Alu 1 308 -1 201 94 0 0 chr15 8474780 8474812 -77220942 + (TG)n Simple_repeat Simple_repeat 2 33 0 1897 107 38 17 chr15 8475756 8476045 -77219709 - AluSx SINE Alu -17 295 1 1116 193 3 134 chr15 8476069 8476450 -77219304 - MER33 DNA MER1_type -4 320 1 306 247 82 87 chr15 8476556 8476775 -77218979 - L1ME LINE L1 -302 5819 5602 403 186 20 10 chr15 8478016 8478118 -77217636 + CT-rich Low_complexity Low_complexity 3 105 0 2157 118 0 6 chr15 8478122 8478437 -77217317 - AluSq SINE Alu 0 313 1 2244 79 0 7 chr15 8478485 8478796 -77216958 - AluSx SINE Alu 0 312 1 4653 186 27 21 chr15 8478813 8480294 -77215460 - L1MB5 LINE L1 -8 6166 4680 2033 128 3 3 chr15 8480296 8480602 -77215152 + AluSx SINE Alu 1 306 -6 442 226 182 13 chr15 8480757 8480916 -77214838 - L1MB5 LINE L1 -1729 4417 4232 2329 101 0 0 chr15 8480919 8481227 -77214527 - AluSx SINE Alu -4 308 1 728 282 114 21 chr15 8481252 8481626 -77214128 - L1ME3A LINE L1 -192 5972 5571 187 179 95 53 chr15 8481974 8482069 -77213685 + L2 LINE L2 2921 3019 -253 207 0 0 0 chr15 8482075 8482098 -77213656 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 216 0 0 0 chr15 8482353 8482377 -77213377 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 533 326 41 9 chr15 8483206 8483427 -77212327 - MIR SINE MIR -34 228 1 2147 126 0 0 chr15 8483540 8483849 -77211905 - AluSg SINE Alu -1 309 1 351 265 29 29 chr15 8484387 8484523 -77211231 - MER69A DNA AcHobo -14 163 28 508 169 169 14 chr15 8485061 8485203 -77210551 - MER96B DNA MER1_type? -241 176 13 3622 126 60 27 chr15 8485555 8486152 -77209602 - LTR12 LTR ERV1 -97 617 1 4000 167 102 20 chr15 8486195 8486653 -77209101 - L1MB3 LINE L1 0 6183 5764 2261 75 0 31 chr15 8486653 8486974 -77208780 + AluY SINE Alu 1 311 0 4000 167 102 20 chr15 8486974 8487424 -77208330 - L1MB3 LINE L1 -419 5764 5201 305 309 73 12 chr15 8489036 8489201 -77206553 - L1ME4a LINE L1 -3 6118 5944 2126 92 3 49 chr15 8489218 8489545 -77206209 + AluSx SINE Alu 1 312 0 2262 158 92 15 chr15 8489558 8490015 -77205739 + L1MB7 LINE L1 5693 6184 0 188 340 11 64 chr15 8490257 8490351 -77205403 - MIR SINE MIR -45 217 129 319 264 56 0 chr15 8491271 8491396 -77204358 + L2 LINE L2 1707 1838 -1476 195 286 0 0 chr15 8491749 8491791 -77203963 - MIR SINE MIR -115 147 106 186 254 45 0 chr15 8492624 8492691 -77203063 - L2 LINE L2 -247 3066 2997 351 230 0 66 chr15 8493451 8493603 -77202151 + G-rich Low_complexity Low_complexity 3 144 0 3183 219 109 16 chr15 8493632 8494507 -77201247 - L1MC4 LINE L1 -432 7610 6655 1314 241 92 50 chr15 8494512 8495013 -77200741 + MLT1F LTR MaLR 21 542 0 1300 226 80 12 chr15 8495019 8495355 -77200399 - L1MC4 LINE L1 -1340 6702 6344 390 150 28 39 chr15 8496294 8496474 -77199280 + (CA)n Simple_repeat Simple_repeat 1 178 0 1479 242 38 10 chr15 8498387 8498771 -77196983 + L1MB8 LINE L1 89 553 -6302 * 8233 220 52 20 chr15 8498768 8502233 -77193521 + L1MB8 LINE L1 3110 6465 -524 297 0 0 0 chr15 8502233 8502266 -77193488 + (TC)n Simple_repeat Simple_repeat 2 34 0 * 351 0 0 0 chr15 8502265 8502304 -77193450 + (TA)n Simple_repeat Simple_repeat 1 39 0 8233 220 52 20 chr15 8502266 8502305 -77193449 + L1MB8 LINE L1 6465 6501 -488 2073 124 0 0 chr15 8502305 8502603 -77193151 - AluSx SINE Alu -14 298 1 8233 220 52 20 chr15 8502603 8502660 -77193094 + L1MB8 LINE L1 6501 6977 -12 193 187 11 66 chr15 8502669 8502760 -77192994 + GA-rich Low_complexity Low_complexity 3 88 0 1397 180 0 31 chr15 8503436 8503697 -77192057 + AluJb SINE Alu 13 265 -47 802 152 5 105 chr15 8505129 8505298 -77190456 - MER53 DNA DNA 0 189 43 2025 177 11 30 chr15 8505298 8505515 -77190239 - MLT1A1 LTR MaLR 0 365 156 2193 103 3 10 chr15 8505515 8505825 -77189929 - AluSq SINE Alu -5 308 1 2025 177 11 30 chr15 8505825 8505979 -77189775 - MLT1A1 LTR MaLR -209 156 1 802 152 5 105 chr15 8505979 8506019 -77189735 - MER53 DNA DNA -146 43 1 248 338 149 14 chr15 8506613 8506761 -77188993 - MIR SINE MIR -1 261 94 2814 181 68 10 chr15 8507252 8507843 -77187911 - L1MD1 LINE L1 0 6242 5618 206 241 19 19 chr15 8509418 8509472 -77186282 + L2 LINE L2 3214 3267 -5 201 303 117 56 chr15 8510109 8510271 -77185483 - MIR SINE MIR -59 203 32 1893 147 26 10 chr15 8510531 8510837 -77184917 + AluJb SINE Alu 1 311 -1 2234 102 0 9 chr15 8512296 8512611 -77183143 + AluSq SINE Alu 1 312 -1 348 217 15 31 chr15 8514120 8514387 -77181367 + (TG)n Simple_repeat Simple_repeat 1 262 0 1756 177 0 3 chr15 8514577 8514882 -77180872 + AluJo SINE Alu 1 304 -8 2015 118 10 14 chr15 8515188 8515485 -77180269 - AluSx SINE Alu -16 296 1 1552 158 67 64 chr15 8516194 8516568 -77179186 - THE1C LTR MaLR 0 375 1 2579 76 12 3 chr15 8516739 8517083 -77178671 - L1PA13 LINE L1 -12 6151 5805 312 317 19 0 chr15 8517212 8517316 -77178438 - HAL1 LINE L1 -711 1796 1691 591 143 0 0 chr15 8517454 8517538 -77178216 - AluS SINE Alu -228 85 2 749 158 0 0 chr15 8517553 8517680 -77178074 - L1M4 LINE L1 -1117 5029 4903 908 339 128 17 chr15 8517821 8518534 -77177220 - L2 LINE L2 -564 2750 1959 264 325 17 8 chr15 8519241 8519358 -77176396 + (TG)n Simple_repeat Simple_repeat 1 118 0 227 302 16 0 chr15 8519526 8519589 -77176165 + GA-rich Low_complexity Low_complexity 3 66 0 1684 158 4 0 chr15 8521203 8521482 -77174272 - AluJb SINE Alu -12 300 21 240 35 0 0 chr15 8521741 8521770 -77173984 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1902 129 11 0 chr15 8521773 8522051 -77173703 - AluSx SINE Alu -31 281 1 465 270 131 42 chr15 8525003 8525182 -77170572 - L1M4 LINE L1 -2673 3473 3311 2096 122 0 26 chr15 8525182 8525494 -77170260 - AluSx SINE Alu -8 304 1 465 270 131 42 chr15 8525494 8525978 -77169776 - L1M4 LINE L1 -2835 3311 2751 22 0 0 0 chr15 8526175 8526197 -77169557 + AT_rich Low_complexity Low_complexity 1 22 0 2188 60 4 0 chr15 8526493 8526797 -77168957 + AluY SINE Alu 1 305 0 229 328 92 8 chr15 8526871 8527002 -77168752 + MIR SINE MIR 70 211 -51 211 200 0 0 chr15 8527764 8527799 -77167955 + polypurine Low_complexity Low_complexity 1 35 0 880 128 44 61 chr15 8528355 8528535 -77167219 - L1MCa LINE L1 -5736 690 514 2217 69 17 3 chr15 8528535 8528825 -77166929 + AluY SINE Alu 1 294 -17 282 277 71 19 chr15 8529061 8529216 -77166538 - L1ME3A LINE L1 -15 6155 5993 190 293 67 0 chr15 8529299 8529374 -77166380 + L2 LINE L2 3137 3216 -56 550 350 35 0 chr15 8529914 8530114 -77165640 - MIR SINE MIR -28 234 28 711 271 30 48 chr15 8530669 8530984 -77164770 + L1MEc LINE L1 1426 1747 -829 31 26 0 0 chr15 8531173 8531211 -77164543 + AT_rich Low_complexity Low_complexity 1 38 0 1926 115 4 4 chr15 8531243 8531550 -77164204 - AluSx SINE Alu 0 312 6 227 250 140 30 chr15 8533339 8533439 -77162315 + MER5A DNA MER1_type 74 184 -5 388 200 0 24 chr15 8533585 8533670 -77162084 - MER69 DNA AcHobo -1135 91 9 892 117 0 29 chr15 8534539 8534676 -77161078 + AluSq/x SINE Alu 1 133 -179 1796 150 3 7 chr15 8534679 8534985 -77160769 + AluSx SINE Alu 1 305 -7 326 246 234 50 chr15 8535327 8535648 -77160106 - LTR16A1 LTR ERVL -77 380 1 224 250 164 39 chr15 8536783 8536887 -77158867 + L3b LINE CR1 1334 1450 -133 225 221 12 23 chr15 8537513 8537599 -77158155 + (TA)n Simple_repeat Simple_repeat 2 86 0 180 0 0 0 chr15 8537959 8537979 -77157775 + (A)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr15 8540549 8540569 -77155185 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1029 69 0 50 chr15 8541199 8541359 -77154395 - AluY SINE Alu -3 308 157 385 333 8 0 chr15 8542237 8542357 -77153397 - MIR3 SINE MIR -3 205 85 198 284 52 75 chr15 8544357 8544491 -77151263 + L2 LINE L2 3139 3269 -3 283 308 155 23 chr15 8546243 8546936 -77148818 + L2 LINE L2 2383 3248 -24 1361 152 45 26 chr15 8546943 8547207 -77148547 - AluJo SINE Alu -1 311 43 934 142 0 8 chr15 8547503 8547637 -77148117 - FLAM_C SINE Alu -10 133 1 2057 145 0 7 chr15 8548258 8548568 -77147186 - AluJo SINE Alu 0 312 5 1297 145 20 5 chr15 8550017 8550217 -77145537 + AluSq SINE Alu 1 203 -110 565 75 0 0 chr15 8550217 8550284 -77145470 + AluSq/x SINE Alu 69 135 -178 2091 115 13 13 chr15 8550284 8550588 -77145166 + AluSx SINE Alu 1 304 -8 1897 134 36 0 chr15 8551030 8551307 -77144447 + AluSx SINE Alu 1 287 -25 2081 124 13 3 chr15 8551315 8551621 -77144133 + AluSq SINE Alu 1 309 -4 2223 98 3 0 chr15 8551635 8551968 -77143786 + AluSx SINE Alu 1 334 0 2314 72 0 14 chr15 8552673 8552963 -77142791 - AluSx SINE Alu -26 286 1 243 0 0 0 chr15 8552996 8553023 -77142731 + (TG)n Simple_repeat Simple_repeat 2 28 0 197 241 108 24 chr15 8554012 8554095 -77141659 - L2 LINE L2 -522 2792 2703 2214 107 3 19 chr15 8554209 8554526 -77141228 - AluSx SINE Alu 0 312 1 4740 212 49 72 chr15 8554950 8556278 -77139476 + L1M4 LINE L1 1 1297 -5245 3537 220 33 20 chr15 8556300 8556341 -77139413 + L1M4 LINE L1 1239 1278 -5368 1731 142 9 99 chr15 8556341 8556673 -77139081 + AluJo SINE Alu 1 302 0 3537 220 33 20 chr15 8556673 8557686 -77138068 + L1M4 LINE L1 1278 2397 -4249 918 145 0 0 chr15 8557688 8557819 -77137935 + AluSx SINE Alu 1 131 -182 1009 139 0 13 chr15 8557925 8558083 -77137671 + AluSx SINE Alu 140 295 -14 3508 230 23 20 chr15 8558085 8558195 -77137559 + L1M4 LINE L1 2389 2497 -4147 788 220 0 0 chr15 8558195 8558327 -77137427 + FLAM_A SINE Alu 1 132 -1 3508 230 23 20 chr15 8558327 8559376 -77136378 + L1M4 LINE L1 2497 3547 -3097 3801 233 68 38 chr15 8559451 8560406 -77135348 + L1MDb LINE L1 775 1750 -4656 738 194 8 0 chr15 8560406 8560535 -77135219 - FLAM_A SINE Alu -3 130 1 3801 233 68 38 chr15 8560535 8561036 -77134718 + L1MDb LINE L1 1750 2234 -4172 3581 223 73 60 chr15 8561050 8562054 -77133700 + L1M4 LINE L1 4118 5107 -1557 438 69 0 0 chr15 8562054 8562112 -77133642 + (TTG)n Simple_repeat Simple_repeat 2 59 0 785 174 0 0 chr15 8562114 8562229 -77133525 - FLAM_C SINE Alu -28 115 1 3581 223 73 60 chr15 8562229 8563256 -77132498 + L1M4 LINE L1 5107 6286 -378 2240 99 0 0 chr15 8563272 8563582 -77132172 + AluSx SINE Alu 2 311 0 204 118 29 0 chr15 8564272 8564306 -77131448 + G-rich Low_complexity Low_complexity 4 38 0 2185 105 0 0 chr15 8564609 8564929 -77130825 - AluSx SINE Alu 0 320 1 22 35 0 0 chr15 8565953 8565982 -77129772 + AT_rich Low_complexity Low_complexity 1 29 0 674 241 55 19 chr15 8566210 8566391 -77129363 + MIR SINE MIR 12 192 -62 1027 121 0 0 chr15 8568282 8568414 -77127340 + FLAM_C SINE Alu 2 133 0 330 287 101 32 chr15 8570774 8570962 -77124792 - L1ME3A LINE L1 0 6170 5970 595 153 40 48 chr15 8570982 8571106 -77124648 - MLT1G LTR MaLR 0 590 468 881 200 40 0 chr15 8571107 8571257 -77124497 + MER63A DNA MER1_type 55 210 0 1276 244 168 21 chr15 8571257 8571643 -77124111 - MLT1G LTR MaLR -130 460 18 2250 62 24 0 chr15 8571643 8571934 -77123820 - AluYa5 SINE Alu -13 298 1 1392 226 108 46 chr15 8572030 8572551 -77123203 - L1MC5 LINE L1 -430 7531 6979 794 191 31 6 chr15 8572553 8572715 -77123039 + MLT1A2 LTR MaLR 209 374 0 2146 99 19 19 chr15 8572861 8573173 -77122581 - AluSx SINE Alu 0 312 1 669 285 40 59 chr15 8573178 8573634 -77122120 - HAL1b LINE L1 -841 507 61 2583 62 0 0 chr15 8574053 8574362 -77121392 - AluY SINE Alu -2 309 1 995 265 189 28 chr15 8575096 8575730 -77120024 + L2 LINE L2 2549 3313 0 1886 109 0 7 chr15 8575894 8576168 -77119586 + AluSx SINE Alu 40 311 -1 1381 215 25 104 chr15 8576299 8576703 -77119051 + MLT1A2 LTR MaLR 3 374 0 827 198 18 12 chr15 8577006 8577173 -77118581 + AluJb SINE Alu 122 289 -23 312 242 85 103 chr15 8577717 8577940 -77117814 + L1M2 LINE L1 1181 1399 -5450 614 147 55 156 chr15 8579418 8579656 -77116098 - MER20 DNA MER1_type -5 214 1 2440 57 0 10 chr15 8579864 8580162 -77115592 + AluY SINE Alu 1 295 -16 23 0 0 0 chr15 8580284 8580307 -77115447 + AT_rich Low_complexity Low_complexity 1 23 0 2373 70 13 16 chr15 8580731 8581043 -77114711 - AluSq SINE Alu -2 311 1 233 35 0 0 chr15 8581248 8581277 -77114477 - U7 snRNA snRNA -33 30 2 2033 228 42 40 chr15 8631312 8631904 -77063850 - L1MC3 LINE L1 -709 7076 6484 1063 222 43 0 chr15 8632222 8632429 -77063325 - MER58A DNA MER1_type 0 224 9 1576 98 98 70 chr15 8632708 8632993 -77062761 - AluSx SINE Alu -19 293 1 275 359 36 24 chr15 8633495 8633662 -77062092 + MIR SINE MIR 20 188 -74 400 273 49 33 chr15 8633881 8634064 -77061690 - L2 LINE L2 0 3313 3128 2183 64 4 4 chr15 8634536 8634846 -77060908 - AluY SINE Alu 0 310 1 1318 220 43 69 chr15 8634870 8635288 -77060466 + MLT1C LTR MaLR 3 409 -58 489 183 75 0 chr15 8635287 8635364 -77060390 - MLT2D LTR ERVL -183 231 148 2231 150 106 10 chr15 8635364 8635751 -77060003 - MSTB1 LTR MaLR 0 432 9 729 193 40 0 chr15 8635757 8635907 -77059847 - MLT2D LTR ERVL -254 160 5 1549 163 52 7 chr15 8635910 8636217 -77059537 - ERVL-D LTR ERVL -7 5757 5437 2244 225 39 4 chr15 8636300 8636811 -77058943 - ERVL-D LTR ERVL -320 5444 4916 * 9918 216 42 7 chr15 8636799 8638812 -77056942 - ERVL-D LTR ERVL -1313 4451 2367 2398 65 31 0 chr15 8638812 8639106 -77056648 - AluY SINE Alu -8 303 1 2091 175 95 5 chr15 8639113 8639524 -77056230 - L1MC1 LINE L1 -9 6324 5877 1386 251 50 19 chr15 8639505 8639923 -77055831 - L1M4 LINE L1 -1008 5138 4708 * 2818 225 17 20 chr15 8639928 8640375 -77055379 - ERVL-D LTR ERVL -3391 2373 1927 2147 132 0 6 chr15 8640375 8640686 -77055068 + AluSg SINE Alu 1 309 -1 2818 225 17 20 chr15 8640686 8640837 -77054917 - ERVL-D LTR ERVL -3837 1927 1777 11367 191 14 5 chr15 8640855 8642928 -77052826 + ERVL-B1 LTR ERVL 3668 5757 -7 1462 212 14 98 chr15 8642928 8643348 -77052406 + MLT2B1 LTR ERVL 1 385 -135 586 281 17 17 chr15 8643353 8643531 -77052223 + Ricksha DNA DNA 727 904 -2342 357 253 72 75 chr15 8644043 8644128 -77051626 + L1M4b LINE L1 11 95 -6764 2589 66 0 0 chr15 8644128 8644433 -77051321 - AluY SINE Alu -6 305 1 357 253 72 75 chr15 8644433 8644579 -77051175 + L1M4b LINE L1 95 241 -6618 251 319 60 0 chr15 8644585 8644701 -77051053 + L1M4b LINE L1 700 822 -6037 1413 277 41 76 chr15 8644717 8645013 -77050741 + L1M4b LINE L1 798 1103 -5752 2504 63 0 0 chr15 8645013 8645315 -77050439 - AluY SINE Alu -9 302 1 1413 277 41 76 chr15 8645315 8646070 -77049684 + L1M4b LINE L1 1103 1812 -5043 384 303 66 31 chr15 8646242 8646724 -77049030 - L1M4 LINE L1 -2392 3754 3256 2308 92 7 0 chr15 8646750 8647053 -77048701 + AluSx SINE Alu 1 305 -7 2494 84 0 0 chr15 8647071 8647380 -77048374 + AluY SINE Alu 3 311 0 630 202 229 0 chr15 8647392 8647580 -77048174 - LTR39 LTR ERV1 -552 231 1 3692 197 30 77 chr15 8647580 8648631 -77047123 - HERVL74 LTR ERVL -809 4876 3875 592 187 168 0 chr15 8648631 8648786 -77046968 - LTR47A LTR ERVL -11 441 261 737 244 38 14 chr15 8649417 8649626 -77046128 - HERVL74 LTR ERVL -1936 3749 3536 904 282 57 4 chr15 8649637 8649917 -77045837 - HERVL74 LTR ERVL -2261 3424 3130 1596 224 9 3 chr15 8649927 8650276 -77045478 + MLT1A1 LTR MaLR 15 365 0 3870 213 41 63 chr15 8650280 8650881 -77044873 + MLT1A1-int LTR MaLR 4 617 -1118 1571 196 0 41 chr15 8650881 8651172 -77044582 + AluJo SINE Alu 3 281 -31 204 40 0 0 chr15 8651172 8651197 -77044557 + (GGAGAA)n Simple_repeat Simple_repeat 3 27 0 3870 213 41 63 chr15 8651197 8651715 -77044039 + MLT1A1-int LTR MaLR 615 1099 -636 1574 218 33 3 chr15 8651720 8652051 -77043703 + MLT1A1 LTR MaLR 25 365 0 1079 209 25 0 chr15 8652051 8652286 -77043468 - HERVL74 LTR ERVL -3657 2028 1788 1815 176 22 6 chr15 8652289 8652652 -77043102 + LTR57 LTR ERVL 3 371 -40 201 343 29 0 chr15 8653479 8653549 -77042205 + L2 LINE L2 3186 3257 -15 1488 166 22 47 chr15 8654164 8654484 -77041270 - AluJb SINE Alu 0 312 1 243 304 247 15 chr15 8657171 8657434 -77038320 + L3 LINE CR1 1244 1567 -10 207 391 45 30 chr15 8657839 8657972 -77037782 - L2 LINE L2 -44 3228 3094 763 224 84 70 chr15 8660148 8660447 -77035307 + L2 LINE L2 3008 3310 -3 440 297 94 42 chr15 8661781 8661993 -77033761 - MIR SINE MIR -26 236 14 387 0 0 0 chr15 8662032 8662075 -77033679 + (TG)n Simple_repeat Simple_repeat 2 44 0 257 371 64 50 chr15 8662349 8662489 -77033265 - L2 LINE L2 -5 3267 3126 22 35 0 0 chr15 8663326 8663355 -77032399 + AT_rich Low_complexity Low_complexity 1 29 0 202 241 161 46 chr15 8665460 8665547 -77030207 + MER5B DNA MER1_type 3 99 -79 521 273 119 92 chr15 8666381 8666718 -77029036 - L1M4 LINE L1 -1972 4174 3829 384 77 0 0 chr15 8666917 8666969 -77028785 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 2117 89 3 28 chr15 8666969 8667260 -77028494 - AluY SINE Alu -26 285 2 740 133 0 16 chr15 8667404 8667532 -77028222 + MER3 DNA MER1_type 67 192 -17 2180 93 7 23 chr15 8669069 8669369 -77026385 + AluSx SINE Alu 1 295 -17 216 67 0 0 chr15 8669561 8669591 -77026163 + (GGA)n Simple_repeat Simple_repeat 3 32 0 30 45 0 0 chr15 8669832 8669876 -77025878 + AT_rich Low_complexity Low_complexity 1 44 0 810 230 90 22 chr15 8669923 8670288 -77025466 - L1MC5 LINE L1 -304 7657 7268 442 257 104 25 chr15 8670452 8670693 -77025061 - L1MC5 LINE L1 -745 7216 6957 493 329 69 83 chr15 8672735 8672891 -77022863 + L2 LINE L2 2842 2999 -273 2068 101 61 0 chr15 8672891 8673169 -77022585 - AluSx SINE Alu -17 295 1 493 329 69 83 chr15 8673169 8673447 -77022307 + L2 LINE L2 2999 3270 -2 641 316 53 4 chr15 8673920 8674167 -77021587 + L2 LINE L2 2815 3073 -240 537 214 0 0 chr15 8674258 8674361 -77021393 + U6 snRNA snRNA 4 106 -1 2297 81 0 3 chr15 8675042 8675340 -77020414 + AluSg SINE Alu 3 299 -11 363 250 173 10 chr15 8675583 8675687 -77020067 + L2 LINE L2 3193 3313 0 1122 224 97 24 chr15 8677077 8677457 -77018297 - L1MD2 LINE L1 -13 6346 5939 2311 102 0 0 chr15 8677520 8677813 -77017941 + AluSx SINE Alu 1 293 -19 563 198 78 0 chr15 8677825 8677941 -77017813 + FLAM_C SINE Alu 1 125 -18 1369 205 31 14 chr15 8677951 8678244 -77017510 + AluJo SINE Alu 1 298 -14 334 194 9 4 chr15 8678289 8678397 -77017357 + Tigger5 DNA MER2_type 44 199 -2124 2156 105 24 0 chr15 8678811 8679106 -77016648 + AluSx SINE Alu 1 302 -10 1807 172 30 15 chr15 8679531 8679868 -77015886 - MER2 DNA MER2_type -1 343 2 2306 95 0 3 chr15 8679926 8680222 -77015532 - AluSx SINE Alu -17 295 1 1471 150 213 8 chr15 8680533 8680933 -77014821 - L1MB7 LINE L1 0 6184 5703 * 1704 225 135 16 chr15 8680931 8681679 -77014075 - L1M4 LINE L1 -1638 4508 3638 360 182 0 0 chr15 8684377 8684443 -77011311 - MER92C LTR ERV1 0 554 489 1140 161 0 0 chr15 8684629 8684803 -77010951 + AluJb SINE Alu 109 282 -30 1903 159 7 3 chr15 8685585 8685881 -77009873 - AluJb SINE Alu -15 297 1 2367 86 0 13 chr15 8686025 8686328 -77009426 - AluSg SINE Alu -11 299 1 21 0 0 0 chr15 8687512 8687533 -77008221 + AT_rich Low_complexity Low_complexity 1 21 0 2231 88 3 14 chr15 8692411 8692708 -77003046 - AluY SINE Alu -17 294 1 2212 103 0 19 chr15 8692850 8693160 -77002594 + AluSx SINE Alu 1 304 -8 1839 189 88 8 chr15 8693628 8694015 -77001739 + MER47B DNA MER2_type 1 418 0 266 286 125 72 chr15 8694094 8694349 -77001405 + L2 LINE L2 2670 3046 -267 240 222 56 0 chr15 8694416 8694470 -77001284 + L2 LINE L2 3196 3252 -61 422 266 95 6 chr15 8694536 8694922 -77000832 + L1MEc LINE L1 1226 1672 -4724 1210 112 77 0 chr15 8694924 8695120 -77000634 + MER2 DNA MER2_type 1 211 -134 460 248 58 15 chr15 8695235 8695270 -77000484 + L1MEc LINE L1 1675 1707 -4689 1848 168 0 7 chr15 8695270 8695568 -77000186 - AluJb SINE Alu 0 312 17 460 248 58 15 chr15 8695568 8695669 -77000085 + L1MEc LINE L1 1707 1817 -4579 629 233 149 4 chr15 8695674 8695923 -76999831 + L1MEc LINE L1 1856 2140 -4256 987 185 11 38 chr15 8695929 8696113 -76999641 + AluJb SINE Alu 1 179 -133 4487 228 99 18 chr15 8696113 8696569 -76999185 + L1MEc LINE L1 2168 2585 -3630 1582 162 86 14 chr15 8696569 8696859 -76998895 + AluJb SINE Alu 1 311 -1 4487 228 99 18 chr15 8696859 8697588 -76998166 + L1MEc LINE L1 2585 3492 -2723 2080 114 13 35 chr15 8697588 8697905 -76997849 + AluSx SINE Alu 1 310 -2 4487 228 99 18 chr15 8697905 8698254 -76997500 + L1MEc LINE L1 3492 3811 -2404 2799 209 75 26 chr15 8698291 8698366 -76997388 + L1MB4 LINE L1 4540 4610 -1536 2448 80 0 0 chr15 8698366 8698668 -76997086 - AluY SINE Alu -9 302 1 2799 209 75 26 chr15 8698668 8699328 -76996426 + L1MB4 LINE L1 4610 5311 -835 1374 52 29 0 chr15 8699401 8699575 -76996179 - L1MA1 LINE L1 -6 6296 6118 451 232 99 91 chr15 8699595 8699865 -76995889 + MLT1E LTR MaLR 41 312 -255 459 40 100 24 chr15 8700549 8700801 -76994953 + (TA)n Simple_repeat Simple_repeat 1 271 0 * 476 91 57 34 chr15 8700765 8700940 -76994814 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 231 68 54 40 chr15 8700979 8701053 -76994701 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 283 194 0 42 chr15 8701058 8701130 -76994624 + (TA)n Simple_repeat Simple_repeat 2 70 0 306 0 0 0 chr15 8702065 8702099 -76993655 + (CA)n Simple_repeat Simple_repeat 1 34 0 206 279 98 74 chr15 8702315 8702437 -76993317 - MER5A DNA MER1_type 0 189 65 821 156 0 0 chr15 8703379 8703507 -76992247 - AluJb SINE Alu -13 299 172 461 152 0 0 chr15 8703507 8703573 -76992181 - AluJ/FLAM SINE Alu -244 68 3 2851 204 63 26 chr15 8706049 8706774 -76988980 + L1MB4 LINE L1 5428 6179 -1 1877 142 3 65 chr15 8709499 8709822 -76985932 + AluJb SINE Alu 1 303 -9 1583 190 36 18 chr15 8710288 8710619 -76985135 + MER58B DNA MER1_type 5 341 0 2426 150 17 74 chr15 8710677 8710889 -76984865 + Tigger2a DNA MER2_type 1 223 -2485 2280 118 7 0 chr15 8710889 8711195 -76984559 - AluSx SINE Alu -4 308 1 2431 71 10 0 chr15 8711203 8711500 -76984254 - AluSp SINE Alu -8 305 6 2426 150 17 74 chr15 8711500 8711738 -76984016 + Tigger2a DNA MER2_type 230 434 0 222 118 0 0 chr15 8712726 8712760 -76982994 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 304 279 162 35 chr15 8713191 8713567 -76982187 + L2 LINE L2 2187 2610 -704 382 330 118 9 chr15 8713567 8713916 -76981838 + L2 LINE L2 2884 3270 -2 414 239 157 0 chr15 8714199 8714333 -76981421 - MIR SINE MIR 0 262 108 4558 93 27 37 chr15 8714866 8714996 -76980758 - L1MA5 LINE L1 -2 6298 6168 710 225 0 0 chr15 8714996 8715116 -76980638 - FLAM_A SINE Alu -13 120 1 4558 93 27 37 chr15 8715116 8715694 -76980060 - L1MA5 LINE L1 -132 6168 5597 1998 125 30 13 chr15 8715938 8716241 -76979513 + AluJb SINE Alu 1 308 -4 2303 138 12 0 chr15 8717224 8717558 -76978196 - MER1B DNA MER1_type 0 339 2 1038 154 109 25 chr15 8717718 8717919 -76977835 - MER20 DNA MER1_type 0 219 2 472 219 18 0 chr15 8717953 8718067 -76977687 + ERVL LTR ERVL 2291 2406 -3358 2392 98 0 0 chr15 8718524 8718821 -76976933 - AluSg SINE Alu -13 297 1 21 36 0 0 chr15 8719998 8720026 -76975728 + AT_rich Low_complexity Low_complexity 1 28 0 543 338 113 5 chr15 8720525 8720942 -76974812 - L2 LINE L2 -1 3312 2851 2343 77 18 0 chr15 8721753 8722039 -76973715 - AluSp SINE Alu -22 291 1 2402 96 0 0 chr15 8723054 8723367 -76972387 - AluSq SINE Alu 0 313 1 916 170 0 30 chr15 8723369 8723534 -76972220 + AluJo/FRAM SINE Alu 148 307 -5 796 202 91 29 chr15 8727214 8727359 -76968395 + MER63 DNA MER1_type 838 1001 -60 2538 75 0 0 chr15 8727359 8727667 -76968087 - AluY SINE Alu -3 308 1 796 202 91 29 chr15 8727667 8727729 -76968025 + MER63 DNA MER1_type 1001 1058 -3 196 398 8 8 chr15 8727737 8727860 -76967894 + L2 LINE L2 3191 3313 0 584 235 121 95 chr15 8727900 8728312 -76967442 - L2 LINE L2 -5 3308 2886 934 225 6 0 chr15 8728360 8728542 -76967212 - MER58A DNA MER1_type 0 224 42 345 222 159 16 chr15 8728577 8728703 -76967051 - L2 LINE L2 -504 2810 2667 2350 85 3 0 chr15 8728709 8729002 -76966752 + AluY SINE Alu 1 294 -17 1729 215 80 5 chr15 8729002 8729425 -76966329 + L1MB5 LINE L1 5598 6052 -122 2144 120 10 0 chr15 8729906 8730198 -76965556 + AluSx SINE Alu 2 296 -16 483 208 88 0 chr15 8731180 8731305 -76964449 + L1MC3 LINE L1 5195 5330 -816 1802 206 57 4 chr15 8731308 8731968 -76963786 + L1MD2 LINE L1 4849 5545 -743 949 146 11 22 chr15 8731991 8732169 -76963585 + L1MD1 LINE L1 6062 6237 -5 2478 185 40 57 chr15 8732171 8732219 -76963535 + L1MC3 LINE L1 5319 5366 -2419 2446 62 0 10 chr15 8732219 8732528 -76963226 + AluY SINE Alu 1 306 -5 2478 185 40 57 chr15 8732528 8733129 -76962625 + L1MC3 LINE L1 5366 5957 -1828 576 154 31 15 chr15 8733282 8733412 -76962342 - AluSp SINE Alu -180 133 2 552 152 18 9 chr15 8733440 8733552 -76962202 + AluJb SINE Alu 2 114 -198 1628 158 0 45 chr15 8733554 8733864 -76961890 - AluSp SINE Alu -17 296 1 885 98 30 0 chr15 8733871 8734003 -76961751 - AluSp SINE Alu -177 136 1 928 196 11 0 chr15 8734033 8734222 -76961532 + AluJb SINE Alu 118 308 -4 1462 98 0 0 chr15 8735373 8735557 -76960197 + AluSx SINE Alu 2 185 -127 1868 234 67 38 chr15 8735680 8735722 -76960032 + L1MD2 LINE L1 5551 5590 -769 180 0 0 0 chr15 8735722 8735742 -76960012 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1868 234 67 38 chr15 8735742 8736033 -76959721 + L1MD2 LINE L1 5590 5912 -447 2211 89 0 3 chr15 8736033 8736353 -76959401 + AluSc SINE Alu 1 319 0 1868 234 67 38 chr15 8736353 8736599 -76959155 + L1MD2 LINE L1 5912 6149 -210 462 173 0 0 chr15 8736802 8736881 -76958873 - MER2 DNA MER2_type -135 210 132 1604 159 5 66 chr15 8736881 8737304 -76958450 - MER1B DNA MER1_type 0 339 3 706 182 8 0 chr15 8737311 8737432 -76958322 - MER2 DNA MER2_type -222 123 2 359 203 8 73 chr15 8737433 8737556 -76958198 + L1MD3 LINE L1 7868 7982 -13 2588 58 3 0 chr15 8737556 8737864 -76957890 + AluY SINE Alu 1 309 -2 1746 146 182 17 chr15 8738891 8739253 -76956501 + MSTB LTR MaLR 5 426 0 2464 60 0 0 chr15 8739652 8739969 -76955785 + AluY SINE Alu 1 317 0 1903 289 166 39 chr15 8740596 8741998 -76953756 + L2 LINE L2 285 1864 -1450 1808 225 3 11 chr15 8742054 8742414 -76953340 + MLT1A1 LTR MaLR 1 357 -8 2841 187 8 14 chr15 8742414 8742927 -76952827 + MLT1A1-int LTR MaLR 3 512 -1223 2203 109 10 3 chr15 8742949 8743252 -76952502 + AluSx SINE Alu 1 305 -7 1012 191 109 18 chr15 8743255 8743517 -76952237 - MLT-int LTR MaLR -155 1496 1222 973 235 19 103 chr15 8743640 8743959 -76951795 - MLT-int LTR MaLR -945 790 499 * 2523 176 17 38 chr15 8743951 8744485 -76951269 + L1MA2 LINE L1 3938 4460 -1686 5185 126 18 119 chr15 8744485 8746025 -76949729 - pTR5 LTR ERV1 0 2606 1524 1292 150 20 4 chr15 8746025 8746271 -76949483 + L1MA2 LINE L1 4457 4706 -1440 5245 146 20 12 chr15 8747694 8748869 -76946885 + L1MA2 LINE L1 4696 5891 -413 1780 153 60 38 chr15 8748869 8749234 -76946520 + THE1C LTR MaLR 1 373 -2 5245 146 20 12 chr15 8749234 8749420 -76946334 + L1MA2 LINE L1 5891 6074 -230 22 0 0 0 chr15 8749501 8749523 -76946231 + AT_rich Low_complexity Low_complexity 1 22 0 702 310 150 13 chr15 8749595 8750056 -76945698 + L2 LINE L2 2203 2726 -588 422 183 17 52 chr15 8750126 8750241 -76945513 + MER3 DNA MER1_type 97 207 -2 788 203 0 0 chr15 8750387 8750525 -76945229 + MLT1A1 LTR MaLR 228 365 0 230 214 0 0 chr15 8750527 8750569 -76945185 - L1MEc LINE L1 -6314 82 41 1217 170 44 22 chr15 8750869 8751098 -76944656 - MLT1A1 LTR MaLR -129 236 3 2682 281 81 37 chr15 8751099 8751174 -76944580 + L1MEc LINE L1 79 149 -6247 1439 199 42 72 chr15 8751174 8751576 -76944178 - MLT1B LTR MaLR 0 390 1 2682 281 81 37 chr15 8751576 8751875 -76943879 + L1MEc LINE L1 149 434 -5962 2459 206 63 34 chr15 8751875 8752459 -76943295 - MER77 LTR ERV1 -4 601 1 2682 281 81 37 chr15 8752459 8752740 -76943014 + L1MEc LINE L1 434 701 -5695 4809 164 44 1 chr15 8752740 8754099 -76941655 + L1PA16 LINE L1 4766 6158 -8 2682 281 81 37 chr15 8754099 8754113 -76941641 + L1MEc LINE L1 701 713 -5683 1423 199 95 9 chr15 8754113 8754449 -76941305 + MLT1A1 LTR MaLR 1 365 0 2682 281 81 37 chr15 8754449 8754864 -76940890 + L1MEc LINE L1 713 1239 -5157 2411 90 0 3 chr15 8754864 8755176 -76940578 + AluY SINE Alu 1 311 0 2682 281 81 37 chr15 8755176 8755452 -76940302 + L1MEc LINE L1 1239 1502 -4894 257 132 0 0 chr15 8755551 8755589 -76940165 + Alu SINE Alu 5 42 -260 1427 233 25 6 chr15 8755751 8756077 -76939677 - HERVL74 LTR ERVL -3894 1791 1460 1371 192 92 3 chr15 8756119 8756411 -76939343 - HERVL74 LTR ERVL -4299 1386 1069 201 74 0 0 chr15 8756478 8756505 -76939249 + (T)n Simple_repeat Simple_repeat 1 27 0 44447 46 5 1 chr15 8756539 8762670 -76933084 + L1PA4 LINE L1 2 6155 0 1439 247 126 14 chr15 8762688 8763198 -76932556 - L1MEc LINE L1 -5646 750 184 1534 88 92 11 chr15 8763217 8763478 -76932276 - L1MA3 LINE L1 0 6305 6024 227 250 0 0 chr15 8763489 8763545 -76932209 - L1MEc LINE L1 -6206 190 135 362 16 81 0 chr15 8763551 8763613 -76932141 + (CATTT)n Simple_repeat Simple_repeat 1 67 0 405 127 0 0 chr15 8763613 8763668 -76932086 - AluJ/FRAM SINE Alu -22 280 226 506 24 73 0 chr15 8763668 8763750 -76932004 + (CATTT)n Simple_repeat Simple_repeat 1 88 0 377 146 0 0 chr15 8763752 8763807 -76931947 - AluJ/FRAM SINE Alu -22 280 226 518 15 30 0 chr15 8763807 8763873 -76931881 + (CATTT)n Simple_repeat Simple_repeat 1 68 0 405 127 0 0 chr15 8763875 8763930 -76931824 - AluJ/FRAM SINE Alu -22 280 226 316 21 62 0 chr15 8763930 8763978 -76931776 + (CATTT)n Simple_repeat Simple_repeat 1 51 0 369 164 0 0 chr15 8763982 8764037 -76931717 - AluJ/FRAM SINE Alu -22 280 226 269 26 26 0 chr15 8764044 8764082 -76931672 + (CATTT)n Simple_repeat Simple_repeat 5 43 0 362 151 0 0 chr15 8764098 8764151 -76931603 - AluJ/FRAM SINE Alu -24 278 226 306 19 94 0 chr15 8764151 8764204 -76931550 + (CATTT)n Simple_repeat Simple_repeat 1 58 0 392 143 0 0 chr15 8764206 8764262 -76931492 - AluJ/FRAM SINE Alu -22 280 225 379 26 117 0 chr15 8764262 8764339 -76931415 + (CATTT)n Simple_repeat Simple_repeat 2 87 0 365 191 0 0 chr15 8764339 8764402 -76931352 - AluJ/FRAM SINE Alu -14 288 226 331 0 82 0 chr15 8764402 8764451 -76931303 + (CATTT)n Simple_repeat Simple_repeat 1 53 0 392 143 0 0 chr15 8764453 8764509 -76931245 - AluJ/FRAM SINE Alu -22 280 225 357 18 70 0 chr15 8764515 8764572 -76931182 + (CATTT)n Simple_repeat Simple_repeat 5 65 0 355 233 0 0 chr15 8764576 8764649 -76931105 - AluJ/FRAM SINE Alu -4 298 226 202 0 91 0 chr15 8764649 8764682 -76931072 + (CATTT)n Simple_repeat Simple_repeat 1 36 0 369 164 0 0 chr15 8764686 8764741 -76931013 - AluJ/FRAM SINE Alu -22 280 226 327 0 94 0 chr15 8764741 8764794 -76930960 + (CATTT)n Simple_repeat Simple_repeat 1 58 0 376 177 0 18 chr15 8764810 8764863 -76930891 - AluJ/FRAM SINE Alu -24 278 257 306 19 94 0 chr15 8764863 8764916 -76930838 + (CATTT)n Simple_repeat Simple_repeat 1 58 0 376 177 0 18 chr15 8764916 8764948 -76930806 - AluJ/FRAM SINE Alu -45 257 226 343 93 0 0 chr15 8764926 8764969 -76930785 - Alu SINE Alu -34 267 225 * 215 0 67 0 chr15 8764970 8765000 -76930754 + (CATTT)n Simple_repeat Simple_repeat 2 33 0 405 127 0 0 chr15 8765002 8765057 -76930697 - AluJ/FRAM SINE Alu -22 280 226 494 12 96 0 chr15 8765058 8765141 -76930613 + (CATTT)n Simple_repeat Simple_repeat 2 92 0 406 140 0 0 chr15 8765142 8765199 -76930555 - AluJ/FRAM SINE Alu -31 281 225 413 208 0 0 chr15 8765232 8765309 -76930445 - AluJ/FRAM SINE Alu 0 302 226 381 32 65 0 chr15 8765309 8765371 -76930383 + (CATTT)n Simple_repeat Simple_repeat 1 66 0 369 164 0 0 chr15 8765375 8765430 -76930324 - AluJ/FRAM SINE Alu -22 280 226 325 20 61 0 chr15 8765431 8765480 -76930274 + (CATTT)n Simple_repeat Simple_repeat 2 53 0 355 130 0 19 chr15 8765496 8765550 -76930204 - AluJ/FRAM SINE Alu -24 278 226 232 25 75 0 chr15 8765550 8765590 -76930164 + (CATTT)n Simple_repeat Simple_repeat 1 43 0 355 164 0 0 chr15 8765592 8765647 -76930107 - AluJ/FRAM SINE Alu -22 280 226 282 0 104 0 chr15 8765647 8765695 -76930059 + (CATTT)n Simple_repeat Simple_repeat 1 53 0 401 125 0 0 chr15 8765697 8765753 -76930001 - AluJ/FRAM SINE Alu -22 280 225 246 43 85 0 chr15 8765759 8765806 -76929948 + (CATTT)n Simple_repeat Simple_repeat 5 55 0 369 206 27 0 chr15 8765810 8765883 -76929871 - AluJ/FRAM SINE Alu -2 300 226 273 0 106 0 chr15 8765883 8765930 -76929824 + (CATTT)n Simple_repeat Simple_repeat 1 52 0 360 167 0 0 chr15 8765930 8765984 -76929770 - AluJ/FRAM SINE Alu -23 279 226 196 0 118 0 chr15 8765984 8766018 -76929736 + (CATTT)n Simple_repeat Simple_repeat 1 38 0 385 132 0 0 chr15 8766034 8766087 -76929667 - AluJ/FRAM SINE Alu -24 278 226 474 14 57 0 chr15 8766087 8766157 -76929597 + (CATTT)n Simple_repeat Simple_repeat 1 74 0 394 127 0 0 chr15 8766166 8766221 -76929533 - AluJ/FRAM SINE Alu -22 280 226 232 0 105 0 chr15 8766222 8766260 -76929494 + (CATTT)n Simple_repeat Simple_repeat 2 43 0 405 127 0 0 chr15 8766262 8766317 -76929437 - AluJ/FRAM SINE Alu -22 280 226 418 16 66 0 chr15 8766317 8766378 -76929376 + (CATTT)n Simple_repeat Simple_repeat 1 65 0 1442 160 125 12 chr15 8766378 8766634 -76929120 - AluJo SINE Alu -17 285 1 892 205 144 5 chr15 8768267 8768462 -76927292 + MER58A DNA MER1_type 1 222 -2 11292 121 29 16 chr15 8768979 8770430 -76925324 + Tigger1 DNA MER2_type 1 1480 -938 1551 70 10 5 chr15 8770430 8770630 -76925124 + AluY SINE Alu 110 310 -1 11292 121 29 16 chr15 8770630 8770918 -76924836 + Tigger1 DNA MER2_type 1480 1763 -655 668 174 68 0 chr15 8770911 8771043 -76924711 + Tigger1 DNA MER2_type 2277 2417 -1 * 799 220 154 76 chr15 8771049 8771458 -76924296 + MLT1F1 LTR MaLR 69 509 -58 2385 81 0 44 chr15 8771645 8771965 -76923789 + AluSg SINE Alu 1 306 -4 2188 107 30 0 chr15 8772396 8772695 -76923059 - AluSx SINE Alu -4 308 1 2377 79 0 26 chr15 8772823 8773126 -76922628 + AluSq SINE Alu 1 295 -18 2049 62 0 0 chr15 8774004 8774245 -76921509 - AluSg SINE Alu -69 241 1 2224 102 3 0 chr15 8775582 8775875 -76919879 - AluY SINE Alu -17 294 1 295 204 0 0 chr15 8777688 8777742 -76918012 + MER58 DNA MER1_type 171 224 -117 207 305 0 0 chr15 8779053 8779112 -76916642 + GA-rich Low_complexity Low_complexity 1 59 0 510 291 32 77 chr15 8779136 8779449 -76916305 - L2 LINE L2 -585 2729 2431 1453 184 42 4 chr15 8779523 8779784 -76915970 + AluJb SINE Alu 1 271 -41 1764 154 3 10 chr15 8779906 8780199 -76915555 + AluJo SINE Alu 1 291 -21 24 32 0 0 chr15 8781805 8781836 -76913918 + AT_rich Low_complexity Low_complexity 1 31 0 1139 136 0 0 chr15 8782069 8782223 -76913531 + FRAM SINE Alu 1 150 -26 949 217 57 62 chr15 8782394 8782782 -76912972 + L1MC5 LINE L1 6876 7237 -724 2312 99 3 3 chr15 8783833 8784136 -76911618 + AluSp SINE Alu 1 303 -10 2133 131 0 3 chr15 8784147 8784445 -76911309 + AluSx SINE Alu 5 301 -11 22 0 0 0 chr15 8784807 8784829 -76910925 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 8785049 8785071 -76910683 + AT_rich Low_complexity Low_complexity 1 22 0 221 214 54 54 chr15 8785350 8785462 -76910292 + MIR SINE MIR 26 137 -125 253 262 16 0 chr15 8785822 8785883 -76909871 - MER46C DNA MER2_type -276 62 1 506 282 124 19 chr15 8786741 8787000 -76908754 - MER46C DNA MER2_type -51 287 2 2457 60 10 3 chr15 8787017 8787318 -76908436 - AluY SINE Alu -8 303 1 2483 199 117 23 chr15 8789208 8790453 -76905301 + L1MD2 LINE L1 4552 5910 -449 188 300 0 0 chr15 8790553 8790613 -76905141 - MIR SINE MIR -144 118 59 3174 220 62 52 chr15 8790706 8792291 -76903463 + L1ME1 LINE L1 4295 5895 -271 2044 147 0 3 chr15 8792291 8792604 -76903150 + AluJb SINE Alu 1 312 0 3174 220 62 52 chr15 8792604 8792874 -76902880 + L1ME1 LINE L1 5895 6161 -5 2370 65 41 0 chr15 8794059 8794353 -76901401 + AluY SINE Alu 1 306 -5 2356 69 0 4 chr15 8795092 8795374 -76900380 + AluY SINE Alu 1 281 -30 190 0 0 0 chr15 8795374 8795395 -76900359 + (TAAA)n Simple_repeat Simple_repeat 2 104 0 180 0 0 0 chr15 8796031 8796051 -76899703 + (GGGAA)n Simple_repeat Simple_repeat 5 24 0 2476 239 40 29 chr15 8796236 8796994 -76898760 - L1ME3A LINE L1 -2 6168 5403 303 303 86 12 chr15 8798949 8799111 -76896643 - L1ME3A LINE L1 -1871 4275 4102 2408 54 0 0 chr15 8799491 8799807 -76895947 + AluY SINE Alu 1 316 0 213 149 21 21 chr15 8800130 8800177 -76895577 - MER5A DNA MER1_type -22 167 121 340 246 146 15 chr15 8800491 8800621 -76895133 - MER103 DNA DNA -12 154 8 899 173 25 27 chr15 8801839 8802026 -76893728 + L1MC3 LINE L1 6196 6357 -2 235 236 307 21 chr15 8802666 8802806 -76892948 - L2 LINE L2 -20 3293 3114 1580 108 95 0 chr15 8803156 8803387 -76892367 - AluSx SINE Alu -11 301 49 7595 92 8 21 chr15 8803387 8804457 -76891297 + MER11C LTR ERVK 1 1057 -14 395 107 0 88 chr15 8804456 8804548 -76891206 - Alu SINE Alu -246 54 1 * 328 299 64 34 chr15 8804575 8804852 -76890902 - L1ME3 LINE L1 -206 5915 5650 305 236 133 33 chr15 8804922 8805154 -76890600 - L1ME3 LINE L1 -769 5395 5255 375 254 124 25 chr15 8805264 8805417 -76890337 + L1MC4a LINE L1 5722 5901 -1907 1457 181 3 60 chr15 8805417 8805731 -76890023 + AluJb SINE Alu 1 296 -16 375 254 124 25 chr15 8805731 8805778 -76889976 + L1MC4a LINE L1 5901 5942 -1866 858 129 5 118 chr15 8805779 8805965 -76889789 - AluSp SINE Alu -121 192 28 2452 164 38 19 chr15 8805966 8806442 -76889312 + LTR15 LTR ERV1 2 486 -7 264 108 0 0 chr15 8806473 8806510 -76889244 - AluSp SINE Alu -265 37 1 696 219 8 80 chr15 8806539 8806662 -76889092 + AluJb SINE Alu 2 101 -211 1696 176 3 3 chr15 8806662 8806974 -76888780 - AluSp SINE Alu -1 312 1 696 219 8 80 chr15 8806974 8807088 -76888666 + AluJb SINE Alu 101 222 -90 1551 168 6 47 chr15 8807113 8807434 -76888320 - AluSp SINE Alu -5 308 1 590 159 9 9 chr15 8807463 8807576 -76888178 + AluJb SINE Alu 2 114 -198 1578 168 6 50 chr15 8807578 8807899 -76887855 - AluSp SINE Alu -6 307 1 1288 144 9 107 chr15 8807927 8808044 -76887710 + AluJb SINE Alu 1 128 -184 1687 164 0 29 chr15 8808044 8808356 -76887398 - AluSp SINE Alu -10 303 1 1288 144 9 107 chr15 8808356 8808584 -76887170 + AluJb SINE Alu 128 312 0 394 178 40 103 chr15 8809242 8809416 -76886338 + L1MC5 LINE L1 7658 7820 -141 207 69 0 0 chr15 8809757 8809786 -76885968 + (CCCCCA)n Simple_repeat Simple_repeat 6 34 0 943 169 0 18 chr15 8810910 8811076 -76884678 - 7SLRNA srpRNA srpRNA -63 257 95 225 250 102 0 chr15 8811782 8811870 -76883884 - MIR SINE MIR -70 192 96 1921 132 0 45 chr15 8811921 8812231 -76883523 - AluSx SINE Alu -15 297 2 183 200 0 0 chr15 8812758 8812798 -76882956 - MIR SINE MIR -117 145 106 207 0 0 0 chr15 8813127 8813150 -76882604 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 180 235 78 0 chr15 8813285 8813336 -76882418 - MIR SINE MIR -59 149 95 431 233 103 27 chr15 8814358 8814504 -76881250 - MIR SINE MIR -70 192 36 228 307 79 18 chr15 8816121 8816235 -76879519 - L2 LINE L2 -5 3308 3188 246 338 119 0 chr15 8816242 8816393 -76879361 - MIR3 SINE MIR -9 199 31 310 287 73 7 chr15 8817322 8817458 -76878296 - MIR SINE MIR -70 192 48 2411 82 7 7 chr15 8817465 8817771 -76877983 - AluY SINE Alu -5 306 1 312 91 0 0 chr15 8820058 8820102 -76875652 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 2315 107 0 0 chr15 8820449 8820749 -76875005 + AluSx SINE Alu 1 300 -12 532 236 114 7 chr15 8821083 8821113 -76874641 + MER5A DNA MER1_type 2 27 -162 252 0 0 0 chr15 8821113 8821141 -76874613 + (CAG)n Simple_repeat Simple_repeat 2 29 0 532 236 114 7 chr15 8821141 8821250 -76874504 + MER5A DNA MER1_type 27 156 -33 1491 204 4 4 chr15 8821992 8822267 -76873487 + AluJo SINE Alu 1 275 -37 609 173 17 34 chr15 8822380 8822559 -76873195 + GA-rich Low_complexity Low_complexity 2 177 0 461 231 117 41 chr15 8822568 8823034 -76872720 + L1ME LINE L1 5188 5701 -469 2303 84 0 7 chr15 8823212 8823508 -76872246 + AluY SINE Alu 1 294 -17 682 235 84 50 chr15 8824126 8824424 -76871330 - L1MC4a LINE L1 -1799 6009 5702 685 169 0 25 chr15 8824697 8824815 -76870939 + FRAM SINE Alu 56 170 -6 1796 176 0 3 chr15 8824815 8825099 -76870655 + AluJo SINE Alu 1 283 -29 324 0 0 0 chr15 8825099 8825135 -76870619 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 367 125 75 25 chr15 8825243 8825323 -76870431 + L1MB3 LINE L1 6083 6166 -17 746 167 0 53 chr15 8825343 8825493 -76870261 - FLAM_C SINE Alu 0 143 2 314 333 56 20 chr15 8825589 8825784 -76869970 + L1M4 LINE L1 2841 3042 -3104 310 278 183 33 chr15 8826113 8826354 -76869400 + L1M4 LINE L1 4557 4833 -1313 22 0 0 0 chr15 8826442 8826464 -76869290 + AT_rich Low_complexity Low_complexity 1 22 0 2268 99 3 0 chr15 8826893 8827187 -76868567 - AluSg SINE Alu -15 295 1 897 220 62 56 chr15 8827338 8827466 -76868288 - L1MEc LINE L1 -4409 1987 1861 1716 191 0 17 chr15 8827466 8827764 -76867990 + AluJb SINE Alu 1 293 -19 897 220 62 56 chr15 8827764 8827972 -76867782 - L1MEc LINE L1 -4535 1861 1649 2429 156 103 54 chr15 8827972 8828589 -76867165 + pTR5 LTR ERV1 1176 1768 -670 923 145 45 99 chr15 8828589 8828810 -76866944 - LTR15 LTR ERV1 -275 218 10 1161 154 48 92 chr15 8828810 8829082 -76866672 + AluSp SINE Alu 22 281 -32 203 79 26 0 chr15 8829083 8829121 -76866633 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1811 105 47 0 chr15 8829136 8829394 -76866360 + MSTB1 LTR MaLR 163 432 0 2281 107 7 3 chr15 8829425 8829725 -76866029 + AluSx SINE Alu 1 301 -11 360 0 0 0 chr15 8829861 8829901 -76865853 + (TTA)n Simple_repeat Simple_repeat 3 42 0 42368 53 6 19 chr15 8829901 8836111 -76859643 - L1PA4 LINE L1 -18 6137 11 260 284 59 0 chr15 8836126 8836228 -76859526 + L1ME3A LINE L1 6055 6162 -8 1126 222 162 55 chr15 8837098 8837585 -76858169 + MLT1F LTR MaLR 4 542 0 22 0 0 0 chr15 8837617 8837639 -76858115 + AT_rich Low_complexity Low_complexity 1 22 0 1961 245 26 83 chr15 8837639 8838406 -76857348 + L1ME2 LINE L1 5428 6150 -14 222 259 0 0 chr15 8838518 8838572 -76857182 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 269 250 62 0 chr15 8838572 8838668 -76857086 + L1MC4 LINE L1 7924 8025 -17 1863 170 0 0 chr15 8838804 8839093 -76856661 - AluJo SINE Alu -23 289 1 4576 167 36 19 chr15 8839227 8840112 -76855642 - MER54A LTR ERVL 0 901 2 323 284 43 9 chr15 8841120 8841236 -76854518 - MIR3 SINE MIR -33 175 56 235 198 99 12 chr15 8841847 8841928 -76853826 - L1MA10 LINE L1 -4 6330 6243 2536 159 28 35 chr15 8841928 8842386 -76853368 + Tigger1 DNA MER2_type 1 455 -1963 10224 102 46 23 chr15 8842395 8843863 -76851891 + Tigger1 DNA MER2_type 802 2310 -108 1628 163 7 52 chr15 8843863 8844169 -76851585 - AluJb SINE Alu -20 292 1 10224 102 46 23 chr15 8844169 8844277 -76851477 + Tigger1 DNA MER2_type 2310 2414 -4 2033 107 52 0 chr15 8844327 8844617 -76851137 + AluY SINE Alu 1 305 -6 3043 223 25 47 chr15 8844617 8845598 -76850156 - L1ME1 LINE L1 -141 6094 5153 2039 95 82 0 chr15 8845598 8845903 -76849851 + L1PB1 LINE L1 5822 6151 0 3043 223 25 47 chr15 8845903 8846186 -76849568 - L1ME1 LINE L1 -1082 5153 4865 636 184 97 72 chr15 8846212 8846419 -76849335 - L1MA9 LINE L1 -38 6274 6063 * 4422 243 62 21 chr15 8846416 8846480 -76849274 - L1ME1 LINE L1 -1366 4849 4789 1989 126 37 37 chr15 8846480 8846854 -76848900 + THE1C LTR MaLR 1 374 -1 4422 243 62 21 chr15 8846854 8848416 -76847338 - L1ME1 LINE L1 -1426 4789 3157 397 265 41 6 chr15 8848423 8848593 -76847161 - L1ME1 LINE L1 -2987 3228 3053 1270 219 20 68 chr15 8848635 8848705 -76847049 - L1ME1 LINE L1 -5142 1254 1182 757 208 0 8 chr15 8848705 8848835 -76846919 - FLAM_A SINE Alu -4 129 1 1270 219 20 68 chr15 8848835 8849348 -76846406 - L1ME1 LINE L1 -5214 1182 699 1066 235 81 86 chr15 8849352 8849963 -76845791 + LTR19C LTR ERV1 1 779 0 1812 265 60 19 chr15 8849987 8850023 -76845731 - L1ME1 LINE L1 -5715 681 648 1605 204 10 10 chr15 8850023 8850327 -76845427 - AluJo SINE Alu -8 304 1 1812 265 60 19 chr15 8850327 8850912 -76844842 - L1ME1 LINE L1 -5748 648 35 526 260 110 34 chr15 8850965 8851319 -76844435 - L1MC5 LINE L1 -83 7878 7498 346 195 61 12 chr15 8851323 8851405 -76844349 + MER58A DNA MER1_type 5 90 -17 198 167 0 0 chr15 8851954 8851990 -76843764 + CT-rich Low_complexity Low_complexity 1 36 0 2412 107 0 0 chr15 8851991 8852301 -76843453 - AluSg SINE Alu 0 310 1 616 251 84 15 chr15 8853025 8853228 -76842526 + L2 LINE L2 2949 3165 -148 216 319 34 34 chr15 8853278 8853397 -76842357 - L2 LINE L2 -10 3303 3185 3909 161 32 42 chr15 8853697 8854303 -76841451 + LTR39 LTR ERV1 1 599 -184 2191 128 3 0 chr15 8854303 8854609 -76841145 - AluSx SINE Alu -5 307 1 3909 161 32 42 chr15 8854609 8854793 -76840961 + LTR39 LTR ERV1 599 783 0 1044 257 83 48 chr15 8856107 8856686 -76839068 + L1ME1 LINE L1 823 1421 -4988 3609 241 66 22 chr15 8856801 8857117 -76838637 + L1ME1 LINE L1 4180 4481 -1945 234 0 0 0 chr15 8857117 8857143 -76838611 + (CA)n Simple_repeat Simple_repeat 2 27 0 3609 241 66 22 chr15 8857143 8858489 -76837265 + L1ME1 LINE L1 4481 5952 -474 2173 114 6 22 chr15 8858489 8858804 -76836950 + AluSg SINE Alu 1 310 0 3609 241 66 22 chr15 8858804 8859281 -76836473 + L1ME1 LINE L1 5952 6407 -19 365 357 65 18 chr15 8859412 8859639 -76836115 - MIR SINE MIR -14 248 4 370 136 0 30 chr15 8861126 8861192 -76834562 + MLT1A1 LTR MaLR 4 67 -298 930 189 0 0 chr15 8861196 8861365 -76834389 + MLT1A1 LTR MaLR 197 365 0 954 248 18 5 chr15 8861967 8862185 -76833569 + MER58A DNA MER1_type 2 222 -2 2347 87 0 19 chr15 8862975 8863284 -76832470 - AluY SINE Alu -8 303 1 573 261 172 0 chr15 8863671 8863874 -76831880 + MIR SINE MIR 21 258 -4 1929 117 0 53 chr15 8864365 8864712 -76831042 + AluSq SINE Alu 1 331 0 190 326 95 0 chr15 8864941 8865036 -76830718 + L2 LINE L2 3175 3278 -35 788 228 14 9 chr15 8865036 8865247 -76830507 + MER96B DNA MER1_type? 1 212 -205 275 317 145 21 chr15 8865499 8865644 -76830110 + MIR SINE MIR 22 184 -78 2774 234 76 43 chr15 8867096 8868404 -76827350 - L1MC5 LINE L1 -49 7912 6551 311 328 40 27 chr15 8868537 8868833 -76826921 - L1 LINE L1 -1818 4328 4029 204 40 0 0 chr15 8868856 8868881 -76826873 + (CA)n Simple_repeat Simple_repeat 2 26 0 2790 77 26 3 chr15 8868883 8869274 -76826480 - L1PA10 LINE L1 -1 6167 5768 12546 194 48 9 chr15 8869280 8874707 -76821047 - L1PB1 LINE L1 -1 6866 1093 3297 221 62 9 chr15 8874711 8875671 -76820083 - L1PB1 LINE L1 -5818 1045 36 3817 100 35 7 chr15 8875681 8876236 -76819518 - L1P4 LINE L1 -387 5781 5188 2611 45 0 13 chr15 8876236 8876545 -76819209 + AluY SINE Alu 1 305 -6 3817 100 35 7 chr15 8876545 8877027 -76818727 - L1P4 LINE L1 -980 5188 4721 424 298 36 42 chr15 8877099 8877267 -76818487 - L1M4 LINE L1 -2251 3895 3729 1745 136 4 0 chr15 8877292 8877565 -76818189 - L1PA15 LINE L1 0 6165 5892 260 330 36 21 chr15 8877595 8877928 -76817826 - L1M4 LINE L1 -2439 3707 3370 347 195 49 0 chr15 8878572 8878654 -76817100 - Tigger5 DNA MER2_type 0 2323 2238 344 164 14 14 chr15 8878704 8878777 -76816977 - Tigger5 DNA MER2_type 0 2323 2251 2139 113 7 0 chr15 8880322 8880613 -76815141 + AluSq SINE Alu 1 293 -20 653 256 27 70 chr15 8880717 8881348 -76814406 + L1MC4a LINE L1 6683 7214 -636 395 207 96 114 chr15 8881767 8882144 -76813610 + L1MC5 LINE L1 7560 7929 -32 314 289 82 15 chr15 8882703 8882838 -76812916 + L1MB4 LINE L1 3638 3781 -2365 297 289 74 13 chr15 8882908 8883057 -76812697 + MLT1J LTR MaLR 344 501 -10 245 219 16 0 chr15 8883064 8883128 -76812626 + L1MB4 LINE L1 3856 3920 -2226 324 168 168 32 chr15 8883530 8883685 -76812069 + L1MB4 LINE L1 4524 4699 -1447 438 172 0 33 chr15 8884472 8884594 -76811160 + GA-rich Low_complexity Low_complexity 1 118 0 2120 109 10 0 chr15 8884878 8885171 -76810583 + AluSx SINE Alu 1 296 -16 927 154 80 28 chr15 8885348 8885804 -76809950 + L1MB4 LINE L1 5190 5863 -317 3238 136 0 6 chr15 8885804 8886304 -76809450 + LOR1a LTR ERV1 1 497 0 1075 179 39 8 chr15 8886304 8886538 -76809216 + L1MB4 LINE L1 5922 6162 -18 255 276 27 70 chr15 8886689 8886874 -76808880 + L1ME LINE L1 5539 5715 -406 22 0 0 0 chr15 8887140 8887162 -76808592 + AT_rich Low_complexity Low_complexity 1 22 0 450 267 73 42 chr15 8888124 8888289 -76807465 - L2 LINE L2 0 3313 3144 712 156 32 219 chr15 8888756 8888902 -76806852 + L1MD3 LINE L1 7564 7609 -386 2154 126 0 0 chr15 8888902 8889203 -76806551 + AluSg SINE Alu 1 301 -9 712 156 32 219 chr15 8889203 8889403 -76806351 + L1MD3 LINE L1 7609 7845 -150 327 236 22 0 chr15 8889433 8889522 -76806232 - U8 snRNA snRNA -8 128 38 312 214 0 14 chr15 8890685 8890755 -76804999 - MER8 DNA MER2_type -170 69 1 312 247 137 71 chr15 8891195 8891420 -76804334 - MIR SINE MIR -28 234 3 829 143 0 15 chr15 8891738 8891871 -76803883 + FLAM_C SINE Alu 2 132 -1 23 33 0 0 chr15 8891938 8891968 -76803786 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr15 8892088 8892112 -76803642 + AT_rich Low_complexity Low_complexity 1 24 0 38 22 0 0 chr15 8892172 8892217 -76803537 + AT_rich Low_complexity Low_complexity 1 45 0 2123 97 4 0 chr15 8892846 8893146 -76802608 - AluSq SINE Alu 0 303 3 833 68 25 17 chr15 8893160 8893278 -76802476 - AluY SINE Alu -15 296 178 2146 133 3 0 chr15 8894210 8894511 -76801243 + AluSx SINE Alu 1 302 -10 2198 120 0 13 chr15 8894586 8894887 -76800867 + AluSq SINE Alu 1 297 -16 25 0 0 0 chr15 8895086 8895111 -76800643 + AT_rich Low_complexity Low_complexity 1 25 0 258 280 0 13 chr15 8895702 8895777 -76799977 + L3 LINE CR1 916 989 -588 378 0 0 0 chr15 8896212 8896254 -76799500 + (CA)n Simple_repeat Simple_repeat 2 43 0 22 88 0 0 chr15 8897329 8897386 -76798368 + AT_rich Low_complexity Low_complexity 1 57 0 1917 164 0 3 chr15 8898105 8898409 -76797345 + AluSx SINE Alu 1 303 -9 196 305 171 12 chr15 8898588 8898752 -76797002 + L2 LINE L2 2598 2787 -527 729 231 0 8 chr15 8900629 8900763 -76794991 - FLAM_A SINE Alu 0 133 1 887 265 106 19 chr15 8901392 8901807 -76793947 + L2 LINE L2 1742 2192 -1122 1829 133 24 7 chr15 8902203 8902497 -76793257 - AluJb SINE Alu -7 305 7 666 189 8 16 chr15 8902597 8902719 -76793035 - FLAM_C SINE Alu -12 121 1 2138 129 0 13 chr15 8902775 8903085 -76792669 + AluSx SINE Alu 1 306 -6 237 333 0 24 chr15 8903309 8903393 -76792361 + L3b LINE CR1 1272 1353 -230 200 317 24 81 chr15 8903474 8903597 -76792157 - L2 LINE L2 -2 3270 3155 2014 141 3 0 chr15 8903598 8903889 -76791865 + AluSx SINE Alu 1 292 -20 284 104 0 21 chr15 8904431 8904479 -76791275 - MADE1 DNA Mariner 0 80 34 493 286 104 10 chr15 8905136 8905328 -76790426 - L2 LINE L2 0 3313 3104 460 171 13 0 chr15 8905379 8905455 -76790299 - MER33 DNA MER1_type -246 78 2 2200 99 0 3 chr15 8907665 8907979 -76787775 + AluY SINE Alu 1 313 0 1196 174 15 0 chr15 8908234 8908429 -76787325 - AluJo SINE Alu -111 201 4 231 303 91 24 chr15 8910836 8911001 -76784753 - MIR SINE MIR -11 251 76 22 0 0 0 chr15 8911350 8911372 -76784382 + AT_rich Low_complexity Low_complexity 1 22 0 673 216 40 0 chr15 8911633 8911781 -76783973 + MER5A DNA MER1_type 1 154 -35 2621 53 0 0 chr15 8912291 8912594 -76783160 - AluY SINE Alu -8 303 1 222 258 0 0 chr15 8913737 8913799 -76781955 + CT-rich Low_complexity Low_complexity 1 62 0 2553 211 42 24 chr15 8913977 8914604 -76781150 + L1MC4a LINE L1 7159 7796 -12 * 7022 215 69 12 chr15 8914594 8916250 -76779504 + L1MD1 LINE L1 3196 5049 -1193 216 0 0 0 chr15 8916250 8916274 -76779480 + (GAAA)n Simple_repeat Simple_repeat 3 26 0 7022 215 69 12 chr15 8916274 8917184 -76778570 + L1MD1 LINE L1 5049 5906 -336 5401 172 7 0 chr15 8917285 8918239 -76777515 - L1P LINE L1 -850 5296 4336 434 263 249 37 chr15 8918644 8918941 -76776813 - L2 LINE L2 -1 3271 2912 213 263 40 0 chr15 8919091 8919167 -76776587 - MIR SINE MIR -26 236 158 1418 180 11 27 chr15 8919345 8919606 -76776148 - AluSx SINE Alu -53 259 3 1678 263 93 21 chr15 8919675 8920436 -76775318 - L1MEc LINE L1 -3116 3099 2284 1120 117 47 12 chr15 8920439 8920610 -76775144 - AluSg/x SINE Alu -7 303 127 1851 115 29 48 chr15 8920615 8920790 -76774964 - AluSx SINE Alu -1 311 143 2161 99 6 10 chr15 8920790 8921102 -76774652 - AluY SINE Alu 0 311 1 1851 115 29 48 chr15 8921102 8921238 -76774516 - AluSx SINE Alu -169 143 6 1376 259 67 117 chr15 8921242 8921455 -76774299 - L1MEc LINE L1 -4070 2326 2104 624 98 87 0 chr15 8921455 8921547 -76774207 - HY3 scRNA scRNA -1 100 1 1376 259 67 117 chr15 8921547 8921746 -76774008 - L1MEc LINE L1 -4292 2104 1897 1841 148 16 16 chr15 8921746 8922051 -76773703 + AluSx SINE Alu 5 309 -3 1376 259 67 117 chr15 8922051 8922968 -76772786 - L1MEc LINE L1 -4499 1897 1062 * 2338 212 95 95 chr15 8922966 8923287 -76772467 - L1MD2 LINE L1 -8 6234 5915 2210 128 77 8 chr15 8923287 8923638 -76772116 + THE1C LTR MaLR 1 375 0 2338 212 95 95 chr15 8923638 8924515 -76771239 - L1MD2 LINE L1 -327 5915 5049 311 275 225 14 chr15 8925151 8925289 -76770465 - L1MEc LINE L1 -5901 304 138 373 293 123 98 chr15 8925301 8925447 -76770307 - L1MEd LINE L1 -5556 563 422 2083 137 0 3 chr15 8925447 8925753 -76770001 + AluSg1 SINE Alu 1 305 -4 373 293 123 98 chr15 8925753 8926094 -76769660 - L1MEd LINE L1 -5697 422 64 2155 138 0 0 chr15 8926094 8926399 -76769355 - AluSx SINE Alu -3 309 5 1691 164 34 17 chr15 8927102 8927395 -76768359 + L1PB3 LINE L1 5855 6152 -2 482 198 22 11 chr15 8927570 8927661 -76768093 + AluJo SINE Alu 2 93 -219 182 148 0 0 chr15 8927663 8927690 -76768064 + MIR SINE MIR 222 248 -14 966 184 58 34 chr15 8927722 8927929 -76767825 + AluJo SINE Alu 82 293 -19 265 264 61 56 chr15 8928111 8928685 -76767069 + L1MC4 LINE L1 3718 7630 -412 535 283 126 12 chr15 8928723 8928970 -76766784 + L1ME3A LINE L1 5484 5758 -404 413 213 71 8 chr15 8928972 8929100 -76766654 + L1ME3A LINE L1 5791 5929 -241 597 298 105 39 chr15 8929288 8929651 -76766103 + MLT1J2 LTR MaLR 62 448 -2 2340 117 24 35 chr15 8929692 8930067 -76765687 + THE1C LTR MaLR 3 373 -2 11691 99 14 32 chr15 8930069 8931679 -76764075 + THE1C-int LTR MaLR 1 1580 0 2141 101 44 83 chr15 8931682 8932069 -76763685 + THE1C LTR MaLR 4 375 0 297 265 59 82 chr15 8932246 8932465 -76763289 + L1MC/D LINE L1 5332 5545 -2263 241 248 165 15 chr15 8932619 8932752 -76763002 + L1MC/D LINE L1 5668 5820 -1988 313 290 21 14 chr15 8933312 8933457 -76762297 + (TCTA)n Simple_repeat Simple_repeat 2 147 0 462 136 0 0 chr15 8933595 8933676 -76762078 + (TCCA)n Simple_repeat Simple_repeat 4 84 0 430 243 5 60 chr15 8933685 8933870 -76761884 + (TCTG)n Simple_repeat Simple_repeat 4 178 0 1670 244 93 14 chr15 8934547 8935052 -76760702 + L1M4 LINE L1 4463 5007 -1139 211 245 6 37 chr15 8935080 8935243 -76760511 + (TG)n Simple_repeat Simple_repeat 1 158 0 250 254 209 15 chr15 8935831 8935965 -76759789 + MIR SINE MIR 89 248 -14 268 146 0 0 chr15 8935972 8936020 -76759734 + L1MA3 LINE L1 6258 6305 0 1626 228 97 43 chr15 8936723 8937261 -76758493 - MLT1F1 LTR MaLR 0 567 1 419 216 69 99 chr15 8937575 8937717 -76758037 + LTR37B LTR ERV1 185 319 -149 2267 59 3 53 chr15 8937717 8938020 -76757734 + AluY SINE Alu 1 288 -23 419 216 69 99 chr15 8938020 8938109 -76757645 + LTR37B LTR ERV1 319 409 -59 225 310 16 93 chr15 8939924 8940053 -76755701 - MIR SINE MIR -130 132 14 809 286 102 52 chr15 8940173 8940297 -76755457 + L1MC4 LINE L1 7129 7245 -797 2371 84 0 7 chr15 8940297 8940596 -76755158 + AluSc SINE Alu 1 297 -12 809 286 102 52 chr15 8940596 8941248 -76754506 + L1MC4 LINE L1 7245 8042 0 47 44 0 0 chr15 8941924 8941992 -76753762 + AT_rich Low_complexity Low_complexity 1 68 0 21 71 0 0 chr15 8942383 8942425 -76753329 + AT_rich Low_complexity Low_complexity 1 42 0 2652 204 25 57 chr15 8942753 8943459 -76752295 + L1MC4a LINE L1 4617 5300 -846 * 5141 144 36 4 chr15 8943451 8945021 -76750733 + L1MA4 LINE L1 4487 6110 -190 693 143 34 0 chr15 8945625 8945744 -76750010 + L1MD1 LINE L1 6118 6240 -2 297 250 26 0 chr15 8946409 8946485 -76749269 + MER5A DNA MER1_type 29 106 -83 219 226 19 0 chr15 8946544 8946597 -76749157 + MIR SINE MIR 133 186 -76 636 227 129 12 chr15 8947281 8947444 -76748310 + MER58A DNA MER1_type 42 223 -1 301 373 35 35 chr15 8947453 8947654 -76748100 - L3 LINE CR1 -920 657 457 457 302 38 19 chr15 8947662 8947821 -76747933 - MIR3 SINE MIR -15 193 32 381 285 106 31 chr15 8949647 8949903 -76745851 + L1MC4a LINE L1 5452 5726 -2082 231 146 0 0 chr15 8951251 8951292 -76744462 + LTR66 LTR ERVL 399 439 -171 301 245 39 65 chr15 8951322 8951477 -76744277 + L1MC4a LINE L1 5847 5997 -1811 313 277 76 0 chr15 8951580 8951699 -76744055 + L1ME4a LINE L1 5991 6118 -3 629 293 22 0 chr15 8952059 8952240 -76743514 - L1 LINE L1 -3452 2694 2510 1252 272 92 52 chr15 8953647 8953920 -76741834 + L1ME3 LINE L1 4855 5116 -1050 1943 166 0 0 chr15 8953920 8954222 -76741532 + AluSx SINE Alu 2 303 -9 1252 272 92 52 chr15 8954222 8955179 -76740575 + L1ME3 LINE L1 5116 6166 0 249 274 106 58 chr15 8955378 8955432 -76740322 + L2 LINE L2 2657 2707 -565 2104 110 17 0 chr15 8955432 8955731 -76740023 + AluSx SINE Alu 1 304 -8 249 274 106 58 chr15 8955731 8956078 -76739676 + L2 LINE L2 2707 3077 -195 29 47 0 0 chr15 8956605 8956648 -76739106 + AT_rich Low_complexity Low_complexity 1 43 0 35 24 0 0 chr15 8956705 8956747 -76739007 + AT_rich Low_complexity Low_complexity 1 42 0 186 143 79 16 chr15 8956754 8956880 -76738874 + (TA)n Simple_repeat Simple_repeat 1 134 0 1948 232 64 76 chr15 8957517 8957824 -76737930 - L1MC4 LINE L1 -1 7807 7498 6267 45 0 0 chr15 8957824 8958527 -76737227 - L1PA7 LINE L1 -11 6143 5441 1948 232 64 76 chr15 8958527 8959127 -76736627 - L1MC4 LINE L1 -310 7498 6895 851 184 48 0 chr15 8959666 8959813 -76735941 - FRAM SINE Alu -14 162 9 1221 276 75 51 chr15 8959887 8960500 -76735254 + L2 LINE L2 2310 2937 -377 3550 122 48 59 chr15 8960845 8960982 -76734772 + MER7C DNA MER2_type 1 138 -2890 2259 55 21 0 chr15 8960982 8961271 -76734483 - AluY SINE Alu -14 297 3 3550 122 48 59 chr15 8961271 8961742 -76734012 + MER7C DNA MER2_type 138 602 0 274 318 93 0 chr15 8962430 8962537 -76733217 + L2 LINE L2 3145 3261 -11 666 274 74 55 chr15 8964144 8964725 -76731029 - L1MC4 LINE L1 -517 5647 5268 993 275 90 14 chr15 8966147 8966514 -76729240 + MLT1I LTR MaLR 1 395 -14 268 256 58 0 chr15 8966527 8966613 -76729141 + L2 LINE L2 2188 2278 -1036 476 316 54 0 chr15 8966619 8966787 -76728967 + L2 LINE L2 2082 2258 -1056 375 23 0 0 chr15 8966944 8966988 -76728766 + (CA)n Simple_repeat Simple_repeat 2 45 0 180 111 0 0 chr15 8967081 8967108 -76728646 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 884 153 15 0 chr15 8968269 8968400 -76727354 - AluSg/x SINE Alu -46 266 134 1093 103 0 0 chr15 8968400 8968545 -76727209 - AluSc SINE Alu -4 305 161 901 83 0 0 chr15 8968547 8968655 -76727099 - AluSq/x SINE Alu -203 109 2 672 136 0 75 chr15 8969171 8969318 -76726436 + AluSg SINE Alu 2 137 -173 2211 95 0 0 chr15 8969424 8969708 -76726046 + AluY SINE Alu 18 301 -10 1666 155 17 24 chr15 8969845 8970135 -76725619 - AluJb SINE Alu -17 295 8 428 114 143 0 chr15 8970282 8970352 -76725402 - AluJ/FRAM SINE Alu -17 295 216 278 231 0 15 chr15 8970617 8970682 -76725072 - AluSg/x SINE Alu -53 249 186 1262 195 43 14 chr15 8970787 8971325 -76724429 + LTR1B LTR ERV1 233 826 0 180 111 0 0 chr15 8971366 8971393 -76724361 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 261 108 0 0 chr15 8971398 8971435 -76724319 + MLT2D LTR ERVL 378 414 0 873 229 10 5 chr15 8971435 8971640 -76724114 + HERVL-D LTR ERVL 1 206 -5448 1531 187 63 3 chr15 8971710 8971994 -76723760 + HERVL-D LTR ERVL 380 680 -5084 1463 127 17 68 chr15 8971996 8972288 -76723466 - LTR23 LTR ERV1 0 437 161 589 200 82 0 chr15 8972366 8972501 -76723253 - LTR23 LTR ERV1 -291 146 1 1194 167 14 5 chr15 8972526 8972747 -76723007 + HERVL-D LTR ERVL 679 901 -4863 1973 254 43 42 chr15 8972885 8973096 -76722658 - L1M4 LINE L1 -2465 3681 3472 2413 79 0 3 chr15 8973096 8973400 -76722354 + AluY SINE Alu 1 303 -8 1973 254 43 42 chr15 8973400 8973994 -76721760 - L1M4 LINE L1 -2674 3472 2875 1813 253 33 33 chr15 8973984 8974590 -76721164 - L1MCb LINE L1 -4882 1163 558 * 448 274 111 66 chr15 8974673 8974899 -76720855 - L1MCb LINE L1 -5481 564 329 243 255 43 78 chr15 8974913 8975054 -76720700 - L1MCb LINE L1 -5789 256 121 1123 283 52 71 chr15 8975060 8975777 -76719977 - MER21B LTR ERV1 -137 726 24 1546 127 5 0 chr15 8976090 8976303 -76719451 + AluSg/x SINE Alu 68 281 -29 4018 74 6 4 chr15 8976304 8976793 -76718961 + LTR2B LTR ERV1 1 490 0 432 37 0 0 chr15 8976794 8976848 -76718906 + (CATAA)n Simple_repeat Simple_repeat 1 54 0 1777 216 35 0 chr15 8976849 8977191 -76718563 - ERVL LTR ERVL -4360 1404 1051 629 122 218 27 chr15 8977192 8977339 -76718415 - MER4C LTR ERV1 0 465 291 275 29 0 229 chr15 8977390 8977460 -76718294 - MER4A LTR ERV1 -305 359 306 1563 153 63 39 chr15 8977468 8977802 -76717952 - MER4A LTR ERV1 -322 342 1 548 181 211 0 chr15 8977802 8977935 -76717819 - ERVL LTR ERVL -4711 1053 893 961 55 55 0 chr15 8977938 8978066 -76717688 + MER30 DNA MER1_type 4 138 -92 2263 81 7 0 chr15 8978066 8978350 -76717404 - AluY SINE Alu -17 294 9 2562 68 0 0 chr15 8978842 8979152 -76716602 - AluY SINE Alu -1 310 1 282 238 62 0 chr15 8979301 8979381 -76716373 + L1ME3 LINE L1 5550 5634 -536 654 256 84 9 chr15 8979384 8979599 -76716155 + L1ME3 LINE L1 5733 5963 -199 234 221 122 28 chr15 8980761 8980893 -76714861 + MIR SINE MIR 53 203 -59 1776 151 4 0 chr15 8980948 8981226 -76714528 + AluSx SINE Alu 1 279 -33 186 43 0 0 chr15 8981231 8981254 -76714500 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 347 228 43 0 chr15 8981677 8981769 -76713985 + L1M4 LINE L1 3863 3958 -2188 631 196 43 0 chr15 8981776 8981914 -76713840 + L1MC1 LINE L1 6128 6271 -62 551 149 33 66 chr15 8981914 8982021 -76713733 + L1MC1 LINE L1 6206 6322 -11 2046 124 0 7 chr15 8982027 8982340 -76713414 + AluSc SINE Alu 1 311 0 2312 78 0 13 chr15 8982366 8982673 -76713081 + AluY SINE Alu 1 303 -8 2436 55 0 19 chr15 8983606 8983916 -76711838 + AluY SINE Alu 1 304 -7 2387 67 3 3 chr15 8984554 8984851 -76710903 - AluY SINE Alu -14 297 1 674 99 10 0 chr15 8985472 8985573 -76710181 - LTR1B LTR ERV1 -724 102 1 1836 213 28 14 chr15 8985628 8985985 -76709769 - MLT2B2 LTR ERVL -54 461 100 271 194 237 0 chr15 8986052 8986145 -76709609 - MLT2B2 LTR ERVL -400 115 1 3662 228 129 29 chr15 8986203 8987816 -76707938 - L1MDb LINE L1 -4666 1740 6 2285 65 45 3 chr15 8987978 8988269 -76707485 + AluY SINE Alu 1 303 -8 22 0 0 0 chr15 8988328 8988350 -76707404 + AT_rich Low_complexity Low_complexity 1 22 0 717 269 62 88 chr15 8988355 8988897 -76706857 + HAL1 LINE L1 1059 1584 -923 2834 121 45 17 chr15 8988897 8989319 -76706435 + MER57B LTR ERV1 1 434 0 717 269 62 88 chr15 8989319 8989401 -76706353 + HAL1 LINE L1 1584 1667 -840 232 284 31 0 chr15 8989427 8989502 -76706252 - MER20B DNA MER1_type -5 214 135 2020 178 109 5 chr15 8989734 8990155 -76705599 - MLT1C LTR MaLR 0 467 3 888 97 24 16 chr15 8990591 8990715 -76705039 + AluY SINE Alu 1 125 -186 2409 73 0 3 chr15 8991086 8991387 -76704367 + AluY SINE Alu 1 300 -11 1452 137 5 0 chr15 8992173 8992378 -76703376 - L1MC1 LINE L1 -6 6327 6122 190 120 20 60 chr15 8992425 8992475 -76703279 + MIR SINE MIR 107 154 -108 972 158 0 19 chr15 8992484 8992665 -76703089 + FRAM SINE Alu 1 176 0 474 91 0 15 chr15 8994298 8994364 -76701390 - Alu SINE Alu -243 66 2 452 194 21 0 chr15 8994963 8995056 -76700698 - MER103 DNA DNA -21 145 51 301 275 18 37 chr15 8995102 8995211 -76700543 + MER5C DNA MER1_type 18 124 -200 1519 135 191 44 chr15 8995673 8995917 -76699837 + MER47A DNA MER2_type 1 208 -2115 234 0 0 0 chr15 8995917 8995943 -76699811 + (TTTAA)n Simple_repeat Simple_repeat 5 30 0 2090 115 3 7 chr15 8995944 8996232 -76699522 - AluSp SINE Alu -26 287 1 1519 135 191 44 chr15 8996232 8996304 -76699450 + MER47A DNA MER2_type 207 366 0 2258 69 38 0 chr15 8997104 8997392 -76698362 - AluY SINE Alu -8 303 5 297 128 0 0 chr15 8997396 8997443 -76698311 + (T)n Simple_repeat Simple_repeat 1 47 0 21 89 0 0 chr15 8997969 8998025 -76697729 + AT_rich Low_complexity Low_complexity 1 56 0 28 0 0 0 chr15 8998302 8998330 -76697424 + AT_rich Low_complexity Low_complexity 1 28 0 2254 86 0 0 chr15 8998732 8999052 -76696702 - AluSg SINE Alu 0 321 2 185 81 0 54 chr15 9000323 9000360 -76695394 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 867 243 96 35 chr15 9000621 9001016 -76694738 + LTR37A LTR ERV1 8 426 0 2072 100 0 31 chr15 9002046 9002336 -76693418 - AluY SINE Alu -13 298 18 218 211 158 0 chr15 9002931 9003007 -76692747 + MIR SINE MIR 113 200 -62 207 247 185 0 chr15 9003293 9003374 -76692380 + L2 LINE L2 3139 3234 -38 288 303 91 23 chr15 9004238 9004411 -76691343 - MIR SINE MIR -62 146 5 1575 90 172 4 chr15 9004486 9004742 -76691012 + AluJo SINE Alu 1 299 -3 2146 186 28 2 chr15 9005623 9006059 -76689695 - L1 LINE L1 -2369 3777 3331 2210 81 7 7 chr15 9006062 9006360 -76689394 - AluY SINE Alu -9 302 5 495 33 0 0 chr15 9006371 9006432 -76689322 + (CA)n Simple_repeat Simple_repeat 2 62 0 22 56 0 0 chr15 9006529 9006565 -76689189 + GC_rich Low_complexity Low_complexity 1 36 0 1962 97 10 34 chr15 9007441 9007739 -76688015 + AluSq SINE Alu 1 291 -22 2058 86 0 95 chr15 9007740 9008077 -76687677 - AluSg SINE Alu -5 305 1 2355 68 0 10 chr15 9008260 9008586 -76687168 - AluY SINE Alu 0 311 1 1350 122 5 0 chr15 9008586 9008775 -76686979 + Charlie3 DNA MER1_type 2513 2702 -8 1304 146 5 0 chr15 9008777 9008997 -76686757 - L1MB3 LINE L1 -259 5924 5704 2067 130 0 3 chr15 9009072 9009357 -76686397 - AluSx SINE Alu -28 284 1 3640 203 44 20 chr15 9009357 9010317 -76685437 - L1MB3 LINE L1 -724 5460 4475 1642 167 7 24 chr15 9010899 9011193 -76684561 + AluJo SINE Alu 1 289 -23 243 233 29 24 chr15 9011245 9011329 -76684425 + MIR SINE MIR 69 153 -55 6426 13 1 0 chr15 9013011 9013724 -76682030 - L1PA3 LINE L1 0 6155 5442 429 70 0 0 chr15 9014057 9014114 -76681640 + (CA)n Simple_repeat Simple_repeat 1 57 0 598 246 40 6 chr15 9015389 9015564 -76680190 - MIR SINE MIR -31 231 51 2418 54 0 0 chr15 9015698 9015977 -76679777 + AluY SINE Alu 1 279 -32 233 29 29 0 chr15 9015977 9016011 -76679743 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 2071 138 0 0 chr15 9016772 9017070 -76678684 + AluSx SINE Alu 3 300 -12 237 216 0 20 chr15 9017070 9017121 -76678633 + L2 LINE L2 3264 3313 0 29 47 0 0 chr15 9017160 9017203 -76678551 + AT_rich Low_complexity Low_complexity 1 43 0 267 173 77 0 chr15 9017603 9017655 -76678099 - L1ME4a LINE L1 -72 6049 5994 454 294 18 12 chr15 9017665 9017828 -76677926 + (CATATA)n Simple_repeat Simple_repeat 3 166 0 2230 109 3 10 chr15 9017888 9018199 -76677555 + AluSx SINE Alu 1 309 -3 521 199 352 0 chr15 9018199 9018415 -76677339 - L1ME4a LINE L1 -303 5818 5527 1099 253 143 104 chr15 9018685 9019696 -76676058 + L1ME4a LINE L1 4409 5380 -741 2383 96 0 3 chr15 9019696 9019998 -76675756 - AluSx SINE Alu -11 301 1 1099 253 143 104 chr15 9019998 9020369 -76675385 + L1ME4a LINE L1 5380 5735 -386 606 103 0 0 chr15 9020369 9020456 -76675298 + L1MA3 LINE L1 6219 6305 0 1099 253 143 104 chr15 9020456 9020577 -76675177 + L1ME4a LINE L1 5735 5850 -271 2185 85 0 85 chr15 9020577 9020906 -76674848 - AluSx SINE Alu -11 301 1 1099 253 143 104 chr15 9020906 9021003 -76674751 + L1ME4a LINE L1 5850 6110 -11 1534 182 26 77 chr15 9021523 9021914 -76673840 + MLT1A2 LTR MaLR 4 374 0 252 299 41 0 chr15 9022381 9022478 -76673276 + MIR SINE MIR 92 192 -70 2457 86 0 13 chr15 9023457 9023772 -76671982 - AluY SINE Alu 0 311 1 1590 80 40 18 chr15 9024057 9024282 -76671472 + MER30 DNA MER1_type 1 230 0 953 157 42 237 chr15 9024373 9024523 -76671231 - L1MD3 LINE L1 -10 7985 7808 667 189 15 8 chr15 9024523 9024655 -76671099 + U8 snRNA snRNA 4 136 0 953 157 42 237 chr15 9024655 9024879 -76670875 - L1MD3 LINE L1 -187 7808 7542 195 42 0 0 chr15 9024879 9024903 -76670851 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1990 114 0 0 chr15 9024904 9025167 -76670587 - AluSg SINE Alu -47 263 1 953 157 42 237 chr15 9025167 9025313 -76670441 - L1MD3 LINE L1 -258 7737 7564 328 279 38 51 chr15 9025785 9025943 -76669811 + L2 LINE L2 3158 3313 0 23 33 0 0 chr15 9026036 9026066 -76669688 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr15 9026833 9026861 -76668893 + AT_rich Low_complexity Low_complexity 1 28 0 2091 119 3 0 chr15 9028242 9028536 -76667218 + AluSq SINE Alu 19 313 0 24 67 0 0 chr15 9029164 9029209 -76666545 + AT_rich Low_complexity Low_complexity 1 45 0 830 150 0 15 chr15 9029514 9029647 -76666107 - FLAM_C SINE Alu -1 132 2 328 258 130 47 chr15 9029965 9030178 -76665576 + MIR SINE MIR 3 225 -37 1872 76 126 14 chr15 9030178 9030455 -76665299 - AluY SINE Alu -3 308 1 418 311 11 11 chr15 9031417 9031600 -76664154 - L1ME LINE L1 -400 5721 5539 1108 176 33 20 chr15 9031748 9031992 -76663762 - L1MB4 LINE L1 -12 6168 5922 3185 145 0 6 chr15 9031992 9032490 -76663264 - LOR1a LTR ERV1 0 497 3 1345 141 58 21 chr15 9032620 9032862 -76662892 + L1PB4 LINE L1 5905 6155 -1 2301 75 0 0 chr15 9032871 9033187 -76662567 + AluY SINE Alu 1 316 0 316 307 103 16 chr15 9033531 9033909 -76661845 - L1ME4a LINE L1 -2 6119 5709 235 328 54 37 chr15 9033915 9034210 -76661544 + L2 LINE L2 2766 3067 -205 2095 136 31 31 chr15 9035105 9035465 -76660289 + MLT1A1 LTR MaLR 6 365 0 3524 171 88 1 chr15 9035505 9036195 -76659559 + L1MB7 LINE L1 5377 6126 -58 399 157 0 0 chr15 9036195 9036265 -76659489 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 347 264 23 0 chr15 9036266 9036353 -76659401 - L1MC4 LINE L1 -1339 6703 6615 2353 98 0 19 chr15 9036405 9036722 -76659032 + AluSp SINE Alu 1 311 -2 2204 112 13 13 chr15 9037213 9037517 -76658237 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr15 9037608 9037636 -76658118 + AT_rich Low_complexity Low_complexity 1 28 0 679 189 8 8 chr15 9037651 9037773 -76657981 + FLAM_C SINE Alu 6 127 -16 24 0 0 0 chr15 9037865 9037889 -76657865 + AT_rich Low_complexity Low_complexity 1 24 0 366 236 27 45 chr15 9038215 9038325 -76657429 + L1ME4a LINE L1 5743 5850 -271 2333 88 3 0 chr15 9038333 9038629 -76657125 + AluSp SINE Alu 1 297 -16 2263 103 0 0 chr15 9038802 9039103 -76656651 + AluY SINE Alu 1 301 -10 21 0 0 0 chr15 9039335 9039356 -76656398 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr15 9039658 9039697 -76656057 + AT_rich Low_complexity Low_complexity 1 39 0 1411 159 12 78 chr15 9043873 9044089 -76651665 - AluJo SINE Alu 0 312 124 1880 110 28 41 chr15 9044089 9044379 -76651375 + AluSp SINE Alu 2 287 -26 1411 159 12 78 chr15 9044379 9044495 -76651259 - AluJo SINE Alu -188 124 2 1816 132 13 16 chr15 9044530 9044833 -76650921 + AluSp SINE Alu 5 306 -7 523 198 9 0 chr15 9044837 9044943 -76650811 - AluJb SINE Alu -204 108 2 1708 139 23 16 chr15 9044979 9045282 -76650472 + AluSp SINE Alu 6 310 -3 284 136 0 0 chr15 9045282 9045326 -76650428 - AluJb SINE Alu -188 114 71 * 1510 226 91 39 chr15 9045317 9045756 -76649998 + MLT1D LTR MaLR 44 505 0 1751 194 23 33 chr15 9046295 9046693 -76649061 - L1MB2 LINE L1 0 6171 5778 381 43 0 0 chr15 9046693 9046740 -76649014 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 899 168 14 0 chr15 9046740 9046883 -76648871 - AluJb SINE Alu -30 282 138 1636 156 19 16 chr15 9047366 9047674 -76648080 - L1MB7 LINE L1 0 6184 5876 26 30 0 0 chr15 9050700 9050733 -76645021 + AT_rich Low_complexity Low_complexity 1 33 0 518 204 138 13 chr15 9050776 9050928 -76644826 - MIR SINE MIR -64 198 28 2055 105 13 33 chr15 9051081 9051385 -76644369 - AluSx SINE Alu -12 300 3 342 67 0 0 chr15 9052549 9052594 -76643160 + (TG)n Simple_repeat Simple_repeat 2 46 0 251 204 0 0 chr15 9052606 9052655 -76643099 + MIR SINE MIR 184 232 -30 944 247 127 33 chr15 9052685 9053199 -76642555 - HAL1 LINE L1 -877 1630 1069 632 237 117 94 chr15 9053200 9053724 -76642030 - MLT1H1 LTR MaLR 0 555 19 245 239 127 25 chr15 9053742 9053939 -76641815 - HAL1 LINE L1 -1437 1070 854 2253 117 3 0 chr15 9053966 9054265 -76641489 - AluSp SINE Alu -13 300 1 1846 144 3 31 chr15 9054329 9054663 -76641091 + AluJo SINE Alu 1 326 0 346 286 93 65 chr15 9054936 9055226 -76640528 - HAL1 LINE L1 -2167 340 43 902 217 37 28 chr15 9055609 9055826 -76639928 + MER20 DNA MER1_type 1 219 0 2525 60 0 13 chr15 9055956 9056258 -76639496 + AluY SINE Alu 5 302 -9 270 0 0 0 chr15 9056696 9056726 -76639028 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2129 118 7 0 chr15 9056726 9057005 -76638749 - AluY SINE Alu -27 284 1 2064 124 10 0 chr15 9058468 9058480 -76637274 - AluY SINE Alu -17 294 284 213 65 0 0 chr15 9058480 9058511 -76637243 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 2064 124 10 0 chr15 9058511 9058789 -76636965 - AluY SINE Alu -27 284 1 334 251 99 41 chr15 9061446 9061469 -76634285 + MIR SINE MIR 12 32 -230 2211 105 7 3 chr15 9061469 9061764 -76633990 + AluY SINE Alu 1 296 -15 334 251 99 41 chr15 9061764 9061911 -76633843 + MIR SINE MIR 32 192 -70 225 364 0 0 chr15 9062842 9062941 -76632813 + MIR SINE MIR 31 129 -79 284 241 78 26 chr15 9062998 9063114 -76632640 + L2 LINE L2 3146 3267 -5 233 173 58 0 chr15 9064450 9064502 -76631252 + L1MC4a LINE L1 5885 5939 -1869 300 53 0 0 chr15 9064505 9064543 -76631211 + (TG)n Simple_repeat Simple_repeat 2 39 0 424 222 104 47 chr15 9064729 9064899 -76630855 + MIR SINE MIR 16 192 -58 1926 145 0 26 chr15 9067024 9067327 -76628427 + AluSx SINE Alu 3 297 -15 225 250 102 0 chr15 9067378 9067466 -76628288 + MIR SINE MIR 96 192 -70 917 175 0 18 chr15 9068172 9068338 -76627416 + 7SLRNA srpRNA srpRNA 95 257 -63 240 86 0 0 chr15 9069464 9069499 -76626255 + (TGGGGG)n Simple_repeat Simple_repeat 6 40 0 22 35 0 0 chr15 9072833 9072862 -76622892 + AT_rich Low_complexity Low_complexity 1 29 0 240 83 0 0 chr15 9073532 9073568 -76622186 - MER5A DNA MER1_type -80 109 74 2316 60 3 13 chr15 9073572 9073871 -76621883 - AluY SINE Alu -15 296 1 303 196 0 0 chr15 9073886 9073932 -76621822 + Tigger3(Golem) DNA MER2_type 4 49 -2980 844 124 0 0 chr15 9073936 9074057 -76621697 - Tigger3(Golem) DNA MER2_type -746 2283 2163 399 198 10 79 chr15 9074054 9074155 -76621599 - Tigger3(Golem) DNA MER2_type -2869 160 67 * 2344 80 3 13 chr15 9074155 9074468 -76621286 - AluY SINE Alu -1 310 1 232 37 0 0 chr15 9074469 9074496 -76621258 - Tigger3(Golem) DNA MER2_type -2947 82 56 * 3955 122 69 36 chr15 9074494 9074563 -76621191 + Tigger3(Golem) DNA MER2_type 2276 2341 -687 1907 165 0 3 chr15 9074563 9074860 -76620894 - AluJb SINE Alu -16 296 1 3955 122 69 36 chr15 9074860 9075248 -76620506 + Tigger3(Golem) DNA MER2_type 2341 2768 -260 2380 101 3 0 chr15 9075248 9075555 -76620199 + AluSc SINE Alu 1 308 -1 3955 122 69 36 chr15 9075555 9075824 -76619930 + Tigger3(Golem) DNA MER2_type 2768 3027 -1 828 297 93 13 chr15 9075913 9076310 -76619444 - LTR16A LTR ERVL -6 444 16 2445 43 4 0 chr15 9076436 9076736 -76619018 + AluY SINE Alu 1 301 0 2000 113 0 0 chr15 9077192 9077449 -76618305 + AluSx SINE Alu 1 257 -55 296 289 107 8 chr15 9078605 9078726 -76617028 - L2 LINE L2 -4 3268 3136 282 309 89 30 chr15 9078826 9078994 -76616760 - MIR SINE MIR 0 262 85 1711 175 49 0 chr15 9079043 9079329 -76616425 + AluJb SINE Alu 1 300 -12 253 235 122 0 chr15 9079329 9079418 -76616336 - MER3 DNA MER1_type -3 159 56 370 197 197 16 chr15 9079573 9079700 -76616054 - L1MC4a LINE L1 -1883 5925 5776 * 1422 253 63 15 chr15 9079697 9079754 -76616000 + L1MC/D LINE L1 5377 5430 -2378 2165 122 0 0 chr15 9079754 9080050 -76615704 + AluSx SINE Alu 1 296 -16 1422 253 63 15 chr15 9080050 9080388 -76615366 + L1MC/D LINE L1 5430 5791 -2017 24 53 0 0 chr15 9080619 9080657 -76615097 + AT_rich Low_complexity Low_complexity 1 38 0 2373 94 0 0 chr15 9080740 9081047 -76614707 + AluSg1 SINE Alu 1 307 -2 253 283 123 47 chr15 9081768 9081874 -76613880 - L2 LINE L2 0 3313 3200 2044 152 0 0 chr15 9083052 9083348 -76612406 - AluSx SINE Alu -11 301 6 2788 137 98 7 chr15 9083508 9084049 -76611705 - L1MB7 LINE L1 -16 6168 5579 1234 135 14 19 chr15 9084050 9084265 -76611489 - L1PA13 LINE L1 0 6163 5950 209 57 29 0 chr15 9085613 9085648 -76610106 + (TTA)n Simple_repeat Simple_repeat 1 36 0 879 169 6 62 chr15 9085697 9085875 -76609879 - AluJb SINE Alu -144 168 1 2072 114 4 4 chr15 9085920 9086221 -76609533 - AluSx SINE Alu 0 303 3 889 182 40 45 chr15 9087231 9087407 -76608347 - MER20 DNA MER1_type 0 219 45 2538 64 0 3 chr15 9088140 9088452 -76607302 - AluY SINE Alu 0 311 1 315 283 91 43 chr15 9088491 9088678 -76607076 + MIR SINE MIR 36 231 -31 504 285 124 0 chr15 9089141 9089334 -76606420 - MIR SINE MIR -5 257 41 2329 51 3 37 chr15 9089337 9089632 -76606122 + AluY SINE Alu 5 289 -22 1047 179 66 0 chr15 9090869 9091081 -76604673 + AluJb SINE Alu 1 226 -86 805 104 9 0 chr15 9091268 9091374 -76604380 - AluSq/x SINE Alu -206 107 1 592 143 0 17 chr15 9091670 9091789 -76603965 + (TTCC)n Simple_repeat Simple_repeat 1 117 0 2227 118 0 7 chr15 9091790 9092096 -76603658 - AluSx SINE Alu -8 304 1 2772 139 98 7 chr15 9092251 9092792 -76602962 - L1MB7 LINE L1 -16 6168 5579 1234 135 14 19 chr15 9092793 9093008 -76602746 - L1PA13 LINE L1 0 6163 5950 2668 7 0 0 chr15 9093425 9093706 -76602048 - AluYa5 SINE Alu -9 302 22 229 282 0 0 chr15 9094605 9094676 -76601078 + T-rich Low_complexity Low_complexity 1 71 0 907 154 6 82 chr15 9094727 9094909 -76600845 - AluJo SINE Alu -144 168 1 2383 94 0 3 chr15 9094952 9095259 -76600495 - AluSx SINE Alu -4 308 3 290 298 107 8 chr15 9096077 9096198 -76599556 - L2 LINE L2 -4 3268 3136 262 270 78 43 chr15 9096351 9096466 -76599288 - MIR SINE MIR -59 203 85 433 270 57 0 chr15 9096499 9096515 -76599239 - MER3 DNA MER1_type 6 168 154 1777 170 49 0 chr15 9096515 9096803 -76598951 + AluJb SINE Alu 1 302 -10 433 270 57 0 chr15 9096803 9096945 -76598809 - MER3 DNA MER1_type -8 154 1 1236 159 15 0 chr15 9097349 9097544 -76598210 + AluJo SINE Alu 4 201 -111 313 326 126 23 chr15 9099819 9099994 -76595760 + L1MEd LINE L1 908 1100 -5019 427 189 14 0 chr15 9100008 9100082 -76595672 + MER33 DNA MER1_type 4 78 -246 529 285 104 10 chr15 9100131 9100324 -76595430 + L2 LINE L2 3103 3313 0 238 288 16 114 chr15 9101510 9101524 -76594230 + L2 LINE L2 2896 2910 -362 1997 130 0 18 chr15 9101524 9101844 -76593910 - AluSx SINE Alu 0 320 6 238 288 16 114 chr15 9101844 9102012 -76593742 + L2 LINE L2 2910 3061 -211 1350 179 0 17 chr15 9102384 9102618 -76593136 + AluSg/x SINE Alu 83 312 0 273 149 23 11 chr15 9103016 9103103 -76592651 + (TG)n Simple_repeat Simple_repeat 1 88 0 2475 74 0 3 chr15 9103472 9103783 -76591971 + AluY SINE Alu 1 310 -1 229 178 22 0 chr15 9104201 9104246 -76591508 + Alu SINE Alu 121 166 -137 248 250 31 0 chr15 9104480 9104544 -76591210 + MLT1K LTR MaLR 484 549 -39 1968 122 7 0 chr15 9104698 9104969 -76590785 - AluSq SINE Alu -6 307 35 191 352 57 9 chr15 9105249 9105354 -76590400 + L2 LINE L2 3199 3308 -5 531 268 89 89 chr15 9105727 9105842 -76589912 + MIR SINE MIR 25 142 -120 1762 117 0 0 chr15 9105842 9106073 -76589681 + AluSx SINE Alu 58 288 -24 531 268 89 89 chr15 9106073 9106181 -76589573 + MIR SINE MIR 141 248 -14 1880 206 86 112 chr15 9106226 9106488 -76589266 + L1MC4a LINE L1 6045 6312 -1496 1441 72 111 5 chr15 9106488 9106696 -76589058 - MER30 DNA MER1_type 0 230 1 1880 206 86 112 chr15 9106696 9107273 -76588481 + L1MC4a LINE L1 6312 6862 -946 1853 164 0 26 chr15 9107549 9107874 -76587880 - AluSx SINE Alu 0 312 1 289 294 17 26 chr15 9107986 9108109 -76587645 - L1M4 LINE L1 -2005 4141 4020 739 219 26 0 chr15 9108125 9108280 -76587474 + AluJb SINE Alu 137 295 -17 227 317 0 49 chr15 9108307 9108449 -76587305 - L1M4 LINE L1 -2310 3836 3702 513 316 66 13 chr15 9108450 9108678 -76587076 - MIR SINE MIR -10 252 13 2068 123 0 19 chr15 9109041 9109349 -76586405 - AluY SINE Alu -9 302 1 2184 126 0 19 chr15 9109556 9109873 -76585881 - AluSx SINE Alu -1 311 1 299 261 112 8 chr15 9111394 9111528 -76584226 + MIR SINE MIR 21 168 -94 366 286 164 0 chr15 9111561 9111701 -76584053 + MER5A DNA MER1_type 1 163 -26 416 233 52 9 chr15 9112565 9112681 -76583073 + MIR3 SINE MIR 52 172 -36 314 343 22 7 chr15 9113896 9114033 -76581721 + L2 LINE L2 2250 2388 -926 323 304 59 59 chr15 9114883 9115087 -76580667 - MLT1L LTR MaLR -407 208 5 635 213 41 6 chr15 9116246 9116415 -76579339 + L1ME2 LINE L1 5986 6160 -4 2039 136 3 7 chr15 9116437 9116739 -76579015 + AluSx SINE Alu 1 301 -11 2007 97 104 0 chr15 9117370 9117639 -76578115 - AluSx SINE Alu -15 297 1 30 27 0 0 chr15 9117650 9117687 -76578067 + AT_rich Low_complexity Low_complexity 1 37 0 200 409 0 0 chr15 9118427 9118591 -76577163 + C-rich Low_complexity Low_complexity 1 164 0 * 449 292 0 52 chr15 9118475 9118714 -76577040 + CT-rich Low_complexity Low_complexity 1 226 0 450 340 0 12 chr15 9118842 9119178 -76576576 + CT-rich Low_complexity Low_complexity 1 332 0 181 378 92 0 chr15 9119381 9119500 -76576254 - MER5B DNA MER1_type -32 146 17 200 346 185 0 chr15 9119836 9119966 -76575788 - MIR3 SINE MIR -2 206 53 802 127 6 22 chr15 9120323 9120504 -76575250 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1559 137 17 0 chr15 9120506 9120739 -76575015 - AluSp SINE Alu -1 312 76 265 247 87 10 chr15 9120788 9120955 -76574799 + L1P5 LINE L1 5292 5474 -647 627 223 97 24 chr15 9121675 9121881 -76573873 - MLT1J LTR MaLR 0 511 291 461 31 0 16 chr15 9122189 9122253 -76573501 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 1846 112 8 4 chr15 9122268 9122518 -76573236 - AluSx SINE Alu -61 251 1 707 218 77 0 chr15 9122698 9122868 -76572886 + MER5A DNA MER1_type 5 187 -2 653 293 27 40 chr15 9123084 9123412 -76572342 + L1MC4 LINE L1 7719 8042 0 250 208 130 0 chr15 9123889 9123966 -76571788 - L1 LINE L1 -1310 4836 4750 2342 90 0 7 chr15 9123988 9124288 -76571466 - AluY SINE Alu -13 298 1 709 110 9 0 chr15 9124293 9124402 -76571352 - MLT1B LTR MaLR -218 172 63 2388 94 0 0 chr15 9124544 9124841 -76570913 - AluSg1 SINE Alu -12 297 1 290 299 65 60 chr15 9125956 9126157 -76569597 + MIR3 SINE MIR 2 203 -5 1917 171 0 3 chr15 9127382 9127691 -76568063 + AluJo SINE Alu 1 308 -4 369 250 85 80 chr15 9128954 9129142 -76566612 + MIR SINE MIR 31 219 -43 391 262 27 86 chr15 9129305 9129492 -76566262 + MER5A DNA MER1_type 7 182 -7 359 243 97 10 chr15 9129932 9130035 -76565719 + MIR3 SINE MIR 11 122 -86 317 43 21 0 chr15 9130558 9130605 -76565149 + (CA)n Simple_repeat Simple_repeat 2 49 0 1672 117 12 4 chr15 9130848 9131095 -76564659 + AluSx SINE Alu 52 300 -12 2355 128 113 18 chr15 9131392 9131783 -76563971 - MSTA LTR MaLR 0 428 1 319 304 186 14 chr15 9131792 9132088 -76563666 - L2 LINE L2 -348 2966 2620 497 135 11 0 chr15 9132458 9132547 -76563207 + (TG)n Simple_repeat Simple_repeat 1 90 0 243 293 73 49 chr15 9133019 9133142 -76562612 - L2 LINE L2 -2141 1173 1048 509 271 269 22 chr15 9133222 9133683 -76562071 - L2 LINE L2 -340 2974 2400 584 320 51 22 chr15 9133991 9134408 -76561346 + L2 LINE L2 2654 3083 -189 372 43 0 0 chr15 9134535 9134581 -76561173 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 337 310 158 19 chr15 9135040 9135263 -76560491 - MIR SINE MIR -6 256 4 3570 168 60 172 chr15 9135380 9135622 -76560132 + L1MB7 LINE L1 3988 4255 -1923 204 40 0 0 chr15 9135622 9135647 -76560107 + (CA)n Simple_repeat Simple_repeat 2 26 0 3570 168 60 172 chr15 9135647 9135670 -76560084 + L1MB7 LINE L1 4255 4279 -1899 2280 131 0 0 chr15 9135670 9135982 -76559772 + AluSx SINE Alu 1 312 0 3570 168 60 172 chr15 9135982 9136376 -76559378 + L1MB7 LINE L1 4279 4716 -1462 2002 148 7 0 chr15 9136376 9136680 -76559074 + AluJb SINE Alu 1 306 -6 3570 168 60 172 chr15 9136680 9137010 -76558744 + L1MB7 LINE L1 4716 5081 -1097 1178 190 5 0 chr15 9137010 9137205 -76558549 + AluJb SINE Alu 96 291 -21 3570 168 60 172 chr15 9137205 9137409 -76558345 + L1MB7 LINE L1 5081 5154 -1024 2271 114 0 10 chr15 9137409 9137715 -76558039 + AluSq SINE Alu 1 303 -10 3570 168 60 172 chr15 9137715 9138027 -76557727 + L1MB7 LINE L1 5154 5499 -679 * 5695 36 0 0 chr15 9138024 9138724 -76557030 - L1PA4 LINE L1 -1441 4705 4006 7580 33 3 1 chr15 9138724 9140176 -76555578 + L1PA4 LINE L1 4702 6155 0 2990 134 61 78 chr15 9140178 9140482 -76555272 + L1MB7 LINE L1 5494 5802 -382 1906 155 7 0 chr15 9140482 9140778 -76554976 + AluJo SINE Alu 1 298 -14 2990 134 61 78 chr15 9140778 9141176 -76554578 + L1MB7 LINE L1 5802 6184 0 191 219 49 0 chr15 9141785 9141826 -76553928 - L2 LINE L2 -6 3307 3265 388 238 30 0 chr15 9142002 9142103 -76553651 + L1ME LINE L1 5714 5817 -304 748 284 60 0 chr15 9142717 9142932 -76552822 + MIR SINE MIR 5 232 -30 305 183 11 53 chr15 9142944 9143037 -76552717 - FRAM SINE Alu -68 98 41 233 189 0 0 chr15 9143063 9143100 -76552654 - Alu SINE Alu -12 121 85 1621 175 3 21 chr15 9144301 9144586 -76551168 + AluJo SINE Alu 10 289 -23 311 251 34 19 chr15 9144632 9144739 -76551015 + MIR3 SINE MIR 59 170 -38 294 29 0 0 chr15 9146748 9146783 -76548971 + (CA)n Simple_repeat Simple_repeat 1 35 0 24 32 0 0 chr15 9148927 9148958 -76546796 + AT_rich Low_complexity Low_complexity 1 31 0 1592 172 62 14 chr15 9149891 9150181 -76545573 - AluJo SINE Alu -7 305 2 329 294 143 53 chr15 9150197 9150462 -76545292 - L1M4 LINE L1 -1984 4162 3874 1712 156 4 7 chr15 9150974 9151243 -76544511 - AluJo SINE Alu -43 269 2 21 0 0 0 chr15 9151252 9151273 -76544481 + AT_rich Low_complexity Low_complexity 1 21 0 1777 180 3 7 chr15 9151691 9151997 -76543757 - AluJo SINE Alu -7 305 1 2146 119 10 0 chr15 9152054 9152348 -76543406 + AluSx SINE Alu 5 301 -11 341 289 10 10 chr15 9205296 9205393 -76490361 - MIR SINE MIR -102 160 64 334 291 39 21 chr15 9205417 9205623 -76490131 - MIR SINE MIR -5 257 10 1366 182 42 6 chr15 9205642 9205955 -76489799 + MER33 DNA MER1_type 1 324 0 21 0 0 0 chr15 9205963 9205984 -76489770 + AT_rich Low_complexity Low_complexity 1 21 0 2185 119 0 7 chr15 9206414 9206717 -76489037 - AluSx SINE Alu -7 305 5 330 321 128 5 chr15 9209723 9209910 -76485844 - MIR SINE MIR -6 256 47 180 0 0 0 chr15 9211660 9211680 -76484074 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr15 9212102 9212124 -76483630 + AT_rich Low_complexity Low_complexity 1 22 0 487 188 21 0 chr15 9212156 9212252 -76483502 + MER5A DNA MER1_type 9 106 -83 432 0 0 0 chr15 9212274 9212322 -76483432 + (TG)n Simple_repeat Simple_repeat 2 49 0 1930 112 48 0 chr15 9212489 9212777 -76482977 - AluSg SINE Alu 0 301 1 271 352 25 76 chr15 9214421 9214657 -76481097 + L2 LINE L2 3034 3257 -15 25 0 0 0 chr15 9214832 9214857 -76480897 + AT_rich Low_complexity Low_complexity 1 25 0 926 264 105 54 chr15 9217106 9217659 -76478095 + L1ME4a LINE L1 5302 5882 -239 2059 130 3 23 chr15 9217953 9218260 -76477494 - AluSx SINE Alu -11 301 1 2390 76 0 10 chr15 9218954 9219256 -76476498 - AluY SINE Alu -12 299 1 720 230 158 27 chr15 9219632 9219854 -76475900 + MIR SINE MIR 12 262 0 511 139 13 0 chr15 9219965 9220044 -76475710 + MADE1 DNA Mariner 1 80 0 393 303 70 14 chr15 9220044 9220186 -76475568 - MIR SINE MIR -111 151 2 444 181 0 0 chr15 9220230 9220313 -76475441 - AluJo SINE Alu 0 312 230 1239 174 0 0 chr15 9220321 9220505 -76475249 - AluJo SINE Alu -123 189 6 859 204 11 27 chr15 9220874 9221060 -76474694 + MER5A DNA MER1_type 1 183 -6 299 278 126 13 chr15 9222321 9222472 -76473282 - MIR SINE MIR -6 256 89 1069 227 84 80 chr15 9222685 9223125 -76472629 - MLT1J1 LTR MaLR 0 446 5 857 348 116 29 chr15 9223782 9224466 -76471288 + L3 LINE CR1 74 816 -761 194 314 10 39 chr15 9224612 9224714 -76471040 + L2 LINE L2 1337 1435 -1879 226 243 0 40 chr15 9225310 9225384 -76470370 + GA-rich Low_complexity Low_complexity 2 72 0 306 306 41 0 chr15 9225484 9225582 -76470172 - L2 LINE L2 -30 3242 3141 190 284 0 54 chr15 9226559 9226633 -76469121 - L2 LINE L2 -10 3262 3193 357 264 253 0 chr15 9226691 9226869 -76468885 - MIR SINE MIR -10 252 30 2208 219 158 28 chr15 9227204 9227437 -76468317 - L1MC4 LINE L1 -451 7591 7390 2500 63 0 3 chr15 9227437 9227739 -76468015 + AluY SINE Alu 1 301 -10 2208 219 158 28 chr15 9227739 9227949 -76467805 - L1MC4 LINE L1 -652 7390 7209 195 114 0 0 chr15 9227949 9227984 -76467770 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 2208 219 158 28 chr15 9227984 9228265 -76467489 - L1MC4 LINE L1 -833 7209 6771 2391 44 0 0 chr15 9228598 9228872 -76466882 - AluY SINE Alu -8 303 30 2198 107 0 0 chr15 9232588 9232894 -76462860 + AluSx SINE Alu 1 306 0 23 0 0 0 chr15 9233400 9233423 -76462331 + AT_rich Low_complexity Low_complexity 1 23 0 2610 61 0 0 chr15 9233764 9234074 -76461680 - AluY SINE Alu -1 310 1 21 0 0 0 chr15 9234665 9234686 -76461068 + AT_rich Low_complexity Low_complexity 1 21 0 2620 64 0 0 chr15 9234865 9235176 -76460578 - AluY SINE Alu 0 311 1 254 281 10 42 chr15 9235920 9236016 -76459738 - MIR SINE MIR -56 206 114 1244 194 94 65 chr15 9236041 9236520 -76459234 + L1MC5 LINE L1 7388 7880 -81 2041 141 3 3 chr15 9236529 9236841 -76458913 - AluSx SINE Alu 0 312 1 2263 115 3 0 chr15 9236947 9237251 -76458503 + AluSp SINE Alu 3 307 -6 2075 109 0 53 chr15 9238519 9238841 -76456913 + AluSq SINE Alu 1 305 -8 392 301 44 15 chr15 9239051 9239187 -76456567 - MIR SINE MIR -120 142 3 2108 149 95 0 chr15 9239193 9239561 -76456193 - MER57A LTR ERV1 0 403 1 2441 64 0 7 chr15 9239843 9240141 -76455613 - AluY SINE Alu -15 296 1 248 250 32 105 chr15 9241488 9241612 -76454142 - L2 LINE L2 0 3313 3199 455 309 63 11 chr15 9241681 9241856 -76453898 + MIR SINE MIR 1 184 -78 2248 145 6 6 chr15 9242355 9242692 -76453062 + MER1B DNA MER1_type 1 337 0 437 242 83 8 chr15 9244722 9244842 -76450912 - MER5B DNA MER1_type 0 178 50 258 282 58 63 chr15 9244724 9244898 -76450856 + MER5A DNA MER1_type 17 189 0 * 1822 140 51 14 chr15 9245861 9246154 -76449600 + AluJb SINE Alu 1 304 -8 380 267 61 15 chr15 9246247 9246378 -76449376 - L2 LINE L2 0 3272 3136 2081 111 4 7 chr15 9246491 9246815 -76448939 + AluSc SINE Alu 1 323 0 251 304 13 0 chr15 9246849 9246928 -76448826 - L2 LINE L2 -663 2651 2572 246 128 0 0 chr15 9247743 9247782 -76447972 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 2013 135 0 20 chr15 9248951 9249254 -76446500 + AluSx SINE Alu 1 297 -15 315 105 0 0 chr15 9249269 9249326 -76446428 + (GA)n Simple_repeat Simple_repeat 2 58 0 2637 62 0 0 chr15 9249424 9249733 -76446021 - AluY SINE Alu 0 311 3 587 311 70 4 chr15 9249966 9250194 -76445560 + MIR SINE MIR 6 248 -14 258 32 0 0 chr15 9250219 9250250 -76445504 + (CA)n Simple_repeat Simple_repeat 2 32 0 396 212 74 132 chr15 9250269 9250423 -76445331 + L1ME4a LINE L1 5769 5930 -191 195 42 0 0 chr15 9250423 9250447 -76445307 + (TC)n Simple_repeat Simple_repeat 1 24 0 396 212 74 132 chr15 9250447 9250655 -76445099 + L1ME4a LINE L1 5930 6110 -11 216 0 0 0 chr15 9250866 9250890 -76444864 + (A)n Simple_repeat Simple_repeat 1 24 0 216 0 0 0 chr15 9251499 9251523 -76444231 + (A)n Simple_repeat Simple_repeat 1 24 0 310 259 30 0 chr15 9251558 9251693 -76444061 + CT-rich Low_complexity Low_complexity 2 140 0 2659 42 0 0 chr15 9251787 9252096 -76443658 + AluY SINE Alu 1 309 -2 375 313 83 14 chr15 9252187 9252404 -76443350 - MIR SINE MIR -24 238 7 910 284 59 66 chr15 9253114 9253770 -76441984 - L1MC4a LINE L1 -345 5817 5279 235 296 28 83 chr15 9254458 9254566 -76441188 + L2 LINE L2 3190 3291 -22 * 364 226 58 58 chr15 9254565 9254702 -76441052 - L2 LINE L2 0 3313 3177 285 75 0 0 chr15 9258823 9258863 -76436891 + (TG)n Simple_repeat Simple_repeat 2 41 0 618 266 38 61 chr15 9259566 9259629 -76436125 + MIR SINE MIR 6 69 -193 2183 112 3 3 chr15 9259629 9259942 -76435812 + AluSp SINE Alu 1 313 0 618 266 38 61 chr15 9259942 9260141 -76435613 + MIR SINE MIR 69 262 0 2006 107 39 4 chr15 9260227 9260508 -76435246 + AluSg SINE Alu 1 291 -19 269 217 188 0 chr15 9262793 9262862 -76432892 - L2 LINE L2 -2 3270 3189 7622 55 9 0 chr15 9263395 9264908 -76430846 - L1PA7 LINE L1 -2 6152 4630 15209 82 17 9 chr15 9264908 9267032 -76428722 + L1P LINE L1 2641 4781 -1365 22 35 0 0 chr15 9267251 9267280 -76428474 + AT_rich Low_complexity Low_complexity 1 29 0 2503 60 0 13 chr15 9267681 9267996 -76427758 - AluY SINE Alu 0 311 1 327 315 167 12 chr15 9269109 9269271 -76426483 + MIR SINE MIR 36 222 -40 24 0 0 0 chr15 9269288 9269312 -76426442 + AT_rich Low_complexity Low_complexity 1 24 0 521 332 14 27 chr15 9273678 9273898 -76421856 + L3 LINE CR1 1347 1563 -14 297 281 0 24 chr15 9273975 9274057 -76421697 - MIR SINE MIR -36 226 147 4011 213 56 35 chr15 9274471 9275416 -76420338 + L1M4 LINE L1 5 969 -5573 1277 193 37 15 chr15 9275440 9275709 -76420045 + LTR52 LTR ERVL 144 418 -3 4786 209 51 43 chr15 9275714 9276313 -76419441 + L1M4 LINE L1 3908 4501 -2143 2391 96 0 3 chr15 9276313 9276625 -76419129 + AluSp SINE Alu 1 311 -2 4786 209 51 43 chr15 9276625 9277348 -76418406 + L1M4 LINE L1 4501 5241 -1403 1599 181 77 14 chr15 9277352 9277639 -76418115 + AluJo SINE Alu 1 305 -7 917 213 48 0 chr15 9277640 9277847 -76417907 + L1M4 LINE L1 4548 4764 -1880 2869 216 40 7 chr15 9278243 9279408 -76416346 + L1 LINE L1 3 1375 -4516 342 300 59 41 chr15 9279458 9279628 -76416126 - MLT1K LTR MaLR -282 306 134 4997 196 20 10 chr15 9280028 9281065 -76414689 - L1 LINE L1 -1671 4475 3428 3553 179 32 7 chr15 9281071 9281757 -76413997 + L1 LINE L1 4343 5045 -925 451 269 93 84 chr15 9281760 9282094 -76413660 + MLT1K LTR MaLR 143 479 -109 1106 226 20 8 chr15 9282114 9282362 -76413392 - MLT1F1 LTR MaLR 0 567 317 999 226 92 38 chr15 9282567 9282828 -76412926 - MLT1F1 LTR MaLR -280 287 13 441 172 69 0 chr15 9282838 9282925 -76412829 + MLT1K LTR MaLR 494 586 -2 2442 66 3 3 chr15 9282959 9283262 -76412492 + AluY SINE Alu 1 303 -8 2171 128 0 0 chr15 9286044 9286348 -76409406 - AluSx SINE Alu -8 304 1 1924 156 0 3 chr15 9287518 9287807 -76407947 - AluSx SINE Alu -19 293 6 235 292 73 51 chr15 9287940 9288077 -76407677 + MIR3 SINE MIR 21 160 -48 222 299 87 39 chr15 9288172 9288299 -76407455 - MIR3 SINE MIR -61 147 15 2208 101 0 10 chr15 9288303 9288599 -76407155 - AluSq SINE Alu -20 293 1 272 326 105 0 chr15 9290055 9290193 -76405561 - MIR SINE MIR -65 143 35 495 186 0 0 chr15 9290203 9290305 -76405449 + CT-rich Low_complexity Low_complexity 3 104 0 622 269 96 0 chr15 9290542 9290698 -76405056 + MER45A DNA AcHobo 8 178 0 1303 239 95 26 chr15 9290818 9291282 -76404472 - L1ME3A LINE L1 -224 5929 5434 1224 110 22 16 chr15 9291312 9291494 -76404260 - AluSg/x SINE Alu -10 302 120 793 289 97 33 chr15 9291501 9292290 -76403464 - L1ME3A LINE L1 -743 5386 4530 1585 168 32 72 chr15 9292291 9292611 -76403143 + MLT1A1 LTR MaLR 5 336 -29 2578 118 91 30 chr15 9292611 9292806 -76402948 + MSTB1 LTR MaLR 1 183 -249 2222 89 3 7 chr15 9292806 9293109 -76402645 + AluSg SINE Alu 2 303 -7 2578 118 91 30 chr15 9293109 9293318 -76402436 + MSTB1 LTR MaLR 183 430 -2 1585 168 32 72 chr15 9293318 9293333 -76402421 + MLT1A1 LTR MaLR 336 350 -15 2139 137 3 0 chr15 9293333 9293639 -76402115 - AluJb SINE Alu -5 307 1 1585 168 32 72 chr15 9293639 9293678 -76402076 + MLT1A1 LTR MaLR 350 365 0 1543 256 120 36 chr15 9294200 9295057 -76400697 - L1ME3A LINE L1 -1958 4171 3243 * 5328 133 8 17 chr15 9295034 9296623 -76399131 - L1MA1 LINE L1 -243 6042 4471 1063 279 127 33 chr15 9296624 9297513 -76398241 - L1ME3A LINE L1 -2853 3276 2304 324 274 91 48 chr15 9297635 9297843 -76397911 - L1ME3A LINE L1 -3969 2341 2125 4361 118 20 3 chr15 9297843 9298497 -76397257 - Tigger4(Zombi) DNA MER2_type -1 2730 2066 1015 134 117 0 chr15 9298496 9298667 -76397087 - Tigger4(Zombi) DNA MER2_type -2540 191 1 * 410 289 90 56 chr15 9298686 9299041 -76396713 - L1MDa LINE L1 -4785 1344 1003 2455 67 0 3 chr15 9299041 9299339 -76396415 - AluY SINE Alu -14 297 1 410 289 90 56 chr15 9299339 9299723 -76396031 - L1MDa LINE L1 -5126 1003 562 886 187 34 9 chr15 9299723 9299909 -76395845 - MER20 DNA MER1_type -12 207 2 1739 174 6 40 chr15 9300787 9301114 -76394640 + LTR62 LTR ERVK 1 316 -403 2385 100 47 0 chr15 9301118 9301457 -76394297 - THE1A LTR MaLR 0 355 1 1733 72 4 0 chr15 9301457 9301692 -76394062 - THE1A-int LTR MaLR 0 1580 1345 2495 62 0 3 chr15 9301692 9301996 -76393758 + AluY SINE Alu 1 303 -8 934 211 93 117 chr15 9302180 9302729 -76393025 + MLT1F LTR MaLR 1 542 0 896 254 111 18 chr15 9302937 9303271 -76392483 + MLT1A1 LTR MaLR 1 365 0 210 281 49 49 chr15 9303611 9303693 -76392061 + MIR SINE MIR 30 111 -97 21 0 0 0 chr15 9304678 9304699 -76391055 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 9306621 9306642 -76389112 + AT_rich Low_complexity Low_complexity 1 21 0 2389 55 7 3 chr15 9309973 9310263 -76385491 - AluY SINE Alu -20 291 1 474 259 149 18 chr15 9314886 9315114 -76380640 - MIR SINE MIR -3 259 2 363 341 24 24 chr15 9315226 9315352 -76380402 + MIR SINE MIR 25 150 -58 241 284 30 0 chr15 9315818 9315885 -76379869 + GA-rich Low_complexity Low_complexity 4 72 0 323 133 86 0 chr15 9316322 9316473 -76379281 + (TA)n Simple_repeat Simple_repeat 2 165 0 379 159 33 71 chr15 9316570 9316752 -76379002 + (CATATA)n Simple_repeat Simple_repeat 4 178 0 320 117 98 0 chr15 9316761 9316924 -76378830 + (TA)n Simple_repeat Simple_repeat 1 179 0 202 106 43 0 chr15 9316948 9316995 -76378759 + (TA)n Simple_repeat Simple_repeat 2 50 0 636 99 0 0 chr15 9316995 9317076 -76378678 - AluSg/x SINE Alu -23 287 207 3857 155 59 62 chr15 9317076 9318050 -76377704 + L1MB7 LINE L1 5211 6184 0 314 308 136 18 chr15 9318066 9318339 -76377415 + L1MC/D LINE L1 5438 5742 -2066 511 254 48 0 chr15 9318375 9318501 -76377253 - MIR SINE MIR 0 262 131 495 315 73 0 chr15 9318674 9318839 -76376915 + MIR SINE MIR 11 187 -75 3846 115 2 4 chr15 9318844 9319399 -76376355 + MER41A LTR ERV1 1 554 0 286 113 57 0 chr15 9319399 9319452 -76376302 + MER41A-int LTR ERV1 1 56 -7700 25 0 0 0 chr15 9319854 9319879 -76375875 + AT_rich Low_complexity Low_complexity 1 25 0 495 291 7 14 chr15 9320155 9320296 -76375458 - MER58A DNA MER1_type 0 140 1 341 270 50 38 chr15 9320389 9320551 -76375203 + MIR SINE MIR 45 205 -57 212 302 0 16 chr15 9321242 9321305 -76374449 - MIR SINE MIR -59 149 88 2115 153 32 19 chr15 9321451 9321862 -76373892 + L1PB4 LINE L1 5741 6156 0 2465 74 10 7 chr15 9322164 9322474 -76373280 + AluY SINE Alu 1 311 0 297 0 0 0 chr15 9323114 9323147 -76372607 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 489 76 0 0 chr15 9323835 9323901 -76371853 + (TG)n Simple_repeat Simple_repeat 2 67 0 948 162 0 0 chr15 9323918 9324054 -76371700 - FLAM_C SINE Alu -5 138 3 1566 169 41 31 chr15 9326268 9326558 -76369196 + AluJo SINE Alu 1 293 -19 211 273 45 57 chr15 9327793 9327881 -76367873 - L2 LINE L2 0 3272 3186 3752 121 19 3 chr15 9328160 9328745 -76367009 + MER7C DNA MER2_type 2 595 -7 201 245 0 19 chr15 9328982 9329035 -76366719 - MIR3 SINE MIR -6 202 151 268 324 61 4 chr15 9329186 9329312 -76366442 - MER5A DNA MER1_type -37 152 1 453 344 145 37 chr15 9330143 9330881 -76364873 - L2 LINE L2 -533 2781 1964 2109 78 0 21 chr15 9330891 9331174 -76364580 + AluY SINE Alu 35 311 0 794 256 124 42 chr15 9331260 9331710 -76364044 + MLT1J LTR MaLR 25 511 0 2288 107 7 3 chr15 9331971 9332280 -76363474 - AluSx SINE Alu -2 310 1 203 179 0 0 chr15 9333268 9333307 -76362447 + A-rich Low_complexity Low_complexity 1 39 0 1859 128 4 19 chr15 9333616 9333881 -76361873 + AluJo SINE Alu 4 264 -48 367 252 14 91 chr15 9334145 9334288 -76361466 - MIR3 SINE MIR -6 202 71 357 24 0 0 chr15 9336875 9336917 -76358837 + (CA)n Simple_repeat Simple_repeat 2 43 0 321 353 9 0 chr15 9338103 9338219 -76357535 + MIR3 SINE MIR 54 170 -38 351 359 111 11 chr15 9339291 9339472 -76356282 - MIR3 SINE MIR -5 203 5 2018 99 0 87 chr15 9340182 9340515 -76355239 + AluY SINE Alu 1 304 -7 181 290 16 32 chr15 9342195 9342257 -76353497 + L3b LINE CR1 1507 1567 -16 1027 178 61 4 chr15 9342685 9342916 -76352838 + L1MB3 LINE L1 5864 6107 -76 6991 48 22 0 chr15 9343211 9344269 -76351485 - L1PA6 LINE L1 0 6154 5084 350 288 93 0 chr15 9344289 9344407 -76351347 + MER94 DNA DNA 5 133 -1 399 192 212 0 chr15 9344514 9344613 -76351141 - Charlie4 DNA MER1_type -24 1937 1818 580 246 84 22 chr15 9344967 9345146 -76350608 + MIR SINE MIR 57 246 -16 529 298 63 54 chr15 9345211 9345736 -76350018 + L2 LINE L2 2725 3251 -62 285 262 131 16 chr15 9346955 9347077 -76348677 + MIR SINE MIR 28 163 -99 585 302 86 5 chr15 9347193 9347415 -76348339 + MIR SINE MIR 3 242 -20 265 262 36 24 chr15 9347676 9347760 -76347994 - L3b LINE CR1 -208 1375 1291 2254 108 10 0 chr15 9348619 9348914 -76346840 - AluSx SINE Alu -14 298 1 2159 93 59 3 chr15 9350357 9350646 -76345108 - AluSx SINE Alu -7 305 1 315 0 0 0 chr15 9350713 9350748 -76345006 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 651 241 23 0 chr15 9350784 9350958 -76344796 - MER105 DNA DNA -3 201 24 1389 147 39 108 chr15 9351035 9351423 -76344331 - MER46B DNA MER2_type 0 236 1 1865 140 71 9 chr15 9351628 9351950 -76343804 - MER2 DNA MER2_type 0 344 3 21 0 0 0 chr15 9352983 9353004 -76342750 + AT_rich Low_complexity Low_complexity 1 21 0 2443 42 0 0 chr15 9353625 9353939 -76341815 - AluY SINE Alu 0 314 1 205 138 0 0 chr15 9354462 9354491 -76341263 + (TGG)n Simple_repeat Simple_repeat 1 29 0 472 317 70 5 chr15 9354584 9354770 -76340984 + MIR SINE MIR 64 261 -1 241 308 110 0 chr15 9355275 9355366 -76340388 - MIR3 SINE MIR -103 105 5 225 287 93 8 chr15 9356673 9356802 -76338952 - L1ME4a LINE L1 -1 6120 5981 32 43 0 0 chr15 9356957 9357003 -76338751 + AT_rich Low_complexity Low_complexity 1 46 0 424 266 144 29 chr15 9359473 9359751 -76336003 - L1ME4a LINE L1 -875 5271 4962 2366 90 0 3 chr15 9360147 9360447 -76335307 - AluSg1 SINE Alu -10 299 1 2006 100 0 4 chr15 9360785 9361045 -76334709 + AluSx SINE Alu 22 280 -32 189 0 0 0 chr15 9361045 9361066 -76334688 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 373 251 25 31 chr15 9361086 9361249 -76334505 - HAL1 LINE L1 -842 1665 1504 2533 71 0 10 chr15 9361850 9362161 -76333593 - AluY SINE Alu -3 308 1 985 158 0 13 chr15 9363294 9363452 -76332302 - FRAM SINE Alu -7 159 4 982 328 119 39 chr15 9363498 9364424 -76331330 + L2 LINE L2 2222 3268 -4 2229 72 31 10 chr15 9366266 9366557 -76329197 + AluY SINE Alu 1 297 -14 1892 130 69 0 chr15 9366708 9366984 -76328770 + AluSx SINE Alu 1 295 -17 380 245 105 7 chr15 9369772 9369915 -76325839 + MIR SINE MIR 106 262 0 1039 123 7 0 chr15 9369916 9370062 -76325692 - AluSg/x SINE Alu -12 300 154 1992 91 4 4 chr15 9371195 9371449 -76324305 + AluSc SINE Alu 1 254 -55 22 0 0 0 chr15 9372891 9372913 -76322841 + AT_rich Low_complexity Low_complexity 1 22 0 1652 184 7 7 chr15 9374549 9374858 -76320896 - AluJo SINE Alu -3 309 1 571 282 79 0 chr15 9376199 9376401 -76319353 - L2 LINE L2 -1153 2161 1944 495 292 124 13 chr15 9380736 9381186 -76314568 + MLT1G LTR MaLR 41 523 -19 385 283 20 20 chr15 9381227 9381326 -76314428 + L2 LINE L2 3147 3245 -27 211 264 58 109 chr15 9381392 9381541 -76314213 - MIR SINE MIR -50 212 72 2377 105 0 3 chr15 9381541 9381854 -76313900 + AluSp SINE Alu 1 312 -1 211 264 58 109 chr15 9381854 9381878 -76313876 - MIR SINE MIR -190 72 48 24 32 0 0 chr15 9382676 9382707 -76313047 + AT_rich Low_complexity Low_complexity 1 31 0 26 64 0 0 chr15 9383125 9383172 -76312582 + AT_rich Low_complexity Low_complexity 1 47 0 287 294 49 10 chr15 9384286 9384388 -76311366 + MIR SINE MIR 86 191 -71 461 304 22 40 chr15 9384579 9384773 -76310981 - MIR SINE MIR -54 208 20 522 124 0 11 chr15 9384807 9384896 -76310858 + L1MB1 LINE L1 6078 6165 -3 4042 59 47 0 chr15 9384932 9385602 -76310152 + L1PA8A LINE L1 5144 5836 -295 267 31 0 0 chr15 9385972 9386004 -76309750 + (TG)n Simple_repeat Simple_repeat 2 33 0 560 119 0 0 chr15 9386149 9386233 -76309521 + AluS SINE Alu 1 84 -228 2336 82 3 3 chr15 9386271 9386575 -76309179 + AluY SINE Alu 1 304 -7 217 244 0 0 chr15 9387024 9387065 -76308689 + (TG)n Simple_repeat Simple_repeat 2 42 0 977 124 51 0 chr15 9387855 9388033 -76307721 + Tigger3(Golem) DNA MER2_type 2842 3028 -1 202 143 95 0 chr15 9388153 9388195 -76307559 + (CTCA)n Simple_repeat Simple_repeat 1 46 0 456 351 56 56 chr15 9388244 9388529 -76307225 - L2 LINE L2 0 3272 2988 271 352 33 0 chr15 9388819 9388910 -76306844 - L2 LINE L2 -234 3079 2986 * 833 320 142 19 chr15 9388900 9389485 -76306269 - L2 LINE L2 -924 2390 1734 188 329 13 13 chr15 9389533 9389609 -76306145 + L3b LINE CR1 1420 1495 -88 2351 74 3 26 chr15 9390636 9390947 -76304807 - AluY SINE Alu -7 304 1 382 202 73 32 chr15 9391050 9391174 -76304580 - L1MC4a LINE L1 -1909 5899 5771 2173 110 13 0 chr15 9391312 9391613 -76304141 - AluSx SINE Alu -7 305 1 336 202 35 79 chr15 9392245 9392359 -76303395 - L2 LINE L2 -1 3271 3163 490 0 0 0 chr15 9392471 9392532 -76303222 - L1PA14 LINE L1 -1 6160 6100 1199 67 7 0 chr15 9392567 9392751 -76303003 + AluY SINE Alu 134 318 0 318 283 222 6 chr15 9393795 9393975 -76301779 + L2 LINE L2 2298 2516 -798 1414 159 71 0 chr15 9394041 9394280 -76301474 - AluJo SINE Alu -13 299 44 317 346 110 2 chr15 9394447 9394675 -76301079 + L2 LINE L2 2715 2970 -302 369 340 54 14 chr15 9394695 9394842 -76300912 + MIR SINE MIR 110 262 0 427 235 38 8 chr15 9394989 9395121 -76300633 + MER104 DNA Tc2 31 166 -14 821 179 31 131 chr15 9395618 9395976 -76299778 - MER33 DNA MER1_type -1 323 2 2462 83 0 3 chr15 9396287 9396601 -76299153 + AluSq SINE Alu 1 313 0 204 351 0 0 chr15 9396683 9396740 -76299014 + L2 LINE L2 3202 3258 -14 273 57 0 0 chr15 9396814 9396849 -76298905 + (A)n Simple_repeat Simple_repeat 1 35 0 588 224 40 0 chr15 9396849 9396974 -76298780 - MER5B DNA MER1_type -48 130 1 314 186 14 14 chr15 9398793 9398863 -76296891 - L2 LINE L2 -12 3260 3191 223 268 118 81 chr15 9400601 9400847 -76294907 - L2 LINE L2 -726 2588 2334 1271 202 49 22 chr15 9401411 9401678 -76294076 + AluJo SINE Alu 1 274 -38 239 91 0 23 chr15 9401686 9401730 -76294024 + (GAAA)n Simple_repeat Simple_repeat 3 45 0 668 188 28 6 chr15 9401758 9401934 -76293820 + GA-rich Low_complexity Low_complexity 1 180 0 1585 194 0 7 chr15 9402027 9402311 -76293443 + AluJb SINE Alu 1 282 -30 349 232 123 36 chr15 9403130 9403268 -76292486 + MIR SINE MIR 113 262 0 2272 33 33 4 chr15 9404818 9405125 -76290629 + AluY SINE Alu 1 315 0 462 264 56 8 chr15 9405127 9405252 -76290502 - L2 LINE L2 -3 3310 3180 1821 189 17 44 chr15 9406489 9406948 -76288806 + L1MB8 LINE L1 5723 6169 -9 2270 91 3 0 chr15 9407212 9407528 -76288226 + AluSp SINE Alu 1 317 0 1454 68 0 0 chr15 9407707 9407898 -76287856 + L1PA5 LINE L1 5964 6154 0 430 336 96 29 chr15 9408271 9408762 -76286992 + L2 LINE L2 1754 2277 -1037 422 300 140 42 chr15 9408765 9409167 -76286587 + L2 LINE L2 2594 3085 -187 1920 71 64 21 chr15 9409167 9409448 -76286306 - AluY SINE Alu -18 293 1 422 300 140 42 chr15 9409448 9409657 -76286097 + L2 LINE L2 3085 3272 0 612 261 0 0 chr15 9409740 9409882 -76285872 + Tigger3(Golem) DNA MER2_type 1 142 -2887 429 83 0 0 chr15 9409890 9409950 -76285804 + Tigger3(Golem) DNA MER2_type 2802 2861 -168 402 314 40 105 chr15 9410598 9410968 -76284786 - L1ME4a LINE L1 -224 5897 5552 183 337 58 12 chr15 9411415 9411501 -76284253 - L2 LINE L2 -960 2354 2265 2231 101 0 19 chr15 9413231 9413547 -76282207 - AluSg SINE Alu 0 310 1 282 256 103 0 chr15 9414459 9414537 -76281217 - MIR SINE MIR -170 92 7 188 277 0 46 chr15 9414701 9414766 -76280988 - MIR SINE MIR -181 81 20 997 240 27 15 chr15 9415570 9415872 -76279882 + L1MD3 LINE L1 6123 6344 0 2130 133 0 3 chr15 9416230 9416530 -76279224 + AluSx SINE Alu 1 299 -13 300 273 227 25 chr15 9416795 9417037 -76278717 - L3 LINE CR1 -6 1571 1281 646 317 182 14 chr15 9417102 9417841 -76277913 - L2 LINE L2 0 3313 2426 335 244 115 13 chr15 9417858 9418006 -76277748 - MIR SINE MIR -63 145 32 1462 280 118 37 chr15 9419097 9420108 -76275646 - HAL1 LINE L1 -7 2500 1408 429 282 141 5 chr15 9420525 9420731 -76275023 - HAL1 LINE L1 -2253 254 21 646 179 0 0 chr15 9421747 9421859 -76273895 - MER97b DNA MER1_type? -874 179 68 544 202 101 0 chr15 9421859 9422027 -76273727 - MER53 DNA DNA -4 185 1 1949 158 0 22 chr15 9422455 9422766 -76272988 + AluJo SINE Alu 9 312 0 340 214 97 45 chr15 9423008 9423162 -76272592 + MER103 DNA DNA 2 163 -3 192 97 0 0 chr15 9423344 9423375 -76272379 + (TG)n Simple_repeat Simple_repeat 2 32 0 2237 162 52 44 chr15 9423421 9423922 -76271832 - MLT1D LTR MaLR 0 505 1 230 178 22 0 chr15 9424307 9424352 -76271402 - MIR SINE MIR -92 170 125 382 343 66 11 chr15 9424730 9424911 -76270843 + MIR SINE MIR 22 212 -50 21 0 0 0 chr15 9425105 9425126 -76270628 + AT_rich Low_complexity Low_complexity 1 21 0 352 222 141 0 chr15 9427057 9427156 -76268598 + MIR SINE MIR 66 178 -84 1682 143 19 4 chr15 9428161 9428419 -76267335 - AluJb SINE Alu -10 302 41 297 264 142 26 chr15 9428748 9429038 -76266716 + L2 LINE L2 2776 3090 -182 8046 174 25 15 chr15 9429083 9430561 -76265193 - L1PB1 LINE L1 -3 6148 4686 2056 86 47 0 chr15 9430561 9430840 -76264914 - AluY SINE Alu -19 292 1 8046 174 25 15 chr15 9430840 9431087 -76264667 - L1PB1 LINE L1 -1465 4686 4443 198 103 0 0 chr15 9431087 9431116 -76264638 + (TA)n Simple_repeat Simple_repeat 1 29 0 8046 174 25 15 chr15 9431116 9432148 -76263606 - L1PB1 LINE L1 -1708 4443 3371 251 292 56 14 chr15 9432168 9432240 -76263514 + L2 LINE L2 3121 3195 -77 2205 100 13 17 chr15 9433509 9433809 -76261945 + AluSx SINE Alu 1 299 -13 385 262 132 32 chr15 9434023 9434393 -76261361 - L1ME4a LINE L1 -1 6120 5714 529 151 0 11 chr15 9434520 9434613 -76261141 + U13 snRNA snRNA 13 104 0 285 284 0 0 chr15 9434615 9434689 -76261065 + A-rich Low_complexity Low_complexity 1 74 0 251 360 93 0 chr15 9434698 9434784 -76260970 - MER91A DNA MER1_type -10 186 93 353 270 135 44 chr15 9435443 9435695 -76260059 - L1ME4a LINE L1 -1278 4868 4594 3687 161 54 32 chr15 9435761 9436594 -76259160 - L1MB1 LINE L1 -22 6146 5296 213 209 0 0 chr15 9437977 9438020 -76257734 + MIR SINE MIR 98 140 -68 2217 101 0 0 chr15 9440181 9440497 -76255257 + AluSq SINE Alu 1 316 0 214 317 0 0 chr15 9441000 9441060 -76254694 + CT-rich Low_complexity Low_complexity 1 60 0 184 341 91 28 chr15 9443703 9443879 -76251875 - L2 LINE L2 -568 2746 2560 1599 226 12 6 chr15 9445528 9445864 -76249890 + MER58B DNA MER1_type 2 339 -2 3023 95 91 34 chr15 9446369 9446865 -76248889 - MER1A DNA MER1_type 0 527 4 189 132 0 0 chr15 9447896 9447934 -76247820 + (A)n Simple_repeat Simple_repeat 1 38 0 617 225 95 18 chr15 9447972 9448141 -76247613 + MER5A DNA MER1_type 8 189 0 329 296 55 45 chr15 9449166 9449365 -76246389 - MIR SINE MIR -58 204 4 649 290 190 16 chr15 9451694 9452015 -76243739 - L2 LINE L2 0 3313 2937 242 301 181 30 chr15 9452089 9452255 -76243499 + MIR SINE MIR 72 262 0 254 342 61 30 chr15 9452602 9452865 -76242889 + L2 LINE L2 2659 2929 -385 182 313 90 75 chr15 9453012 9453146 -76242608 + L2 LINE L2 3124 3259 -13 431 215 185 31 chr15 9456805 9456935 -76238819 - MIR SINE MIR -2 260 111 1264 253 132 17 chr15 9458263 9458855 -76236899 + Charlie7 DNA MER1_type 64 723 -1889 283 225 123 22 chr15 9458872 9459010 -76236744 + Charlie7 DNA MER1_type 2458 2609 -3 26 0 0 0 chr15 9459353 9459379 -76236375 + AT_rich Low_complexity Low_complexity 1 26 0 248 399 51 33 chr15 9459849 9460278 -76235476 + L2 LINE L2 2243 2679 -635 * 692 276 121 76 chr15 9460263 9460726 -76235028 - L2 LINE L2 -1 3312 2829 1749 137 29 14 chr15 9460981 9461258 -76234496 - AluSx SINE Alu -8 304 24 2143 125 20 0 chr15 9463954 9464259 -76231495 + AluSp SINE Alu 2 312 -1 1190 223 94 26 chr15 9464490 9464956 -76230798 + L1MC5 LINE L1 7085 7582 -379 892 153 0 0 chr15 9465094 9465231 -76230523 + FLAM_C SINE Alu 1 137 -6 270 251 113 31 chr15 9465234 9465429 -76230325 + L1MC5 LINE L1 7703 7913 -48 294 342 68 6 chr15 9466016 9466112 -76229642 + MIR SINE MIR 62 173 -89 1576 188 10 50 chr15 9466112 9466415 -76229339 - AluJb SINE Alu -21 291 1 294 342 68 6 chr15 9466415 9466479 -76229275 + MIR SINE MIR 173 232 -30 23 24 0 24 chr15 9466569 9466588 -76229166 + AT_rich Low_complexity Low_complexity 1 19 -21 1462 204 17 24 chr15 9466588 9466877 -76228877 - AluJo SINE Alu -25 287 1 23 24 0 24 chr15 9466877 9466898 -76228856 + AT_rich Low_complexity Low_complexity 19 40 0 330 302 10 10 chr15 9467779 9467875 -76227879 - L2 LINE L2 0 3313 3218 4077 206 44 38 chr15 9468749 9469300 -76226454 - L1MB1 LINE L1 -6 5986 5440 2319 95 7 0 chr15 9469300 9469606 -76226148 - AluY SINE Alu -3 308 1 4077 206 44 38 chr15 9469606 9471436 -76224318 - L1MB1 LINE L1 -552 5440 3622 2069 101 0 7 chr15 9471436 9471712 -76224042 + AluSx SINE Alu 1 274 -38 4077 206 44 38 chr15 9471712 9473906 -76221848 - L1MB1 LINE L1 -2370 3622 1300 2191 123 0 25 chr15 9473909 9474226 -76221528 - AluSx SINE Alu -3 309 1 815 130 8 0 chr15 9474235 9474358 -76221396 - AluSg/x SINE Alu -5 307 184 429 282 141 5 chr15 9474587 9474793 -76220961 - HAL1 LINE L1 -2253 254 21 1208 132 0 6 chr15 9475627 9475801 -76219953 - AluSg SINE Alu -137 173 1 1225 283 47 0 chr15 9475810 9476280 -76219474 - L1MB1 LINE L1 -4706 1185 694 404 222 17 22 chr15 9476488 9476668 -76219086 + GA-rich Low_complexity Low_complexity 2 180 0 1108 301 89 52 chr15 9476782 9477430 -76218324 - L1MB1 LINE L1 -5217 674 3 1972 131 0 10 chr15 9478118 9478409 -76217345 + AluSx SINE Alu 1 288 -24 372 22 0 0 chr15 9480264 9480309 -76215445 + (TG)n Simple_repeat Simple_repeat 2 46 0 771 158 22 0 chr15 9480838 9480977 -76214777 + LTR25 LTR ERV1 1 142 -652 439 240 73 45 chr15 9481516 9481695 -76214059 - L3b LINE CR1 -159 1424 1241 903 202 146 38 chr15 9482848 9483061 -76212693 + MER46A DNA MER2_type 1 236 0 564 204 19 19 chr15 9484802 9484956 -76210798 + MLT1C LTR MaLR 347 467 0 257 233 50 0 chr15 9484968 9485028 -76210726 - MER5A DNA MER1_type -118 71 9 1316 265 145 38 chr15 9486774 9488696 -76207058 - L1M4 LINE L1 -844 5302 3174 336 203 13 0 chr15 9488732 9488811 -76206943 + MER116 DNA Mariner 1 80 0 5741 114 15 10 chr15 9489061 9489813 -76205941 + L1PA13 LINE L1 4637 5384 -779 903 121 0 0 chr15 9489813 9489953 -76205801 + (TA)n Simple_repeat Simple_repeat 2 141 0 5741 114 15 10 chr15 9489953 9490722 -76205032 + L1PA13 LINE L1 5384 6159 -4 348 64 0 0 chr15 9491297 9491344 -76204410 + (CA)n Simple_repeat Simple_repeat 2 48 0 410 245 37 86 chr15 9491535 9491698 -76204056 - MIR SINE MIR -31 231 77 377 388 7 0 chr15 9494332 9494484 -76201270 - MIR3 SINE MIR -37 171 19 1782 109 102 18 chr15 9494596 9494871 -76200883 + AluSx SINE Alu 1 298 -14 495 308 42 0 chr15 9494901 9495044 -76200710 + MIR SINE MIR 65 213 -49 321 155 0 0 chr15 9495668 9495726 -76200028 + (TG)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chr15 9496233 9496255 -76199499 + AT_rich Low_complexity Low_complexity 1 22 0 249 33 0 0 chr15 9497168 9497198 -76198556 + (T)n Simple_repeat Simple_repeat 1 30 0 198 310 92 0 chr15 9497613 9497700 -76198054 - MIR SINE MIR -71 191 97 30 69 0 0 chr15 9497864 9497922 -76197832 + AT_rich Low_complexity Low_complexity 1 58 0 297 320 52 0 chr15 9498289 9498386 -76197368 + MIR3 SINE MIR 97 198 -10 378 0 0 0 chr15 9498422 9498464 -76197290 + (CATA)n Simple_repeat Simple_repeat 2 43 0 2258 112 0 3 chr15 9498632 9498936 -76196818 + AluSq SINE Alu 1 303 -10 748 147 177 20 chr15 9500094 9500292 -76195462 - MSTA LTR MaLR -190 238 10 2328 101 3 3 chr15 9500586 9500892 -76194862 + AluSx SINE Alu 1 306 -6 2254 104 0 0 chr15 9501009 9501306 -76194448 - AluSq SINE Alu -16 297 1 409 272 22 100 chr15 9501524 9501755 -76193999 - MIR SINE MIR -12 250 30 221 277 18 54 chr15 9501801 9501913 -76193841 + L2 LINE L2 3005 3112 -201 239 54 27 0 chr15 9501978 9502015 -76193739 + (TTA)n Simple_repeat Simple_repeat 2 39 0 415 215 13 0 chr15 9502046 9502125 -76193629 + MER3 DNA MER1_type 1 80 -129 7701 18 2 2 chr15 9502144 9503375 -76192379 + L1PA3 LINE L1 4921 6151 -4 226 179 298 0 chr15 9503396 9503480 -76192274 + MER3 DNA MER1_type 101 209 0 251 237 34 17 chr15 9503480 9503539 -76192215 + L2 LINE L2 3254 3313 0 22 0 0 0 chr15 9503592 9503614 -76192140 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr15 9503796 9503820 -76191934 + (CA)n Simple_repeat Simple_repeat 1 24 0 297 0 0 0 chr15 9503889 9503922 -76191832 + (CA)n Simple_repeat Simple_repeat 2 34 0 2147 118 0 7 chr15 9504988 9505277 -76190477 + AluSx SINE Alu 1 287 -25 198 0 0 0 chr15 9508785 9508807 -76186947 + (TGGGGG)n Simple_repeat Simple_repeat 6 27 0 222 213 0 0 chr15 9508826 9508873 -76186881 + (TGG)n Simple_repeat Simple_repeat 2 48 0 241 276 35 35 chr15 9510258 9510345 -76185409 + L2 LINE L2 3137 3223 -49 511 350 40 5 chr15 9510882 9511105 -76184649 + MIR SINE MIR 22 252 -10 374 263 53 59 chr15 9511871 9512023 -76183731 + MIR SINE MIR 91 241 -21 422 320 164 34 chr15 9512196 9512881 -76182873 + L2 LINE L2 1732 2505 -809 265 243 110 37 chr15 9513109 9513245 -76182509 + L2 LINE L2 2829 2974 -298 573 283 23 12 chr15 9514407 9514580 -76181174 - MER5B DNA MER1_type -1 177 3 184 405 51 0 chr15 9516829 9516908 -76178846 - MIR SINE MIR -160 102 20 301 300 36 9 chr15 9517013 9517123 -76178631 - MIR SINE MIR -56 206 94 319 357 53 29 chr15 9517342 9517513 -76178241 + MIR3 SINE MIR 17 191 -17 2136 106 20 0 chr15 9517733 9518026 -76177728 - AluSc SINE Alu -10 299 1 21 36 0 0 chr15 9518247 9518275 -76177479 + AT_rich Low_complexity Low_complexity 1 28 0 2414 91 0 3 chr15 9519147 9519456 -76176298 + AluY SINE Alu 2 309 -2 1625 141 20 12 chr15 9520640 9520895 -76174859 + AluSx SINE Alu 35 291 -21 2049 71 0 87 chr15 9521082 9521418 -76174336 + AluY SINE Alu 1 309 0 180 0 0 0 chr15 9521418 9521438 -76174316 + (TTA)n Simple_repeat Simple_repeat 1 20 0 267 224 30 0 chr15 9521519 9521586 -76174168 + L1ME1 LINE L1 5044 5112 -1034 506 158 40 0 chr15 9521627 9521728 -76174026 + L1MA7 LINE L1 6182 6286 -5 1637 209 11 76 chr15 9521819 9522369 -76173385 + L1ME1 LINE L1 5204 5721 -445 1561 249 14 45 chr15 9522369 9522856 -76172898 + MLT2B1 LTR ERVL 1 472 -48 261 170 0 0 chr15 9522914 9522961 -76172793 + MLT2D LTR ERVL 368 414 0 1357 271 25 9 chr15 9522963 9523403 -76172351 + L1ME1 LINE L1 5719 6165 -1 242 180 148 0 chr15 9524300 9524361 -76171393 + MIR SINE MIR 95 164 -98 204 40 0 0 chr15 9524851 9524876 -76170878 + (A)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr15 9526409 9526438 -76169316 + AT_rich Low_complexity Low_complexity 1 29 0 240 35 0 0 chr15 9527922 9527951 -76167803 + (T)n Simple_repeat Simple_repeat 1 29 0 195 311 22 22 chr15 9529464 9529554 -76166200 - L2 LINE L2 -505 2809 2720 272 327 83 48 chr15 9529580 9529748 -76166006 - L2 LINE L2 -701 2613 2440 205 379 133 10 chr15 9529927 9530236 -76165518 - L2 LINE L2 -961 2353 2007 2336 111 30 16 chr15 9530519 9530889 -76164865 - THE1C LTR MaLR 0 375 1 291 234 26 0 chr15 9533084 9533161 -76162593 - MER116 DNA Mariner 0 80 2 183 239 0 0 chr15 9533486 9533532 -76162222 - L2 LINE L2 0 3313 3268 420 326 26 70 chr15 9533665 9533935 -76161819 + L2 LINE L2 2577 2834 -480 189 0 0 0 chr15 9534085 9534106 -76161648 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 264 30 0 0 chr15 9534105 9534138 -76161616 + (CA)n Simple_repeat Simple_repeat 1 33 0 508 289 83 72 chr15 9534208 9534568 -76161186 + L2 LINE L2 2907 3270 -2 303 250 11 34 chr15 9535375 9535463 -76160291 + MIR SINE MIR 176 261 -1 453 292 35 14 chr15 9536059 9536203 -76159551 - MIR SINE MIR -109 153 7 187 219 0 24 chr15 9536481 9536522 -76159232 + MIR SINE MIR 223 262 0 231 330 22 22 chr15 9537334 9537425 -76158329 + MIR SINE MIR 34 124 -84 251 277 0 15 chr15 9537697 9537762 -76157992 + GA-rich Low_complexity Low_complexity 5 68 0 238 286 57 0 chr15 9537868 9537938 -76157816 - Charlie8 DNA MER1_type 0 2417 2344 262 355 51 7 chr15 9538303 9538441 -76157313 - MIR3 SINE MIR -9 199 56 2388 86 0 0 chr15 9540040 9540342 -76155412 + AluYa5 SINE Alu 1 302 -9 663 172 8 39 chr15 9540367 9540495 -76155259 + AluJb SINE Alu 1 124 -188 2126 147 0 0 chr15 9540873 9541172 -76154582 + AluSq SINE Alu 1 299 -14 276 113 0 56 chr15 9541411 9541482 -76154272 + (TCC)n Simple_repeat Simple_repeat 2 68 0 326 105 0 18 chr15 9541544 9541601 -76154153 + (TCC)n Simple_repeat Simple_repeat 2 57 0 283 200 0 0 chr15 9541601 9541656 -76154098 - Alu SINE Alu -11 291 237 566 304 32 16 chr15 9542444 9542697 -76153057 - Charlie8 DNA MER1_type -2128 289 33 12513 33 7 6 chr15 9542775 9545079 -76150675 + L1PA4 LINE L1 3828 6155 0 232 304 114 0 chr15 9545414 9545493 -76150261 + MIR SINE MIR 164 251 -11 5184 133 28 44 chr15 9546013 9547081 -76148673 + L1MA8 LINE L1 5237 6287 -4 1036 303 65 35 chr15 9549007 9549439 -76146315 + L2 LINE L2 2497 2941 -373 775 209 29 17 chr15 9549452 9549624 -76146130 - MIR SINE MIR 0 262 89 1054 204 20 95 chr15 9549631 9549757 -76145997 + L1ME1 LINE L1 5716 5850 -316 1977 109 19 0 chr15 9549757 9550023 -76145731 - AluSq SINE Alu -9 304 34 1054 204 20 95 chr15 9550023 9550297 -76145457 + L1ME1 LINE L1 5850 6089 -77 278 292 77 73 chr15 9550379 9551737 -76144017 + L1ME LINE L1 4060 5417 -747 357 311 42 30 chr15 9551742 9551909 -76143845 + L1ME LINE L1 5478 5646 -516 229 368 0 0 chr15 9552654 9552760 -76142994 + (TGG)n Simple_repeat Simple_repeat 3 108 0 549 268 61 53 chr15 9554793 9555021 -76140733 - MIR SINE MIR -10 252 23 676 243 112 0 chr15 9555780 9555949 -76139805 + MER5A DNA MER1_type 2 189 0 22 70 0 0 chr15 9555986 9556029 -76139725 + AT_rich Low_complexity Low_complexity 1 43 0 1246 199 68 61 chr15 9556577 9556973 -76138781 + LTR52 LTR ERVL 8 406 -15 1363 181 99 11 chr15 9557013 9557366 -76138388 + L1MC2 LINE L1 5961 6344 0 710 141 0 94 chr15 9557612 9557655 -76138099 + MLT1A1 LTR MaLR 2 47 -318 2255 109 0 0 chr15 9557655 9557957 -76137797 + AluSx SINE Alu 1 302 -10 710 141 0 94 chr15 9557957 9558062 -76137692 + MLT1A1 LTR MaLR 47 136 -229 2232 205 50 5 chr15 9558064 9558508 -76137246 + MER21B LTR ERV1 1 464 -399 4034 111 79 91 chr15 9558515 9559901 -76135853 - pTR5 LTR ERV1 0 2438 743 1228 201 19 30 chr15 9559902 9560170 -76135584 + MER21A LTR ERV1 550 814 -117 2086 107 34 0 chr15 9560238 9560529 -76135225 + AluSq SINE Alu 1 301 -12 245 288 88 12 chr15 9560558 9560638 -76135116 - L2 LINE L2 -18 3254 3169 287 243 112 86 chr15 9560787 9561055 -76134699 + MLT1I LTR MaLR 21 295 -114 797 126 144 29 chr15 9561879 9562053 -76133701 + MER2 DNA MER2_type 2 195 -150 296 308 13 0 chr15 9562079 9562157 -76133597 + MER2 DNA MER2_type 267 345 0 787 160 0 80 chr15 9562775 9562950 -76132804 + FRAM SINE Alu 4 164 -2 724 277 73 40 chr15 9563841 9564105 -76131649 + L1ME3 LINE L1 5201 5455 -707 2591 61 0 6 chr15 9564105 9564418 -76131336 - AluY SINE Alu 0 311 1 724 277 73 40 chr15 9564418 9564850 -76130904 + L1ME3 LINE L1 5455 5909 -253 327 317 114 72 chr15 9565424 9565897 -76129857 + L1M4 LINE L1 3729 4221 -1925 339 25 0 0 chr15 9565966 9566006 -76129748 + (CA)n Simple_repeat Simple_repeat 1 40 0 261 0 0 0 chr15 9566283 9566312 -76129442 + (CA)n Simple_repeat Simple_repeat 1 29 0 484 186 167 19 chr15 9567141 9567297 -76128457 + MER53 DNA DNA 11 189 0 780 276 11 0 chr15 9567941 9568115 -76127639 - MER5B DNA MER1_type 0 178 3 279 71 0 0 chr15 9568387 9568429 -76127325 + (TAAAAA)n Simple_repeat Simple_repeat 2 43 0 191 294 15 59 chr15 9568953 9569021 -76126733 - L3b LINE CR1 -2 1581 1517 2321 86 0 3 chr15 9569748 9570050 -76125704 + AluY SINE Alu 1 301 -10 574 217 20 124 chr15 9570466 9570496 -76125258 - MIR SINE MIR -34 228 196 360 244 98 18 chr15 9570496 9570660 -76125094 - MER104 DNA MER2_type 0 180 4 574 217 20 124 chr15 9570660 9570698 -76125056 - MIR SINE MIR -66 196 156 1724 61 0 22 chr15 9570698 9570926 -76124828 - L1PA7 LINE L1 -3 6151 5929 574 217 20 124 chr15 9570926 9571105 -76124649 - MIR SINE MIR -106 156 6 216 329 13 0 chr15 9571922 9572001 -76123753 - MIR SINE MIR -2 260 181 312 301 78 20 chr15 9572162 9572315 -76123439 + L1ME LINE L1 5658 5819 -302 351 203 0 14 chr15 9572384 9572458 -76123296 - Tigger5 DNA MER2_type 0 2323 2251 270 170 0 19 chr15 9572428 9572481 -76123273 - Tigger5 DNA MER2_type -2270 53 2 * 728 284 36 4 chr15 9572626 9572851 -76122903 + MIR SINE MIR 2 233 -29 2464 73 0 0 chr15 9572900 9573202 -76122552 - AluY SINE Alu -9 302 1 3379 245 106 45 chr15 9573203 9574189 -76121565 + L2 LINE L2 1364 2457 -857 1669 150 4 26 chr15 9574189 9574462 -76121292 + AluJo SINE Alu 29 295 -17 3379 245 106 45 chr15 9574462 9574839 -76120915 + L2 LINE L2 2457 2810 -504 1302 221 129 18 chr15 9574839 9575282 -76120472 - Charlie4a DNA MER1_type 0 508 17 768 266 101 59 chr15 9575343 9575627 -76120127 + L2 LINE L2 2872 3181 -132 2123 171 58 24 chr15 9575627 9576041 -76119713 + MSTC LTR MaLR 1 428 0 768 266 101 59 chr15 9576041 9576180 -76119574 + L2 LINE L2 3181 3313 0 507 289 37 74 chr15 9576416 9576658 -76119096 + MIR SINE MIR 8 240 -22 21 0 0 0 chr15 9576784 9576805 -76118949 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr15 9576985 9577016 -76118738 + AT_rich Low_complexity Low_complexity 1 31 0 201 250 0 0 chr15 9577581 9577625 -76118129 - MER5A DNA MER1_type -111 78 35 992 263 76 30 chr15 9577651 9577816 -76117938 - Charlie2 DNA MER1_type 0 2862 2706 1976 135 10 16 chr15 9577816 9578127 -76117627 + AluSx SINE Alu 1 309 -3 992 263 76 30 chr15 9578127 9578486 -76117268 - Charlie2 DNA MER1_type -156 2706 2314 310 255 47 9 chr15 9578537 9578643 -76117111 - Charlie2 DNA MER1_type -2443 339 230 276 274 0 32 chr15 9578687 9578782 -76116972 - Charlie2 DNA MER1_type -2657 125 34 237 211 35 18 chr15 9578828 9578885 -76116869 + MER5A DNA MER1_type 49 106 -83 286 327 91 14 chr15 9579708 9579928 -76115826 + L2 LINE L2 2589 2825 -489 221 288 41 41 chr15 9580317 9580390 -76115364 + L2 LINE L2 3239 3311 -2 468 280 163 47 chr15 9580895 9581281 -76114473 + L1M4 LINE L1 3730 4160 -1986 1201 162 51 0 chr15 9581407 9581641 -76114113 + L1MB2 LINE L1 5308 5553 -630 652 176 94 18 chr15 9581641 9581811 -76113943 + L1MB2 LINE L1 5987 6169 -2 294 115 0 0 chr15 9581819 9581871 -76113883 + L1MB4 LINE L1 6128 6179 -1 325 254 113 11 chr15 9581891 9582068 -76113686 + L1M4 LINE L1 4215 4409 -1737 263 281 68 25 chr15 9582147 9582382 -76113372 + L1M4 LINE L1 4518 4762 -1384 361 328 16 16 chr15 9582677 9582799 -76112955 - MIR SINE MIR -139 123 2 843 211 91 15 chr15 9582881 9583080 -76112674 + Tigger5 DNA MER2_type 1 214 -2109 1961 179 36 8 chr15 9583080 9583472 -76112282 + MER57A LTR ERV1 1 403 0 2877 151 26 18 chr15 9583472 9583534 -76112220 + MER57A-int LTR ERV1 1 61 -7476 5112 208 60 83 chr15 9583534 9585330 -76110424 + MER52A LTR ERV1 1 1753 -2 2877 151 26 18 chr15 9585330 9585769 -76109985 + MER57A-int LTR ERV1 61 506 -7031 356 146 0 10 chr15 9585770 9585840 -76109914 - AluS SINE Alu -242 60 7 26 82 0 0 chr15 9585929 9585990 -76109764 + AT_rich Low_complexity Low_complexity 1 61 0 3919 141 53 9 chr15 9586061 9586977 -76108777 + MER57A-int LTR ERV1 494 1451 -4495 2144 168 38 2 chr15 9586968 9587366 -76108388 + MER57A-int LTR ERV1 2218 2629 -4908 * 1178 151 0 10 chr15 9587358 9587557 -76108197 + MER57A-int LTR ERV1 2777 2973 -4564 * 3650 133 31 69 chr15 9587557 9588449 -76107305 + MER57A-int LTR ERV1 2533 3485 -2778 2039 125 58 58 chr15 9588449 9588810 -76106944 - THE1B LTR MaLR -3 361 1 3650 133 31 69 chr15 9588810 9588983 -76106771 + MER57A-int LTR ERV1 3485 3663 -2600 531 83 0 0 chr15 9589025 9589097 -76106657 + MER57A-int LTR ERV1 7078 7149 -388 658 123 23 31 chr15 9589097 9589227 -76106527 + LTR54B LTR ERV1 3 131 -367 1245 74 157 26 chr15 9589227 9589456 -76106298 + MER57A-int LTR ERV1 7279 7537 0 2162 182 8 2 chr15 9589456 9589857 -76105897 + MER57A LTR ERV1 1 403 0 1515 135 39 0 chr15 9589859 9590119 -76105635 + Tigger5 DNA MER2_type 2054 2323 0 260 280 70 10 chr15 9590275 9590475 -76105279 + L1MC4a LINE L1 5264 5475 -2333 297 260 116 62 chr15 9590568 9590860 -76104894 + L1MC4a LINE L1 5617 5924 -1884 224 294 20 0 chr15 9591213 9591264 -76104490 + MIR SINE MIR 19 70 -138 3948 132 22 12 chr15 9591265 9591941 -76103813 + MER50 LTR ERV1 1 683 -51 308 243 54 14 chr15 9591971 9592045 -76103709 + MIR3 SINE MIR 108 184 -24 25 0 0 0 chr15 9592132 9592157 -76103597 + AT_rich Low_complexity Low_complexity 1 25 0 234 0 0 0 chr15 9592417 9592443 -76103311 + (CAATT)n Simple_repeat Simple_repeat 1 26 0 2475 186 9 23 chr15 9592493 9593064 -76102690 + LTR27 LTR ERV1 3 627 -141 1653 197 6 24 chr15 9593068 9593398 -76102356 + LTR28 LTR ERV1 697 1020 0 496 246 71 58 chr15 9593398 9593622 -76102132 - MER21B LTR ERV1 -215 648 422 210 175 0 25 chr15 9593744 9593784 -76101970 + T-rich Low_complexity Low_complexity 5 43 0 838 229 18 31 chr15 9593784 9594007 -76101747 - MER21B LTR ERV1 -546 317 98 463 177 0 0 chr15 9594059 9594138 -76101616 - MER21B LTR ERV1 -773 90 12 2736 108 66 38 chr15 9594811 9595312 -76100442 + MER4B LTR ERV1 1 515 -95 304 143 26 52 chr15 9595324 9595401 -76100353 + L1ME3A LINE L1 4753 4827 -1319 23 33 0 0 chr15 9595547 9595577 -76100177 + AT_rich Low_complexity Low_complexity 1 30 0 2360 243 88 38 chr15 9595733 9596143 -76099611 + L1ME3A LINE L1 5259 5647 -523 2410 153 8 2 chr15 9596143 9596542 -76099212 - MER57A LTR ERV1 -2 401 1 2360 243 88 38 chr15 9596542 9596766 -76098988 + L1ME3A LINE L1 5647 5858 -312 1963 132 7 7 chr15 9596766 9597055 -76098699 + AluSx SINE Alu 1 289 -23 2360 243 88 38 chr15 9597055 9597280 -76098474 + L1ME3A LINE L1 5858 6162 -8 333 312 123 13 chr15 9597319 9597473 -76098281 - MIR SINE MIR -55 207 37 231 256 8 34 chr15 9597854 9597971 -76097783 + (TGG)n Simple_repeat Simple_repeat 1 114 0 3854 166 12 15 chr15 9598632 9599384 -76096370 - L1MA7 LINE L1 -4 6287 5538 266 217 58 0 chr15 9599597 9599666 -76096088 + MIR3 SINE MIR 130 202 -6 192 163 0 0 chr15 9601290 9601333 -76094421 + (TA)n Simple_repeat Simple_repeat 2 44 0 334 259 54 18 chr15 9602019 9602131 -76093623 + L1ME LINE L1 5571 5686 -435 2358 62 0 3 chr15 9602211 9602500 -76093254 + AluY SINE Alu 1 288 -23 858 287 79 24 chr15 9602989 9603483 -76092271 + LTR33 LTR ERVL 1 521 0 24 0 0 0 chr15 9605201 9605225 -76090529 + AT_rich Low_complexity Low_complexity 1 24 0 562 281 118 6 chr15 9605737 9605915 -76089839 - MIR SINE MIR -49 213 16 2442 84 3 0 chr15 9609865 9610176 -76085578 - AluSp SINE Alu -1 312 1 325 233 92 25 chr15 9610503 9610623 -76085131 - MIR SINE MIR -65 197 70 808 274 24 28 chr15 9610625 9610873 -76084881 - MIR SINE MIR -3 259 13 185 0 40 0 chr15 9611024 9611049 -76084705 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 201 39 0 0 chr15 9611943 9611969 -76083785 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 761 239 58 40 chr15 9612058 9612284 -76083470 - MER8 DNA MER2_type -8 231 2 2227 116 3 3 chr15 9612512 9612815 -76082939 + AluSx SINE Alu 1 303 -9 1814 168 3 3 chr15 9613604 9613902 -76081852 - AluJb SINE Alu -14 298 1 206 333 0 14 chr15 9613910 9613979 -76081775 - MIR SINE MIR -60 148 81 378 269 63 29 chr15 9614577 9614605 -76081149 + MIR SINE MIR 2 28 -234 2388 92 0 16 chr15 9614605 9614922 -76080832 + AluSx SINE Alu 1 312 0 378 269 63 29 chr15 9614922 9615068 -76080686 + MIR SINE MIR 28 182 -80 1757 146 7 27 chr15 9616911 9617206 -76078548 - AluJb SINE Alu -23 289 1 30 0 0 0 chr15 9617211 9617241 -76078513 + AT_rich Low_complexity Low_complexity 1 30 0 2626 77 0 3 chr15 9617241 9617590 -76078164 - L1PA5 LINE L1 -5 6149 5802 1989 33 24 0 chr15 9617590 9617895 -76077859 + L1P2 LINE L1 5218 5527 -628 377 286 93 28 chr15 9617987 9618169 -76077585 + MIR SINE MIR 69 262 0 2096 122 0 3 chr15 9619213 9619507 -76076247 + AluSx SINE Alu 1 293 -19 230 177 0 81 chr15 9620279 9620341 -76075413 + LTR36 LTR ERV1 139 195 -416 976 119 8 0 chr15 9620344 9620478 -76075276 + AluSq/x SINE Alu 1 135 -177 2333 94 0 0 chr15 9620478 9620777 -76074977 + AluSp SINE Alu 1 299 -14 345 271 70 34 chr15 9620777 9621154 -76074600 + LTR38B LTR ERV1 209 603 -8 487 159 44 0 chr15 9621183 9621296 -76074458 - L1MA4 LINE L1 -4 6296 6179 321 313 16 28 chr15 9621323 9621505 -76074249 + LTR67 LTR ERVL 327 506 -51 345 24 0 0 chr15 9621895 9621937 -76073817 + (TG)n Simple_repeat Simple_repeat 2 43 0 1579 137 16 4 chr15 9621937 9621977 -76073777 - AluSx SINE Alu -28 284 246 342 0 0 0 chr15 9621977 9622015 -76073739 + (TG)n Simple_repeat Simple_repeat 2 39 0 1579 137 16 4 chr15 9622015 9622223 -76073531 - AluSx SINE Alu -66 246 33 273 194 9 74 chr15 9622704 9622812 -76072942 + MER53 DNA DNA 1 101 -88 * 415 117 0 53 chr15 9622723 9622817 -76072937 - MER53 DNA DNA -10 179 91 296 198 33 77 chr15 9622997 9623088 -76072666 + MER21B LTR ERV1 3 89 -774 1494 224 170 34 chr15 9623266 9623548 -76072206 + MER21B LTR ERV1 133 375 -488 3938 138 14 5 chr15 9623548 9624177 -76071577 + MER41B LTR ERV1 1 635 0 1494 224 170 34 chr15 9624177 9624483 -76071271 + MER21B LTR ERV1 375 801 -62 780 107 38 8 chr15 9624992 9625123 -76070631 - L1PB1 LINE L1 -1 6150 6016 310 156 28 18 chr15 9625379 9625488 -76070266 + (TA)n Simple_repeat Simple_repeat 1 110 0 290 229 66 93 chr15 9625527 9625812 -76069942 + L1ME4a LINE L1 5575 5854 -318 2336 100 0 7 chr15 9625849 9626159 -76069595 + AluY SINE Alu 1 308 -3 357 243 140 0 chr15 9626236 9626372 -76069382 + L1ME4a LINE L1 5965 6119 -2 2084 125 10 6 chr15 9627146 9627457 -76068297 + AluSx SINE Alu 1 312 0 1376 61 10 10 chr15 9627483 9627680 -76068074 + L1PB1 LINE L1 5596 5792 -359 318 180 0 0 chr15 9627680 9627741 -76068013 + (TA)n Simple_repeat Simple_repeat 2 62 0 2582 90 14 0 chr15 9627741 9628106 -76067648 + L1PB1 LINE L1 5782 6151 0 21 0 0 0 chr15 9628106 9628127 -76067627 + AT_rich Low_complexity Low_complexity 1 21 0 195 302 103 26 chr15 9629236 9629352 -76066402 + L2 LINE L2 3148 3272 0 799 288 91 5 chr15 9629464 9629683 -76066071 - MIR SINE MIR -19 243 6 493 250 72 7 chr15 9629740 9629892 -76065862 - MER103 DNA DNA -2 164 3 183 196 71 36 chr15 9630716 9630772 -76064982 - MIR SINE MIR -93 169 112 282 356 60 7 chr15 9633767 9633916 -76061838 - MIR3 SINE MIR -5 203 47 448 302 22 7 chr15 9633999 9634138 -76061616 + MIR SINE MIR 17 157 -105 2151 133 7 0 chr15 9634954 9635262 -76060492 + AluSx SINE Alu 1 310 -2 1395 193 95 8 chr15 9635297 9635561 -76060193 - AluJo SINE Alu -25 287 1 22 35 0 0 chr15 9635792 9635821 -76059933 + AT_rich Low_complexity Low_complexity 1 29 0 1529 154 44 50 chr15 9636492 9636790 -76058964 - AluJb SINE Alu -16 296 1 225 146 42 0 chr15 9636823 9636871 -76058883 - L1MDb LINE L1 -5033 1376 1327 1974 131 0 33 chr15 9636900 9637206 -76058548 + AluJb SINE Alu 1 296 -16 381 229 74 56 chr15 9637207 9637502 -76058252 + L1M4 LINE L1 1539 2007 -4818 1753 216 38 24 chr15 9637540 9638087 -76057667 + L1M4 LINE L1 2878 3432 -3212 691 291 56 35 chr15 9638176 9638571 -76057183 + HAL1 LINE L1 480 882 -1625 453 269 58 51 chr15 9638617 9638874 -76056880 + LTR33 LTR ERVL 212 470 -51 1802 124 0 78 chr15 9638877 9639184 -76056570 + AluJb SINE Alu 3 285 -27 1110 306 83 10 chr15 9639267 9639771 -76055983 - ERVL LTR ERVL -2901 2863 2323 629 318 29 4 chr15 9639775 9640014 -76055740 + ERVL LTR ERVL 4754 4998 -766 401 196 81 82 chr15 9640320 9640537 -76055217 + MER58B DNA MER1_type 1 341 0 298 229 90 133 chr15 9640538 9640839 -76054915 + L1ME4a LINE L1 5590 5877 -244 1133 95 73 6 chr15 9641250 9641429 -76054325 + MER30 DNA MER1_type 2 192 -38 295 364 41 26 chr15 9641625 9641820 -76053934 + L2 LINE L2 2715 2912 -402 268 293 0 27 chr15 9642388 9642463 -76053291 + CT-rich Low_complexity Low_complexity 4 76 0 271 281 75 69 chr15 9642846 9643006 -76052748 + L2 LINE L2 3151 3311 -2 874 244 57 18 chr15 9643116 9643345 -76052409 + MIR SINE MIR 23 260 -2 289 316 75 8 chr15 9645323 9645456 -76050298 + ERVL LTR ERVL 5176 5317 -447 303 71 0 0 chr15 9646166 9646208 -76049546 + (CA)n Simple_repeat Simple_repeat 1 42 0 231 306 166 25 chr15 9646374 9646531 -76049223 + L2 LINE L2 1930 2108 -1206 659 175 169 42 chr15 9646538 9646727 -76049027 - MER20 DNA MER1_type -6 213 1 1677 287 123 13 chr15 9646727 9647634 -76048120 + L2 LINE L2 2110 3108 -205 21 0 0 0 chr15 9649060 9649081 -76046673 + AT_rich Low_complexity Low_complexity 1 21 0 3022 98 22 2 chr15 9649288 9649735 -76046019 + L1PA14 LINE L1 5706 6161 0 246 304 14 0 chr15 9649828 9649897 -76045857 + L2 LINE L2 3203 3272 0 414 331 77 17 chr15 9649944 9650231 -76045523 + L1ME4a LINE L1 5564 5867 -254 226 239 131 8 chr15 9650279 9650409 -76045345 + L1ME4a LINE L1 5964 6109 -12 21 0 0 0 chr15 9651102 9651123 -76044631 + AT_rich Low_complexity Low_complexity 1 21 0 3098 184 79 10 chr15 9651138 9651857 -76043897 + L1MB7 LINE L1 5416 6184 0 369 275 137 47 chr15 9651967 9652178 -76043576 + L1ME4a LINE L1 5669 5898 -223 23 0 0 0 chr15 9652178 9652201 -76043553 + AT_rich Low_complexity Low_complexity 1 23 0 240 292 135 22 chr15 9654927 9655112 -76040642 - L2 LINE L2 -2 3311 3106 231 36 0 0 chr15 9655377 9655405 -76040349 + (CA)n Simple_repeat Simple_repeat 1 28 0 1425 149 103 0 chr15 9656228 9656470 -76039284 + MER57A LTR ERV1 135 401 -2 206 299 175 26 chr15 9656677 9656831 -76038923 + MIR SINE MIR 86 262 0 350 299 31 67 chr15 9659818 9660012 -76035742 - MIR SINE MIR -45 217 31 2046 125 7 13 chr15 9661428 9661733 -76034021 - AluSc SINE Alu -6 303 1 483 222 170 0 chr15 9662791 9662944 -76032810 - MIR SINE MIR -6 256 78 288 303 243 7 chr15 9662949 9663233 -76032521 + L2 LINE L2 2409 2759 -555 630 311 106 9 chr15 9663675 9664167 -76031587 - MLT1K LTR MaLR -4 584 11 341 154 0 46 chr15 9664393 9664458 -76031296 - MER5B DNA MER1_type -108 70 9 336 258 195 32 chr15 9665047 9665237 -76030517 + MIR SINE MIR 41 261 -1 1054 121 7 0 chr15 9665464 9665604 -76030150 + AluSq/x SINE Alu 5 145 -168 213 250 15 44 chr15 9666952 9667020 -76028734 - L2 LINE L2 -22 3250 3185 210 296 21 7 chr15 9667822 9667910 -76027844 + GA-rich Low_complexity Low_complexity 2 144 0 2969 132 67 89 chr15 9668436 9669047 -76026707 - LTR12 LTR ERV1 -136 578 1 357 248 165 0 chr15 9669487 9669620 -76026134 - MIR SINE MIR -81 181 27 1994 96 0 116 chr15 9669690 9670034 -76025720 - AluY SINE Alu -7 304 1 344 262 105 5 chr15 9670278 9670488 -76025266 + L1ME4a LINE L1 5639 5869 -252 25 0 0 0 chr15 9670700 9670725 -76025029 + AT_rich Low_complexity Low_complexity 1 25 0 338 316 32 25 chr15 9670755 9670924 -76024830 + MIR SINE MIR 42 210 -52 2074 106 26 23 chr15 9670950 9671252 -76024502 + AluSx SINE Alu 1 303 -9 332 275 22 51 chr15 9673141 9673279 -76022475 + MIR3 SINE MIR 6 139 -69 344 301 116 14 chr15 9673351 9673497 -76022257 + MIR3 SINE MIR 5 165 -43 1749 165 34 3 chr15 9673854 9674151 -76021603 - AluJo SINE Alu -6 306 1 2264 112 0 0 chr15 9674622 9674917 -76020837 + AluSx SINE Alu 1 295 -17 475 225 7 106 chr15 9675785 9675936 -76019818 + L2 LINE L2 3173 3308 -5 2437 88 0 0 chr15 9676709 9677017 -76018737 + AluSx SINE Alu 2 309 -3 513 319 35 26 chr15 9677751 9677977 -76017777 + MIR SINE MIR 9 236 -26 2050 108 17 3 chr15 9679217 9679514 -76016240 + AluY SINE Alu 1 301 -10 27 29 0 0 chr15 9679906 9679940 -76015814 + AT_rich Low_complexity Low_complexity 1 34 0 387 0 0 0 chr15 9680096 9680139 -76015615 + (CA)n Simple_repeat Simple_repeat 2 44 0 226 294 160 112 chr15 9680432 9680701 -76015053 - L2 LINE L2 -75 3197 2916 431 274 99 62 chr15 9680751 9681313 -76014441 - L1MC/D LINE L1 -743 5403 4887 457 481 18 53 chr15 9681360 9681697 -76014057 - LTR16A LTR ERVL -5 445 121 316 289 35 14 chr15 9681755 9681897 -76013857 - LTR16A1 LTR ERVL -312 145 1 591 297 179 14 chr15 9681961 9682396 -76013358 - L3 LINE CR1 -393 1184 678 252 355 47 9 chr15 9683335 9683442 -76012312 - L2 LINE L2 0 3272 3162 2512 58 0 7 chr15 9684291 9684599 -76011155 + AluY SINE Alu 1 306 -5 910 150 0 0 chr15 9685914 9686054 -76009700 - AluSg/x SINE Alu -14 296 157 2024 115 27 3 chr15 9686837 9687132 -76008622 + AluSg SINE Alu 9 310 0 24 32 0 0 chr15 9687289 9687320 -76008434 + AT_rich Low_complexity Low_complexity 1 31 0 635 268 134 29 chr15 9688333 9688646 -76007108 + LTR33 LTR ERVL 13 358 -163 703 264 25 15 chr15 9689303 9689500 -76006254 - L1MC/D LINE L1 -1997 5811 5613 708 363 31 35 chr15 9742454 9742936 -75952818 - L3 LINE CR1 -9 1568 1089 238 264 0 0 chr15 9743155 9743208 -75952546 - LTR67 LTR ERVL -15 542 490 351 123 71 42 chr15 9746944 9747046 -75948708 + FRAM/FAM SINE Alu 26 65 -101 2089 84 44 3 chr15 9748151 9748448 -75947306 - AluSg SINE Alu -1 309 1 39 38 0 0 chr15 9748731 9748784 -75946970 + AT_rich Low_complexity Low_complexity 1 53 0 1370 133 62 8 chr15 9748790 9749031 -75946723 + MER21A LTR ERV1 11 264 -667 2456 138 45 96 chr15 9749036 9749567 -75946187 + MER21A LTR ERV1 376 879 -52 1134 135 157 26 chr15 9749741 9749971 -75945783 - AluJo SINE Alu 0 312 53 1934 132 7 0 chr15 9750019 9750343 -75945411 + AluSx SINE Alu 1 326 0 300 341 99 2 chr15 9750961 9751123 -75944631 + MIR SINE MIR 38 213 -49 1658 177 0 13 chr15 9751126 9751431 -75944323 + AluJb SINE Alu 1 301 -11 186 225 25 0 chr15 9751591 9751631 -75944123 - MIR SINE MIR -126 136 96 2386 65 0 0 chr15 9753000 9753308 -75942446 + AluY SINE Alu 1 308 -3 234 246 0 29 chr15 9753656 9753725 -75942029 + L2 LINE L2 2998 3064 -208 285 254 0 0 chr15 9754724 9754787 -75940967 + L2 LINE L2 3246 3308 -5 2501 125 71 24 chr15 9755191 9755600 -75940154 + MSTA LTR MaLR 1 428 0 1925 117 0 0 chr15 9755888 9756137 -75939617 + AluSq SINE Alu 1 249 -64 1563 197 0 3 chr15 9756261 9756561 -75939193 + AluSx SINE Alu 10 308 -4 2328 73 21 0 chr15 9757974 9758289 -75937465 + AluSq SINE Alu 1 321 0 209 301 129 0 chr15 9758549 9758642 -75937112 + L3 LINE CR1 1404 1508 -69 881 143 52 45 chr15 9759360 9759514 -75936240 - AluJb SINE Alu -18 294 140 1019 94 0 0 chr15 9759798 9759926 -75935828 + AluSg SINE Alu 6 133 -177 2267 119 0 0 chr15 9759926 9760229 -75935525 + AluSg SINE Alu 1 303 -7 942 225 38 4 chr15 9760689 9760925 -75934829 - MIR SINE MIR -1 261 18 445 233 29 0 chr15 9761111 9761214 -75934540 + MIR SINE MIR 38 143 -119 2171 123 0 10 chr15 9761423 9761724 -75934030 + AluSq SINE Alu 1 298 -15 287 237 284 21 chr15 9762284 9762474 -75933280 + MIR SINE MIR 23 262 0 490 330 82 33 chr15 9763197 9763372 -75932382 - L2 LINE L2 -607 2707 2542 1765 167 26 16 chr15 9763372 9763678 -75932076 + AluSx SINE Alu 1 309 -3 490 330 82 33 chr15 9763678 9763987 -75931767 - L2 LINE L2 -772 2542 2199 1151 257 63 6 chr15 9765651 9765982 -75929772 + LTR33 LTR ERVL 5 354 -167 1034 58 0 0 chr15 9766104 9766225 -75929529 + AluY SINE Alu 1 121 -190 2208 114 0 3 chr15 9766937 9767236 -75928518 + AluSx SINE Alu 1 298 -14 239 261 0 11 chr15 9767375 9767467 -75928287 + (CATATA)n Simple_repeat Simple_repeat 4 94 0 1505 182 56 7 chr15 9767481 9767767 -75927987 + AluJo SINE Alu 1 300 -12 363 309 109 9 chr15 9767797 9768041 -75927713 + L2 LINE L2 2784 3055 -217 2314 85 0 3 chr15 9768093 9768386 -75927368 - AluSx SINE Alu -15 297 6 313 215 87 74 chr15 9768469 9768618 -75927136 + L2 LINE L2 3163 3313 0 206 299 0 46 chr15 9770130 9770217 -75925537 - MIR SINE MIR -110 152 70 2454 81 0 0 chr15 9772079 9772375 -75923379 - AluY SINE Alu -15 296 1 205 254 29 22 chr15 9773515 9773599 -75922155 - MIR SINE MIR -62 146 90 415 175 58 19 chr15 9774351 9774454 -75921300 - MIR SINE MIR -67 141 35 2250 91 0 24 chr15 9774916 9775212 -75920542 - AluSg SINE Alu -21 289 1 1065 106 0 0 chr15 9775519 9775660 -75920094 + AluSg/x SINE Alu 164 304 -8 645 176 14 179 chr15 9775664 9775954 -75919800 - MER33 DNA MER1_type -28 296 55 4052 225 104 49 chr15 9776017 9776573 -75919181 + L1 LINE L1 1841 2365 -3781 2547 66 0 3 chr15 9776573 9776877 -75918877 + AluY SINE Alu 1 303 -8 4052 225 104 49 chr15 9776877 9776957 -75918797 + L1 LINE L1 2365 2439 -3707 2314 113 0 3 chr15 9776957 9777259 -75918495 + AluSx SINE Alu 1 301 -11 4052 225 104 49 chr15 9777259 9777643 -75918111 + L1 LINE L1 2439 2800 -3346 2259 109 3 0 chr15 9777643 9777946 -75917808 + AluSp SINE Alu 1 304 -9 4052 225 104 49 chr15 9777946 9778034 -75917720 + L1 LINE L1 2800 2882 -3264 7457 44 3 3 chr15 9778034 9779215 -75916539 + L1PA5 LINE L1 4974 6154 0 4052 225 104 49 chr15 9779215 9779632 -75916122 + L1 LINE L1 2882 3274 -2872 2025 134 3 14 chr15 9779632 9779922 -75915832 + AluJb SINE Alu 3 289 -23 546 57 0 0 chr15 9779925 9779995 -75915759 + (GA)n Simple_repeat Simple_repeat 1 70 0 4052 225 104 49 chr15 9779995 9780126 -75915628 + L1 LINE L1 3275 3605 -2541 286 215 43 43 chr15 9781266 9781359 -75914395 - MIR SINE MIR -121 141 49 231 152 0 0 chr15 9782355 9782401 -75913353 + CT-rich Low_complexity Low_complexity 1 46 0 378 0 0 0 chr15 9782820 9782862 -75912892 + (TG)n Simple_repeat Simple_repeat 1 42 0 433 88 25 0 chr15 9782864 9782944 -75912810 + (GA)n Simple_repeat Simple_repeat 2 83 0 757 218 35 0 chr15 9788606 9788780 -75906974 + MIR SINE MIR 83 262 0 307 286 78 48 chr15 9790876 9791082 -75904672 + L2 LINE L2 3098 3309 -4 495 87 0 0 chr15 9791969 9792038 -75903716 + (TTTTC)n Simple_repeat Simple_repeat 1 69 0 210 179 30 15 chr15 9792051 9792118 -75903636 + CT-rich Low_complexity Low_complexity 3 70 0 22 0 0 0 chr15 9792750 9792772 -75902982 + AT_rich Low_complexity Low_complexity 1 22 0 530 203 64 119 chr15 9792820 9792850 -75902904 + MER102a DNA MER1_type 94 124 -1293 2097 133 0 3 chr15 9792850 9793144 -75902610 - AluSx SINE Alu -11 301 9 530 203 64 119 chr15 9793144 9793364 -75902390 + MER102a DNA MER1_type 124 330 0 1718 173 4 0 chr15 9793523 9793789 -75901965 - AluJb SINE Alu -44 268 2 2471 64 0 3 chr15 9794420 9794715 -75901039 + AluY SINE Alu 1 294 -17 304 189 0 0 chr15 9795023 9795076 -75900678 + MSTC LTR MaLR 79 131 -243 1653 165 146 19 chr15 9795096 9795459 -75900295 - MSTA LTR MaLR -19 409 1 733 195 102 29 chr15 9795470 9795675 -75900079 + MSTC LTR MaLR 179 398 -30 254 186 0 0 chr15 9795738 9795781 -75899973 + MSTC LTR MaLR 354 396 0 907 236 10 5 chr15 9795836 9796031 -75899723 - MER20 DNA MER1_type -2 217 22 2479 64 14 0 chr15 9797659 9797954 -75897800 + AluSp SINE Alu 1 299 -14 26 50 0 0 chr15 9798310 9798350 -75897404 + AT_rich Low_complexity Low_complexity 1 40 0 2253 114 3 13 chr15 9798366 9798681 -75897073 + AluSp SINE Alu 1 312 -1 2266 112 0 0 chr15 9798810 9799104 -75896650 + AluSx SINE Alu 1 294 -18 1434 221 89 35 chr15 9800022 9800448 -75895306 + LTR40c LTR ERVL 9 457 -8 560 262 77 27 chr15 9801411 9801632 -75894122 - LTR33 LTR ERVL -269 252 21 261 0 0 0 chr15 9801664 9801693 -75894061 + (CACAG)n Simple_repeat Simple_repeat 1 29 0 288 127 0 0 chr15 9801723 9801778 -75893976 + (TA)n Simple_repeat Simple_repeat 1 55 0 488 158 12 12 chr15 9801828 9801910 -75893844 + LTR41 LTR ERVL 99 180 -593 2280 152 29 31 chr15 9802333 9802786 -75892968 + L1MB4 LINE L1 5715 6166 -14 229 129 0 0 chr15 9802921 9802952 -75892802 + AluSx SINE Alu 1 31 -271 7191 117 23 46 chr15 9803052 9803805 -75891949 + L1MA1 LINE L1 4044 4813 -1489 2034 148 10 3 chr15 9803805 9804110 -75891644 + AluSx SINE Alu 1 307 -5 7191 117 23 46 chr15 9804110 9804669 -75891085 + L1MA1 LINE L1 4813 5383 -919 1918 121 0 4 chr15 9804669 9804926 -75890828 + AluSx SINE Alu 35 290 -22 7191 117 23 46 chr15 9804926 9805395 -75890359 + L1MA1 LINE L1 5383 5779 -523 2220 129 0 3 chr15 9805395 9805704 -75890050 + AluSx SINE Alu 2 309 -3 7191 117 23 46 chr15 9805704 9806217 -75889537 + L1MA1 LINE L1 5779 6302 0 1827 177 44 25 chr15 9806229 9806750 -75889004 + L1MB1 LINE L1 4942 5485 -683 348 206 0 0 chr15 9806855 9806923 -75888831 - L1 LINE L1 -2740 3406 3339 * 20831 158 22 47 chr15 9806921 9808447 -75887307 - L1 LINE L1 -2131 5434 3872 498 33 0 0 chr15 9808447 9808507 -75887247 + (TG)n Simple_repeat Simple_repeat 2 61 0 20831 158 22 47 chr15 9808507 9808520 -75887234 - L1 LINE L1 -3693 3872 3860 2050 134 0 7 chr15 9808520 9808818 -75886936 - AluSx SINE Alu -16 296 1 20831 158 22 47 chr15 9808818 9810136 -75885618 - L1 LINE L1 -3705 3860 2511 186 43 0 0 chr15 9810136 9810159 -75885595 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2061 129 0 0 chr15 9810160 9810440 -75885314 - AluSx SINE Alu -32 280 1 20831 158 22 47 chr15 9810440 9813139 -75882615 - L1 LINE L1 -5053 2512 12 1440 215 4 0 chr15 9813138 9813412 -75882342 - L1 LINE L1 -1188 4958 4684 * 1601 98 0 0 chr15 9813512 9813715 -75882039 - AluSx SINE Alu -109 203 1 1779 188 10 39 chr15 9813715 9814104 -75881650 + L1MB1 LINE L1 5791 6168 -21 782 179 0 26 chr15 9814156 9814312 -75881442 + L1MA10 LINE L1 6180 6331 -3 769 151 0 32 chr15 9814493 9814619 -75881135 + AluJb SINE Alu 3 124 -188 24 32 0 0 chr15 9814619 9814650 -75881104 + AT_rich Low_complexity Low_complexity 1 31 0 3570 271 146 23 chr15 9814650 9815537 -75880217 - L2 LINE L2 -90 3223 2446 2578 43 0 3 chr15 9815537 9815841 -75879913 + AluY SINE Alu 1 303 -8 3570 271 146 23 chr15 9815841 9816701 -75879053 - L2 LINE L2 -867 2446 1275 338 260 70 0 chr15 9816704 9816804 -75878950 - MIR SINE MIR -40 222 116 642 329 99 20 chr15 9817625 9817969 -75877785 + L2 LINE L2 2943 3313 0 250 209 0 0 chr15 9817996 9818039 -75877715 + MIR SINE MIR 196 238 -24 205 301 134 92 chr15 9818683 9818716 -75877038 + L2 LINE L2 2592 2622 -692 531 232 18 9 chr15 9818716 9818828 -75876926 + MER81 DNA DNA 1 113 -1 205 301 134 92 chr15 9818828 9818966 -75876788 + L2 LINE L2 2622 2753 -561 2044 137 0 7 chr15 9818966 9819272 -75876482 - AluSx SINE Alu -8 304 1 205 301 134 92 chr15 9819272 9819458 -75876296 + L2 LINE L2 2753 2965 -349 596 259 36 106 chr15 9819757 9819918 -75875836 - L2 LINE L2 -459 2855 2719 2421 99 0 3 chr15 9819918 9820231 -75875523 - AluSq SINE Alu -1 312 1 596 259 36 106 chr15 9820231 9820343 -75875411 - L2 LINE L2 -595 2719 2601 190 361 115 8 chr15 9820883 9821005 -75874749 + L2 LINE L2 2911 3045 -227 482 320 141 2 chr15 9821064 9821270 -75874484 - MIR SINE MIR -2 260 30 516 242 83 0 chr15 9821403 9821560 -75874194 + MIR SINE MIR 80 249 -13 254 282 126 10 chr15 9821551 9821654 -75874100 - L2 LINE L2 -2 3311 3197 * 253 320 68 10 chr15 9821687 9821790 -75873964 + L2 LINE L2 3162 3270 -2 935 256 99 50 chr15 9821918 9822543 -75873211 + HAL1b LINE L1 692 1347 -1 2130 138 0 10 chr15 9822713 9823025 -75872729 - AluSx SINE Alu -3 309 1 21 0 0 0 chr15 9823610 9823631 -75872123 + AT_rich Low_complexity Low_complexity 1 21 0 2316 102 3 0 chr15 9823790 9824093 -75871661 - AluSq SINE Alu -9 304 1 2002 146 3 3 chr15 9824399 9824707 -75871047 + AluSx SINE Alu 1 308 -4 1359 213 80 0 chr15 9824718 9824840 -75870914 + AluJo SINE Alu 1 112 -200 208 0 0 59 chr15 9824840 9824874 -75870880 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1359 213 80 0 chr15 9824874 9825014 -75870740 + AluJo SINE Alu 112 284 -28 1673 188 24 30 chr15 9825034 9825369 -75870385 + L1PA16 LINE L1 5817 6149 -17 366 23 0 0 chr15 9825388 9825431 -75870323 + (TG)n Simple_repeat Simple_repeat 2 44 0 2107 127 0 0 chr15 9825431 9825715 -75870039 - AluSx SINE Alu -28 284 1 434 167 94 10 chr15 9825827 9825923 -75869831 + MER104 DNA Tc2 74 177 -3 2369 103 0 3 chr15 9825926 9826228 -75869526 - AluSx SINE Alu -11 301 1 316 339 28 0 chr15 9826240 9826349 -75869405 + MIR SINE MIR 103 214 -48 799 246 119 25 chr15 9826349 9826593 -75869161 - MLT1D LTR MaLR -190 315 49 1234 202 107 12 chr15 9826611 9826938 -75868816 + MLT1A1 LTR MaLR 1 358 -7 233 143 0 0 chr15 9827290 9827325 -75868429 - MER5B DNA MER1_type 0 178 144 711 221 0 88 chr15 9827594 9827798 -75867956 + MER51C LTR ERV1 453 638 -2 539 193 126 30 chr15 9827798 9827933 -75867821 + MER5B DNA MER1_type 28 175 -3 1968 173 40 12 chr15 9829568 9829914 -75865840 - MLT1A1 LTR MaLR 0 365 10 1778 156 10 7 chr15 9830325 9830620 -75865134 + AluSx SINE Alu 1 296 -16 259 221 73 29 chr15 9831307 9831375 -75864379 + L2 LINE L2 3234 3304 -9 2126 96 7 14 chr15 9831429 9831711 -75864043 - AluSx SINE Alu -32 280 1 290 253 273 40 chr15 9831900 9832050 -75863704 - MIR3 SINE MIR -3 205 21 934 324 116 49 chr15 9832549 9833219 -75862535 + L3 LINE CR1 739 1453 -124 1773 141 11 11 chr15 9833258 9833571 -75862183 + AluSx SINE Alu 1 313 0 438 175 0 0 chr15 9833571 9833634 -75862120 - AluJo/FLAM SINE Alu -196 116 54 * 801 180 23 0 chr15 9833630 9833758 -75861996 + AluJb SINE Alu 164 294 -18 340 129 79 99 chr15 9834225 9834326 -75861428 - LTR33 LTR ERVL 0 521 423 831 264 206 6 chr15 9834340 9834685 -75861069 + L2 LINE L2 2900 3313 0 1038 103 21 0 chr15 9835937 9836133 -75859621 - AluSg/x SINE Alu 0 331 133 388 253 55 12 chr15 9837441 9837558 -75858196 + MIR SINE MIR 5 125 -125 465 19 0 0 chr15 9837575 9837629 -75858125 + (GA)n Simple_repeat Simple_repeat 1 54 0 292 242 30 45 chr15 9837868 9838000 -75857754 + L1ME3 LINE L1 601 730 -5340 * 1208 254 72 47 chr15 9837989 9838461 -75857293 - L1ME LINE L1 -5546 524 41 486 243 185 0 chr15 9838523 9838712 -75857042 + L1ME3 LINE L1 4076 4299 -1781 868 115 0 0 chr15 9838716 9838829 -75856925 + AluJo/FLAM SINE Alu 6 118 -194 1973 107 52 42 chr15 9838829 9839138 -75856616 - AluSx SINE Alu 0 312 1 1921 239 120 55 chr15 9839144 9839348 -75856406 + L1ME3 LINE L1 4255 4444 -1652 1606 186 3 16 chr15 9839348 9839655 -75856099 - AluJo SINE Alu -9 303 1 1921 239 120 55 chr15 9839655 9841183 -75854571 + L1ME3 LINE L1 4444 6095 -1 2099 109 0 0 chr15 9841440 9841714 -75854040 + AluSq SINE Alu 1 274 -39 363 78 0 0 chr15 9841820 9841871 -75853883 + (TTCC)n Simple_repeat Simple_repeat 4 54 0 1897 168 0 13 chr15 9841871 9842187 -75853567 - AluJb SINE Alu 0 312 1 466 348 70 61 chr15 9842382 9842839 -75852915 - L2 LINE L2 -3 3269 2809 237 98 0 0 chr15 9843774 9843815 -75851939 + (CCTG)n Simple_repeat Simple_repeat 2 42 0 237 352 56 0 chr15 9844120 9844228 -75851526 + L2 LINE L2 3191 3304 -9 240 346 6 19 chr15 9844876 9845038 -75850716 + CT-rich Low_complexity Low_complexity 2 161 0 207 88 0 0 chr15 9847115 9847149 -75848605 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 302 152 221 70 chr15 9847651 9847809 -75847945 + L1MEc LINE L1 1561 1742 -4654 596 306 92 42 chr15 9848399 9848921 -75846833 + L1MEc LINE L1 2539 3086 -3129 623 236 45 28 chr15 9848924 9849102 -75846652 - MER58A DNA MER1_type -3 221 41 452 117 0 155 chr15 9849102 9849205 -75846549 + L1P LINE L1 3463 3549 -2597 447 129 24 24 chr15 9849305 9849390 -75846364 - L1 LINE L1 -1563 4583 4499 212 211 28 0 chr15 9850686 9850757 -75844997 + (TA)n Simple_repeat Simple_repeat 1 73 0 496 271 77 6 chr15 9852311 9852481 -75843273 - MLT1L LTR MaLR -40 575 394 6509 38 4 5 chr15 9852531 9853305 -75842449 - L1PA5 LINE L1 0 6154 5382 371 270 43 0 chr15 9853347 9853462 -75842292 - MLT1L LTR MaLR -350 265 146 1856 144 0 29 chr15 9853824 9854137 -75841617 - AluSx SINE Alu -8 304 1 361 351 45 0 chr15 9854359 9854493 -75841261 - MIR3 SINE MIR -39 169 30 206 302 80 107 chr15 9855057 9855431 -75840323 - L2 LINE L2 -2 3270 2907 2344 106 3 0 chr15 9855445 9855756 -75839998 - AluSq SINE Alu -1 312 1 326 229 35 135 chr15 9856784 9857005 -75838749 - MLT1F LTR MaLR -4 538 197 473 170 36 27 chr15 9857421 9857533 -75838221 - L1PB4 LINE L1 -1 6155 6043 182 36 0 36 chr15 9857539 9857567 -75838187 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 2521 64 0 6 chr15 9857595 9857907 -75837847 - AluY SINE Alu -1 310 1 1744 190 98 86 chr15 9858426 9858804 -75836950 - L1MC4 LINE L1 0 8042 7653 4905 105 6 42 chr15 9858804 9859525 -75836229 + L1PA10 LINE L1 5474 6168 0 1744 190 98 86 chr15 9859525 9859684 -75836070 - L1MC4 LINE L1 -389 7653 7498 1825 105 0 0 chr15 9859687 9859926 -75835828 - AluSc SINE Alu -70 239 1 2629 111 25 8 chr15 9860225 9860593 -75835161 + THE1C LTR MaLR 1 374 -1 463 299 110 35 chr15 9860674 9860928 -75834826 + L3 LINE CR1 231 503 -1074 532 331 42 27 chr15 9861631 9861963 -75833791 + L3 LINE CR1 531 867 -710 370 303 85 69 chr15 9861993 9862382 -75833372 + L2 LINE L2 2864 3258 -14 281 293 128 37 chr15 9862784 9862948 -75832806 + L3 LINE CR1 868 1046 -531 316 313 85 45 chr15 9863049 9863225 -75832529 + MIR SINE MIR 64 246 -16 382 248 87 101 chr15 9864095 9864244 -75831510 - MIR SINE MIR -81 181 35 2091 114 0 65 chr15 9864378 9864703 -75831051 + AluSx SINE Alu 1 304 -8 642 197 14 27 chr15 9864856 9865003 -75830751 - L2 LINE L2 -2 3311 3167 259 319 0 21 chr15 9868507 9868601 -75827153 + CT-rich Low_complexity Low_complexity 1 92 0 3329 176 22 5 chr15 9869859 9869913 -75825841 + MER50 LTR ERV1 1 53 -681 464 0 18 0 chr15 9869913 9869969 -75825785 + (CA)n Simple_repeat Simple_repeat 1 57 0 3329 176 22 5 chr15 9869969 9870516 -75825238 + MER50 LTR ERV1 53 612 -122 916 51 0 58 chr15 9870522 9870659 -75825095 - AluYa5/8 SINE Alu -8 302 174 871 153 7 7 chr15 9870660 9870804 -75824950 + MER50 LTR ERV1 568 711 -23 445 293 40 20 chr15 9871063 9871213 -75824541 + MIR SINE MIR 87 239 -23 219 36 0 0 chr15 9871844 9871872 -75823882 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1667 170 33 0 chr15 9871873 9872143 -75823611 - AluJo SINE Alu -33 279 1 597 326 94 4 chr15 9872255 9872488 -75823266 + MIR SINE MIR 8 261 -1 1281 173 0 0 chr15 9872496 9872698 -75823056 - AluJo SINE Alu -26 286 85 2267 131 47 33 chr15 9872905 9873264 -75822490 - THE1B LTR MaLR 0 364 1 4434 217 76 10 chr15 9873832 9875246 -75820508 - L1MD2 LINE L1 -10 6349 4842 2143 121 0 16 chr15 9875679 9875984 -75819770 + AluSx SINE Alu 1 300 -12 1299 126 0 0 chr15 9875998 9876181 -75819573 + AluSq SINE Alu 129 311 -2 2175 119 0 6 chr15 9876230 9876595 -75819159 + AluSx SINE Alu 1 363 0 240 295 13 13 chr15 9877581 9877659 -75818095 + L1M1 LINE L1 5508 5585 -720 531 246 129 29 chr15 9877662 9878026 -75817728 + L1ME3A LINE L1 5559 5946 -216 2373 110 3 53 chr15 9878041 9878396 -75817358 - MER1B DNA MER1_type 0 337 1 557 277 218 11 chr15 9878566 9878837 -75816917 + MLT1G1 LTR MaLR 245 571 -24 2456 58 3 0 chr15 9878965 9879259 -75816495 + AluY SINE Alu 1 295 -16 307 296 12 0 chr15 9881250 9881331 -75814423 + L3b LINE CR1 1285 1366 -217 540 332 157 57 chr15 9883936 9884411 -75811343 - L3 LINE CR1 -199 1378 952 2234 75 3 37 chr15 9884411 9884705 -75811049 + AluSp SINE Alu 5 288 -25 303 49 0 0 chr15 9884707 9884748 -75811006 + (TG)n Simple_repeat Simple_repeat 2 42 0 540 332 157 57 chr15 9884748 9885025 -75810729 - L3 LINE CR1 -625 952 704 968 104 0 28 chr15 9885025 9885169 -75810585 + L1PA15 LINE L1 6023 6162 -3 540 332 157 57 chr15 9885169 9885559 -75810195 - L3 LINE CR1 -873 704 117 362 195 11 0 chr15 9887509 9887596 -75808158 + CT-rich Low_complexity Low_complexity 2 89 0 224 310 158 25 chr15 9887978 9888136 -75807618 + MIR SINE MIR 50 228 -34 198 174 0 0 chr15 9889502 9889548 -75806206 + CT-rich Low_complexity Low_complexity 1 46 0 335 269 138 62 chr15 9889577 9889737 -75806017 - MIR3 SINE MIR -21 187 16 2510 119 8 45 chr15 9890147 9890525 -75805229 - THE1B LTR MaLR 0 364 1 417 338 113 30 chr15 9890629 9891096 -75804658 + L2 LINE L2 1928 2433 -881 200 35 35 0 chr15 9891262 9891291 -75804463 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 361 280 43 109 chr15 9891486 9891665 -75804089 + MIR SINE MIR 32 197 -65 2043 123 10 3 chr15 9891665 9891967 -75803787 - AluSc SINE Alu -5 304 1 361 280 43 109 chr15 9891967 9891998 -75803756 + MIR SINE MIR 197 228 -34 1392 223 176 0 chr15 9892027 9892350 -75803404 - LTR16C LTR ERVL -12 479 100 434 267 57 51 chr15 9893212 9893301 -75802453 - MIR SINE MIR -85 177 90 2570 59 0 0 chr15 9893301 9893607 -75802147 + AluY SINE Alu 1 306 -5 434 267 57 51 chr15 9893607 9893693 -75802061 - MIR SINE MIR -172 90 1 225 0 0 0 chr15 9894161 9894186 -75801568 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 2563 49 0 0 chr15 9894218 9894522 -75801232 + AluY SINE Alu 1 304 -7 621 186 79 21 chr15 9895153 9895293 -75800461 - MIR SINE MIR -21 241 94 707 278 71 39 chr15 9895303 9895558 -75800196 - MLT1E LTR MaLR -317 276 14 1290 192 73 52 chr15 9896146 9896474 -75799280 + MLT2C1 LTR ERVL 8 342 -55 203 61 30 0 chr15 9896475 9896508 -75799246 + (TG)n Simple_repeat Simple_repeat 2 35 0 330 250 0 0 chr15 9897202 9897266 -75798488 + Charlie1 DNA MER1_type 8 71 -2690 * 1429 175 75 56 chr15 9897264 9897547 -75798207 + Charlie1 DNA MER1_type 2343 2638 -123 2704 39 3 0 chr15 9897547 9897856 -75797898 - AluY SINE Alu -1 310 1 1429 175 75 56 chr15 9897856 9897983 -75797771 + Charlie1 DNA MER1_type 2638 2761 0 356 269 11 11 chr15 9898660 9898753 -75797001 + MIR SINE MIR 51 143 -119 5577 135 65 19 chr15 9899206 9900646 -75795108 - L1MA4A LINE L1 -3 6300 4796 270 81 0 0 chr15 9900957 9900994 -75794760 + (A)n Simple_repeat Simple_repeat 1 37 0 544 254 29 14 chr15 9902536 9902674 -75793080 + MIR SINE MIR 47 186 -76 414 174 0 0 chr15 9902674 9902743 -75793011 + Tigger2 DNA MER2_type 1 69 -2649 * 2838 127 25 14 chr15 9902733 9903174 -75792580 + Tigger2 DNA MER2_type 2273 2718 0 2520 119 31 3 chr15 9903244 9903598 -75792156 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr15 9904188 9904211 -75791543 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr15 9904380 9904405 -75791349 + (A)n Simple_repeat Simple_repeat 1 25 0 336 303 21 49 chr15 9904422 9904620 -75791134 + MIR SINE MIR 7 194 -68 2547 50 0 3 chr15 9905027 9905327 -75790427 + AluY SINE Alu 1 299 -12 2055 92 0 0 chr15 9905658 9905929 -75789825 + L1MA3 LINE L1 6035 6305 0 203 61 30 0 chr15 10106737 10106770 -75588984 + (CA)n Simple_repeat Simple_repeat 2 35 0 1308 191 73 52 chr15 10106771 10107101 -75588653 - MLT2C1 LTR ERVL -55 342 6 707 278 71 39 chr15 10107687 10107942 -75587812 + MLT1E LTR MaLR 14 276 -317 642 189 56 21 chr15 10107952 10108095 -75587659 + MIR SINE MIR 94 241 -21 2593 46 0 0 chr15 10108726 10109030 -75586724 - AluY SINE Alu -7 304 1 225 0 0 0 chr15 10109062 10109087 -75586667 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 434 267 57 51 chr15 10109555 10109641 -75586113 + MIR SINE MIR 1 85 -177 2559 62 0 0 chr15 10109641 10109947 -75585807 - AluY SINE Alu -5 306 1 434 267 57 51 chr15 10109947 10110036 -75585718 + MIR SINE MIR 85 177 -85 1392 223 176 0 chr15 10110898 10111221 -75584533 + LTR16C LTR ERVL 100 479 -12 361 280 43 109 chr15 10111250 10111281 -75584473 - MIR SINE MIR -34 228 197 2043 123 10 3 chr15 10111281 10111583 -75584171 + AluSc SINE Alu 1 304 -5 361 280 43 109 chr15 10111583 10111762 -75583992 - MIR SINE MIR -65 197 32 200 35 35 0 chr15 10111957 10111986 -75583768 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 417 338 113 30 chr15 10112152 10112619 -75583135 - L2 LINE L2 -881 2433 1928 2533 116 8 45 chr15 10112723 10113101 -75582653 + THE1B LTR MaLR 1 364 0 335 269 138 62 chr15 10113511 10113671 -75582083 + MIR3 SINE MIR 16 187 -21 198 174 0 0 chr15 10113700 10113746 -75582008 + GA-rich Low_complexity Low_complexity 1 46 0 224 310 158 25 chr15 10115112 10115270 -75580484 - MIR SINE MIR -34 228 50 362 195 11 0 chr15 10115652 10115739 -75580015 + GA-rich Low_complexity Low_complexity 2 89 0 527 333 157 57 chr15 10117689 10118079 -75577675 + L3 LINE CR1 117 467 -1110 939 111 0 28 chr15 10118079 10118223 -75577531 - L1PA15 LINE L1 -3 6162 6023 527 333 157 57 chr15 10118223 10118500 -75577254 + L3 LINE CR1 467 715 -862 387 0 0 0 chr15 10118500 10118543 -75577211 + (CA)n Simple_repeat Simple_repeat 2 44 0 2219 78 3 37 chr15 10118545 10118839 -75576915 - AluSp SINE Alu -25 288 5 527 333 157 57 chr15 10118839 10119314 -75576440 + L3 LINE CR1 715 1378 -199 831 78 21 0 chr15 10120059 10120201 -75575553 + (TC)n Simple_repeat Simple_repeat 2 146 0 432 0 0 0 chr15 10120203 10120251 -75575503 + (CA)n Simple_repeat Simple_repeat 1 48 0 231 152 0 0 chr15 10120670 10120716 -75575038 + GA-rich Low_complexity Low_complexity 1 46 0 314 215 43 43 chr15 10121712 10121805 -75573949 + MIR SINE MIR 49 141 -121 182 225 25 0 chr15 10122978 10123018 -75572736 - MIR SINE MIR -126 136 96 2456 68 0 0 chr15 10124387 10124696 -75571058 + AluY SINE Alu 1 309 -2 808 218 35 0 chr15 10130389 10130563 -75565191 + MIR SINE MIR 83 262 0 219 275 23 23 chr15 10131606 10131713 -75564041 + MIR SINE MIR 86 191 -71 2302 161 61 17 chr15 10131901 10132310 -75563444 - MSTA LTR MaLR 0 428 2 356 291 78 48 chr15 10132845 10133051 -75562703 + L2 LINE L2 3098 3309 -4 495 87 0 0 chr15 10133938 10134007 -75561747 + (TTTTC)n Simple_repeat Simple_repeat 1 69 0 214 91 0 91 chr15 10134020 10134064 -75561690 + (CCCCCT)n Simple_repeat Simple_repeat 1 40 0 468 51 0 0 chr15 10134064 10134123 -75561631 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 1898 171 0 7 chr15 10134128 10134438 -75561316 - AluJb SINE Alu -4 308 1 466 348 70 61 chr15 10134633 10135090 -75560664 - L2 LINE L2 -3 3269 2809 237 98 0 0 chr15 10136025 10136066 -75559688 + (CCTG)n Simple_repeat Simple_repeat 2 42 0 237 352 56 0 chr15 10136371 10136479 -75559275 + L2 LINE L2 3191 3304 -9 240 346 6 19 chr15 10137127 10137289 -75558465 + CT-rich Low_complexity Low_complexity 2 161 0 197 98 24 0 chr15 10139365 10139406 -75556348 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 302 152 221 70 chr15 10139902 10140060 -75555694 + L1MEc LINE L1 1561 1742 -4654 596 306 92 42 chr15 10140650 10141172 -75554582 + L1MEc LINE L1 2539 3086 -3129 623 236 45 28 chr15 10141175 10141353 -75554401 - MER58A DNA MER1_type -3 221 41 3354 139 29 27 chr15 10141353 10141914 -75553840 + L1PA12 LINE L1 3463 4024 -2122 8415 143 17 24 chr15 10142014 10144149 -75551605 + L1PA12 LINE L1 4020 6167 -1 21 0 0 0 chr15 10144154 10144175 -75551579 + AT_rich Low_complexity Low_complexity 1 21 0 325 249 140 62 chr15 10144289 10144482 -75551272 + L1MEc LINE L1 3081 3288 -2927 1935 107 52 0 chr15 10144608 10144880 -75550874 + AluSx SINE Alu 21 306 -6 528 200 0 0 chr15 10144880 10144990 -75550764 + GA-rich Low_complexity Low_complexity 1 110 0 2495 49 7 10 chr15 10145213 10145521 -75550233 + AluY SINE Alu 1 307 -4 693 266 49 84 chr15 10145522 10146119 -75549635 + L1MEc LINE L1 3296 3871 -2344 587 234 111 19 chr15 10146106 10146324 -75549430 + L1P3 LINE L1 5545 5791 -363 * 355 181 296 82 chr15 10146345 10146373 -75549381 - MER4C LTR ERV1 -18 447 426 2512 68 0 3 chr15 10146373 10146683 -75549071 - AluY SINE Alu -2 309 1 355 181 296 82 chr15 10146683 10146897 -75548857 - MER4C LTR ERV1 -39 426 153 * 1352 139 133 51 chr15 10146867 10147183 -75548571 - MER4A LTR ERV1 -322 342 1 279 241 161 43 chr15 10147187 10147349 -75548405 + L1ME3A LINE L1 5782 5962 -208 419 300 58 90 chr15 10147742 10148046 -75547708 - L2 LINE L2 -601 2713 2424 2657 30 0 0 chr15 10148046 10148343 -75547411 + AluY SINE Alu 1 297 -14 419 300 58 90 chr15 10148343 10148448 -75547306 - L2 LINE L2 -890 2424 2317 293 244 57 148 chr15 10148858 10148877 -75546877 + MIR3 SINE MIR 35 54 -154 2192 133 52 42 chr15 10148877 10149262 -75546492 - MLT1B LTR MaLR -1 389 1 293 244 57 148 chr15 10149262 10149374 -75546380 + MIR3 SINE MIR 54 175 -33 641 164 158 64 chr15 10149374 10149477 -75546277 - MER5A DNA MER1_type -2 187 95 2205 123 0 0 chr15 10149477 10149777 -75545977 - AluSx SINE Alu -12 300 1 641 164 158 64 chr15 10149777 10149814 -75545940 - MER5A DNA MER1_type -94 95 63 198 0 0 0 chr15 10149814 10149836 -75545918 + (CTG)n Simple_repeat Simple_repeat 2 23 0 641 164 158 64 chr15 10149836 10149865 -75545889 - MER5A DNA MER1_type -126 63 1 293 244 57 148 chr15 10149865 10149908 -75545846 + MIR3 SINE MIR 175 194 -14 879 203 19 57 chr15 10149937 10150149 -75545605 - MER105 DNA DNA 0 204 1 394 294 49 60 chr15 10150291 10150475 -75545279 - MIR3 SINE MIR -15 193 12 28 0 0 0 chr15 10151752 10151780 -75543974 + AT_rich Low_complexity Low_complexity 1 28 0 181 298 0 0 chr15 10153259 10153316 -75542438 + L3 LINE CR1 782 838 -739 437 292 22 36 chr15 10153388 10153525 -75542229 - MIR SINE MIR -55 153 19 267 204 0 0 chr15 10153658 10153707 -75542047 - L2 LINE L2 0 3313 3265 606 153 0 0 chr15 10153800 10153885 -75541869 - AluJb SINE Alu -26 286 202 704 161 0 9 chr15 10155300 10155412 -75540342 + AluJo SINE Alu 42 152 -160 10436 172 36 21 chr15 10155424 10155889 -75539865 - L1MC3 LINE L1 -394 7391 6934 2250 45 4 4 chr15 10155889 10156156 -75539598 - AluY SINE Alu -16 295 29 10436 172 36 21 chr15 10156156 10156904 -75538850 - L1MC3 LINE L1 -851 6934 6198 2263 107 3 3 chr15 10156904 10157214 -75538540 - AluSq SINE Alu -3 310 1 10436 172 36 21 chr15 10157214 10158048 -75537706 - L1MC3 LINE L1 -1587 6198 5313 2593 26 0 0 chr15 10158032 10158335 -75537419 - L1PA3 LINE L1 0 6155 5853 * 5290 24 15 0 chr15 10158034 10158619 -75537135 - L1PA3 LINE L1 0 6155 5562 16376 29 2 0 chr15 10158619 10160548 -75535206 + L1P LINE L1 2409 4341 -1805 535 163 69 124 chr15 10160539 10160772 -75534982 - L1M4 LINE L1 -779 5367 5148 * 652 338 26 30 chr15 10161654 10161956 -75533798 - L2 LINE L2 -526 2788 2488 395 206 163 0 chr15 10161970 10162062 -75533692 - MER81 DNA DNA -7 107 1 2288 93 7 3 chr15 10163339 10163639 -75532115 + AluSq SINE Alu 1 301 -12 371 306 32 0 chr15 10163854 10163978 -75531776 - MIR SINE MIR -80 182 55 202 260 122 41 chr15 10164443 10164566 -75531188 - L2 LINE L2 -994 2320 2188 291 370 44 6 chr15 10164572 10164753 -75531001 + MIR SINE MIR 8 195 -67 277 259 35 0 chr15 10165011 10165096 -75530658 + MIR SINE MIR 105 192 -70 502 45 15 0 chr15 10166070 10166136 -75529618 + MER41B LTR ERV1 481 547 -88 350 272 197 19 chr15 10166511 10166669 -75529085 + MIR SINE MIR 1 187 -62 215 111 0 28 chr15 10167305 10167341 -75528413 - MIR SINE MIR -19 243 209 1056 266 80 77 chr15 10167478 10168031 -75527723 + L2 LINE L2 2520 3070 -243 378 0 0 0 chr15 10168031 10168073 -75527681 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2294 57 0 11 chr15 10168075 10168358 -75527396 - AluY SINE Alu -31 280 1 1056 266 80 77 chr15 10168358 10168573 -75527181 + L2 LINE L2 3070 3291 -22 1860 234 82 26 chr15 10168583 10169084 -75526670 - L1ME1 LINE L1 -9 6157 5629 334 325 26 0 chr15 10169105 10169219 -75526535 - MIR SINE MIR -121 141 25 504 326 22 11 chr15 10170176 10170357 -75525397 - MER5A DNA MER1_type 0 189 7 498 243 0 0 chr15 10170736 10170839 -75524915 + MIR SINE MIR 159 261 -1 270 73 0 0 chr15 10170851 10170892 -75524862 + (CAG)n Simple_repeat Simple_repeat 1 41 0 730 162 92 7 chr15 10172186 10172328 -75523426 + MER3 DNA MER1_type 15 168 -41 1883 136 71 8 chr15 10172331 10172699 -75523055 + MER3 DNA MER1_type 2234 2624 0 202 416 32 39 chr15 10173711 10173990 -75521764 + L3 LINE CR1 35 311 -1266 1115 216 25 72 chr15 10174014 10174333 -75521421 + L1MA10 LINE L1 6030 6333 -1 214 375 12 0 chr15 10174413 10174493 -75521261 + L3 LINE CR1 438 518 -1059 222 317 133 0 chr15 10174529 10174649 -75521105 + L2 LINE L2 3178 3313 0 904 301 95 6 chr15 10174725 10175074 -75520680 + L3 LINE CR1 618 997 -580 290 271 129 41 chr15 10175237 10175407 -75520347 + L3 LINE CR1 1291 1475 -102 186 352 23 11 chr15 10176261 10176349 -75519405 - MIR3 SINE MIR -31 177 89 225 0 0 0 chr15 10176776 10176801 -75518953 + (T)n Simple_repeat Simple_repeat 1 25 0 497 256 205 5 chr15 10177493 10177688 -75518066 - MIR SINE MIR -28 234 1 329 138 23 35 chr15 10178009 10178096 -75517658 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 182 223 107 116 chr15 10178322 10178434 -75517320 + L2 LINE L2 3145 3255 -17 449 266 8 31 chr15 10179352 10179480 -75516274 + L2 LINE L2 3189 3313 0 298 274 95 36 chr15 10179537 10179705 -75516049 - MIR SINE MIR -50 212 35 199 292 50 83 chr15 10179908 10180028 -75515726 - L2 LINE L2 -12 3260 3145 1911 132 3 34 chr15 10180643 10180796 -75514958 - AluSx SINE Alu -26 286 145 2419 72 7 3 chr15 10180796 10181102 -75514652 - AluY SINE Alu -4 307 1 1911 132 3 34 chr15 10181102 10181243 -75514511 - AluSx SINE Alu -167 145 1 344 331 63 7 chr15 10181780 10181922 -75513832 + MIR SINE MIR 71 220 -42 607 325 49 16 chr15 10183537 10183780 -75511974 + MIR SINE MIR 12 262 0 2184 194 28 41 chr15 10184156 10184274 -75511480 - L1ME2 LINE L1 -9 6155 6037 2468 58 0 0 chr15 10184274 10184566 -75511188 + AluY SINE Alu 1 292 -19 2184 194 28 41 chr15 10184566 10184956 -75510798 - L1ME2 LINE L1 -127 6037 5654 444 252 128 14 chr15 10184957 10185189 -75510565 - LTR16A1 LTR ERVL -193 257 1 1312 206 31 17 chr15 10185194 10185486 -75510268 - L1ME2 LINE L1 -1071 5075 4780 838 257 156 15 chr15 10185658 10185997 -75509757 - MLT1J2 LTR MaLR 0 450 64 628 226 27 54 chr15 10186071 10186257 -75509497 + MIR SINE MIR 5 185 -77 1767 142 45 24 chr15 10186284 10186573 -75509181 - AluJb SINE Alu -17 295 1 257 322 11 11 chr15 10186573 10186663 -75509091 + MIR SINE MIR 173 262 0 1858 180 0 3 chr15 10187173 10187468 -75508286 + AluJo SINE Alu 1 294 -18 2367 203 23 41 chr15 10188087 10188129 -75507625 - MLT2B3 LTR ERVL -7 547 506 222 37 0 0 chr15 10188129 10188156 -75507598 + (TG)n Simple_repeat Simple_repeat 2 28 0 204 40 0 0 chr15 10188155 10188180 -75507574 + (TC)n Simple_repeat Simple_repeat 2 26 0 2367 203 23 41 chr15 10188156 10188179 -75507575 - MLT2B3 LTR ERVL -48 506 484 189 0 0 0 chr15 10188179 10188200 -75507554 + (TA)n Simple_repeat Simple_repeat 1 21 0 2367 203 23 41 chr15 10188200 10188714 -75507040 - MLT2B3 LTR ERVL -70 484 1 205 233 105 58 chr15 10189468 10189554 -75506200 + L2 LINE L2 2583 2672 -642 377 325 63 0 chr15 10189697 10189823 -75505931 - MIR3 SINE MIR -10 198 65 * 394 238 162 0 chr15 10189822 10189927 -75505827 + L2 LINE L2 3188 3309 -4 2231 114 7 0 chr15 10190811 10191109 -75504645 - AluSx SINE Alu -8 304 5 225 283 0 0 chr15 10191142 10191202 -75504552 + L1MC/D LINE L1 5809 5868 -1940 1054 164 11 6 chr15 10192048 10192225 -75503529 - L1PA16 LINE L1 -16 6150 5973 2265 123 6 0 chr15 10192225 10192550 -75503204 + L1PA16 LINE L1 5614 5940 -226 23 0 0 0 chr15 10192922 10192945 -75502809 + AT_rich Low_complexity Low_complexity 1 23 0 198 60 120 0 chr15 10192945 10192995 -75502759 + (TTATA)n Simple_repeat Simple_repeat 2 57 0 46 0 0 0 chr15 10192995 10193041 -75502713 + AT_rich Low_complexity Low_complexity 1 46 0 1355 158 22 29 chr15 10193041 10193093 -75502661 - L1MA8 LINE L1 -23 6268 6217 189 0 0 0 chr15 10193093 10193114 -75502640 + (CA)n Simple_repeat Simple_repeat 1 21 0 1355 158 22 29 chr15 10193114 10193339 -75502415 - L1MA8 LINE L1 -74 6217 5993 1964 156 0 6 chr15 10194171 10194497 -75501257 - AluJo SINE Alu 0 324 1 3965 153 31 15 chr15 10195045 10195335 -75500419 - L1MB2 LINE L1 -39 6132 5848 2538 70 0 6 chr15 10195335 10195647 -75500107 - AluY SINE Alu 0 311 2 3965 153 31 15 chr15 10195647 10196031 -75499723 - L1MB2 LINE L1 -323 5848 5447 992 259 162 56 chr15 10196036 10196802 -75498952 + HAL1 LINE L1 802 1648 -859 278 291 7 74 chr15 10197241 10197389 -75498365 + HAL1b LINE L1 750 887 -461 2748 32 48 0 chr15 10197413 10197728 -75498026 + L1PA4 LINE L1 5822 6151 -4 434 264 54 62 chr15 10197795 10198037 -75497717 + HAL1 LINE L1 2267 2506 -1 194 0 0 37 chr15 10198758 10198785 -75496969 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1910 229 60 36 chr15 10199042 10199591 -75496163 + MER68 LTR ERV1 1 562 0 2425 74 3 0 chr15 10199837 10200134 -75495620 + AluY SINE Alu 1 298 -13 611 332 131 13 chr15 10200308 10200697 -75495057 + L2 LINE L2 2859 3293 -20 1356 282 55 9 chr15 10200832 10201272 -75494482 - LTR16C LTR ERVL -29 462 3 602 314 67 9 chr15 10202333 10202556 -75493198 - MIR SINE MIR -6 256 21 381 184 9 64 chr15 10203414 10203543 -75492211 - MER5B DNA MER1_type -34 144 42 562 196 0 0 chr15 10204296 10204388 -75491366 + MER2 DNA MER2_type 8 99 -246 341 217 0 0 chr15 10204388 10204448 -75491306 - MER2 DNA MER2_type -1 344 285 230 154 26 0 chr15 10204440 10204479 -75491275 - MER8 DNA MER2_type -97 142 103 * 444 192 13 0 chr15 10205052 10205130 -75490624 + MADE1 DNA Mariner 2 80 0 348 311 0 0 chr15 10205145 10205248 -75490506 - Charlie8 DNA MER1_type -2127 290 188 4940 223 23 31 chr15 10205567 10206498 -75489256 - MER49 LTR ERV1 0 923 1 220 313 176 38 chr15 10207557 10207688 -75488066 + MIR SINE MIR 1 149 -113 2077 106 3 7 chr15 10207846 10208139 -75487615 + AluSg SINE Alu 1 292 -18 186 133 0 0 chr15 10208315 10208345 -75487409 + (TATATG)n Simple_repeat Simple_repeat 3 32 0 798 226 62 54 chr15 10208395 10208697 -75487057 - L1ME3A LINE L1 -28 6142 5837 544 228 63 8 chr15 10208698 10208825 -75486929 - MER94 DNA DNA 0 134 1 23 0 0 0 chr15 10209788 10209811 -75485943 + AT_rich Low_complexity Low_complexity 1 23 0 402 210 160 8 chr15 10210296 10210415 -75485339 + L1ME4a LINE L1 5944 6080 -41 367 321 80 12 chr15 10212734 10212896 -75482858 - MIR SINE MIR -70 192 20 456 298 73 7 chr15 10213356 10213507 -75482247 + MIR SINE MIR 20 180 -82 1061 310 35 32 chr15 10214100 10214564 -75481190 - MLT1K LTR MaLR 0 588 124 354 259 256 39 chr15 10215211 10215327 -75480427 - L2 LINE L2 -9 3304 3214 1430 188 25 121 chr15 10215327 10215731 -75480023 - MLT1A1 LTR MaLR 0 365 1 354 259 256 39 chr15 10215731 10216036 -75479718 - L2 LINE L2 -99 3214 2740 361 173 39 19 chr15 10216402 10216456 -75479298 + MER53 DNA DNA 1 52 -137 4553 128 42 4 chr15 10216456 10217172 -75478582 - L1PA16 LINE L1 0 6166 5424 361 173 39 19 chr15 10217172 10217221 -75478533 + MER53 DNA DNA 52 106 -83 620 79 0 0 chr15 10217646 10217722 -75478032 - L1PA3 LINE L1 -19 6136 6061 188 67 33 0 chr15 10217726 10217756 -75477998 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 805 207 171 56 chr15 10217848 10218152 -75477602 - L1MEc LINE L1 -6014 382 44 2534 119 28 0 chr15 10219196 10219550 -75476204 - THE1B LTR MaLR 0 364 1 2150 64 50 3 chr15 10222595 10222877 -75472877 - AluY SINE Alu -16 295 1 1536 159 49 19 chr15 10222997 10223305 -75472449 + MER33 DNA MER1_type 6 322 -2 22 0 0 0 chr15 10223484 10223506 -75472248 + AT_rich Low_complexity Low_complexity 1 22 0 8859 171 27 11 chr15 10223707 10226355 -75469399 - L1PA16 LINE L1 -22 6144 3472 259 269 172 18 chr15 10228254 10228421 -75467333 - MIR SINE MIR -50 212 21 249 281 16 0 chr15 10228651 10228715 -75467039 - L2 LINE L2 -3 3269 3205 430 339 108 14 chr15 10229085 10229371 -75466383 - L2 LINE L2 -644 2670 2358 218 300 77 39 chr15 10230474 10230604 -75465150 - L2 LINE L2 -449 2865 2731 3893 166 41 26 chr15 10230750 10231480 -75464274 - L1MB4 LINE L1 -12 6168 5428 731 271 84 0 chr15 10231882 10232096 -75463658 + MIR SINE MIR 2 233 -29 647 190 124 0 chr15 10232591 10232712 -75463042 + FLAM_A SINE Alu 1 136 -6 2566 46 0 3 chr15 10233397 10233699 -75462055 - AluY SINE Alu -8 303 3 282 271 171 0 chr15 10234329 10234469 -75461285 - MIR SINE MIR -58 204 41 1601 204 33 46 chr15 10234481 10234849 -75460905 - MLT1A1 LTR MaLR -2 363 1 632 210 118 0 chr15 10235087 10235206 -75460548 + FLAM_A SINE Alu 1 133 0 4885 156 23 10 chr15 10237885 10238655 -75457099 - LTR39 LTR ERV1 0 783 4 299 267 98 0 chr15 10238810 10238912 -75456842 + L1ME LINE L1 5484 5594 -527 1503 180 0 11 chr15 10239240 10239501 -75456253 + AluJb SINE Alu 1 258 -54 225 94 0 0 chr15 10240347 10240379 -75455375 + (T)n Simple_repeat Simple_repeat 1 32 0 1108 139 42 0 chr15 10240385 10240428 -75455326 - AluSg SINE Alu -137 173 133 261 0 0 0 chr15 10240428 10240457 -75455297 + (TG)n Simple_repeat Simple_repeat 2 30 0 1108 139 42 0 chr15 10240457 10240579 -75455175 - AluSg SINE Alu -177 133 1 980 89 0 57 chr15 10242559 10242575 -75453179 - L1PA13 LINE L1 0 6163 6148 2417 72 0 10 chr15 10242575 10242879 -75452875 - AluY SINE Alu -10 301 1 980 89 0 57 chr15 10242879 10243019 -75452735 - L1PA13 LINE L1 -15 6148 6016 267 274 109 50 chr15 10243040 10243338 -75452416 - L1PA8A LINE L1 -241 5929 5608 1584 98 288 176 chr15 10243342 10243881 -75451873 - LTR12 LTR ERV1 -115 599 1 399 262 136 43 chr15 10243991 10244258 -75451496 - L1MC/D LINE L1 -747 5399 5158 2197 112 0 16 chr15 10244258 10244563 -75451191 - AluSg SINE Alu -10 300 1 399 262 136 43 chr15 10244563 10244820 -75450934 - L1MC/D LINE L1 -988 5158 4889 351 0 0 0 chr15 10244877 10244916 -75450838 + (TG)n Simple_repeat Simple_repeat 1 39 0 463 272 119 53 chr15 10244928 10245171 -75450583 - MLT1J LTR MaLR -22 489 231 1302 180 44 0 chr15 10245494 10245744 -75450010 - AluJo SINE Alu -14 298 38 1548 138 55 75 chr15 10245870 10246217 -75449537 - L1MA7 LINE L1 -85 6206 5867 523 205 59 96 chr15 10246277 10246516 -75449238 - L1MC/D LINE L1 -1440 4706 4477 321 280 127 21 chr15 10246846 10247035 -75448719 - L1MC/D LINE L1 -1744 4402 4194 420 319 27 16 chr15 10247402 10247590 -75448164 + MIR SINE MIR 69 258 -4 1862 171 3 0 chr15 10247765 10248052 -75447702 + AluJb SINE Alu 1 288 -24 1048 196 52 0 chr15 10248187 10248381 -75447373 + MER20 DNA MER1_type 1 204 -15 545 320 30 39 chr15 10249131 10249362 -75446392 - MIR SINE MIR -21 241 13 2088 128 3 3 chr15 10250736 10251034 -75444720 + AluSx SINE Alu 1 298 -14 1144 329 100 35 chr15 10252197 10252568 -75443186 - L2 LINE L2 -17 3296 2950 928 9 38 0 chr15 10252568 10252674 -75443080 + L1PA4 LINE L1 6046 6155 0 1144 329 100 35 chr15 10252674 10253226 -75442528 - L2 LINE L2 -363 2950 2305 450 0 0 0 chr15 10253424 10253474 -75442280 + (CA)n Simple_repeat Simple_repeat 2 51 0 2564 114 29 16 chr15 10254131 10254516 -75441238 - MLT1B LTR MaLR 0 390 1 758 184 149 6 chr15 10255384 10255558 -75440196 - MER3 DNA MER1_type -6 203 5 248 188 14 72 chr15 10255665 10255734 -75440020 - MIR SINE MIR -140 122 58 21 36 0 0 chr15 10255734 10255762 -75439992 + AT_rich Low_complexity Low_complexity 1 28 0 1043 269 121 33 chr15 10256800 10257286 -75438468 - MLT1F LTR MaLR -3 539 11 216 0 0 0 chr15 10257847 10257871 -75437883 + (A)n Simple_repeat Simple_repeat 1 24 0 370 324 170 16 chr15 10258802 10258984 -75436770 + MIR SINE MIR 47 256 -6 229 354 131 0 chr15 10259561 10259691 -75436063 - MIR SINE MIR -75 187 41 802 301 37 8 chr15 10260326 10260572 -75435182 - MIR SINE MIR -8 254 2 538 333 184 31 chr15 10262228 10263411 -75432343 - L2 LINE L2 -2 3270 1877 470 353 46 9 chr15 10263822 10264040 -75431714 - L3b LINE CR1 -160 1423 1198 3455 148 73 5 chr15 10265028 10265628 -75430126 + L1MA6 LINE L1 5660 6300 0 2132 122 114 150 chr15 10265798 10266332 -75429422 + MLT2B2 LTR ERVL 1 515 0 259 269 55 76 chr15 10266824 10266969 -75428785 + MER5B DNA MER1_type 35 176 -2 218 314 29 0 chr15 10268337 10268407 -75427347 + L2 LINE L2 3201 3272 0 262 279 100 57 chr15 10268424 10268564 -75427190 + MIR SINE MIR 80 225 -37 2706 33 0 0 chr15 10268700 10269003 -75426751 - AluY SINE Alu -8 303 1 275 344 43 31 chr15 10269532 10269695 -75426059 + L2 LINE L2 3043 3207 -65 1817 107 75 21 chr15 10270656 10270936 -75424818 + AluJb SINE Alu 1 295 -17 952 301 115 25 chr15 10271770 10272206 -75423548 - L2 LINE L2 -2 3311 2837 249 128 0 0 chr15 10272216 10272263 -75423491 + LTR66 LTR ERVL 393 439 -171 240 191 36 0 chr15 10272265 10272349 -75423405 + (TA)n Simple_repeat Simple_repeat 1 87 0 3363 166 32 44 chr15 10272382 10273275 -75422479 - L1MA9 LINE L1 -37 6283 5454 2092 255 77 71 chr15 10273305 10274139 -75421615 - L2 LINE L2 -507 2807 1969 196 268 18 71 chr15 10274345 10274457 -75421297 + MIR SINE MIR 83 188 -74 245 317 114 24 chr15 10274558 10274681 -75421073 - L2 LINE L2 -1 3312 3179 746 256 101 9 chr15 10275816 10276043 -75419711 + MIR SINE MIR 15 262 0 183 280 242 15 chr15 10276048 10276180 -75419574 + MIR SINE MIR 101 262 0 714 250 95 0 chr15 10276619 10276819 -75418935 + MIR SINE MIR 41 259 -3 284 193 0 5 chr15 10281949 10282003 -75413751 - MLT2C1 LTR ERVL 0 397 351 246 220 0 0 chr15 10282003 10282062 -75413692 + (TGGG)n Simple_repeat Simple_repeat 4 62 0 1722 210 26 6 chr15 10282063 10282416 -75413338 - MLT2C1 LTR ERVL -37 427 1 212 31 62 0 chr15 10282802 10282834 -75412920 + T-rich Low_complexity Low_complexity 2 35 0 254 296 136 30 chr15 10282840 10282972 -75412782 + MIR3 SINE MIR 1 146 -62 2202 124 67 6 chr15 10283073 10283388 -75412366 - MER1B DNA MER1_type 0 337 4 793 236 100 22 chr15 10283388 10283617 -75412137 + MIR SINE MIR 15 261 -1 233 288 85 8 chr15 10283626 10283744 -75412010 + MIR SINE MIR 91 217 -45 2648 51 0 0 chr15 10285355 10285666 -75410088 + AluY SINE Alu 1 311 0 203 306 109 48 chr15 10287264 10287411 -75408343 - MIR SINE MIR -10 252 97 820 244 65 30 chr15 10287944 10288174 -75407580 + MIR SINE MIR 4 241 -21 187 267 0 0 chr15 10288200 10288245 -75407509 + L2 LINE L2 3217 3261 -11 2413 261 74 51 chr15 10288430 10289240 -75406514 - L1MEc LINE L1 -3319 2896 2105 2256 102 0 13 chr15 10289240 10289543 -75406211 - AluSx SINE Alu -13 299 1 2413 261 74 51 chr15 10289543 10290163 -75405591 - L1MEc LINE L1 -4110 2105 1500 1973 127 3 0 chr15 10290163 10290480 -75405274 - AluSq SINE Alu 0 318 1 2413 261 74 51 chr15 10290480 10291239 -75404515 - L1MEc LINE L1 -4715 1500 707 393 301 8 15 chr15 10291751 10291884 -75403870 - L1MEc LINE L1 -5933 272 141 726 311 223 31 chr15 10292427 10293896 -75401858 - L2 LINE L2 -841 2473 724 1286 209 149 30 chr15 10293919 10294316 -75401438 - MLT1C LTR MaLR -9 458 15 1938 150 0 7 chr15 10294677 10294977 -75400777 + AluSx SINE Alu 1 298 -14 2061 99 7 7 chr15 10296335 10296640 -75399114 + AluSc SINE Alu 1 305 0 253 307 129 0 chr15 10296793 10296894 -75398860 + MIR SINE MIR 37 150 -58 4928 119 21 6 chr15 10296974 10297687 -75398067 - L1PA14 LINE L1 -2 6159 5436 227 339 55 28 chr15 10298198 10298307 -75397447 + L3b LINE CR1 1457 1568 -15 191 294 24 71 chr15 10298772 10298857 -75396897 - MER5A DNA MER1_type -102 87 7 663 240 0 0 chr15 10301565 10301686 -75394068 + FLAM_A SINE Alu 1 121 -12 246 105 0 0 chr15 10301686 10301724 -75394030 + (ATG)n Simple_repeat Simple_repeat 2 39 0 359 301 62 7 chr15 10303152 10303298 -75392456 + MIR SINE MIR 77 230 -32 193 133 89 0 chr15 10304441 10304486 -75391268 - L2 LINE L2 -2 3311 3263 385 352 26 16 chr15 10305143 10305336 -75390418 + L2 LINE L2 2468 2662 -652 5948 129 56 28 chr15 10305344 10306742 -75389012 - L1MA5 LINE L1 -5 6295 4850 196 248 0 48 chr15 10306936 10307081 -75388673 + CT-rich Low_complexity Low_complexity 2 139 0 560 328 55 30 chr15 10307357 10307592 -75388162 - MIR SINE MIR -11 251 11 208 337 81 23 chr15 10307852 10307938 -75387816 - L2 LINE L2 -48 3224 3134 1081 215 87 4 chr15 10310484 10310726 -75385028 + MIR SINE MIR 1 262 0 730 322 54 56 chr15 10312087 10312834 -75382920 + L2 LINE L2 2437 3182 -90 2381 75 0 3 chr15 10313261 10313555 -75382199 - AluY SINE Alu -18 293 1 357 206 134 21 chr15 10315538 10315635 -75380119 + MIR SINE MIR 85 192 -70 30 59 0 0 chr15 10315954 10316005 -75379749 + AT_rich Low_complexity Low_complexity 1 51 0 2295 71 0 4 chr15 10316131 10316432 -75379322 + AluY SINE Alu 1 300 0 190 318 112 9 chr15 10317921 10318028 -75377726 + MIR3 SINE MIR 69 186 -22 26 0 0 0 chr15 10318285 10318311 -75377443 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr15 10318410 10318433 -75377321 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr15 10319031 10319053 -75376701 + (A)n Simple_repeat Simple_repeat 1 22 0 2714 23 0 7 chr15 10319472 10319779 -75375975 - AluY SINE Alu -6 305 1 2458 58 0 10 chr15 10322421 10322716 -75373038 + AluY SINE Alu 1 292 -19 298 212 47 12 chr15 10322736 10322821 -75372933 - L1MA4 LINE L1 -5 6295 6208 1920 143 27 0 chr15 10324043 10324337 -75371417 - AluSx SINE Alu -10 302 1 2115 135 0 10 chr15 10324684 10324995 -75370759 - AluSg SINE Alu -2 308 1 309 284 61 20 chr15 10325326 10325474 -75370280 - L1MC4 LINE L1 -1124 6918 6765 281 257 115 158 chr15 10327224 10327407 -75368347 + MER5B DNA MER1_type 3 177 -1 2051 125 0 30 chr15 10329674 10329979 -75365775 + AluSx SINE Alu 1 296 -16 3673 89 105 0 chr15 10330727 10331253 -75364501 + LTR12 LTR ERV1 1 581 -133 251 316 90 57 chr15 10331985 10332317 -75363437 - L1ME LINE L1 -224 5897 5555 274 293 92 18 chr15 10332388 10332552 -75363202 - L1ME LINE L1 -2337 5471 5296 24 32 0 0 chr15 10332773 10332804 -75362950 + AT_rich Low_complexity Low_complexity 1 31 0 286 256 64 39 chr15 10333097 10333300 -75362454 - L1ME LINE L1 -1481 4665 4458 261 309 81 22 chr15 10334255 10334391 -75361363 + MIR SINE MIR 20 163 -99 987 284 179 20 chr15 10334397 10334837 -75360917 - L2 LINE L2 0 3313 2804 566 231 46 67 chr15 10334848 10334974 -75360780 + MER58C DNA MER1_type 10 137 -2283 189 0 0 0 chr15 10334974 10334995 -75360759 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 2069 119 3 23 chr15 10335001 10335304 -75360450 + AluSx SINE Alu 1 297 -15 566 231 46 67 chr15 10335304 10335365 -75360389 + MER58C DNA MER1_type 142 200 -15 1043 244 64 33 chr15 10335375 10335736 -75360018 - L2 LINE L2 -504 2810 2439 293 276 181 0 chr15 10336297 10336402 -75359352 + MIR SINE MIR 1 124 -138 303 271 37 56 chr15 10338589 10338696 -75357058 + L2 LINE L2 3160 3264 -8 52 17 0 0 chr15 10339004 10339063 -75356691 + AT_rich Low_complexity Low_complexity 1 59 0 24 0 0 0 chr15 10339335 10339359 -75356395 + AT_rich Low_complexity Low_complexity 1 24 0 457 332 128 8 chr15 10340152 10340535 -75355219 - L1ME4a LINE L1 -125 5996 5568 1752 172 0 7 chr15 10340535 10340825 -75354929 + AluJo SINE Alu 1 288 -24 325 301 53 38 chr15 10341382 10341515 -75354239 + L3 LINE CR1 937 1071 -506 265 271 123 12 chr15 10341515 10341685 -75354069 + MER113 DNA MER1_type? 2 190 -331 303 259 168 76 chr15 10341720 10341821 -75353933 + MER113 DNA MER1_type? 307 397 -124 2182 109 0 0 chr15 10341821 10342115 -75353639 + AluSq SINE Alu 1 294 -19 303 259 168 76 chr15 10342115 10342210 -75353544 + MER113 DNA MER1_type? 397 521 0 21 0 0 0 chr15 10342211 10342232 -75353522 + AT_rich Low_complexity Low_complexity 1 21 0 489 369 47 4 chr15 10342334 10342613 -75353141 + L3 LINE CR1 1241 1531 -46 326 254 23 77 chr15 10342613 10342743 -75353011 - LTR67 LTR ERVL -1 556 434 1992 259 160 62 chr15 10344413 10345676 -75350078 - HAL1 LINE L1 -1 2506 1368 249 33 0 0 chr15 10345676 10345706 -75350048 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 1992 259 160 62 chr15 10345706 10346626 -75349128 - HAL1 LINE L1 -1139 1368 77 2396 173 20 34 chr15 10347284 10347723 -75348031 - Tigger2a DNA MER2_type -1 433 1 185 333 0 16 chr15 10353642 10353705 -75342049 + MIR SINE MIR 49 110 -152 207 237 51 0 chr15 10353917 10353976 -75341778 + MIR SINE MIR 54 115 -93 392 242 200 32 chr15 10354309 10354499 -75341255 - MIR SINE MIR -38 224 3 1998 201 14 14 chr15 10354864 10355278 -75340476 + L1MD3 LINE L1 7582 7995 0 236 242 68 45 chr15 10357311 10357443 -75338311 + L2 LINE L2 3097 3231 -82 2485 59 0 7 chr15 10361998 10362302 -75333452 - AluY SINE Alu -9 302 1 187 182 0 0 chr15 10363265 10363298 -75332456 + MIR SINE MIR 46 78 -184 274 290 40 10 chr15 10363391 10363491 -75332263 + MIR SINE MIR 122 224 -38 393 312 153 0 chr15 10364802 10364959 -75330795 + MIR SINE MIR 29 209 -53 2243 119 0 6 chr15 10365078 10365389 -75330365 - AluSc SINE Alu 0 309 1 4185 34 0 2 chr15 10365806 10366309 -75329445 - L1PA5 LINE L1 -3 6151 5650 565 43 0 0 chr15 10366310 10366380 -75329374 + L1PA5 LINE L1 5565 5634 -520 1993 199 52 36 chr15 10366444 10366941 -75328813 - MER74A LTR ERVL -2 556 52 352 198 55 11 chr15 10367068 10367159 -75328595 + MER88 LTR ERVL 79 173 -291 * 1244 273 83 30 chr15 10367080 10367552 -75328202 - MER74B LTR ERVL -74 548 52 634 237 142 5 chr15 10369084 10369303 -75326451 + MIR SINE MIR 3 251 -11 1373 160 3 85 chr15 10369341 10369634 -75326120 + AluJb SINE Alu 42 310 -2 684 265 114 5 chr15 10373622 10373841 -75321913 - MIR SINE MIR -2 260 18 913 247 11 0 chr15 10375398 10375572 -75320182 + MER5A DNA MER1_type 5 180 -9 752 272 12 6 chr15 10375587 10375756 -75319998 + MER5B DNA MER1_type 8 177 -1 886 173 31 97 chr15 10375770 10376059 -75319695 + L1MB7 LINE L1 5915 6184 0 331 141 70 0 chr15 10376096 10376167 -75319587 - L1MB7 LINE L1 0 6184 6109 1216 221 0 9 chr15 10376206 10376437 -75319317 - AluJb SINE Alu -83 229 1 1239 194 108 60 chr15 10376437 10376727 -75319027 - L1MB8 LINE L1 -63 6115 5790 219 69 0 0 chr15 10376727 10376756 -75318998 + (TG)n Simple_repeat Simple_repeat 2 30 0 1239 194 108 60 chr15 10376756 10376965 -75318789 - L1MB8 LINE L1 -388 5790 5592 1762 143 124 0 chr15 10376970 10377341 -75318413 - L1MB4 LINE L1 -1 6990 6574 5203 218 40 26 chr15 10377347 10379092 -75316662 - L1MB4 LINE L1 -562 6415 4656 1318 257 54 37 chr15 10379095 10380066 -75315688 - L1MB4 LINE L1 -3585 3372 2431 328 287 160 40 chr15 10380072 10380222 -75315532 - L1MB4 LINE L1 -5737 1118 951 264 257 49 121 chr15 10380244 10380365 -75315389 - L1MB4 LINE L1 -6595 264 136 288 0 0 0 chr15 10380365 10380397 -75315357 + (CA)n Simple_repeat Simple_repeat 2 33 0 2280 112 3 0 chr15 10380399 10380704 -75315050 + AluSp SINE Alu 1 306 -7 264 257 49 121 chr15 10380704 10380844 -75314910 - L1MB4 LINE L1 -6724 135 19 280 331 62 28 chr15 10381717 10381895 -75313859 - MIR3 SINE MIR -13 195 12 327 270 150 0 chr15 10382185 10382285 -75313469 - L2 LINE L2 -6 3266 3152 18377 129 14 4 chr15 10382508 10386485 -75309269 + L1PA10 LINE L1 2160 6168 0 23 54 0 0 chr15 10387202 10387239 -75308515 + AT_rich Low_complexity Low_complexity 1 37 0 324 250 0 40 chr15 10388137 10388213 -75307541 - MER5B DNA MER1_type -2 176 104 189 253 74 84 chr15 10388219 10388314 -75307440 + MER5B DNA MER1_type 29 122 -56 183 336 43 17 chr15 10389556 10389672 -75306082 + MIR3 SINE MIR 75 193 -15 593 264 137 13 chr15 10390226 10390453 -75305301 - MIR SINE MIR 0 262 8 775 236 62 0 chr15 10390760 10390938 -75304816 - MER5A DNA MER1_type 0 189 1 405 327 89 6 chr15 10391138 10391306 -75304448 + L2 LINE L2 3132 3313 0 1749 161 36 30 chr15 10391338 10391471 -75304283 + AluJo SINE Alu 1 132 -180 2396 100 0 3 chr15 10391471 10391781 -75303973 + AluSq SINE Alu 2 310 -3 1749 161 36 30 chr15 10391781 10391951 -75303803 + AluJo SINE Alu 132 306 -6 236 156 18 193 chr15 10394362 10394471 -75301283 + MIR3 SINE MIR 116 205 -3 268 288 0 25 chr15 10395199 10395279 -75300475 - MIR SINE MIR -99 163 86 510 314 38 51 chr15 10395781 10396017 -75299737 - MIR SINE MIR 0 262 30 4953 153 18 17 chr15 10396161 10397594 -75298160 - L1PB4 LINE L1 0 6156 4722 2451 120 58 23 chr15 10397594 10398027 -75297727 - LTR7 LTR ERV1 0 450 3 4953 153 18 17 chr15 10398027 10398375 -75297379 - L1PB4 LINE L1 -1434 4722 4376 438 299 114 78 chr15 10398887 10399158 -75296596 + L2 LINE L2 2992 3272 0 288 242 24 65 chr15 10399810 10399934 -75295820 - MLT1J2 LTR MaLR -3 447 329 265 207 0 198 chr15 10400020 10400136 -75295618 - MER5A DNA MER1_type -84 105 13 398 246 90 8 chr15 10400230 10400352 -75295402 - MLT1J2 LTR MaLR -315 135 4 1546 130 159 88 chr15 10400478 10400855 -75294899 - MER4A LTR ERV1 0 664 261 429 156 89 0 chr15 10400855 10400945 -75294809 - MER4A LTR ERV1 -566 98 1 14750 99 52 29 chr15 10400954 10403567 -75292187 - MER4A-int LTR ERV1 0 6598 3924 2436 112 87 26 chr15 10403585 10404113 -75291641 - MER4A-int LTR ERV1 -3302 3296 2737 310 214 0 14 chr15 10404113 10404183 -75291571 + LTR8 LTR ERV1 1 69 -622 1234 77 68 197 chr15 10404223 10404416 -75291338 - L1MA5A LINE L1 -2 6295 6093 400 108 31 0 chr15 10404416 10404481 -75291273 + MADE1 DNA Mariner 1 67 -13 1234 77 68 197 chr15 10404481 10404574 -75291180 - L1MA5A LINE L1 -204 6093 5990 890 161 92 0 chr15 10404574 10404748 -75291006 + LTR8 LTR ERV1 68 257 -434 3613 81 30 95 chr15 10404748 10405029 -75290725 - MER4A-int LTR ERV1 -4103 2495 2197 2185 77 17 30 chr15 10405029 10405327 -75290427 + AluSg SINE Alu 1 294 -16 3613 81 30 95 chr15 10405327 10405821 -75289933 - MER4A-int LTR ERV1 -4401 2197 1771 1145 86 74 149 chr15 10405819 10406135 -75289619 - MER4A-int LTR ERV1 -4266 1284 503 * 351 219 16 31 chr15 10406122 10406250 -75289504 - MER4A-int LTR ERV1 -5997 601 476 * 2555 81 70 42 chr15 10406407 10406634 -75289120 - MER4A-int LTR ERV1 -6156 442 223 2279 78 0 7 chr15 10406634 10406928 -75288826 + AluY SINE Alu 1 292 -19 2555 81 70 42 chr15 10406928 10407130 -75288624 - MER4A-int LTR ERV1 -6375 223 1 1495 144 25 76 chr15 10407133 10407495 -75288259 - MER4A LTR ERV1 0 664 263 492 122 89 0 chr15 10407495 10407585 -75288169 - MER4A LTR ERV1 -566 98 1 184 379 0 0 chr15 10408931 10408997 -75286757 - MIR SINE MIR -190 72 7 1164 71 137 11 chr15 10409708 10409891 -75285863 - MER4A-int LTR ERV1 -6392 206 1 1496 144 25 76 chr15 10409894 10410256 -75285498 - MER4A LTR ERV1 0 664 263 492 122 89 0 chr15 10410256 10410346 -75285408 - MER4A LTR ERV1 -566 98 1 784 211 158 39 chr15 10411360 10411639 -75284115 - MLT1D LTR MaLR -193 312 1 214 391 0 0 chr15 10411639 10411731 -75284023 + L2 LINE L2 2575 2666 -648 206 143 0 71 chr15 10411840 10411882 -75283872 - L2 LINE L2 -11 3302 3264 * 787 262 17 42 chr15 10411855 10412092 -75283662 - MIR SINE MIR -17 245 15 435 307 68 6 chr15 10412227 10412403 -75283351 + MIR SINE MIR 68 254 -8 941 107 0 8 chr15 10412499 10412630 -75283124 - AluY SINE Alu -25 286 157 822 249 70 0 chr15 10414540 10414781 -75280973 - MIR SINE MIR -3 259 2 280 298 155 10 chr15 10414843 10415019 -75280735 - MIR SINE MIR -52 210 16 673 151 0 0 chr15 10416007 10416113 -75279641 + AluJb SINE Alu 2 107 -205 1823 147 11 0 chr15 10416114 10416380 -75279374 + AluSx SINE Alu 22 290 -22 296 273 55 27 chr15 10417666 10417776 -75277978 + MIR SINE MIR 52 164 -98 2321 119 3 0 chr15 10420317 10420628 -75275126 - AluSx SINE Alu 0 312 1 1464 176 35 4 chr15 10423124 10423379 -75272375 - AluJo SINE Alu 0 312 50 323 273 95 11 chr15 10424087 10424245 -75271509 - MIR SINE MIR -62 146 11 257 338 78 0 chr15 10426340 10426482 -75269272 + L2 LINE L2 3117 3269 -3 2115 147 35 0 chr15 10426614 10426962 -75268792 - MER46B DNA MER2_type -1 235 1 1952 159 0 0 chr15 10427312 10427601 -75268153 - AluSx SINE Alu -9 303 15 2404 79 7 0 chr15 10428011 10428314 -75267440 - AluSp SINE Alu -8 305 1 534 271 132 16 chr15 10429284 10429587 -75266167 - L1ME4a LINE L1 -9 6112 5775 921 228 47 67 chr15 10429706 10430048 -75265706 + MER46C DNA MER2_type 4 338 0 2381 69 7 0 chr15 10432312 10432601 -75263153 + AluY SINE Alu 1 291 -20 22 0 0 0 chr15 10432865 10432887 -75262867 + AT_rich Low_complexity Low_complexity 1 22 0 509 285 225 26 chr15 10436536 10437136 -75258618 + L2 LINE L2 2574 3308 -5 1827 128 207 11 chr15 10439477 10439835 -75255919 - MSTA LTR MaLR 0 428 1 416 226 185 46 chr15 10439978 10440240 -75255514 - MER34 LTR ERV1 0 739 333 292 214 88 34 chr15 10440343 10440475 -75255279 - MER34C LTR ERV1 -415 128 1 6199 111 90 7 chr15 10440667 10441590 -75254164 + THE1-int LTR MaLR 121 1120 -460 539 268 81 51 chr15 10441590 10441825 -75253929 - Charlie8 DNA MER1_type -2175 242 1 226 318 56 56 chr15 10441845 10441971 -75253783 - L2 LINE L2 -176 3096 2971 239 342 154 23 chr15 10442206 10442648 -75253106 - L2 LINE L2 -590 2724 2225 1064 227 18 0 chr15 10444695 10444915 -75250839 + MER58A DNA MER1_type 1 224 0 2283 107 3 7 chr15 10447853 10448161 -75247593 - AluSx SINE Alu -5 307 1 536 306 40 0 chr15 10449021 10449194 -75246560 + MIR SINE MIR 13 192 -70 211 294 11 54 chr15 10451084 10451176 -75244578 + MIR3 SINE MIR 105 192 -16 1859 23 0 0 chr15 10451613 10451827 -75243927 - L1PA4 LINE L1 -1 6154 5941 259 178 297 10 chr15 10452054 10452155 -75243599 + MER5A DNA MER1_type 55 184 -5 186 298 18 0 chr15 10452543 10452600 -75243154 - L2 LINE L2 -533 2781 2724 541 192 0 31 chr15 10454450 10454580 -75241174 - L1MA9 LINE L1 -30 6282 6157 1012 144 0 0 chr15 10455570 10455716 -75240038 + FRAM SINE Alu 1 146 -30 29 0 0 0 chr15 10455723 10455752 -75240002 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr15 10458693 10458714 -75237040 + (A)n Simple_repeat Simple_repeat 1 21 0 316 293 0 12 chr15 10458931 10459013 -75236741 - MIR SINE MIR -144 118 38 2439 83 0 0 chr15 10460801 10461102 -75234652 + AluSc SINE Alu 1 301 -8 605 246 163 5 chr15 10461104 10461307 -75234447 + MIR SINE MIR 23 257 -5 1088 198 12 63 chr15 10461307 10461559 -75234195 + MER8 DNA MER2_type 1 239 0 230 321 80 9 chr15 10462170 10462282 -75233472 - MIR3 SINE MIR -7 201 82 180 250 48 36 chr15 10463817 10463901 -75231853 - L2 LINE L2 0 3313 3229 2240 95 3 7 chr15 10464043 10464337 -75231417 + AluSc SINE Alu 1 293 -16 385 248 87 27 chr15 10464472 10464621 -75231133 - MER103 DNA DNA -6 160 3 1732 183 17 7 chr15 10464885 10465180 -75230574 + AluJb SINE Alu 1 298 -14 217 204 0 0 chr15 10465346 10465390 -75230364 - L2 LINE L2 -553 2761 2718 26 0 0 0 chr15 10466073 10466099 -75229655 + AT_rich Low_complexity Low_complexity 1 26 0 333 298 35 0 chr15 10466985 10467099 -75228655 + L2 LINE L2 3184 3301 -12 1708 180 153 54 chr15 10467142 10467658 -75228096 - MLT1E2 LTR MaLR -8 618 52 1635 259 64 23 chr15 10468676 10469162 -75226592 - MLT1E LTR MaLR 0 593 88 188 204 74 0 chr15 10470862 10470916 -75224838 + L2 LINE L2 2906 2963 -351 373 277 84 25 chr15 10471067 10471269 -75224485 + MIR SINE MIR 46 259 -3 1397 119 0 89 chr15 10471734 10471970 -75223784 - MER1B DNA MER1_type 0 339 125 197 241 48 24 chr15 10473278 10473361 -75222393 + MIR SINE MIR 178 262 0 203 189 0 0 chr15 10474804 10474841 -75220913 + (TA)n Simple_repeat Simple_repeat 2 38 0 277 104 0 0 chr15 10474841 10474889 -75220865 + LTR66 LTR ERVL 394 441 -169 276 350 8 0 chr15 10474899 10475016 -75220738 + MIR SINE MIR 134 251 -11 364 307 123 0 chr15 10475481 10475660 -75220094 + MIR SINE MIR 49 249 -13 766 188 34 74 chr15 10476195 10476271 -75219483 - MER5A DNA MER1_type 0 189 112 1892 161 0 3 chr15 10476271 10476562 -75219192 - AluSg SINE Alu -20 290 1 766 188 34 74 chr15 10476562 10476661 -75219093 - MER5A DNA MER1_type -77 112 21 1824 204 70 31 chr15 10477546 10478035 -75217719 + Charlie4a DNA MER1_type 1 508 0 2204 118 0 3 chr15 10478040 10478337 -75217417 + AluSg SINE Alu 1 296 -14 1391 50 0 96 chr15 10478375 10478603 -75217151 + AluY SINE Alu 101 309 0 507 323 71 28 chr15 10478722 10479217 -75216537 + L1ME4a LINE L1 5305 5820 -301 413 179 163 0 chr15 10479328 10479451 -75216303 + L1ME4a LINE L1 5976 6118 -3 320 123 14 0 chr15 10480404 10480477 -75215277 + (TG)n Simple_repeat Simple_repeat 2 75 0 180 111 0 0 chr15 10481000 10481027 -75214727 + (GGA)n Simple_repeat Simple_repeat 1 27 0 283 260 104 0 chr15 10481967 10482063 -75213691 - MIR SINE MIR -108 154 49 289 342 43 35 chr15 10482216 10482447 -75213307 - MIR SINE MIR -10 252 20 2067 130 135 23 chr15 10483451 10483836 -75211918 + MSTA LTR MaLR 1 428 0 302 191 191 9 chr15 10484864 10484969 -75210785 - MIR SINE MIR -62 146 23 197 349 0 0 chr15 10485015 10485078 -75210676 - MIR SINE MIR -108 154 92 477 262 8 16 chr15 10485278 10485404 -75210350 + MIR SINE MIR 39 163 -99 812 139 151 23 chr15 10486533 10486705 -75209049 - MLT1D LTR MaLR -4 501 308 532 146 48 68 chr15 10486705 10486808 -75208946 - MLT1D LTR MaLR -403 102 2 2528 64 0 0 chr15 10488260 10488557 -75207197 - AluY SINE Alu -14 297 1 5750 148 32 28 chr15 10488780 10489797 -75205957 + L1PA6 LINE L1 11 1032 -5114 * 29198 64 12 19 chr15 10489791 10493555 -75202199 + L1PA6 LINE L1 1565 5293 -861 2551 53 3 3 chr15 10493555 10493855 -75201899 + AluY SINE Alu 1 300 -11 29198 64 12 19 chr15 10493855 10494709 -75201045 + L1PA6 LINE L1 5293 6151 -3 252 204 0 0 chr15 10494746 10494800 -75200954 - MER4-int LTR ERV1 -5433 1165 1112 5379 189 105 14 chr15 10496043 10497364 -75198390 - Charlie1a DNA MER1_type -2 1453 12 2427 64 7 0 chr15 10499577 10499875 -75195879 - AluY SINE Alu -11 300 1 1549 179 7 37 chr15 10501124 10501420 -75194334 - AluJo SINE Alu -19 293 7 202 373 9 18 chr15 10502316 10502426 -75193328 - MIR3 SINE MIR -11 197 89 198 0 0 0 chr15 10504546 10504568 -75191186 + (TCTG)n Simple_repeat Simple_repeat 1 22 0 660 119 34 17 chr15 10504568 10504744 -75191010 + CT-rich Low_complexity Low_complexity 2 180 0 417 332 81 9 chr15 10507338 10507549 -75188205 - MIR SINE MIR -32 230 5 382 306 202 31 chr15 10507576 10508220 -75187534 - L2 LINE L2 -559 2755 2002 185 244 0 0 chr15 10508523 10508568 -75187186 - L2 LINE L2 -4 3309 3265 1816 158 68 50 chr15 10508634 10509015 -75186739 - MLT1B LTR MaLR -2 388 1 2203 103 0 39 chr15 10509329 10509640 -75186114 + AluSx SINE Alu 11 309 -3 222 171 0 0 chr15 10510387 10510428 -75185326 + (CA)n Simple_repeat Simple_repeat 2 42 0 330 26 0 0 chr15 10510428 10510467 -75185287 + (TC)n Simple_repeat Simple_repeat 1 39 0 288 146 0 0 chr15 10510707 10510755 -75184999 - L2 LINE L2 -4 3309 3262 21 0 0 0 chr15 10511466 10511487 -75184267 + AT_rich Low_complexity Low_complexity 1 21 0 2270 155 16 25 chr15 10511543 10512222 -75183532 - L1MB3 LINE L1 -4 6179 5450 183 80 0 0 chr15 10512755 10512780 -75182974 + (TGGA)n Simple_repeat Simple_repeat 1 25 0 1826 162 223 39 chr15 10514007 10514470 -75181284 - LTR10A LTR ERV1 -61 548 1 265 359 0 76 chr15 10514500 10514698 -75181056 - L2 LINE L2 -91 3181 2999 1630 184 114 11 chr15 10514778 10515137 -75180617 + MSTD LTR MaLR 1 396 0 1485 151 0 37 chr15 10515424 10515669 -75180085 - MSTB LTR MaLR 0 426 191 1080 131 0 0 chr15 10515671 10515824 -75179930 - AluJb SINE Alu -8 304 152 6293 167 40 23 chr15 10515824 10516567 -75179187 - MSTA-int LTR MaLR -502 1149 379 2617 68 0 0 chr15 10516567 10516874 -75178880 - AluY SINE Alu -4 307 1 6293 167 40 23 chr15 10516874 10517260 -75178494 - MSTA-int LTR MaLR -1272 379 1 2301 170 70 0 chr15 10517261 10517660 -75178094 - MSTA LTR MaLR -1 427 1 578 269 39 14 chr15 10518072 10518270 -75177484 + MIR SINE MIR 18 219 -43 210 160 69 30 chr15 10518522 10518653 -75177101 + (ATGGTG)n Simple_repeat Simple_repeat 1 136 0 221 180 15 45 chr15 10518727 10518865 -75176889 + (ATGGTG)n Simple_repeat Simple_repeat 1 133 0 864 240 47 35 chr15 10518867 10518970 -75176784 - MIR SINE MIR -1 261 161 2369 123 19 25 chr15 10518970 10519335 -75176419 - MLT1A1 LTR MaLR -2 363 1 864 240 47 35 chr15 10519335 10519489 -75176265 - MIR SINE MIR -101 161 1 1440 174 15 120 chr15 10520889 10521230 -75174524 - MLT1A1 LTR MaLR 0 365 72 2090 154 95 3 chr15 10521230 10521620 -75174134 + MSTB LTR MaLR 1 426 0 1440 174 15 120 chr15 10521620 10521686 -75174068 - MLT1A1 LTR MaLR -293 72 1 1122 314 24 22 chr15 10522494 10522952 -75172802 + L2 LINE L2 2195 2653 -661 343 343 7 29 chr15 10523676 10523816 -75171938 - L2 LINE L2 0 3272 3136 21 0 0 0 chr15 10524867 10524888 -75170866 + AT_rich Low_complexity Low_complexity 1 21 0 1939 136 0 40 chr15 10525917 10526218 -75169536 + AluJb SINE Alu 5 293 -19 2444 220 69 6 chr15 10526289 10526808 -75168946 + MLT1F1 LTR MaLR 8 559 -8 631 108 10 39 chr15 10527823 10527925 -75167829 + HY3 scRNA scRNA 1 99 -2 207 0 0 0 chr15 10528685 10528708 -75167046 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 306 280 160 40 chr15 10528933 10529083 -75166671 - MIR3 SINE MIR -19 189 22 450 53 0 0 chr15 10530484 10530541 -75165213 + (CA)n Simple_repeat Simple_repeat 2 58 0 2363 72 0 56 chr15 10531007 10531327 -75164427 + AluY SINE Alu 1 302 -9 1160 189 62 8 chr15 10532022 10532266 -75163488 + MER63 DNA MER1_type 641 897 -163 2053 228 86 4 chr15 10533301 10533837 -75161917 + MER63 DNA MER1_type 481 1060 0 1349 163 40 0 chr15 10533839 10534066 -75161688 - MER46A DNA MER2_type 0 236 1 753 178 51 51 chr15 10534608 10534765 -75160989 - MER20 DNA MER1_type -55 164 8 23 86 0 0 chr15 10535400 10535458 -75160296 + AT_rich Low_complexity Low_complexity 1 58 0 23 33 0 0 chr15 10535508 10535538 -75160216 + AT_rich Low_complexity Low_complexity 1 30 0 2473 59 0 23 chr15 10537431 10537734 -75158020 + AluY SINE Alu 1 296 -15 591 274 22 28 chr15 10537987 10538166 -75157588 + MER5B DNA MER1_type 1 178 0 5692 127 24 3 chr15 10538366 10539250 -75156504 + L1MC1 LINE L1 5432 6333 0 2298 112 0 3 chr15 10540010 10540322 -75155432 - AluSx SINE Alu -1 311 1 2151 119 0 49 chr15 10542062 10542390 -75153364 - AluSx SINE Alu 0 312 1 794 234 0 18 chr15 10542420 10542591 -75153163 - AluJb SINE Alu -8 304 137 366 314 58 5 chr15 10543981 10544169 -75151585 - MIR SINE MIR 0 262 65 2349 77 0 3 chr15 10546930 10547245 -75148509 - AluY SINE Alu 0 314 1 855 280 0 4 chr15 10548653 10548878 -75146876 - MER58A DNA MER1_type 0 224 1 373 288 70 101 chr15 10549054 10549370 -75146384 + L2 LINE L2 2577 2882 -432 216 186 43 161 chr15 10549573 10549734 -75146020 + L2 LINE L2 3078 3219 -94 519 288 85 54 chr15 10549904 10550410 -75145344 - L2 LINE L2 -195 3077 2560 192 40 0 0 chr15 10550413 10550438 -75145316 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 237 313 210 9 chr15 10550567 10550800 -75144954 - L2 LINE L2 -976 2338 2059 255 274 0 60 chr15 10550836 10550920 -75144834 + L2 LINE L2 3188 3266 -6 1931 160 0 7 chr15 10551345 10551633 -75144121 - AluSx SINE Alu -26 286 1 21 0 0 0 chr15 10551718 10551739 -75144015 + AT_rich Low_complexity Low_complexity 1 21 0 267 111 0 0 chr15 10551897 10551942 -75143812 - AluSp/q SINE Alu -1 302 258 2147 134 0 3 chr15 10551942 10552247 -75143507 - AluSx SINE Alu -8 304 1 1986 166 33 0 chr15 10553311 10553642 -75142112 + MER2 DNA MER2_type 2 343 -1 11142 76 4 24 chr15 10555251 10557592 -75138162 - L1PA7 LINE L1 -3 6151 3851 1678 99 5 5 chr15 10558457 10558678 -75137076 + AluSg/x SINE Alu 70 290 -19 758 251 138 10 chr15 10558678 10559118 -75136636 + L2 LINE L2 2534 3074 -239 205 219 0 0 chr15 10559119 10559160 -75136594 + L2 LINE L2 2503 2543 -771 536 241 62 0 chr15 10560572 10560734 -75135020 + L1ME LINE L1 5177 5348 -798 796 161 0 29 chr15 10560791 10560928 -75134826 - FLAM_C SINE Alu 0 133 1 1169 229 172 3 chr15 10560950 10561304 -75134450 + L1ME LINE L1 5386 5799 -371 2410 76 0 3 chr15 10561735 10562039 -75133715 - AluY SINE Alu -8 303 1 2282 112 0 0 chr15 10563308 10563603 -75132151 - AluSx SINE Alu -17 295 1 665 105 0 129 chr15 10563824 10563948 -75131806 + FRAM SINE Alu 57 164 -12 430 268 21 21 chr15 10564590 10564732 -75131022 - MLT1J LTR MaLR -369 142 1 31913 105 16 59 chr15 10565512 10571283 -75124471 + L1PA7 LINE L1 1 5453 -701 2240 111 0 7 chr15 10571283 10571589 -75124165 + AluSg SINE Alu 1 304 -6 31913 105 16 59 chr15 10571589 10572262 -75123492 + L1PA7 LINE L1 5453 6154 0 2291 114 3 0 chr15 10572424 10572723 -75123031 + AluSg SINE Alu 1 300 -10 2523 84 0 0 chr15 10573023 10573333 -75122421 + AluSx SINE Alu 1 310 -2 215 300 0 0 chr15 10573565 10573635 -75122119 - MIR SINE MIR -108 154 85 2245 121 0 6 chr15 10573671 10573985 -75121769 + AluSx SINE Alu 1 312 0 180 310 11 46 chr15 10574848 10574935 -75120819 - MIR SINE MIR -123 139 56 2025 124 18 0 chr15 10577344 10577627 -75118127 + AluJb SINE Alu 1 288 -24 386 185 0 0 chr15 10577746 10577811 -75117943 + FLAM_A SINE Alu 69 133 0 232 27 54 0 chr15 10578031 10578068 -75117686 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1547 167 65 4 chr15 10578142 10578418 -75117336 + AluJb SINE Alu 1 293 -19 229 286 143 29 chr15 10578450 10578590 -75117164 + L3 LINE CR1 341 496 -1081 2315 89 0 0 chr15 10578926 10579217 -75116537 + AluSc SINE Alu 1 291 -18 222 37 0 0 chr15 10579966 10579993 -75115761 + (GAA)n Simple_repeat Simple_repeat 2 28 0 604 234 8 0 chr15 10583497 10583621 -75112133 + FRAM SINE Alu 34 158 -18 2252 95 0 0 chr15 10584309 10584619 -75111135 + AluSx SINE Alu 1 310 0 329 173 0 0 chr15 10585636 10585717 -75110037 - AluS SINE Alu 0 311 231 2346 63 0 30 chr15 10586142 10586444 -75109310 + AluY SINE Alu 1 293 -18 193 333 27 41 chr15 10586873 10587020 -75108734 + MIR3 SINE MIR 36 180 -28 1114 192 28 0 chr15 10587311 10587525 -75108229 + MER58A DNA MER1_type 4 223 -1 906 226 27 21 chr15 10589534 10589720 -75106034 - MER5A DNA MER1_type -2 187 1 200 29 0 59 chr15 10593942 10593976 -75101778 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 844 256 135 27 chr15 10595194 10595826 -75099928 - L2 LINE L2 -4 3309 2600 725 173 119 55 chr15 10595835 10596037 -75099717 + L1MB5 LINE L1 5947 6161 -13 315 0 0 0 chr15 10596048 10596083 -75099671 + (TA)n Simple_repeat Simple_repeat 1 35 0 2129 109 3 31 chr15 10596086 10596407 -75099347 - AluSx SINE Alu 0 312 1 2490 71 3 10 chr15 10596407 10596716 -75099038 - AluY SINE Alu -4 307 1 279 0 0 0 chr15 10596718 10596749 -75099005 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4816 250 123 25 chr15 10596756 10597785 -75097969 - L2 LINE L2 -713 2601 1674 198 0 0 0 chr15 10597785 10597807 -75097947 + (CA)n Simple_repeat Simple_repeat 2 23 0 4816 250 123 25 chr15 10597807 10598614 -75097140 - L2 LINE L2 -1640 1674 586 2113 235 73 93 chr15 10599246 10600049 -75095705 - MER21B LTR ERV1 -64 799 13 741 131 31 0 chr15 10600348 10600668 -75095086 + (TA)n Simple_repeat Simple_repeat 1 330 0 204 347 0 0 chr15 10601195 10601270 -75094484 - L3 LINE CR1 -4 1573 1499 362 331 68 37 chr15 10601406 10601702 -75094052 - L3 LINE CR1 -234 1343 1039 2214 116 3 25 chr15 10601764 10602082 -75093672 - AluSx SINE Alu -1 311 1 1130 68 0 0 chr15 10602086 10602219 -75093535 - AluSq/x SINE Alu -180 133 1 2392 94 3 0 chr15 10602513 10602822 -75092932 - AluSx SINE Alu -2 310 1 558 184 10 0 chr15 10602958 10603056 -75092698 - L1PB4 LINE L1 -5 6151 6053 2830 154 30 20 chr15 10603056 10603557 -75092197 + L1PB4 LINE L1 5560 6065 -91 918 256 61 104 chr15 10604316 10604473 -75091281 - MLT1J LTR MaLR -6 505 343 2219 114 0 13 chr15 10604473 10604780 -75090974 - AluSx SINE Alu -9 303 1 918 256 61 104 chr15 10604780 10605150 -75090604 - MLT1J LTR MaLR -168 343 1 3260 191 60 76 chr15 10605482 10606301 -75089453 + MER21B LTR ERV1 1 806 -57 5160 151 19 22 chr15 10607308 10608214 -75087540 - MER4D LTR ERV1 0 903 1 2146 114 7 7 chr15 10609906 10610204 -75085550 - AluSx SINE Alu -14 298 1 184 307 102 0 chr15 10610832 10610920 -75084834 + MIR3 SINE MIR 89 185 -23 2621 59 0 0 chr15 10611859 10612166 -75083588 - AluY SINE Alu -4 307 1 188 195 24 37 chr15 10612278 10612360 -75083394 + CT-rich Low_complexity Low_complexity 3 83 0 742 160 24 0 chr15 10612767 10612892 -75082862 + FLAM_C SINE Alu 5 132 -1 1833 154 17 7 chr15 10613137 10613436 -75082318 - AluJo SINE Alu -6 306 5 245 221 44 44 chr15 10614636 10614704 -75081050 + MIR SINE MIR 73 140 -122 1062 123 0 59 chr15 10616005 10616192 -75079562 - AluSg/x SINE Alu 0 312 137 27 0 0 0 chr15 10617580 10617607 -75078147 + AT_rich Low_complexity Low_complexity 1 27 0 2440 63 0 20 chr15 10617616 10617917 -75077837 + AluY SINE Alu 1 295 -16 264 30 0 0 chr15 10617942 10617975 -75077779 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 286 318 0 0 chr15 10618101 10618189 -75077565 + L3b LINE CR1 1375 1462 -121 497 288 51 68 chr15 10618629 10619160 -75076594 + L1MEd LINE L1 657 1178 -4941 2298 102 7 13 chr15 10621012 10621315 -75074439 + AluSx SINE Alu 2 302 -10 1224 116 0 0 chr15 10621317 10621481 -75074273 + AluSg/x SINE Alu 136 299 -13 267 286 17 17 chr15 10624007 10624126 -75071628 + CT-rich Low_complexity Low_complexity 1 119 0 2255 89 3 0 chr15 10625237 10625529 -75070225 + AluSq SINE Alu 1 293 -20 2188 108 3 7 chr15 10625785 10626118 -75069636 + AluSq SINE Alu 1 332 0 216 97 0 0 chr15 10628398 10628429 -75067325 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 367 286 18 9 chr15 10628430 10628542 -75067212 - L2 LINE L2 -12 3301 3189 24 32 0 0 chr15 10628936 10628967 -75066787 + AT_rich Low_complexity Low_complexity 1 31 0 2189 116 0 6 chr15 10632119 10632430 -75063324 - AluSq SINE Alu -4 309 1 440 256 74 0 chr15 10634177 10634298 -75061456 + MIR SINE MIR 58 187 -75 15220 126 31 11 chr15 10634309 10635863 -75059891 + Tigger1 DNA MER2_type 1 1621 -797 2440 63 3 16 chr15 10635863 10636166 -75059588 + AluY SINE Alu 1 299 -12 15220 126 31 11 chr15 10636166 10636971 -75058783 + Tigger1 DNA MER2_type 1621 2408 -10 189 346 29 19 chr15 10638284 10638388 -75057366 - L2 LINE L2 -50 3222 3118 2100 128 3 3 chr15 10638408 10638713 -75057041 + AluSx SINE Alu 1 305 -7 2328 87 0 7 chr15 10638769 10639069 -75056685 + AluSx SINE Alu 1 298 -14 2200 101 27 13 chr15 10639120 10639418 -75056336 + AluSq SINE Alu 1 302 -11 1875 168 0 7 chr15 10640397 10640683 -75055071 + AluSx SINE Alu 1 284 -28 351 0 0 0 chr15 10640683 10640722 -75055032 + (CA)n Simple_repeat Simple_repeat 2 40 0 304 221 13 13 chr15 10641846 10641923 -75053831 + CT-rich Low_complexity Low_complexity 6 82 0 472 282 13 13 chr15 10642269 10642418 -75053336 + MIR3 SINE MIR 58 206 -2 313 215 43 21 chr15 10642503 10642596 -75053158 - L1M4 LINE L1 -2947 3199 3105 325 250 27 36 chr15 10646145 10646257 -75049497 - L2 LINE L2 0 3272 3162 249 276 0 0 chr15 10646397 10646455 -75049299 + L2 LINE L2 3225 3282 -31 360 308 171 31 chr15 10646469 10646935 -75048819 - L2 LINE L2 -32 3281 2755 2180 132 3 0 chr15 10647467 10647777 -75047977 + AluJb SINE Alu 1 311 -1 191 309 32 11 chr15 10648008 10648102 -75047652 - MIR SINE MIR -16 246 151 2497 66 0 3 chr15 10649569 10649872 -75045882 + AluY SINE Alu 1 302 -9 209 289 0 0 chr15 10650349 10650394 -75045360 - L2 LINE L2 -14 3258 3214 270 347 110 23 chr15 10650810 10650983 -75044771 - L2 LINE L2 -955 2359 2172 303 277 128 14 chr15 10651706 10651778 -75043976 + MER5A DNA MER1_type 19 81 -108 2218 114 3 3 chr15 10651778 10652085 -75043669 - AluSq SINE Alu -6 307 1 303 277 128 14 chr15 10652085 10652160 -75043594 + MER5A DNA MER1_type 81 183 -6 1141 224 91 100 chr15 10652359 10652935 -75042819 - MLT1H1 LTR MaLR -2 553 5 312 270 305 6 chr15 10653233 10653407 -75042347 + MIR SINE MIR 19 244 -18 2620 58 0 3 chr15 10655358 10655667 -75040087 - AluY SINE Alu -3 308 1 428 273 111 6 chr15 10655815 10656029 -75039725 + MIR SINE MIR 2 241 -21 2325 91 0 10 chr15 10656630 10656928 -75038826 + AluSg SINE Alu 1 295 -15 311 259 118 0 chr15 10656929 10657064 -75038690 + L1ME3A LINE L1 5626 5776 -345 1026 244 167 26 chr15 10657493 10657984 -75037770 - L1ME3A LINE L1 -223 5947 5388 21 36 0 0 chr15 10658539 10658567 -75037187 + AT_rich Low_complexity Low_complexity 1 28 0 2232 110 0 13 chr15 10660443 10660742 -75035012 + AluSg SINE Alu 1 295 -15 2300 80 0 20 chr15 10661736 10662035 -75033719 - AluSx SINE Alu -19 293 1 436 258 50 3 chr15 10662568 10662729 -75033025 - MIR SINE MIR -63 145 19 2225 75 4 7 chr15 10663182 10663490 -75032264 - AluSg SINE Alu 0 307 1 1424 181 19 98 chr15 10663663 10664083 -75031671 - MLT1B LTR MaLR -3 387 1 2238 101 3 10 chr15 10664742 10665039 -75030715 - AluSp SINE Alu -18 295 1 1097 282 153 26 chr15 10667790 10668286 -75027468 + L2 LINE L2 1402 1960 -1354 749 94 21 0 chr15 10668359 10668455 -75027299 - AluS SINE Alu -214 99 2 321 213 16 0 chr15 10668460 10668521 -75027233 + L2 LINE L2 3237 3298 -15 1376 163 43 25 chr15 10668764 10669040 -75026714 - AluJb SINE Alu -31 281 1 2016 120 20 20 chr15 10669149 10669450 -75026304 - AluSx SINE Alu -11 301 1 2184 93 52 0 chr15 10674773 10674891 -75020863 + AluY SINE Alu 1 111 -200 269 26 26 0 chr15 10674891 10674929 -75020825 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2184 93 52 0 chr15 10674929 10675100 -75020654 + AluY SINE Alu 111 305 -6 624 236 224 24 chr15 10675194 10675440 -75020314 + L1ME3A LINE L1 5876 6170 0 353 174 73 64 chr15 10675696 10675805 -75019949 - MER5B DNA MER1_type -68 110 1 507 294 289 7 chr15 10676384 10676796 -75018958 + L2 LINE L2 2115 2642 -672 418 341 29 65 chr15 10676945 10677191 -75018563 + L2 LINE L2 3000 3236 -36 23 33 0 0 chr15 10677563 10677593 -75018161 + AT_rich Low_complexity Low_complexity 1 30 0 2143 119 0 3 chr15 10677816 10678111 -75017643 + AluSq SINE Alu 1 294 -19 249 154 91 118 chr15 10679017 10679127 -75016627 + MER5A DNA MER1_type 48 154 -35 2485 77 7 0 chr15 10679621 10679931 -75015823 - AluSx SINE Alu 0 312 1 327 146 66 13 chr15 10679995 10680146 -75015608 + (TA)n Simple_repeat Simple_repeat 2 160 0 248 350 120 26 chr15 10680243 10680552 -75015202 + L2 LINE L2 2316 2653 -661 427 267 87 6 chr15 10680673 10680834 -75014920 - MIR SINE MIR -12 250 77 2301 102 0 0 chr15 10682821 10683115 -75012639 + AluSx SINE Alu 1 294 -18 1077 96 0 0 chr15 10684064 10684200 -75011554 + AluSq/x SINE Alu 1 136 -177 2116 114 0 0 chr15 10684200 10684506 -75011248 + AluSg SINE Alu 1 306 0 347 279 163 54 chr15 10684629 10685109 -75010645 + L1M4 LINE L1 4533 5064 -1082 4512 28 0 4 chr15 10685600 10686099 -75009655 + L1PA3 LINE L1 5659 6155 0 994 284 59 36 chr15 10686099 10686624 -75009130 + L1MEc LINE L1 1543 2079 -4317 1746 178 16 3 chr15 10687612 10687916 -75007838 - AluJo SINE Alu -4 308 1 684 202 0 0 chr15 10687926 10688040 -75007714 - AluJb SINE Alu -14 298 185 1645 164 3 50 chr15 10689114 10689437 -75006317 + AluJo SINE Alu 1 308 -4 339 263 113 38 chr15 10690404 10690537 -75005217 - MIR3 SINE MIR -33 175 33 503 161 0 58 chr15 10690595 10690682 -75005072 - FLAM_A SINE Alu -59 83 2 686 255 83 108 chr15 10692597 10692680 -75003074 - MLT1J LTR MaLR -7 504 420 2452 124 10 41 chr15 10692680 10692840 -75002914 + THE1C LTR MaLR 1 164 -211 1914 97 0 12 chr15 10692840 10693097 -75002657 - AluSc SINE Alu -19 290 37 2452 124 10 41 chr15 10693097 10693323 -75002431 + THE1C LTR MaLR 164 375 0 686 255 83 108 chr15 10693323 10693756 -75001998 - MLT1J LTR MaLR -91 420 1 259 344 129 60 chr15 10694676 10695109 -75000645 - L2 LINE L2 -2 3270 2808 24 0 0 0 chr15 10695201 10695225 -75000529 + AT_rich Low_complexity Low_complexity 1 24 0 1779 93 138 4 chr15 10695299 10695546 -75000208 - AluSc SINE Alu -19 280 1 26 0 0 0 chr15 10695600 10695626 -75000128 + AT_rich Low_complexity Low_complexity 1 26 0 245 300 50 0 chr15 10696834 10696894 -74998860 + L2 LINE L2 3193 3255 -17 1483 193 39 3 chr15 10697360 10697645 -74998109 + AluJb SINE Alu 1 295 -17 11378 52 11 2 chr15 10697766 10699881 -74995873 - L1PA6 LINE L1 -4 6150 4021 575 188 111 0 chr15 10699953 10700070 -74995684 + FRAM SINE Alu 1 126 -50 2187 128 0 0 chr15 10700481 10700779 -74994975 - AluSx SINE Alu -14 298 1 21 0 0 0 chr15 10701043 10701064 -74994690 + AT_rich Low_complexity Low_complexity 1 21 0 1786 128 43 7 chr15 10701068 10701384 -74994370 + AluY SINE Alu 1 326 0 1834 167 7 7 chr15 10701853 10702153 -74993601 - AluJo SINE Alu -12 300 1 180 317 5 156 chr15 10702154 10702353 -74993401 + L2 LINE L2 2588 2756 -558 289 222 69 0 chr15 10702374 10702446 -74993308 + L1MEc LINE L1 27 103 -6293 2019 112 22 25 chr15 10702624 10702938 -74992816 - THE1C LTR MaLR -62 313 1 1570 75 28 0 chr15 10702938 10703151 -74992603 + L1PB1 LINE L1 5562 5780 -371 216 0 0 0 chr15 10703151 10703175 -74992579 + (TG)n Simple_repeat Simple_repeat 2 25 0 365 269 5 10 chr15 10703212 10703426 -74992328 + (CATATA)n Simple_repeat Simple_repeat 1 212 0 2601 82 79 0 chr15 10703426 10703768 -74991986 + L1PB1 LINE L1 5782 6150 -1 440 154 174 34 chr15 10703770 10703919 -74991835 + Charlie5 DNA MER1_type 2391 2560 -52 1916 108 68 20 chr15 10704260 10704555 -74991199 - AluSx SINE Alu -3 309 1 2111 99 0 7 chr15 10704718 10705002 -74990752 - AluSg SINE Alu -9 301 20 304 312 0 13 chr15 10705209 10705286 -74990468 - MER5A DNA MER1_type 0 189 114 * 418 299 26 8 chr15 10705220 10705337 -74990417 + MER5B DNA MER1_type 11 129 -49 1729 124 46 11 chr15 10705979 10706261 -74989493 - L1MB2 LINE L1 -5 6166 5875 266 310 150 9 chr15 10706441 10706554 -74989200 + L2 LINE L2 3134 3262 -10 1790 141 3 33 chr15 10706576 10706875 -74988879 - AluSx SINE Alu -22 290 1 1832 123 24 24 chr15 10708234 10708526 -74987228 - AluJo SINE Alu -11 301 10 1026 241 28 0 chr15 10709270 10709482 -74986272 - MER58A DNA MER1_type -2 222 5 2521 125 24 12 chr15 10709515 10709949 -74985805 + MER1A DNA MER1_type 49 528 -1 1077 86 14 0 chr15 10710044 10710184 -74985570 + AluSg/x SINE Alu 156 297 -15 1126 195 47 9 chr15 10710208 10710423 -74985331 - AluJb SINE Alu -89 223 1 23 78 0 0 chr15 10710673 10710724 -74985030 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr15 10711603 10711626 -74984128 + AT_rich Low_complexity Low_complexity 1 23 0 259 312 168 39 chr15 10712332 10712460 -74983294 + MIR SINE MIR 7 149 -61 802 167 8 15 chr15 10712465 10712597 -74983157 + AluJo SINE Alu 6 136 -176 1964 136 21 0 chr15 10712606 10712886 -74982868 - AluSx SINE Alu -26 286 1 29 28 0 0 chr15 10712888 10712924 -74982830 + AT_rich Low_complexity Low_complexity 1 36 0 2219 64 0 4 chr15 10712924 10713215 -74982539 + AluY SINE Alu 21 310 0 180 300 33 0 chr15 10713224 10713284 -74982470 + MIR SINE MIR 178 239 -23 2161 183 140 78 chr15 10713481 10714082 -74981672 + MER69 DNA AcHobo 3 640 -1886 937 148 74 5 chr15 10714099 10714288 -74981466 + MER69 DNA AcHobo 1867 2068 -458 2521 73 0 0 chr15 10716604 10716905 -74978849 + AluY SINE Alu 1 301 -10 284 106 64 0 chr15 10717333 10717380 -74978374 - MLT1C LTR MaLR -417 50 1 2342 88 10 0 chr15 10718076 10718381 -74977373 - AluY SINE Alu -3 308 1 1948 164 3 0 chr15 10718924 10719222 -74976532 - AluJb SINE Alu -13 299 1 509 93 0 157 chr15 10719543 10719600 -74976154 + LTR62 LTR ERVK 3 37 -682 2348 84 0 3 chr15 10719600 10719899 -74975855 + AluY SINE Alu 1 298 -13 509 93 0 157 chr15 10719899 10719949 -74975805 + LTR62 LTR ERVK 37 93 -626 2538 185 20 31 chr15 10719987 10720724 -74975030 - L1M2 LINE L1 -520 5792 5073 428 190 99 0 chr15 10720723 10720844 -74974910 - L1M2 LINE L1 -1617 4529 4397 * 2402 184 70 13 chr15 10720857 10721454 -74974300 + L1M2 LINE L1 3796 4426 -1720 1078 266 54 61 chr15 10721581 10722140 -74973614 + LTR67 LTR ERVL 3 557 0 239 273 11 11 chr15 10722329 10722386 -74973368 + (TA)n Simple_repeat Simple_repeat 1 60 -28 2050 148 33 0 chr15 10722386 10722723 -74973031 - MER7A DNA MER2_type 0 346 1 239 273 11 11 chr15 10722723 10722753 -74973001 + (TA)n Simple_repeat Simple_repeat 59 88 0 1483 233 0 0 chr15 10722753 10723028 -74972726 + AluSx SINE Alu 1 275 -37 2048 75 0 4 chr15 10723031 10723284 -74972470 - AluSq SINE Alu -17 296 45 210 37 0 0 chr15 10723306 10723333 -74972421 + (TA)n Simple_repeat Simple_repeat 1 27 0 333 292 124 27 chr15 10723822 10724007 -74971747 + L2 LINE L2 2550 2752 -562 2207 100 3 7 chr15 10724088 10724388 -74971366 - AluSc SINE Alu -10 299 1 388 169 12 0 chr15 10724396 10724479 -74971275 - L1MC4 LINE L1 -2 8040 7957 214 156 0 0 chr15 10724523 10724555 -74971199 + MIR SINE MIR 218 249 -13 248 316 43 8 chr15 10724610 10724727 -74971027 + HAL1 LINE L1 3 123 -2384 355 292 211 34 chr15 10724935 10725353 -74970401 - L2 LINE L2 -4 3309 2818 549 224 71 41 chr15 10725379 10725549 -74970205 - MER5B DNA MER1_type 0 178 4 324 284 34 54 chr15 10725556 10725704 -74970050 + HAL1 LINE L1 473 617 -1890 995 153 12 0 chr15 10726012 10726182 -74969572 + MER2 DNA MER2_type 22 193 -152 29 60 0 0 chr15 10726186 10726236 -74969518 + AT_rich Low_complexity Low_complexity 1 50 0 2452 79 0 0 chr15 10726594 10726898 -74968856 - AluSg1 SINE Alu -5 304 1 27 29 0 0 chr15 10726898 10726932 -74968822 + AT_rich Low_complexity Low_complexity 1 34 0 2137 117 3 3 chr15 10727177 10727476 -74968278 - AluSx SINE Alu -13 299 1 2114 89 20 14 chr15 10727531 10727823 -74967931 - AluY SINE Alu -17 294 1 1052 159 45 0 chr15 10727824 10728044 -74967710 + L1MA4 LINE L1 6060 6289 -11 958 184 32 5 chr15 10728049 10728266 -74967488 + L1MB7 LINE L1 5962 6184 0 4337 115 49 7 chr15 10728279 10729009 -74966745 + L1MA9 LINE L1 5552 6312 0 1827 170 6 6 chr15 10729227 10729538 -74966216 + AluJo SINE Alu 1 311 -1 246 183 33 17 chr15 10729538 10729598 -74966156 + GA-rich Low_complexity Low_complexity 1 61 0 1421 55 6 0 chr15 10729897 10730079 -74965675 + L1PA6 LINE L1 5972 6154 0 8360 52 0 14 chr15 10731445 10733310 -74962444 + L1PA6 LINE L1 4291 6144 -10 702 166 72 29 chr15 10734835 10735039 -74960715 - L1MC/D LINE L1 -861 5444 5302 322 319 69 44 chr15 10735117 10735434 -74960320 - L1MC/D LINE L1 -941 5205 4881 2313 183 50 34 chr15 10735909 10736390 -74959364 + L1ME2 LINE L1 5558 6052 -112 723 239 68 0 chr15 10736390 10736566 -74959188 + MER5A DNA MER1_type 1 188 -1 2313 183 50 34 chr15 10736566 10736679 -74959075 + L1ME2 LINE L1 6052 6162 -2 1931 155 0 34 chr15 10736801 10737123 -74958631 + AluSx SINE Alu 2 312 0 316 328 21 47 chr15 10737540 10737732 -74958022 + L2 LINE L2 2897 3083 -189 207 348 72 0 chr15 10738553 10738622 -74957132 + MIR3 SINE MIR 108 181 -27 22 35 0 0 chr15 10738984 10739013 -74956741 + AT_rich Low_complexity Low_complexity 1 29 0 197 303 74 126 chr15 10739167 10739398 -74956356 + L2 LINE L2 3045 3263 -9 1958 154 0 26 chr15 10739499 10739810 -74955944 - AluJo SINE Alu -9 303 1 182 302 31 52 chr15 10739931 10740027 -74955727 + MIR SINE MIR 52 145 -117 2709 42 0 0 chr15 10740035 10740344 -74955410 + AluY SINE Alu 3 311 0 592 308 53 19 chr15 10740829 10741092 -74954662 + L2 LINE L2 2358 2629 -685 1257 102 6 0 chr15 10741272 10741449 -74954305 + AluY SINE Alu 134 311 0 258 233 14 27 chr15 10741597 10741670 -74954084 + MIR3 SINE MIR 135 206 -2 275 120 0 80 chr15 10741687 10741737 -74954017 - L2 LINE L2 -17 3255 3210 2489 86 0 0 chr15 10742014 10742318 -74953436 + AluSx SINE Alu 1 304 -8 636 311 40 4 chr15 10743445 10743670 -74952084 + MIR SINE MIR 28 260 -2 25 0 0 0 chr15 10744321 10744346 -74951408 + AT_rich Low_complexity Low_complexity 1 25 0 2457 91 0 0 chr15 10744368 10744675 -74951079 + AluSx SINE Alu 1 307 -5 669 305 40 14 chr15 10744749 10744972 -74950782 + MIR SINE MIR 25 253 -9 1633 193 23 3 chr15 10745063 10745363 -74950391 + AluJb SINE Alu 1 306 -6 225 228 18 18 chr15 10745818 10745875 -74949879 - MIR3 SINE MIR -32 176 120 1021 160 27 18 chr15 10745880 10746105 -74949649 - L1MB3 LINE L1 -363 5820 5594 1858 142 19 19 chr15 10746107 10746432 -74949322 + L1MB3 LINE L1 5852 6176 -7 245 337 51 10 chr15 10746495 10746593 -74949161 - MIR3 SINE MIR -98 110 9 853 161 37 0 chr15 10747605 10747766 -74947988 - L1MB3 LINE L1 -8 6175 6009 1123 172 103 11 chr15 10748033 10748295 -74947459 - L1MB3 LINE L1 -188 5995 5710 2027 95 26 43 chr15 10749366 10749671 -74946083 + AluSx SINE Alu 1 300 -12 419 291 122 24 chr15 10751573 10751791 -74943963 + MIR SINE MIR 20 256 -6 2430 80 3 0 chr15 10752408 10752708 -74943046 - AluSp SINE Alu -12 301 1 513 241 91 26 chr15 10753392 10753624 -74942130 + L1MEc LINE L1 1745 1991 -4405 336 327 19 0 chr15 10753928 10754087 -74941667 + L1 LINE L1 4891 5052 -1094 1190 266 95 8 chr15 10754130 10754627 -74941127 + L1MC4 LINE L1 6454 6993 -1049 5682 135 77 9 chr15 10754667 10755932 -74939822 + L1PBa LINE L1 1 1500 -5363 2025 83 20 4 chr15 10755928 10756279 -74939475 + L1P5 LINE L1 5210 5565 -586 * 1500 105 43 23 chr15 10756283 10756541 -74939213 - THE1C LTR MaLR -2 373 111 2193 97 7 0 chr15 10757450 10757729 -74938025 + AluSq SINE Alu 1 281 -32 309 51 0 0 chr15 10757732 10757771 -74937983 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 571 241 142 0 chr15 10757771 10757983 -74937771 - MER112 DNA MER1_type -18 242 1 306 0 0 0 chr15 10758397 10758431 -74937323 + (CA)n Simple_repeat Simple_repeat 1 34 0 * 513 0 0 0 chr15 10758430 10758487 -74937267 + (GA)n Simple_repeat Simple_repeat 2 58 0 1972 152 0 0 chr15 10758582 10758865 -74936889 + AluSx SINE Alu 1 283 -29 1594 180 58 4 chr15 10758998 10759276 -74936478 + AluJo SINE Alu 1 293 -19 496 309 100 18 chr15 10759654 10759874 -74935880 + MIR SINE MIR 7 244 -18 232 352 14 0 chr15 10759892 10759963 -74935791 + MIR3 SINE MIR 108 179 -29 408 200 0 0 chr15 10760370 10760460 -74935294 + (TATATG)n Simple_repeat Simple_repeat 1 90 0 22 0 0 0 chr15 10760781 10760803 -74934951 + AT_rich Low_complexity Low_complexity 1 22 0 308 328 115 10 chr15 10760940 10761245 -74934509 + L1M4 LINE L1 3964 4300 -1846 282 246 70 25 chr15 10761306 10761505 -74934249 + L1M4 LINE L1 4398 4605 -1541 235 322 41 0 chr15 10761578 10761724 -74934030 + L1M4 LINE L1 4642 4793 -1353 2540 58 0 0 chr15 10761755 10762064 -74933690 + AluY SINE Alu 1 309 -2 2535 40 3 0 chr15 10762158 10762454 -74933300 + AluY SINE Alu 1 297 -14 1742 179 28 17 chr15 10762459 10762816 -74932938 + MLT1A2 LTR MaLR 3 363 -11 285 98 0 0 chr15 10762838 10762879 -74932875 + (A)n Simple_repeat Simple_repeat 1 41 0 2590 55 0 0 chr15 10763079 10763387 -74932367 + AluY SINE Alu 1 308 -3 249 215 35 62 chr15 10763388 10763532 -74932222 + L1M4 LINE L1 5152 5291 -855 2136 103 7 3 chr15 10763763 10764045 -74931709 - AluSq SINE Alu -30 283 1 377 310 103 13 chr15 10764460 10764615 -74931139 + MIR3 SINE MIR 29 197 -11 1541 224 11 32 chr15 10764621 10764782 -74930972 + MLT1A2 LTR MaLR 1 164 -210 570 118 0 0 chr15 10764782 10764875 -74930879 - L1MB2 LINE L1 -1 6170 6078 1541 224 11 32 chr15 10764875 10765084 -74930670 + MLT1A2 LTR MaLR 164 363 -11 2336 93 0 0 chr15 10765453 10765744 -74930010 - AluSg SINE Alu -19 291 1 344 212 30 20 chr15 10765962 10766061 -74929693 - MER103 DNA DNA -57 109 10 2458 80 0 3 chr15 10767344 10767655 -74928099 - AluY SINE Alu -1 310 1 2080 51 16 0 chr15 10767788 10768042 -74927712 - AluY SINE Alu -53 258 1 777 186 0 0 chr15 10768539 10768668 -74927086 + FLAM_C SINE Alu 1 129 -4 1908 131 50 3 chr15 10768723 10769005 -74926749 - AluSx SINE Alu -4 308 14 3073 153 81 10 chr15 10769009 10769617 -74926137 - L1MB2 LINE L1 -40 6131 5481 195 42 0 0 chr15 10769780 10769804 -74925950 + (A)n Simple_repeat Simple_repeat 1 24 0 338 196 157 39 chr15 10770024 10770126 -74925628 - L2 LINE L2 -2 3311 3198 2447 73 0 0 chr15 10770297 10770598 -74925156 + AluY SINE Alu 1 301 -10 1879 169 3 7 chr15 10771080 10771381 -74924373 - AluJo SINE Alu -12 300 1 189 317 5 156 chr15 10771382 10771581 -74924173 + L2 LINE L2 2588 2756 -558 264 200 77 0 chr15 10771602 10771667 -74924087 + L1MEc LINE L1 27 96 -6300 1445 205 20 11 chr15 10771723 10772079 -74923675 + L1MEc LINE L1 569 927 -5469 390 272 126 58 chr15 10772551 10772812 -74922942 + L3b LINE CR1 1268 1546 -37 23 33 0 0 chr15 10773042 10773072 -74922682 + AT_rich Low_complexity Low_complexity 1 30 0 2362 60 7 0 chr15 10773076 10773360 -74922394 - AluY SINE Alu -25 286 1 2699 239 25 16 chr15 10773689 10774372 -74921382 - L2 LINE L2 -1272 2042 1354 2513 58 0 0 chr15 10774866 10775161 -74920593 - AluY SINE Alu -16 295 1 898 121 0 8 chr15 10775644 10775776 -74919978 + FLAM_C SINE Alu 3 133 0 2212 108 0 14 chr15 10776214 10776510 -74919244 + AluSx SINE Alu 1 292 -20 2003 102 63 3 chr15 10776586 10776870 -74918884 - AluY SINE Alu -10 301 1 1569 162 47 7 chr15 10776882 10777160 -74918594 - AluJo SINE Alu -23 289 1 2526 84 0 0 chr15 10777410 10777719 -74918035 - AluSq SINE Alu -4 309 1 336 102 0 0 chr15 10778245 10778294 -74917460 + (CA)n Simple_repeat Simple_repeat 2 50 0 478 281 34 0 chr15 10778848 10778994 -74916760 + Charlie2 DNA MER1_type 6 156 -2706 2094 241 105 12 chr15 10779073 10779476 -74916278 + Charlie2 DNA MER1_type 1851 2215 -647 2162 114 3 3 chr15 10779476 10779774 -74915980 + AluSx SINE Alu 1 298 -14 2094 241 105 12 chr15 10779774 10780036 -74915718 + Charlie2 DNA MER1_type 2215 2451 -411 2195 116 3 3 chr15 10780036 10780338 -74915416 - AluSc SINE Alu -7 302 1 2094 241 105 12 chr15 10780338 10780414 -74915340 + Charlie2 DNA MER1_type 2451 2519 -343 1759 178 6 19 chr15 10780414 10780729 -74915025 + AluJo SINE Alu 1 311 -1 2094 241 105 12 chr15 10780729 10780900 -74914854 + Charlie2 DNA MER1_type 2519 2850 -12 376 300 18 0 chr15 10781718 10781828 -74913926 + MIR SINE MIR 2 113 -149 1712 154 7 11 chr15 10782050 10782336 -74913418 - AluJo SINE Alu -27 285 1 180 263 172 0 chr15 10782835 10782934 -74912820 - L3 LINE CR1 -10 1567 1452 2240 87 3 20 chr15 10783062 10783360 -74912394 + AluSq SINE Alu 1 293 -20 291 207 66 3 chr15 10783611 10783683 -74912071 + MIR SINE MIR 37 111 -97 253 184 35 23 chr15 10783715 10783808 -74911946 + (TTATA)n Simple_repeat Simple_repeat 1 94 0 344 149 170 53 chr15 10784502 10784596 -74911158 - L2 LINE L2 0 3313 3209 403 278 94 87 chr15 10784677 10785121 -74910633 + L1M2 LINE L1 441 821 -6028 195 114 0 0 chr15 10785121 10785156 -74910598 + (CCG)n Simple_repeat Simple_repeat 2 36 0 403 278 94 87 chr15 10785156 10785376 -74910378 + L1M2 LINE L1 821 1038 -5811 195 42 0 0 chr15 10785423 10785447 -74910307 + (CGGGG)n Simple_repeat Simple_repeat 3 26 0 581 258 60 12 chr15 10785976 10786143 -74909611 - MIR SINE MIR -73 189 15 546 322 16 81 chr15 10786335 10786658 -74909096 - L2 LINE L2 -24 3248 2947 598 262 67 0 chr15 10786702 10786866 -74908888 - MIR SINE MIR -10 252 78 1324 189 102 0 chr15 10786868 10787133 -74908621 + AluJb SINE Alu 1 292 -20 263 182 0 0 chr15 10787135 10787179 -74908575 - MSTC LTR MaLR -384 44 1 1030 191 48 9 chr15 10787293 10787503 -74908251 - MER20 DNA MER1_type 0 219 2 1019 261 42 8 chr15 10787883 10788121 -74907633 - MIR SINE MIR -8 254 9 2535 66 0 7 chr15 10788617 10788922 -74906832 - AluSp SINE Alu -9 304 2 694 155 218 0 chr15 10788968 10789110 -74906644 + MER5A DNA MER1_type 2 174 -15 266 259 206 33 chr15 10789568 10789869 -74905885 + L1MC5 LINE L1 7533 7885 -76 27 29 0 0 chr15 10789910 10789944 -74905810 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr15 10789985 10790011 -74905743 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr15 10790022 10790052 -74905702 + AT_rich Low_complexity Low_complexity 1 30 0 288 0 0 0 chr15 10790411 10790443 -74905311 + (A)n Simple_repeat Simple_repeat 1 32 0 33 66 0 0 chr15 10792939 10793000 -74902754 + AT_rich Low_complexity Low_complexity 1 61 0 404 19 0 19 chr15 10794821 10794875 -74900879 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 24 32 0 0 chr15 10794930 10794961 -74900793 + AT_rich Low_complexity Low_complexity 1 31 0 757 138 0 9 chr15 10795904 10796020 -74899734 + AluJ SINE Alu 22 136 -176 2172 123 3 0 chr15 10797014 10797314 -74898440 + AluSq SINE Alu 1 301 -12 2270 109 7 0 chr15 10797973 10798276 -74897478 + AluSg SINE Alu 1 305 -5 22 0 0 0 chr15 10798992 10799014 -74896740 + AT_rich Low_complexity Low_complexity 1 22 0 875 199 23 0 chr15 10800119 10800290 -74895464 + AluJ SINE Alu 137 311 -1 404 128 13 0 chr15 10800322 10800400 -74895354 + GA-rich Low_complexity Low_complexity 4 82 0 2069 128 3 0 chr15 10800709 10801030 -74894724 + AluSx SINE Alu 1 322 0 1434 169 139 0 chr15 10801568 10801835 -74893919 + AluJb SINE Alu 1 304 -8 357 290 73 8 chr15 10801883 10802007 -74893747 + MIR3 SINE MIR 67 198 -10 355 339 99 12 chr15 10803968 10804139 -74891615 + MIR SINE MIR 25 210 -52 2051 103 0 97 chr15 10804170 10804501 -74891253 - AluSx SINE Alu -12 300 2 426 151 0 0 chr15 10805464 10805537 -74890217 + (TG)n Simple_repeat Simple_repeat 2 74 0 237 211 0 0 chr15 10805537 10805589 -74890165 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 233 200 0 0 chr15 10805901 10805946 -74889808 + L1MD3 LINE L1 7209 7253 -742 376 213 111 0 chr15 10805959 10806067 -74889687 + MLT1F1 LTR MaLR 6 125 -442 2184 183 70 41 chr15 10806067 10806634 -74889120 + L1MD3 LINE L1 7404 7987 -8 2253 105 3 0 chr15 10806743 10807037 -74888717 - AluSp SINE Alu -18 295 1 965 202 58 123 chr15 10807474 10807920 -74887834 - LTR40c LTR ERVL -5 460 44 214 306 65 0 chr15 10807964 10808026 -74887728 + L2 LINE L2 3169 3234 -38 2602 48 0 10 chr15 10808430 10808744 -74887010 - AluY SINE Alu 0 311 1 2381 76 0 10 chr15 10808990 10809292 -74886462 - AluSc SINE Alu -10 299 1 484 330 48 22 chr15 10810623 10810850 -74884904 + MIR SINE MIR 1 233 -29 205 305 263 34 chr15 10811073 10811430 -74884324 - L3b LINE CR1 -9 1574 1136 309 267 67 7 chr15 10812078 10812213 -74883541 + HAL1 LINE L1 2 144 -2363 2086 93 11 4 chr15 10812259 10812568 -74883186 + AluSx SINE Alu 1 311 0 1158 134 0 0 chr15 10812568 10812740 -74883014 + AluSg/x SINE Alu 132 303 -7 851 125 0 0 chr15 10813707 10813835 -74881919 + L1MA2 LINE L1 6172 6299 -5 2259 78 0 13 chr15 10814440 10814746 -74881008 + AluY SINE Alu 1 302 -9 247 198 83 42 chr15 10816180 10816276 -74879478 - L1ME3A LINE L1 -223 5947 5848 284 239 178 68 chr15 10816279 10816394 -74879360 - L1ME3A LINE L1 -393 5769 5668 3656 121 10 2 chr15 10816394 10816915 -74878839 + MER1A DNA MER1_type 3 527 0 284 239 178 68 chr15 10816915 10816991 -74878763 - L1ME3A LINE L1 -494 5668 5564 33 0 0 0 chr15 10817280 10817313 -74878441 + AT_rich Low_complexity Low_complexity 1 33 0 1935 149 0 16 chr15 10817315 10817624 -74878130 + AluJo SINE Alu 1 304 -8 1103 136 37 61 chr15 10817665 10817879 -74877875 - MER2 DNA MER2_type -135 210 2 441 130 0 0 chr15 10817897 10817966 -74877788 + L1P LINE L1 5105 5173 -973 7273 148 16 28 chr15 10818080 10819381 -74876373 + L1P LINE L1 41 1326 -4820 294 218 157 32 chr15 10819417 10819806 -74875948 + L1ME LINE L1 5016 5460 -704 2525 240 115 121 chr15 10819808 10820678 -74875076 + L2 LINE L2 778 1777 -1537 757 177 21 28 chr15 10820678 10820819 -74874935 + FLAM_C SINE Alu 2 141 -2 2525 240 115 121 chr15 10820819 10821359 -74874395 + L2 LINE L2 1777 2319 -995 644 251 153 0 chr15 10821359 10821582 -74874172 + LTR33 LTR ERVL 1 257 -264 347 303 72 7 chr15 10821638 10821790 -74873964 + LTR33 LTR ERVL 355 516 -5 1609 242 110 50 chr15 10821839 10822711 -74873043 + L2 LINE L2 2385 3308 -5 2416 86 0 3 chr15 10823353 10823655 -74872099 - AluSq SINE Alu -12 301 1 1748 188 53 35 chr15 10824324 10824701 -74871053 - L1MD2 LINE L1 -19 6340 5957 1250 202 61 69 chr15 10826639 10827175 -74868579 + L1MC5 LINE L1 6261 6358 -1 335 261 78 20 chr15 10827331 10827484 -74868270 - L1ME4a LINE L1 -14 6107 5946 350 262 158 30 chr15 10827569 10827733 -74868021 - L1MC4 LINE L1 -314 7728 7544 2397 85 0 0 chr15 10828363 10828658 -74867096 + AluY SINE Alu 1 295 -16 1235 154 0 0 chr15 10829742 10830007 -74865747 - MLT1C-int LTR MaLR -1172 199 7 1926 200 90 18 chr15 10830007 10830442 -74865312 - MLT1C LTR MaLR -1 466 1 1813 167 3 7 chr15 10830472 10830771 -74864983 + AluJo SINE Alu 1 298 -14 372 204 70 56 chr15 10830780 10830818 -74864936 + L1M4c LINE L1 1318 1354 -5030 2283 106 3 0 chr15 10830818 10831121 -74864633 - AluY SINE Alu -7 304 1 372 204 70 56 chr15 10831121 10831224 -74864530 + L1M4c LINE L1 1354 1461 -4923 194 174 22 0 chr15 10831263 10831309 -74864445 + (CA)n Simple_repeat Simple_repeat 2 48 0 869 271 42 78 chr15 10831316 10831799 -74863955 + L1M4c LINE L1 1460 2077 -4486 1172 211 38 51 chr15 10831807 10832038 -74863716 + L1M4c LINE L1 2437 2662 -3720 1425 160 116 29 chr15 10832038 10832313 -74863441 + AluJo SINE Alu 1 299 -13 1172 211 38 51 chr15 10832313 10832474 -74863280 + L1M4c LINE L1 2662 2824 -3558 21 0 0 0 chr15 10832654 10832675 -74863079 + AT_rich Low_complexity Low_complexity 1 21 0 981 175 0 0 chr15 10833378 10833532 -74862222 + FRAM SINE Alu 1 154 -22 2363 107 0 0 chr15 10835386 10835694 -74860060 - AluSx SINE Alu -4 308 1 300 299 116 0 chr15 10835862 10836009 -74859745 - L2 LINE L2 -3 3310 3147 2229 115 0 16 chr15 10836413 10836726 -74859028 + AluSq SINE Alu 1 308 -5 2511 62 3 0 chr15 10837531 10837835 -74857919 + AluY SINE Alu 1 305 -6 1492 62 6 0 chr15 10838314 10838490 -74857264 + AluSp SINE Alu 1 177 -136 607 115 0 0 chr15 10838490 10838577 -74857177 + AluSp SINE Alu 220 306 -7 1623 166 17 34 chr15 10839172 10839468 -74856286 + AluJb SINE Alu 7 297 -15 2184 130 10 0 chr15 10839798 10840106 -74855648 - AluSx SINE Alu -1 311 1 6363 121 127 13 chr15 10840156 10840589 -74855165 + Tigger3b DNA MER2_type 2 384 -2644 6098 68 8 115 chr15 10840589 10841514 -74854240 - LTR12 LTR ERV1 0 826 1 6363 121 127 13 chr15 10841514 10841852 -74853902 + Tigger3b DNA MER2_type 384 682 -2346 197 33 33 0 chr15 10841852 10841882 -74853872 + (CTCA)n Simple_repeat Simple_repeat 1 31 0 6363 121 127 13 chr15 10841882 10842212 -74853542 + Tigger3b DNA MER2_type 682 1230 -1 2512 73 0 0 chr15 10842357 10842657 -74853097 + AluY SINE Alu 1 300 -11 229 183 0 8 chr15 10843510 10843600 -74852154 - Alu SINE Alu 0 299 134 512 88 0 15 chr15 10843708 10843804 -74851950 + AluSg/x SINE Alu 214 308 0 2214 81 24 3 chr15 10844825 10845121 -74850633 + AluSg SINE Alu 1 302 -8 498 226 53 111 chr15 10846016 10846259 -74849495 - L2 LINE L2 0 3313 3085 648 139 115 25 chr15 10846287 10846409 -74849345 + FLAM_C SINE Alu 1 133 0 2477 72 0 31 chr15 10846488 10846807 -74848947 + AluSg SINE Alu 1 309 -1 1930 116 47 0 chr15 10846819 10847096 -74848658 + AluSx SINE Alu 1 290 -22 519 233 9 9 chr15 10847173 10847289 -74848465 - LTR67 LTR ERVL -10 547 432 937 142 116 5 chr15 10847447 10847637 -74848117 + L1MC4 LINE L1 7692 7902 -140 216 67 0 0 chr15 10847673 10847703 -74848051 + (TG)n Simple_repeat Simple_repeat 1 30 0 371 179 60 12 chr15 10848149 10848233 -74847521 + L1ME4a LINE L1 5976 6063 -58 314 277 44 66 chr15 10848787 10848924 -74846830 + L3 LINE CR1 1298 1431 -146 2855 222 52 53 chr15 10848946 10849164 -74846590 + L1M4 LINE L1 26 243 -6299 2152 100 0 45 chr15 10849164 10849473 -74846281 + AluSx SINE Alu 14 308 -4 2855 222 52 53 chr15 10849473 10850077 -74845677 + L1M4 LINE L1 243 847 -5695 1630 201 6 10 chr15 10850202 10850515 -74845239 + AluJb SINE Alu 1 312 0 497 279 25 38 chr15 10850589 10850747 -74845007 - MIR SINE MIR -75 187 32 249 305 0 0 chr15 10851938 10851997 -74843757 + MER5A DNA MER1_type 9 67 -122 3238 204 31 51 chr15 10852012 10852431 -74843323 + L1PA11 LINE L1 6 403 -7178 2584 51 0 6 chr15 10852431 10852743 -74843011 - AluY SINE Alu 0 311 2 3238 204 31 51 chr15 10852743 10853106 -74842648 + L1PA11 LINE L1 403 772 -6809 203 0 0 36 chr15 10853106 10853134 -74842620 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 778 157 0 0 chr15 10853136 10853244 -74842510 - AluSg/x SINE Alu -30 282 175 961 158 67 6 chr15 10853351 10853392 -74842362 - AluJb SINE Alu -137 175 138 255 31 0 0 chr15 10853392 10853424 -74842330 + (TG)n Simple_repeat Simple_repeat 2 33 0 961 158 67 6 chr15 10853424 10853547 -74842207 - AluJb SINE Alu -174 138 1 24683 165 16 22 chr15 10853547 10855260 -74840494 + L1PA11 LINE L1 766 2488 -5124 2254 120 0 0 chr15 10855260 10855561 -74840193 - AluSx SINE Alu -11 301 1 24683 165 16 22 chr15 10855561 10858392 -74837362 + L1PA11 LINE L1 2488 5334 -2278 2266 123 0 0 chr15 10858392 10858694 -74837060 + AluSx SINE Alu 1 302 -10 234 0 0 0 chr15 10858694 10858720 -74837034 + (TA)n Simple_repeat Simple_repeat 2 27 0 24683 165 16 22 chr15 10858720 10860237 -74835517 + L1PA11 LINE L1 5332 7609 -3 2409 86 3 0 chr15 10860287 10860590 -74835164 + AluSp SINE Alu 1 304 -9 1936 137 3 23 chr15 10860593 10860892 -74834862 + AluSx SINE Alu 1 293 -19 2315 81 0 3 chr15 10860896 10861222 -74834532 + AluY SINE Alu 1 325 0 207 307 0 40 chr15 10861225 10861300 -74834454 + MER5A DNA MER1_type 111 182 -7 569 156 0 33 chr15 10861304 10861394 -74834360 - AluS SINE Alu -225 88 2 356 325 69 38 chr15 10861581 10861741 -74834013 - MIR3 SINE MIR -23 185 21 401 303 23 0 chr15 10861831 10861963 -74833791 + MER103 DNA DNA 31 165 -1 1247 158 0 87 chr15 10862135 10862388 -74833366 + AluJo SINE Alu 24 254 -58 2121 116 0 41 chr15 10862504 10862823 -74832931 - AluSc SINE Alu -3 306 1 578 259 56 0 chr15 10862866 10863028 -74832726 - MIR SINE MIR -16 246 76 840 189 7 0 chr15 10863031 10863184 -74832570 + FRAM SINE Alu 1 153 -23 1930 159 41 36 chr15 10863332 10863696 -74832058 - MLT2D LTR ERVL -48 366 1 2355 139 118 44 chr15 10863700 10863937 -74831817 + LTR54 LTR ERV1 1 219 -291 405 0 0 0 chr15 10863937 10863982 -74831772 + (CA)n Simple_repeat Simple_repeat 2 46 0 2355 139 118 44 chr15 10863982 10864219 -74831535 + LTR54 LTR ERV1 219 510 0 2299 116 0 10 chr15 10864273 10864584 -74831170 - AluSx SINE Alu -4 308 1 318 309 129 72 chr15 10864940 10865357 -74830397 + L2 LINE L2 2817 3257 -15 181 247 86 65 chr15 10865710 10865803 -74829951 - L2 LINE L2 -908 2406 2312 1933 118 26 4 chr15 10865983 10866255 -74829499 + AluSq SINE Alu 3 280 -33 1403 43 0 0 chr15 10866255 10866418 -74829336 + AluY SINE Alu 134 296 -15 296 247 62 102 chr15 10866708 10867080 -74828674 + HAL1b LINE L1 1195 6121 0 2509 66 0 0 chr15 10867662 10867965 -74827789 + AluY SINE Alu 1 303 -8 1801 152 3 36 chr15 10871914 10872217 -74823537 + AluJo SINE Alu 2 294 -18 1631 185 63 79 chr15 10873395 10873508 -74822246 - L1MC4 LINE L1 -7 8035 7922 195 42 0 0 chr15 10873508 10873532 -74822222 + (TG)n Simple_repeat Simple_repeat 1 24 0 1631 185 63 79 chr15 10873532 10873614 -74822140 - L1MC4 LINE L1 -120 7922 7840 1628 163 92 3 chr15 10873614 10873897 -74821857 - AluJb SINE Alu -4 308 1 1631 185 63 79 chr15 10873897 10874193 -74821561 - L1MC4 LINE L1 -202 7840 7551 2592 40 0 0 chr15 10874204 10874501 -74821253 - AluY SINE Alu -14 297 1 1733 97 0 0 chr15 10874530 10874747 -74821007 + AluSg SINE Alu 1 217 -93 729 159 0 0 chr15 10874747 10874860 -74820894 + AluSc SINE Alu 186 298 -11 641 184 66 33 chr15 10874869 10875021 -74820733 - L1MC4a LINE L1 -364 7444 7288 724 248 78 36 chr15 10875045 10875352 -74820402 - L1MC4a LINE L1 -1429 6379 6060 2060 103 67 36 chr15 10875352 10875711 -74820043 - THE1C LTR MaLR 0 375 6 253 250 125 8 chr15 10875786 10875906 -74819848 - HAL1 LINE L1 -131 2376 2243 1758 154 44 14 chr15 10876674 10876967 -74818787 - AluJb SINE Alu -10 302 1 404 143 63 0 chr15 10877456 10877519 -74818235 + AluSg SINE Alu 227 293 -19 2007 98 11 21 chr15 10877528 10877851 -74817903 - AluY SINE Alu 0 320 1 275 284 0 12 chr15 10877852 10877933 -74817821 - L1ME4a LINE L1 -88 6033 5954 2502 37 0 47 chr15 10877935 10878256 -74817498 - AluY SINE Alu -5 306 1 2483 93 0 0 chr15 10878408 10878719 -74817035 - AluSp SINE Alu -2 311 1 2339 122 0 0 chr15 10878885 10879196 -74816558 - AluSx SINE Alu -1 311 1 2021 195 69 25 chr15 10879264 10879711 -74816043 - MLT1C LTR MaLR 0 467 1 2176 91 0 39 chr15 10879795 10880104 -74815650 + AluSc SINE Alu 1 297 -12 2003 154 12 20 chr15 10880105 10880448 -74815306 - THE1C LTR MaLR -35 340 1 191 272 250 0 chr15 10880511 10880603 -74815151 - L2 LINE L2 0 3313 3199 268 206 192 0 chr15 10883397 10883470 -74812284 + MIR SINE MIR 70 156 -106 845 184 75 9 chr15 10883493 10883751 -74812003 + L1MA9 LINE L1 5908 6280 -32 25 0 0 0 chr15 10883751 10883776 -74811978 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr15 10884533 10884559 -74811195 + AT_rich Low_complexity Low_complexity 1 26 0 2310 100 7 0 chr15 10884617 10884916 -74810838 + AluY SINE Alu 1 301 -10 2105 106 0 3 chr15 10885361 10885644 -74810110 + AluSx SINE Alu 14 295 -17 45 0 0 0 chr15 10885644 10885689 -74810065 + AT_rich Low_complexity Low_complexity 1 45 0 226 246 49 16 chr15 10885889 10885950 -74809804 - MIR3 SINE MIR -31 177 115 262 244 171 12 chr15 10885954 10886036 -74809718 - L2 LINE L2 -2 3270 3176 239 229 0 0 chr15 10886041 10886089 -74809665 - MIR SINE MIR -103 105 58 426 114 43 29 chr15 10886417 10886487 -74809267 - L1PA14 LINE L1 -4 6157 6087 972 210 0 28 chr15 10886607 10886821 -74808933 - AluSc SINE Alu -19 290 83 1742 104 0 0 chr15 10886927 10887149 -74808605 - AluSx SINE Alu -52 260 39 485 33 33 0 chr15 10887149 10887210 -74808544 - MER75B DNA T2_type -130 113 51 1157 120 0 0 chr15 10888349 10888507 -74807247 - AluSg SINE Alu -152 158 1 1629 163 0 51 chr15 10888594 10888888 -74806866 + AluJb SINE Alu 1 279 -33 4625 159 48 14 chr15 10888908 10889831 -74805923 + L1PB4 LINE L1 5159 6129 -27 1007 111 0 20 chr15 10889832 10889985 -74805769 + AluSg/x SINE Alu 155 304 -6 616 113 0 0 chr15 10890404 10890484 -74805270 + AluS SINE Alu 1 80 -233 235 226 0 0 chr15 10892244 10892297 -74803457 - LTR33 LTR ERVL -2 519 467 442 181 52 116 chr15 10892391 10892509 -74803245 - LTR33 LTR ERVL -376 145 38 2244 101 0 14 chr15 10892509 10892806 -74802948 + AluSc SINE Alu 1 293 -16 442 181 52 116 chr15 10892806 10892842 -74802912 - LTR33 LTR ERVL -483 38 1 23 0 0 0 chr15 10892851 10892874 -74802880 + AT_rich Low_complexity Low_complexity 1 23 0 2085 98 3 73 chr15 10893273 10893600 -74802154 + AluSx SINE Alu 1 304 -8 2275 103 0 0 chr15 10894097 10894387 -74801367 + AluSx SINE Alu 1 290 -22 2426 91 0 3 chr15 10894398 10894706 -74801048 + AluSq SINE Alu 1 307 -6 1382 265 75 16 chr15 10894706 10895159 -74800595 + L1MC4a LINE L1 5434 5913 -1895 27 96 0 0 chr15 10895222 10895305 -74800449 + AT_rich Low_complexity Low_complexity 1 83 0 201 74 0 0 chr15 10895335 10895362 -74800392 + (TA)n Simple_repeat Simple_repeat 1 27 0 1087 131 16 60 chr15 10895387 10895570 -74800184 - FAM SINE Alu 0 175 1 675 209 39 63 chr15 10895792 10895913 -74799841 - MER90 LTR ERV1 -13 562 447 2320 91 0 14 chr15 10895913 10896210 -74799544 - AluSg SINE Alu -17 293 1 675 209 39 63 chr15 10896210 10896294 -74799460 - MER90 LTR ERV1 -128 447 362 517 254 41 35 chr15 10896335 10896504 -74799250 - LTR65 LTR ERV1 -499 170 1 198 0 0 0 chr15 10896673 10896695 -74799059 + (TG)n Simple_repeat Simple_repeat 2 23 0 223 250 208 14 chr15 10896997 10897069 -74798685 + MIR3 SINE MIR 88 173 -35 1078 58 0 7 chr15 10897285 10897422 -74798332 - MER75 DNA T2_type 0 504 369 742 137 0 0 chr15 10897423 10897525 -74798229 + AluSp SINE Alu 2 103 -210 262 118 0 0 chr15 10897625 10897659 -74798095 - AluSx SINE Alu -48 253 220 1577 141 4 16 chr15 10897659 10897765 -74797989 - AluSx SINE Alu -73 239 133 2521 34 0 10 chr15 10897765 10898060 -74797694 - AluY SINE Alu -18 293 2 1577 141 4 16 chr15 10898060 10898195 -74797559 - AluSx SINE Alu -179 133 1 214 250 28 42 chr15 10898528 10898623 -74797131 - MIR SINE MIR -87 121 31 1332 215 83 3 chr15 10899137 10899439 -74796315 - L1ME1 LINE L1 -58 6108 5783 797 197 0 0 chr15 10899489 10899621 -74796133 - MER94 DNA DNA -2 132 1 203 303 40 13 chr15 10899782 10899858 -74795896 - MIR SINE MIR -114 148 71 487 320 13 13 chr15 10899918 10900068 -74795686 + MIR SINE MIR 2 151 -111 334 264 0 33 chr15 10900194 10900285 -74795469 + L1MC4 LINE L1 6616 6703 -1339 255 283 22 0 chr15 10900297 10900389 -74795365 - L1MC4 LINE L1 -1335 6707 6614 * 309 239 23 0 chr15 10900313 10900401 -74795353 + L1MC4 LINE L1 6614 6703 -1339 287 228 0 22 chr15 10900407 10900499 -74795255 + L1MC4 LINE L1 6614 6703 -1339 327 150 0 0 chr15 10900503 10900563 -74795191 + (TA)n Simple_repeat Simple_repeat 2 61 0 32 0 0 0 chr15 10900591 10900623 -74795131 + AT_rich Low_complexity Low_complexity 1 32 0 284 161 0 65 chr15 10900638 10900700 -74795054 - U5 snRNA snRNA -58 58 1 974 89 8 0 chr15 10901202 10901326 -74794428 - FLAM_C SINE Alu -8 125 1 327 271 162 19 chr15 10902249 10902459 -74793295 - L1ME4a LINE L1 -2 6119 5880 715 235 8 0 chr15 10902474 10902606 -74793148 + FLAM_A SINE Alu 1 133 0 2305 186 26 0 chr15 10902616 10903002 -74792752 + MSTD LTR MaLR 1 396 0 2513 70 3 0 chr15 10903329 10903631 -74792123 - AluY SINE Alu -8 303 1 1777 152 42 3 chr15 10904462 10904745 -74791009 - AluSq SINE Alu -19 294 1 2403 184 42 60 chr15 10905359 10905718 -74790036 - L1MB7 LINE L1 -13 6171 5826 2218 98 0 10 chr15 10905718 10906015 -74789739 - AluSq SINE Alu -19 294 1 2403 184 42 60 chr15 10906015 10906257 -74789497 - L1MB7 LINE L1 -358 5826 5581 566 87 0 0 chr15 10906262 10906331 -74789423 - AluSg/x SINE Alu -49 263 195 656 185 25 115 chr15 10906345 10906545 -74789209 - L1MB7 LINE L1 -609 5575 5394 1193 156 37 66 chr15 10906683 10906926 -74788828 + MER46A DNA MER2_type 1 236 0 402 21 0 0 chr15 10906947 10906994 -74788760 + (TG)n Simple_repeat Simple_repeat 2 48 0 734 172 8 37 chr15 10907007 10907141 -74788613 - FLAM_C SINE Alu -12 131 2 2154 59 7 11 chr15 10907272 10907545 -74788209 - AluY SINE Alu -39 272 1 1966 135 7 0 chr15 10907659 10907941 -74787813 - AluJb SINE Alu -28 284 1 3556 121 18 2 chr15 10908267 10908756 -74786998 - LOR1a LTR ERV1 0 497 1 655 101 0 0 chr15 10908759 10908848 -74786906 - LOR1a-int LTR ERV1 -2 8118 8030 * 1769 111 0 26 chr15 10908847 10908874 -74786880 - LOR1-int LTR ERV1 -2056 6064 6038 8515 111 25 38 chr15 10908874 10910168 -74785586 + MER52C LTR ERV1 1 1278 0 1769 111 0 26 chr15 10910168 10910411 -74785343 - LOR1-int LTR ERV1 -2082 6038 5801 * 7407 99 55 31 chr15 10910401 10910529 -74785225 - LOR1-int LTR ERV1 -2596 5524 5400 2180 136 0 0 chr15 10910529 10910837 -74784917 + AluSx SINE Alu 1 308 -4 7407 99 55 31 chr15 10910837 10910946 -74784808 - LOR1-int LTR ERV1 -2720 5400 5295 2114 149 0 0 chr15 10910946 10911248 -74784506 + AluSx SINE Alu 1 302 -10 7407 99 55 31 chr15 10911248 10911713 -74784041 - LOR1-int LTR ERV1 -2825 5295 4842 2039 99 28 0 chr15 10911713 10911996 -74783758 - AluSx SINE Alu -21 291 1 7407 99 55 31 chr15 10911996 10912500 -74783254 - LOR1-int LTR ERV1 -3278 4842 4288 2593 50 0 0 chr15 10912617 10912916 -74782838 - AluY SINE Alu -12 299 1 960 223 45 35 chr15 10913312 10913754 -74782000 + L1MC5 LINE L1 7244 7598 -363 1828 168 73 48 chr15 10913760 10913827 -74781927 - L1ME1 LINE L1 -192 5974 5910 306 0 0 0 chr15 10913827 10913861 -74781893 + (TA)n Simple_repeat Simple_repeat 2 35 0 1828 168 73 48 chr15 10913861 10914234 -74781520 - L1ME1 LINE L1 -256 5910 5523 416 194 173 68 chr15 10914250 10914338 -74781416 + L1MC5 LINE L1 7649 7726 -235 2467 68 0 23 chr15 10914338 10914646 -74781108 + AluY SINE Alu 1 301 -10 416 194 173 68 chr15 10914646 10914794 -74780960 + L1MC5 LINE L1 7726 7910 -51 2159 112 0 3 chr15 10914795 10915099 -74780655 + AluY SINE Alu 1 303 -8 2736 32 0 0 chr15 10915610 10915920 -74779834 + AluY SINE Alu 2 311 0 2021 143 0 3 chr15 10915925 10916218 -74779536 + AluSx SINE Alu 1 292 -20 2017 158 0 0 chr15 10916243 10916554 -74779200 + AluJb SINE Alu 1 311 -1 431 164 0 0 chr15 10916606 10916679 -74779075 - Alu SINE Alu -3 307 235 190 300 0 0 chr15 10917138 10917188 -74778566 - L2 LINE L2 -2 3270 3221 228 296 14 120 chr15 10917225 10917367 -74778387 - MER5A DNA MER1_type -28 161 35 761 228 81 129 chr15 10917765 10917945 -74777809 + HAL1 LINE L1 1 159 -2348 2063 102 11 0 chr15 10917945 10918228 -74777526 + AluSx SINE Alu 4 289 -23 761 228 81 129 chr15 10918228 10918381 -74777373 + HAL1 LINE L1 159 318 -2189 32706 87 9 8 chr15 10918392 10924516 -74771238 + L1PA6 LINE L1 11 6151 -3 629 277 204 10 chr15 10924529 10924681 -74771073 + HAL1 LINE L1 307 428 -2079 2247 125 0 0 chr15 10924681 10924984 -74770770 - AluSx SINE Alu -9 303 1 629 277 204 10 chr15 10924984 10925145 -74770609 + HAL1 LINE L1 428 681 -1826 480 81 0 0 chr15 10925150 10925224 -74770530 + (CA)n Simple_repeat Simple_repeat 2 75 0 321 226 108 10 chr15 10925271 10925373 -74770381 + L1ME1 LINE L1 6050 6161 -5 600 233 213 19 chr15 10925395 10925756 -74769998 + HAL1 LINE L1 995 1425 -1082 460 198 144 0 chr15 10925838 10925949 -74769805 + HAL1 LINE L1 1540 1666 -841 439 249 135 17 chr15 10925969 10926206 -74769548 + HAL1 LINE L1 1721 1985 -522 * 2382 142 106 2 chr15 10926203 10926389 -74769365 + L1MDa LINE L1 1822 1987 -4553 206 61 0 30 chr15 10926389 10926422 -74769332 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2382 142 106 2 chr15 10926422 10926755 -74768999 + L1MDa LINE L1 1987 2395 -4145 1913 143 0 17 chr15 10927208 10927508 -74768246 + AluSx SINE Alu 5 299 -13 2127 131 0 0 chr15 10928058 10928356 -74767398 + AluSq SINE Alu 1 298 -15 1795 167 13 26 chr15 10928488 10928799 -74766955 + AluJo SINE Alu 1 307 -5 2126 126 39 39 chr15 10928887 10929251 -74766503 - THE1B LTR MaLR 0 364 1 2196 168 75 23 chr15 10929424 10929942 -74765812 + LTR10A LTR ERV1 1 545 -64 4829 120 21 12 chr15 10929957 10930767 -74764987 + LTR10A-int LTR ERV1 3 819 -5830 * 15685 169 17 26 chr15 10930762 10936170 -74759584 + LTR10A-int LTR ERV1 1396 6646 -3 2086 175 95 12 chr15 10936173 10936676 -74759078 + LTR10A LTR ERV1 1 545 -64 341 281 60 90 chr15 10936848 10937109 -74758645 - MIR SINE MIR 0 262 8 1620 216 62 32 chr15 10937109 10937545 -74758209 + Charlie1b DNA MER1_type 5 459 -2302 2120 117 0 0 chr15 10937545 10937826 -74757928 + AluSc SINE Alu 13 293 -16 1620 216 62 32 chr15 10937826 10937893 -74757861 + Charlie1b DNA MER1_type 459 523 0 21 0 0 0 chr15 10937953 10937974 -74757780 + AT_rich Low_complexity Low_complexity 1 21 0 1994 92 67 11 chr15 10938917 10939200 -74756554 + AluSg SINE Alu 1 299 -11 1755 113 4 8 chr15 10939211 10939459 -74756295 + AluSx SINE Alu 52 298 -14 483 109 0 0 chr15 10939630 10939694 -74756060 + AluSq/x SINE Alu 88 151 -162 1889 124 34 0 chr15 10939695 10939962 -74755792 + AluSg SINE Alu 35 310 0 4731 113 38 30 chr15 10939962 10940785 -74754969 + L1PA15 LINE L1 5319 6147 -18 1821 169 0 16 chr15 10940786 10941093 -74754661 - AluJb SINE Alu -10 302 1 622 206 0 57 chr15 10941860 10942001 -74753753 - FLAM_A SINE Alu 0 133 1 2023 136 3 3 chr15 10942030 10942325 -74753429 + AluSx SINE Alu 1 295 -17 23 0 0 0 chr15 10942755 10942778 -74752976 + AT_rich Low_complexity Low_complexity 1 23 0 1114 218 13 21 chr15 10943157 10943396 -74752358 - AluJo SINE Alu -21 291 55 1385 198 61 27 chr15 10943603 10943896 -74751858 + AluJo SINE Alu 1 303 -9 543 226 139 83 chr15 10943934 10944235 -74751519 + L2 LINE L2 2996 3313 0 2093 110 13 13 chr15 10945506 10945807 -74749947 + AluJb SINE Alu 1 301 -11 35 54 0 0 chr15 10946374 10946430 -74749324 + AT_rich Low_complexity Low_complexity 1 56 0 2295 103 17 3 chr15 10946888 10947189 -74748565 + AluSx SINE Alu 1 305 -7 29 28 0 0 chr15 10947309 10947345 -74748409 + AT_rich Low_complexity Low_complexity 1 36 0 2366 71 3 59 chr15 10947763 10948087 -74747667 - AluY SINE Alu -5 306 1 2264 86 10 10 chr15 10948303 10948604 -74747150 - AluSq SINE Alu -12 301 1 2275 109 0 0 chr15 10948902 10949196 -74746558 + AluSq SINE Alu 1 294 -19 2158 101 7 3 chr15 10949198 10949494 -74746260 + AluSq SINE Alu 1 297 -16 1604 45 5 0 chr15 10950835 10951034 -74744720 - L1PA4 LINE L1 0 6155 5956 180 152 0 0 chr15 10951566 10951599 -74744155 + T-rich Low_complexity Low_complexity 1 33 0 340 243 0 0 chr15 10951609 10951679 -74744075 - FRAM/FAM SINE Alu -97 69 1 180 0 0 0 chr15 10951927 10951947 -74743807 + (T)n Simple_repeat Simple_repeat 1 20 0 2236 99 7 0 chr15 10952524 10952818 -74742936 - AluSq SINE Alu -17 296 1 746 182 52 19 chr15 10953964 10954118 -74741636 + FRAM SINE Alu 1 159 -17 2139 123 0 7 chr15 10954937 10955245 -74740509 - AluSg SINE Alu -4 306 1 965 173 9 28 chr15 10955328 10955542 -74740212 + L1MA3 LINE L1 6096 6305 0 248 115 49 49 chr15 10955696 10955757 -74739997 + L1MC/D LINE L1 5747 5807 -2001 2315 89 3 10 chr15 10955764 10956077 -74739677 + AluSp SINE Alu 1 311 -2 195 278 28 69 chr15 10956756 10956828 -74738926 + MIR SINE MIR 45 113 -95 668 287 139 35 chr15 10957156 10957703 -74738051 - L1MEd LINE L1 -5084 1035 432 293 133 56 100 chr15 10957898 10957988 -74737766 - L1MEd LINE L1 -5967 152 67 2055 129 4 0 chr15 10958073 10958351 -74737403 + AluSx SINE Alu 1 279 -33 288 0 0 0 chr15 10958351 10958383 -74737371 + (CA)n Simple_repeat Simple_repeat 1 32 0 682 153 0 9 chr15 10958670 10958781 -74736973 + AluSc SINE Alu 188 297 -12 340 282 43 43 chr15 10958903 10959020 -74736734 - L2 LINE L2 0 3272 3156 2288 95 3 3 chr15 10962729 10963024 -74732730 + AluSp SINE Alu 1 295 -18 2287 87 7 7 chr15 10963346 10963645 -74732109 + AluSc SINE Alu 1 299 -10 1708 106 109 4 chr15 10964114 10964379 -74731375 + AluSc SINE Alu 2 294 -15 2175 67 10 20 chr15 10964434 10964732 -74731022 - AluY SINE Alu -1 310 16 1338 54 12 12 chr15 10964835 10965002 -74730752 + AluSc SINE Alu 132 298 -11 227 125 0 0 chr15 10965005 10965037 -74730717 - Tigger5 DNA MER2_type -2290 33 2 264 226 0 0 chr15 10965310 10965372 -74730382 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 282 85 0 0 chr15 10965372 10965419 -74730335 - Alu SINE Alu 0 302 256 814 206 19 31 chr15 10965419 10965579 -74730175 + FAM SINE Alu 1 158 -17 2029 136 0 17 chr15 10965671 10965808 -74729946 + AluSx SINE Alu 1 139 -173 2175 102 20 3 chr15 10965808 10966101 -74729653 + AluSg SINE Alu 1 298 -12 2029 136 0 17 chr15 10966101 10966264 -74729490 + AluSx SINE Alu 139 296 -16 242 244 44 0 chr15 10966327 10966417 -74729337 + L1MC/D LINE L1 5744 5837 -1971 2325 83 0 3 chr15 10967717 10968018 -74727736 - AluSg SINE Alu -10 300 1 21 0 0 0 chr15 10968343 10968364 -74727390 + AT_rich Low_complexity Low_complexity 1 21 0 1725 106 0 4 chr15 10968443 10968670 -74727084 + AluSc SINE Alu 70 295 -14 233 185 19 0 chr15 10968744 10968798 -74726956 + LTR33 LTR ERVL 5 59 -462 521 268 56 20 chr15 10968928 10969126 -74726628 + LTR33 LTR ERVL 313 517 -4 2164 112 0 40 chr15 10969131 10969454 -74726300 - AluSx SINE Alu -2 310 1 318 275 64 24 chr15 10969648 10969924 -74725830 + L1MC5 LINE L1 7537 7820 -141 256 143 57 57 chr15 10970018 10970088 -74725666 + L1ME LINE L1 5721 5790 -331 1721 181 14 0 chr15 10970293 10970585 -74725169 - AluJo SINE Alu -14 298 3 1753 184 0 0 chr15 10970749 10971043 -74724711 + AluJo SINE Alu 6 299 -13 1358 109 18 123 chr15 10972973 10973258 -74722496 + MER75 DNA T2_type 5 259 -255 2167 101 0 24 chr15 10973360 10973658 -74722096 - AluSc SINE Alu -18 291 1 3529 124 43 50 chr15 10973658 10973852 -74721902 - L1MB2 LINE L1 -38 6133 5939 2158 122 0 0 chr15 10973852 10974140 -74721614 - AluSg SINE Alu -20 290 3 3529 124 43 50 chr15 10974140 10974588 -74721166 - L1MB2 LINE L1 -232 5939 5495 1573 203 10 13 chr15 10974589 10974899 -74720855 - AluJb SINE Alu -3 309 1 945 219 37 62 chr15 10974900 10975148 -74720606 - L1MB2 LINE L1 -816 5330 5090 2058 132 3 0 chr15 10975148 10975458 -74720296 - AluSx SINE Alu 0 312 2 945 219 37 62 chr15 10975458 10975533 -74720221 - L1MB2 LINE L1 -1056 5090 5015 2506 195 161 133 chr15 10975663 10976654 -74719100 + LTR28 LTR ERV1 1 1019 -1 2159 123 0 10 chr15 10976690 10976998 -74718756 - AluSx SINE Alu -7 305 1 2303 118 0 0 chr15 10977156 10977462 -74718292 - AluSq SINE Alu -7 306 1 1032 193 114 31 chr15 10977780 10978034 -74717720 + ORSL DNA AcHobo 1 275 0 2146 114 3 7 chr15 10978233 10978541 -74717213 - AluSx SINE Alu -5 307 1 1914 118 76 0 chr15 10979546 10979835 -74715919 - AluSx SINE Alu -1 311 1 2106 119 3 0 chr15 10980185 10980478 -74715276 - AluSx SINE Alu -18 294 1 262 319 169 19 chr15 10980667 10980827 -74714927 + L3 LINE CR1 1323 1506 -71 7107 117 23 16 chr15 10981040 10981196 -74714558 - L1MA2 LINE L1 0 6304 6150 2296 80 7 10 chr15 10981196 10981498 -74714256 - AluSx SINE Alu -11 301 1 7107 117 23 16 chr15 10981498 10982580 -74713174 - L1MA2 LINE L1 -154 6150 5076 1991 150 0 6 chr15 10982580 10982893 -74712861 - AluJb SINE Alu -1 311 1 7107 117 23 16 chr15 10982893 10982980 -74712774 - L1MA2 LINE L1 -1228 5076 4991 2470 155 98 26 chr15 10982980 10983437 -74712317 + LTR2B LTR ERV1 1 490 0 7107 117 23 16 chr15 10983437 10983792 -74711962 - L1MA2 LINE L1 -1313 4991 4618 625 270 11 11 chr15 10984023 10984201 -74711553 - MER5B DNA MER1_type 0 178 1 675 287 33 29 chr15 10984380 10984624 -74711130 + MIR SINE MIR 6 250 -12 2261 98 17 0 chr15 10984632 10984928 -74710826 + AluSq SINE Alu 1 301 -12 240 300 154 89 chr15 10986227 10986610 -74709144 - L2 LINE L2 0 3272 2865 1625 120 74 35 chr15 10986722 10987006 -74708748 + AluJo SINE Alu 1 295 -17 1217 160 78 14 chr15 10988285 10988504 -74707250 - AluJo SINE Alu -74 238 6 4544 169 63 29 chr15 10988524 10989568 -74706186 - L1MB8 LINE L1 -1 6177 5064 2137 120 3 3 chr15 10989568 10989868 -74705886 - AluSx SINE Alu -12 300 1 4544 169 63 29 chr15 10989868 10990674 -74705080 - L1MB8 LINE L1 -1114 5064 4286 305 333 28 28 chr15 10990742 10990919 -74704835 + L2 LINE L2 2535 2711 -603 1701 121 114 0 chr15 10992450 10992722 -74703032 + AluSx SINE Alu 1 303 -9 1941 86 127 4 chr15 10992735 10993003 -74702751 + AluSp SINE Alu 1 301 -2 652 282 190 0 chr15 10993056 10993272 -74702482 + MIR SINE MIR 6 262 0 734 215 0 15 chr15 10994592 10994727 -74701027 + FLAM_C SINE Alu 1 133 0 2099 104 7 0 chr15 10996481 10996761 -74698993 + AluSx SINE Alu 1 282 -30 2143 119 3 0 chr15 10997518 10997813 -74697941 - AluSx SINE Alu -16 296 1 503 76 13 0 chr15 11048106 11048185 -74647569 - L1PB2 LINE L1 -7 6144 6065 500 282 63 41 chr15 11048188 11048504 -74647250 + L2 LINE L2 744 1066 -2248 367 313 0 0 chr15 11049452 11049548 -74646206 + MIR SINE MIR 164 259 -3 939 205 111 5 chr15 11049585 11049775 -74645979 - MIR SINE MIR -47 215 6 1926 167 0 0 chr15 11049801 11050089 -74645665 - AluJo SINE Alu -24 288 1 207 69 0 0 chr15 11050113 11050142 -74645612 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2356 98 3 0 chr15 11050791 11051096 -74644658 - AluY SINE Alu -5 306 1 25 0 0 0 chr15 11052070 11052095 -74643659 + AT_rich Low_complexity Low_complexity 1 25 0 245 258 55 55 chr15 11052729 11052857 -74642897 - L1MC5 LINE L1 -83 7878 7751 280 328 102 16 chr15 11053048 11053176 -74642578 + MIR3 SINE MIR 4 142 -66 303 202 60 24 chr15 11053397 11053481 -74642273 + L1PB4 LINE L1 5999 6085 -71 356 105 0 0 chr15 11053484 11053541 -74642213 + Alu SINE Alu 1 57 -244 1621 195 11 0 chr15 11055238 11055525 -74640229 + AluJo SINE Alu 1 290 -22 420 341 147 13 chr15 11056212 11056526 -74639228 - L2 LINE L2 -550 2764 2409 739 296 71 46 chr15 11057933 11058284 -74637470 + L2 LINE L2 2945 3304 -9 2317 87 0 3 chr15 11058611 11058910 -74636844 + AluSx SINE Alu 1 298 -14 1741 164 38 0 chr15 11058921 11059208 -74636546 + AluJo SINE Alu 1 298 -14 2387 124 39 10 chr15 11059366 11059776 -74635978 + L1MA7 LINE L1 5865 6286 -5 2445 49 0 0 chr15 11059824 11060111 -74635643 - AluY SINE Alu -24 287 1 2077 99 10 10 chr15 11060860 11061152 -74634602 - AluSx SINE Alu -20 292 1 248 25 0 50 chr15 11061320 11061360 -74634394 - L1M1 LINE L1 -868 5436 5399 1846 75 24 0 chr15 11061362 11061617 -74634137 + L1P4 LINE L1 5446 5706 -460 1721 196 87 26 chr15 11061623 11062394 -74633360 + LTR28 LTR ERV1 54 941 -79 320 259 37 52 chr15 11062429 11062564 -74633190 + LTR27 LTR ERV1 502 634 -2 779 132 0 0 chr15 11062568 11062689 -74633065 + L1PA16 LINE L1 6042 6162 -4 1558 161 44 11 chr15 11062691 11062964 -74632790 + AluJo SINE Alu 1 282 -30 928 186 74 157 chr15 11063343 11064156 -74631598 + L1MC5 LINE L1 6827 7571 -390 405 224 132 13 chr15 11064233 11064385 -74631369 + L1MC5 LINE L1 7742 7911 -50 2464 55 0 3 chr15 11064468 11064758 -74630996 + AluY SINE Alu 1 289 -22 406 329 109 62 chr15 11064792 11065102 -74630652 - L2 LINE L2 0 3313 2970 746 240 77 5 chr15 11065102 11065298 -74630456 + MER63A DNA MER1_type 1 210 0 406 329 109 62 chr15 11065298 11065473 -74630281 - L2 LINE L2 -343 2970 2805 198 0 0 0 chr15 11065562 11065584 -74630170 + (T)n Simple_repeat Simple_repeat 1 22 0 511 252 133 28 chr15 11065605 11065957 -74629797 + L1MEc LINE L1 2184 2538 -3677 1781 151 36 0 chr15 11066007 11066285 -74629469 - AluJo SINE Alu -24 288 1 352 347 104 19 chr15 11066392 11066767 -74628987 - L1MCa LINE L1 -4063 2544 2138 788 167 80 0 chr15 11066970 11067120 -74628634 - MER20 DNA MER1_type -3 216 55 705 187 0 0 chr15 11067120 11067243 -74628511 + FLAM_C SINE Alu 1 123 -20 312 201 112 7 chr15 11067270 11067432 -74628322 - L1MCa LINE L1 -971 1816 1407 2273 113 0 3 chr15 11068398 11068709 -74627045 - AluSx SINE Alu 0 312 3 1524 199 51 83 chr15 11069178 11069689 -74626065 - L1MC5 LINE L1 -492 7469 6976 1207 149 176 42 chr15 11069689 11069951 -74625803 - AluJo SINE Alu -15 297 1 1524 199 51 83 chr15 11069951 11069991 -74625763 - L1MC5 LINE L1 -985 6976 6936 1554 111 103 109 chr15 11070003 11070074 -74625680 - THE1C LTR MaLR 0 375 305 2121 148 0 0 chr15 11070074 11070384 -74625370 + AluSx SINE Alu 1 310 -2 1554 111 103 109 chr15 11070384 11070689 -74625065 - THE1C LTR MaLR -70 305 1 649 285 37 44 chr15 11070702 11071085 -74624669 - L1M4 LINE L1 -2220 3926 3547 243 0 0 0 chr15 11071156 11071183 -74624571 + (CA)n Simple_repeat Simple_repeat 2 28 0 2131 109 16 10 chr15 11071519 11071823 -74623931 - AluSg SINE Alu -2 308 3 2077 147 0 0 chr15 11072622 11072934 -74622820 + AluSx SINE Alu 1 312 0 250 226 38 0 chr15 11072991 11073044 -74622710 - L2 LINE L2 -3 3310 3256 322 284 68 81 chr15 11073322 11073959 -74621795 + L1ME4a LINE L1 5375 6036 -85 2286 84 7 0 chr15 11074086 11074382 -74621372 + AluY SINE Alu 1 298 -13 3161 178 30 2 chr15 11075121 11075695 -74620059 + L1MB4 LINE L1 5590 6179 -1 746 169 118 6 chr15 11076176 11076354 -74619400 + Charlie4 DNA MER1_type 36 233 -1728 1549 181 14 11 chr15 11076706 11076987 -74618767 + AluJo SINE Alu 1 282 -30 208 238 75 38 chr15 11077165 11077245 -74618509 - MIR3 SINE MIR -7 201 119 2120 106 3 0 chr15 11077698 11078025 -74617729 + AluSx SINE Alu 1 328 0 2024 145 0 3 chr15 11078263 11078574 -74617180 + AluSx SINE Alu 3 312 0 765 169 0 31 chr15 11078809 11078926 -74616828 + AluJo/FLAM SINE Alu 5 119 -183 1976 169 0 0 chr15 11078926 11079228 -74616526 - AluJb SINE Alu -10 302 1 765 169 0 31 chr15 11079228 11079240 -74616514 + AluJo/FLAM SINE Alu 119 130 -172 2357 75 0 0 chr15 11079261 11079553 -74616201 + AluY SINE Alu 20 311 0 201 226 102 95 chr15 11080541 11080678 -74615076 - MIR SINE MIR -62 200 63 683 235 70 0 chr15 11080907 11081094 -74614660 + MIR SINE MIR 63 262 0 220 279 15 15 chr15 11081685 11081753 -74614001 + MER5A DNA MER1_type 117 184 -5 2347 86 0 29 chr15 11082605 11082919 -74612835 + AluSx SINE Alu 5 309 -3 819 185 0 0 chr15 11082933 11083063 -74612691 + FLAM_A SINE Alu 13 142 0 2501 65 7 3 chr15 11083544 11083852 -74611902 + AluSp SINE Alu 1 309 -4 1966 106 3 25 chr15 11084172 11084455 -74611299 + AluY SINE Alu 1 277 -34 2256 115 0 0 chr15 11084567 11084871 -74610883 + AluSx SINE Alu 7 310 -2 2059 137 19 0 chr15 11085245 11085560 -74610194 + L1MA4 LINE L1 5699 6019 -281 23 0 0 0 chr15 11085646 11085669 -74610085 + AT_rich Low_complexity Low_complexity 1 23 0 2057 88 33 4 chr15 11085679 11086004 -74609750 + AluY SINE Alu 1 333 0 185 348 67 0 chr15 11086095 11086184 -74609570 - MIR SINE MIR -118 144 50 2971 205 49 31 chr15 11086473 11087149 -74608605 + L1ME2 LINE L1 5431 6122 -42 2086 109 34 0 chr15 11087149 11087443 -74608311 + AluSp SINE Alu 2 305 -8 2971 205 49 31 chr15 11087443 11087477 -74608277 + L1ME2 LINE L1 6122 6154 -10 2418 99 0 3 chr15 11087740 11088053 -74607701 + AluSx SINE Alu 1 312 0 1531 227 130 19 chr15 11088102 11088360 -74607394 + L1MB7 LINE L1 5174 5402 -782 2326 125 12 18 chr15 11088360 11088695 -74607059 + MER1B DNA MER1_type 5 337 0 1531 227 130 19 chr15 11088695 11088715 -74607039 + L1MB7 LINE L1 5402 5418 -766 1627 171 43 7 chr15 11088715 11088995 -74606759 + AluJb SINE Alu 3 292 -20 1531 227 130 19 chr15 11088995 11089387 -74606367 + L1MB7 LINE L1 5418 5902 -282 22 0 0 0 chr15 11089652 11089674 -74606080 + AT_rich Low_complexity Low_complexity 1 22 0 1116 212 113 3 chr15 11089866 11090158 -74605596 - MER5C DNA MER1_type 0 324 1 26 0 0 0 chr15 11090665 11090691 -74605063 + AT_rich Low_complexity Low_complexity 1 26 0 296 224 224 0 chr15 11090799 11090897 -74604857 - L2 LINE L2 0 3272 3153 1401 143 0 59 chr15 11091728 11091966 -74603788 - AluJb SINE Alu -4 308 85 388 302 24 8 chr15 11092023 11092149 -74603605 + MIR SINE MIR 3 130 -132 2133 108 24 0 chr15 11092429 11092716 -74603038 + AluSg SINE Alu 1 294 -16 263 296 0 0 chr15 11093433 11093504 -74602250 - HsTC2 DNA Tc2 -1827 71 1 1850 133 0 70 chr15 11093641 11093957 -74601797 + AluJo SINE Alu 1 294 -18 386 305 146 26 chr15 11094182 11094333 -74601421 + MER91A DNA MER1_type 1 169 -27 572 165 0 0 chr15 11094779 11094858 -74600896 + AluJ/FLAM SINE Alu 2 80 -232 639 237 118 65 chr15 11094867 11095360 -74600394 - L1MC5 LINE L1 -55 7906 7388 1990 150 20 0 chr15 11095435 11095741 -74600013 + AluJb SINE Alu 1 312 0 1555 104 0 5 chr15 11095888 11096122 -74599632 + AluSc SINE Alu 83 315 0 1704 111 126 4 chr15 11096224 11096485 -74599269 - AluSx SINE Alu -19 293 1 197 211 35 35 chr15 11096489 11096546 -74599208 - MER5B DNA MER1_type -120 58 2 183 254 60 15 chr15 11096698 11096765 -74598989 - L2 LINE L2 -94 3219 3150 258 325 77 34 chr15 11097397 11097514 -74598240 + L2 LINE L2 3141 3262 -10 2122 124 7 0 chr15 11097547 11097854 -74597900 + AluSx SINE Alu 1 309 -3 425 283 133 8 chr15 11097941 11098061 -74597693 + MIR3 SINE MIR 3 137 -71 1355 113 0 10 chr15 11098262 11098456 -74597298 - AluSg/x SINE Alu 0 312 121 2104 148 32 11 chr15 11098582 11098927 -74596827 + L1MB2 LINE L1 5785 6140 -31 2097 135 6 6 chr15 11098927 11099239 -74596515 - AluSx SINE Alu 0 312 1 2104 148 32 11 chr15 11099239 11099272 -74596482 + L1MB2 LINE L1 6140 6171 0 2108 105 28 3 chr15 11099378 11099663 -74596091 + AluSx SINE Alu 3 294 -18 36839 98 14 14 chr15 11099860 11106010 -74589744 - L1PA7 LINE L1 0 6154 11 24 0 0 0 chr15 11106153 11106177 -74589577 + AT_rich Low_complexity Low_complexity 1 24 0 2107 128 3 0 chr15 11106177 11106467 -74589287 - AluSx SINE Alu -21 291 1 1561 192 7 17 chr15 11106474 11106766 -74588988 - AluJb SINE Alu -23 289 1 1925 108 0 78 chr15 11107112 11107418 -74588336 - AluSg SINE Alu -28 282 1 1310 220 45 14 chr15 11107427 11107718 -74588036 - AluJo SINE Alu -12 300 1 1153 264 125 70 chr15 11108140 11109004 -74586750 + L2 LINE L2 2392 3313 0 2307 80 33 3 chr15 11109033 11109332 -74586422 + AluSg SINE Alu 1 308 -2 693 302 150 39 chr15 11109373 11109557 -74586197 + L2 LINE L2 2512 2674 -639 1478 186 34 28 chr15 11109557 11109848 -74585906 + AluJb SINE Alu 1 293 -19 693 302 150 39 chr15 11109848 11110234 -74585520 + L2 LINE L2 2674 3182 -131 2276 116 0 0 chr15 11110234 11110544 -74585210 - AluSq SINE Alu -3 310 1 693 302 150 39 chr15 11110544 11110692 -74585062 + L2 LINE L2 3182 3312 -1 278 289 63 42 chr15 11110705 11110847 -74584907 + MER5A DNA MER1_type 45 189 0 273 57 0 0 chr15 11110865 11110900 -74584854 + (TGAG)n Simple_repeat Simple_repeat 1 35 0 1221 209 8 4 chr15 11110900 11111134 -74584620 - AluJo SINE Alu -77 235 1 286 269 19 19 chr15 11111257 11111361 -74584393 - MER103 DNA DNA -19 147 44 28 61 0 0 chr15 11111629 11111678 -74584076 + AT_rich Low_complexity Low_complexity 1 49 0 2148 96 4 4 chr15 11111788 11112097 -74583657 - AluSc SINE Alu 0 309 1 4319 119 8 37 chr15 11112314 11113035 -74582719 - L1MA5A LINE L1 -56 6241 5542 2130 102 3 0 chr15 11114245 11114572 -74581182 - AluSx SINE Alu 0 328 1 293 222 111 60 chr15 11114937 11115054 -74580700 - MIR SINE MIR -3 259 137 307 247 25 0 chr15 11115054 11115135 -74580619 + HAL1 LINE L1 1777 1859 -648 284 326 27 34 chr15 11115143 11115290 -74580464 + MIR SINE MIR 9 154 -108 2217 118 0 3 chr15 11115603 11115900 -74579854 + AluSp SINE Alu 1 296 -17 195 354 49 12 chr15 11116049 11116131 -74579623 - L2 LINE L2 -49 3223 3139 728 230 168 7 chr15 11117000 11117304 -74578450 - MER113 DNA MER1_type? -163 358 6 289 288 166 14 chr15 11117332 11117471 -74578283 - MIR SINE MIR -83 179 20 295 228 38 51 chr15 11117904 11117983 -74577771 - L2 LINE L2 -4 3309 3232 2116 104 0 0 chr15 11118096 11118401 -74577353 + AluSg SINE Alu 15 310 0 401 289 39 23 chr15 11119255 11119383 -74576371 - L2 LINE L2 -4 3268 3139 248 306 276 17 chr15 11119672 11119904 -74575850 - L2 LINE L2 -497 2817 2526 1403 174 48 37 chr15 11120401 11120695 -74575059 + AluJb SINE Alu 1 297 -15 1899 92 88 4 chr15 11120849 11121122 -74574632 - AluSq SINE Alu -17 296 1 754 66 0 0 chr15 11121585 11121676 -74574078 + AluS SINE Alu 2 92 -220 2041 106 4 0 chr15 11122290 11122554 -74573200 + AluSq SINE Alu 1 265 -48 1760 167 3 27 chr15 11122554 11122854 -74572900 + AluJo SINE Alu 10 302 -10 438 169 49 78 chr15 11123257 11123399 -74572355 - L1MD2 LINE L1 -409 5950 5813 * 3361 178 77 36 chr15 11123393 11123433 -74572321 - L1MB7 LINE L1 0 6184 6147 2037 143 97 30 chr15 11123433 11123804 -74571950 + MSTD LTR MaLR 1 396 0 3361 178 77 36 chr15 11123804 11124544 -74571210 - L1MB7 LINE L1 -37 6147 5372 485 299 143 29 chr15 11124939 11125324 -74570430 - HAL1 LINE L1 -966 1541 1113 495 239 34 86 chr15 11125349 11125558 -74570196 - L2 LINE L2 0 3313 3116 2268 86 3 13 chr15 11125633 11125934 -74569820 - AluY SINE Alu -13 298 1 923 239 50 41 chr15 11126739 11127057 -74568697 + L1ME1 LINE L1 5845 6165 -1 601 189 94 47 chr15 11127356 11127483 -74568271 - FLAM_C SINE Alu 0 133 1 25 31 0 0 chr15 11127956 11127988 -74567766 + AT_rich Low_complexity Low_complexity 1 32 0 2147 130 0 13 chr15 11128215 11128522 -74567232 + AluSx SINE Alu 1 303 -9 419 312 147 6 chr15 11128792 11128949 -74566805 + MIR SINE MIR 14 192 -70 22 94 0 0 chr15 11129158 11129222 -74566532 + AT_rich Low_complexity Low_complexity 1 64 0 1120 133 152 38 chr15 11129876 11130045 -74565709 - AluJb SINE Alu -17 295 96 234 0 0 0 chr15 11130045 11130071 -74565683 + (TG)n Simple_repeat Simple_repeat 2 27 0 1120 133 152 38 chr15 11130071 11130111 -74565643 - AluJb SINE Alu -216 96 62 238 94 0 0 chr15 11130131 11130163 -74565591 - Alu SINE Alu -37 96 65 198 0 0 0 chr15 11130163 11130185 -74565569 + (TG)n Simple_repeat Simple_repeat 2 23 0 260 86 0 0 chr15 11130190 11130225 -74565529 - AluJ/FLAM SINE Alu -206 96 62 238 94 0 0 chr15 11130241 11130273 -74565481 - Alu SINE Alu -206 96 65 216 0 0 0 chr15 11130273 11130297 -74565457 + (TG)n Simple_repeat Simple_repeat 2 25 0 238 94 0 0 chr15 11130302 11130334 -74565420 - Alu SINE Alu -206 96 65 246 62 0 0 chr15 11130334 11130366 -74565388 + (TG)n Simple_repeat Simple_repeat 2 33 0 366 23 0 0 chr15 11130404 11130447 -74565307 + (TG)n Simple_repeat Simple_repeat 2 44 0 238 94 0 0 chr15 11130452 11130484 -74565270 - Alu SINE Alu -206 96 65 216 0 0 0 chr15 11130484 11130508 -74565246 + (TG)n Simple_repeat Simple_repeat 2 25 0 245 91 0 0 chr15 11130513 11130546 -74565208 - Alu SINE Alu -206 96 64 270 0 0 0 chr15 11130547 11130577 -74565177 + (TG)n Simple_repeat Simple_repeat 2 31 0 238 94 0 0 chr15 11130582 11130614 -74565140 - Alu SINE Alu -37 96 65 450 0 0 0 chr15 11130614 11130664 -74565090 + (TG)n Simple_repeat Simple_repeat 2 51 0 630 158 0 0 chr15 11130668 11130763 -74564991 - AluJ/FLAM SINE Alu -216 96 2 31 26 0 0 chr15 11131150 11131188 -74564566 + AT_rich Low_complexity Low_complexity 1 38 0 259 287 189 6 chr15 11131407 11131571 -74564183 + MIR SINE MIR 6 199 -63 465 281 69 26 chr15 11131851 11132101 -74563653 - MIR SINE MIR -13 249 18 278 229 153 70 chr15 11132219 11132376 -74563378 - L2 LINE L2 -18 3295 3126 13882 109 31 96 chr15 11132507 11133671 -74562083 + Tigger1 DNA MER2_type 1 1239 -1179 710 201 15 22 chr15 11133671 11133805 -74561949 + FLAM_A SINE Alu 1 133 0 13882 109 31 96 chr15 11133805 11133895 -74561859 + Tigger1 DNA MER2_type 1239 1333 -1085 2289 97 7 3 chr15 11133895 11134193 -74561561 - AluSx SINE Alu -13 299 1 13882 109 31 96 chr15 11134193 11134574 -74561180 + Tigger1 DNA MER2_type 1333 1737 -681 734 81 20 10 chr15 11134574 11134673 -74561081 + HY3 scRNA scRNA 1 100 -1 13882 109 31 96 chr15 11134673 11135287 -74560467 + Tigger1 DNA MER2_type 1737 2389 -29 828 178 0 37 chr15 11135287 11135422 -74560332 + FLAM_A SINE Alu 1 130 -12 13882 109 31 96 chr15 11135422 11135550 -74560204 + Tigger1 DNA MER2_type 2389 2348 -70 1598 97 198 0 chr15 11135550 11135813 -74559941 + AluY SINE Alu 1 310 0 13882 109 31 96 chr15 11135813 11135881 -74559873 + Tigger1 DNA MER2_type 2347 2418 0 2210 117 3 0 chr15 11137268 11137576 -74558178 + AluSx SINE Alu 1 309 -3 1754 105 0 39 chr15 11138977 11139234 -74556520 - AluSx SINE Alu -10 302 56 2110 134 7 3 chr15 11139377 11139682 -74556072 + AluSq SINE Alu 1 306 -7 21 57 0 0 chr15 11143470 11143505 -74552249 + GC_rich Low_complexity Low_complexity 1 35 0 2151 108 0 19 chr15 11144020 11144335 -74551419 + AluSq SINE Alu 1 309 -4 655 141 8 6 chr15 11145864 11146107 -74549647 + AluJ SINE Alu 1 297 -15 2264 105 0 0 chr15 11146254 11146550 -74549204 + AluSq SINE Alu 1 296 -17 2119 135 0 10 chr15 11146556 11146859 -74548895 + AluSx SINE Alu 1 300 -12 197 281 219 31 chr15 11146903 11146999 -74548755 - MIR SINE MIR -77 131 18 1948 119 46 16 chr15 11147844 11147949 -74547805 + AluJb SINE Alu 1 101 -211 185 56 0 56 chr15 11147949 11147985 -74547769 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1948 119 46 16 chr15 11147985 11148182 -74547572 + AluJb SINE Alu 101 312 0 1150 122 6 11 chr15 11148312 11148493 -74547261 - AluSx SINE Alu -132 180 1 225 315 37 9 chr15 11149416 11149524 -74546230 + L1ME LINE L1 5625 5735 -386 1909 93 72 7 chr15 11149589 11149867 -74545887 + AluSq SINE Alu 1 296 -17 2411 64 27 0 chr15 11149877 11150174 -74545580 + AluSg SINE Alu 1 305 -5 2408 65 0 3 chr15 11150382 11150674 -74545080 + AluY SINE Alu 1 291 -20 428 89 0 0 chr15 11152247 11152303 -74543451 + Alu SINE Alu 2 57 -261 187 316 0 0 chr15 11152476 11152533 -74543221 + L2 LINE L2 3234 3290 -23 2199 123 0 3 chr15 11153224 11153532 -74542222 + AluSx SINE Alu 1 307 -5 777 171 0 0 chr15 11153764 11153881 -74541873 + AluJo/FLAM SINE Alu 5 121 -191 1518 172 0 0 chr15 11153881 11154119 -74541635 - AluJb SINE Alu -11 301 64 369 0 0 0 chr15 11154271 11154312 -74541442 + (CA)n Simple_repeat Simple_repeat 2 42 0 288 0 0 0 chr15 11154311 11154343 -74541411 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 358 225 73 169 chr15 11154414 11154810 -74540944 - L1M2 LINE L1 -5914 935 578 1895 111 28 3 chr15 11155370 11155659 -74540095 + AluSq SINE Alu 1 296 -17 1951 95 27 34 chr15 11155659 11155955 -74539799 - AluSx SINE Alu -16 296 3 5581 162 20 47 chr15 11156610 11157585 -74538169 - L1MA9 LINE L1 0 6312 5365 316 111 0 0 chr15 11157585 11157630 -74538124 + L1PA3 LINE L1 6109 6153 -2 5581 162 20 47 chr15 11157630 11157816 -74537938 - L1MA9 LINE L1 -947 5365 5175 350 297 87 19 chr15 11158673 11158939 -74536815 - L1ME3A LINE L1 -234 5936 5653 186 103 0 0 chr15 11158952 11158981 -74536773 + (TATATG)n Simple_repeat Simple_repeat 1 29 0 301 246 117 84 chr15 11159035 11159214 -74536540 - L1ME LINE L1 -5045 1025 841 438 250 139 5 chr15 11159252 11159408 -74536346 + MER3 DNA MER1_type 9 131 -78 1563 189 7 13 chr15 11159500 11159802 -74535952 + AluJb SINE Alu 6 305 -7 378 275 201 31 chr15 11159980 11160304 -74535450 - L1ME4a LINE L1 -224 5897 5519 2145 30 4 52 chr15 11160466 11160737 -74535017 - AluY SINE Alu -14 297 40 354 275 138 9 chr15 11161158 11161267 -74534487 + MIR SINE MIR 14 136 -126 211 354 80 0 chr15 11162545 11162660 -74533094 + MIR SINE MIR 24 152 -56 1145 173 12 71 chr15 11162735 11163032 -74532722 + AluJo SINE Alu 44 325 0 184 234 16 62 chr15 11163033 11163097 -74532657 + MIR SINE MIR 194 254 -8 564 232 150 36 chr15 11163409 11163629 -74532125 - L1ME LINE L1 -382 5780 5536 1228 116 48 16 chr15 11163637 11163826 -74531928 - AluY SINE Alu -11 300 106 24 91 0 0 chr15 11165302 11165368 -74530386 + AT_rich Low_complexity Low_complexity 1 66 0 234 0 0 0 chr15 11165909 11165935 -74529819 + (CA)n Simple_repeat Simple_repeat 2 27 0 190 329 47 12 chr15 11166237 11166322 -74529432 + L2 LINE L2 2855 2942 -330 29 47 0 0 chr15 11166489 11166532 -74529222 + AT_rich Low_complexity Low_complexity 1 43 0 285 284 15 0 chr15 11166568 11166635 -74529119 + L2 LINE L2 3186 3253 -19 15028 48 0 0 chr15 11167860 11169692 -74526062 + L1P LINE L1 3246 5077 -1069 549 320 40 33 chr15 11170312 11170612 -74525142 + LTR16A1 LTR ERVL 147 448 -9 501 328 122 3 chr15 11171657 11171986 -74523768 + L1MC/D LINE L1 5454 5821 -1987 1947 115 7 18 chr15 11173108 11173386 -74522368 + AluSc SINE Alu 35 309 0 1417 61 0 20 chr15 11173970 11174168 -74521586 - L1PA5 LINE L1 -1 6153 5960 234 91 0 0 chr15 11174715 11174748 -74521006 + (TG)n Simple_repeat Simple_repeat 1 33 0 276 30 0 0 chr15 11176832 11176865 -74518889 + (CA)n Simple_repeat Simple_repeat 1 33 0 27 0 0 0 chr15 11178995 11179022 -74516732 + AT_rich Low_complexity Low_complexity 1 27 0 2423 85 0 7 chr15 11180958 11181263 -74514491 - AluSg SINE Alu -7 303 1 1772 166 10 26 chr15 11181266 11181573 -74514181 - AluJb SINE Alu -10 302 1 1747 189 0 38 chr15 11186161 11186474 -74509280 - AluJb SINE Alu -11 301 1 339 256 0 11 chr15 11186669 11186759 -74508995 + L3b LINE CR1 1252 1340 -243 30 77 0 0 chr15 11186995 11187060 -74508694 + AT_rich Low_complexity Low_complexity 1 65 0 195 42 0 0 chr15 11189772 11189796 -74505958 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2278 90 4 0 chr15 11189798 11190077 -74505677 - AluSx SINE Alu -32 280 1 226 254 8 68 chr15 11190118 11190236 -74505518 + CT-rich Low_complexity Low_complexity 2 112 0 2363 70 0 88 chr15 11192490 11192832 -74502922 - AluSp SINE Alu -1 312 1 213 39 0 0 chr15 11194689 11194715 -74501039 + (CCCCCG)n Simple_repeat Simple_repeat 1 26 0 25 102 0 0 chr15 11195256 11195344 -74500410 + GC_rich Low_complexity Low_complexity 1 88 0 22 0 0 0 chr15 11195400 11195422 -74500332 + GC_rich Low_complexity Low_complexity 1 22 0 737 144 0 8 chr15 11196464 11196582 -74499172 - FLAM_C SINE Alu -19 124 8 426 20 0 0 chr15 11196692 11196743 -74499011 + (TG)n Simple_repeat Simple_repeat 2 52 0 2258 106 0 20 chr15 11196744 11197047 -74498707 - AluSg SINE Alu -12 298 2 2230 87 16 42 chr15 11197049 11197359 -74498395 - AluSq SINE Alu -11 302 1 2008 200 105 40 chr15 11197433 11197515 -74498239 - LTR49 LTR ERV1 -15 580 505 2319 84 3 50 chr15 11197515 11197835 -74497919 - AluSx SINE Alu -7 305 1 2008 200 105 40 chr15 11197835 11198297 -74497457 - LTR49 LTR ERV1 -90 505 1 665 199 15 11 chr15 11198817 11199088 -74496666 + CT-rich Low_complexity Low_complexity 1 272 0 739 151 20 12 chr15 11199109 11199363 -74496391 + CT-rich Low_complexity Low_complexity 1 256 0 603 149 79 26 chr15 11199363 11199477 -74496277 - FLAM_C SINE Alu -15 128 9 25 0 0 0 chr15 11199490 11199515 -74496239 + AT_rich Low_complexity Low_complexity 1 25 0 856 167 0 0 chr15 11199516 11199648 -74496106 - FLAM_C SINE Alu -5 138 7 1100 201 33 43 chr15 11199666 11200133 -74495621 + MLT1A2 LTR MaLR 1 374 0 2012 166 0 3 chr15 11200492 11200805 -74494949 + AluJb SINE Alu 1 312 0 1802 169 3 43 chr15 11201011 11201336 -74494418 + AluJb SINE Alu 1 312 0 22 35 0 0 chr15 11202855 11202884 -74492870 + AT_rich Low_complexity Low_complexity 1 29 0 1787 203 34 43 chr15 11203004 11203267 -74492487 + MER4D LTR ERV1 1 265 -638 183 80 0 0 chr15 11203267 11203292 -74492462 + (TA)n Simple_repeat Simple_repeat 1 25 0 1787 203 34 43 chr15 11203292 11203333 -74492421 + MER4D LTR ERV1 265 305 -598 2160 136 0 0 chr15 11203333 11203627 -74492127 - AluSc SINE Alu -15 294 1 1787 203 34 43 chr15 11203627 11203649 -74492105 + MER4D LTR ERV1 305 326 -577 464 0 18 0 chr15 11203649 11203705 -74492049 + (TA)n Simple_repeat Simple_repeat 2 58 0 279 0 0 0 chr15 11203706 11203737 -74492017 + (TG)n Simple_repeat Simple_repeat 2 32 0 1840 177 21 0 chr15 11203740 11204022 -74491732 - AluSx SINE Alu -24 288 1 1787 203 34 43 chr15 11204022 11204156 -74491598 + MER4D LTR ERV1 328 465 -438 1263 176 114 70 chr15 11204157 11204588 -74491166 + LTR7 LTR ERV1 1 450 0 2643 142 9 24 chr15 11204588 11205054 -74490700 + HERVH LTR ERV1 1 459 -7254 13282 136 6 22 chr15 11205108 11207348 -74488406 + HERVH LTR ERV1 793 2995 -4718 5595 111 8 2 chr15 11207327 11208182 -74487572 + HERVH LTR ERV1 3140 3999 -3714 * 5005 114 25 1 chr15 11208243 11208999 -74486755 + HERVH LTR ERV1 3995 4768 -2945 2641 103 7 12 chr15 11208997 11209413 -74486341 + HERVH LTR ERV1 7300 7713 0 * 1290 184 101 57 chr15 11209413 11209837 -74485917 + LTR7 LTR ERV1 1 443 -7 1908 130 35 130 chr15 11209851 11210312 -74485442 + MER4D LTR ERV1 487 903 0 3896 134 14 2 chr15 11210409 11211034 -74484720 + MER41B LTR ERV1 1 633 -2 4368 108 32 34 chr15 11211038 11211750 -74484004 + MER41B-int LTR ERV1 4 714 -5232 323 216 30 52 chr15 11211750 11211849 -74483905 + MER41B LTR ERV1 418 515 -120 2347 97 7 3 chr15 11211849 11212149 -74483605 - AluSq SINE Alu -8 305 5 323 216 30 52 chr15 11212149 11212183 -74483571 + MER41B LTR ERV1 515 548 -87 29 0 0 0 chr15 11212696 11212725 -74483029 + AT_rich Low_complexity Low_complexity 1 29 0 271 78 39 0 chr15 11215249 11215300 -74480454 + C-rich Low_complexity Low_complexity 90 142 0 191 214 24 0 chr15 11216073 11216115 -74479639 - MIR SINE MIR -62 146 103 208 235 39 0 chr15 11216613 11216664 -74479090 - MIR SINE MIR -61 147 95 399 238 118 41 chr15 11217659 11217828 -74477926 - MIR SINE MIR -59 149 16 216 0 0 0 chr15 11218014 11218038 -74477716 + (CA)n Simple_repeat Simple_repeat 2 25 0 329 226 78 26 chr15 11219432 11219547 -74476207 - L2 LINE L2 -5 3308 3188 301 331 119 0 chr15 11219554 11219705 -74476049 - MIR3 SINE MIR -9 199 31 360 318 62 6 chr15 11220608 11220784 -74474970 - MIR SINE MIR -29 233 48 1991 101 31 7 chr15 11220786 11221074 -74474680 - AluY SINE Alu -16 295 1 510 93 0 13 chr15 11223776 11223851 -74471903 + AluS SINE Alu 2 75 -238 2037 128 0 6 chr15 11224497 11224809 -74470945 + AluSx SINE Alu 1 310 -2 381 295 93 39 chr15 11224887 11225016 -74470738 - L2 LINE L2 -15 3257 3122 325 224 47 0 chr15 11225213 11225298 -74470456 - MIR SINE MIR -114 148 60 290 283 133 17 chr15 11225567 11225687 -74470067 + L2 LINE L2 3180 3313 0 646 269 65 20 chr15 11225773 11225974 -74469780 - MER82 DNA MER2_type 0 653 444 327 311 52 27 chr15 11226010 11226202 -74469552 + MIR SINE MIR 4 202 -57 318 316 0 11 chr15 11226221 11226316 -74469438 - MER82 DNA MER2_type -559 94 1 200 292 15 0 chr15 11226594 11226659 -74469095 + L2 LINE L2 3158 3223 -90 721 183 0 0 chr15 11226957 11227072 -74468682 - FLAM_A SINE Alu -18 115 1 325 91 0 0 chr15 11228855 11228899 -74466855 + Alu SINE Alu 1 44 -258 203 171 0 0 chr15 11228982 11229023 -74466731 + T-rich Low_complexity Low_complexity 5 45 0 435 297 115 50 chr15 11229255 11230030 -74465724 - L1MEd LINE L1 -3193 2936 2112 240 282 73 86 chr15 11230089 11230304 -74465450 - L1MEd LINE L1 -4974 1145 932 1310 148 33 121 chr15 11230304 11230634 -74465120 - AluJb SINE Alu 0 302 2 240 282 73 86 chr15 11230634 11230663 -74465091 - L1MEd LINE L1 -5187 932 904 413 320 85 29 chr15 11230739 11231045 -74464709 - L1MEd LINE L1 -5236 883 561 573 224 135 13 chr15 11231599 11231755 -74463999 + MIR SINE MIR 24 198 -64 1841 119 7 24 chr15 11233583 11233877 -74461877 - AluSq SINE Alu -24 289 1 238 285 45 73 chr15 11234430 11234609 -74461145 - L1ME3A LINE L1 -10 6160 5987 1221 202 0 13 chr15 11234694 11234932 -74460822 - MER106A DNA MER1_type -1 235 1 698 243 108 21 chr15 11234943 11235301 -74460453 - L1ME3A LINE L1 -218 5952 5535 222 37 0 0 chr15 11235884 11235911 -74459843 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 607 195 0 81 chr15 11235914 11236063 -74459691 - AluJb SINE Alu -30 282 146 294 299 68 68 chr15 11236834 11237011 -74458743 + MIR SINE MIR 71 247 -15 21 36 0 0 chr15 11237147 11237175 -74458579 + AT_rich Low_complexity Low_complexity 1 28 0 256 291 23 23 chr15 11237407 11237493 -74458261 - MIR SINE MIR -70 192 107 1612 174 0 7 chr15 11237839 11238127 -74457627 + AluJo SINE Alu 1 286 -26 1138 178 0 10 chr15 11238685 11238893 -74456861 - AluSg/x SINE Alu -13 297 92 303 311 104 42 chr15 11239135 11239328 -74456426 + HAL1 LINE L1 2255 2459 -48 2130 115 0 7 chr15 11239583 11239887 -74455867 + AluSx SINE Alu 1 302 -10 337 163 62 31 chr15 11241483 11241612 -74454142 + (CA)n Simple_repeat Simple_repeat 1 133 0 235 150 24 63 chr15 11241726 11241853 -74453901 + (CACAC)n Simple_repeat Simple_repeat 5 126 0 249 215 47 19 chr15 11241872 11241979 -74453775 + (CA)n Simple_repeat Simple_repeat 1 110 0 181 230 27 0 chr15 11242461 11242535 -74453219 + C-rich Low_complexity Low_complexity 3 78 0 283 254 92 2 chr15 11242765 11242885 -74452869 - L1ME LINE L1 -363 5799 5668 336 24 0 0 chr15 11244854 11244895 -74450859 + (TG)n Simple_repeat Simple_repeat 2 42 0 2113 120 3 0 chr15 11245456 11245756 -74449998 - AluSx SINE Alu -11 301 1 2308 138 37 0 chr15 11246267 11246650 -74449104 + L1MB3 LINE L1 5787 6183 0 1236 139 15 105 chr15 11246767 11247034 -74448720 - MSTB LTR MaLR -183 243 1 2029 164 31 10 chr15 11248497 11248880 -74446874 - L1MB5 LINE L1 -1 6173 5783 548 126 11 0 chr15 11248881 11248968 -74446786 - AluSg/x SINE Alu -6 304 217 546 213 0 0 chr15 11248976 11249084 -74446670 - L1MB5 LINE L1 -389 5785 5678 620 227 142 98 chr15 11249119 11249639 -74446115 - MLT1H1 LTR MaLR 0 555 19 232 220 131 42 chr15 11249666 11249880 -74445874 - HAL1 LINE L1 -1449 1058 826 1876 141 7 3 chr15 11249949 11250266 -74445488 + AluJo SINE Alu 1 312 0 242 296 66 84 chr15 11250553 11250887 -74444867 - HAL1 LINE L1 -2170 337 10 1006 196 47 23 chr15 11251232 11251446 -74444308 + MER20 DNA MER1_type 1 219 0 2319 75 3 0 chr15 11252330 11252635 -74443119 - AluSq SINE Alu -7 306 1 341 64 0 6 chr15 11252856 11252942 -74442812 - AluSp/q SINE Alu 0 317 245 2102 167 33 14 chr15 11253149 11253569 -74442185 + L1MB3 LINE L1 5754 6181 -2 1270 186 0 0 chr15 11255676 11255896 -74439858 + AluJb SINE Alu 73 292 -20 210 308 64 0 chr15 11256047 11256125 -74439629 + MIR SINE MIR 15 97 -165 195 69 0 0 chr15 11256149 11256178 -74439576 + (TC)n Simple_repeat Simple_repeat 1 29 0 1648 151 52 0 chr15 11258249 11258540 -74437214 + AluJb SINE Alu 1 306 -6 790 320 86 42 chr15 11258637 11259411 -74436343 + L1ME LINE L1 4739 5544 -622 447 277 44 29 chr15 11259439 11259645 -74436109 + L1ME LINE L1 5547 5755 -366 690 193 0 22 chr15 11260194 11260329 -74435425 + FLAM_A SINE Alu 1 132 -1 2286 83 3 0 chr15 11260482 11260784 -74434970 + AluY SINE Alu 1 303 -8 1732 143 10 17 chr15 11261525 11261825 -74433929 - AluJo SINE Alu -14 298 1 195 42 0 0 chr15 11262329 11262353 -74433401 + (A)n Simple_repeat Simple_repeat 1 24 0 474 18 0 0 chr15 11264723 11264778 -74430976 + (TA)n Simple_repeat Simple_repeat 1 55 0 2077 146 193 71 chr15 11264842 11265377 -74430377 - MER7C DNA MER2_type 0 602 3 223 322 110 44 chr15 11265815 11266042 -74429712 + MIR SINE MIR 21 262 0 735 254 225 17 chr15 11267121 11267467 -74428287 - L2 LINE L2 0 3313 2896 27 62 0 0 chr15 11270733 11270781 -74424973 + GC_rich Low_complexity Low_complexity 1 48 0 429 173 53 0 chr15 11270856 11271157 -74424597 + (CCG)n Simple_repeat Simple_repeat 1 316 0 419 143 0 0 chr15 11271311 11271374 -74424380 + L1PA7 LINE L1 6081 6143 -11 30 0 0 0 chr15 11271878 11271908 -74423846 + AT_rich Low_complexity Low_complexity 1 30 0 338 182 136 0 chr15 11272272 11272338 -74423416 + MADE1 DNA Mariner 1 75 -5 1280 188 121 30 chr15 11272382 11272712 -74423042 + MER46B DNA MER2_type 2 236 0 301 240 31 62 chr15 11273147 11273243 -74422511 - L1MC4 LINE L1 -1334 6708 6616 1257 138 14 24 chr15 11273341 11273638 -74422116 - THE1B LTR MaLR 0 364 1 393 308 88 85 chr15 11273913 11274446 -74421308 - L1 LINE L1 -1826 4320 3748 2529 48 3 0 chr15 11274446 11274737 -74421017 - AluY SINE Alu -19 292 1 393 308 88 85 chr15 11274737 11274939 -74420815 - L1 LINE L1 -2398 3748 3548 588 122 11 3 chr15 11275157 11275264 -74420490 - L1MA9 LINE L1 -199 6092 5987 23 108 0 0 chr15 11275563 11275656 -74420098 + AT_rich Low_complexity Low_complexity 1 93 0 354 45 0 0 chr15 11275780 11275824 -74419930 + (TA)n Simple_repeat Simple_repeat 1 44 0 736 224 6 19 chr15 11275914 11276070 -74419684 - MSTD LTR MaLR 0 396 243 520 119 0 48 chr15 11276153 11276237 -74419517 - MSTD LTR MaLR -315 81 2 220 312 65 13 chr15 11277320 11277397 -74418357 + L2 LINE L2 3187 3267 -5 668 280 89 57 chr15 11277418 11277821 -74417933 + L2 LINE L2 2305 2720 -594 2245 254 93 33 chr15 11277863 11278825 -74416929 + L1MEc LINE L1 304 1183 -5034 2416 47 3 3 chr15 11279313 11279609 -74416145 - AluY SINE Alu -15 296 1 209 89 36 36 chr15 11280880 11280936 -74414818 + CT-rich Low_complexity Low_complexity 1 56 0 2746 249 30 82 chr15 11280998 11281505 -74414249 + L1MC4 LINE L1 6635 7056 -986 2425 43 10 7 chr15 11281505 11281810 -74413944 - AluY SINE Alu -5 306 1 2746 249 30 82 chr15 11281810 11282398 -74413356 + L1MC4 LINE L1 7056 7673 -369 2363 26 0 7 chr15 11282985 11283255 -74412499 + AluY SINE Alu 41 308 -3 297 227 39 0 chr15 11284966 11285119 -74410635 + (TTA)n Simple_repeat Simple_repeat 1 158 0 241 300 64 21 chr15 11285435 11285575 -74410179 - L1ME2 LINE L1 -15 6149 6004 315 149 0 0 chr15 11285575 11285649 -74410105 + (TA)n Simple_repeat Simple_repeat 1 74 0 321 311 0 0 chr15 11285649 11285739 -74410015 + L1MC4 LINE L1 6613 6702 -1340 4240 226 52 57 chr15 11285761 11285777 -74409977 - L1ME2 LINE L1 -175 5991 5976 1610 72 0 0 chr15 11285777 11285970 -74409784 - AluSq SINE Alu -51 262 70 4240 226 52 57 chr15 11285970 11288067 -74407687 - L1ME2 LINE L1 -190 5976 3898 2857 25 0 0 chr15 11288219 11288537 -74407217 + AluYb8 SINE Alu 1 318 0 291 154 15 46 chr15 11288857 11288922 -74406832 - L2 LINE L2 -1 3312 3250 21 36 0 0 chr15 11289431 11289459 -74406295 + AT_rich Low_complexity Low_complexity 1 28 0 2297 53 3 3 chr15 11289829 11290137 -74405617 - AluSp SINE Alu 0 308 1 23 0 0 0 chr15 11290986 11291009 -74404745 + AT_rich Low_complexity Low_complexity 1 23 0 1363 39 0 0 chr15 11291009 11291164 -74404590 - L1PA4 LINE L1 -3 6152 5998 5797 77 25 9 chr15 11292341 11293116 -74402638 - L1PA8A LINE L1 -4 6127 5341 3389 252 43 32 chr15 11293674 11294943 -74400811 + L1MC3 LINE L1 3974 5255 -891 1281 114 0 0 chr15 11295047 11295252 -74400502 + AluSg/x SINE Alu 113 317 0 2227 190 15 12 chr15 11295299 11295335 -74400419 + L1 LINE L1 3297 3331 -2815 2288 104 0 0 chr15 11295335 11295643 -74400111 + AluY SINE Alu 1 308 -3 2227 190 15 12 chr15 11295643 11296086 -74399668 + L1 LINE L1 3331 3777 -2369 1548 166 3 21 chr15 11296929 11297213 -74398541 + AluJo SINE Alu 10 288 -24 263 269 24 19 chr15 11297263 11297368 -74398386 + MIR3 SINE MIR 65 170 -38 3680 182 35 89 chr15 11297579 11298171 -74397583 + L1MC3 LINE L1 5281 5903 -1882 2212 103 3 3 chr15 11298171 11298462 -74397292 + AluSg SINE Alu 1 291 -19 3680 182 35 89 chr15 11298462 11298765 -74396989 + L1MC3 LINE L1 5903 6119 -1666 2074 90 11 4 chr15 11298765 11299044 -74396710 + AluSq SINE Alu 1 281 -32 3680 182 35 89 chr15 11299044 11299146 -74396608 + L1MC3 LINE L1 6119 6225 -1560 198 71 0 0 chr15 11299194 11299222 -74396532 + (CAAAG)n Simple_repeat Simple_repeat 2 29 0 395 247 0 0 chr15 11299351 11299424 -74396330 + L1MC3 LINE L1 7115 7187 -598 2966 88 21 19 chr15 11299431 11299861 -74395893 + MLT2A1 LTR ERVL 14 444 0 3229 171 22 3 chr15 11299864 11300455 -74395299 + L1MC3 LINE L1 7184 7785 0 335 275 42 35 chr15 11301628 11301770 -74393984 + L2 LINE L2 2621 2763 -551 608 329 71 45 chr15 11301828 11302248 -74393506 - LTR16C LTR ERVL -58 433 3 323 281 21 10 chr15 11302300 11302396 -74393358 - LTR33 LTR ERVL 0 521 425 387 324 34 0 chr15 11302494 11302642 -74393112 - LTR33 LTR ERVL -256 265 113 413 277 8 25 chr15 11302744 11302863 -74392891 + L2 LINE L2 3190 3306 -7 1602 273 36 11 chr15 11303559 11303999 -74391755 + MLT1C LTR MaLR 17 467 0 2351 93 0 3 chr15 11304086 11304388 -74391366 - AluSq SINE Alu -12 301 1 341 304 32 16 chr15 11304654 11304779 -74390975 - L2 LINE L2 -12 3301 3175 205 360 52 33 chr15 11304834 11305140 -74390614 - L2 LINE L2 -534 2780 2469 1229 167 11 61 chr15 11305607 11305870 -74389884 + AluJo SINE Alu 44 293 -19 36 53 0 0 chr15 11306088 11306145 -74389609 + AT_rich Low_complexity Low_complexity 1 57 0 421 192 8 80 chr15 11307539 11307664 -74388090 - AluSq/x SINE Alu -187 125 10 26 50 0 0 chr15 11307786 11307826 -74387928 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr15 11307870 11307899 -74387855 + AT_rich Low_complexity Low_complexity 1 29 0 1021 171 23 0 chr15 11308081 11308256 -74387498 - L1PA16 LINE L1 -4 6162 5984 2241 119 0 3 chr15 11308456 11308766 -74386988 + AluSc SINE Alu 1 309 0 28 61 0 0 chr15 11309146 11309195 -74386559 + AT_rich Low_complexity Low_complexity 1 49 0 2485 186 166 33 chr15 11309275 11309455 -74386299 + Charlie1a DNA MER1_type 67 222 -2539 1891 147 14 3 chr15 11309455 11309740 -74386014 + AluJb SINE Alu 9 296 -16 2485 186 166 33 chr15 11309740 11310308 -74385446 + Charlie1a DNA MER1_type 222 914 -541 1251 158 0 37 chr15 11310312 11310527 -74385227 + AluJb SINE Alu 87 293 -19 249 57 0 0 chr15 11310529 11310564 -74385190 + (TA)n Simple_repeat Simple_repeat 1 35 0 947 183 245 9 chr15 11310584 11310907 -74384847 + Charlie1a DNA MER1_type 1057 1455 0 2367 95 0 0 chr15 11311381 11311677 -74384077 + AluSq SINE Alu 1 296 -17 241 250 90 30 chr15 11312034 11312134 -74383620 + L1ME4a LINE L1 5972 6077 -44 2191 121 3 0 chr15 11312976 11313281 -74382473 + AluSg SINE Alu 1 306 -4 192 40 0 0 chr15 11313518 11313543 -74382211 + (CA)n Simple_repeat Simple_repeat 2 26 0 1868 137 10 17 chr15 11315151 11315451 -74380303 - AluJo SINE Alu -14 298 1 447 19 0 0 chr15 11318354 11318406 -74377348 + (CA)n Simple_repeat Simple_repeat 1 52 0 2304 157 218 6 chr15 11318407 11318898 -74376856 - MER7C DNA MER2_type -5 597 3 691 257 225 17 chr15 11320634 11320980 -74374774 - L2 LINE L2 0 3313 2896 29 60 0 0 chr15 11324266 11324316 -74371438 + GC_rich Low_complexity Low_complexity 1 50 0 324 305 75 78 chr15 11324698 11325032 -74370722 - L1M2 LINE L1 -5881 968 636 6486 48 8 12 chr15 11326435 11327747 -74368007 + L1PA5 LINE L1 4899 6166 -2 333 380 23 12 chr15 11328078 11328249 -74367505 - MIR SINE MIR 0 262 90 2403 65 19 13 chr15 11328253 11328560 -74367194 - AluY SINE Alu -1 310 2 1968 122 45 50 chr15 11329118 11329495 -74366259 - THE1C LTR MaLR 0 375 1 345 348 39 26 chr15 11329567 11329722 -74366032 - MIR SINE MIR -88 174 18 1883 151 29 26 chr15 11330004 11330315 -74365439 - AluSx SINE Alu 0 312 1 1409 51 0 6 chr15 11330787 11330964 -74364790 + L1PA6 LINE L1 5972 6147 -7 1903 292 39 42 chr15 11331342 11331669 -74364085 + L2 LINE L2 1852 2178 -1136 1156 171 9 48 chr15 11331669 11331897 -74363857 - MER20 DNA MER1_type 0 219 1 1903 292 39 42 chr15 11331897 11332384 -74363370 + L2 LINE L2 2178 2664 -650 210 37 0 0 chr15 11332478 11332505 -74363249 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 2167 123 7 7 chr15 11332588 11332898 -74362856 - AluSg SINE Alu 0 310 1 332 327 18 0 chr15 11332915 11333025 -74362729 + L2 LINE L2 2763 2874 -440 427 295 4 88 chr15 11333157 11333243 -74362511 - L1M4 LINE L1 -1016 5130 5038 1653 74 5 18 chr15 11333243 11333460 -74362294 - AluSp SINE Alu -9 304 91 427 295 4 88 chr15 11333460 11333600 -74362154 - L1M4 LINE L1 -1108 5038 4923 1782 242 73 27 chr15 11333601 11333636 -74362118 - L1M4 LINE L1 -1577 4569 4537 2519 62 0 0 chr15 11333636 11333942 -74361812 - AluY SINE Alu -5 306 1 1782 242 73 27 chr15 11333942 11334655 -74361099 - L1M4 LINE L1 -1609 4537 3786 363 297 51 6 chr15 11334695 11334870 -74360884 + L1ME LINE L1 5509 5691 -430 1560 211 29 29 chr15 11335203 11335577 -74360177 - MLT1A2 LTR MaLR 0 374 1 2155 121 3 6 chr15 11336071 11336384 -74359370 + AluSx SINE Alu 1 312 0 1107 178 123 105 chr15 11336843 11337292 -74358462 - MSTB2 LTR MaLR 0 457 1 198 0 0 0 chr15 11337321 11337343 -74358411 + (TA)n Simple_repeat Simple_repeat 2 23 0 284 250 0 0 chr15 11337343 11337427 -74358327 - L1MC4 LINE L1 -1339 6703 6620 212 152 43 0 chr15 11337452 11337498 -74358256 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 1153 119 161 23 chr15 11337828 11338046 -74357708 - AluSx SINE Alu -64 248 1 21 0 0 0 chr15 11338449 11338470 -74357284 + AT_rich Low_complexity Low_complexity 1 21 0 4432 161 44 27 chr15 11338610 11338776 -74356978 - L1MA8 LINE L1 -4 6287 6125 180 0 0 0 chr15 11338776 11338796 -74356958 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1971 124 3 11 chr15 11338800 11339082 -74356672 - AluSx SINE Alu -32 280 1 4432 161 44 27 chr15 11339082 11339859 -74355895 - L1MA8 LINE L1 -168 6123 5323 430 265 51 0 chr15 11339977 11340094 -74355660 - L2 LINE L2 0 3313 3191 330 271 31 0 chr15 11340943 11341039 -74354715 - LTR33A LTR ERVL -361 162 64 1212 326 55 8 chr15 11341706 11342326 -74353428 - ERVL LTR ERVL -395 5369 4721 24 32 0 0 chr15 11342455 11342486 -74353268 + AT_rich Low_complexity Low_complexity 1 31 0 336 242 97 66 chr15 11342658 11342885 -74352869 - HAL1 LINE L1 0 2507 2274 23 0 0 0 chr15 11343997 11344020 -74351734 + AT_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chr15 11344047 11344091 -74351663 + AT_rich Low_complexity Low_complexity 1 44 0 2189 128 31 6 chr15 11344795 11345155 -74350599 - L1PA11 LINE L1 -4 6170 5802 3613 93 4 2 chr15 11345257 11345764 -74349990 + L1PA5 LINE L1 5640 6147 -7 303 241 205 0 chr15 11345777 11345889 -74349865 + L1M4 LINE L1 4487 4621 -1525 3228 26 0 0 chr15 11345932 11346310 -74349444 + L1PA5 LINE L1 5770 6147 -7 198 0 0 0 chr15 11346956 11346978 -74348776 + (A)n Simple_repeat Simple_repeat 1 22 0 317 102 17 0 chr15 11348585 11348644 -74347110 + (CCG)n Simple_repeat Simple_repeat 1 60 0 410 284 0 15 chr15 11348684 11348818 -74346936 + (CCG)n Simple_repeat Simple_repeat 3 134 0 5151 101 5 4 chr15 11349370 11350123 -74345631 + L1PA13 LINE L1 5405 6158 -5 1661 111 111 0 chr15 11350331 11350592 -74345162 - AluSg SINE Alu -20 290 1 24 77 0 0 chr15 11352434 11352486 -74343268 + GC_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr15 11356897 11356926 -74338828 + AT_rich Low_complexity Low_complexity 1 29 0 1259 303 96 57 chr15 11357843 11358912 -74336842 - L2 LINE L2 0 3313 2183 207 0 0 0 chr15 11359560 11359583 -74336171 + (TC)n Simple_repeat Simple_repeat 1 23 0 237 260 0 0 chr15 11360539 11360589 -74335165 + L2 LINE L2 2271 2320 -994 198 360 36 36 chr15 11360726 11360837 -74334917 + MIR SINE MIR 16 126 -82 4256 177 33 27 chr15 11363403 11364371 -74331383 - L1MC2 LINE L1 -8 6336 5363 1942 117 20 17 chr15 11364426 11364724 -74331030 - AluSx SINE Alu -13 299 1 24 32 0 0 chr15 11365348 11365379 -74330375 + AT_rich Low_complexity Low_complexity 1 31 0 32 57 0 0 chr15 11366417 11366470 -74329284 + AT_rich Low_complexity Low_complexity 1 53 0 229 268 18 0 chr15 11367120 11367176 -74328578 - MIR SINE MIR -2 260 204 241 292 42 42 chr15 11367229 11367301 -74328453 - MIR SINE MIR -169 93 22 294 304 62 88 chr15 11367545 11367805 -74327949 + MIR SINE MIR 3 255 -7 259 182 0 18 chr15 11368063 11368118 -74327636 - MER112 DNA MER1_type -7 253 200 186 43 0 0 chr15 11368253 11368276 -74327478 + (TATG)n Simple_repeat Simple_repeat 2 24 0 212 145 133 24 chr15 11368435 11368518 -74327236 + (TTAAA)n Simple_repeat Simple_repeat 1 92 0 264 77 0 0 chr15 11368555 11368594 -74327160 + (CA)n Simple_repeat Simple_repeat 2 40 0 260 274 24 43 chr15 11368712 11368876 -74326878 + (CAGAGA)n Simple_repeat Simple_repeat 2 162 0 22 0 0 0 chr15 11370150 11370172 -74325582 + AT_rich Low_complexity Low_complexity 1 22 0 2061 115 3 16 chr15 11370769 11371073 -74324681 - AluSx SINE Alu -12 300 1 243 286 105 0 chr15 11371306 11371411 -74324343 - MIR SINE MIR -56 206 91 187 350 60 10 chr15 11371815 11371915 -74323839 + MER5B DNA MER1_type 24 128 -50 201 244 11 111 chr15 11373662 11373752 -74322002 + L2 LINE L2 3190 3270 -2 311 310 50 0 chr15 11375427 11375527 -74320227 + L1ME LINE L1 5719 5823 -298 206 271 0 34 chr15 11377238 11377297 -74318457 - MIR SINE MIR -63 145 89 216 227 0 0 chr15 11429021 11429065 -74266689 - L2 LINE L2 -209 3063 3020 1015 309 111 38 chr15 11429112 11429763 -74265991 - L2 LINE L2 -720 2594 1897 261 213 33 0 chr15 11429763 11429824 -74265930 - MLT2D LTR ERVL 0 520 458 1674 143 23 27 chr15 11429881 11430181 -74265573 - MLT2D LTR ERVL -50 364 66 525 125 10 10 chr15 11430214 11430310 -74265444 - MLT2D LTR ERVL -318 96 1 245 307 11 0 chr15 11430311 11430399 -74265355 - L2 LINE L2 -1414 1900 1812 555 246 8 0 chr15 11430416 11430534 -74265220 + MER5B DNA MER1_type 7 125 -53 442 211 11 22 chr15 11430600 11430690 -74265064 - MER5A DNA MER1_type -92 97 9 328 341 38 34 chr15 11430684 11430948 -74264806 - L2 LINE L2 -1503 1811 1547 * 277 381 46 55 chr15 11430983 11431350 -74264404 - L2 LINE L2 -353 2961 2598 357 24 0 0 chr15 11431528 11431570 -74264184 + (GA)n Simple_repeat Simple_repeat 2 43 0 351 278 74 14 chr15 11431939 11432115 -74263639 + MIR SINE MIR 15 245 -17 1151 194 29 7 chr15 11432624 11432897 -74262857 + L1MD2 LINE L1 3569 3847 -2299 356 130 0 0 chr15 11432899 11432968 -74262786 + L1MB4 LINE L1 6112 6180 0 4557 215 29 29 chr15 11432969 11434443 -74261311 + L1MD2 LINE L1 4212 5706 -653 1138 73 7 0 chr15 11434443 11434594 -74261160 - L1PA5 LINE L1 -6 6148 5997 4557 215 29 29 chr15 11434594 11435221 -74260533 + L1MD2 LINE L1 5706 6331 -28 2897 195 25 62 chr15 11435233 11435348 -74260406 + L1ME1 LINE L1 5186 5304 -1008 937 178 6 6 chr15 11435348 11435511 -74260243 + FAM SINE Alu 5 167 -8 2897 195 25 62 chr15 11435511 11436403 -74259351 + L1ME1 LINE L1 5304 6288 -24 1744 141 43 7 chr15 11436654 11436931 -74258823 - AluJo SINE Alu -25 287 1 195 42 0 0 chr15 11437088 11437112 -74258642 + (TA)n Simple_repeat Simple_repeat 2 25 0 259 277 43 90 chr15 11438494 11438634 -74257120 - L2 LINE L2 -101 3212 3082 1678 134 52 4 chr15 11438634 11438903 -74256851 - AluJo SINE Alu -20 292 11 259 277 43 90 chr15 11438903 11438950 -74256804 - L2 LINE L2 -231 3082 3034 527 278 82 12 chr15 11439265 11439520 -74256234 - Charlie7 DNA MER1_type -1912 700 428 398 256 73 22 chr15 11440678 11440815 -74254939 - MLT1L LTR MaLR -337 278 135 1626 143 13 57 chr15 11440869 11441169 -74254585 + AluJb SINE Alu 1 287 -25 235 298 81 40 chr15 11441283 11441407 -74254347 - L2 LINE L2 -241 3031 2903 251 170 0 0 chr15 11442932 11442979 -74252775 + MER4B-int LTR ERV1 1150 1196 -5562 1898 146 0 3 chr15 11443004 11443291 -74252463 - AluJb SINE Alu -26 286 1 756 217 133 4 chr15 11444087 11444313 -74251441 + MLT1L LTR MaLR 357 611 -4 303 323 49 61 chr15 11444645 11444809 -74250945 + MIR SINE MIR 66 227 -35 374 183 0 75 chr15 11445044 11445137 -74250617 - MER103 DNA DNA -70 96 11 338 330 75 64 chr15 11445221 11445688 -74250066 + L2 LINE L2 2429 2900 -414 331 284 19 65 chr15 11447039 11447194 -74248560 - MIR3 SINE MIR -1 207 60 223 396 27 9 chr15 11447678 11447789 -74247965 + L2 LINE L2 3132 3244 -28 282 274 76 3 chr15 11447790 11447943 -74247811 + MER63A DNA MER1_type 2 210 0 755 345 24 23 chr15 11448343 11448844 -74246910 - L2 LINE L2 -226 3046 2551 180 214 0 0 chr15 11448868 11448910 -74246844 - L2 LINE L2 -887 2427 2386 851 288 130 39 chr15 11448939 11449484 -74246270 - L2 LINE L2 -1190 2124 1530 509 297 78 18 chr15 11449788 11450007 -74245747 - L2 LINE L2 -1789 1525 1294 317 243 14 0 chr15 11450320 11450394 -74245360 + MER5C DNA MER1_type 1 75 -249 482 254 66 55 chr15 11450579 11450835 -74244919 - MER112 DNA MER1_type 0 260 2 474 191 59 29 chr15 11451266 11451402 -74244352 - MER53 DNA DNA 0 189 50 * 504 102 110 25 chr15 11451399 11451517 -74244237 - MER53 DNA DNA -61 128 1 265 125 0 71 chr15 11451528 11451584 -74244170 - MER69 DNA AcHobo -29 2497 2446 * 432 273 14 7 chr15 11451577 11451720 -74244034 - MER69 DNA AcHobo -1079 147 4 214 179 26 0 chr15 11451880 11451919 -74243835 + GA-rich Low_complexity Low_complexity 4 43 0 275 311 13 7 chr15 11451925 11452076 -74243678 + Charlie2 DNA MER1_type 129 280 -2582 574 212 42 16 chr15 11452254 11452447 -74243307 + Charlie2a DNA MER1_type 1465 1662 -1200 1094 157 10 29 chr15 11452529 11452733 -74243021 + AluJo SINE Alu 1 200 -112 204 40 0 0 chr15 11452733 11452758 -74242996 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 235 327 153 0 chr15 11453777 11453927 -74241827 + MIR SINE MIR 88 260 -2 2114 194 33 98 chr15 11454840 11455506 -74240248 + MER63C DNA MER1_type 1 623 -307 890 110 0 0 chr15 11455507 11455625 -74240129 + AluSc SINE Alu 186 303 -6 732 162 112 20 chr15 11455627 11455824 -74239930 + MER63C DNA MER1_type 617 831 -99 434 72 0 14 chr15 11455825 11455894 -74239860 - Alu SINE Alu -7 305 238 807 176 0 8 chr15 11455914 11456039 -74239715 - FLAM_C SINE Alu -19 124 1 295 257 40 10 chr15 11456039 11456140 -74239614 + MER63C DNA MER1_type 823 926 -4 390 305 61 12 chr15 11456261 11456425 -74239329 + MLT1L LTR MaLR 153 324 -291 2216 116 13 0 chr15 11456741 11457043 -74238711 + AluSx SINE Alu 1 306 -6 781 297 38 4 chr15 11457075 11457314 -74238440 + MIR SINE MIR 15 261 -1 320 0 0 24 chr15 11457501 11457542 -74238212 + (TTG)n Simple_repeat Simple_repeat 2 41 0 590 328 96 63 chr15 11457917 11458409 -74237345 + L2 LINE L2 2523 3028 -285 317 339 23 39 chr15 11458463 11458593 -74237161 + L2 LINE L2 3185 3312 -1 441 81 0 0 chr15 11458651 11458713 -74237041 + (CA)n Simple_repeat Simple_repeat 1 62 0 26 0 0 0 chr15 11458720 11458746 -74237008 + AT_rich Low_complexity Low_complexity 1 26 0 1311 241 59 14 chr15 11458777 11459423 -74236331 - L1MEc LINE L1 -2875 3340 2622 1731 148 96 42 chr15 11459458 11459520 -74236234 - LTR47A LTR ERVL -46 406 349 2438 65 0 31 chr15 11459520 11459841 -74235913 + AluY SINE Alu 1 311 0 1731 148 96 42 chr15 11459841 11460163 -74235591 - LTR47A LTR ERVL -103 349 1 2436 244 48 28 chr15 11460166 11460917 -74234837 - L1MEc LINE L1 -3612 2603 1869 1772 187 42 34 chr15 11460917 11461302 -74234452 + MLT1B LTR MaLR 1 388 -2 2436 244 48 28 chr15 11461302 11461444 -74234310 - L1MEc LINE L1 -4346 1869 1731 2798 93 0 0 chr15 11461444 11461808 -74233946 + THE1B LTR MaLR 1 364 0 2436 244 48 28 chr15 11461808 11462055 -74233699 - L1MEc LINE L1 -4484 1731 1477 793 53 26 0 chr15 11462056 11462170 -74233584 + (TTTC)n Simple_repeat Simple_repeat 1 117 0 621 238 91 27 chr15 11462265 11462465 -74233289 + MIR SINE MIR 13 211 -51 354 263 63 33 chr15 11462525 11462854 -74232900 - LTR67 LTR ERVL -29 528 151 3171 158 140 3 chr15 11463206 11463828 -74231926 - MER39 LTR ERV1 0 707 1 22 0 0 0 chr15 11465397 11465419 -74230335 + AT_rich Low_complexity Low_complexity 1 22 0 491 296 169 5 chr15 11465424 11465637 -74230117 - MIR SINE MIR -11 251 4 6002 86 19 14 chr15 11465793 11466895 -74228859 + L1PA14 LINE L1 5051 6156 -5 2444 68 0 16 chr15 11467026 11467336 -74228418 - AluY SINE Alu -2 309 5 260 196 20 0 chr15 11467582 11467633 -74228121 - L2 LINE L2 0 3313 3262 2450 145 97 31 chr15 11468692 11469238 -74226516 + MER34C LTR ERV1 1 582 -3 2272 148 16 0 chr15 11469440 11469826 -74225928 - MER57A LTR ERV1 -11 392 1 191 229 0 0 chr15 11470277 11470312 -74225442 - L2 LINE L2 -16 3297 3263 1450 153 80 4 chr15 11470497 11470746 -74225008 - AluJo SINE Alu -44 268 1 186 348 79 11 chr15 11470870 11470959 -74224795 - MIR3 SINE MIR -7 201 107 2175 109 0 10 chr15 11470964 11471266 -74224488 - AluSx SINE Alu -13 299 1 192 293 81 40 chr15 11472511 11472610 -74223144 - MIR SINE MIR -63 145 43 402 162 0 0 chr15 11472695 11472769 -74222985 + CT-rich Low_complexity Low_complexity 3 76 0 1340 165 81 84 chr15 11472773 11473070 -74222684 - AluJo SINE Alu -16 296 1 352 214 12 0 chr15 11474281 11474365 -74221389 + FAM SINE Alu 85 169 -6 323 229 9 73 chr15 11475675 11475784 -74219970 + L1ME4a LINE L1 5944 6045 -76 1677 174 4 4 chr15 11475835 11476105 -74219649 + AluJb SINE Alu 1 270 -42 243 0 0 0 chr15 11476105 11476132 -74219622 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 180 348 0 0 chr15 11478225 11478271 -74217483 - L2 LINE L2 -6 3307 3262 222 229 0 0 chr15 11478314 11478362 -74217392 - L2 LINE L2 -3 3310 3263 225 354 56 13 chr15 11478612 11478750 -74217004 - MIR SINE MIR -58 150 40 195 42 0 0 chr15 11479694 11479718 -74216036 + (A)n Simple_repeat Simple_repeat 1 24 0 192 77 0 0 chr15 11481885 11481911 -74213843 + (TC)n Simple_repeat Simple_repeat 2 27 0 255 227 136 0 chr15 11481979 11482045 -74213709 - MIR SINE MIR -80 128 54 210 37 0 0 chr15 11482309 11482336 -74213418 + (TG)n Simple_repeat Simple_repeat 2 28 0 261 83 0 0 chr15 11483791 11483827 -74211927 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 627 184 0 142 chr15 11483993 11484059 -74211695 - MIR SINE MIR 0 262 188 1402 149 50 4 chr15 11484059 11484340 -74211414 - L1MB3 LINE L1 0 6183 5890 627 184 0 142 chr15 11484340 11484463 -74211291 - MIR SINE MIR -74 188 100 297 211 66 0 chr15 11485707 11485783 -74209971 - L1MA9 LINE L1 -5 6307 6227 2242 119 3 0 chr15 11485951 11486263 -74209491 - AluSq SINE Alu 0 313 1 425 353 95 22 chr15 11487958 11488190 -74207564 - MIR SINE MIR -13 249 1 312 263 13 0 chr15 11489027 11489103 -74206651 - MER5A DNA MER1_type -103 86 10 281 295 93 58 chr15 11489363 11489502 -74206252 + MER5B DNA MER1_type 2 145 -33 2074 179 69 18 chr15 11489794 11490229 -74205525 - MLT2B1 LTR ERVL -63 457 1 2158 109 3 0 chr15 11490348 11490631 -74205123 + AluSx SINE Alu 1 284 -28 22 0 0 0 chr15 11490632 11490654 -74205100 + AT_rich Low_complexity Low_complexity 1 22 0 540 116 0 0 chr15 11491181 11491267 -74204487 + L1MA9 LINE L1 5940 6025 -287 2241 109 7 0 chr15 11491290 11491593 -74204161 + AluSg SINE Alu 3 307 -3 185 211 53 0 chr15 11492110 11492148 -74203606 + MIR SINE MIR 196 235 -27 217 300 58 67 chr15 11492336 11492400 -74203354 + L2 LINE L2 3154 3218 -54 985 193 14 5 chr15 11492400 11492607 -74203147 + MER3 DNA MER1_type 1 209 0 217 300 58 67 chr15 11492607 11492662 -74203092 + L2 LINE L2 3218 3272 0 1692 162 0 88 chr15 11493287 11493626 -74202128 - AluJb SINE Alu -3 309 1 1379 178 66 3 chr15 11493887 11494173 -74201581 + L1MB4 LINE L1 5862 6165 -15 223 353 95 9 chr15 11494596 11494712 -74201042 - L3b LINE CR1 -14 1569 1444 1824 164 3 3 chr15 11494730 11495023 -74200731 - AluJb SINE Alu -19 293 1 1793 247 104 14 chr15 11495224 11495799 -74199955 - MLT2E LTR ERVL -1 627 1 2156 64 0 48 chr15 11496265 11496589 -74199165 + AluY SINE Alu 1 310 0 1989 149 0 7 chr15 11496812 11497108 -74198646 + AluJo SINE Alu 1 294 -18 3311 155 17 38 chr15 11497705 11498457 -74197297 - L1MA4 LINE L1 0 6171 5400 390 299 85 23 chr15 11499728 11499905 -74195849 + MIR SINE MIR 52 239 -23 227 111 0 44 chr15 11500929 11500974 -74194780 + (TTCTCC)n Simple_repeat Simple_repeat 3 45 0 470 296 5 70 chr15 11501059 11501272 -74194482 + MIR SINE MIR 3 201 -61 254 320 144 0 chr15 11501289 11501386 -74194368 - MIR SINE MIR -69 139 29 1230 278 51 35 chr15 11501433 11501926 -74193828 + MLT1K LTR MaLR 16 516 -72 745 295 32 0 chr15 11502330 11502547 -74193207 - MIR SINE MIR -3 259 36 973 145 0 0 chr15 11502668 11502806 -74192948 - FAM SINE Alu -19 166 29 432 227 98 23 chr15 11502925 11503057 -74192697 + MIR SINE MIR 85 226 -36 243 88 0 0 chr15 11503059 11503093 -74192661 + (CAT)n Simple_repeat Simple_repeat 2 35 0 189 107 0 0 chr15 11503218 11503246 -74192508 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 247 223 53 53 chr15 11504353 11504447 -74191307 - HAL1b LINE L1 -3 1345 1252 490 231 148 14 chr15 11504599 11504815 -74190939 - L1ME LINE L1 -315 5806 5562 1565 152 80 7 chr15 11504816 11505092 -74190662 - AluJo SINE Alu -16 296 1 183 298 0 0 chr15 11505138 11505185 -74190569 - MIR SINE MIR -138 124 78 1234 224 32 4 chr15 11506264 11506541 -74189213 + AluSx SINE Alu 1 285 -27 215 288 123 71 chr15 11507244 11507414 -74188340 - MER5A DNA MER1_type -2 187 9 293 336 67 34 chr15 11507686 11507835 -74187919 + MER5A DNA MER1_type 29 182 -7 1874 148 3 13 chr15 11509042 11509352 -74186402 + AluSx SINE Alu 1 307 -5 221 95 0 24 chr15 11509537 11509579 -74186175 + (ATTG)n Simple_repeat Simple_repeat 4 44 0 1469 122 5 0 chr15 11509579 11509776 -74185978 - AluSg/x SINE Alu -32 280 83 252 306 57 64 chr15 11510244 11510401 -74185353 - MIR SINE MIR -19 243 88 184 260 49 98 chr15 11510641 11510764 -74184990 + L2 LINE L2 3156 3272 0 2099 106 0 3 chr15 11511772 11512087 -74183667 + AluSx SINE Alu 1 314 0 4063 186 13 30 chr15 11512091 11513007 -74182747 - Tigger1 DNA MER2_type -357 2061 1161 2432 93 3 0 chr15 11513909 11514220 -74181534 - AluSx SINE Alu 0 312 1 774 284 36 25 chr15 11514275 11514553 -74181201 + ERVL LTR ERVL 4873 5153 -611 198 397 0 0 chr15 11514708 11514786 -74180968 + L2 LINE L2 3220 3297 -16 23 0 0 0 chr15 11514955 11514978 -74180776 + AT_rich Low_complexity Low_complexity 1 23 0 622 312 119 0 chr15 11515163 11515432 -74180322 + LTR33A LTR ERVL 223 523 0 21 0 0 0 chr15 11515860 11515881 -74179873 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr15 11516161 11516191 -74179563 + AT_rich Low_complexity Low_complexity 1 30 0 2287 126 0 0 chr15 11516240 11516550 -74179204 + AluSx SINE Alu 1 310 -2 675 292 18 4 chr15 11517623 11517897 -74177857 - HAL1 LINE L1 -293 2214 1937 1241 244 62 5 chr15 11517972 11518357 -74177397 - HAL1 LINE L1 -713 1794 1388 362 244 120 81 chr15 11518389 11518647 -74177107 - HAL1 LINE L1 -1882 625 358 404 219 67 55 chr15 11518656 11518820 -74176934 - LTR45B LTR ERV1 0 489 324 2218 112 0 0 chr15 11519304 11519600 -74176154 - AluSx SINE Alu -16 296 1 222 91 0 0 chr15 11519637 11519670 -74176084 + (A)n Simple_repeat Simple_repeat 1 33 0 3028 211 51 12 chr15 11519672 11520878 -74174876 + L1MC4a LINE L1 4407 5656 -510 883 233 0 58 chr15 11520893 11521206 -74174548 + L1ME1 LINE L1 5870 6164 -2 380 274 10 10 chr15 11522102 11522204 -74173550 - MER5A DNA MER1_type -6 183 82 202 301 6 14 chr15 11522889 11522961 -74172793 + MER5B DNA MER1_type 24 107 -82 391 234 109 30 chr15 11523257 11523458 -74172296 + L1MC4a LINE L1 5855 6071 -1737 670 231 63 89 chr15 11523599 11523868 -74171886 + MIR SINE MIR 1 262 0 1029 108 0 0 chr15 11523881 11524011 -74171743 - AluJo SINE Alu -178 134 5 240 175 0 0 chr15 11524843 11524883 -74170871 + Tigger4(Zombi) DNA MER2_type 1 40 -2691 195 266 62 62 chr15 11524913 11524977 -74170777 + L2 LINE L2 3227 3290 -23 22 0 0 0 chr15 11525889 11525911 -74169843 + AT_rich Low_complexity Low_complexity 1 22 0 342 360 32 8 chr15 11526208 11526333 -74169421 + L2 LINE L2 3143 3270 -2 3210 148 36 8 chr15 11526784 11527394 -74168360 + L1MB8 LINE L1 5552 6178 0 290 230 56 56 chr15 11529135 11529261 -74166493 + L2 LINE L2 3124 3249 -64 1624 187 0 0 chr15 11529403 11529676 -74166078 + AluJb SINE Alu 40 312 0 762 254 243 6 chr15 11531060 11531402 -74164352 + L2 LINE L2 2863 3285 -28 381 311 85 12 chr15 11532166 11532330 -74163424 - MIR SINE MIR -64 198 23 2249 66 42 7 chr15 11532399 11532685 -74163069 + AluY SINE Alu 1 296 -15 215 175 0 0 chr15 11533699 11533739 -74162015 + MIR SINE MIR 153 192 -70 467 316 101 5 chr15 11534512 11534721 -74161033 + L3 LINE CR1 1347 1575 -2 206 286 0 0 chr15 11535025 11535067 -74160687 + polypurine Low_complexity Low_complexity 6 47 0 555 264 80 10 chr15 11535177 11535378 -74160376 - MIR SINE MIR -18 244 30 204 345 0 0 chr15 11535354 11535412 -74160342 + L2 LINE L2 3215 3272 0 * 204 40 0 0 chr15 11536547 11536572 -74159182 + (CA)n Simple_repeat Simple_repeat 2 26 0 621 227 0 8 chr15 11536624 11536743 -74159011 + FLAM_C SINE Alu 1 118 -15 180 0 0 0 chr15 11536748 11536768 -74158986 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 469 271 115 71 chr15 11536919 11537187 -74158567 + L1ME4a LINE L1 5561 5816 -305 1891 154 17 0 chr15 11537187 11537480 -74158274 - AluSx SINE Alu -14 298 1 469 271 115 71 chr15 11537480 11537705 -74158049 + L1ME4a LINE L1 5816 6076 -45 204 261 0 0 chr15 11538353 11538399 -74157355 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2382 70 3 7 chr15 11538526 11538825 -74156929 - AluY SINE Alu -13 298 1 181 191 127 32 chr15 11539571 11539634 -74156120 + MIR3 SINE MIR 10 78 -130 239 306 57 64 chr15 11540197 11540354 -74155400 + MIR SINE MIR 88 243 -19 850 210 6 25 chr15 11541058 11541220 -74154534 + AluJb SINE Alu 136 294 -18 270 0 0 0 chr15 11541992 11542022 -74153732 + (A)n Simple_repeat Simple_repeat 1 30 0 297 0 0 0 chr15 11542022 11542055 -74153699 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 414 0 0 0 chr15 11542054 11542100 -74153654 + (GA)n Simple_repeat Simple_repeat 2 47 0 309 300 0 0 chr15 11543539 11543619 -74152135 - MER5B DNA MER1_type -50 128 49 363 286 7 50 chr15 11543783 11543923 -74151831 - MER94 DNA DNA 0 134 1 2126 114 51 102 chr15 11543955 11544366 -74151388 + MLT1B LTR MaLR 1 390 0 201 347 13 53 chr15 11544746 11544896 -74150858 - L2 LINE L2 -181 3091 2948 283 343 17 41 chr15 11544976 11545148 -74150606 - L3b LINE CR1 -237 1346 1179 214 256 0 0 chr15 11545198 11545241 -74150513 + (CA)n Simple_repeat Simple_repeat 2 44 0 961 226 67 0 chr15 11546154 11546349 -74149405 - MER3 DNA MER1_type -1 208 1 186 103 0 0 chr15 11547177 11547206 -74148548 + (TG)n Simple_repeat Simple_repeat 2 30 0 261 0 0 0 chr15 11547758 11547787 -74147967 + (A)n Simple_repeat Simple_repeat 1 29 0 322 359 8 15 chr15 11553167 11553298 -74142456 + MER5B DNA MER1_type 12 141 -37 210 373 59 13 chr15 11553344 11553497 -74142257 - MIR3 SINE MIR -16 192 33 882 227 6 17 chr15 11556489 11556665 -74139089 + MER5B DNA MER1_type 2 175 -3 659 281 108 67 chr15 11557771 11558426 -74137328 - L2 LINE L2 0 3313 2631 15264 136 22 26 chr15 11558463 11558575 -74137179 - Tigger1 DNA MER2_type 0 2418 2307 1649 181 7 0 chr15 11558575 11558889 -74136865 + AluJo SINE Alu 1 316 0 15264 136 22 26 chr15 11558889 11559140 -74136614 - Tigger1 DNA MER2_type -111 2307 2057 2092 115 0 7 chr15 11559140 11559456 -74136298 + AluSx SINE Alu 1 314 0 15264 136 22 26 chr15 11559456 11560932 -74134822 - Tigger1 DNA MER2_type -361 2057 585 2282 77 0 17 chr15 11560932 11561231 -74134523 - AluSc SINE Alu -15 294 1 15264 136 22 26 chr15 11561231 11561814 -74133940 - Tigger1 DNA MER2_type -1833 585 1 306 259 118 15 chr15 11562446 11562581 -74133173 + MARNA DNA Mariner 134 282 -304 473 277 54 12 chr15 11562756 11562922 -74132832 + MARNA DNA Mariner 307 479 -107 2815 13 0 0 chr15 11563193 11563499 -74132255 - AluYb8 SINE Alu -12 306 1 811 278 18 21 chr15 11564072 11564533 -74131221 + LTR33 LTR ERVL 12 521 0 191 325 192 35 chr15 11564893 11565096 -74130658 + L2 LINE L2 2810 3044 -269 539 312 102 59 chr15 11565235 11565925 -74129829 + L2 LINE L2 2538 3267 -5 1131 160 29 29 chr15 11566118 11566324 -74129430 - L1PB4 LINE L1 -1 6155 5950 416 260 203 20 chr15 11566356 11566545 -74129209 + MIR SINE MIR 34 255 -7 298 330 10 7 chr15 11566706 11566831 -74128923 - MIR SINE MIR -63 145 25 869 268 48 36 chr15 11566951 11567365 -74128389 - HAL1 LINE L1 -231 2276 1858 1934 246 154 58 chr15 11567383 11568280 -74127474 - HAL1 LINE L1 -766 1741 759 762 176 52 7 chr15 11568311 11568464 -74127290 + MER20 DNA MER1_type 58 217 -2 1463 277 97 15 chr15 11568501 11569139 -74126615 - HAL1 LINE L1 -1790 717 1 380 157 29 0 chr15 11570725 11570795 -74124959 - MLT1A2 LTR MaLR -4 370 299 563 239 113 50 chr15 11572278 11572500 -74123254 + L1ME2 LINE L1 5920 6155 -9 1918 183 133 14 chr15 11572646 11573089 -74122665 + LTR54B LTR ERV1 1 496 -2 737 181 10 57 chr15 11573250 11573443 -74122311 + L1MB8 LINE L1 5992 6175 -3 1113 123 13 0 chr15 11573747 11573942 -74121812 - AluSg/x SINE Alu 0 324 128 2094 96 23 23 chr15 11573944 11574245 -74121509 - AluSx SINE Alu -11 301 1 335 281 144 0 chr15 11574350 11574489 -74121265 - MLT1I LTR MaLR -6 403 245 1685 158 3 50 chr15 11574530 11574847 -74120907 - AluJb SINE Alu 0 312 11 27 0 0 0 chr15 11574920 11574947 -74120807 + AT_rich Low_complexity Low_complexity 1 27 0 356 237 20 13 chr15 11575701 11575853 -74119901 + (TA)n Simple_repeat Simple_repeat 2 154 0 8823 164 27 15 chr15 11575960 11578501 -74117253 - L1PA16 LINE L1 -11 6155 3586 2952 161 51 0 chr15 11578521 11579029 -74116725 + LTR51 LTR ERV1 138 671 0 298 250 0 50 chr15 11579796 11579896 -74115858 + LTR67 LTR ERVL 456 550 -7 320 347 0 21 chr15 11580779 11580874 -74114880 - MIR SINE MIR -90 118 26 2779 125 49 2 chr15 11581051 11581460 -74114294 + MSTA LTR MaLR 1 428 0 234 246 46 15 chr15 11582793 11582858 -74112896 + MLT1K LTR MaLR 253 319 -269 1722 162 95 40 chr15 11582893 11582944 -74112810 - MLT1B LTR MaLR 0 390 343 3079 74 3 13 chr15 11582944 11583323 -74112431 - THE1C LTR MaLR 0 375 1 1722 162 95 40 chr15 11583323 11583641 -74112113 - MLT1B LTR MaLR -47 343 1 21 57 0 0 chr15 11583875 11583910 -74111844 + AT_rich Low_complexity Low_complexity 1 35 0 227 357 36 9 chr15 11584537 11584649 -74111105 + L2 LINE L2 3154 3268 -4 273 311 33 16 chr15 11584817 11584939 -74110815 + MIR SINE MIR 19 142 -66 22 56 0 0 chr15 11586539 11586575 -74109179 + AT_rich Low_complexity Low_complexity 1 36 0 450 0 0 0 chr15 11587112 11587162 -74108592 + (CA)n Simple_repeat Simple_repeat 1 50 0 21 57 0 0 chr15 11591236 11591271 -74104483 + GC_rich Low_complexity Low_complexity 1 35 0 315 259 9 2 chr15 11592385 11592530 -74103224 + MER5A DNA MER1_type 4 189 0 384 271 42 42 chr15 11593086 11593230 -74102524 + MIR SINE MIR 36 179 -83 226 302 266 0 chr15 11593357 11593496 -74102258 - L2 LINE L2 -1 3271 3096 1454 173 0 114 chr15 11594032 11594384 -74101370 - AluJo SINE Alu 0 312 1 522 188 10 0 chr15 11594611 11594712 -74101042 - L1MB2 LINE L1 0 6171 6070 287 306 35 12 chr15 11594820 11594905 -74100849 - MIR SINE MIR -164 98 12 257 344 10 10 chr15 11594939 11595035 -74100719 + MER5A DNA MER1_type 7 102 -87 2115 110 45 0 chr15 11596039 11596330 -74099424 - AluSx SINE Alu -6 306 3 829 141 7 30 chr15 11596938 11597073 -74098681 - AluJb SINE Alu -179 133 2 182 192 19 0 chr15 11597425 11597477 -74098277 + T-rich Low_complexity Low_complexity 2 54 0 1809 172 7 3 chr15 11597662 11597964 -74097790 + AluJb SINE Alu 1 303 -9 23 33 0 0 chr15 11598672 11598702 -74097052 + AT_rich Low_complexity Low_complexity 1 30 0 281 257 0 29 chr15 11600555 11600625 -74095129 - L2 LINE L2 0 3313 3246 219 333 0 0 chr15 11600951 11601002 -74094752 - L2 LINE L2 -5 3267 3217 202 221 263 11 chr15 11601464 11601559 -74094195 - L3b LINE CR1 -216 1367 1249 1133 308 49 39 chr15 11602005 11602622 -74093132 + L1MDa LINE L1 20 642 -5898 4896 48 17 2 chr15 11602887 11603905 -74091849 - MER11A LTR ERVK 0 1266 1 4881 203 72 53 chr15 11603953 11604565 -74091189 + L1MDa LINE L1 872 1471 -5069 1879 173 3 3 chr15 11604565 11604877 -74090877 + AluJb SINE Alu 1 312 0 4881 203 72 53 chr15 11604877 11605737 -74090017 + L1MDa LINE L1 1471 2372 -4168 1729 213 79 37 chr15 11605739 11606167 -74089587 + L1MD2 LINE L1 5902 6347 -12 637 199 128 26 chr15 11607031 11607187 -74088567 - MER5B DNA MER1_type -6 172 1 912 229 6 0 chr15 11607199 11607374 -74088380 - MER5A DNA MER1_type -4 185 10 308 328 38 8 chr15 11607497 11607628 -74088126 + MIR SINE MIR 43 177 -85 1914 125 0 0 chr15 11607652 11607908 -74087846 - AluSx SINE Alu -55 257 2 714 244 88 19 chr15 11607938 11608143 -74087611 - MIR SINE MIR -41 221 3 261 298 161 37 chr15 11608300 11608461 -74087293 + MER5A DNA MER1_type 1 181 -8 2923 141 50 23 chr15 11608692 11609169 -74086585 + LTR2B LTR ERV1 1 490 0 273 29 0 0 chr15 11609336 11609370 -74086384 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 312 48 0 0 chr15 11609695 11609737 -74086017 + (GA)n Simple_repeat Simple_repeat 1 42 0 533 280 74 45 chr15 11610218 11610569 -74085185 + L1ME LINE L1 921 1322 -5074 2032 135 7 0 chr15 11610569 11610858 -74084896 + AluSx SINE Alu 1 291 -21 533 280 74 45 chr15 11610858 11611024 -74084730 + L1ME LINE L1 1322 1482 -4914 1176 249 93 19 chr15 11611100 11611756 -74083998 + L1ME LINE L1 1935 2599 -3616 1668 269 98 55 chr15 11611835 11612955 -74082799 + L1ME LINE L1 2705 3872 -2343 1987 273 98 7 chr15 11613025 11613882 -74081872 + L1ME LINE L1 4602 5544 -689 216 0 0 0 chr15 11614022 11614046 -74081708 + (A)n Simple_repeat Simple_repeat 1 24 0 312 354 57 21 chr15 11615858 11616050 -74079704 - L2 LINE L2 -208 3064 2866 203 312 54 0 chr15 11616350 11616443 -74079311 + L2 LINE L2 1254 1351 -1963 1175 177 0 58 chr15 11616558 11616784 -74078970 - AluJb SINE Alu -14 298 86 529 191 118 0 chr15 11616900 11617010 -74078744 + MER63 DNA MER1_type 1 749 -87 348 296 178 20 chr15 11617440 11617592 -74078162 - MER5A DNA MER1_type 0 189 14 502 259 117 44 chr15 11618105 11618310 -74077444 + MIR SINE MIR 17 236 -26 1965 133 3 7 chr15 11618339 11618639 -74077115 + AluSx SINE Alu 1 299 -13 396 277 30 0 chr15 11618639 11618740 -74077014 + MIR SINE MIR 100 203 -59 288 325 119 86 chr15 11618960 11619260 -74076494 + L2 LINE L2 2831 3151 -121 723 207 75 17 chr15 11619260 11619434 -74076320 + MER5A DNA MER1_type 5 188 -1 288 325 119 86 chr15 11619434 11619561 -74076193 + L2 LINE L2 3151 3272 0 224 379 11 11 chr15 11619702 11619797 -74075957 - L2 LINE L2 -494 2820 2726 466 167 0 0 chr15 11621281 11621359 -74074395 + MER89 LTR ERV1 1 78 -481 * 2137 154 36 3 chr15 11621353 11621716 -74074038 + MER89 LTR ERV1 183 557 -2 294 57 0 0 chr15 11622641 11622676 -74073078 + U2 snRNA snRNA 1 35 -153 855 198 6 6 chr15 11622689 11622846 -74072908 + FRAM SINE Alu 1 157 -19 1504 61 0 0 chr15 11623162 11623343 -74072411 + L1PA8 LINE L1 5990 6170 -2 23 0 0 0 chr15 11623622 11623645 -74072109 + AT_rich Low_complexity Low_complexity 1 23 0 246 219 0 0 chr15 11624073 11624137 -74071617 + CT-rich Low_complexity Low_complexity 1 64 0 342 0 0 0 chr15 11624148 11624186 -74071568 + (CAT)n Simple_repeat Simple_repeat 1 38 0 328 261 45 40 chr15 11625027 11625203 -74070551 + L1MEd LINE L1 23 199 -5920 2792 203 54 76 chr15 11625311 11625545 -74070209 - L1ME2 LINE L1 -32 6132 5894 754 177 0 16 chr15 11625545 11625669 -74070085 + FLAM_C SINE Alu 2 123 -10 2792 203 54 76 chr15 11625669 11626335 -74069419 - L1ME2 LINE L1 -270 5894 5279 1716 151 21 7 chr15 11626335 11626620 -74069134 - AluJo SINE Alu -23 289 1 2792 203 54 76 chr15 11626620 11627272 -74068482 - L1ME2 LINE L1 -885 5279 4614 819 167 0 0 chr15 11627283 11627403 -74068351 + FLAM_C SINE Alu 5 124 -19 2786 229 40 24 chr15 11627437 11628242 -74067512 - L1ME2 LINE L1 -1540 4606 3789 2524 62 0 3 chr15 11628355 11628659 -74067095 + AluY SINE Alu 1 303 -8 1888 219 14 8 chr15 11628839 11629200 -74066554 - MLT1A1 LTR MaLR 0 365 3 6741 225 42 4 chr15 11629387 11631944 -74063810 + L1P LINE L1 2452 5120 -1026 21 0 0 0 chr15 11632050 11632071 -74063683 + AT_rich Low_complexity Low_complexity 1 21 0 2250 109 20 0 chr15 11632124 11632428 -74063326 + AluSx SINE Alu 1 310 -2 208 254 0 36 chr15 11632838 11632893 -74062861 - L3 LINE CR1 -5 1572 1520 519 309 72 45 chr15 11633869 11634092 -74061662 + MIR SINE MIR 23 251 -11 769 182 0 16 chr15 11634119 11634428 -74061326 + (CACCAT)n Simple_repeat Simple_repeat 1 304 0 497 309 99 0 chr15 11634925 11635106 -74060648 - MIR SINE MIR 0 262 64 214 267 186 23 chr15 11635232 11635404 -74060350 - L2 LINE L2 -213 3059 2860 806 145 145 27 chr15 11635931 11636117 -74059637 - MER3 DNA MER1_type 0 209 2 383 307 26 0 chr15 11636433 11636586 -74059168 + L2 LINE L2 2867 3023 -290 28 48 0 0 chr15 11637790 11637832 -74057922 + AT_rich Low_complexity Low_complexity 1 42 0 286 261 176 18 chr15 11638058 11638179 -74057575 + MIR SINE MIR 8 147 -107 290 259 37 15 chr15 11638843 11638978 -74056776 + L1MDb LINE L1 1145 1282 -5127 591 291 64 33 chr15 11639004 11639046 -74056708 + L1MDb LINE L1 1591 1630 -4957 2077 128 10 10 chr15 11639046 11639351 -74056403 + AluSx SINE Alu 1 305 -7 591 291 64 33 chr15 11639351 11639700 -74056054 + L1MDb LINE L1 1630 1994 -4593 2246 79 14 3 chr15 11639765 11640057 -74055697 + AluSq SINE Alu 1 295 -18 884 256 103 18 chr15 11640147 11640729 -74055025 + L1MDb LINE L1 2189 2796 -3610 1466 203 98 33 chr15 11640735 11641134 -74054620 + LTR40c LTR ERVL 36 460 -5 945 228 55 44 chr15 11641139 11641503 -74054251 + L1MDb LINE L1 2481 2848 -3558 243 210 64 115 chr15 11641518 11641675 -74054079 + L1MDb LINE L1 2821 2969 -3437 1604 174 15 8 chr15 11641756 11642021 -74053733 - AluJb SINE Alu -45 267 1 2474 87 0 0 chr15 11642085 11642395 -74053359 - AluSx SINE Alu -2 310 1 241 111 111 0 chr15 11642418 11642463 -74053291 - L1MB5 LINE L1 -9 6165 6116 * 501 182 8 33 chr15 11642449 11642570 -74053184 - L1MB5 LINE L1 -9 6165 6048 464 188 50 0 chr15 11642585 11642686 -74053068 + L1MDb LINE L1 3148 3253 -3153 732 250 32 86 chr15 11642740 11642962 -74052792 + L1MDb LINE L1 3653 3885 -2521 207 0 0 0 chr15 11642962 11642985 -74052769 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2110 125 0 0 chr15 11642995 11643282 -74052472 + AluJb SINE Alu 21 307 -5 732 250 32 86 chr15 11643282 11643456 -74052298 + L1MDb LINE L1 3894 4038 -2368 22 35 0 0 chr15 11643474 11643503 -74052251 + AT_rich Low_complexity Low_complexity 1 29 0 1807 303 32 23 chr15 11643546 11644325 -74051429 + L1MC4a LINE L1 286 1071 -5516 992 216 13 74 chr15 11644323 11644378 -74051376 + L1MC4a LINE L1 4099 4156 -2250 * 1067 71 71 0 chr15 11644378 11644533 -74051221 + L1PA8 LINE L1 6007 6172 0 992 216 13 74 chr15 11644533 11644787 -74050967 + L1MC4a LINE L1 4156 4389 -2017 217 337 174 0 chr15 11646705 11646791 -74048963 + MIR SINE MIR 52 152 -56 195 100 0 0 chr15 11647093 11647123 -74048631 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 2126 91 14 3 chr15 11647992 11648288 -74047466 - AluSq SINE Alu -14 299 1 780 183 12 6 chr15 11648404 11648568 -74047186 + MER103 DNA DNA 1 165 -1 240 216 21 0 chr15 11649621 11649679 -74046075 - MIR SINE MIR -61 147 87 189 107 0 0 chr15 11649973 11650001 -74045753 + (A)n Simple_repeat Simple_repeat 1 28 0 186 219 244 12 chr15 11650271 11650353 -74045401 + MIR SINE MIR 45 145 -63 491 276 147 37 chr15 11651493 11651656 -74044098 - MER5A DNA MER1_type 0 189 9 291 336 67 34 chr15 11651929 11652078 -74043676 + MER5A DNA MER1_type 29 182 -7 2033 140 3 3 chr15 11653284 11653591 -74042163 + AluSx SINE Alu 1 307 -5 221 95 0 24 chr15 11653777 11653819 -74041935 + (ATTG)n Simple_repeat Simple_repeat 4 44 0 2258 93 0 0 chr15 11653819 11654099 -74041655 - AluSx SINE Alu -32 280 1 222 91 0 0 chr15 11654136 11654169 -74041585 + (A)n Simple_repeat Simple_repeat 1 33 0 3283 211 51 12 chr15 11654171 11655377 -74040377 + L1MC4a LINE L1 4667 5916 -510 976 233 0 58 chr15 11655392 11655705 -74040049 + L1ME1 LINE L1 5870 6164 -2 376 274 10 10 chr15 11656600 11656702 -74039052 - MER5A DNA MER1_type -6 183 82 197 300 0 17 chr15 11657387 11657447 -74038307 + MER5B DNA MER1_type 24 82 -96 447 234 109 30 chr15 11657755 11657956 -74037798 + L1MC4a LINE L1 6115 6331 -1737 674 231 63 89 chr15 11658097 11658366 -74037388 + MIR SINE MIR 1 262 0 1019 108 0 0 chr15 11658379 11658509 -74037245 - AluJo SINE Alu -178 134 5 253 175 0 0 chr15 11659341 11659381 -74036373 + Tigger4(Zombi) DNA MER2_type 1 40 -2691 197 266 62 62 chr15 11659411 11659475 -74036279 + L2 LINE L2 3227 3290 -23 22 0 0 0 chr15 11660389 11660411 -74035343 + AT_rich Low_complexity Low_complexity 1 22 0 344 360 32 8 chr15 11660708 11660833 -74034921 + L2 LINE L2 3143 3270 -2 3250 148 36 8 chr15 11661284 11661894 -74033860 + L1MB8 LINE L1 5552 6178 0 295 230 56 56 chr15 11663635 11663761 -74031993 + L2 LINE L2 3124 3249 -64 1623 187 0 0 chr15 11663903 11664176 -74031578 + AluJb SINE Alu 40 312 0 403 213 118 8 chr15 11664332 11664348 -74031406 - L1MA10 LINE L1 -2 6332 6317 3181 205 70 38 chr15 11664348 11665220 -74030534 - L1ME2 LINE L1 -9 6155 5256 383 154 88 33 chr15 11665319 11665410 -74030344 + MLT1L LTR MaLR 465 560 -55 26 0 0 0 chr15 11666147 11666173 -74029581 + AT_rich Low_complexity Low_complexity 1 26 0 1938 172 3 0 chr15 11667040 11667342 -74028412 + AluJb SINE Alu 1 303 -9 22 0 0 0 chr15 11667765 11667787 -74027967 + AT_rich Low_complexity Low_complexity 1 22 0 384 288 59 70 chr15 11667960 11668318 -74027436 - MARNA DNA Mariner -19 567 214 775 263 166 30 chr15 11668667 11669172 -74026582 - L1ME4a LINE L1 -65 6056 5483 22 35 0 0 chr15 11670178 11670207 -74025547 + AT_rich Low_complexity Low_complexity 1 29 0 522 299 181 45 chr15 11672268 11672770 -74022984 + L2 LINE L2 2480 3060 -212 320 277 47 98 chr15 11673775 11673923 -74021831 + MIR SINE MIR 2 131 -131 2134 129 0 3 chr15 11673923 11674226 -74021528 + AluSx SINE Alu 6 307 -5 320 277 47 98 chr15 11674226 11674351 -74021403 + MIR SINE MIR 131 261 -1 2247 102 10 0 chr15 11674564 11674857 -74020897 + AluSx SINE Alu 1 296 -16 451 219 67 55 chr15 11675341 11675505 -74020249 + LTR45B LTR ERV1 324 489 0 439 244 120 81 chr15 11675514 11675772 -74019982 + HAL1 LINE L1 358 625 -1882 1360 236 62 5 chr15 11675804 11676189 -74019565 + HAL1 LINE L1 1388 1794 -713 815 289 53 3 chr15 11676220 11676538 -74019216 + HAL1 LINE L1 1881 2214 -293 2263 126 0 0 chr15 11677611 11677921 -74017833 - AluSx SINE Alu -2 310 1 23 33 0 0 chr15 11677970 11678000 -74017754 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr15 11678279 11678300 -74017454 + AT_rich Low_complexity Low_complexity 1 21 0 488 307 80 0 chr15 11678834 11678997 -74016757 - LTR33A LTR ERVL -125 398 223 23 0 0 0 chr15 11679181 11679204 -74016550 + AT_rich Low_complexity Low_complexity 1 23 0 205 238 0 129 chr15 11679373 11679474 -74016280 - L2 LINE L2 -16 3297 3210 837 284 37 26 chr15 11679614 11679885 -74015869 - ERVL LTR ERVL -618 5146 4873 2406 93 3 0 chr15 11679940 11680251 -74015503 + AluSx SINE Alu 1 312 0 339 313 107 33 chr15 11681189 11681339 -74014415 + MER5A DNA MER1_type 1 161 -28 2315 81 0 7 chr15 11682661 11682958 -74012796 + AluY SINE Alu 5 299 -12 246 267 50 0 chr15 11682958 11683018 -74012736 + MER5C DNA MER1_type 5 67 -257 228 271 82 59 chr15 11683333 11683418 -74012336 - MIR SINE MIR -127 135 49 2181 106 0 0 chr15 11683831 11684139 -74011615 + AluSx SINE Alu 1 308 0 2067 102 20 10 chr15 11684232 11684527 -74011227 + AluSq SINE Alu 1 298 -15 923 92 0 0 chr15 11685492 11685612 -74010142 - AluSc SINE Alu -17 292 173 2044 149 8 37 chr15 11688413 11688789 -74006965 - MER47A DNA MER2_type 0 366 2 1293 202 40 53 chr15 11688898 11689333 -74006421 - LTR10B LTR ERV1 0 547 76 414 0 0 0 chr15 11689423 11689469 -74006285 + (CA)n Simple_repeat Simple_repeat 1 46 0 3223 228 52 36 chr15 11689664 11690698 -74005056 + L1MDa LINE L1 1320 2336 -4204 1968 131 26 10 chr15 11690698 11691003 -74004751 + AluSx SINE Alu 1 310 -2 306 0 0 0 chr15 11691003 11691037 -74004717 + (TA)n Simple_repeat Simple_repeat 2 35 0 3223 228 52 36 chr15 11691037 11691924 -74003830 + L1MDa LINE L1 2335 3277 -3263 701 196 21 93 chr15 11691924 11692062 -74003692 - MER58B DNA MER1_type -2079 341 219 632 117 45 0 chr15 11692062 11692173 -74003581 + L1MA6 LINE L1 6185 6300 0 701 196 21 93 chr15 11692173 11692228 -74003526 - MER58B DNA MER1_type -2201 219 162 2147 109 0 3 chr15 11692381 11692693 -74003061 + AluSq SINE Alu 1 311 0 2216 59 4 0 chr15 11694419 11694690 -74001064 + AluY SINE Alu 1 272 -39 2315 55 3 29 chr15 11694701 11695012 -74000742 + AluY SINE Alu 1 303 -8 28 38 0 19 chr15 11695178 11695206 -74000548 + AT_rich Low_complexity Low_complexity 1 29 -23 1656 171 29 7 chr15 11695206 11695486 -74000268 - AluJo SINE Alu -26 286 1 28 38 0 19 chr15 11695486 11695510 -74000244 + AT_rich Low_complexity Low_complexity 29 52 0 1638 201 3 3 chr15 11695709 11696008 -73999746 - AluJo SINE Alu -13 299 1 199 363 128 20 chr15 11698395 11698497 -73997257 + L2 LINE L2 3160 3272 0 1221 286 154 31 chr15 11698614 11699400 -73996354 - L2 LINE L2 -1 3312 2420 243 345 78 9 chr15 11700593 11700709 -73995045 + L2 LINE L2 3186 3309 -4 271 294 123 59 chr15 11701268 11701472 -73994282 - MER20 DNA MER1_type 0 219 3 1585 121 13 0 chr15 11701644 11701868 -73993886 + AluSg/x SINE Alu 75 301 -11 1589 155 34 11 chr15 11701912 11702177 -73993577 + AluSx SINE Alu 3 273 -39 2153 75 50 4 chr15 11703985 11704264 -73991490 + AluSg1 SINE Alu 1 292 -17 5279 154 59 20 chr15 11706491 11708078 -73987676 - L1MA9 LINE L1 -3 6309 4663 496 245 7 27 chr15 11708075 11708222 -73987532 - L1M4c LINE L1 -4605 1779 1636 * 733 233 48 24 chr15 11708837 11709047 -73986707 - L1MB8 LINE L1 -1 6177 5963 28 0 0 0 chr15 11709382 11709410 -73986344 + AT_rich Low_complexity Low_complexity 1 28 0 2103 86 57 4 chr15 11711025 11711305 -73984449 - AluSg SINE Alu -15 295 1 2336 83 3 3 chr15 11711479 11711779 -73983975 + AluSq SINE Alu 1 300 -13 795 202 72 69 chr15 11712378 11712724 -73983030 + L1MC5 LINE L1 7147 7493 -468 487 265 105 7 chr15 11713076 11713404 -73982350 - MARNA DNA Mariner -43 543 166 1846 159 3 3 chr15 11713516 11713818 -73981936 + AluJo SINE Alu 1 302 -10 3830 123 5 41 chr15 11714358 11715015 -73980739 - MER41B LTR ERV1 -2 633 1 686 164 15 8 chr15 11715693 11715827 -73979927 - LTR37A LTR ERV1 -2 424 290 269 172 53 189 chr15 11715841 11716010 -73979744 - LTR37A LTR ERV1 -242 184 39 329 292 161 12 chr15 11716137 11716298 -73979456 - MIR SINE MIR -5 257 73 302 305 79 35 chr15 11716447 11716650 -73979104 + MIR SINE MIR 5 216 -46 189 0 0 0 chr15 11716765 11716786 -73978968 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 4914 36 2 2 chr15 11717433 11718023 -73977731 + L1PA5 LINE L1 5565 6154 0 311 233 128 0 chr15 11718755 11718841 -73976913 - MIR SINE MIR -78 184 88 246 284 216 0 chr15 11718992 11719108 -73976646 + MIR3 SINE MIR 67 207 -1 525 183 0 124 chr15 11719198 11719351 -73976403 + MIR SINE MIR 119 252 -10 183 80 0 0 chr15 11719356 11719381 -73976373 + (CAT)n Simple_repeat Simple_repeat 2 26 0 2540 51 0 22 chr15 11719459 11719774 -73975980 + AluY SINE Alu 1 308 -3 569 315 20 30 chr15 11720147 11720347 -73975407 + MIR3 SINE MIR 2 199 -9 1104 220 9 5 chr15 11721842 11722060 -73973694 + MER58A DNA MER1_type 5 223 -1 640 214 0 15 chr15 11722078 11722209 -73973545 + FLAM_A SINE Alu 1 129 -4 476 290 48 5 chr15 11722211 11722397 -73973357 - L1MC/D LINE L1 -2001 5807 5614 233 268 37 12 chr15 11723075 11723157 -73972597 - L2 LINE L2 -18 3254 3171 2684 198 6 8 chr15 11723247 11723763 -73971991 + MER119 DNA MER1_type 69 583 0 547 249 77 22 chr15 11723779 11723960 -73971794 + MIR SINE MIR 70 260 -2 619 129 35 190 chr15 11724776 11725008 -73970746 + MER20 DNA MER1_type 22 217 -2 708 239 11 17 chr15 11725165 11725341 -73970413 + MER5B DNA MER1_type 1 175 -3 2196 67 0 0 chr15 11725502 11725770 -73969984 - AluY SINE Alu -9 302 35 3480 130 24 49 chr15 11726511 11727127 -73968627 + LTR26 LTR ERV1 3 603 0 30 45 0 0 chr15 11727621 11727665 -73968089 + AT_rich Low_complexity Low_complexity 1 44 0 2215 125 0 0 chr15 11727674 11727971 -73967783 + AluSx SINE Alu 1 297 -15 30 59 0 0 chr15 11728030 11728081 -73967673 + AT_rich Low_complexity Low_complexity 1 51 0 1959 134 37 3 chr15 11729240 11729390 -73966364 + AluJo SINE Alu 1 145 -167 234 0 0 0 chr15 11729390 11729416 -73966338 + (TG)n Simple_repeat Simple_repeat 2 27 0 1959 134 37 3 chr15 11729416 11729563 -73966191 + AluJo SINE Alu 145 308 -4 669 223 81 68 chr15 11729658 11729714 -73966040 + LTR37A LTR ERV1 112 166 -260 1885 162 0 7 chr15 11729714 11730010 -73965744 + AluJb SINE Alu 1 294 -18 669 223 81 68 chr15 11730010 11730263 -73965491 + LTR37A LTR ERV1 166 425 -1 1374 152 5 5 chr15 11730270 11730481 -73965273 + AluJo SINE Alu 24 234 -78 224 200 15 0 chr15 11730758 11730823 -73964931 + CT-rich Low_complexity Low_complexity 3 68 0 24 32 0 0 chr15 11731464 11731495 -73964259 + AT_rich Low_complexity Low_complexity 1 31 0 351 255 40 107 chr15 11732176 11732325 -73963429 - L2 LINE L2 -1 3271 3133 21 0 0 0 chr15 11732336 11732357 -73963397 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr15 11732979 11733022 -73962732 + AT_rich Low_complexity Low_complexity 1 43 0 225 0 0 0 chr15 11734088 11734113 -73961641 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 25 31 0 0 chr15 11735338 11735370 -73960384 + AT_rich Low_complexity Low_complexity 1 32 0 229 217 14 0 chr15 11735466 11735535 -73960219 + (TA)n Simple_repeat Simple_repeat 2 71 0 41 58 0 0 chr15 11735735 11735804 -73959950 + AT_rich Low_complexity Low_complexity 1 69 0 437 258 74 74 chr15 11736407 11736636 -73959118 + MIR SINE MIR 26 254 -8 2462 100 0 0 chr15 11736816 11737126 -73958628 + AluSx SINE Alu 3 312 0 1925 136 4 4 chr15 11737473 11737752 -73958002 + AluSx SINE Alu 1 279 -33 221 73 0 24 chr15 11737754 11737795 -73957959 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2354 60 0 0 chr15 11738534 11738847 -73956907 + AluY SINE Alu 1 313 0 501 132 44 26 chr15 11738859 11738973 -73956781 + Charlie1 DNA MER1_type 1566 1681 -1080 798 184 8 90 chr15 11738978 11739013 -73956741 + Charlie1 DNA MER1_type 1783 1819 -942 2375 87 7 0 chr15 11739013 11739311 -73956443 + AluSg SINE Alu 1 300 -10 798 184 8 90 chr15 11739311 11739520 -73956234 + Charlie1 DNA MER1_type 1819 2007 -754 2954 202 57 35 chr15 11739524 11739667 -73956087 - L1ME1 LINE L1 -122 6044 5906 2037 142 3 3 chr15 11739667 11739969 -73955785 - AluJb SINE Alu -10 302 1 2954 202 57 35 chr15 11739969 11740407 -73955347 - L1ME1 LINE L1 -260 5906 5479 1260 182 190 8 chr15 11740407 11740665 -73955089 - AluSx SINE Alu -7 305 1 2954 202 57 35 chr15 11740665 11740848 -73954906 - L1ME1 LINE L1 -687 5479 5302 1733 154 49 6 chr15 11740848 11741172 -73954582 + MER44D DNA MER2_type 2 609 0 2954 202 57 35 chr15 11741172 11741897 -73953857 - L1ME1 LINE L1 -864 5302 4519 1651 162 99 48 chr15 11741953 11742293 -73953461 + Charlie1 DNA MER1_type 2231 2603 -158 2361 88 3 0 chr15 11742293 11742588 -73953166 - AluSx SINE Alu -16 296 1 1651 162 99 48 chr15 11742588 11742722 -73953032 + Charlie1 DNA MER1_type 2603 2729 -32 390 239 173 38 chr15 11743053 11743342 -73952412 + L1ME LINE L1 5319 5646 -475 2209 92 27 0 chr15 11743416 11743708 -73952046 + AluSx SINE Alu 1 300 -12 2197 48 44 0 chr15 11743744 11744053 -73951701 + AluY SINE Alu 1 321 0 555 237 158 26 chr15 11744236 11744464 -73951290 + MIR SINE MIR 5 262 0 25 99 0 0 chr15 11745011 11745092 -73950662 + AT_rich Low_complexity Low_complexity 1 81 0 6251 76 9 0 chr15 11746090 11747496 -73948258 - L1PA8A LINE L1 -13 6118 4704 2645 41 0 13 chr15 11748678 11748993 -73946761 - AluY SINE Alu 0 311 1 23 33 0 0 chr15 11749196 11749226 -73946528 + AT_rich Low_complexity Low_complexity 1 30 0 1897 129 6 28 chr15 11749384 11749701 -73946053 + AluSx SINE Alu 2 311 -1 1973 140 23 3 chr15 11750535 11750835 -73944919 + AluSx SINE Alu 1 306 -6 310 241 205 36 chr15 11751034 11751146 -73944608 - MIR3 SINE MIR -48 160 30 22 56 0 0 chr15 11751317 11751353 -73944401 + AT_rich Low_complexity Low_complexity 1 36 0 1854 139 0 46 chr15 11751687 11752042 -73943712 + AluJb SINE Alu 1 340 0 183 42 0 0 chr15 11752066 11752090 -73943664 + (TATTG)n Simple_repeat Simple_repeat 2 25 0 26 82 0 0 chr15 11752090 11752151 -73943603 + AT_rich Low_complexity Low_complexity 1 61 0 206 147 88 0 chr15 11752168 11752236 -73943518 + (TA)n Simple_repeat Simple_repeat 2 75 0 422 274 89 19 chr15 11753497 11753654 -73942100 - MIR3 SINE MIR -1 207 40 2320 104 0 0 chr15 11754291 11754589 -73941165 + AluSx SINE Alu 1 298 -14 2187 94 42 0 chr15 11754893 11755180 -73940574 - AluY SINE Alu -10 301 3 52 36 0 12 chr15 11755441 11755460 -73940294 + AT_rich Low_complexity Low_complexity 1 19 -64 2264 103 0 0 chr15 11755460 11755751 -73940003 + AluSx SINE Alu 1 291 -21 52 36 0 12 chr15 11755751 11755815 -73939939 + AT_rich Low_complexity Low_complexity 19 83 0 224 323 21 10 chr15 11755975 11756071 -73939683 + L2 LINE L2 3176 3272 0 2184 121 3 0 chr15 11756110 11756415 -73939339 + AluSx SINE Alu 1 306 -6 2177 123 0 0 chr15 11756917 11757225 -73938529 - AluSg SINE Alu -2 308 1 525 274 172 28 chr15 11757625 11757840 -73937914 - MIR SINE MIR -8 254 9 2230 94 7 7 chr15 11758106 11758404 -73937350 + AluSp SINE Alu 1 298 -15 2814 197 34 13 chr15 11760103 11760718 -73935036 - MER82 DNA MER2_type -3 650 23 359 0 43 0 chr15 11761303 11761349 -73934405 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 458 295 66 72 chr15 11762996 11763345 -73932409 + L2 LINE L2 2212 2558 -756 191 283 19 0 chr15 11763363 11763416 -73932338 + L2 LINE L2 2686 2739 -575 2231 115 0 3 chr15 11763847 11764151 -73931603 + AluSq SINE Alu 1 303 -10 6292 61 53 31 chr15 11764504 11765685 -73930069 + SVA Other Other 430 1440 0 1736 189 10 0 chr15 11765744 11766041 -73929713 - AluJo SINE Alu -12 300 1 1948 103 58 34 chr15 11766625 11766917 -73928837 + AluSx SINE Alu 1 299 -13 1940 104 7 15 chr15 11767096 11767366 -73928388 - AluSp SINE Alu -13 300 33 2478 97 0 0 chr15 11767486 11767795 -73927959 - AluSc SINE Alu 0 309 1 640 320 24 29 chr15 11767795 11768286 -73927468 - L1MEd LINE L1 -5042 1077 589 207 226 75 0 chr15 11768383 11768436 -73927318 - MIR SINE MIR -128 134 78 2386 77 10 0 chr15 11768799 11769096 -73926658 + AluSc SINE Alu 1 300 -9 310 276 164 0 chr15 11769291 11769407 -73926347 + MIR SINE MIR 110 244 -18 490 280 192 10 chr15 11769568 11769761 -73925993 + MIR SINE MIR 3 230 -32 194 356 26 26 chr15 11771246 11771314 -73924440 + MIR SINE MIR 29 99 -163 2045 146 0 7 chr15 11771314 11771623 -73924131 - AluSx SINE Alu -4 308 2 194 356 26 26 chr15 11771623 11771669 -73924085 + MIR SINE MIR 98 143 -119 2008 163 3 3 chr15 11771719 11772014 -73923740 - AluJb SINE Alu -17 295 1 1980 137 7 3 chr15 11772249 11772549 -73923205 + AluSx SINE Alu 1 301 -11 287 256 39 0 chr15 11772629 11772707 -73923047 - MIR SINE MIR -7 255 175 2277 94 3 3 chr15 11773034 11773333 -73922421 + AluSq SINE Alu 2 300 -13 322 123 0 55 chr15 11773334 11773407 -73922347 + L1ME3A LINE L1 5882 5950 -220 2245 97 0 7 chr15 11773776 11774076 -73921678 + AluSq SINE Alu 1 298 -15 180 0 0 0 chr15 11774104 11774124 -73921630 + (A)n Simple_repeat Simple_repeat 1 20 0 756 199 52 62 chr15 11774124 11774335 -73921419 + MIR SINE MIR 36 244 -18 1613 89 5 0 chr15 11774565 11774768 -73920986 - AluSg/x SINE Alu -13 297 94 2287 82 20 0 chr15 11774831 11775155 -73920599 + AluSp SINE Alu 1 330 0 190 0 0 0 chr15 11775134 11775235 -73920519 + (TAA)n Simple_repeat Simple_repeat 1 101 0 2428 54 7 0 chr15 11775334 11775629 -73920125 + AluY SINE Alu 1 297 -14 1577 185 7 11 chr15 11775639 11775920 -73919834 + AluJb SINE Alu 1 280 -32 227 325 175 0 chr15 11776251 11776377 -73919377 + L2 LINE L2 3016 3163 -150 213 151 0 0 chr15 11776379 11776432 -73919322 + (TA)n Simple_repeat Simple_repeat 2 54 0 401 356 7 22 chr15 11776432 11776567 -73919187 + L2 LINE L2 3117 3249 -23 1749 184 0 16 chr15 11776570 11776874 -73918880 - AluJb SINE Alu -13 299 1 562 343 93 8 chr15 11776874 11777265 -73918489 + L2 LINE L2 2250 2674 -640 855 146 15 0 chr15 11777266 11777396 -73918358 + AluSq/x SINE Alu 2 133 -179 2405 81 0 13 chr15 11778736 11779044 -73916710 + AluSc SINE Alu 1 304 -5 519 324 36 9 chr15 11779091 11779313 -73916441 + MIR SINE MIR 20 247 -15 1825 172 7 3 chr15 11779431 11779728 -73916026 - AluJb SINE Alu -14 298 1 2276 112 0 3 chr15 11779893 11780198 -73915556 + AluSx SINE Alu 1 304 -8 1425 215 11 18 chr15 11780401 11780685 -73915069 - AluJo SINE Alu -30 282 1 266 297 0 43 chr15 11780920 11781058 -73914696 + L1ME4a LINE L1 5648 5779 -342 2450 70 3 0 chr15 11781068 11781368 -73914386 - AluY SINE Alu -10 301 1 320 223 146 8 chr15 11781385 11781515 -73914239 + L1ME4a LINE L1 5970 6117 -4 22 0 0 0 chr15 11781542 11781564 -73914190 + AT_rich Low_complexity Low_complexity 1 22 0 259 333 26 0 chr15 11782009 11782087 -73913667 - MIR SINE MIR -75 133 54 211 220 40 0 chr15 11782416 11782466 -73913288 + L2 LINE L2 3221 3272 0 2261 114 0 0 chr15 11782795 11783094 -73912660 + AluSx SINE Alu 1 299 -13 278 298 105 32 chr15 11783978 11784102 -73911652 + L2 LINE L2 3140 3272 0 2404 71 6 56 chr15 11784276 11784600 -73911154 - AluSp SINE Alu -5 308 1 474 276 234 4 chr15 11784616 11784855 -73910899 + L2 LINE L2 2917 3210 -103 2401 85 3 0 chr15 11785214 11785519 -73910235 - AluSp SINE Alu -7 306 1 395 206 169 0 chr15 11785528 11785645 -73910109 + FLAM_A SINE Alu 21 131 -2 2570 33 0 20 chr15 11785662 11785964 -73909790 - AluY SINE Alu -15 296 1 229 362 157 15 chr15 11785976 11786244 -73909510 - L2 LINE L2 -575 2739 2434 388 208 104 0 chr15 11786706 11786812 -73908942 + L2 LINE L2 3136 3252 -20 185 0 40 0 chr15 11787446 11787471 -73908283 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2087 101 0 4 chr15 11787523 11787800 -73907954 - AluSp SINE Alu -17 296 21 1987 119 26 0 chr15 11787842 11788145 -73907609 + AluSx SINE Alu 1 311 -1 3088 207 54 58 chr15 11788145 11788673 -73907081 - L1ME1 LINE L1 -17 6149 5621 2133 111 0 4 chr15 11788673 11788977 -73906777 - AluSg SINE Alu 0 304 2 3088 207 54 58 chr15 11788977 11789097 -73906657 - L1ME1 LINE L1 -545 5621 5502 1468 97 29 0 chr15 11789097 11789304 -73906450 - L1PA12 LINE L1 0 6168 5956 3088 207 54 58 chr15 11789304 11789331 -73906423 - L1ME1 LINE L1 -664 5502 5476 2295 77 0 14 chr15 11789331 11789645 -73906109 - AluSx SINE Alu 0 310 1 3088 207 54 58 chr15 11789645 11789833 -73905921 - L1ME1 LINE L1 -690 5476 5285 2148 108 23 10 chr15 11790065 11790372 -73905382 + AluY SINE Alu 1 311 0 2350 80 0 3 chr15 11790384 11790711 -73905043 + AluSq SINE Alu 1 326 0 2334 107 0 0 chr15 11791564 11791863 -73903891 + AluSx SINE Alu 1 299 -13 219 342 25 0 chr15 11792138 11792258 -73903496 - L2 LINE L2 -1300 2014 1892 250 267 61 79 chr15 11792593 11792758 -73902996 - MLT1K LTR MaLR -348 240 79 21 0 0 0 chr15 11843826 11843847 -73851907 + AT_rich Low_complexity Low_complexity 1 21 0 315 289 41 8 chr15 11843984 11844105 -73851649 + MIR SINE MIR 77 201 -61 197 280 0 0 chr15 11844803 11844853 -73850901 + L2 LINE L2 3264 3313 0 192 179 0 0 chr15 11845826 11845865 -73849889 + (TTGGGG)n Simple_repeat Simple_repeat 3 41 0 203 244 0 0 chr15 11845964 11846009 -73849745 - L2 LINE L2 -1 3312 3268 212 313 25 0 chr15 11846092 11846172 -73849582 - L2 LINE L2 -234 3038 2957 1835 117 4 8 chr15 11846977 11847243 -73848511 + AluSp SINE Alu 47 311 -2 1158 249 41 68 chr15 11847273 11847711 -73848043 + MER34 LTR ERV1 1 426 -116 2285 103 0 3 chr15 11847738 11848038 -73847716 - AluSg SINE Alu -11 299 1 1779 100 123 4 chr15 11848548 11848808 -73846946 - AluSx SINE Alu -21 291 1 801 172 0 0 chr15 11848850 11848978 -73846776 - FLAM_C SINE Alu -5 128 1 2254 109 0 0 chr15 11849010 11849304 -73846450 + AluSg SINE Alu 1 294 -16 2025 128 19 47 chr15 11849377 11849696 -73846058 + AluSx SINE Alu 1 310 -2 2303 91 3 38 chr15 11849705 11850025 -73845729 + AluSc SINE Alu 1 309 0 2382 64 0 0 chr15 11850026 11850309 -73845445 + AluY SINE Alu 1 283 -28 189 25 25 50 chr15 11850315 11850355 -73845399 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 456 62 0 0 chr15 11850584 11850648 -73845106 + (TC)n Simple_repeat Simple_repeat 1 64 0 224 278 163 0 chr15 11850842 11850993 -73844761 + MIR3 SINE MIR 28 202 -6 736 314 81 50 chr15 11851173 11851530 -73844224 + MER115 DNA AcHobo 1 368 -325 605 252 0 14 chr15 11852337 11852476 -73843278 + MIR3 SINE MIR 71 207 -1 1684 201 40 23 chr15 11852958 11853312 -73842442 - MLT1A1 LTR MaLR -2 363 4 2293 105 0 0 chr15 11853700 11853995 -73841759 + AluSg SINE Alu 1 295 -15 2228 102 0 0 chr15 11854006 11854290 -73841464 + AluSg SINE Alu 1 284 -26 2014 103 0 0 chr15 11854400 11854653 -73841101 - AluSc SINE Alu -56 253 1 208 280 0 0 chr15 11854820 11854870 -73840884 + L2 LINE L2 3220 3269 -3 2455 88 3 0 chr15 11855245 11855552 -73840202 - AluSp SINE Alu -5 308 1 36 23 0 0 chr15 11855795 11855838 -73839916 + AT_rich Low_complexity Low_complexity 1 43 0 2254 91 6 63 chr15 11855861 11856192 -73839562 - AluSx SINE Alu 0 312 1 296 258 126 44 chr15 11856397 11856579 -73839175 + MIR SINE MIR 66 262 0 1141 128 16 5 chr15 11856750 11856938 -73838816 - L1MB3 LINE L1 -3 6180 5991 2241 71 0 7 chr15 11857297 11857609 -73838145 - AluSg1 SINE Alu 0 310 1 273 224 67 22 chr15 11857625 11857759 -73837995 + L1ME4a LINE L1 5767 5906 -215 21 0 0 0 chr15 11857810 11857831 -73837923 + AT_rich Low_complexity Low_complexity 1 21 0 564 197 53 58 chr15 11857855 11858043 -73837711 + L1ME4a LINE L1 5935 6121 0 1468 67 0 6 chr15 11859174 11859353 -73836401 + AluSg SINE Alu 48 225 -85 811 116 9 0 chr15 11859453 11859565 -73836189 + AluSg/x SINE Alu 191 303 -9 213 261 0 0 chr15 11859565 11859611 -73836143 + MIR SINE MIR 207 252 -10 508 259 0 0 chr15 11859983 11860091 -73835663 + L2 LINE L2 3165 3272 0 24 0 0 0 chr15 11860462 11860486 -73835268 + AT_rich Low_complexity Low_complexity 1 24 0 203 292 0 0 chr15 11860843 11860891 -73834863 + T-rich Low_complexity Low_complexity 3 50 0 478 297 29 34 chr15 11861036 11861115 -73834639 - MIR SINE MIR -88 174 96 2352 81 0 3 chr15 11861115 11861412 -73834342 + AluSc SINE Alu 1 296 -13 478 297 29 34 chr15 11861412 11861507 -73834247 - MIR SINE MIR -166 96 1 273 244 84 42 chr15 11861720 11861839 -73833915 + MIR SINE MIR 89 212 -50 264 280 53 0 chr15 11862508 11862583 -73833171 - L2 LINE L2 -44 3269 3191 192 195 24 0 chr15 11862648 11862689 -73833065 + L2 LINE L2 3231 3272 0 2594 74 0 0 chr15 11862814 11863123 -73832631 - AluSg SINE Alu -1 309 1 226 283 19 0 chr15 11863128 11863181 -73832573 - L2 LINE L2 -16 3256 3203 2284 102 0 7 chr15 11863796 11864099 -73831655 - AluSg SINE Alu 0 310 10 23 0 0 0 chr15 11864215 11864238 -73831516 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr15 11865584 11865613 -73830141 + AT_rich Low_complexity Low_complexity 1 29 0 1211 83 6 0 chr15 11865618 11865774 -73829980 - AluSg/x SINE Alu -19 293 137 906 151 40 0 chr15 11865932 11866084 -73829670 - MER4B LTR ERV1 -452 158 1 882 243 94 72 chr15 11866090 11866486 -73829268 - L2 LINE L2 -10 3303 2881 2010 93 70 36 chr15 11866486 11866788 -73828966 + AluSx SINE Alu 1 312 0 882 243 94 72 chr15 11866788 11866970 -73828784 - L2 LINE L2 -432 2881 2705 209 0 98 0 chr15 11866977 11867018 -73828736 + (TA)n Simple_repeat Simple_repeat 1 45 0 1654 182 3 17 chr15 11867018 11867315 -73828439 - AluJo SINE Alu -19 293 1 1187 285 131 36 chr15 11867372 11867410 -73828344 + MLT2F LTR ERVL 5 38 -625 2369 65 0 0 chr15 11867410 11867728 -73828026 - AluSc SINE Alu 0 318 1 1187 285 131 36 chr15 11867728 11868236 -73827518 + MLT2F LTR ERVL 38 604 -59 455 96 12 0 chr15 11868237 11868320 -73827434 + (TA)n Simple_repeat Simple_repeat 1 84 0 224 248 47 8 chr15 11868343 11868472 -73827282 + (TA)n Simple_repeat Simple_repeat 2 135 0 1543 88 5 0 chr15 11868472 11868666 -73827088 - AluSx SINE Alu -117 195 1 250 94 94 19 chr15 11868817 11868870 -73826884 - MLT2B1 LTR ERVL 0 520 464 201 158 0 0 chr15 11868891 11868929 -73826825 + (TA)n Simple_repeat Simple_repeat 2 39 0 388 121 12 24 chr15 11868940 11868980 -73826774 + (GGAA)n Simple_repeat Simple_repeat 2 41 -42 2177 86 23 20 chr15 11868980 11869283 -73826471 + AluSp SINE Alu 1 304 -9 388 121 12 24 chr15 11869283 11869325 -73826429 + (GGAA)n Simple_repeat Simple_repeat 41 83 0 1865 229 6 57 chr15 11869326 11869815 -73825939 - MLT2B1 LTR ERVL -56 464 1 971 173 7 0 chr15 11869866 11870016 -73825738 + MER45A DNA AcHobo 26 176 -2 301 244 181 25 chr15 11870017 11870177 -73825577 - L2 LINE L2 -814 2500 2316 620 333 16 8 chr15 11870496 11870745 -73825009 + MLT1J LTR MaLR 11 261 -250 549 222 71 0 chr15 11870807 11870933 -73824821 + MLT1J LTR MaLR 375 509 -2 1794 90 0 43 chr15 11871742 11871997 -73823757 + AluSg SINE Alu 64 307 -3 477 143 12 12 chr15 11872010 11872094 -73823660 + AluSg/x SINE Alu 139 222 -88 235 393 36 0 chr15 11872214 11872326 -73823428 - L2 LINE L2 -252 3020 2905 387 274 9 18 chr15 11872444 11872557 -73823197 - LTR33 LTR ERVL 0 521 410 1894 136 27 13 chr15 11872564 11872865 -73822889 + AluSx SINE Alu 4 308 -4 226 386 79 0 chr15 11872913 11873040 -73822714 - LTR33 LTR ERVL -126 395 259 576 246 8 0 chr15 11873099 11873233 -73822521 - LTR33 LTR ERVL -374 147 13 675 291 38 8 chr15 11873250 11873487 -73822267 + MER46C DNA MER2_type 95 338 0 189 290 62 25 chr15 11873576 11873738 -73822016 - L2 LINE L2 -464 2850 2683 526 241 87 104 chr15 11874220 11874461 -73821293 + MER57B LTR ERV1 1 260 -166 257 91 0 109 chr15 11874490 11874529 -73821225 + MER57A LTR ERV1 349 382 -21 2099 120 3 20 chr15 11874529 11874828 -73820926 - AluSx SINE Alu -16 296 3 257 91 0 109 chr15 11874828 11874843 -73820911 + MER57A LTR ERV1 382 397 -6 2296 113 0 0 chr15 11875458 11875758 -73819996 - AluSx SINE Alu -12 300 1 2276 95 30 0 chr15 11875762 11876066 -73819688 - AluSp SINE Alu 0 313 1 2348 99 0 3 chr15 11876069 11876373 -73819381 - AluSg SINE Alu -7 303 1 36 0 0 0 chr15 11876376 11876412 -73819342 + AT_rich Low_complexity Low_complexity 1 36 0 223 250 55 23 chr15 11876466 11876594 -73819160 + (TA)n Simple_repeat Simple_repeat 2 133 0 700 250 64 0 chr15 11876629 11876785 -73818969 - FRAM SINE Alu 0 166 1 2522 75 0 0 chr15 11876929 11877236 -73818518 - AluY SINE Alu -4 307 1 783 231 72 56 chr15 11877730 11877981 -73817773 + MIR SINE MIR 3 257 -5 1987 146 6 16 chr15 11878222 11878537 -73817217 + AluSq SINE Alu 1 312 -1 2125 117 30 0 chr15 11878717 11879015 -73816739 + AluSq SINE Alu 1 307 -6 2018 128 35 0 chr15 11879057 11879347 -73816407 + AluSx SINE Alu 1 300 -12 2344 54 0 4 chr15 11879603 11879911 -73815843 + AluY SINE Alu 6 312 0 942 88 0 19 chr15 11880541 11880700 -73815054 + (TCC)n Simple_repeat Simple_repeat 1 156 0 183 80 0 0 chr15 11880723 11880748 -73815006 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 238 274 71 36 chr15 11880752 11880836 -73814918 - MIR SINE MIR -162 100 14 266 304 20 49 chr15 11880866 11880968 -73814786 - MER5A DNA MER1_type -25 164 66 2244 106 0 10 chr15 11881237 11881539 -73814215 + AluSg SINE Alu 6 304 -6 2429 59 0 29 chr15 11881826 11882132 -73813622 + AluY SINE Alu 1 297 -14 436 312 53 70 chr15 11882234 11882535 -73813219 + L2 LINE L2 2915 3210 -62 232 36 0 0 chr15 11883394 11883422 -73812332 + MER53 DNA DNA 1 28 -161 1714 68 5 0 chr15 11883459 11883664 -73812090 + AluSq SINE Alu 1 206 -107 1127 202 135 45 chr15 11883676 11884121 -73811633 - L1MC5 LINE L1 -308 7653 7169 2174 109 0 16 chr15 11884125 11884429 -73811325 - AluY SINE Alu -12 299 1 180 0 0 0 chr15 11884478 11884498 -73811256 + (TG)n Simple_repeat Simple_repeat 2 21 0 845 108 17 0 chr15 11884498 11884618 -73811136 - AluSq/x SINE Alu -190 122 1 25 0 0 0 chr15 11884641 11884666 -73811088 + AT_rich Low_complexity Low_complexity 1 25 0 343 151 0 0 chr15 11884673 11884726 -73811028 - MER66A LTR ERV1 -138 340 288 342 190 0 0 chr15 11884742 11884800 -73810954 - L1MC5 LINE L1 -845 7116 7059 812 268 109 58 chr15 11884812 11885141 -73810613 - LTR16A LTR ERVL -13 437 92 2521 90 3 0 chr15 11885288 11885600 -73810154 + AluSp SINE Alu 1 313 0 1385 213 92 56 chr15 11886482 11886829 -73808925 + L1MC5 LINE L1 7331 7707 -254 2462 77 0 0 chr15 11886829 11887129 -73808625 - AluY SINE Alu -11 300 1 1385 213 92 56 chr15 11887129 11887348 -73808406 + L1MC5 LINE L1 7707 7917 -44 299 311 0 25 chr15 11887848 11887967 -73807787 + CT-rich Low_complexity Low_complexity 1 116 0 1913 118 97 0 chr15 11888261 11888540 -73807214 + AluSx SINE Alu 3 308 -4 1104 238 116 104 chr15 11888624 11889227 -73806527 + L2 LINE L2 2359 2960 -353 2509 54 0 7 chr15 11889227 11889525 -73806229 - AluY SINE Alu -15 296 1 1104 238 116 104 chr15 11889525 11889839 -73805915 + L2 LINE L2 2960 3269 -44 27 29 0 0 chr15 11889940 11889974 -73805780 + AT_rich Low_complexity Low_complexity 1 34 0 2299 104 0 0 chr15 11890305 11890613 -73805141 - AluY SINE Alu -3 308 1 186 260 125 29 chr15 11890741 11890845 -73804909 + L3b LINE CR1 1272 1385 -198 588 232 68 6 chr15 11891490 11891667 -73804087 - MIR SINE MIR 0 262 75 200 86 29 0 chr15 11892117 11892152 -73803602 + (CAA)n Simple_repeat Simple_repeat 1 36 0 2069 117 0 26 chr15 11892293 11892600 -73803154 - AluSg SINE Alu -11 299 1 2627 62 0 0 chr15 11892611 11892920 -73802834 - AluSc SINE Alu 0 309 1 1351 232 113 41 chr15 11893087 11893599 -73802155 - MLT1H LTR MaLR 0 549 1 1882 94 0 0 chr15 11894082 11894326 -73801428 + AluY SINE Alu 63 306 -5 583 242 66 28 chr15 11895310 11895492 -73800262 + MIR SINE MIR 74 262 0 2307 112 3 0 chr15 11895509 11895813 -73799941 + AluSp SINE Alu 1 305 -8 37 39 0 0 chr15 11895940 11895991 -73799763 + AT_rich Low_complexity Low_complexity 1 51 0 2572 80 0 0 chr15 11896240 11896551 -73799203 + AluY SINE Alu 1 311 0 22 70 0 0 chr15 11896868 11896911 -73798843 + AT_rich Low_complexity Low_complexity 1 43 0 239 240 0 0 chr15 11897441 11897491 -73798263 - Alu SINE Alu -118 185 136 2546 61 0 0 chr15 11898303 11898614 -73797140 + AluY SINE Alu 1 311 0 2833 16 0 0 chr15 11899282 11899588 -73796166 + AluYa5 SINE Alu 1 306 -5 355 291 57 65 chr15 11900817 11901003 -73794751 + MIR SINE MIR 7 192 -70 1940 155 0 3 chr15 11901003 11901306 -73794448 + AluSx SINE Alu 1 302 -10 355 291 57 65 chr15 11901306 11901366 -73794388 + MIR SINE MIR 192 251 -11 2440 56 3 16 chr15 11901452 11901756 -73793998 - AluY SINE Alu -11 300 1 2356 98 7 0 chr15 11902444 11902751 -73793003 - AluSq SINE Alu -3 310 2 1050 98 0 0 chr15 11902753 11902885 -73792869 - AluSq/x SINE Alu -180 132 1 1772 98 0 13 chr15 11903332 11903566 -73792188 - AluSx SINE Alu -81 231 1 304 267 0 12 chr15 11903731 11903817 -73791937 + MIR SINE MIR 164 248 -14 2586 83 0 0 chr15 11903991 11904303 -73791451 + AluSq SINE Alu 1 312 -1 203 290 85 57 chr15 11905734 11905822 -73789932 - MIR SINE MIR -30 232 148 2424 64 0 55 chr15 11905822 11906151 -73789603 - AluY SINE Alu 0 311 1 203 290 85 57 chr15 11906151 11906238 -73789516 - MIR SINE MIR -114 148 52 1977 147 0 13 chr15 11906498 11906811 -73788943 + AluJb SINE Alu 1 309 -3 2347 102 3 0 chr15 11907246 11907550 -73788204 - AluSg SINE Alu -5 305 1 4124 126 22 55 chr15 11907586 11908299 -73787455 + LTR8 LTR ERV1 1 690 -1 416 258 17 33 chr15 11908602 11908722 -73787032 - MER5B DNA MER1_type -1 177 60 198 103 0 0 chr15 11908860 11908889 -73786865 + (T)n Simple_repeat Simple_repeat 1 29 0 186 43 0 0 chr15 11909151 11909174 -73786580 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1906 95 57 4 chr15 11909460 11909723 -73786031 - AluSq SINE Alu -32 281 5 2157 101 13 16 chr15 11909738 11910045 -73785709 - AluSq SINE Alu -7 306 1 254 25 0 50 chr15 11910274 11910314 -73785440 - AluY SINE Alu -264 38 1 3084 198 88 4 chr15 11910317 11911009 -73784745 - L1MD2 LINE L1 -9 6350 5601 5163 130 19 60 chr15 11911109 11911333 -73784421 - L1PA16 LINE L1 -11 6155 5923 2138 128 3 3 chr15 11911333 11911639 -73784115 - AluSq SINE Alu -7 306 1 5163 130 19 60 chr15 11911639 11912163 -73783591 - L1PA16 LINE L1 -243 5923 5459 2094 129 0 3 chr15 11912163 11912457 -73783297 - AluSg SINE Alu -17 293 1 5163 130 19 60 chr15 11912457 11912737 -73783017 - L1PA16 LINE L1 -707 5459 5169 287 195 93 27 chr15 11913104 11913187 -73782567 + MIR SINE MIR 37 125 -83 1385 325 118 36 chr15 11913258 11913317 -73782437 + L2 LINE L2 1698 1751 -1563 2111 106 7 33 chr15 11913317 11913619 -73782135 - AluSx SINE Alu -18 294 1 1385 325 118 36 chr15 11913619 11914741 -73781013 + L2 LINE L2 1751 2976 -338 279 275 100 33 chr15 11914889 11915009 -73780745 + L2 LINE L2 3180 3307 -6 2289 110 3 0 chr15 11915752 11916052 -73779702 - AluSp SINE Alu -10 303 3 445 290 90 63 chr15 11916275 11916640 -73779114 - L2 LINE L2 -2 3311 2937 2365 80 13 0 chr15 11917222 11917521 -73778233 - AluSc SINE Alu -6 303 1 259 210 160 20 chr15 11918150 11918250 -73777504 - L2 LINE L2 0 3313 3200 274 287 53 11 chr15 11918321 11918415 -73777339 - MIR3 SINE MIR -21 187 90 948 144 26 0 chr15 11919315 11919468 -73776286 - L1PA15-16 LINE L1 -6437 412 256 3775 130 60 23 chr15 11919807 11921527 -73774227 + SVA Other Other 395 1151 -235 216 0 0 0 chr15 11921527 11921551 -73774203 + (T)n Simple_repeat Simple_repeat 1 24 0 2519 46 0 3 chr15 11921989 11922291 -73773463 + AluY SINE Alu 1 301 -10 2098 51 0 16 chr15 11923633 11923888 -73771866 + SVA Other Other 1135 1385 -1 2228 106 0 3 chr15 11924719 11925012 -73770742 - AluSq SINE Alu -21 292 1 924 102 8 0 chr15 11925233 11925360 -73770394 + FLAM_C SINE Alu 2 129 -4 445 247 247 16 chr15 11926499 11926693 -73769061 + MIR SINE MIR 3 241 -21 1223 232 140 41 chr15 11926794 11927208 -73768546 + MLT1K LTR MaLR 108 562 -26 454 320 23 0 chr15 11927718 11927846 -73767908 + L2 LINE L2 3139 3269 -3 1993 149 0 10 chr15 11928849 11929157 -73766597 - AluJb SINE Alu -7 305 1 439 328 68 25 chr15 11929392 11929715 -73766039 + L1MC/D LINE L1 5274 5610 -2198 2009 120 3 7 chr15 11929719 11930042 -73765712 + AluSx SINE Alu 1 322 0 228 170 0 0 chr15 11930092 11930145 -73765609 + L1MC4 LINE L1 6649 6701 -1341 247 256 100 33 chr15 11930159 11930249 -73765505 + L1MC/D LINE L1 5667 5762 -2046 203 314 14 29 chr15 11930441 11930511 -73765243 - MIR SINE MIR -113 95 27 227 120 0 60 chr15 11931433 11931483 -73764271 + (CGG)n Simple_repeat Simple_repeat 2 48 0 273 29 0 0 chr15 11931617 11931651 -73764103 + (CAA)n Simple_repeat Simple_repeat 2 35 0 2454 79 0 0 chr15 11931718 11932022 -73763732 + AluY SINE Alu 1 304 -7 1021 165 6 0 chr15 11932086 11932256 -73763498 + L1PB4 LINE L1 5986 6156 0 26 30 0 0 chr15 11932758 11932791 -73762963 + AT_rich Low_complexity Low_complexity 1 33 0 2380 98 0 0 chr15 11933707 11934004 -73761750 + AluSg1 SINE Alu 1 297 -12 244 143 0 71 chr15 11934190 11934246 -73761508 - L1MC4 LINE L1 -1339 6703 6652 666 117 0 0 chr15 11935176 11935270 -73760484 + AluS SINE Alu 1 94 -219 2251 130 2 42 chr15 11935795 11936195 -73759559 + MLT1B LTR MaLR 7 390 0 320 293 77 28 chr15 11936625 11936806 -73758948 - L2 LINE L2 -353 2961 2772 25 83 0 0 chr15 11937700 11937760 -73757994 + AT_rich Low_complexity Low_complexity 1 60 0 410 235 67 42 chr15 11937787 11937906 -73757848 + MIR SINE MIR 2 123 -139 29 0 0 0 chr15 11939139 11939168 -73756586 + AT_rich Low_complexity Low_complexity 1 29 0 2412 96 0 0 chr15 11940273 11940576 -73755178 + AluSq SINE Alu 1 303 -10 24 53 0 0 chr15 11940873 11940911 -73754843 + AT_rich Low_complexity Low_complexity 1 38 0 194 157 0 39 chr15 11941912 11941963 -73753791 + CT-rich Low_complexity Low_complexity 4 52 0 331 314 42 0 chr15 11941966 11942084 -73753670 - L2 LINE L2 0 3313 3191 2212 125 0 6 chr15 11942259 11942572 -73753182 - AluSx SINE Alu 0 312 2 23 0 0 0 chr15 11943841 11943864 -73751890 + AT_rich Low_complexity Low_complexity 1 23 0 256 325 204 30 chr15 11944300 11944531 -73751223 - L2 LINE L2 -16 3256 2986 985 271 96 43 chr15 11944611 11945102 -73750652 - LTR33A LTR ERVL -5 518 2 1467 261 134 12 chr15 11945329 11945820 -73749934 + MLT1H1 LTR MaLR 2 552 -3 905 232 23 18 chr15 11945937 11946157 -73749597 - MER58A DNA MER1_type -3 221 1 2428 65 3 0 chr15 11949335 11949628 -73746126 + AluSp SINE Alu 1 294 -19 1985 85 8 4 chr15 11949775 11950033 -73745721 + AluSc SINE Alu 40 298 -11 1947 153 0 7 chr15 11950037 11950338 -73745416 + AluSx SINE Alu 1 299 -13 314 294 200 12 chr15 11951230 11951390 -73744364 + MIR SINE MIR 2 191 -71 485 126 126 0 chr15 11954661 11954748 -73741006 - AluSx SINE Alu -19 290 193 1143 103 0 0 chr15 11954749 11954895 -73740859 - AluSx SINE Alu -167 146 1 341 287 76 25 chr15 11955492 11955649 -73740105 - MIR SINE MIR 0 262 98 1998 113 3 58 chr15 11958791 11959120 -73736634 - AluSx SINE Alu -1 311 1 545 171 18 9 chr15 11959244 11959355 -73736399 + L1MB3 LINE L1 5577 5688 -495 462 196 165 0 chr15 11959373 11959470 -73736284 - L2 LINE L2 -10 3303 3191 25 51 0 0 chr15 11960472 11960511 -73735243 + GC_rich Low_complexity Low_complexity 1 39 0 2475 158 33 4 chr15 11960619 11961069 -73734685 + L1MB3 LINE L1 5675 6137 -46 2425 62 7 13 chr15 11961074 11961378 -73734376 + AluSq SINE Alu 1 302 -11 2230 105 0 0 chr15 11961388 11961682 -73734072 + AluY SINE Alu 1 294 -17 227 222 0 0 chr15 11962416 11962461 -73733293 + MIR SINE MIR 192 236 -26 197 311 22 33 chr15 11963272 11963362 -73732392 + L2 LINE L2 3180 3268 -4 23 33 0 0 chr15 11963756 11963786 -73731968 + AT_rich Low_complexity Low_complexity 1 30 0 27 87 0 0 chr15 11964599 11964668 -73731086 + AT_rich Low_complexity Low_complexity 1 69 0 2304 90 0 0 chr15 11964680 11964970 -73730784 - AluSx SINE Alu -22 290 1 23 0 0 0 chr15 11964976 11964999 -73730755 + AT_rich Low_complexity Low_complexity 1 23 0 2374 88 0 7 chr15 11965128 11965434 -73730320 - AluSg SINE Alu -6 304 1 1052 90 0 0 chr15 11965437 11965570 -73730184 - AluSq/x SINE Alu -180 133 1 2616 60 17 22 chr15 11965577 11966107 -73729647 - LTR17 LTR ERV1 -196 584 1 2245 92 7 0 chr15 11966295 11966587 -73729167 + AluSc SINE Alu 1 294 -15 1902 104 18 11 chr15 11967641 11967954 -73727800 - AluSx SINE Alu 0 315 1 25 0 0 0 chr15 11968508 11968533 -73727221 + AT_rich Low_complexity Low_complexity 1 25 0 2490 93 3 0 chr15 11968537 11968849 -73726905 - AluSp SINE Alu 0 313 1 1609 165 4 18 chr15 11969122 11969401 -73726353 + AluJb SINE Alu 1 275 -37 347 316 51 0 chr15 11969934 11970051 -73725703 + L2 LINE L2 3189 3311 -2 229 364 24 57 chr15 11970935 11971232 -73724522 - L2 LINE L2 -406 2908 2622 22 0 0 0 chr15 11973251 11973273 -73722481 + AT_rich Low_complexity Low_complexity 1 22 0 402 294 74 2 chr15 11974608 11974763 -73720991 - MER5A DNA MER1_type 0 189 12 390 274 68 0 chr15 11974859 11974976 -73720778 - L2 LINE L2 0 3313 3189 248 276 81 23 chr15 11975234 11975321 -73720433 - L2 LINE L2 0 3313 3222 4031 146 44 22 chr15 11975471 11976131 -73719623 + L1MA4 LINE L1 5491 6173 -127 297 51 0 0 chr15 11976131 11976170 -73719584 + (CA)n Simple_repeat Simple_repeat 2 40 0 4031 146 44 22 chr15 11976170 11976297 -73719457 + L1MA4 LINE L1 6173 6296 -4 304 128 59 59 chr15 11976309 11976411 -73719343 - Zaphod DNA AcHobo -3112 919 818 1326 322 86 17 chr15 11976447 11977027 -73718727 - L2 LINE L2 -338 2976 2357 237 196 0 54 chr15 11977929 11977985 -73717769 + CT-rich Low_complexity Low_complexity 3 55 0 501 299 41 7 chr15 11978327 11978474 -73717280 - MIR SINE MIR -22 240 89 1912 123 95 0 chr15 11979091 11979376 -73716378 + AluSx SINE Alu 1 312 0 2553 93 0 0 chr15 11979672 11979984 -73715770 + AluSx SINE Alu 1 312 0 198 0 0 0 chr15 11981001 11981023 -73714731 + (T)n Simple_repeat Simple_repeat 1 22 0 26 30 0 0 chr15 11981097 11981130 -73714624 + AT_rich Low_complexity Low_complexity 1 33 0 238 264 46 90 chr15 11981639 11981909 -73713845 + L3 LINE CR1 1227 1543 -34 277 245 85 0 chr15 11982204 11982298 -73713456 - L1MC5 LINE L1 -30 7931 7830 1768 198 62 37 chr15 11982323 11982807 -73712947 + MLT1D LTR MaLR 7 502 -3 31 44 0 0 chr15 11983043 11983088 -73712666 + AT_rich Low_complexity Low_complexity 1 45 0 1267 190 118 14 chr15 11983515 11983794 -73711960 + AluJo SINE Alu 1 308 -4 1926 132 26 166 chr15 11984351 11984888 -73710866 + MLT2C2 LTR ERVL 1 462 -2 1715 177 7 0 chr15 11986813 11987101 -73708653 + AluJo SINE Alu 1 290 -22 2482 58 0 0 chr15 11987737 11988029 -73707725 - AluY SINE Alu -19 292 1 441 200 87 9 chr15 11988792 11988907 -73706847 - L1ME4a LINE L1 -54 6067 5944 227 204 0 0 chr15 11989449 11989493 -73706261 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 387 0 0 0 chr15 11989714 11989757 -73705997 + (TG)n Simple_repeat Simple_repeat 2 44 0 965 260 22 4 chr15 11990736 11990967 -73704787 - MIR SINE MIR -22 240 6 199 411 36 9 chr15 11992149 11992261 -73703493 + L2 LINE L2 2422 2536 -778 209 289 22 0 chr15 11992326 11992371 -73703383 - MIR SINE MIR -142 66 21 278 320 11 45 chr15 11992612 11992790 -73702964 + L2 LINE L2 1538 1709 -1605 2277 92 0 3 chr15 11992878 11993181 -73702573 - AluSg SINE Alu -8 302 1 181 346 59 0 chr15 11993287 11993388 -73702366 + L2 LINE L2 1881 1987 -1327 * 257 246 0 0 chr15 11993384 11993441 -73702313 - L2 LINE L2 0 3272 3216 552 233 122 11 chr15 11994896 11995061 -73700693 - MER5A DNA MER1_type 0 189 4 4779 149 51 6 chr15 11995082 11995909 -73699845 + MER6 DNA MER2_type 2 865 0 291 225 12 38 chr15 11995955 11996035 -73699719 - MER103 DNA DNA -17 149 72 2190 122 3 0 chr15 11996132 11996443 -73699311 - AluSq SINE Alu -1 312 1 1139 184 147 7 chr15 11996626 11996925 -73698829 + MER58B DNA MER1_type 1 341 0 204 97 0 0 chr15 11997346 11997377 -73698377 + (GA)n Simple_repeat Simple_repeat 2 32 0 1262 138 51 12 chr15 11997719 11997973 -73697781 + L1MA6 LINE L1 6037 6300 0 443 253 127 0 chr15 11997998 11998156 -73697598 + MIR SINE MIR 85 262 0 231 208 38 0 chr15 11998185 11998238 -73697516 + L2 LINE L2 3258 3312 -1 436 357 39 18 chr15 11998950 11999178 -73696576 - MIR SINE MIR -30 232 3 1360 264 123 50 chr15 12002460 12003059 -73692695 + L2 LINE L2 1063 1705 -1609 4753 124 40 6 chr15 12003068 12003849 -73691905 + L1PA16 LINE L1 5357 6163 -3 1903 295 93 80 chr15 12003853 12004081 -73691673 + L2 LINE L2 1713 1937 -1376 1720 131 10 39 chr15 12004081 12004387 -73691367 - L1PA15 LINE L1 0 6165 5869 1903 295 93 80 chr15 12004387 12004488 -73691266 + L2 LINE L2 1937 2035 -1278 2572 35 0 0 chr15 12004488 12004799 -73690955 + L1PA4 LINE L1 5845 6155 0 1903 295 93 80 chr15 12004799 12005148 -73690606 + L2 LINE L2 2035 2378 -935 1607 168 40 114 chr15 12005148 12005552 -73690202 + MLT1A2 LTR MaLR 1 374 0 1903 295 93 80 chr15 12005552 12006448 -73689306 + L2 LINE L2 2378 3311 -2 22 0 0 0 chr15 12008036 12008058 -73687696 + AT_rich Low_complexity Low_complexity 1 22 0 21 89 0 0 chr15 12008176 12008232 -73687522 + AT_rich Low_complexity Low_complexity 1 56 0 999 251 37 33 chr15 12009694 12010183 -73685571 + MER39 LTR ERV1 18 542 0 231 292 18 62 chr15 12010929 12011042 -73684712 - MIR SINE MIR -50 212 105 24 0 0 0 chr15 12011210 12011234 -73684520 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr15 12011830 12011858 -73683896 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr15 12012300 12012330 -73683424 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr15 12015254 12015291 -73680463 + AT_rich Low_complexity Low_complexity 1 37 0 2002 130 10 79 chr15 12015303 12015505 -73680249 - Tigger4(Zombi) DNA MER2_type -1 2730 2566 2302 114 0 0 chr15 12015505 12015811 -73679943 - AluSg SINE Alu -4 306 1 2002 130 10 79 chr15 12015811 12015999 -73679755 - Tigger4(Zombi) DNA MER2_type -165 2566 2367 459 165 101 0 chr15 12016023 12016102 -73679652 - Tigger4(Zombi) DNA MER2_type -2644 87 1 1061 149 0 0 chr15 12016344 12016498 -73679256 - FAM SINE Alu -18 157 4 486 172 35 0 chr15 12016534 12016621 -73679133 - AluJb SINE Alu -111 201 112 25 31 0 0 chr15 12016621 12016653 -73679101 + AT_rich Low_complexity Low_complexity 1 32 0 637 312 88 71 chr15 12016805 12017353 -73678401 + L2 LINE L2 2325 2881 -433 427 297 25 0 chr15 12017562 12017680 -73678074 - L2 LINE L2 0 3313 3193 2445 68 3 0 chr15 12020120 12020416 -73675338 - AluSp SINE Alu -16 297 1 1646 169 19 36 chr15 12020938 12021246 -73674508 + AluJo SINE Alu 1 303 -9 306 0 0 0 chr15 12021246 12021280 -73674474 + (CAT)n Simple_repeat Simple_repeat 2 35 0 2279 95 0 7 chr15 12021303 12021598 -73674156 + AluSp SINE Alu 1 293 -20 678 184 0 26 chr15 12021604 12021756 -73673998 - L1MA6 LINE L1 -9 6291 6144 2563 88 5 37 chr15 12021877 12022251 -73673503 - THE1B LTR MaLR 0 364 3 286 388 39 0 chr15 12022459 12022562 -73673192 + L2 LINE L2 3149 3255 -17 2289 115 3 0 chr15 12022570 12022882 -73672872 + AluSp SINE Alu 1 313 0 329 250 116 47 chr15 12022897 12023173 -73672581 + L1ME4a LINE L1 5562 5856 -265 468 0 0 0 chr15 12024038 12024090 -73671664 + (CA)n Simple_repeat Simple_repeat 2 53 0 1385 143 29 97 chr15 12024151 12024430 -73671324 - AluJb SINE Alu -49 263 4 474 310 69 0 chr15 12024672 12024817 -73670937 + MIR SINE MIR 15 169 -93 21 57 0 0 chr15 12025125 12025160 -73670594 + AT_rich Low_complexity Low_complexity 1 35 0 324 0 0 0 chr15 12025866 12025902 -73669852 + (T)n Simple_repeat Simple_repeat 1 36 0 274 246 156 96 chr15 12029315 12029370 -73666384 - MIR3 SINE MIR -1 207 157 2369 48 19 32 chr15 12029370 12029679 -73666075 - AluY SINE Alu -6 305 1 274 246 156 96 chr15 12029679 12029790 -73665964 - MIR3 SINE MIR -51 157 31 227 264 19 0 chr15 12030037 12030090 -73665664 - MIR3 SINE MIR -24 184 131 698 136 33 2 chr15 12030419 12030551 -73665203 + L1M3 LINE L1 5474 5613 -555 238 220 17 17 chr15 12030621 12030680 -73665074 - L2 LINE L2 -1 3271 3213 218 276 173 11 chr15 12030684 12030832 -73664922 + MIR SINE MIR 5 256 -6 1153 176 107 76 chr15 12031349 12031639 -73664115 + AluJo SINE Alu 1 299 -3 4433 125 26 30 chr15 12031656 12032393 -73663361 + MER50 LTR ERV1 1 734 0 812 164 62 0 chr15 12032393 12032533 -73663221 + FRAM SINE Alu 11 159 -17 859 233 173 63 chr15 12033290 12033847 -73661907 - LTR29 LTR ERV1 0 747 141 3126 154 38 62 chr15 12033847 12034555 -73661199 - LTR8 LTR ERV1 0 691 1 859 233 173 63 chr15 12034555 12034714 -73661040 - LTR29 LTR ERV1 -606 141 1 362 285 95 29 chr15 12035091 12035228 -73660526 - MIR SINE MIR -107 155 10 2187 173 51 27 chr15 12035262 12035712 -73660042 + LOR1b LTR ERV1 1 461 0 299 288 72 33 chr15 12035877 12036030 -73659724 + MIR SINE MIR 101 259 -3 321 270 29 66 chr15 12036404 12036541 -73659213 - L2 LINE L2 0 3313 3182 28 91 0 0 chr15 12036974 12037051 -73658703 + AT_rich Low_complexity Low_complexity 1 77 0 372 22 0 0 chr15 12037973 12038018 -73657736 + (GA)n Simple_repeat Simple_repeat 2 46 0 313 220 0 181 chr15 12038303 12038402 -73657352 - MIR SINE MIR -21 241 186 2958 162 41 2 chr15 12038402 12038964 -73656790 - L1MA4 LINE L1 -6 6294 5711 313 220 0 181 chr15 12038964 12039041 -73656713 - MIR SINE MIR -76 186 97 2811 215 23 0 chr15 12040911 12041473 -73654281 - L1MD3 LINE L1 0 7995 7421 252 243 40 14 chr15 12041478 12041552 -73654202 - MLT1F1 LTR MaLR -436 131 64 1193 243 11 8 chr15 12041598 12041865 -73653889 - L1MD3 LINE L1 -1023 6972 6705 29 21 0 21 chr15 12042066 12042086 -73653668 + AT_rich Low_complexity Low_complexity 1 20 -26 828 240 12 0 chr15 12042086 12042257 -73653497 + FAM SINE Alu 1 173 -2 29 21 0 21 chr15 12042257 12042283 -73653471 + AT_rich Low_complexity Low_complexity 20 46 0 1284 134 27 0 chr15 12042698 12042921 -73652833 + L1 LINE L1 4382 4610 -1536 11200 238 25 29 chr15 12042921 12043292 -73652462 - L1PA12 LINE L1 -2471 5113 4742 2567 64 0 0 chr15 12043292 12043603 -73652151 - AluY SINE Alu 0 311 1 11200 238 25 29 chr15 12043603 12043883 -73651871 - L1PA12 LINE L1 -2842 4742 4462 4643 36 0 2 chr15 12043883 12044439 -73651315 + L1PA5 LINE L1 5593 6147 -7 11200 238 25 29 chr15 12044439 12044565 -73651189 - L1PA12 LINE L1 -3122 4462 4337 2012 141 0 0 chr15 12044565 12044875 -73650879 - AluSx SINE Alu 0 310 1 11200 238 25 29 chr15 12044875 12047876 -73647878 - L1PA12 LINE L1 -3247 4337 1 858 168 46 55 chr15 12048160 12048398 -73647356 - L1MC5 LINE L1 -113 7848 7613 215 293 78 78 chr15 12048920 12049036 -73646718 - L2 LINE L2 -8 3305 3190 323 278 18 31 chr15 12050278 12050418 -73645336 - MIR SINE MIR -9 199 63 505 304 98 16 chr15 12050421 12050974 -73644780 - L1M4 LINE L1 -1781 4365 3658 1092 191 125 78 chr15 12050975 12051384 -73644370 - LTR37B LTR ERV1 -2 466 39 194 192 96 39 chr15 12052314 12052366 -73643388 - L2 LINE L2 -8 3264 3210 21 71 0 0 chr15 12052385 12052427 -73643327 + AT_rich Low_complexity Low_complexity 1 42 0 2115 111 23 13 chr15 12053132 12053438 -73642316 - AluSq SINE Alu -3 310 2 21 71 0 0 chr15 12054272 12054314 -73641440 + AT_rich Low_complexity Low_complexity 1 42 0 409 231 0 13 chr15 12054753 12054831 -73640923 - L2 LINE L2 -2 3270 3194 27 29 0 0 chr15 12054953 12054987 -73640767 + AT_rich Low_complexity Low_complexity 1 34 0 226 219 161 97 chr15 12055104 12055414 -73640340 - L1ME4a LINE L1 -3 6118 5789 318 316 88 45 chr15 12055526 12056100 -73639654 - L1 LINE L1 -1310 4836 4224 24 32 0 0 chr15 12057592 12057623 -73638131 + AT_rich Low_complexity Low_complexity 1 31 0 201 250 59 73 chr15 12059918 12059986 -73635768 - L2 LINE L2 -11 3261 3195 1872 166 7 7 chr15 12061265 12061573 -73634181 - AluJo SINE Alu -4 308 1 22 56 0 0 chr15 12062364 12062400 -73633354 + AT_rich Low_complexity Low_complexity 1 36 0 33 0 0 0 chr15 12063111 12063144 -73632610 + AT_rich Low_complexity Low_complexity 1 33 0 252 0 0 0 chr15 12065174 12065202 -73630552 + (T)n Simple_repeat Simple_repeat 1 28 0 2579 37 0 0 chr15 12068058 12068355 -73627399 + AluY SINE Alu 1 297 -14 1160 234 32 41 chr15 12068643 12068842 -73626912 + L2 LINE L2 2423 2619 -695 2192 99 3 3 chr15 12068842 12069135 -73626619 - AluSq SINE Alu -20 293 1 1160 234 32 41 chr15 12069135 12069251 -73626503 + L2 LINE L2 2619 2735 -579 1324 175 91 29 chr15 12069625 12069899 -73625855 - AluJo SINE Alu -21 291 1 723 326 23 16 chr15 12069909 12070167 -73625587 - MIR SINE MIR 0 262 3 196 283 128 47 chr15 12070319 12070446 -73625308 + MIR SINE MIR 7 150 -64 332 348 89 0 chr15 12070845 12070980 -73624774 - L2 LINE L2 0 3272 3126 22 0 0 0 chr15 12071351 12071373 -73624381 + AT_rich Low_complexity Low_complexity 1 22 0 2510 65 3 0 chr15 12071572 12071879 -73623875 - AluSq SINE Alu -5 308 1 1635 160 91 9 chr15 12072034 12072352 -73623402 + MER2 DNA MER2_type 1 344 0 299 80 0 0 chr15 12074550 12074600 -73621154 + Alu SINE Alu 252 301 -1 1755 155 26 16 chr15 12075261 12075565 -73620189 - AluJo SINE Alu -5 307 1 2401 55 0 7 chr15 12075578 12075871 -73619883 - AluY SINE Alu -16 295 5 213 94 0 0 chr15 12076571 12076603 -73619151 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 183 256 0 0 chr15 12076613 12076652 -73619102 - L2 LINE L2 -48 3224 3186 215 364 57 0 chr15 12078651 12078739 -73617015 - L2 LINE L2 -24 3248 3156 2372 60 0 0 chr15 12079752 12080083 -73615671 + AluY SINE Alu 1 331 0 23 33 0 0 chr15 12080765 12080795 -73614959 + AT_rich Low_complexity Low_complexity 1 30 0 242 384 114 7 chr15 12080862 12081143 -73614611 - L3b LINE CR1 -157 1426 1116 1920 34 151 8 chr15 12081335 12081600 -73614154 - AluY SINE Alu -8 303 1 2495 45 0 29 chr15 12081650 12081962 -73613792 - AluY SINE Alu -8 303 1 548 321 21 21 chr15 12082698 12082891 -73612863 - MIR SINE MIR -57 205 13 192 40 0 0 chr15 12083110 12083135 -73612619 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 738 294 30 21 chr15 12083717 12083908 -73611846 + MIR SINE MIR 2 197 -65 1249 219 88 12 chr15 12083908 12084227 -73611527 - MER2 DNA MER2_type 0 344 2 738 294 30 21 chr15 12084227 12084270 -73611484 + MIR SINE MIR 197 238 -24 2066 154 45 38 chr15 12084300 12084491 -73611263 + MSTB LTR MaLR 1 189 -237 2269 95 7 0 chr15 12084491 12084797 -73610957 + AluSx SINE Alu 1 308 -4 2066 154 45 38 chr15 12084797 12085002 -73610752 + MSTB LTR MaLR 189 400 -26 1884 85 7 44 chr15 12085019 12085312 -73610442 - L1PB1 LINE L1 -3 7567 7286 * 7977 88 4 14 chr15 12085311 12086782 -73608972 + L1PA8 LINE L1 4190 5651 -521 2372 68 0 3 chr15 12086782 12087079 -73608675 - AluY SINE Alu -18 293 1 4135 68 0 0 chr15 12087079 12087596 -73608158 + L1PA8 LINE L1 5656 6172 0 7977 88 4 14 chr15 12087079 12087593 -73608161 + L1PA8 LINE L1 5651 6169 -3 5952 169 17 0 chr15 12087597 12089303 -73606451 - L1PB1 LINE L1 -280 7290 5557 275 88 14 0 chr15 12089303 12089345 -73606409 + MSTB LTR MaLR 380 427 -1 9672 165 36 17 chr15 12089346 12090632 -73605122 + MSTB-int LTR MaLR 1 1326 -325 2189 116 0 7 chr15 12090632 12090935 -73604819 + AluSc SINE Alu 1 301 -8 9672 165 36 17 chr15 12090935 12091268 -73604486 + MSTB-int LTR MaLR 1326 1651 0 2388 172 32 2 chr15 12091269 12091676 -73604078 + MSTB LTR MaLR 2 420 -6 1474 170 91 65 chr15 12091681 12092022 -73603732 + MLT1A2 LTR MaLR 25 374 0 1380 51 0 0 chr15 12092821 12092979 -73602775 - L1PA3 LINE L1 -2 6153 5996 1741 230 8 0 chr15 12093502 12093893 -73601861 - L1PB1 LINE L1 -3137 4428 4035 1634 117 8 30 chr15 12093896 12094162 -73601592 - L1PB1 LINE L1 -4250 3315 3056 1214 178 14 0 chr15 12094166 12094380 -73601374 - AluJb SINE Alu -10 302 86 18095 154 36 7 chr15 12094381 12097358 -73598396 - L1PB1 LINE L1 -4501 3064 2 2407 170 24 19 chr15 12097358 12097782 -73597972 - MSTB LTR MaLR 0 426 1 604 285 86 77 chr15 12097782 12098038 -73597716 - L2 LINE L2 -2404 910 649 2219 120 0 3 chr15 12098038 12098346 -73597408 + AluSg SINE Alu 1 307 -3 604 285 86 77 chr15 12098346 12098426 -73597328 - L2 LINE L2 -2665 649 571 614 278 37 42 chr15 12098498 12098764 -73596990 + L1MC4a LINE L1 5536 5750 -371 1990 146 0 3 chr15 12098764 12099065 -73596689 + AluSq SINE Alu 1 300 -13 614 278 37 42 chr15 12099065 12099140 -73596614 + L1MC4a LINE L1 5750 5824 -297 612 320 173 18 chr15 12099431 12099871 -73595883 + L2 LINE L2 2806 3313 0 319 242 88 84 chr15 12100952 12101167 -73594587 + LTR16A1 LTR ERVL 181 396 -61 229 121 0 0 chr15 12101332 12101365 -73594389 + LTR16B LTR ERVL 255 287 -177 2558 48 0 10 chr15 12102095 12102406 -73593348 + AluY SINE Alu 1 308 -3 338 188 0 26 chr15 12103564 12103681 -73592073 + GA-rich Low_complexity Low_complexity 1 114 0 2862 88 58 21 chr15 12104367 12104799 -73590955 + LTR7 LTR ERV1 1 448 -2 17856 89 8 10 chr15 12104801 12107915 -73587839 + HERVH LTR ERV1 1 2987 -4726 940 128 20 0 chr15 12107909 12108057 -73587697 + HERVH LTR ERV1 3140 3290 -4423 * 938 149 0 7 chr15 12108047 12108195 -73587559 + HERVH LTR ERV1 3492 3638 -4075 * 1204 144 3 4 chr15 12108185 12108546 -73587208 + HERVH LTR ERV1 4744 5149 -2564 2685 96 42 35 chr15 12108547 12109142 -73586612 + HERVH LTR ERV1 5600 7713 0 2840 97 58 21 chr15 12109142 12109574 -73586180 + LTR7 LTR ERV1 1 448 -2 447 327 67 0 chr15 12110527 12110692 -73585062 + MIR3 SINE MIR 23 198 -10 2532 50 0 0 chr15 12110971 12111268 -73584486 - AluY SINE Alu -8 303 7 2218 77 81 5 chr15 12111624 12111988 -73583766 + LTR7 LTR ERV1 1 448 -2 236 184 61 0 chr15 12112034 12112083 -73583671 - L2 LINE L2 0 3313 3262 3153 162 52 35 chr15 12113838 12114494 -73581260 + MER39 LTR ERV1 1 707 0 22 0 0 0 chr15 12114540 12114562 -73581192 + AT_rich Low_complexity Low_complexity 1 22 0 222 130 19 37 chr15 12115594 12115613 -73580141 + A-rich Low_complexity Low_complexity 5 23 -34 2412 61 0 49 chr15 12115613 12115940 -73579814 + AluY SINE Alu 1 311 0 222 130 19 37 chr15 12115940 12115974 -73579780 + A-rich Low_complexity Low_complexity 23 57 0 24 32 0 0 chr15 12116486 12116517 -73579237 + AT_rich Low_complexity Low_complexity 1 31 0 327 191 0 15 chr15 12116938 12117006 -73578748 - L1PA15 LINE L1 -9 6156 6090 203 327 66 66 chr15 12117116 12117373 -73578381 + L2 LINE L2 2635 2891 -423 1772 122 72 4 chr15 12117594 12117856 -73577898 + AluSq SINE Alu 6 285 -28 186 43 0 0 chr15 12117856 12117879 -73577875 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 460 239 103 0 chr15 12117905 12118022 -73577732 - MIR SINE MIR -27 235 107 474 207 8 25 chr15 12118099 12118220 -73577534 + MER103 DNA DNA 3 121 -45 183 255 59 20 chr15 12118262 12118313 -73577441 - MER5C DNA MER1_type -271 53 1 239 311 14 0 chr15 12118774 12118848 -73576906 + MIR3 SINE MIR 118 192 -16 2213 108 90 58 chr15 12120399 12120833 -73574921 - LTR7 LTR ERV1 -2 448 1 306 244 25 17 chr15 12121646 12121765 -73573989 + (TA)n Simple_repeat Simple_repeat 2 121 0 2012 177 48 11 chr15 12121766 12122200 -73573554 - L1MC3 LINE L1 -22 7763 7314 24 0 0 0 chr15 12123204 12123228 -73572526 + AT_rich Low_complexity Low_complexity 1 24 0 306 0 0 0 chr15 12123503 12123537 -73572217 + (TG)n Simple_repeat Simple_repeat 1 34 0 443 323 68 0 chr15 12124179 12124340 -73571414 - MIR3 SINE MIR -3 205 34 2196 99 7 0 chr15 12124607 12124900 -73570854 + AluSg SINE Alu 1 295 -15 2412 86 3 0 chr15 12125841 12126144 -73569610 - AluSg SINE Alu -6 304 1 64 50 0 0 chr15 12126192 12126291 -73569463 + AT_rich Low_complexity Low_complexity 1 99 0 1915 154 0 0 chr15 12127301 12127586 -73568168 + AluJo SINE Alu 12 296 -16 1439 54 0 0 chr15 12128165 12128333 -73567421 + AluY SINE Alu 1 168 -143 688 197 47 8 chr15 12128452 12128605 -73567149 - L1MC2 LINE L1 0 6333 6175 1122 161 103 179 chr15 12128606 12129035 -73566719 - MSTD LTR MaLR 0 396 1 2824 228 166 19 chr15 12129086 12129822 -73565932 - MSTD-int LTR MaLR 0 1735 892 3639 196 18 31 chr15 12129835 12130564 -73565190 - MSTD-int LTR MaLR -970 765 45 4614 86 16 80 chr15 12130564 12131274 -73564480 - MER4A LTR ERV1 0 664 1 3639 196 18 31 chr15 12131274 12131318 -73564436 - MSTD-int LTR MaLR -1690 45 2 1325 226 77 64 chr15 12131318 12131656 -73564098 - MSTD LTR MaLR -2 394 49 2319 79 0 0 chr15 12131656 12131947 -73563807 + AluY SINE Alu 1 291 -20 1325 226 77 64 chr15 12131947 12131997 -73563757 - MSTD LTR MaLR -347 49 1 992 169 0 6 chr15 12131997 12132175 -73563579 - L1MC2 LINE L1 -162 6182 6006 196 292 0 0 chr15 12132409 12132457 -73563297 + L2 LINE L2 3020 3067 -205 183 243 54 54 chr15 12132475 12132549 -73563205 - L2 LINE L2 0 3313 3240 1898 152 0 32 chr15 12132952 12133261 -73562493 - AluJo SINE Alu -12 300 2 902 108 0 38 chr15 12133783 12133968 -73561786 + (TTC)n Simple_repeat Simple_repeat 2 179 0 1875 133 31 3 chr15 12133969 12134378 -73561376 - AluSg SINE Alu 0 417 1 342 0 0 0 chr15 12134541 12134579 -73561175 + (CA)n Simple_repeat Simple_repeat 2 39 0 37 23 0 0 chr15 12135328 12135372 -73560382 + AT_rich Low_complexity Low_complexity 1 44 0 2048 159 10 0 chr15 12135585 12135893 -73559861 - AluJo SINE Alu -1 311 1 2621 113 8 24 chr15 12136043 12136413 -73559341 + THE1B LTR MaLR 1 364 0 394 314 127 37 chr15 12145374 12145673 -73550081 - L2 LINE L2 0 3313 2988 553 289 250 22 chr15 12145960 12146468 -73549286 + L2 LINE L2 178 801 -2513 403 263 51 51 chr15 12146475 12146692 -73549062 - MER112 DNA MER1_type -12 248 32 2088 87 0 60 chr15 12146694 12147020 -73548734 - AluY SINE Alu 0 308 1 1842 285 127 104 chr15 12147059 12147583 -73548171 + L2 LINE L2 807 1317 -1997 1346 7 0 0 chr15 12147583 12147729 -73548025 - AluYb8 SINE Alu -16 302 157 1842 285 127 104 chr15 12147729 12148815 -73546939 + L2 LINE L2 1317 2603 -711 386 321 66 29 chr15 12150425 12150699 -73545055 + L2 LINE L2 2982 3265 -48 268 306 10 10 chr15 12150752 12150850 -73544904 - L2 LINE L2 -674 2640 2543 901 309 139 23 chr15 12150890 12151414 -73544340 - L2 LINE L2 -351 2963 2379 468 197 111 0 chr15 12151991 12152108 -73543646 + MER94 DNA DNA 4 133 -1 28 22 0 22 chr15 12152456 12152469 -73543285 + AT_rich Low_complexity Low_complexity 1 13 -32 2078 118 0 10 chr15 12152469 12152758 -73542996 + AluSx SINE Alu 1 286 -26 28 22 0 22 chr15 12152758 12152790 -73542964 + AT_rich Low_complexity Low_complexity 13 45 0 41 0 0 0 chr15 12154086 12154127 -73541627 + AT_rich Low_complexity Low_complexity 1 41 0 296 368 7 15 chr15 12154939 12155075 -73540679 - MIR3 SINE MIR -50 158 24 1091 262 86 66 chr15 12157902 12158493 -73537261 + L1MC4 LINE L1 7297 7899 -143 203 272 12 0 chr15 12158503 12158584 -73537170 + (TA)n Simple_repeat Simple_repeat 2 83 0 1622 152 12 0 chr15 12158773 12159017 -73536737 + AluJb SINE Alu 1 247 -65 225 0 0 0 chr15 12159017 12159042 -73536712 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 803 110 59 0 chr15 12159071 12159207 -73536547 + L1MA7 LINE L1 6148 6291 0 303 219 406 0 chr15 12160819 12160942 -73534812 + MER5B DNA MER1_type 1 173 -5 2250 84 0 39 chr15 12161551 12161885 -73533869 + AluSp SINE Alu 1 313 0 998 250 49 46 chr15 12162448 12162732 -73533022 + L3 LINE CR1 1292 1576 -1 195 100 0 0 chr15 12162785 12162815 -73532939 + (A)n Simple_repeat Simple_repeat 1 30 0 3794 165 26 32 chr15 12163493 12163729 -73532025 - L1 LINE L1 -1183 4963 4727 2031 132 0 17 chr15 12163729 12164024 -73531730 + AluSx SINE Alu 1 290 -22 3794 165 26 32 chr15 12164024 12164557 -73531197 - L1 LINE L1 -1419 4727 4199 2127 174 7 7 chr15 12164559 12164990 -73530764 + L1MA4 LINE L1 4973 5403 -743 9113 108 14 1 chr15 12165005 12166262 -73529492 + HSMAR1 DNA Mariner 2 1274 -13 4725 163 13 5 chr15 12166265 12167120 -73528634 + L1MA4 LINE L1 5434 6295 -5 556 287 117 30 chr15 12167124 12167513 -73528241 + L1ME LINE L1 924 1512 -4904 411 289 53 41 chr15 12167517 12167760 -73527994 + L1ME LINE L1 1550 1809 -4628 1842 149 13 13 chr15 12167760 12168061 -73527693 + AluJb SINE Alu 1 301 -11 411 289 53 41 chr15 12168061 12168083 -73527671 + L1ME LINE L1 1809 1829 -4608 821 149 29 6 chr15 12168085 12168259 -73527495 + GA-rich Low_complexity Low_complexity 1 178 0 332 279 9 65 chr15 12168259 12168474 -73527280 + L1ME LINE L1 1826 2028 -4579 515 268 77 5 chr15 12168817 12169049 -73526705 + L1ME LINE L1 2411 2624 -3802 945 270 105 0 chr15 12169065 12169435 -73526319 + L1ME LINE L1 2698 3106 -3320 31 0 0 0 chr15 12169552 12169583 -73526171 + AT_rich Low_complexity Low_complexity 1 31 0 1910 150 3 0 chr15 12170243 12170530 -73525224 + AluSx SINE Alu 1 288 -24 34 24 0 0 chr15 12170546 12170587 -73525167 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr15 12171582 12171603 -73524151 + AT_rich Low_complexity Low_complexity 1 21 0 1523 167 67 90 chr15 12171716 12172148 -73523606 - LTR8A LTR ERV1 -305 422 1 950 210 23 78 chr15 12172148 12172457 -73523297 + L1ME3A LINE L1 5879 6170 0 1985 203 96 84 chr15 12172570 12173288 -73522466 - LTR8A LTR ERV1 0 727 1 357 267 159 20 chr15 12173428 12173623 -73522131 - HAL1 LINE L1 -1158 1349 1128 734 237 155 0 chr15 12174771 12174990 -73520764 + MIR SINE MIR 5 257 -5 433 289 54 89 chr15 12175449 12175819 -73519935 + HAL1 LINE L1 817 1173 -1334 1659 280 63 20 chr15 12175933 12176944 -73518810 + L1ME LINE L1 4842 5894 -556 1768 163 10 20 chr15 12177224 12177519 -73518235 - AluJo SINE Alu -19 293 2 524 273 136 38 chr15 12177619 12177883 -73517871 - L2 LINE L2 -94 3219 2930 1994 91 0 25 chr15 12178121 12178396 -73517358 - AluY SINE Alu -10 301 34 481 236 87 0 chr15 12178434 12178561 -73517193 + MIR SINE MIR 16 153 -55 21 0 0 0 chr15 12178892 12178913 -73516841 + AT_rich Low_complexity Low_complexity 1 21 0 186 167 0 0 chr15 12179126 12179162 -73516592 + CT-rich Low_complexity Low_complexity 1 36 0 404 331 31 0 chr15 12179184 12179311 -73516443 + L2 LINE L2 3180 3310 -3 1897 115 33 63 chr15 12179545 12179911 -73515843 - THE1A LTR MaLR 0 355 1 25 0 0 0 chr15 12180192 12180217 -73515537 + AT_rich Low_complexity Low_complexity 1 25 0 790 310 67 28 chr15 12182328 12182715 -73513039 - LTR16C LTR ERVL 0 491 90 26 50 0 0 chr15 12182943 12182983 -73512771 + AT_rich Low_complexity Low_complexity 1 40 0 252 307 16 55 chr15 12183411 12183538 -73512216 + MIR SINE MIR 134 255 -7 2883 77 5 0 chr15 12184445 12184821 -73510933 + L1PA11 LINE L1 5530 5907 -267 11658 114 34 52 chr15 12185170 12188161 -73507593 - L1PA11 LINE L1 0 6174 3221 8768 31 1 0 chr15 12188161 12189753 -73506001 + L1PA3 LINE L1 4337 5930 -225 709 281 109 13 chr15 12189857 12190470 -73505284 - L1M4 LINE L1 -2655 3491 2820 1598 175 35 0 chr15 12190545 12190859 -73504895 - L1MB2 LINE L1 -25 5970 5646 762 163 16 0 chr15 12190860 12190989 -73504765 - AluJb SINE Alu -181 131 1 10948 218 39 29 chr15 12190996 12192960 -73502794 - L1MB2 LINE L1 -341 5651 3708 2030 132 10 10 chr15 12192960 12193271 -73502483 - AluSx SINE Alu -1 311 1 10948 218 39 29 chr15 12193271 12195255 -73500499 - L1MB2 LINE L1 -2284 3708 1642 1555 195 26 20 chr15 12195255 12195557 -73500197 - AluJo SINE Alu -8 304 1 10948 218 39 29 chr15 12195557 12195583 -73500171 - L1MB2 LINE L1 -4350 1642 1618 14575 38 2 1 chr15 12195822 12198357 -73497397 - L1PA4 LINE L1 -5 6150 3614 20056 73 2 0 chr15 12198362 12200962 -73494792 - L1PA4 LINE L1 -3535 2611 7 7654 146 26 10 chr15 12200965 12202454 -73493300 - L1PBa LINE L1 -4098 2765 1093 2638 228 89 21 chr15 12202458 12203308 -73492446 - L1PBa LINE L1 -5818 1045 138 2074 259 39 34 chr15 12203315 12203998 -73491756 - L1MB2 LINE L1 -4796 1095 417 1385 316 64 58 chr15 12204015 12204905 -73490849 - L1M3a LINE L1 -5226 729 2 * 2454 252 26 19 chr15 12204903 12205687 -73490067 - L1M4c LINE L1 -4522 1379 400 350 293 18 61 chr15 12205845 12206009 -73489745 - L1M4c LINE L1 -5487 404 248 326 317 86 62 chr15 12206118 12206408 -73489346 - L1MB2 LINE L1 -5503 388 92 934 287 58 37 chr15 12206502 12207375 -73488379 - L1MEc LINE L1 -3316 2899 2041 370 241 70 70 chr15 12207548 12207748 -73488006 - L1MEc LINE L1 -4443 1772 1574 630 277 89 29 chr15 12208065 12208564 -73487190 - L1MEc LINE L1 -4669 1637 1112 547 226 19 45 chr15 12208810 12208965 -73486789 + L2 LINE L2 3163 3313 0 315 0 0 0 chr15 12209767 12209802 -73485952 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr15 12210029 12210051 -73485703 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr15 12210652 12210679 -73485075 + AT_rich Low_complexity Low_complexity 1 27 0 25 83 0 0 chr15 12211211 12211271 -73484483 + AT_rich Low_complexity Low_complexity 1 60 0 6129 181 36 15 chr15 12213251 12215076 -73480678 + L1MC1 LINE L1 4463 6328 -5 21 0 0 0 chr15 12217276 12217297 -73478457 + AT_rich Low_complexity Low_complexity 1 21 0 27495 35 4 0 chr15 12219691 12223606 -73472148 - L1PA4 LINE L1 -214 5941 2018 208 275 55 22 chr15 12223756 12223847 -73471907 + L2 LINE L2 3220 3313 0 3472 136 45 7 chr15 12223948 12224528 -73471226 + MER7C DNA MER2_type 1 602 0 242 226 19 0 chr15 12224540 12224593 -73471161 + (CATA)n Simple_repeat Simple_repeat 1 54 0 347 60 20 0 chr15 12224892 12224942 -73470812 + (TCCA)n Simple_repeat Simple_repeat 2 52 0 807 221 0 0 chr15 12225454 12225612 -73470142 - FRAM SINE Alu -18 158 1 6631 65 8 2 chr15 12225680 12226577 -73469177 + L1PA7 LINE L1 5264 6165 0 900 203 145 0 chr15 12226580 12226787 -73468967 - MLT1D LTR MaLR -124 381 145 248 253 96 82 chr15 12227829 12227975 -73467779 + MIR3 SINE MIR 51 198 -10 196 383 0 0 chr15 12228421 12228481 -73467273 + L2 LINE L2 3252 3311 -2 2055 57 57 37 chr15 12229732 12230029 -73465725 + AluY SINE Alu 1 303 -8 207 0 0 0 chr15 12230029 12230052 -73465702 + (CA)n Simple_repeat Simple_repeat 2 24 0 285 295 16 66 chr15 12230969 12231091 -73464663 - L2 LINE L2 0 3272 3157 246 246 58 0 chr15 12231951 12232020 -73463734 - L2 LINE L2 -1082 2232 2160 327 253 89 0 chr15 12232041 12232120 -73463634 - MER20 DNA MER1_type -110 109 24 1120 88 0 0 chr15 12232120 12232268 -73463486 + AluSp/q SINE Alu 162 309 -4 228 233 0 0 chr15 12232295 12232338 -73463416 - LTR33 LTR ERVL -153 368 326 7251 40 8 0 chr15 12232342 12233347 -73462407 + L1PA7 LINE L1 5135 6146 -8 21 0 0 0 chr15 12234470 12234491 -73461263 + AT_rich Low_complexity Low_complexity 1 21 0 1779 214 92 83 chr15 12235257 12235536 -73460218 + L1MC5 LINE L1 7025 7300 -661 883 179 40 30 chr15 12235536 12235737 -73460017 + MER3 DNA MER1_type 3 205 -4 1779 214 92 83 chr15 12235737 12236349 -73459405 + L1MC5 LINE L1 7300 7924 -37 302 212 153 17 chr15 12236452 12236570 -73459184 + L1MB8 LINE L1 93 226 -6633 2709 215 75 68 chr15 12236919 12237701 -73458053 + L1MB8 LINE L1 5511 6312 -677 2358 104 0 7 chr15 12237701 12238009 -73457745 + AluSg SINE Alu 5 310 0 2709 215 75 68 chr15 12238009 12238685 -73457069 + L1MB8 LINE L1 6312 6982 -7 1437 225 70 100 chr15 12238767 12239326 -73456428 - MLT1E LTR MaLR 0 593 1 896 235 20 20 chr15 12239515 12239719 -73456035 - MIR SINE MIR 0 262 59 1873 139 65 46 chr15 12240470 12240518 -73455236 - THE1C LTR MaLR 0 375 329 1874 138 76 17 chr15 12240518 12240872 -73454882 - THE1C LTR MaLR 0 375 1 1873 139 65 46 chr15 12240872 12241191 -73454563 - THE1C LTR MaLR -46 329 1 6952 118 10 27 chr15 12241191 12242270 -73453484 - THE1C-int LTR MaLR 0 1580 520 15523 61 1 1 chr15 12242370 12244316 -73451438 - L1P LINE L1 -4193 1953 7 468 349 92 56 chr15 12244870 12245602 -73450152 - L2 LINE L2 -3 3269 2530 1257 226 173 119 chr15 12245618 12246132 -73449622 - MER39 LTR ERV1 0 707 1 201 345 14 36 chr15 12246141 12246280 -73449474 - L2 LINE L2 -811 2503 2368 518 276 174 5 chr15 12246654 12246850 -73448904 + MIR SINE MIR 20 248 -14 709 264 48 60 chr15 12246908 12247158 -73448596 + MIR SINE MIR 2 248 -14 199 314 0 58 chr15 12247384 12247470 -73448284 - L3 LINE CR1 -314 1263 1183 27 29 0 0 chr15 12248991 12249025 -73446729 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr15 12249650 12249671 -73446083 + AT_rich Low_complexity Low_complexity 1 21 0 1429 285 168 12 chr15 12249740 12250200 -73445554 + HAL1 LINE L1 11 582 -1925 423 0 0 0 chr15 12250200 12250247 -73445507 + (CA)n Simple_repeat Simple_repeat 2 48 0 1429 285 168 12 chr15 12250247 12250368 -73445386 + HAL1 LINE L1 582 683 -1824 276 269 39 29 chr15 12250401 12250505 -73445249 + MER21B LTR ERV1 1 105 -758 * 3769 221 55 9 chr15 12250504 12251301 -73444453 + MER21B LTR ERV1 19 852 -11 3601 255 79 44 chr15 12251307 12252877 -73442877 + HAL1 LINE L1 740 2364 -143 261 396 0 0 chr15 12253587 12253746 -73442008 + (TGG)n Simple_repeat Simple_repeat 1 159 0 395 278 93 0 chr15 12255064 12255215 -73440539 + L1ME4a LINE L1 5594 5758 -363 268 226 83 61 chr15 12255314 12255495 -73440259 + L1ME4a LINE L1 5807 5991 -130 7728 138 17 10 chr15 12255699 12255839 -73439915 - L1MA2 LINE L1 -103 6201 6063 1561 199 20 13 chr15 12255839 12256140 -73439614 - AluJb SINE Alu -9 303 1 7728 138 17 10 chr15 12256140 12258263 -73437491 - L1MA2 LINE L1 -241 6063 3918 474 336 154 40 chr15 12258681 12259407 -73436347 - L2 LINE L2 -514 2800 1992 348 350 10 0 chr15 12259647 12259747 -73436007 + L2 LINE L2 3197 3297 -16 1639 298 95 81 chr15 12259848 12261729 -73434025 - L2 LINE L2 -106 3207 1238 182 329 47 24 chr15 12262724 12262809 -73432945 + MIR3 SINE MIR 85 171 -37 27 108 0 0 chr15 12262984 12263095 -73432659 + AT_rich Low_complexity Low_complexity 1 111 0 6042 166 37 5 chr15 12264077 12265489 -73430265 + L1MC1 LINE L1 4873 6322 -11 319 347 39 20 chr15 12265493 12266055 -73429699 - L1MEd LINE L1 -3386 2743 2171 258 273 86 65 chr15 12266839 12267257 -73428497 - L1MEd LINE L1 -4882 1237 811 1224 93 82 0 chr15 12268374 12268556 -73427198 + MER30 DNA MER1_type 1 197 -33 339 25 0 0 chr15 12271388 12271428 -73424326 + (CA)n Simple_repeat Simple_repeat 2 41 0 5606 200 24 50 chr15 12271790 12272834 -73422920 + L1 LINE L1 2146 3216 -2930 224 30 30 0 chr15 12272834 12272867 -73422887 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1930 114 7 4 chr15 12272873 12273145 -73422609 - AluSg SINE Alu -37 273 1 5606 200 24 50 chr15 12273145 12273635 -73422119 + L1 LINE L1 3221 3647 -2499 548 358 83 26 chr15 12274013 12274432 -73421322 - L2 LINE L2 -458 2856 2414 6019 167 25 17 chr15 12274750 12276961 -73418793 - L1MA9 LINE L1 -7 6305 4078 263 188 43 0 chr15 12277923 12277992 -73417762 + (TA)n Simple_repeat Simple_repeat 2 73 0 339 96 0 0 chr15 12277996 12278048 -73417706 + (TG)n Simple_repeat Simple_repeat 2 53 0 284 86 0 57 chr15 12278111 12278181 -73417573 + (TA)n Simple_repeat Simple_repeat 2 67 0 183 162 0 0 chr15 12279337 12279374 -73416380 + A-rich Low_complexity Low_complexity 1 37 0 627 214 10 112 chr15 12280514 12280720 -73415034 - MARNA DNA Mariner -65 521 337 363 270 100 87 chr15 12280911 12281211 -73414543 - L3 LINE CR1 -173 1404 1101 1051 329 29 27 chr15 12281481 12281964 -73413790 - L3 LINE CR1 -566 1011 528 207 0 0 0 chr15 12283287 12283310 -73412444 + (CAAAAA)n Simple_repeat Simple_repeat 1 23 0 212 349 46 37 chr15 12283705 12283814 -73411940 - MIR SINE MIR -79 129 20 1297 79 0 0 chr15 12284125 12284289 -73411465 - AluY SINE Alu -18 293 130 442 242 0 76 chr15 12284289 12284446 -73411308 + MER5B DNA MER1_type 34 178 0 1222 135 17 59 chr15 12285134 12285371 -73410383 + L1PA15 LINE L1 5938 6164 -1 677 265 110 0 chr15 12285827 12286027 -73409727 - MER58A DNA MER1_type -2 222 1 757 219 11 38 chr15 12286035 12286218 -73409536 - MER5B DNA MER1_type 0 178 1 1790 190 0 3 chr15 12287092 12287403 -73408351 - AluJb SINE Alu 0 312 3 1021 179 26 0 chr15 12287534 12287729 -73408025 + MER57A LTR ERV1 3 202 -201 1896 147 60 9 chr15 12287745 12288079 -73407675 + MER61C LTR ERV1 84 434 0 595 213 14 118 chr15 12288079 12288312 -73407442 + MER61C-int LTR ERV1 2 470 -5032 311 264 0 23 chr15 12288429 12288516 -73407238 + MER61C-int LTR ERV1 272 356 -4861 2371 57 0 0 chr15 12288517 12288850 -73406904 + AluY SINE Alu 2 334 0 382 125 0 0 chr15 12288867 12288923 -73406831 + Alu SINE Alu 239 294 -8 430 141 141 58 chr15 12288923 12289044 -73406710 + MER61C-int LTR ERV1 347 477 -4740 987 117 113 27 chr15 12289072 12289308 -73406446 + MER61C-int LTR ERV1 695 4128 -1089 * 3018 165 68 26 chr15 12289306 12290576 -73405178 + MER61C-int LTR ERV1 499 4918 -299 705 130 0 0 chr15 12290587 12290695 -73405059 - AluSg/x SINE Alu -10 300 193 2590 153 7 15 chr15 12290695 12291174 -73404580 + MER61C-int LTR ERV1 1213 2010 -3576 1942 153 32 3 chr15 12291161 12291508 -73404246 + MER61C-int LTR ERV1 4041 4397 -3140 * 7365 126 23 27 chr15 12291500 12292972 -73402782 + MER61C-int LTR ERV1 2831 5217 0 560 189 18 0 chr15 12292987 12293098 -73402656 + MER61C LTR ERV1 84 196 -238 6993 59 1 5 chr15 12293098 12294149 -73401605 + L1PA7 LINE L1 5102 6149 -5 4230 177 35 25 chr15 12294224 12295394 -73400360 + L1MB8 LINE L1 4999 6176 -2 566 289 81 60 chr15 12295587 12296033 -73399721 + LTR68 LTR ERV1 12 466 -274 3958 141 74 16 chr15 12297763 12298465 -73397289 + Tigger2 DNA MER2_type 2 744 -1974 1648 171 43 0 chr15 12298551 12298850 -73396904 - AluJo SINE Alu 0 312 1 1575 128 12 0 chr15 12298850 12299093 -73396661 + Tigger2 DNA MER2_type 2473 2718 0 2203 72 0 4 chr15 12299202 12299480 -73396274 - AluY SINE Alu -14 297 21 394 235 12 0 chr15 12300835 12300916 -73394838 + L1MC5 LINE L1 6712 6793 -1168 599 226 5 115 chr15 12300920 12301137 -73394617 + L1ME3A LINE L1 5698 5890 -280 21 0 0 0 chr15 12301184 12301205 -73394549 + AT_rich Low_complexity Low_complexity 1 21 0 326 319 60 42 chr15 12303671 12303837 -73391917 + MIR SINE MIR 20 188 -74 742 251 172 52 chr15 12303847 12304064 -73391690 + L2 LINE L2 2453 2642 -672 2426 66 0 0 chr15 12304064 12304367 -73391387 + AluY SINE Alu 4 306 -5 742 251 172 52 chr15 12304367 12304555 -73391199 + L2 LINE L2 2642 2907 -407 218 225 0 0 chr15 12304537 12304577 -73391177 + L2 LINE L2 3008 3047 -266 * 188 277 21 0 chr15 12304614 12304661 -73391093 + L2 LINE L2 3216 3263 -9 * 219 284 74 12 chr15 12304659 12304740 -73391014 - MIR SINE MIR -152 110 25 234 0 0 0 chr15 12304818 12304844 -73390910 + (TC)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr15 12306208 12306231 -73389523 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr15 12306355 12306391 -73389363 + AT_rich Low_complexity Low_complexity 1 36 0 265 279 77 87 chr15 12307773 12308085 -73387669 + L3 LINE CR1 631 939 -638 189 94 0 0 chr15 12308792 12308824 -73386930 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 2338 76 0 0 chr15 12308828 12309118 -73386636 - AluSg SINE Alu -20 290 1 1668 144 58 17 chr15 12309295 12309587 -73386167 - AluSx SINE Alu -8 304 1 1358 147 5 23 chr15 12309712 12309930 -73385824 - AluSx SINE Alu -98 214 1 674 281 75 20 chr15 12309947 12310146 -73385608 + MIR SINE MIR 43 252 -10 293 181 0 12 chr15 12310170 12310239 -73385515 + (CTA)n Simple_repeat Simple_repeat 2 71 -12 1141 186 115 50 chr15 12310239 12310562 -73385192 + MER2 DNA MER2_type 1 344 0 293 181 0 12 chr15 12310562 12310575 -73385179 + (CTA)n Simple_repeat Simple_repeat 71 83 0 311 256 78 32 chr15 12311097 12311273 -73384481 - L1MA10 LINE L1 -1 6333 5990 1420 182 14 120 chr15 12311428 12311846 -73383908 - MLT1A2 LTR MaLR 0 374 1 257 324 116 31 chr15 12311848 12312107 -73383647 - L2 LINE L2 -997 2317 2037 309 376 108 9 chr15 12312167 12312380 -73383374 - MIR SINE MIR -9 253 20 212 250 75 38 chr15 12312930 12313010 -73382744 - MIR SINE MIR -49 213 131 1841 107 44 7 chr15 12313402 12313705 -73382049 - AluSg SINE Alu 0 313 1 1707 263 82 26 chr15 12314317 12315194 -73380560 + L2 LINE L2 2384 3311 -2 755 294 119 36 chr15 12315519 12316097 -73379657 + L1ME4a LINE L1 5495 6120 -1 198 304 43 75 chr15 12316180 12316341 -73379413 - L2 LINE L2 0 3313 3158 2234 102 3 0 chr15 12316346 12316640 -73379114 + AluSg SINE Alu 1 295 -15 645 228 34 7 chr15 12318387 12318536 -73377218 + AluJb SINE Alu 137 289 -23 27 0 0 0 chr15 12318536 12318563 -73377191 + AT_rich Low_complexity Low_complexity 1 27 0 5444 144 135 19 chr15 12318949 12319617 -73376137 - Tigger3b DNA MER2_type -1811 1217 628 2206 116 0 3 chr15 12319617 12319928 -73375826 + AluSx SINE Alu 3 312 0 5444 144 135 19 chr15 12319928 12320350 -73375404 - Tigger3b DNA MER2_type -2400 628 1 463 291 55 22 chr15 12320488 12320670 -73375084 - MIR SINE MIR -28 234 47 369 313 125 90 chr15 12321013 12321118 -73374636 - L2 LINE L2 -356 2958 2858 1972 129 0 7 chr15 12321118 12321439 -73374315 + AluSq SINE Alu 1 319 0 369 313 125 90 chr15 12321439 12321587 -73374167 - L2 LINE L2 -456 2858 2717 601 98 0 0 chr15 12321587 12321679 -73374075 - L1MB3 LINE L1 -12 6171 6080 369 313 125 90 chr15 12321679 12322261 -73373493 - L2 LINE L2 -597 2717 2062 2161 83 0 4 chr15 12322261 12322537 -73373217 + AluSx SINE Alu 14 288 -24 369 313 125 90 chr15 12322537 12322904 -73372850 - L2 LINE L2 -1252 2062 1710 326 279 115 36 chr15 12323313 12323478 -73372276 + MIR SINE MIR 36 213 -49 537 188 0 0 chr15 12324347 12324448 -73371306 + FAM SINE Alu 83 183 -2 1008 192 211 11 chr15 12324484 12324848 -73370906 - LTR33A LTR ERVL 0 523 87 253 226 206 10 chr15 12325098 12325200 -73370554 - L2 LINE L2 -6 3307 3186 755 258 131 7 chr15 12325958 12326241 -73369513 + L1MC4 LINE L1 5584 5901 -1907 405 0 0 0 chr15 12326246 12326291 -73369463 + (TG)n Simple_repeat Simple_repeat 1 45 0 218 317 37 24 chr15 12328202 12328284 -73367470 - L2 LINE L2 -86 3186 3104 28 0 0 0 chr15 12328390 12328418 -73367336 + AT_rich Low_complexity Low_complexity 1 28 0 335 326 11 0 chr15 12328523 12328612 -73367142 + MIR3 SINE MIR 67 156 -52 444 67 0 0 chr15 12330678 12330738 -73365016 + (CA)n Simple_repeat Simple_repeat 1 60 0 2657 109 5 29 chr15 12331435 12331846 -73363908 - THE1C-int LTR MaLR -1177 403 3 1581 184 73 20 chr15 12331850 12332204 -73363550 - THE1C LTR MaLR -2 373 1 201 147 0 0 chr15 12333720 12333754 -73362000 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 1699 177 101 22 chr15 12334308 12334675 -73361079 - MSTD LTR MaLR 0 396 1 264 77 26 0 chr15 12335026 12335065 -73360689 - MLT2B2 LTR ERVL 0 515 476 369 0 0 0 chr15 12335068 12335109 -73360645 + (CA)n Simple_repeat Simple_repeat 2 42 0 227 235 0 7 chr15 12335123 12335259 -73360495 + (TA)n Simple_repeat Simple_repeat 1 135 0 300 309 21 0 chr15 12335259 12335356 -73360398 + L1MC4 LINE L1 6611 6709 -1333 230 163 41 0 chr15 12335364 12335413 -73360341 + L1MC4 LINE L1 6653 6703 -1339 1932 175 112 25 chr15 12335443 12335856 -73359898 - MLT2B1 LTR ERVL -13 541 43 754 255 22 81 chr15 12336126 12336397 -73359357 - MIR SINE MIR -1 261 7 567 241 87 51 chr15 12337473 12337726 -73358028 + MIR SINE MIR 1 262 0 2030 273 83 23 chr15 12338286 12338616 -73357138 + L1ME4a LINE L1 3932 4241 -1905 1965 155 28 36 chr15 12338616 12339009 -73356745 + MLT1B LTR MaLR 1 390 0 2030 273 83 23 chr15 12339009 12339716 -73356038 + L1ME4a LINE L1 4241 5147 -999 427 240 47 18 chr15 12339733 12339792 -73355962 + L1ME4a LINE L1 5219 5275 -895 2015 119 7 7 chr15 12339792 12340087 -73355667 + AluSq SINE Alu 1 295 -18 216 0 0 0 chr15 12340087 12340111 -73355643 + (TA)n Simple_repeat Simple_repeat 2 25 0 427 240 47 18 chr15 12340111 12340296 -73355458 + L1ME4a LINE L1 5274 5469 -701 271 299 61 100 chr15 12340303 12340812 -73354942 + L2 LINE L2 2825 3313 0 683 227 0 0 chr15 12342348 12342480 -73353274 + FLAM_A SINE Alu 2 133 0 1712 100 128 0 chr15 12344288 12344561 -73351193 - AluSx SINE Alu 0 305 1 281 190 20 40 chr15 12345746 12345846 -73349908 + L1MC5 LINE L1 7828 7925 -36 202 226 0 19 chr15 12345846 12345899 -73349855 + A-rich Low_complexity Low_complexity 4 55 0 249 167 0 0 chr15 12346425 12346479 -73349275 + (TA)n Simple_repeat Simple_repeat 1 54 0 770 135 71 0 chr15 12347271 12347412 -73348342 - MIR SINE MIR -65 197 47 200 258 93 52 chr15 12347443 12347540 -73348214 + L2 LINE L2 2167 2267 -1047 200 325 26 39 chr15 12347640 12347794 -73347960 + L2 LINE L2 2702 2853 -461 204 305 171 0 chr15 12348065 12348170 -73347584 + L2 LINE L2 3191 3313 0 21 0 0 0 chr15 12350824 12350845 -73344909 + AT_rich Low_complexity Low_complexity 1 21 0 287 203 13 0 chr15 12351363 12351442 -73344312 + (TA)n Simple_repeat Simple_repeat 1 80 0 1556 205 10 0 chr15 12353454 12353752 -73342002 + AluJo SINE Alu 1 301 -11 484 207 207 7 chr15 12354552 12354697 -73341057 + MER5A DNA MER1_type 9 182 -7 712 282 46 18 chr15 12356304 12356630 -73339124 + L1ME4a LINE L1 5562 5896 -225 21 36 0 0 chr15 12356764 12356792 -73338962 + AT_rich Low_complexity Low_complexity 1 28 0 180 290 43 43 chr15 12358592 12358661 -73337093 + L2 LINE L2 3225 3293 -20 1329 223 18 7 chr15 12358833 12358961 -73336793 + AluJo SINE Alu 1 126 -186 2482 75 0 0 chr15 12358961 12359269 -73336485 + AluY SINE Alu 1 308 -3 1329 223 18 7 chr15 12359269 12359418 -73336336 + AluJo SINE Alu 126 281 -31 564 289 147 5 chr15 12359877 12360081 -73335673 - MIR SINE MIR -2 260 28 21 82 0 0 chr15 12361429 12361478 -73334276 + AT_rich Low_complexity Low_complexity 1 49 0 291 270 67 22 chr15 12361623 12361712 -73334042 - L2 LINE L2 -8 3264 3172 368 322 75 7 chr15 12362375 12362521 -73333233 - MIR SINE MIR -57 205 50 212 175 0 0 chr15 12363742 12363782 -73331972 + A-rich Low_complexity Low_complexity 1 40 0 189 74 0 0 chr15 12366017 12366044 -73329710 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 318 316 171 5 chr15 12366321 12366514 -73329240 - L1ME4a LINE L1 -135 5986 5762 548 293 103 18 chr15 12366520 12366846 -73328908 - L1ME4a LINE L1 -436 5685 5309 1062 165 127 24 chr15 12367571 12367862 -73327892 - MER5C DNA MER1_type 0 324 4 561 216 181 21 chr15 12368071 12368274 -73327480 + MIR SINE MIR 33 262 0 209 321 71 27 chr15 12368514 12368698 -73327056 - L2 LINE L2 -11 3302 3111 1190 173 0 10 chr15 12369159 12369367 -73326387 + AluJb SINE Alu 83 288 -24 216 267 0 0 chr15 12370799 12370844 -73324910 - MIR SINE MIR -61 147 103 338 196 110 69 chr15 12372157 12372330 -73323424 + MER112 DNA MER1_type 33 212 -48 1814 125 194 8 chr15 12372609 12372970 -73322784 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr15 12373366 12373388 -73322366 + AT_rich Low_complexity Low_complexity 1 22 0 1959 122 17 10 chr15 12375000 12375288 -73320466 - AluSx SINE Alu -22 290 1 251 338 88 40 chr15 12375322 12375470 -73320284 - L2 LINE L2 0 3272 3118 287 366 59 30 chr15 12375850 12376222 -73319532 - L2 LINE L2 -656 2658 2276 249 302 0 0 chr15 12376271 12376324 -73319430 + polypurine Low_complexity Low_complexity 4 56 0 2100 126 0 10 chr15 12376340 12376642 -73319112 + AluSq SINE Alu 1 299 -14 59 38 0 0 chr15 12377151 12377231 -73318523 + AT_rich Low_complexity Low_complexity 1 80 0 718 259 72 56 chr15 12377479 12377614 -73318140 + HAL1 LINE L1 791 922 -1585 2356 90 3 0 chr15 12377614 12377924 -73317830 + AluSp SINE Alu 1 311 -2 718 259 72 56 chr15 12377924 12378290 -73317464 + HAL1 LINE L1 922 1300 -1207 431 306 53 34 chr15 12378373 12378579 -73317175 - MLT1K LTR MaLR -236 352 143 878 267 120 6 chr15 12378658 12379017 -73316737 + HAL1 LINE L1 1385 1784 -723 31 26 0 0 chr15 12380084 12380122 -73315632 + AT_rich Low_complexity Low_complexity 1 38 0 829 285 64 27 chr15 12381164 12381494 -73314260 + L2 LINE L2 2967 3308 -5 292 172 62 0 chr15 12382807 12382871 -73312883 + L1ME LINE L1 5773 5840 -281 226 319 90 0 chr15 12382941 12383085 -73312669 + MER103 DNA DNA 9 165 -1 23 0 0 0 chr15 12385460 12385483 -73310271 + AT_rich Low_complexity Low_complexity 1 23 0 276 312 130 47 chr15 12385596 12385811 -73309943 + MIR SINE MIR 30 262 0 28 29 0 0 chr15 12386323 12386358 -73309396 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr15 12386368 12386393 -73309361 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr15 12386403 12386425 -73309329 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr15 12386436 12386457 -73309297 + (TA)n Simple_repeat Simple_repeat 1 21 0 418 107 13 13 chr15 12386719 12386794 -73308960 + (TA)n Simple_repeat Simple_repeat 2 76 0 1534 76 5 0 chr15 12387792 12388002 -73307752 + L1PA7 LINE L1 5941 6151 -3 432 303 74 0 chr15 12389223 12389385 -73306369 + MER5B DNA MER1_type 2 175 -3 737 277 214 21 chr15 12390299 12391026 -73304728 - L2 LINE L2 -5 3308 2450 323 246 0 0 chr15 12391030 12391095 -73304659 + MIR SINE MIR 181 245 -17 4187 112 19 6 chr15 12391282 12391918 -73303836 - LTR9B LTR ERV1 0 644 1 1091 255 105 21 chr15 12393170 12393550 -73302204 - LTR16B LTR ERVL -2 462 51 426 292 23 38 chr15 12393673 12393962 -73301792 - MERVL LTR ERVL -204 5281 4557 693 333 35 23 chr15 12394082 12394478 -73301276 - ERVL LTR ERVL -895 4869 4469 404 251 49 77 chr15 12394501 12394684 -73301070 - LTR16B LTR ERVL -284 180 3 723 214 98 6 chr15 12395654 12395827 -73299927 - MIR SINE MIR -69 193 5 281 233 159 92 chr15 12396082 12396245 -73299509 - MER102a DNA MER1_type -9 321 148 1973 156 0 7 chr15 12396245 12396547 -73299207 + AluJo SINE Alu 1 300 -12 310 278 220 16 chr15 12396813 12397004 -73298750 + MIR SINE MIR 2 231 -31 323 192 19 115 chr15 12397004 12397108 -73298646 + L1MEc LINE L1 2052 2145 -4251 1971 137 30 3 chr15 12397112 12397411 -73298343 + AluSx SINE Alu 1 307 -5 1053 205 87 17 chr15 12397445 12397801 -73297953 + L1MEc LINE L1 2103 2483 -3913 339 274 52 22 chr15 12397917 12398052 -73297702 - L1MC4a LINE L1 -1871 5937 5799 443 326 10 16 chr15 12398710 12398897 -73296857 - MIR SINE MIR -51 211 29 228 208 0 21 chr15 12399760 12399808 -73295946 + MLT1I LTR MaLR 324 370 -39 370 358 49 57 chr15 12400125 12400283 -73295471 + L2 LINE L2 3029 3186 -86 822 305 99 25 chr15 12400283 12400768 -73294986 - LTR33 LTR ERVL 0 521 1 370 358 49 57 chr15 12400768 12400855 -73294899 + L2 LINE L2 3186 3272 0 1558 178 22 29 chr15 12401449 12401763 -73293991 + AluJo SINE Alu 1 312 0 26 0 0 0 chr15 12403186 12403212 -73292542 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr15 12404884 12404905 -73290849 + AT_rich Low_complexity Low_complexity 1 21 0 562 238 42 36 chr15 12404970 12405138 -73290616 + MIR SINE MIR 84 252 -10 2352 152 35 62 chr15 12405247 12405760 -73289994 + MLT1D LTR MaLR 7 505 0 220 242 16 0 chr15 12405776 12405838 -73289916 + (TTAA)n Simple_repeat Simple_repeat 2 64 0 264 295 161 18 chr15 12406191 12406303 -73289451 + MIR SINE MIR 20 147 -115 1920 187 15 47 chr15 12407549 12407950 -73287804 - MLT1B LTR MaLR 0 390 3 2248 80 43 13 chr15 12408013 12408314 -73287440 - AluY SINE Alu -1 310 1 5311 188 22 27 chr15 12412239 12412950 -73282804 - L1MB1 LINE L1 -3 6165 5452 369 0 0 0 chr15 12412950 12412991 -73282763 + (TG)n Simple_repeat Simple_repeat 2 42 0 5311 188 22 27 chr15 12412991 12414286 -73281468 - L1MB1 LINE L1 -716 5452 4166 403 256 113 0 chr15 12414287 12414420 -73281334 - MIR SINE MIR -48 214 67 1841 195 39 68 chr15 12414572 12415090 -73280664 + MLT1D LTR MaLR 1 503 -2 24 77 0 0 chr15 12415300 12415352 -73280402 + AT_rich Low_complexity Low_complexity 1 52 0 771 285 14 14 chr15 12415565 12415786 -73279968 - MIR SINE MIR 0 262 42 1784 176 17 36 chr15 12416593 12416633 -73279121 + L1PB4 LINE L1 5737 5776 -380 396 0 0 0 chr15 12416633 12416677 -73279077 + (TG)n Simple_repeat Simple_repeat 2 45 0 1784 176 17 36 chr15 12416677 12416930 -73278824 + L1PB4 LINE L1 5776 6031 -125 2289 109 0 0 chr15 12416930 12417232 -73278522 + AluSx SINE Alu 1 302 -10 1784 176 17 36 chr15 12417232 12417340 -73278414 + L1PB4 LINE L1 6031 6139 -17 260 274 0 0 chr15 12418050 12418112 -73277642 - L2 LINE L2 0 3313 3252 242 362 43 35 chr15 12418167 12418283 -73277471 + MIR SINE MIR 17 133 -75 212 306 0 42 chr15 12418927 12418999 -73276755 + L2 LINE L2 3200 3268 -4 335 311 156 0 chr15 12419045 12419212 -73276542 + MIR SINE MIR 65 257 -5 226 268 110 24 chr15 12419305 12419387 -73276367 + MIR3 SINE MIR 115 203 -5 21 0 0 0 chr15 12419967 12419988 -73275766 + AT_rich Low_complexity Low_complexity 1 21 0 510 121 48 0 chr15 12420556 12420639 -73275115 + L1MA2 LINE L1 6218 6304 0 2185 131 0 0 chr15 12421423 12421729 -73274025 + AluSq SINE Alu 1 306 -7 183 100 0 0 chr15 12421771 12421801 -73273953 + (TG)n Simple_repeat Simple_repeat 2 31 0 250 289 61 18 chr15 12422498 12422612 -73273142 + L1MC4 LINE L1 6614 6732 -1310 233 186 0 0 chr15 12423691 12423734 -73272020 + L2 LINE L2 3264 3306 -7 500 293 56 98 chr15 12423943 12424465 -73271289 - MLT1L LTR MaLR -7 608 5 327 288 152 44 chr15 12426460 12426894 -73268860 + L1ME LINE L1 5320 5800 -321 205 167 0 0 chr15 12428863 12428899 -73266855 + GA-rich Low_complexity Low_complexity 1 36 0 1920 157 3 0 chr15 12431591 12431885 -73263869 - AluSx SINE Alu -16 296 2 362 282 69 19 chr15 12432138 12432354 -73263400 - L1MDa LINE L1 -4516 1613 1387 264 290 48 65 chr15 12432507 12432800 -73262954 - L1MDa LINE L1 -4902 1217 930 1846 42 0 42 chr15 12432966 12433203 -73262551 - AluY SINE Alu -5 306 80 3767 170 42 0 chr15 12433537 12434227 -73261527 - L1PA16 LINE L1 -6 6160 5442 1544 84 55 8 chr15 12434271 12434509 -73261245 + LTR7 LTR ERV1 164 412 -38 273 326 73 45 chr15 12434526 12434704 -73261050 + MLT1J2 LTR MaLR 268 450 0 2360 123 8 35 chr15 12435528 12435902 -73259852 - THE1B LTR MaLR 0 364 1 28 48 0 0 chr15 12435968 12436010 -73259744 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr15 12436070 12436105 -73259649 + AT_rich Low_complexity Low_complexity 1 35 0 667 338 113 31 chr15 12436215 12436692 -73259062 - LTR33 LTR ERVL 0 521 6 22 35 0 0 chr15 12436766 12436795 -73258959 + AT_rich Low_complexity Low_complexity 1 29 0 186 385 43 56 chr15 12437318 12437549 -73258205 + L2 LINE L2 2816 3043 -229 204 286 54 0 chr15 12438216 12438272 -73257482 + L2 LINE L2 3210 3268 -4 21 0 0 0 chr15 12439194 12439215 -73256539 + AT_rich Low_complexity Low_complexity 1 21 0 1051 239 42 24 chr15 12439348 12439833 -73255921 - MLT1E LTR MaLR -8 585 1 3455 169 77 54 chr15 12440941 12441600 -73254154 - L1MB5 LINE L1 -17 6157 5476 261 83 0 0 chr15 12441600 12441636 -73254118 + (TG)n Simple_repeat Simple_repeat 1 36 0 3455 169 77 54 chr15 12441636 12441768 -73253986 - L1MB5 LINE L1 -698 5476 5348 432 224 61 7 chr15 12441805 12441952 -73253802 - LTR37A LTR ERV1 -59 367 213 2544 242 36 36 chr15 12442127 12442843 -73252911 - MER21B LTR ERV1 -11 852 137 1621 167 9 3 chr15 12443027 12443345 -73252409 + L1MA4 LINE L1 5970 6289 -11 261 246 33 0 chr15 12443347 12443408 -73252346 + L1MB1 LINE L1 5893 5955 -213 256 305 70 55 chr15 12443418 12443546 -73252208 + L2 LINE L2 3139 3268 -4 316 327 65 33 chr15 12443673 12443887 -73251867 + L2 LINE L2 1951 2171 -1143 3998 175 38 31 chr15 12444162 12445066 -73250688 + L1 LINE L1 3835 4744 -1402 2308 166 30 129 chr15 12445100 12445222 -73250532 - MLT2B2 LTR ERVL -5 510 378 1580 197 0 43 chr15 12445222 12445521 -73250233 + AluJo SINE Alu 1 286 -26 2308 166 30 129 chr15 12445521 12445536 -73250218 - MLT2B2 LTR ERVL -137 378 363 2219 104 3 0 chr15 12445536 12445849 -73249905 + AluSp SINE Alu 1 314 0 243 0 0 0 chr15 12445851 12445878 -73249876 + (TG)n Simple_repeat Simple_repeat 2 28 0 2308 166 30 129 chr15 12445878 12446299 -73249455 - MLT2B2 LTR ERVL -153 362 1 306 360 82 44 chr15 12446299 12446704 -73249050 + L2 LINE L2 2179 2598 -716 282 310 70 45 chr15 12448301 12448501 -73247253 - MIR3 SINE MIR -3 205 1 387 313 125 7 chr15 12448641 12448785 -73246969 - MIR3 SINE MIR -7 201 41 245 315 0 0 chr15 12451866 12451920 -73243834 - MER5A DNA MER1_type -61 128 75 2356 236 63 26 chr15 12451920 12452194 -73243560 - L1MEc LINE L1 -939 5276 5014 411 21 0 0 chr15 12452194 12452242 -73243512 + (TG)n Simple_repeat Simple_repeat 1 48 0 2356 236 63 26 chr15 12452242 12452780 -73242974 - L1MEc LINE L1 -1201 5014 4434 1610 265 44 13 chr15 12452812 12453340 -73242414 - L1ME1 LINE L1 -5 6161 5618 290 200 187 0 chr15 12453340 12453415 -73242339 - L1ME LINE L1 -501 5663 5575 * 1126 240 42 0 chr15 12453414 12453697 -73242057 - L1MEc LINE L1 -1769 4446 4152 * 4219 236 38 33 chr15 12453690 12455144 -73240610 - L1MEc LINE L1 -2458 3757 2297 472 250 23 0 chr15 12455284 12455412 -73240342 - L1MA10 LINE L1 -9 6325 6195 3465 281 79 40 chr15 12455447 12457570 -73238184 - L1MEc LINE L1 -4144 2252 46 213 39 0 0 chr15 12457591 12457617 -73238137 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1621 203 3 11 chr15 12457967 12458284 -73237470 + AluJo SINE Alu 1 315 0 21 36 0 0 chr15 12458352 12458380 -73237374 + AT_rich Low_complexity Low_complexity 1 28 0 1558 93 0 21 chr15 12458846 12459083 -73236671 + L1PA7 LINE L1 5920 6151 -3 5073 186 56 7 chr15 12459471 12460620 -73235134 + L1MD2 LINE L1 5142 6346 -13 341 379 28 0 chr15 12461064 12461209 -73234545 - LTR16A LTR ERVL -293 157 9 5293 72 62 8 chr15 12462542 12463302 -73232452 - L1PA13 LINE L1 -1 6162 5362 1294 173 27 96 chr15 12463302 12463603 -73232151 - AluJo SINE Alu -32 280 1 340 312 0 55 chr15 12463684 12463793 -73231961 + MIR SINE MIR 88 190 -72 1298 168 110 0 chr15 12464018 12464309 -73231445 + MER33 DNA MER1_type 1 323 -1 1034 171 0 0 chr15 12466592 12466756 -73228998 + AluSg/x SINE Alu 132 295 -15 1277 138 0 5 chr15 12467072 12467275 -73228479 - AluSx SINE Alu -7 305 104 672 125 0 0 chr15 12467364 12467460 -73228294 - AluSx SINE Alu -216 96 1 517 264 0 0 chr15 12467557 12467667 -73228087 - MIR SINE MIR -107 155 46 256 228 196 11 chr15 12468455 12468547 -73227207 + L2 LINE L2 3160 3268 -4 228 170 43 0 chr15 12470303 12470350 -73225404 + GA-rich Low_complexity Low_complexity 2 50 0 962 323 48 36 chr15 12471101 12471682 -73224072 - L2 LINE L2 -19 3294 2716 458 333 29 6 chr15 12472005 12472179 -73223575 + MIR SINE MIR 26 203 -59 223 297 0 16 chr15 12473575 12473639 -73222115 + GA-rich Low_complexity Low_complexity 4 66 0 285 308 130 16 chr15 12474784 12474969 -73220785 - L2 LINE L2 0 3313 3108 193 358 62 19 chr15 12475212 12475374 -73220380 + L2 LINE L2 2888 3056 -257 613 296 36 5 chr15 12475683 12475879 -73219875 - LTR16C LTR ERVL -52 439 238 1773 176 6 6 chr15 12477188 12477500 -73218254 + AluJo SINE Alu 1 312 0 986 246 40 12 chr15 12478020 12478272 -73217482 - L1ME1 LINE L1 -24 6142 5884 2029 139 3 3 chr15 12482188 12482533 -73213221 + AluSx SINE Alu 1 345 0 18192 168 18 5 chr15 12482634 12487067 -73208687 + L1PA13 LINE L1 1678 6162 -1 630 241 136 4 chr15 12487191 12487419 -73208335 + MER112 DNA MER1_type 1 258 -2 3739 233 37 11 chr15 12487930 12488205 -73207549 + L1P LINE L1 2168 2435 -3711 180 111 0 0 chr15 12488205 12488232 -73207522 + (TATG)n Simple_repeat Simple_repeat 2 28 0 3739 233 37 11 chr15 12488232 12489000 -73206754 + L1P LINE L1 2435 3241 -2905 4191 125 31 12 chr15 12489000 12489682 -73206072 + L1PA15 LINE L1 5465 6159 -6 3739 233 37 11 chr15 12489682 12489704 -73206050 + L1P LINE L1 3241 3261 -2885 307 200 0 0 chr15 12490552 12490602 -73205152 - L2 LINE L2 -8 3264 3215 281 233 68 0 chr15 12490744 12490817 -73204937 + MLT1J LTR MaLR 107 184 -327 555 245 13 22 chr15 12490891 12491084 -73204670 + MLT1J2 LTR MaLR 265 409 0 366 314 59 8 chr15 12491149 12491267 -73204487 + L2 LINE L2 3190 3313 0 320 339 15 8 chr15 12492366 12492496 -73203258 - MIR3 SINE MIR -69 139 9 207 0 0 0 chr15 12493419 12493442 -73202312 + (T)n Simple_repeat Simple_repeat 1 23 0 529 372 60 0 chr15 12493592 12493944 -73201810 - L2 LINE L2 -214 3099 2728 261 240 10 87 chr15 12494132 12494195 -73201559 - MER94 DNA DNA 0 134 80 2082 130 3 0 chr15 12494195 12494488 -73201266 - AluSc SINE Alu -15 294 1 261 240 10 87 chr15 12494488 12494528 -73201226 - MER94 DNA DNA -54 80 39 249 330 33 0 chr15 12495294 12495385 -73200369 + L2 LINE L2 2929 3022 -250 339 276 122 18 chr15 12496499 12496622 -73199132 + MIR SINE MIR 5 141 -67 502 237 25 97 chr15 12496639 12496917 -73198837 - MER102b DNA MER1_type 0 341 84 250 250 0 0 chr15 12496992 12497044 -73198710 + MIR3 SINE MIR 151 202 -6 2718 86 54 87 chr15 12498728 12498753 -73197001 + SVA Other Other 393 868 -520 2718 80 38 90 chr15 12498753 12499255 -73196499 + SVA Other Other 393 868 -518 24 67 0 0 chr15 12499929 12499974 -73195780 + GC_rich Low_complexity Low_complexity 1 45 0 6457 55 3 38 chr15 12500082 12500955 -73194799 + SVA Other Other 544 1386 0 412 304 82 18 chr15 12501698 12501918 -73193836 - MLT1L LTR MaLR -1 614 381 204 335 220 23 chr15 12502272 12502445 -73193309 + L3b LINE CR1 1372 1578 -5 569 333 49 12 chr15 12503083 12503326 -73192428 - LTR16A LTR ERVL -107 343 92 381 43 0 0 chr15 12503782 12503829 -73191925 + (TTC)n Simple_repeat Simple_repeat 1 47 0 751 263 0 0 chr15 12503835 12503987 -73191767 - FRAM SINE Alu -14 152 1 759 331 43 17 chr15 12504202 12504549 -73191205 - LTR16A LTR ERVL 0 450 95 252 246 72 94 chr15 12504868 12505006 -73190748 + MIR SINE MIR 59 193 -69 187 289 16 117 chr15 12505632 12505760 -73189994 - L2 LINE L2 -10 3262 3148 233 143 0 20 chr15 12505958 12506007 -73189747 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 214 255 0 0 chr15 12507150 12507197 -73188557 - L2 LINE L2 -9 3304 3258 652 254 135 0 chr15 12507601 12507794 -73187960 - MER20 DNA MER1_type 0 219 1 344 342 116 7 chr15 12507842 12508117 -73187637 + L2 LINE L2 2470 2774 -540 2259 118 0 0 chr15 12509563 12509867 -73185887 - AluSx SINE Alu -8 304 1 210 246 31 31 chr15 12510807 12510872 -73184882 - MIR SINE MIR -85 177 113 384 247 78 22 chr15 12512805 12513066 -73182688 - L1MEd LINE L1 -863 1627 1429 518 273 48 78 chr15 12513111 12513144 -73182610 - L1MEd LINE L1 -4926 1193 1161 2182 131 81 2 chr15 12513144 12513541 -73182213 - MSTA LTR MaLR 0 428 1 518 273 48 78 chr15 12513541 12513946 -73181808 - L1MEd LINE L1 -4958 1161 789 282 150 117 0 chr15 12513964 12514024 -73181730 - LTR16C LTR ERVL -20 471 405 346 270 157 64 chr15 12514026 12514230 -73181524 - LTR16C LTR ERVL -199 292 70 246 136 0 0 chr15 12514385 12514429 -73181325 + (TG)n Simple_repeat Simple_repeat 2 45 0 417 304 43 32 chr15 12514905 12515185 -73180569 - L1MEd LINE L1 -5825 294 12 334 288 108 36 chr15 12515301 12515440 -73180314 + MIR3 SINE MIR 33 181 -27 557 252 26 13 chr15 12516094 12516245 -73179509 + L2 LINE L2 3159 3311 -2 2030 139 14 0 chr15 12516525 12516819 -73178935 + AluSq SINE Alu 1 298 -15 444 272 65 50 chr15 12517225 12517504 -73178250 - L1ME1 LINE L1 -6 6160 5878 229 283 0 0 chr15 12517609 12517662 -73178092 + MIR SINE MIR 83 135 -73 200 239 209 0 chr15 12518643 12518710 -73177044 + L2 LINE L2 3232 3312 -1 663 302 87 36 chr15 12519377 12519850 -73175904 - L1M4 LINE L1 -3346 2800 2304 812 279 100 54 chr15 12519856 12520376 -73175378 + MLT1H LTR MaLR 1 544 -5 1009 134 38 0 chr15 12520532 12520689 -73175065 + L1PA16 LINE L1 6002 6164 -2 21 0 0 0 chr15 12520701 12520722 -73175032 + AT_rich Low_complexity Low_complexity 1 21 0 3923 90 75 17 chr15 12521470 12522070 -73173684 - MER41B LTR ERV1 0 635 1 578 309 75 0 chr15 12522098 12522286 -73173468 + MIR SINE MIR 50 251 -11 342 274 30 32 chr15 12522751 12522877 -73172877 + MIR3 SINE MIR 56 183 -25 627 202 0 0 chr15 12523380 12523489 -73172265 - FLAM_C SINE Alu -34 109 1 2679 96 13 0 chr15 12531302 12531688 -73164066 - L1PA13 LINE L1 -2 6161 5771 501 60 0 0 chr15 12531690 12531757 -73163997 - L1PA15 LINE L1 -328 5837 5771 400 108 54 0 chr15 12531759 12531833 -73163921 - L1PA10 LINE L1 -331 5837 5760 229 295 152 0 chr15 12532388 12532493 -73163261 + MIR SINE MIR 56 176 -86 717 330 130 17 chr15 12535741 12536095 -73159659 + L2 LINE L2 2445 2838 -476 391 316 101 34 chr15 12536103 12536340 -73159414 - L2 LINE L2 -20 3252 3000 592 313 97 8 chr15 12536379 12536638 -73159116 - L2 LINE L2 -561 2753 2472 230 236 0 18 chr15 12536758 12536813 -73158941 + L2 LINE L2 2920 2973 -340 1324 165 38 12 chr15 12536816 12537287 -73158467 - LTR9B LTR ERV1 0 644 107 2408 142 10 5 chr15 12537853 12538241 -73157513 + MLT1B LTR MaLR 1 390 0 522 115 0 0 chr15 12538380 12538458 -73157296 - MER116 DNA Mariner -2 78 1 490 279 143 7 chr15 12538756 12538910 -73156844 + MER5A DNA MER1_type 13 187 -2 323 297 148 70 chr15 12538943 12539172 -73156582 - L1MC/D LINE L1 -2236 5572 5326 294 29 0 0 chr15 12539597 12539632 -73156122 + (CA)n Simple_repeat Simple_repeat 1 35 0 2776 159 6 10 chr15 12542117 12542640 -73153114 - L1MB7 LINE L1 -20 6164 5644 357 189 9 90 chr15 12542747 12542858 -73152896 - L1MB7 LINE L1 -518 5662 5561 21 0 0 0 chr15 12543215 12543236 -73152518 + AT_rich Low_complexity Low_complexity 1 21 0 2387 71 0 3 chr15 12544391 12544687 -73151067 + AluY SINE Alu 1 295 -16 611 197 35 76 chr15 12546278 12546391 -73149363 - Tigger6a DNA MER2_type -514 1083 979 2227 46 7 4 chr15 12546391 12546700 -73149054 - AluY SINE Alu 0 310 1 611 197 35 76 chr15 12546700 12546783 -73148971 - Tigger6a DNA MER2_type -618 979 894 2006 225 36 0 chr15 12547282 12547753 -73148001 - Tigger6a DNA MER2_type -593 490 3 2614 174 44 23 chr15 12547837 12548410 -73147344 - L1MB5 LINE L1 -9 6165 5581 1935 254 76 50 chr15 12548410 12549459 -73146295 - L1ME LINE L1 -479 5691 4670 186 43 0 0 chr15 12549459 12549482 -73146272 + (CCA)n Simple_repeat Simple_repeat 1 23 0 1935 254 76 50 chr15 12549482 12549552 -73146202 - L1ME LINE L1 -1500 4670 4603 1442 209 47 14 chr15 12549552 12549848 -73145906 + AluJo SINE Alu 1 306 -6 1935 254 76 50 chr15 12549848 12550313 -73145441 - L1ME LINE L1 -1567 4603 4058 2361 59 10 13 chr15 12550377 12550723 -73145031 - AluY SINE Alu 0 345 1 2005 144 39 33 chr15 12550766 12551128 -73144626 - THE1B LTR MaLR 0 364 1 355 345 102 29 chr15 12551660 12551906 -73143848 - L2 LINE L2 -459 2855 2592 1773 98 4 15 chr15 12554641 12554915 -73140839 - L1MA2 LINE L1 -8 6296 6026 315 261 85 31 chr15 12556800 12556930 -73138824 + L2 LINE L2 3136 3272 0 556 256 20 50 chr15 12557100 12557297 -73138457 + MIR SINE MIR 61 251 -11 581 219 0 7 chr15 12560439 12560590 -73135164 + CT-rich Low_complexity Low_complexity 3 152 0 261 180 0 0 chr15 12561417 12561467 -73134287 + T-rich Low_complexity Low_complexity 1 50 0 206 280 30 76 chr15 12562744 12562876 -73132878 + L2 LINE L2 2938 3063 -209 785 148 74 34 chr15 12565340 12565489 -73130265 + FAM SINE Alu 12 166 -19 478 291 127 19 chr15 12565884 12566097 -73129657 + MIR SINE MIR 25 260 -2 297 109 0 0 chr15 12566304 12566350 -73129404 + (TG)n Simple_repeat Simple_repeat 1 46 0 199 301 215 11 chr15 12566960 12567053 -73128701 - MIR SINE MIR -63 145 34 * 557 268 112 34 chr15 12567035 12567240 -73128514 + MIR SINE MIR 40 260 -2 414 226 17 17 chr15 12567254 12567369 -73128385 + MIR SINE MIR 148 262 0 30 0 0 0 chr15 12567519 12567549 -73128205 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr15 12569737 12569766 -73125988 + AT_rich Low_complexity Low_complexity 1 29 0 2056 123 3 0 chr15 12572031 12572315 -73123439 - AluSx SINE Alu -27 285 1 2332 63 10 3 chr15 12572853 12573153 -73122601 + AluY SINE Alu 1 302 -9 185 262 36 60 chr15 12573474 12573558 -73122196 + MIR SINE MIR 181 262 0 267 31 0 0 chr15 12573607 12573639 -73122115 + (TATAG)n Simple_repeat Simple_repeat 2 33 0 2408 70 3 0 chr15 12573723 12574024 -73121730 - AluY SINE Alu -7 304 3 510 239 51 124 chr15 12578625 12578859 -73116895 + MIR SINE MIR 20 236 -26 1873 169 10 0 chr15 12580511 12580818 -73114936 - AluSx SINE Alu -2 310 1 257 242 45 0 chr15 12581247 12581313 -73114441 - MIR SINE MIR -63 145 77 243 146 0 0 chr15 12581589 12581630 -73114124 + (TA)n Simple_repeat Simple_repeat 1 41 0 301 207 0 0 chr15 12581630 12581688 -73114066 - L1MC4 LINE L1 -1339 6703 6646 222 337 238 10 chr15 12584430 12584623 -73111131 - L3 LINE CR1 -12 1565 1329 295 328 23 8 chr15 12584980 12585111 -73110643 - L2 LINE L2 -630 2684 2552 267 335 116 19 chr15 12585132 12585287 -73110467 + MIR3 SINE MIR 18 187 -21 310 328 116 20 chr15 12585699 12585897 -73109857 - MIR SINE MIR -20 242 26 392 195 58 0 chr15 12586208 12586295 -73109459 - MIR SINE MIR -1 261 170 638 192 93 7 chr15 12586932 12587083 -73108671 + MLT1A1 LTR MaLR 1 164 -201 2165 133 3 3 chr15 12587407 12587716 -73108038 + AluSx SINE Alu 2 310 -2 207 162 0 0 chr15 12587752 12587789 -73107965 + CT-rich Low_complexity Low_complexity 4 40 0 6712 70 5 1 chr15 12587932 12589634 -73106120 - L1PA8 LINE L1 -13 6159 4445 204 258 106 15 chr15 12590803 12590869 -73104885 + MIR SINE MIR 19 90 -118 273 311 54 34 chr15 12590879 12591027 -73104727 - MIR3 SINE MIR -48 160 10 274 288 54 63 chr15 12591031 12591142 -73104612 - L3b LINE CR1 -199 1384 1275 349 274 35 18 chr15 12593651 12593764 -73101990 - MLT1I LTR MaLR -51 358 244 421 217 47 23 chr15 12593784 12593913 -73101841 - MLT1I LTR MaLR -269 140 9 252 288 79 65 chr15 12594139 12594278 -73101476 - MIR SINE MIR -70 192 52 197 263 188 0 chr15 12596861 12596941 -73098813 - MIR3 SINE MIR -7 201 107 494 277 15 31 chr15 12597900 12598030 -73097724 - L2 LINE L2 0 3313 3186 825 232 39 54 chr15 12649874 12650210 -73045544 + Charlie1 DNA MER1_type 215 545 -2216 1297 151 121 4 chr15 12650226 12650498 -73045256 + L1MA9 LINE L1 6007 6310 -2 2415 296 138 50 chr15 12650511 12652208 -73043546 + Charlie1 DNA MER1_type 555 2475 -286 690 304 66 12 chr15 12654641 12654884 -73040870 - MIR SINE MIR 0 262 7 22 35 0 0 chr15 12655490 12655519 -73040235 + AT_rich Low_complexity Low_complexity 1 29 0 315 240 94 82 chr15 12655538 12655709 -73040045 - MIR SINE MIR -1 261 89 2232 109 7 0 chr15 12655860 12656154 -73039600 - AluSc SINE Alu -12 297 2 392 225 101 3 chr15 12657279 12657450 -73038304 + MIR SINE MIR 4 248 -14 658 329 105 10 chr15 12657802 12658385 -73037369 - L2 LINE L2 0 3313 2648 267 278 61 35 chr15 12658479 12658594 -73037160 - MLT1K LTR MaLR -93 495 378 390 222 37 12 chr15 12658946 12659027 -73036727 - L2 LINE L2 -39 3274 3192 1050 263 70 10 chr15 12660140 12660417 -73035337 + LTR41 LTR ERVL 1 296 -477 340 210 222 0 chr15 12660417 12660498 -73035256 + MER45 DNA AcHobo 1 99 -941 227 31 31 0 chr15 12660931 12660963 -73034791 + (TAG)n Simple_repeat Simple_repeat 1 33 0 21 71 0 0 chr15 12661746 12661788 -73033966 + AT_rich Low_complexity Low_complexity 1 42 0 399 327 15 40 chr15 12661974 12662173 -73033581 - L1MEd LINE L1 -4906 1213 1020 235 148 16 16 chr15 12662810 12662871 -73032883 + CT-rich Low_complexity Low_complexity 2 62 0 306 125 0 0 chr15 12663351 12663399 -73032355 + (TG)n Simple_repeat Simple_repeat 1 48 0 193 370 0 0 chr15 12663487 12663560 -73032194 - L2 LINE L2 0 3272 3200 26 64 0 0 chr15 12664298 12664345 -73031409 + AT_rich Low_complexity Low_complexity 1 47 0 183 80 0 0 chr15 12664957 12664982 -73030772 + (T)n Simple_repeat Simple_repeat 1 25 0 206 277 0 0 chr15 12665096 12665143 -73030611 + (CA)n Simple_repeat Simple_repeat 2 48 0 427 160 43 11 chr15 12666560 12666654 -73029100 - MER103 DNA DNA -10 156 60 634 328 4 45 chr15 12666655 12666923 -73028831 + MIR SINE MIR 1 257 -5 762 11 0 0 chr15 12667937 12668024 -73027730 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 1154 115 0 0 chr15 12668027 12668201 -73027553 + L1PA13 LINE L1 5875 6048 -115 186 267 160 0 chr15 12668592 12668667 -73027087 - L2 LINE L2 -214 3058 2972 1688 290 172 13 chr15 12668692 12669689 -73026065 + L2 LINE L2 2133 3267 -5 203 259 0 19 chr15 12669978 12670032 -73025722 + CT-rich Low_complexity Low_complexity 3 55 0 268 305 9 9 chr15 12670134 12670166 -73025588 + (TA)n Simple_repeat Simple_repeat 2 33 -73 1923 146 43 30 chr15 12670166 12670536 -73025218 + THE1C LTR MaLR 1 375 0 268 305 9 9 chr15 12670536 12670608 -73025146 + (TA)n Simple_repeat Simple_repeat 32 106 0 198 167 0 0 chr15 12671417 12671447 -73024307 - MER5A DNA MER1_type -159 30 1 2264 194 71 28 chr15 12673599 12674165 -73021589 - L1MD3 LINE L1 0 7995 7406 384 286 0 0 chr15 12674168 12674252 -73021502 - MLT1F1 LTR MaLR -449 118 35 723 222 56 0 chr15 12674252 12674450 -73021304 - L1MD3 LINE L1 -879 7116 6908 4830 114 12 5 chr15 12674450 12675211 -73020543 - L1MA4A LINE L1 -4 6299 5534 14507 199 27 12 chr15 12675211 12678716 -73017038 - L1 LINE L1 -870 5978 2496 1011 119 62 0 chr15 12678725 12678918 -73016836 - L1MA3 LINE L1 0 6305 6101 1879 116 14 7 chr15 12678918 12679212 -73016542 + L1MA3 LINE L1 5780 6075 -230 * 8275 168 16 12 chr15 12679208 12680646 -73015108 - L1 LINE L1 -4424 2425 983 2217 224 33 88 chr15 12680649 12681433 -73014321 - L1MD3 LINE L1 -1072 6923 6183 2609 243 95 56 chr15 12681515 12681619 -73014135 - L1MCc LINE L1 -3113 3828 3730 2091 128 3 0 chr15 12681619 12681907 -73013847 - AluSx SINE Alu -23 289 1 2609 243 95 56 chr15 12681907 12682872 -73012882 - L1MCc LINE L1 -3211 3730 2804 2213 46 21 25 chr15 12682872 12683186 -73012568 + AluY SINE Alu 1 313 0 2609 243 95 56 chr15 12683186 12683225 -73012529 - L1MCc LINE L1 -4137 2804 2768 2065 116 55 25 chr15 12683225 12683587 -73012167 + THE1C LTR MaLR 1 373 -2 2609 243 95 56 chr15 12683587 12683834 -73011920 - L1MCc LINE L1 -4173 2768 2532 2274 61 3 7 chr15 12683834 12684129 -73011625 + AluY SINE Alu 1 294 -17 2609 243 95 56 chr15 12684129 12685538 -73010216 - L1MCc LINE L1 -4409 2532 854 357 290 81 76 chr15 12685701 12686073 -73009681 - L1MCc LINE L1 -5624 798 429 1836 112 8 0 chr15 12686073 12686322 -73009432 - AluSx SINE Alu -5 307 57 1645 129 8 8 chr15 12686322 12686561 -73009193 - AluSc SINE Alu -68 241 1 357 290 81 76 chr15 12686561 12686648 -73009106 - L1MCc LINE L1 -5992 430 12 2036 110 28 8 chr15 12687973 12688329 -73007425 + L1MA8 LINE L1 5927 6289 -2 843 313 61 10 chr15 12688529 12688839 -73006915 + MLT1J2 LTR MaLR 3 328 -122 2059 122 0 17 chr15 12689182 12689650 -73006104 - AluSx SINE Alu 0 463 1 345 304 66 41 chr15 12690170 12690212 -73005542 - L1MEc LINE L1 -3783 2432 2393 1240 202 73 48 chr15 12690212 12690568 -73005186 - MLT1A1 LTR MaLR 0 365 1 345 304 66 41 chr15 12690568 12690815 -73004939 - L1MEc LINE L1 -3822 2393 2172 442 353 85 28 chr15 12691633 12692500 -73003254 + L1ME4a LINE L1 4372 5301 -845 1021 270 88 19 chr15 12692508 12693038 -73002716 + L1ME4a LINE L1 5332 5912 -209 1979 116 64 59 chr15 12693160 12693548 -73002206 - MLT1B LTR MaLR 0 390 1 2107 88 49 26 chr15 12693638 12693944 -73001810 - AluSp SINE Alu 0 313 1 23 0 0 0 chr15 12694162 12694185 -73001569 + AT_rich Low_complexity Low_complexity 1 23 0 243 157 0 0 chr15 12695971 12696022 -72999732 + GA-rich Low_complexity Low_complexity 2 52 0 371 311 108 0 chr15 12696622 12696789 -72998965 - MIR SINE MIR -39 223 39 21 0 0 0 chr15 12698062 12698083 -72997671 + AT_rich Low_complexity Low_complexity 1 21 0 1760 191 43 3 chr15 12699572 12699923 -72995831 - MLT1A1 LTR MaLR 0 365 1 642 259 138 12 chr15 12701556 12701803 -72993951 - LTR16A1 LTR ERVL -12 445 168 698 188 7 0 chr15 12701994 12702138 -72993616 + L1P LINE L1 4319 4463 -1683 29 70 0 0 chr15 12702138 12702195 -72993559 + AT_rich Low_complexity Low_complexity 1 57 0 959 142 28 28 chr15 12704497 12704673 -72991081 + L1PB4 LINE L1 5979 6154 -2 208 151 19 38 chr15 12704992 12705045 -72990709 + (TA)n Simple_repeat Simple_repeat 1 52 0 199 328 0 0 chr15 12705860 12705921 -72989833 - MIR SINE MIR -139 123 63 33 90 0 0 chr15 12706170 12706259 -72989495 + AT_rich Low_complexity Low_complexity 1 89 0 180 0 0 0 chr15 12706587 12706607 -72989147 + (TG)n Simple_repeat Simple_repeat 1 20 0 1131 195 7 121 chr15 12706615 12706756 -72988998 - AluSp SINE Alu -41 272 183 507 33 0 0 chr15 12706756 12706817 -72988937 + (TG)n Simple_repeat Simple_repeat 2 62 0 1131 195 7 121 chr15 12706817 12706982 -72988772 - AluSp SINE Alu -130 183 1 2835 255 29 43 chr15 12706983 12707834 -72987920 + L2 LINE L2 1993 2831 -483 711 284 30 51 chr15 12707921 12708217 -72987537 + L2 LINE L2 3023 3312 -1 23 33 0 0 chr15 12709483 12709513 -72986241 + AT_rich Low_complexity Low_complexity 1 30 0 264 258 22 11 chr15 12711767 12711856 -72983898 + MLT1F1 LTR MaLR 36 125 -442 2144 199 72 34 chr15 12712042 12712594 -72983160 + L1MC3 LINE L1 7205 7777 -8 472 343 24 94 chr15 12713013 12713386 -72982368 + L2 LINE L2 2918 3264 -8 2774 166 21 52 chr15 12713659 12713880 -72981874 + L1PA16 LINE L1 5570 5796 -370 414 0 0 0 chr15 12713880 12713926 -72981828 + (TG)n Simple_repeat Simple_repeat 2 47 0 2774 166 21 52 chr15 12713926 12714317 -72981437 + L1PA16 LINE L1 5796 6163 -3 194 319 53 71 chr15 12714524 12714637 -72981117 + L3b LINE CR1 1468 1578 -5 2226 158 37 35 chr15 12717199 12717630 -72978124 - MSTB1 LTR MaLR 0 432 1 311 348 58 37 chr15 12717901 12718229 -72977525 + L2 LINE L2 2159 2493 -821 267 288 51 42 chr15 12718373 12718491 -72977263 + L3 LINE CR1 632 750 -827 330 329 147 53 chr15 12719042 12719416 -72976338 + L3 LINE CR1 772 1180 -397 2340 67 10 16 chr15 12719416 12719729 -72976025 + AluY SINE Alu 1 311 0 356 319 9 80 chr15 12719831 12720044 -72975710 - L3 LINE CR1 -410 1167 970 502 332 62 5 chr15 12720061 12720272 -72975482 + L3 LINE CR1 1280 1502 -75 225 200 17 50 chr15 12720389 12720449 -72975305 + Charlie8 DNA MER1_type 1360 1417 -1000 299 316 188 0 chr15 12721198 12721315 -72974439 + MIR3 SINE MIR 21 159 -49 1061 259 97 43 chr15 12722503 12722896 -72972858 + MLT1J2 LTR MaLR 32 445 -5 706 352 60 45 chr15 12723187 12723965 -72971789 - L2 LINE L2 0 3313 2527 507 247 39 39 chr15 12723965 12724119 -72971635 - L2 LINE L2 -985 2329 2176 354 237 17 42 chr15 12724593 12724711 -72971043 - L1ME3A LINE L1 0 6239 6125 333 269 46 19 chr15 12724784 12724892 -72970862 - L2 LINE L2 -2 3311 3201 212 211 58 0 chr15 12725056 12725108 -72970646 + L2 LINE L2 3218 3272 0 286 303 129 8 chr15 12727080 12727212 -72968542 + MIR SINE MIR 1 148 -114 33 25 0 0 chr15 12731481 12731521 -72964233 + AT_rich Low_complexity Low_complexity 1 40 0 261 291 0 0 chr15 12733119 12733174 -72962580 + L2 LINE L2 3247 3301 -12 356 122 49 12 chr15 12734203 12734285 -72961469 + L1MB7 LINE L1 6100 6184 0 249 351 0 11 chr15 12734423 12734517 -72961237 - MIR SINE MIR -81 127 35 442 272 133 45 chr15 12735227 12735558 -72960196 + L1ME4a LINE L1 4487 4846 -1300 1072 294 37 41 chr15 12735853 12736289 -72959465 - LTR16C LTR ERVL -23 468 35 581 208 12 24 chr15 12736914 12737082 -72958672 - MER96B DNA MER1_type? -237 180 15 22 0 0 0 chr15 12737251 12737273 -72958481 + AT_rich Low_complexity Low_complexity 1 22 0 439 258 85 50 chr15 12737433 12737716 -72958038 + L1ME4a LINE L1 5550 5842 -279 283 256 0 0 chr15 12741898 12741976 -72953778 + T-rich Low_complexity Low_complexity 1 78 0 393 306 50 33 chr15 12742419 12742540 -72953214 - L2 LINE L2 0 3272 3150 1541 170 10 35 chr15 12742573 12742861 -72952893 - AluJo SINE Alu -31 281 1 231 217 0 0 chr15 12743970 12744030 -72951724 + (TA)n Simple_repeat Simple_repeat 1 60 0 201 213 0 21 chr15 12744517 12744564 -72951190 + (TA)n Simple_repeat Simple_repeat 1 46 0 24 32 0 0 chr15 12746649 12746680 -72949074 + AT_rich Low_complexity Low_complexity 1 31 0 256 200 17 17 chr15 12746888 12746948 -72948806 - L1ME3A LINE L1 -224 6015 5956 2214 170 26 20 chr15 12747031 12747484 -72948270 - L1MC1 LINE L1 -6 6327 5872 3396 156 69 18 chr15 12747584 12748542 -72947212 - L1MC1 LINE L1 -475 5858 4847 304 250 40 40 chr15 12748545 12748781 -72946973 - L1ME3A LINE L1 -729 5506 5228 1268 269 121 26 chr15 12748865 12750234 -72945520 - L1MEc LINE L1 -2814 3401 1941 531 266 126 23 chr15 12750582 12750845 -72944909 - LTR16A1 LTR ERVL 0 457 168 408 167 191 24 chr15 12751016 12751142 -72944612 + Charlie4 DNA MER1_type 20 166 -1795 210 71 0 0 chr15 12751876 12751904 -72943850 + (T)n Simple_repeat Simple_repeat 1 28 0 26 0 0 0 chr15 12752480 12752506 -72943248 + AT_rich Low_complexity Low_complexity 1 26 0 182 312 110 18 chr15 12753368 12753477 -72942277 + MIR SINE MIR 142 260 -2 526 309 62 0 chr15 12753956 12754118 -72941636 - MER63A DNA MER1_type -4 206 35 371 277 20 0 chr15 12754815 12754916 -72940838 - MIR SINE MIR -3 259 157 2208 87 3 10 chr15 12754916 12755225 -72940529 + MER41A LTR ERV1 248 554 0 1392 94 25 0 chr15 12755225 12755427 -72940327 - HSMAR2 DNA Mariner -1095 207 1 308 262 96 3 chr15 12756313 12756442 -72939312 - MIR SINE MIR -64 144 21 273 57 0 0 chr15 12757507 12757542 -72938212 + (T)n Simple_repeat Simple_repeat 1 35 0 2241 78 4 0 chr15 12759699 12760003 -72935751 - AluY SINE Alu 0 305 1 560 238 131 19 chr15 12762316 12762476 -72933278 + MER45A DNA AcHobo 1 178 0 2045 125 3 7 chr15 12762698 12763002 -72932752 + AluSx SINE Alu 1 303 -9 909 298 66 46 chr15 12764403 12764954 -72930800 + L2 LINE L2 2503 3054 -259 6935 77 7 1 chr15 12764985 12766362 -72929392 - L1PA7 LINE L1 -26 6128 4744 * 7999 78 11 3 chr15 12766353 12767439 -72928315 + L1PA7 LINE L1 3641 4735 -1411 655 264 239 27 chr15 12767489 12767928 -72927826 + MLT1H LTR MaLR 2 533 -16 208 250 68 45 chr15 12768548 12768636 -72927118 - L2 LINE L2 0 3313 3224 188 312 101 28 chr15 12770242 12770351 -72925403 + L2 LINE L2 3146 3262 -10 1960 111 116 14 chr15 12770518 12770871 -72924883 - L1MA4A LINE L1 -6 6297 5909 387 262 16 71 chr15 12772010 12772136 -72923618 - L2 LINE L2 -5 3308 3190 340 164 82 91 chr15 12772204 12772314 -72923440 - MER53 DNA DNA 0 189 81 504 284 54 86 chr15 12772708 12772930 -72922824 + MIR SINE MIR 8 222 -40 2062 137 0 3 chr15 12773668 12773968 -72921786 + AluSx SINE Alu 1 299 -13 198 0 0 0 chr15 12774721 12774743 -72921011 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 636 14 0 0 chr15 12774747 12774820 -72920934 - L1PA5 LINE L1 -9 6145 6073 450 0 0 0 chr15 12775116 12775166 -72920588 + (TG)n Simple_repeat Simple_repeat 2 51 0 238 338 0 12 chr15 12775416 12775496 -72920258 - MIR SINE MIR -132 130 52 23 0 0 0 chr15 12776371 12776394 -72919360 + AT_rich Low_complexity Low_complexity 1 23 0 210 314 99 33 chr15 12776863 12776984 -72918770 - L2 LINE L2 -5 3267 3139 2203 102 0 3 chr15 12777300 12777615 -72918139 + AluSq SINE Alu 1 314 0 190 0 0 0 chr15 12777594 12777642 -72918112 + (CAA)n Simple_repeat Simple_repeat 1 48 0 330 180 0 0 chr15 12778597 12778658 -72917096 + L1ME LINE L1 5626 5686 -480 1054 204 82 4 chr15 12778667 12778947 -72916807 - L1ME LINE L1 -581 5585 5284 832 228 129 0 chr15 12778944 12779146 -72916608 - L1MC/D LINE L1 -2042 6161 5934 * 2168 250 82 6 chr15 12779140 12779919 -72915835 - L1MC/D LINE L1 -1534 5030 4193 14289 140 20 22 chr15 12779951 12780906 -72914848 - Tigger1 DNA MER2_type -13 2405 1449 782 181 0 8 chr15 12780906 12781039 -72914715 - FLAM_C SINE Alu -1 132 1 14289 140 20 22 chr15 12781039 12782493 -72913261 - Tigger1 DNA MER2_type -969 1449 1 3894 222 79 35 chr15 12782536 12784234 -72911520 - L1MEc LINE L1 -2422 4142 2411 1349 298 63 20 chr15 12784294 12784824 -72910930 + L2 LINE L2 2765 3312 -1 7160 179 72 21 chr15 12786639 12786745 -72909009 - L1MC3 LINE L1 0 7785 7686 1798 178 0 3 chr15 12786745 12787031 -72908723 + AluJb SINE Alu 1 285 -27 7160 179 72 21 chr15 12787031 12787777 -72907977 - L1MC3 LINE L1 -99 7686 6979 351 0 0 0 chr15 12787777 12787816 -72907938 + (TG)n Simple_repeat Simple_repeat 1 39 0 216 0 0 0 chr15 12787815 12787839 -72907915 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 7160 179 72 21 chr15 12787816 12788575 -72907179 - L1MC3 LINE L1 -806 6979 6115 1173 242 51 23 chr15 12788570 12788921 -72906833 - L1MEc LINE L1 -5116 929 569 * 2358 126 22 3 chr15 12789005 12789361 -72906393 + THE1B LTR MaLR 1 363 -1 293 177 32 0 chr15 12789523 12789585 -72906169 - L1MEc LINE L1 -5086 959 896 1437 264 16 46 chr15 12789591 12790087 -72905667 - L1MEc LINE L1 -5562 483 3 235 301 0 0 chr15 12790123 12790196 -72905558 - MIR SINE MIR -66 196 124 2417 63 3 0 chr15 12790429 12790730 -72905024 + AluY SINE Alu 1 302 -9 356 277 136 35 chr15 12792232 12792437 -72903317 + MIR SINE MIR 32 256 -6 2367 82 3 0 chr15 12793241 12793545 -72902209 - AluY SINE Alu -6 305 1 1171 208 17 97 chr15 12794031 12794392 -72901362 + L1ME1 LINE L1 5501 5832 -334 2228 96 10 13 chr15 12794467 12794779 -72900975 - AluSq SINE Alu -2 311 1 2060 112 39 3 chr15 12795990 12796295 -72899459 - MER7A DNA MER2_type 0 346 33 352 299 84 43 chr15 12796367 12796697 -72899057 - L1ME3A LINE L1 -233 5937 5587 916 265 110 60 chr15 12796697 12797180 -72898574 + MLT1J LTR MaLR 5 511 0 352 299 84 43 chr15 12797180 12797243 -72898511 - L1ME3A LINE L1 -583 5587 5528 197 301 27 0 chr15 12797343 12797416 -72898338 - MIR SINE MIR -62 146 72 340 315 107 0 chr15 12798944 12799093 -72896661 + MIR3 SINE MIR 35 199 -9 244 245 0 0 chr15 12799195 12799248 -72896506 + MLT1I LTR MaLR 72 124 -285 529 186 34 8 chr15 12799423 12799541 -72896213 + L1PA8A LINE L1 6011 6131 0 287 323 0 0 chr15 12800105 12800170 -72895584 - L2 LINE L2 0 3272 3208 365 331 37 7 chr15 12800708 12800844 -72894910 - MIR SINE MIR -121 141 2 2498 191 15 21 chr15 12801019 12801491 -72894263 + MER70A LTR ERVL 4 472 0 21 36 0 0 chr15 12801575 12801603 -72894151 + AT_rich Low_complexity Low_complexity 1 28 0 213 196 0 0 chr15 12801721 12801772 -72893982 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 271 309 201 7 chr15 12803719 12803868 -72891886 - MIR SINE MIR -50 212 35 409 346 67 8 chr15 12804121 12804375 -72891379 + L2 LINE L2 2811 3079 -193 181 365 81 14 chr15 12804413 12804487 -72891267 + L2 LINE L2 3157 3235 -37 2791 146 38 23 chr15 12804576 12805097 -72890657 + L1MB2 LINE L1 5624 6152 -19 1754 159 107 6 chr15 12805098 12805463 -72890291 + L1MA4 LINE L1 5893 6294 -6 1738 53 0 0 chr15 12805877 12806084 -72889670 + AluY SINE Alu 100 306 -5 471 374 20 5 chr15 12806143 12806346 -72889408 - MIR SINE MIR -54 208 3 225 384 66 5 chr15 12806419 12806617 -72889137 + L3b LINE CR1 1243 1452 -131 21 0 0 0 chr15 12806791 12806812 -72888942 + AT_rich Low_complexity Low_complexity 1 21 0 209 179 0 0 chr15 12808371 12808410 -72887344 + (CATA)n Simple_repeat Simple_repeat 1 39 0 432 274 116 7 chr15 12809583 12809729 -72886025 - MIR SINE MIR -53 209 48 509 253 205 9 chr15 12811549 12811778 -72883976 - LTR33A LTR ERVL -16 507 234 880 301 118 22 chr15 12812235 12812737 -72883017 - MLT1L LTR MaLR 0 615 66 1410 215 0 4 chr15 12812890 12813164 -72882590 + AluJo SINE Alu 1 273 -39 312 48 0 0 chr15 12813177 12813219 -72882535 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 252 274 14 14 chr15 12813219 12813292 -72882462 - MIR SINE MIR -172 90 18 189 274 20 0 chr15 12813387 12813438 -72882316 + L2 LINE L2 3220 3271 -1 230 348 113 17 chr15 12814554 12814669 -72881085 - MIR3 SINE MIR -38 170 45 599 301 99 41 chr15 12814846 12815415 -72880339 + MLT1F LTR MaLR 1 595 0 24 32 0 0 chr15 12816201 12816232 -72879522 + AT_rich Low_complexity Low_complexity 1 31 0 237 108 0 0 chr15 12818790 12818827 -72876927 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 228 409 18 18 chr15 12818827 12818991 -72876763 - L2 LINE L2 -7 3265 3102 1532 237 22 14 chr15 12819038 12819409 -72876345 - MLT1A2 LTR MaLR 0 374 1 2698 276 89 71 chr15 12819854 12820736 -72875018 - L2 LINE L2 -36 3277 2368 1598 95 25 8 chr15 12820736 12820978 -72874776 + L1PB2 LINE L1 5906 6151 0 2698 276 89 71 chr15 12820978 12821769 -72873985 - L2 LINE L2 -945 2368 1593 296 239 30 22 chr15 12821895 12822029 -72873725 + (TA)n Simple_repeat Simple_repeat 2 136 0 22 0 0 0 chr15 12823441 12823463 -72872291 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr15 12823588 12823614 -72872140 + AT_rich Low_complexity Low_complexity 1 26 0 233 246 18 0 chr15 12823720 12823777 -72871977 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 323 345 67 67 chr15 12824375 12824613 -72871141 - MIR SINE MIR -5 257 20 1236 238 47 74 chr15 12824651 12825122 -72870632 - L1MD3 LINE L1 -24 7971 7514 345 100 0 0 chr15 12825348 12825398 -72870356 + (TG)n Simple_repeat Simple_repeat 1 50 0 961 196 30 15 chr15 12825406 12825605 -72870149 + MER63A DNA MER1_type 9 210 0 2486 47 0 3 chr15 12825900 12826197 -72869557 + AluY SINE Alu 1 296 -15 1703 218 126 18 chr15 12826767 12827221 -72868533 + MLT1D LTR MaLR 2 504 -1 772 196 0 0 chr15 12827559 12827692 -72868062 + AluJ SINE Alu 1 133 -169 944 200 0 6 chr15 12827750 12827915 -72867839 + AluJ SINE Alu 121 284 -28 194 274 217 28 chr15 12828358 12828464 -72867290 + MIR SINE MIR 17 142 -66 22 0 0 0 chr15 12828497 12828519 -72867235 + AT_rich Low_complexity Low_complexity 1 22 0 391 230 36 97 chr15 12830128 12830293 -72865461 + MIR SINE MIR 52 206 -56 319 357 82 31 chr15 12830317 12830513 -72865241 + MIR SINE MIR 57 262 0 252 0 0 0 chr15 12831204 12831232 -72864522 + (CA)n Simple_repeat Simple_repeat 2 29 0 2102 108 0 4 chr15 12832981 12833259 -72862495 + AluSq SINE Alu 1 277 -36 325 289 39 16 chr15 12833544 12833672 -72862082 + MIR3 SINE MIR 78 208 0 261 385 106 15 chr15 12834056 12834386 -72861368 - L2 LINE L2 -26 3287 2928 502 258 0 8 chr15 12834484 12834616 -72861138 + MER94 DNA DNA 1 131 -3 650 352 112 31 chr15 12834648 12835256 -72860498 - L2 LINE L2 -577 2737 2081 357 248 23 15 chr15 12835348 12835481 -72860273 + LTR16C LTR ERVL 340 473 -18 266 305 153 28 chr15 12835482 12835659 -72860095 - L2 LINE L2 -1238 2076 1878 2880 48 6 0 chr15 12835661 12836017 -72859737 - L1PA7 LINE L1 -267 5887 5530 1467 85 0 5 chr15 12836004 12836205 -72859549 + L1PA7 LINE L1 5880 6079 -75 * 1859 83 4 0 chr15 12836207 12836447 -72859307 + AluY SINE Alu 58 298 -13 183 204 0 0 chr15 12836448 12836492 -72859262 - L2 LINE L2 -1622 1692 1649 643 369 95 7 chr15 12836494 12837033 -72858721 - L2 LINE L2 -1915 1399 814 333 343 86 69 chr15 12837429 12837779 -72857975 + L2 LINE L2 2916 3271 -1 301 343 127 25 chr15 12839743 12839988 -72855766 + L2 LINE L2 530 799 -2515 1869 146 30 3 chr15 12840950 12841245 -72854509 - AluSx SINE Alu -9 303 1 330 319 143 50 chr15 12841275 12841840 -72853914 + L2 LINE L2 1606 2223 -1091 376 259 28 9 chr15 12842010 12842118 -72853636 - MIR SINE MIR -149 113 4 * 432 334 100 46 chr15 12842118 12842510 -72853244 + L2 LINE L2 2338 2776 -538 455 285 32 16 chr15 12842510 12842696 -72853058 + MER5A DNA MER1_type 1 189 0 432 334 100 46 chr15 12842696 12842909 -72852845 + L2 LINE L2 2776 2976 -338 294 350 35 7 chr15 12843413 12843556 -72852198 - MIR SINE MIR -75 187 41 423 0 0 0 chr15 12844173 12844220 -72851534 + (TG)n Simple_repeat Simple_repeat 2 48 0 189 0 0 0 chr15 12845350 12845371 -72850383 + (A)n Simple_repeat Simple_repeat 1 21 0 310 314 107 13 chr15 12846955 12847114 -72848640 - MIR SINE MIR -87 175 2 780 296 76 58 chr15 12847412 12847845 -72847909 - MLT1L LTR MaLR -7 608 168 682 204 109 17 chr15 12848035 12848231 -72847523 - LTR41 LTR ERVL -551 244 2 228 316 25 13 chr15 12848696 12848775 -72846979 - L2 LINE L2 0 3272 3193 236 305 0 12 chr15 12849660 12849742 -72846012 + GA-rich Low_complexity Low_complexity 1 81 0 206 118 0 0 chr15 12850626 12850660 -72845094 + (TA)n Simple_repeat Simple_repeat 1 34 0 278 295 8 23 chr15 12850702 12850831 -72844923 + (TA)n Simple_repeat Simple_repeat 2 128 0 29 28 0 0 chr15 12851067 12851103 -72844651 + AT_rich Low_complexity Low_complexity 1 36 0 345 343 91 14 chr15 12852381 12852600 -72843154 + L3 LINE CR1 1186 1421 -156 201 147 0 0 chr15 12853916 12853950 -72841804 + (A)n Simple_repeat Simple_repeat 1 34 0 1659 216 8 35 chr15 12854622 12854997 -72840757 - MLT1A1 LTR MaLR 0 365 1 2145 106 0 0 chr15 12855493 12855775 -72839979 - AluY SINE Alu -10 301 20 324 259 92 87 chr15 12858090 12858275 -72837479 + MLT1H LTR MaLR 107 292 -257 2274 97 7 0 chr15 12859025 12859333 -72836421 + AluSg SINE Alu 1 310 0 2707 36 0 0 chr15 12859748 12860054 -72835700 - AluY SINE Alu -5 306 1 425 237 47 33 chr15 12861184 12861395 -72834359 - L1ME4a LINE L1 0 6121 5908 405 58 0 0 chr15 12862404 12862456 -72833298 + (TG)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr15 12862942 12862964 -72832790 + AT_rich Low_complexity Low_complexity 1 22 0 505 252 37 106 chr15 12866150 12866396 -72829358 - MIR SINE MIR -20 242 14 21 36 0 0 chr15 12866479 12866507 -72829247 + AT_rich Low_complexity Low_complexity 1 28 0 222 233 0 0 chr15 12866579 12866622 -72829132 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 245 272 105 70 chr15 12866646 12866903 -72828851 - L1MC4 LINE L1 -122 7920 7655 375 289 118 54 chr15 12867199 12867403 -72828351 - MIR SINE MIR 0 262 46 363 330 165 0 chr15 12867523 12867705 -72828049 + L2 LINE L2 2557 2768 -546 326 255 21 0 chr15 12867712 12867806 -72827948 - MER5B DNA MER1_type -6 172 77 764 143 69 29 chr15 12867814 12867989 -72827765 - MER53 DNA DNA 0 189 8 297 213 16 0 chr15 12868022 12868083 -72827671 + MER5B DNA MER1_type 117 178 0 888 148 0 7 chr15 12868866 12869001 -72826753 + AluJo SINE Alu 1 134 -178 1836 193 30 30 chr15 12869132 12869248 -72826506 - MLT1A1 LTR MaLR 0 365 250 3362 144 34 0 chr15 12869248 12869784 -72825970 + MER41C LTR ERV1 1 554 0 1836 193 30 30 chr15 12869784 12870029 -72825725 - MLT1A1 LTR MaLR -114 251 4 322 378 64 23 chr15 12870550 12870722 -72825032 + L2 LINE L2 3085 3263 -9 2041 113 3 3 chr15 12870935 12871226 -72824528 + AluSx SINE Alu 1 291 -21 647 286 148 24 chr15 12873282 12873659 -72822095 + Charlie2b DNA MER1_type 2 425 -2437 429 290 21 14 chr15 12873672 12873817 -72821937 + Charlie2b DNA MER1_type 523 668 -2114 3054 223 72 92 chr15 12873923 12875334 -72820420 + Charlie2a DNA MER1_type 1469 2850 -12 790 262 22 56 chr15 12876035 12876302 -72819452 - MIR SINE MIR -1 261 4 22 0 0 0 chr15 12878263 12878285 -72817469 + AT_rich Low_complexity Low_complexity 1 22 0 279 306 90 99 chr15 12880693 12881271 -72814483 + L2 LINE L2 1763 2335 -979 310 274 24 12 chr15 12881566 12881650 -72814104 - L2 LINE L2 0 3313 3229 352 208 76 69 chr15 12881669 12881813 -72813941 + MIR SINE MIR 118 262 0 243 325 46 46 chr15 12882145 12882296 -72813458 - MIR SINE MIR -92 170 20 25 90 0 0 chr15 12883255 12883322 -72812432 + AT_rich Low_complexity Low_complexity 1 67 0 629 174 61 38 chr15 12883640 12883772 -72811982 - AluJo SINE Alu -177 135 1 192 161 0 0 chr15 12885090 12885121 -72810633 + L3b LINE CR1 1334 1364 -219 709 279 73 20 chr15 12885316 12885563 -72810191 + MIR SINE MIR 2 261 -1 219 192 356 0 chr15 12886270 12886343 -72809411 - MIR SINE MIR -1 261 163 664 289 104 20 chr15 12886429 12886786 -72808968 + L2 LINE L2 2474 2860 -454 182 167 0 24 chr15 12887402 12887444 -72808310 + (CAT)n Simple_repeat Simple_repeat 2 42 0 336 283 272 16 chr15 12887445 12887629 -72808125 - MIR SINE MIR -1 261 31 868 123 0 48 chr15 12887718 12887864 -72807890 - MER1B DNA MER1_type -1 338 200 876 61 0 53 chr15 12887865 12887977 -72807777 + LTR10C LTR ERV1 1 107 -484 2180 114 3 0 chr15 12887977 12888275 -72807479 - AluSq SINE Alu -14 299 1 876 61 0 53 chr15 12888275 12888294 -72807460 + LTR10C LTR ERV1 107 125 -466 772 162 86 52 chr15 12890101 12890311 -72805443 - MER46A DNA MER2_type -19 217 1 * 833 148 67 13 chr15 12890176 12890325 -72805429 + MER46A DNA MER2_type 3 159 -77 253 304 59 20 chr15 12890329 12890431 -72805323 - MIR SINE MIR -108 154 49 251 327 50 20 chr15 12891808 12891909 -72803845 - L2 LINE L2 -3 3310 3207 439 310 95 0 chr15 12893438 12893596 -72802158 - MIR3 SINE MIR -12 196 24 334 333 76 20 chr15 12894476 12894674 -72801080 - MIR SINE MIR -13 249 41 1617 173 52 9 chr15 12894986 12895228 -72800526 + MER44D DNA MER2_type 1 231 -2260 1284 194 107 28 chr15 12895228 12895547 -72800207 - MER2 DNA MER2_type 0 344 1 1617 173 52 9 chr15 12895547 12895628 -72800126 + MER44D DNA MER2_type 231 608 -1 2106 150 28 3 chr15 12895669 12896023 -72799731 - MLT1A1 LTR MaLR -2 363 1 892 209 19 14 chr15 12896128 12896338 -72799416 - L1MD2 LINE L1 -2 6357 6147 5837 164 18 6 chr15 12896843 12898594 -72797160 - L1MA9 LINE L1 -2 6310 4538 5223 164 32 25 chr15 12898592 12899500 -72796254 + L1 LINE L1 3392 4311 -1835 * 2295 81 10 0 chr15 12899500 12899796 -72795958 + AluSp SINE Alu 1 299 -14 5223 164 32 25 chr15 12899796 12900005 -72795749 + L1 LINE L1 4311 4517 -1629 906 280 8 4 chr15 12900242 12900478 -72795276 + MIR SINE MIR 8 244 -18 322 39 39 0 chr15 12900709 12900761 -72794993 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 9953 24 8 0 chr15 12900761 12902706 -72793048 - L1PA2 LINE L1 -13 6142 4189 611 206 48 102 chr15 12902710 12903027 -72792727 + MLT2B1 LTR ERVL 156 520 0 427 290 142 0 chr15 12903059 12903221 -72792533 - MIR SINE MIR -75 187 3 268 361 45 7 chr15 12903269 12903424 -72792330 - L2 LINE L2 -1449 1865 1705 278 31 0 0 chr15 12904252 12904284 -72791470 + (T)n Simple_repeat Simple_repeat 1 32 0 275 300 80 21 chr15 12905407 12905539 -72790215 - MIR SINE MIR -63 145 18 2152 159 6 6 chr15 12907366 12907730 -72788024 + MER47A DNA MER2_type 3 366 0 737 195 65 50 chr15 12908640 12908840 -72786914 - MER3 DNA MER1_type 0 209 7 1922 92 0 46 chr15 12909008 12909290 -72786464 - AluSx SINE Alu -1 311 43 232 214 102 51 chr15 12911056 12911154 -72784600 + L2 LINE L2 3202 3304 -9 191 327 102 51 chr15 12911221 12911536 -72784218 + L2 LINE L2 2935 3265 -48 387 312 0 9 chr15 12912291 12912400 -72783354 + MIR SINE MIR 15 122 -140 26 30 0 0 chr15 12913209 12913242 -72782512 + AT_rich Low_complexity Low_complexity 1 33 0 339 25 0 0 chr15 12913335 12913375 -72782379 + (TG)n Simple_repeat Simple_repeat 1 40 0 263 328 10 26 chr15 12913524 12913716 -72782038 - L1ME3A LINE L1 -200 5970 5782 317 236 110 110 chr15 12913733 12913915 -72781839 - L1ME3A LINE L1 -485 5685 5504 2437 50 0 3 chr15 12914867 12915165 -72780589 - AluY SINE Alu -13 298 2 425 240 60 43 chr15 12915233 12915403 -72780351 + LTR33 LTR ERVL 6 214 -307 2182 77 0 4 chr15 12915523 12915818 -72779936 - AluSq SINE Alu 0 307 14 23 33 0 0 chr15 12915843 12915873 -72779881 + AT_rich Low_complexity Low_complexity 1 30 0 475 293 14 7 chr15 12915948 12916088 -72779666 + MIR SINE MIR 117 257 -5 301 311 233 16 chr15 12916291 12916484 -72779270 + MIR SINE MIR 28 262 0 21 0 0 0 chr15 12917389 12917410 -72778344 + AT_rich Low_complexity Low_complexity 1 21 0 231 283 138 31 chr15 12918287 12918446 -72777308 - MIR3 SINE MIR -17 191 16 2258 116 0 0 chr15 12919175 12919478 -72776276 + AluSx SINE Alu 1 303 -9 246 341 11 0 chr15 12919533 12919621 -72776133 + L1ME LINE L1 5550 5638 -483 2319 90 3 0 chr15 12919666 12919976 -72775778 + AluY SINE Alu 1 311 0 195 257 165 9 chr15 12920027 12920136 -72775618 + MIR SINE MIR 121 246 -16 1759 157 11 0 chr15 12920140 12920449 -72775305 - AluJo SINE Alu 0 312 1 245 276 65 70 chr15 12920495 12920709 -72775045 - L2 LINE L2 -338 2976 2764 * 314 231 130 9 chr15 12920690 12920798 -72774956 + L2 LINE L2 3141 3261 -52 429 153 46 84 chr15 12920798 12921056 -72774698 + MER33 DNA MER1_type 1 345 -18 248 204 0 0 chr15 12921081 12921125 -72774629 + L2 LINE L2 3229 3272 0 277 284 52 60 chr15 12922443 12922577 -72773177 - MIR SINE MIR -6 256 124 2231 230 59 1 chr15 12922776 12923461 -72772293 - L1MCc LINE L1 -3223 3718 3015 1283 175 130 39 chr15 12923528 12923859 -72771895 - MLT1A1 LTR MaLR -4 361 1 3387 238 99 4 chr15 12923859 12924617 -72771137 - MLT1A1-int LTR MaLR 0 1735 906 887 263 37 21 chr15 12924651 12925031 -72770723 - L1MCc LINE L1 -4123 2999 2614 29 78 0 0 chr15 12925136 12925200 -72770554 + AT_rich Low_complexity Low_complexity 1 64 0 1563 300 53 30 chr15 12925265 12926625 -72769129 - L1MCc LINE L1 -4576 2546 954 335 250 33 11 chr15 12926713 12926805 -72768949 - L1MCc LINE L1 -5949 474 381 1539 150 93 42 chr15 12926807 12927161 -72768593 + THE1C LTR MaLR 1 372 -3 1025 242 58 4 chr15 12927183 12927460 -72768294 - L1MDa LINE L1 -3355 3185 2894 * 1479 222 151 65 chr15 12927452 12927956 -72767798 - L1MDa LINE L1 -5698 842 296 222 118 0 0 chr15 12927956 12927990 -72767764 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1502 135 0 4 chr15 12928016 12928246 -72767508 + L1MC1 LINE L1 776 1004 -5422 * 10732 216 37 20 chr15 12928245 12931710 -72764044 + L1MC1 LINE L1 1708 5114 -1332 414 0 0 0 chr15 12931710 12931756 -72763998 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 10732 216 37 20 chr15 12931756 12932136 -72763618 + L1MC1 LINE L1 5114 5608 -838 2157 125 0 3 chr15 12932136 12932432 -72763322 + AluSx SINE Alu 3 297 -15 10732 216 37 20 chr15 12932432 12932458 -72763296 + L1MC1 LINE L1 5608 5632 -814 2838 87 0 5 chr15 12932462 12932840 -72762914 - MLT2A1 LTR ERVL -68 376 1 4417 151 9 67 chr15 12932840 12933739 -72762015 + L1MC1 LINE L1 5627 6473 -140 207 282 77 94 chr15 12934105 12934222 -72761532 + L2 LINE L2 3155 3269 -3 1705 181 83 17 chr15 12934310 12934670 -72761084 + MLT1B LTR MaLR 1 384 -6 3345 139 15 26 chr15 12936085 12936618 -72759136 - MER1A DNA MER1_type 0 527 1 191 244 90 39 chr15 12937297 12937375 -72758379 - L2 LINE L2 -82 3231 3150 288 0 0 0 chr15 12939115 12939147 -72756607 + (CA)n Simple_repeat Simple_repeat 2 33 0 2239 78 20 0 chr15 12939368 12939662 -72756092 + AluSg SINE Alu 1 300 -10 738 237 191 127 chr15 12940227 12941248 -72754506 + MER52A LTR ERV1 670 1755 0 1571 137 0 9 chr15 12941797 12942024 -72753730 + AluJb SINE Alu 64 288 -24 23 0 0 0 chr15 12942586 12942609 -72753145 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr15 12942735 12942756 -72752998 + AT_rich Low_complexity Low_complexity 1 21 0 2126 215 34 22 chr15 12943852 12944346 -72751408 - MLT1D LTR MaLR 0 505 6 207 243 14 40 chr15 12944448 12944522 -72751232 + (TTTA)n Simple_repeat Simple_repeat 1 72 0 902 252 18 14 chr15 12944846 12945068 -72750686 + MER58A DNA MER1_type 2 224 0 531 322 96 57 chr15 12945208 12945665 -72750089 - MLT1L LTR MaLR -137 478 4 425 294 136 18 chr15 12945859 12946080 -72749674 + MIR SINE MIR 7 253 -9 270 305 153 0 chr15 12946506 12946624 -72749130 + L2 LINE L2 2511 2646 -668 2868 267 67 47 chr15 12946700 12948290 -72747464 + L1MEc LINE L1 22 1578 -4637 2736 103 0 26 chr15 12948290 12948719 -72747035 + L1MA3 LINE L1 5888 6305 0 2868 267 67 47 chr15 12948719 12949540 -72746214 + L1MEc LINE L1 1578 2381 -3834 2311 116 0 0 chr15 12949540 12949850 -72745904 - AluSx SINE Alu -2 310 1 2868 267 67 47 chr15 12949850 12951176 -72744578 + L1MEc LINE L1 2381 3750 -2465 1478 225 78 70 chr15 12951228 12952038 -72743716 + L1MEc LINE L1 4021 4836 -1379 722 251 106 71 chr15 12952248 12952682 -72743072 - L1MC5 LINE L1 -852 7109 6661 279 54 18 36 chr15 12952710 12952766 -72742988 + (TG)n Simple_repeat Simple_repeat 2 56 0 229 299 191 34 chr15 12953455 12953602 -72742152 - MIR SINE MIR 0 262 93 288 253 51 0 chr15 12953694 12953773 -72741981 - MIR SINE MIR -108 154 72 24 0 0 0 chr15 12954061 12954085 -72741669 + AT_rich Low_complexity Low_complexity 1 24 0 2010 122 0 4 chr15 12954128 12954440 -72741314 - AluSx SINE Alu 0 317 7 26 0 0 0 chr15 12954446 12954472 -72741282 + AT_rich Low_complexity Low_complexity 1 26 0 229 188 0 21 chr15 12957298 12957346 -72738408 - MLT1L LTR MaLR -536 79 33 981 304 19 4 chr15 12957683 12957940 -72737814 + MIR SINE MIR 2 262 0 541 338 49 52 chr15 12959304 12959467 -72736287 - L2 LINE L2 -12 3301 3139 1320 196 3 103 chr15 12959467 12959798 -72735956 + AluSx SINE Alu 2 299 -3 541 338 49 52 chr15 12959798 12960001 -72735753 - L2 LINE L2 -174 3139 2936 311 243 0 0 chr15 12960066 12960136 -72735618 - LTR33 LTR ERVL -62 459 390 1671 264 56 47 chr15 12960144 12960952 -72734802 + L1ME2 LINE L1 49 863 -5207 22 0 0 0 chr15 12960973 12960995 -72734759 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr15 12961030 12961059 -72734695 + AT_rich Low_complexity Low_complexity 1 29 0 33 25 0 0 chr15 12961130 12961170 -72734584 + AT_rich Low_complexity Low_complexity 1 40 0 545 237 38 48 chr15 12961352 12961556 -72734198 - MLT1E1 LTR MaLR -350 304 51 874 279 28 0 chr15 12961708 12961995 -72733759 + L1ME2 LINE L1 2312 2606 -3474 * 2890 241 68 58 chr15 12961983 12962756 -72732998 + L1ME2 LINE L1 3982 4746 -1352 579 29 0 0 chr15 12962756 12962825 -72732929 + (TA)n Simple_repeat Simple_repeat 1 69 0 2890 241 68 58 chr15 12962825 12963097 -72732657 + L1ME2 LINE L1 4746 5014 -1084 2055 113 3 56 chr15 12963097 12963417 -72732337 + AluSx SINE Alu 1 303 -9 2890 241 68 58 chr15 12963417 12964462 -72731292 + L1ME2 LINE L1 5014 6085 -13 318 278 30 96 chr15 12964505 12964735 -72731019 + L1MC4 LINE L1 7826 8040 -2 1822 129 32 63 chr15 12965214 12965562 -72730192 + MER1B DNA MER1_type 1 337 0 22 0 0 0 chr15 12966119 12966141 -72729613 + AT_rich Low_complexity Low_complexity 1 22 0 279 79 0 0 chr15 12967311 12967349 -72728405 + (CA)n Simple_repeat Simple_repeat 2 39 0 223 283 0 0 chr15 12968339 12968399 -72727355 + (TA)n Simple_repeat Simple_repeat 2 61 0 422 211 10 0 chr15 12968645 12968749 -72727005 + CT-rich Low_complexity Low_complexity 1 105 0 273 329 13 0 chr15 12969902 12969981 -72725773 - L2 LINE L2 0 3272 3193 228 377 102 34 chr15 12969998 12970438 -72725316 + L3b LINE CR1 1108 1577 -6 25 19 8 0 chr15 12971955 12972029 -72723725 + AT_rich Low_complexity Low_complexity 1 32 0 26 82 0 0 chr15 12975516 12975577 -72720177 + AT_rich Low_complexity Low_complexity 1 61 0 613 239 73 27 chr15 12975593 12975852 -72719902 - L1ME LINE L1 -351 5770 5500 1170 251 27 7 chr15 12976198 12976497 -72719257 + LTR40b LTR ERVL 1 305 -157 209 242 74 0 chr15 12976819 12976914 -72718840 + T-rich Low_complexity Low_complexity 2 103 0 379 323 58 32 chr15 12976924 12977217 -72718537 - MLT1L LTR MaLR -5 610 279 256 200 100 0 chr15 12977383 12977443 -72718311 - MLT1L LTR MaLR -538 77 12 520 323 83 0 chr15 12977826 12978043 -72717711 - MIR SINE MIR -24 238 4 16305 100 16 33 chr15 12978685 12981607 -72714147 + HERVH LTR ERV1 373 2995 -4718 924 135 20 0 chr15 12981586 12981734 -72714020 + HERVH LTR ERV1 3140 3290 -4423 * 3421 103 2 6 chr15 12981724 12982228 -72713526 + HERVH LTR ERV1 3492 3993 -3720 4330 148 0 1 chr15 12982231 12982893 -72712861 + HERVH LTR ERV1 4489 5149 -2564 1388 124 18 5 chr15 12982894 12983111 -72712643 + HERVH LTR ERV1 5600 5819 -1894 * 2605 68 45 13 chr15 12983109 12983489 -72712265 + HERVH LTR ERV1 7322 7713 0 1896 45 4 8 chr15 12983489 12983733 -72712021 + LTR7 LTR ERV1 1 243 -207 34 24 0 0 chr15 12983883 12983924 -72711830 + AT_rich Low_complexity Low_complexity 1 41 0 31 76 0 0 chr15 12984131 12984197 -72711557 + AT_rich Low_complexity Low_complexity 1 66 0 597 310 82 3 chr15 12984311 12984614 -72711140 - HAL1b LINE L1 -727 621 295 433 203 68 79 chr15 12984625 12984802 -72710952 + MER104 DNA MER2_type 3 177 -3 280 256 107 18 chr15 12984969 12985137 -72710617 - L1M4 LINE L1 -1822 4324 4142 2018 136 3 7 chr15 12987801 12988109 -72707645 + AluY SINE Alu 1 307 -4 1750 178 10 20 chr15 12988538 12988842 -72706912 + AluJb SINE Alu 1 301 -11 1930 202 18 30 chr15 12989348 12989839 -72705915 + L1P LINE L1 4829 5313 -833 * 3103 231 28 2 chr15 12989835 12990442 -72705312 + L1PA15-16 LINE L1 641 1263 -5586 4779 217 25 4 chr15 12990454 12991368 -72704386 + L1PA15-16 LINE L1 714 1646 -5203 207 115 0 66 chr15 12991368 12991429 -72704325 + (TA)n Simple_repeat Simple_repeat 1 57 0 530 55 98 0 chr15 12991443 12991606 -72704148 + (ATATG)n Simple_repeat Simple_repeat 2 180 0 238 105 58 35 chr15 12991638 12991724 -72704030 + (TA)n Simple_repeat Simple_repeat 2 89 0 7669 170 44 5 chr15 12991740 12993670 -72702084 + L1PA15-16 LINE L1 1663 3678 -3171 2800 145 16 42 chr15 12993771 12994210 -72701544 + MER6A DNA MER2_type 1 427 -438 2514 149 7 7 chr15 12994210 12994660 -72701094 + L1MA4 LINE L1 5848 6297 -3 2800 145 16 42 chr15 12994660 12994716 -72701038 + MER6A DNA MER2_type 427 483 -122 219 220 20 0 chr15 12994716 12994766 -72700988 + L2 LINE L2 3263 3313 0 24 32 0 0 chr15 12994902 12994933 -72700821 + AT_rich Low_complexity Low_complexity 1 31 0 291 238 106 13 chr15 12999380 12999531 -72696223 - L1ME4a LINE L1 -1 6120 5956 316 244 24 16 chr15 12999580 12999707 -72696047 - L1ME4a LINE L1 -253 5868 5741 1650 165 38 14 chr15 12999759 13000050 -72695704 + AluJo SINE Alu 1 298 -14 223 340 151 0 chr15 13002224 13002330 -72693424 + L2 LINE L2 3151 3272 0 201 219 31 0 chr15 13003418 13003482 -72692272 + (TA)n Simple_repeat Simple_repeat 2 67 0 23 0 0 0 chr15 13003653 13003676 -72692078 + AT_rich Low_complexity Low_complexity 1 23 0 413 259 18 22 chr15 13004139 13004321 -72691433 + L2 LINE L2 3017 3271 -1 733 292 58 19 chr15 13004864 13005227 -72690527 - L1ME4a LINE L1 -225 5896 5520 382 173 0 25 chr15 13006163 13006244 -72689510 + MER53 DNA DNA 110 188 -1 1923 124 0 0 chr15 13006316 13006589 -72689165 + AluSc SINE Alu 37 309 0 1063 222 69 121 chr15 13007249 13007830 -72687924 + L1ME3A LINE L1 5620 6170 0 22433 37 2 0 chr15 13008875 13012399 -72683355 - L1PA5 LINE L1 -4 6150 2625 2480 30 0 0 chr15 13012399 13012701 -72683053 + L1PA5 LINE L1 2331 2632 -3514 245 106 0 21 chr15 13014552 13014599 -72681155 + (GA)n Simple_repeat Simple_repeat 1 46 0 192 188 0 83 chr15 13016335 13016383 -72679371 + MIR3 SINE MIR 162 205 -3 351 292 110 26 chr15 13016892 13017046 -72678708 + MIR SINE MIR 23 189 -73 2312 117 16 19 chr15 13017140 13017516 -72678238 + THE1C LTR MaLR 1 375 0 240 291 31 47 chr15 13017963 13018090 -72677664 + MLT1L LTR MaLR 87 211 -404 405 283 84 50 chr15 13018563 13018760 -72676994 - L1ME4a LINE L1 -111 6010 5821 414 0 0 0 chr15 13018760 13018806 -72676948 + (TA)n Simple_repeat Simple_repeat 1 46 0 405 283 84 50 chr15 13018806 13018825 -72676929 - L1ME4a LINE L1 -300 5821 5804 2317 55 3 22 chr15 13018825 13019136 -72676618 - AluY SINE Alu -6 305 1 405 283 84 50 chr15 13019136 13019326 -72676428 - L1ME4a LINE L1 -317 5804 5582 1861 176 39 0 chr15 13019326 13019661 -72676093 - MER7A DNA MER2_type 0 346 1 405 283 84 50 chr15 13019661 13019729 -72676025 - L1ME4a LINE L1 -539 5582 5518 22 0 0 0 chr15 13021395 13021417 -72674337 + AT_rich Low_complexity Low_complexity 1 22 0 1942 131 21 0 chr15 13021547 13021838 -72673916 - AluSx SINE Alu -15 297 1 23 54 0 0 chr15 13022401 13022438 -72673316 + AT_rich Low_complexity Low_complexity 1 37 0 418 272 169 44 chr15 13022963 13023362 -72672392 + MLT1H LTR MaLR 17 539 -10 4975 129 9 14 chr15 13023825 13024610 -72671144 - L1PA15 LINE L1 -3 6162 5382 1166 341 7 2 chr15 13024678 13025091 -72670663 - ERVL LTR ERVL -891 4873 4459 6101 128 4 2 chr15 13025108 13026063 -72669691 - L1PA10 LINE L1 -996 5150 4194 6091 100 19 5 chr15 13026063 13027032 -72668722 + L1PA10 LINE L1 5177 6157 -11 450 0 0 0 chr15 13027032 13027082 -72668672 + (TA)n Simple_repeat Simple_repeat 2 51 0 397 227 64 118 chr15 13027133 13027336 -72668418 - ERVL LTR ERVL -1329 4325 4134 610 339 68 49 chr15 13027638 13028861 -72666893 - ERVL LTR ERVL -1878 3776 2527 254 326 43 0 chr15 13029403 13029495 -72666259 - LTR16C LTR ERVL -145 346 251 2130 131 3 0 chr15 13030390 13030688 -72665066 - AluSg SINE Alu -11 299 1 329 258 97 16 chr15 13031277 13031401 -72664353 - LTR67 LTR ERVL -26 531 398 10935 201 25 55 chr15 13031494 13032334 -72663420 - L1MC3 LINE L1 0 8203 7339 1983 144 3 6 chr15 13032334 13032647 -72663107 - AluJb SINE Alu 0 312 1 2487 119 8 3 chr15 13032655 13033017 -72662737 + THE1B LTR MaLR 1 364 0 10935 201 25 55 chr15 13033017 13033889 -72661865 - L1MC3 LINE L1 -871 7332 6435 1930 171 3 0 chr15 13033889 13034198 -72661556 - AluJb SINE Alu -2 310 1 10935 201 25 55 chr15 13034198 13034360 -72661394 - L1MC3 LINE L1 -1768 6435 6270 266 229 0 0 chr15 13034360 13034408 -72661346 - MER66B LTR ERV1 -141 345 298 10935 201 25 55 chr15 13034408 13036058 -72659696 - L1MC3 LINE L1 -1933 6270 4726 2448 224 34 40 chr15 13036061 13037184 -72658570 - L1MC3 LINE L1 -4851 1194 551 314 303 16 25 chr15 13037664 13037786 -72657968 - MIR SINE MIR -41 221 101 1251 300 36 16 chr15 13037803 13038299 -72657455 - L1MC3 LINE L1 -5539 506 1 548 344 122 22 chr15 13038613 13039185 -72656569 + L2 LINE L2 2689 3313 0 443 320 86 6 chr15 13039708 13039883 -72655871 - MIR SINE MIR -7 255 69 234 258 34 22 chr15 13040586 13040675 -72655079 + (CATA)n Simple_repeat Simple_repeat 3 92 0 623 296 62 22 chr15 13041094 13041452 -72654302 - L1M4 LINE L1 -2749 3397 3026 422 108 14 27 chr15 13041657 13041731 -72654023 - AluJo SINE Alu -15 297 225 202 275 29 14 chr15 13041731 13041800 -72653954 - MIR SINE MIR -70 192 123 1089 186 22 35 chr15 13041817 13042043 -72653711 - AluJo SINE Alu -89 223 1 236 292 17 33 chr15 13042046 13042166 -72653588 - L1M4 LINE L1 -3382 2764 2647 5577 165 33 7 chr15 13042355 13044102 -72651652 - L1PA16 LINE L1 0 6166 4377 804 241 113 14 chr15 13044340 13044631 -72651123 - MER5C DNA MER1_type 0 324 5 432 227 73 14 chr15 13044795 13045020 -72650734 - MER20B DNA MER1_type -284 499 236 1623 203 136 50 chr15 13047236 13047818 -72647936 - LTR27 LTR ERV1 -2 634 3 5675 66 5 0 chr15 13047886 13049038 -72646716 + L1PA7 LINE L1 4821 5976 -178 994 142 0 0 chr15 13049038 13049186 -72646568 - AluSq/x SINE Alu -163 149 2 46 78 0 0 chr15 13052036 13052138 -72643616 + AT_rich Low_complexity Low_complexity 1 102 0 257 303 21 56 chr15 13052674 13052816 -72642938 - L3b LINE CR1 -136 1447 1311 2054 55 7 41 chr15 13053418 13053748 -72642006 + AluY SINE Alu 1 320 0 304 97 43 0 chr15 13054289 13054341 -72641413 - MLT2B1 LTR ERVL 0 520 391 249 250 31 0 chr15 13054342 13054406 -72641348 + (TATG)n Simple_repeat Simple_repeat 1 66 0 225 108 0 0 chr15 13054413 13054450 -72641304 + (CA)n Simple_repeat Simple_repeat 2 38 0 1510 222 43 2 chr15 13054451 13054860 -72640894 - MLT2B1 LTR ERVL -40 480 2 2255 125 19 27 chr15 13054986 13055353 -72640401 + THE1B LTR MaLR 1 364 0 2148 139 64 79 chr15 13057645 13058484 -72637270 + MER21A LTR ERV1 14 902 -29 180 211 228 0 chr15 13059552 13059609 -72636145 + L2 LINE L2 3241 3310 -3 432 310 95 0 chr15 13060886 13061044 -72634710 - MIR3 SINE MIR -12 196 24 336 333 76 20 chr15 13061924 13062122 -72633632 - MIR SINE MIR -13 249 41 1628 173 52 9 chr15 13062434 13062676 -72633078 + MER44D DNA MER2_type 1 231 -2260 1294 194 107 28 chr15 13062676 13062995 -72632759 - MER2 DNA MER2_type 0 344 1 1628 173 52 9 chr15 13062995 13063076 -72632678 + MER44D DNA MER2_type 231 608 -1 2087 150 28 3 chr15 13063117 13063471 -72632283 - MLT1A1 LTR MaLR -2 363 1 946 200 19 14 chr15 13063576 13063786 -72631968 - L1MD2 LINE L1 -2 6357 6147 5884 164 18 6 chr15 13064291 13066044 -72629710 - L1MA9 LINE L1 -2 6310 4536 5327 162 32 25 chr15 13066040 13066948 -72628806 + L1 LINE L1 3392 4311 -1835 * 2259 81 10 0 chr15 13066948 13067244 -72628510 + AluSp SINE Alu 1 299 -14 5327 162 32 25 chr15 13067244 13067453 -72628301 + L1 LINE L1 4311 4517 -1629 913 280 8 4 chr15 13067690 13067926 -72627828 + MIR SINE MIR 8 244 -18 42646 34 21 1 chr15 13068152 13074225 -72621529 - L1PA3 LINE L1 0 6155 4 21 36 0 0 chr15 13074225 13074253 -72621501 + AT_rich Low_complexity Low_complexity 1 28 0 440 125 0 68 chr15 13074473 13074561 -72621193 - L1PA14 LINE L1 -2 6159 6078 23 33 0 0 chr15 13074767 13074797 -72620957 + AT_rich Low_complexity Low_complexity 1 30 0 208 139 0 0 chr15 13075255 13075291 -72620463 + (A)n Simple_repeat Simple_repeat 1 36 0 2522 97 40 0 chr15 13075545 13075895 -72619859 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr15 13076739 13076760 -72618994 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr15 13076863 13076885 -72618869 + AT_rich Low_complexity Low_complexity 1 22 0 707 283 59 69 chr15 13077709 13078931 -72616823 + L1ME3A LINE L1 719 2131 -4130 * 1992 259 63 61 chr15 13078921 13079145 -72616609 + L1ME3A LINE L1 5200 5422 -682 2420 75 0 0 chr15 13079145 13079440 -72616314 + AluY SINE Alu 1 295 -16 1992 259 63 61 chr15 13079440 13080106 -72615648 + L1ME3A LINE L1 5422 6092 -12 219 214 22 56 chr15 13080392 13080481 -72615273 + A-rich Low_complexity Low_complexity 3 88 0 187 329 114 0 chr15 13080601 13080680 -72615074 - L2 LINE L2 -19 3294 3207 1463 194 19 50 chr15 13081521 13081841 -72613913 + AluJo SINE Alu 1 310 -2 968 159 93 11 chr15 13081854 13082036 -72613718 - MER2 DNA MER2_type -135 210 14 207 182 0 0 chr15 13082305 13082338 -72613416 - L3 LINE CR1 -10 1567 1535 276 341 163 31 chr15 13082778 13083103 -72612651 - L3 LINE CR1 -145 1432 1065 807 237 45 0 chr15 13083515 13083692 -72612062 + MER58B DNA MER1_type 157 341 0 828 189 6 17 chr15 13085192 13085367 -72610387 - MER96B DNA MER1_type? -244 173 1 212 143 0 0 chr15 13085574 13085609 -72610145 + (TC)n Simple_repeat Simple_repeat 2 36 0 274 273 82 0 chr15 13085609 13085719 -72610035 - MER103 DNA DNA -46 120 2 1897 264 47 24 chr15 13085746 13086300 -72609454 - MLT1F1 LTR MaLR 0 567 1 378 254 80 85 chr15 13086452 13086676 -72609078 + MLT1K LTR MaLR 10 232 -356 319 249 110 64 chr15 13086757 13086930 -72608824 + MLT1K LTR MaLR 400 580 -8 23 0 0 0 chr15 13088374 13088397 -72607357 + AT_rich Low_complexity Low_complexity 1 23 0 793 116 8 0 chr15 13088450 13088571 -72607183 + L1MA1 LINE L1 6175 6296 -6 21 36 0 0 chr15 13088571 13088599 -72607155 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr15 13088758 13088784 -72606970 + AT_rich Low_complexity Low_complexity 1 26 0 187 403 126 0 chr15 13089781 13089900 -72605854 - L2 LINE L2 -571 2743 2610 201 39 0 0 chr15 13090764 13090790 -72604964 + (TG)n Simple_repeat Simple_repeat 1 26 0 465 284 144 58 chr15 13092150 13092512 -72603242 - L2 LINE L2 -47 3266 2874 21 36 0 0 chr15 13093333 13093361 -72602393 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr15 13094389 13094416 -72601338 + AT_rich Low_complexity Low_complexity 1 27 0 203 294 239 0 chr15 13094855 13094947 -72600807 - L2 LINE L2 0 3272 3159 221 357 82 10 chr15 13095811 13095909 -72599845 + L2 LINE L2 3149 3253 -19 254 296 28 37 chr15 13096067 13096175 -72599579 - MIR SINE MIR 0 262 156 241 313 82 34 chr15 13096415 13096623 -72599131 - L2 LINE L2 -1391 1923 1706 275 89 0 0 chr15 13096981 13097026 -72598728 - L1ME4a LINE L1 -14 6107 6063 345 294 177 40 chr15 13097235 13097562 -72598192 - L1ME4a LINE L1 -266 5924 5553 232 246 54 54 chr15 13097929 13098059 -72597695 - L1ME4a LINE L1 -1113 5102 4973 1247 266 28 8 chr15 13098301 13098695 -72597059 + L1MB7 LINE L1 5782 6183 -1 24 0 0 0 chr15 13098748 13098772 -72596982 + AT_rich Low_complexity Low_complexity 1 24 0 336 354 110 9 chr15 13099886 13100214 -72595540 - ERVL LTR ERVL -572 5192 4832 473 276 74 20 chr15 13100673 13100876 -72594878 - LTR16A LTR ERVL -41 409 196 284 287 43 9 chr15 13100991 13101106 -72594648 - ERVL LTR ERVL -1680 4084 3966 647 216 58 124 chr15 13101276 13101517 -72594237 - LTR40b LTR ERVL -237 225 1 774 271 63 25 chr15 13101519 13101950 -72593804 - L1ME4a LINE L1 -2358 3857 3411 650 291 81 19 chr15 13101975 13102405 -72593349 + L1M4 LINE L1 3953 4409 -1737 * 3432 241 70 29 chr15 13102394 13102894 -72592860 + L1MB3 LINE L1 4152 4630 -1536 231 36 0 0 chr15 13102894 13102922 -72592832 + (AATAG)n Simple_repeat Simple_repeat 4 31 0 3432 241 70 29 chr15 13102922 13103162 -72592592 + L1MB3 LINE L1 4630 4859 -1307 2150 144 30 25 chr15 13103162 13103524 -72592230 + THE1B LTR MaLR 1 364 0 3432 241 70 29 chr15 13103524 13104253 -72591501 + L1MB3 LINE L1 4859 5679 -487 37 0 0 0 chr15 13104664 13104701 -72591053 + AT_rich Low_complexity Low_complexity 1 37 0 268 250 208 30 chr15 13107042 13107210 -72588544 + MLT1K LTR MaLR 96 293 -295 866 273 105 20 chr15 13107211 13107772 -72587982 - L1M4 LINE L1 -1300 4846 4238 655 162 77 49 chr15 13107772 13108000 -72587754 - MER106B DNA MER1_type 0 1059 1 673 291 93 12 chr15 13108080 13108424 -72587330 - L1ME4a LINE L1 -4748 1648 1277 28 71 0 0 chr15 13109328 13109384 -72586370 + AT_rich Low_complexity Low_complexity 1 56 0 267 123 15 31 chr15 13109901 13109966 -72585788 + (TA)n Simple_repeat Simple_repeat 1 64 0 192 179 0 0 chr15 13110189 13110228 -72585526 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 283 275 101 7 chr15 13110555 13110693 -72585061 + L1ME4a LINE L1 5892 6042 -79 394 295 71 55 chr15 13111021 13111275 -72584479 + MER102b DNA MER1_type 82 339 -2 2115 153 75 23 chr15 13111421 13111481 -72584273 + L1MB3 LINE L1 5720 5775 -408 2504 114 22 0 chr15 13111481 13111848 -72583906 + THE1C LTR MaLR 1 375 0 2115 153 75 23 chr15 13111848 13112226 -72583528 + L1MB3 LINE L1 5775 6181 -2 243 125 0 0 chr15 13113675 13113715 -72582039 + (TC)n Simple_repeat Simple_repeat 2 41 0 222 298 0 0 chr15 13113716 13113773 -72581981 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 22 0 0 0 chr15 13114512 13114534 -72581220 + AT_rich Low_complexity Low_complexity 1 22 0 254 390 8 0 chr15 13114614 13114732 -72581022 - MIR3 SINE MIR -13 195 77 254 356 59 7 chr15 13115189 13115324 -72580430 - MIR SINE MIR -33 229 88 554 262 13 0 chr15 13115434 13115583 -72580171 - L1MA10 LINE L1 -1 6333 6183 * 4367 221 48 66 chr15 13115578 13116284 -72579470 - L1M4 LINE L1 -1563 4583 3866 1163 211 160 13 chr15 13116284 13116602 -72579152 + MLT1A1 LTR MaLR 1 365 0 4367 221 48 66 chr15 13116602 13116642 -72579112 - L1M4 LINE L1 -2280 3866 3827 1176 184 126 50 chr15 13116642 13116919 -72578835 - AluJo SINE Alu -4 298 1 4367 221 48 66 chr15 13116919 13117871 -72577883 - L1M4 LINE L1 -2319 3827 2915 1999 148 3 3 chr15 13117946 13118256 -72577498 + AluSx SINE Alu 3 312 0 247 356 0 0 chr15 13118606 13118693 -72577061 - L2 LINE L2 0 3313 3227 280 301 110 31 chr15 13118970 13119133 -72576621 + MIR SINE MIR 31 206 -56 466 356 97 25 chr15 13119257 13119805 -72575949 - L2 LINE L2 -467 2847 2261 254 381 83 40 chr15 13120352 13120677 -72575077 - L2 LINE L2 -16 3256 2918 238 276 48 57 chr15 13122576 13122681 -72573073 - L2 LINE L2 -5 3267 3164 23 33 0 0 chr15 13122718 13122748 -72573006 + AT_rich Low_complexity Low_complexity 1 30 0 7221 40 6 9 chr15 13123240 13124289 -72571465 + L1PA7 LINE L1 5106 6151 -3 4582 139 32 8 chr15 13125158 13125950 -72569804 - L1MA5A LINE L1 -5 6934 6124 3962 147 15 41 chr15 13125950 13126678 -72569076 - MER50 LTR ERV1 -25 709 1 13152 211 35 26 chr15 13126679 13128488 -72567266 - L1MA5A LINE L1 -743 6045 4254 198 71 0 0 chr15 13128488 13128516 -72567238 + (TG)n Simple_repeat Simple_repeat 2 29 0 13152 211 35 26 chr15 13128516 13128973 -72566781 - L1MA5A LINE L1 -2534 4254 3803 1675 169 6 29 chr15 13128973 13129286 -72566468 - AluJo SINE Alu -6 306 1 13152 211 35 26 chr15 13129286 13132190 -72563564 - L1MA5A LINE L1 -2985 3803 889 1487 236 92 36 chr15 13132252 13132739 -72563015 + LTR48B LTR ERV1 122 542 0 580 190 86 9 chr15 13133558 13133674 -72562080 - MER63 DNA MER1_type -311 751 1 473 242 168 0 chr15 13134356 13134505 -72561249 - MIR SINE MIR 0 262 89 21 36 0 0 chr15 13134992 13135020 -72560734 + AT_rich Low_complexity Low_complexity 1 28 0 380 269 162 78 chr15 13135567 13135838 -72559916 + MLT1I LTR MaLR 98 391 -18 27 0 0 0 chr15 13138271 13138298 -72557456 + AT_rich Low_complexity Low_complexity 1 27 0 240 273 15 0 chr15 13138522 13138588 -72557166 + (TG)n Simple_repeat Simple_repeat 2 68 0 197 316 63 0 chr15 13140037 13140132 -72555622 - MIR SINE MIR -97 165 65 1188 227 63 16 chr15 13140896 13141213 -72554541 - L1MC4 LINE L1 -1097 6945 6614 1164 241 48 38 chr15 13141305 13141954 -72553800 - L1MC4 LINE L1 -1190 6618 6041 1473 254 62 15 chr15 13142083 13142619 -72553135 - L1MC4 LINE L1 -1972 5836 5276 713 272 109 53 chr15 13142616 13143486 -72552268 - L1ME LINE L1 -611 5622 4688 * 225 178 0 0 chr15 13143527 13143572 -72552182 + (CA)n Simple_repeat Simple_repeat 1 45 0 796 242 73 10 chr15 13143572 13143861 -72551893 - L1ME LINE L1 -1522 4693 4387 699 81 30 0 chr15 13143952 13144051 -72551703 + LTR22B LTR ERVK 1 102 -390 34 55 0 0 chr15 13144506 13144561 -72551193 + AT_rich Low_complexity Low_complexity 1 55 0 6415 186 56 24 chr15 13144672 13146042 -72549712 + MER52A LTR ERV1 374 1755 0 704 291 97 31 chr15 13146046 13146758 -72548996 - L1ME LINE L1 -3202 3013 2255 339 314 133 48 chr15 13146824 13147133 -72548621 - L1ME LINE L1 -4188 2208 1874 1918 72 0 12 chr15 13147760 13148009 -72547745 - AluY SINE Alu -21 290 45 316 295 116 90 chr15 13148191 13148578 -72547176 - L1ME LINE L1 -5706 499 103 246 257 43 0 chr15 13149094 13149164 -72546590 - L1M4c LINE L1 -4389 2460 2388 400 279 91 90 chr15 13149241 13149811 -72545943 - L1M4c LINE L1 -4974 2055 1334 1440 287 53 9 chr15 13149851 13150287 -72545467 - LTR16C LTR ERVL -9 482 28 25 31 0 0 chr15 13150932 13150964 -72544790 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr15 13151818 13151841 -72543913 + AT_rich Low_complexity Low_complexity 1 23 0 256 368 101 33 chr15 13154011 13154348 -72541406 + L2 LINE L2 2397 2756 -558 23 0 0 0 chr15 13154640 13154663 -72541091 + AT_rich Low_complexity Low_complexity 1 23 0 223 234 0 0 chr15 13155097 13155144 -72540610 + (TG)n Simple_repeat Simple_repeat 2 48 0 1053 218 137 73 chr15 13155315 13155370 -72540384 - L1MEc LINE L1 -3346 2869 2819 2288 110 3 0 chr15 13155370 13155678 -72540076 + AluSx SINE Alu 3 311 -1 1053 218 137 73 chr15 13155678 13156199 -72539555 - L1MEc LINE L1 -3396 2819 2256 507 282 102 76 chr15 13156422 13157345 -72538409 - L1MEc LINE L1 -4590 1806 860 254 254 0 0 chr15 13158065 13158124 -72537630 - L1MEc LINE L1 -5952 253 195 279 307 147 37 chr15 13158849 13159067 -72536687 - MLT1L LTR MaLR 0 615 374 1536 216 74 29 chr15 13159815 13159836 -72535918 + L1MB7 LINE L1 5667 5686 -498 1881 131 180 11 chr15 13159836 13160202 -72535552 + MSTA LTR MaLR 1 428 0 1536 216 74 29 chr15 13160202 13160601 -72535153 + L1MB7 LINE L1 5686 6106 -78 349 228 30 20 chr15 13164622 13164723 -72531031 - MLT1I LTR MaLR 0 409 308 2146 153 3 0 chr15 13164864 13165204 -72530550 - pTR5 LTR ERV1 -2046 392 52 319 214 0 36 chr15 13165204 13165288 -72530466 - LTR30 LTR ERV1 -98 624 544 3336 153 49 33 chr15 13165293 13166094 -72529660 - pTR5 LTR ERV1 -417 2021 733 202 333 0 65 chr15 13166263 13166356 -72529398 - MIR SINE MIR -102 106 20 227 339 79 0 chr15 13166516 13166633 -72529121 - MIR SINE MIR -61 147 24 1085 135 53 19 chr15 13167051 13167259 -72528495 - L1PA8 LINE L1 -3 6169 5955 513 0 0 0 chr15 13168361 13168418 -72527336 + (TA)n Simple_repeat Simple_repeat 2 58 0 2341 94 0 10 chr15 13168418 13168717 -72527037 - AluSx SINE Alu -8 304 7 5212 94 12 6 chr15 13168885 13169617 -72526137 - L1PA11 LINE L1 -2 6172 5436 1544 69 0 5 chr15 13169617 13169894 -72525860 + L1P LINE L1 5152 5427 -734 183 403 73 21 chr15 13170055 13170343 -72525411 + L2 LINE L2 2386 2688 -626 2037 64 0 8 chr15 13170729 13170980 -72524774 + AluY SINE Alu 39 287 -24 230 250 0 0 chr15 13171637 13171709 -72524045 - L1MC4 LINE L1 -1336 6706 6635 223 27 27 27 chr15 13172930 13172967 -72522787 + (CAAAA)n Simple_repeat Simple_repeat 5 41 0 2060 126 0 10 chr15 13173489 13173790 -72521964 - AluSx SINE Alu -6 306 9 340 344 32 13 chr15 13173801 13173958 -72521796 - MIR SINE MIR -66 196 37 430 275 151 82 chr15 13174043 13174447 -72521307 + HAL1 LINE L1 1 432 -2075 1901 108 36 14 chr15 13174990 13175290 -72520464 + AluSx SINE Alu 1 306 0 1332 169 72 41 chr15 13175447 13175737 -72520017 - AluJb SINE Alu -3 299 1 443 176 29 0 chr15 13175737 13175839 -72519915 - L1MC3 LINE L1 -330 7455 7351 21 57 0 0 chr15 13175965 13176000 -72519754 + AT_rich Low_complexity Low_complexity 1 35 0 1842 279 91 42 chr15 13176010 13177062 -72518692 - L1M4 LINE L1 -1014 5132 3978 5450 131 24 5 chr15 13177062 13178413 -72517341 - L1PA13 LINE L1 -13 6150 4786 1842 279 91 42 chr15 13178413 13178903 -72516851 - L1M4 LINE L1 -2168 3978 3514 357 267 62 21 chr15 13179028 13179268 -72516486 - L1M4 LINE L1 -3056 3090 2841 432 0 0 0 chr15 13179304 13179352 -72516402 + (A)n Simple_repeat Simple_repeat 1 48 0 27 0 0 0 chr15 13179408 13179435 -72516319 + AT_rich Low_complexity Low_complexity 1 27 0 982 234 104 27 chr15 13179855 13180231 -72515523 + L1ME1 LINE L1 5759 6163 -3 775 283 86 29 chr15 13180238 13180769 -72514985 + L1ME3A LINE L1 4378 4955 -1191 2161 80 11 3 chr15 13180769 13181086 -72514668 + AluY SINE Alu 1 319 0 775 283 86 29 chr15 13181086 13181203 -72514551 + L1ME3A LINE L1 4955 5064 -1082 1186 254 143 25 chr15 13181210 13181811 -72513943 + L1ME3A LINE L1 5459 6160 -10 252 310 0 14 chr15 13182050 13182121 -72513633 + L2 LINE L2 3201 3270 -2 212 264 76 36 chr15 13182291 13182401 -72513353 + MER5A DNA MER1_type 27 150 -39 661 205 18 18 chr15 13183771 13184050 -72511704 + CT-rich Low_complexity Low_complexity 1 279 0 22 70 0 0 chr15 13184134 13184177 -72511577 + AT_rich Low_complexity Low_complexity 1 43 0 1753 163 40 9 chr15 13184861 13185211 -72510543 - L1PA16 LINE L1 -16 6150 5790 556 291 114 46 chr15 13186613 13187050 -72508704 + MLT1J LTR MaLR 1 467 -44 299 292 62 39 chr15 13189883 13190061 -72505693 - LTR33 LTR ERVL -65 456 275 254 258 42 58 chr15 13190825 13190945 -72504809 + L2 LINE L2 2974 3091 -181 239 333 0 15 chr15 13190977 13191043 -72504711 - MIR SINE MIR -175 87 23 32 26 0 0 chr15 13191802 13191841 -72503913 + AT_rich Low_complexity Low_complexity 1 39 0 549 279 97 19 chr15 13191844 13192344 -72503410 - L1MDb LINE L1 -4951 1607 1147 261 0 0 0 chr15 13192636 13192665 -72503089 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 562 335 31 0 chr15 13193223 13193384 -72502370 + MIR3 SINE MIR 32 197 -11 352 251 84 70 chr15 13194831 13195046 -72500708 - L1ME LINE L1 -335 5786 5569 23 0 0 0 chr15 13195089 13195112 -72500642 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr15 13196113 13196137 -72499617 + AT_rich Low_complexity Low_complexity 1 24 0 2653 135 9 32 chr15 13196968 13197406 -72498348 - LTR12 LTR ERV1 -234 480 53 227 280 0 0 chr15 13197406 13197456 -72498298 - LTR30 LTR ERV1 -670 52 3 1457 186 0 53 chr15 13198270 13198571 -72497183 + AluJo SINE Alu 1 285 -27 792 276 135 52 chr15 13198754 13199235 -72496519 + LTR33 LTR ERVL 1 521 0 296 125 0 18 chr15 13199321 13199377 -72496377 + (TG)n Simple_repeat Simple_repeat 2 56 0 2193 125 0 0 chr15 13199403 13199698 -72496056 + AluSx SINE Alu 5 299 -13 282 338 32 52 chr15 13200161 13200315 -72495439 + MER102b DNA MER1_type 152 302 -39 320 274 82 67 chr15 13200428 13200563 -72495191 - L2 LINE L2 0 3313 3177 14616 125 25 13 chr15 13200572 13202040 -72493714 + Tigger1 DNA MER2_type 93 1599 -819 2256 114 0 3 chr15 13202040 13202337 -72493417 + AluSq SINE Alu 1 296 -17 14616 125 25 13 chr15 13202337 13203167 -72492587 + Tigger1 DNA MER2_type 1599 2418 0 1690 250 67 13 chr15 13203168 13203760 -72491994 - L1M4c LINE L1 -4271 2375 1657 621 294 60 12 chr15 13203797 13204045 -72491709 - L1M4c LINE L1 -6275 267 8 22 94 0 0 chr15 13204049 13204113 -72491641 + AT_rich Low_complexity Low_complexity 1 64 0 3122 187 29 0 chr15 13204184 13204730 -72491024 - MER68 LTR ERV1 0 562 1 1694 197 34 21 chr15 13205365 13205750 -72490004 - MLT1B LTR MaLR 0 390 1 227 327 59 0 chr15 13206639 13206740 -72489014 + MER91C DNA MER1_type 34 140 0 194 283 76 83 chr15 13208347 13208492 -72487262 - MER5A DNA MER1_type -3 186 43 * 418 326 30 8 chr15 13208387 13208519 -72487235 + MER5A DNA MER1_type 55 189 0 532 210 29 29 chr15 13209189 13209327 -72486427 + MLT1A1 LTR MaLR 228 365 0 1159 197 20 63 chr15 13209330 13209567 -72486187 + MLT1C LTR MaLR 239 423 -5 26 30 0 0 chr15 13209892 13209925 -72485829 + AT_rich Low_complexity Low_complexity 1 33 0 200 176 0 0 chr15 13209970 13210004 -72485750 + (CA)n Simple_repeat Simple_repeat 1 34 0 258 81 0 0 chr15 13210077 13210114 -72485640 + (CA)n Simple_repeat Simple_repeat 2 38 0 499 269 48 0 chr15 13210121 13210329 -72485425 + L1MC4a LINE L1 5694 5911 -1897 31 44 0 0 chr15 13210518 13210563 -72485191 + AT_rich Low_complexity Low_complexity 1 45 0 315 272 88 80 chr15 13210583 13210833 -72484921 + L1ME4a LINE L1 5636 5887 -234 270 236 45 56 chr15 13212472 13212561 -72483193 + MIR SINE MIR 23 110 -152 2264 112 0 0 chr15 13212804 13213100 -72482654 - AluSg SINE Alu -12 298 3 2361 190 109 16 chr15 13213187 13213746 -72482008 - MER90 LTR ERV1 0 614 4 428 191 177 32 chr15 13213776 13213996 -72481758 + MER113 DNA MER1_type? 12 263 -258 298 212 153 59 chr15 13214589 13214707 -72481047 + MIR SINE MIR 70 198 -64 224 337 0 0 chr15 13215771 13215863 -72479891 + T-rich Low_complexity Low_complexity 1 92 0 937 178 59 5 chr15 13215916 13216135 -72479619 - L1MA4 LINE L1 -6 6294 6064 195 355 75 0 chr15 13216383 13216476 -72479278 + L2 LINE L2 3153 3252 -20 624 182 0 9 chr15 13216553 13216663 -72479091 - Tigger2a DNA MER2_type -325 109 1 22 35 0 0 chr15 13217480 13217509 -72478245 + AT_rich Low_complexity Low_complexity 1 29 0 233 125 78 47 chr15 13218253 13218381 -72477373 + (TATAA)n Simple_repeat Simple_repeat 3 134 0 * 239 233 30 15 chr15 13218288 13218421 -72477333 + (TA)n Simple_repeat Simple_repeat 1 135 0 291 225 28 0 chr15 13218555 13218626 -72477128 - LTR33A LTR ERVL 0 523 451 324 258 212 12 chr15 13218650 13218951 -72476803 - LTR50 LTR ERVL -322 473 38 1972 124 0 7 chr15 13219641 13219948 -72475806 + L1PA8 LINE L1 5868 6172 0 567 306 49 6 chr15 13220277 13220460 -72475294 + MIR SINE MIR 57 247 -15 289 116 0 0 chr15 13220823 13220866 -72474888 - tRNA-Gln-CAG tRNA tRNA -32 43 1 181 339 159 22 chr15 13221306 13221533 -72474221 + L2 LINE L2 2996 3253 -19 217 342 114 25 chr15 13222252 13222489 -72473265 + L2 LINE L2 2996 3253 -19 288 278 127 8 chr15 13223202 13223328 -72472426 - MIR SINE MIR -1 261 121 206 288 45 0 chr15 13223566 13223632 -72472122 - L2 LINE L2 0 3272 3204 746 203 14 0 chr15 13224210 13224358 -72471396 + MLT2B1 LTR ERVL 13 162 -358 4470 35 0 26 chr15 13224359 13224968 -72470786 - L1PA2 LINE L1 0 6155 5563 779 208 6 50 chr15 13225230 13225389 -72470365 + FRAM SINE Alu 3 154 -22 431 226 61 0 chr15 13225752 13225867 -72469887 - MER69A DNA AcHobo 0 177 56 197 394 0 39 chr15 13226035 13226139 -72469615 - L2 LINE L2 -182 3090 2991 239 282 26 26 chr15 13227830 13227908 -72467846 + MER5A DNA MER1_type 80 157 -32 819 173 0 0 chr15 13229495 13229628 -72466126 - FLAM_A SINE Alu 0 133 1 1720 159 32 15 chr15 13229643 13229982 -72465772 - L1MB3 LINE L1 -8 6175 5831 1485 110 17 0 chr15 13229983 13230219 -72465535 + L1P LINE L1 4837 5076 -1070 13347 205 32 14 chr15 13230352 13233156 -72462598 - L1M4 LINE L1 -906 5476 2528 1217 228 118 0 chr15 13233156 13233419 -72462335 + AluJo SINE Alu 1 294 -8 13347 205 32 14 chr15 13233419 13235973 -72459781 - L1M4 LINE L1 -3854 2528 21 2015 132 0 3 chr15 13236273 13236569 -72459185 + AluSx SINE Alu 1 295 -17 5853 169 34 13 chr15 13237986 13239499 -72456255 - L1MC1 LINE L1 0 6333 4787 233 179 0 18 chr15 13239960 13240016 -72455738 + CT-rich Low_complexity Low_complexity 4 58 0 2310 259 88 13 chr15 13240137 13241490 -72454264 + L1ME2 LINE L1 4699 6155 -9 205 193 53 0 chr15 13241499 13241556 -72454198 + (TA)n Simple_repeat Simple_repeat 2 61 0 8296 148 16 35 chr15 13241564 13243393 -72452361 + L1PA11 LINE L1 3882 5677 -497 1983 116 40 10 chr15 13243393 13243694 -72452060 - AluY SINE Alu -1 310 1 8296 148 16 35 chr15 13243694 13244177 -72451577 + L1PA11 LINE L1 5677 6168 -6 337 284 47 24 chr15 13244334 13244461 -72451293 + HAL1 LINE L1 1327 1456 -1051 299 368 7 0 chr15 13244528 13244664 -72451090 + HAL1 LINE L1 1578 1714 -793 25 51 0 0 chr15 13244742 13244781 -72450973 + AT_rich Low_complexity Low_complexity 1 39 0 339 186 133 9 chr15 13244852 13244965 -72450789 + L1M4 LINE L1 4303 4429 -1717 1476 138 22 4 chr15 13245305 13245536 -72450218 + MLT1C LTR MaLR 1 235 -232 594 222 15 44 chr15 13245543 13245735 -72450019 + MSTC LTR MaLR 3 183 -182 182 346 104 20 chr15 13297318 13297520 -72398234 + L2 LINE L2 2829 3047 -225 238 224 0 0 chr15 13297620 13297669 -72398085 + L2 LINE L2 3264 3312 -1 1720 153 47 10 chr15 13298416 13298717 -72397037 - AluJb SINE Alu 0 312 1 255 125 0 0 chr15 13298841 13298881 -72396873 + (CCTA)n Simple_repeat Simple_repeat 3 42 0 811 324 72 25 chr15 13298951 13299129 -72396625 + MLT1K LTR MaLR 111 279 -309 327 25 0 0 chr15 13299129 13299169 -72396585 + (TG)n Simple_repeat Simple_repeat 2 41 0 811 324 72 25 chr15 13299169 13299434 -72396320 + MLT1K LTR MaLR 279 575 -13 1015 184 0 0 chr15 13299439 13299602 -72396152 + FRAM SINE Alu 1 160 -16 2527 36 7 0 chr15 13301398 13301700 -72394054 + AluY SINE Alu 1 304 -7 23 0 0 0 chr15 13302066 13302089 -72393665 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 13302498 13302520 -72393234 + AT_rich Low_complexity Low_complexity 1 22 0 218 242 0 45 chr15 13303330 13303396 -72392358 + MIR SINE MIR 29 91 -171 204 194 0 0 chr15 13303398 13303434 -72392320 - MIR SINE MIR -60 148 113 195 42 0 0 chr15 13304407 13304431 -72391323 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 773 205 0 0 chr15 13304460 13304587 -72391167 - FAM SINE Alu -41 144 18 233 56 0 28 chr15 13304596 13304632 -72391122 + (TTG)n Simple_repeat Simple_repeat 2 36 0 679 171 41 7 chr15 13304803 13304949 -72390805 + L1MC4a LINE L1 7070 7220 -588 261 0 0 0 chr15 13305049 13305078 -72390676 + (TTATA)n Simple_repeat Simple_repeat 1 29 0 2226 80 7 3 chr15 13306505 13306791 -72388963 + AluY SINE Alu 1 287 -24 290 291 236 0 chr15 13307255 13307365 -72388389 - MIR SINE MIR -33 229 94 658 227 39 7 chr15 13308001 13308155 -72387599 + MER63A DNA MER1_type 52 210 0 726 258 18 109 chr15 13308166 13308496 -72387258 + MER102b DNA MER1_type 33 332 -9 183 309 124 31 chr15 13308523 13308620 -72387134 + MIR3 SINE MIR 64 169 -39 23 0 0 0 chr15 13310508 13310531 -72385223 + AT_rich Low_complexity Low_complexity 1 23 0 210 150 0 0 chr15 13310665 13310705 -72385049 + (A)n Simple_repeat Simple_repeat 1 40 0 1810 159 0 3 chr15 13311890 13312180 -72383574 - AluJo SINE Alu -23 289 1 204 228 0 0 chr15 13312550 13312607 -72383147 + CT-rich Low_complexity Low_complexity 4 60 0 258 56 0 0 chr15 13312695 13312731 -72383023 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr15 13313117 13313139 -72382615 + AT_rich Low_complexity Low_complexity 1 22 0 2325 79 3 0 chr15 13314236 13314528 -72381226 - AluSp SINE Alu -20 293 1 184 256 73 24 chr15 13314559 13314641 -72381113 + L2 LINE L2 2272 2357 -957 242 242 0 66 chr15 13315131 13315222 -72380532 - L1ME2 LINE L1 -1 6163 6079 274 358 138 31 chr15 13315713 13316227 -72379527 - L2 LINE L2 -511 2803 2235 488 323 88 18 chr15 13316250 13316467 -72379287 + LTR33 LTR ERVL 37 268 -253 528 194 105 0 chr15 13316551 13316675 -72379079 + LTR33 LTR ERVL 382 518 -3 203 299 165 29 chr15 13317030 13317381 -72378373 - L2 LINE L2 -1307 2007 1609 1567 197 32 46 chr15 13317388 13317619 -72378135 - MLT1A1 LTR MaLR 0 365 139 2153 142 132 5 chr15 13317619 13317999 -72377755 - MSTA LTR MaLR 0 428 1 1567 197 32 46 chr15 13317999 13318137 -72377617 - MLT1A1 LTR MaLR -226 139 1 2259 119 47 11 chr15 13318369 13318731 -72377023 - THE1C LTR MaLR 0 375 1 5184 117 19 7 chr15 13318731 13319482 -72376272 - THE1C-int LTR MaLR 0 1580 821 791 163 129 0 chr15 13319582 13319729 -72376025 + AluSc SINE Alu 130 295 -14 537 318 69 19 chr15 13319732 13319993 -72375761 - L2 LINE L2 -810 2504 2231 2201 96 4 0 chr15 13320000 13320307 -72375447 - AluSg SINE Alu 0 308 1 629 98 0 0 chr15 13320500 13320592 -72375162 + AluSc SINE Alu 173 264 -45 1348 91 23 0 chr15 13321613 13321789 -72373965 + AluSc SINE Alu 97 276 -33 1106 118 11 0 chr15 13321790 13321877 -72373877 + (GAAA)n Simple_repeat Simple_repeat 1 267 0 1106 118 11 0 chr15 13321877 13322055 -72373699 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2596 139 31 2 chr15 13322371 13322787 -72372967 - MSTA LTR MaLR 0 428 1 358 303 134 0 chr15 13322993 13323112 -72372642 - MIR SINE MIR -33 229 95 413 304 58 12 chr15 13323308 13323479 -72372275 + MIR SINE MIR 27 205 -57 2144 102 27 3 chr15 13323590 13323883 -72371871 - AluSg SINE Alu -10 300 1 841 279 126 17 chr15 13324618 13324923 -72370831 + MLT1J2 LTR MaLR 5 333 -113 231 36 0 0 chr15 13325422 13325450 -72370304 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 27 0 0 0 chr15 13325732 13325759 -72369995 + AT_rich Low_complexity Low_complexity 1 27 0 198 171 0 0 chr15 13326875 13326916 -72368838 + (CA)n Simple_repeat Simple_repeat 1 41 0 646 268 114 15 chr15 13329487 13329759 -72365995 + L1MC4a LINE L1 5613 5911 -1897 2156 113 6 16 chr15 13330719 13331030 -72364724 + AluSg SINE Alu 1 308 -2 1914 131 38 0 chr15 13331046 13331336 -72364418 + AluSx SINE Alu 1 301 -11 192 314 128 69 chr15 13331727 13331829 -72363925 + L2 LINE L2 3134 3241 -31 2313 109 3 0 chr15 13331833 13332135 -72363619 - AluSx SINE Alu -9 303 1 373 219 0 0 chr15 13332241 13332305 -72363449 + L2 LINE L2 3243 3306 -7 198 171 0 0 chr15 13332311 13332352 -72363402 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 1274 189 60 0 chr15 13334261 13334563 -72361191 - MER33 DNA MER1_type -4 320 1 514 202 11 0 chr15 13335923 13336017 -72359737 + FLAM_A SINE Alu 2 96 -46 217 284 83 28 chr15 13336036 13336145 -72359609 - MIR SINE MIR 0 262 148 367 301 48 0 chr15 13336609 13336712 -72359042 - L2 LINE L2 -1 3312 3205 180 333 107 0 chr15 13336846 13336921 -72358833 - L2 LINE L2 -205 3067 2985 365 308 164 13 chr15 13336925 13337084 -72358670 + MER5A DNA MER1_type 7 189 0 738 299 211 16 chr15 13337107 13337719 -72358035 - L2 LINE L2 -354 2960 2230 2054 119 32 66 chr15 13339470 13339847 -72355907 - THE1B LTR MaLR 0 364 1 2232 99 0 7 chr15 13344072 13344366 -72351388 + AluSx SINE Alu 1 292 -20 21 36 0 0 chr15 13345332 13345360 -72350394 + AT_rich Low_complexity Low_complexity 1 28 0 898 238 31 39 chr15 13345579 13345865 -72349889 + L3b LINE CR1 1108 1391 -192 22 35 0 0 chr15 13346172 13346201 -72349553 + AT_rich Low_complexity Low_complexity 1 29 0 3950 126 70 3 chr15 13347717 13348342 -72347412 - THE1C-int LTR MaLR -912 668 2 1916 150 50 17 chr15 13348363 13348724 -72347030 - THE1C LTR MaLR -2 373 1 731 290 28 48 chr15 13349557 13349805 -72345949 + MIR SINE MIR 2 244 -18 1712 116 93 4 chr15 13349818 13350140 -72345614 - AluSg SINE Alu 0 345 1 261 262 122 28 chr15 13350352 13350459 -72345295 - MIR SINE MIR -132 130 14 22 35 0 0 chr15 13351128 13351157 -72344597 + AT_rich Low_complexity Low_complexity 1 29 0 721 238 12 42 chr15 13351533 13351701 -72344053 + MER63A DNA MER1_type 46 208 -2 394 308 122 35 chr15 13351732 13351904 -72343850 + MIR SINE MIR 47 233 -29 1519 183 3 7 chr15 13351927 13352216 -72343538 - L1MB7 LINE L1 -192 6490 6203 357 98 66 16 chr15 13352214 13352275 -72343479 + L1M4 LINE L1 4530 4593 -1553 * 378 208 0 0 chr15 13352290 13352362 -72343392 + L1M4 LINE L1 4829 4900 -1246 912 154 45 224 chr15 13352366 13352703 -72343051 - L1MB7 LINE L1 -627 6045 5650 1945 108 25 4 chr15 13352703 13353028 -72342726 - AluSq SINE Alu 0 331 1 912 154 45 224 chr15 13353028 13353329 -72342425 - L1MB7 LINE L1 -1022 5650 5297 511 86 0 0 chr15 13353329 13353399 -72342355 + AluS SINE Alu 1 70 -243 912 154 45 224 chr15 13353399 13353636 -72342118 - L1MB7 LINE L1 -1375 5297 5357 2156 117 7 0 chr15 13353636 13353934 -72341820 + AluSx SINE Alu 1 300 -12 912 154 45 224 chr15 13353934 13353960 -72341794 - L1MB7 LINE L1 -1314 5358 5329 4146 219 129 26 chr15 13353977 13354839 -72340915 - L1MB7 LINE L1 -1553 5091 4318 2198 100 0 30 chr15 13354839 13355140 -72340614 + AluSx SINE Alu 1 292 -20 4146 219 129 26 chr15 13355140 13355824 -72339930 - L1MB7 LINE L1 -2326 4318 3387 399 318 40 7 chr15 13355842 13355993 -72339761 - L1MB7 LINE L1 -6064 478 323 233 213 0 66 chr15 13356017 13356078 -72339676 - L1MB7 LINE L1 -6275 267 211 406 344 58 36 chr15 13356133 13356357 -72339397 + MIR SINE MIR 28 256 -6 297 361 52 16 chr15 13356522 13356713 -72339041 + MIR SINE MIR 2 199 -63 191 342 27 45 chr15 13357070 13357181 -72338573 - MIR SINE MIR -78 130 22 452 271 49 49 chr15 13357432 13357635 -72338119 - MLT1L LTR MaLR -60 555 353 2220 92 0 7 chr15 13360386 13360722 -72335032 - AluY SINE Alu 0 311 1 235 246 33 33 chr15 13360795 13360856 -72334898 - MIR SINE MIR -78 130 70 23 0 0 0 chr15 13361203 13361226 -72334528 + AT_rich Low_complexity Low_complexity 1 23 0 2358 68 10 0 chr15 13361616 13361924 -72333830 - AluY SINE Alu 0 311 1 480 35 0 0 chr15 13362466 13362524 -72333230 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 2125 110 0 40 chr15 13365062 13365361 -72330393 - AluSg SINE Alu -23 287 1 2211 95 3 0 chr15 13365439 13365723 -72330031 + AluSp SINE Alu 28 312 -1 22 0 0 0 chr15 13366824 13366846 -72328908 + AT_rich Low_complexity Low_complexity 1 22 0 340 298 74 54 chr15 13369711 13369969 -72325785 - MLT1J LTR MaLR -246 265 3 202 239 75 60 chr15 13370577 13370644 -72325110 - L2 LINE L2 0 3313 3246 262 299 43 43 chr15 13372176 13372293 -72323461 - MIR SINE MIR -63 145 29 536 125 0 45 chr15 13372426 13372514 -72323240 - AluJ/FLAM SINE Alu -228 84 1 1512 183 0 24 chr15 13372678 13372973 -72322781 + AluJb SINE Alu 1 288 -24 387 0 0 0 chr15 13372974 13373017 -72322737 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 3782 177 59 9 chr15 13373352 13374293 -72321461 + L1MB7 LINE L1 5176 6167 -17 180 111 0 0 chr15 13374392 13374419 -72321335 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 24 0 0 0 chr15 13376029 13376053 -72319701 + AT_rich Low_complexity Low_complexity 1 24 0 351 0 0 0 chr15 13377767 13377806 -72317948 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr15 13377928 13377950 -72317804 + AT_rich Low_complexity Low_complexity 1 22 0 275 246 71 40 chr15 13379191 13379228 -72316526 + MARNA DNA Mariner 127 161 -425 2197 62 13 52 chr15 13379228 13379534 -72316220 - AluY SINE Alu -17 294 1 275 246 71 40 chr15 13379534 13379622 -72316132 + MARNA DNA Mariner 161 256 -330 424 265 151 22 chr15 13380147 13380332 -72315422 - MIR SINE MIR 0 262 54 3334 154 62 34 chr15 13381160 13381759 -72313995 + MER39 LTR ERV1 1 623 -84 2083 146 34 17 chr15 13381759 13382116 -72313638 + THE1B LTR MaLR 1 363 -1 3334 154 62 34 chr15 13382116 13382199 -72313555 + MER39 LTR ERV1 623 702 -5 224 228 0 0 chr15 13382431 13382488 -72313266 + A-rich Low_complexity Low_complexity 3 59 0 233 313 46 30 chr15 13382623 13382754 -72313000 + L2 LINE L2 3179 3311 -2 266 246 0 15 chr15 13384189 13384254 -72311500 - MIR SINE MIR 0 262 199 21 0 0 0 chr15 13385101 13385122 -72310632 + AT_rich Low_complexity Low_complexity 1 21 0 834 326 78 49 chr15 13385899 13386607 -72309147 + L2 LINE L2 2365 3093 -179 1012 192 25 20 chr15 13386677 13386897 -72308857 + AluJo SINE Alu 85 305 0 1229 186 30 4 chr15 13387155 13387386 -72308368 + AluJo SINE Alu 67 303 -9 364 289 96 0 chr15 13387770 13387926 -72307828 + LTR33A LTR ERVL 226 396 -127 1955 143 0 0 chr15 13389441 13389721 -72306033 + AluSx SINE Alu 5 284 -28 24 53 0 0 chr15 13389965 13390003 -72305751 + AT_rich Low_complexity Low_complexity 1 38 0 2167 94 4 0 chr15 13390027 13390303 -72305451 + AluSp SINE Alu 17 293 -20 396 0 0 0 chr15 13390352 13390396 -72305358 + (CA)n Simple_repeat Simple_repeat 1 44 0 225 0 0 0 chr15 13390395 13390420 -72305334 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 311 0 0 25 chr15 13391379 13391419 -72304335 + (CA)n Simple_repeat Simple_repeat 2 40 0 2228 100 0 0 chr15 13392476 13392783 -72302971 + AluSg SINE Alu 1 307 0 189 268 0 0 chr15 13392877 13392918 -72302836 + MIR SINE MIR 108 148 -60 256 248 149 41 chr15 13392953 13393074 -72302680 - MIR SINE MIR -124 138 5 572 169 71 49 chr15 13393139 13393322 -72302432 - MER53 DNA DNA -2 187 1 278 298 106 0 chr15 13393417 13393521 -72302233 - MIR3 SINE MIR -9 199 85 2513 56 0 0 chr15 13393525 13393831 -72301923 - AluY SINE Alu -4 307 2 192 345 0 0 chr15 13394036 13394091 -72301663 + L2 LINE L2 3249 3303 -10 2043 121 10 0 chr15 13394441 13394731 -72301023 - AluSx SINE Alu -19 293 1 395 207 95 113 chr15 13395303 13395525 -72300229 - LTR16B LTR ERVL -2 462 245 26 0 0 0 chr15 13395638 13395664 -72300090 + AT_rich Low_complexity Low_complexity 1 26 0 1356 194 35 7 chr15 13395937 13396220 -72299534 + MLT1A1 LTR MaLR 72 362 -3 1428 218 65 56 chr15 13396234 13396756 -72298998 + L1ME3A LINE L1 5568 6094 -76 21 36 0 0 chr15 13396915 13396943 -72298811 + AT_rich Low_complexity Low_complexity 1 28 0 1096 219 23 0 chr15 13396977 13397196 -72298558 - 7SLRNA srpRNA srpRNA -96 224 1 329 245 119 95 chr15 13397219 13397247 -72298507 - L1MC4 LINE L1 -140 7902 7876 225 0 0 0 chr15 13397247 13397272 -72298482 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 2260 45 7 21 chr15 13397276 13397567 -72298187 - AluY SINE Alu -24 287 1 329 245 119 95 chr15 13397567 13397827 -72297927 - L1MC4 LINE L1 -168 7874 7602 475 248 34 0 chr15 13397865 13397982 -72297772 + L2 LINE L2 3193 3313 0 2362 104 0 0 chr15 13398012 13398321 -72297433 - AluSg SINE Alu 0 310 2 374 295 93 54 chr15 13399453 13399711 -72296043 + L1ME4a LINE L1 5791 6058 -63 190 321 0 0 chr15 13399832 13399888 -72295866 + MIR SINE MIR 106 161 -101 22 35 0 0 chr15 13399957 13399986 -72295768 + AT_rich Low_complexity Low_complexity 1 29 0 2377 100 0 0 chr15 13400108 13400409 -72295345 - AluSx SINE Alu -11 301 1 2256 94 34 0 chr15 13401045 13401343 -72294411 + AluSx SINE Alu 1 308 -4 948 252 110 0 chr15 13401589 13401879 -72293875 + MER5C DNA MER1_type 1 322 -2 329 316 13 33 chr15 13401926 13402078 -72293676 + MIR SINE MIR 112 260 -2 221 83 28 0 chr15 13402743 13402779 -72292975 + (CAATA)n Simple_repeat Simple_repeat 4 40 0 647 286 67 13 chr15 13402780 13403004 -72292750 + MIR SINE MIR 21 256 -6 222 324 141 22 chr15 13403213 13403398 -72292356 + L2 LINE L2 2836 3042 -230 975 76 0 0 chr15 13404154 13404285 -72291469 + L1PA8A LINE L1 5974 6104 -27 189 0 0 0 chr15 13404285 13404306 -72291448 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 634 277 52 56 chr15 13404798 13405029 -72290725 + MIR SINE MIR 13 242 -20 238 125 25 0 chr15 13405066 13405106 -72290648 + HSMAR1 DNA Mariner 1247 1287 0 1725 167 0 4 chr15 13405190 13405471 -72290283 + AluJo SINE Alu 3 282 -30 198 319 198 0 chr15 13405516 13405607 -72290147 - MIR SINE MIR -122 140 32 215 170 64 0 chr15 13405826 13405873 -72289881 - L2 LINE L2 -2 3311 3262 2604 20 7 0 chr15 13405933 13406228 -72289526 - AluY SINE Alu -14 297 1 206 276 86 0 chr15 13407811 13407869 -72287885 - MIR3 SINE MIR -30 178 116 221 236 0 36 chr15 13408466 13408521 -72287233 + T-rich Low_complexity Low_complexity 3 55 0 889 112 0 22 chr15 13408769 13408903 -72286851 + AluJo/FLAM SINE Alu 1 131 -171 324 162 0 108 chr15 13408903 13408977 -72286777 + AluSc SINE Alu 132 197 -102 * 4125 179 63 20 chr15 13408970 13409868 -72285886 - Charlie1a DNA MER1_type -517 938 2 395 295 118 67 chr15 13410077 13410511 -72285243 - L1 LINE L1 -747 5399 4944 276 308 19 19 chr15 13410604 13410711 -72285043 + MIR3 SINE MIR 97 203 -5 2203 119 73 24 chr15 13410735 13410908 -72284846 - MER6 DNA MER2_type 0 865 702 2377 88 0 0 chr15 13410908 13411215 -72284539 + AluY SINE Alu 1 307 -4 2203 119 73 24 chr15 13411215 13411411 -72284343 - MER6 DNA MER2_type -163 702 478 1159 194 0 9 chr15 13411411 13411628 -72284126 + AluJo SINE Alu 87 301 -11 698 125 18 0 chr15 13411629 13411741 -72284013 - MER6 DNA MER2_type -380 485 372 231 114 0 0 chr15 13411741 13411776 -72283978 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 22 35 0 0 chr15 13412819 13412848 -72282906 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr15 13412899 13412920 -72282834 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr15 13414826 13414849 -72280905 + AT_rich Low_complexity Low_complexity 1 23 0 296 368 18 18 chr15 13417571 13417685 -72278069 - L2 LINE L2 0 3272 3159 612 266 117 5 chr15 13417940 13418122 -72277632 + MIR SINE MIR 48 250 -12 344 327 0 0 chr15 13418122 13418223 -72277531 + MER5B DNA MER1_type 3 103 -75 33 56 0 0 chr15 13418260 13418314 -72277440 + AT_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr15 13419845 13419867 -72275887 + AT_rich Low_complexity Low_complexity 1 22 0 264 313 0 0 chr15 13420724 13420791 -72274963 + CT-rich Low_complexity Low_complexity 6 72 0 211 296 0 0 chr15 13421051 13421105 -72274649 + L2 LINE L2 3006 3059 -254 1258 276 75 41 chr15 13421292 13421846 -72273908 + MLT1F1 LTR MaLR 1 567 0 193 82 41 41 chr15 13422706 13422755 -72272999 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 25 65 0 0 chr15 13423713 13423759 -72271995 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr15 13424141 13424170 -72271584 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 13424205 13424227 -72271527 + AT_rich Low_complexity Low_complexity 1 22 0 205 369 18 0 chr15 13424402 13424513 -72271241 + L2 LINE L2 2249 2361 -953 2127 48 0 0 chr15 13424531 13424783 -72270971 - AluY SINE Alu -26 285 34 960 216 5 0 chr15 13424931 13425116 -72270638 - MER5A DNA MER1_type 0 189 4 2339 81 16 3 chr15 13425904 13426211 -72269543 + AluSp SINE Alu 1 311 -2 289 287 13 33 chr15 13427080 13427230 -72268524 + CT-rich Low_complexity Low_complexity 2 148 0 6951 142 31 6 chr15 13427605 13428783 -72266971 - Tigger3b DNA MER2_type 0 1231 25 21 0 0 0 chr15 13428818 13428839 -72266915 + AT_rich Low_complexity Low_complexity 1 21 0 2193 110 7 3 chr15 13428845 13429144 -72266610 - AluSx SINE Alu -11 301 2 252 350 60 17 chr15 13429454 13429571 -72266183 - MIR SINE MIR -66 142 21 1981 169 19 22 chr15 13429874 13430008 -72265746 + MLT1A1 LTR MaLR 1 134 -231 2809 80 3 11 chr15 13430008 13430385 -72265369 + THE1C LTR MaLR 2 375 0 1981 169 19 22 chr15 13430385 13430616 -72265138 + MLT1A1 LTR MaLR 134 365 0 316 218 82 9 chr15 13430818 13430928 -72264826 + L1MC4 LINE L1 7894 8011 -31 205 305 17 0 chr15 13431436 13431495 -72264259 + L2 LINE L2 3211 3270 -2 2230 96 7 0 chr15 13431871 13432164 -72263590 + AluSg SINE Alu 1 295 -15 899 164 7 13 chr15 13432176 13432328 -72263426 + FRAM SINE Alu 8 158 -18 313 259 254 9 chr15 13432503 13432698 -72263056 + MIR SINE MIR 8 259 -3 294 73 0 0 chr15 13433601 13433642 -72262112 + (TCCA)n Simple_repeat Simple_repeat 4 44 0 593 347 47 11 chr15 13434011 13434285 -72261469 + L3 LINE CR1 475 758 -819 231 88 0 0 chr15 13434307 13434341 -72261413 + (CA)n Simple_repeat Simple_repeat 1 34 0 38 39 0 0 chr15 13434631 13434683 -72261071 + AT_rich Low_complexity Low_complexity 1 52 0 254 262 0 0 chr15 13434807 13434868 -72260886 - MIR SINE MIR -66 196 136 219 69 0 0 chr15 13435051 13435080 -72260674 + (CA)n Simple_repeat Simple_repeat 2 30 0 2057 140 13 0 chr15 13435149 13435457 -72260297 + AluJo SINE Alu 1 312 0 306 333 188 27 chr15 13435465 13435726 -72260028 + L3 LINE CR1 1264 1566 -11 181 336 65 28 chr15 13436401 13436508 -72259246 - L2 LINE L2 -5 3267 3157 249 333 34 8 chr15 13436781 13436898 -72258856 - MIR3 SINE MIR -13 195 76 204 254 70 79 chr15 13437450 13437564 -72258190 - MIR SINE MIR -45 217 105 200 196 54 0 chr15 13438124 13438180 -72257574 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 772 207 0 27 chr15 13438512 13438662 -72257092 - FRAM SINE Alu -18 158 13 21 36 0 0 chr15 13438672 13438700 -72257054 + AT_rich Low_complexity Low_complexity 1 28 0 1935 129 7 34 chr15 13438711 13438862 -72256892 - AluSx SINE Alu -26 286 145 2832 7 0 0 chr15 13438862 13439167 -72256587 - AluY SINE Alu -6 305 1 1935 129 7 34 chr15 13439167 13439309 -72256445 - AluSx SINE Alu -167 145 1 769 144 32 0 chr15 13439329 13439454 -72256300 - FLAM_C SINE Alu -4 129 1 399 363 29 37 chr15 13439781 13440026 -72255728 + MIR SINE MIR 20 262 0 377 276 81 16 chr15 13440367 13440490 -72255264 - MIR SINE MIR -111 151 21 447 261 42 7 chr15 13440508 13440624 -72255130 + MIR SINE MIR 14 130 -78 2582 34 0 43 chr15 13440687 13441010 -72254744 - AluY SINE Alu 0 311 3 754 269 96 34 chr15 13441104 13441427 -72254327 + LTR16C LTR ERVL 149 491 0 457 284 133 15 chr15 13441940 13442204 -72253550 - L1ME4a LINE L1 0 6121 5827 291 303 162 0 chr15 13442298 13442440 -72253314 - L1ME4a LINE L1 -437 5684 5520 361 239 123 8 chr15 13444407 13444537 -72251217 + MIR SINE MIR 3 147 -115 406 318 54 50 chr15 13444610 13444849 -72250905 - MIR SINE MIR -12 250 11 195 388 11 56 chr15 13444924 13445102 -72250652 - MIR SINE MIR -86 176 7 14110 199 25 17 chr15 13445625 13448853 -72246901 + L1PB3 LINE L1 253 3583 -2628 2156 125 3 0 chr15 13448853 13449142 -72246612 + AluSg SINE Alu 1 290 -20 14110 199 25 17 chr15 13449142 13451789 -72243965 + L1PB3 LINE L1 3583 6209 -2 25 51 0 0 chr15 13451794 13451833 -72243921 + AT_rich Low_complexity Low_complexity 1 39 0 410 314 30 18 chr15 13451926 13452095 -72243659 + MER5B DNA MER1_type 8 178 0 2614 45 0 3 chr15 13452320 13452632 -72243122 - AluY SINE Alu 0 311 1 2074 135 0 0 chr15 13454957 13455253 -72240501 + AluSx SINE Alu 1 296 -16 345 100 0 0 chr15 13455412 13455462 -72240292 + (TG)n Simple_repeat Simple_repeat 1 50 0 713 170 27 112 chr15 13456673 13456896 -72238858 + MLT1D LTR MaLR 1 204 -301 220 136 51 0 chr15 13456937 13456996 -72238758 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 2306 136 53 5 chr15 13458043 13458440 -72237314 + L1PA16 LINE L1 5723 6138 -28 378 245 108 0 chr15 13459752 13459854 -72235900 + MER91A DNA MER1_type 57 169 -27 1022 176 73 30 chr15 13459992 13460225 -72235529 + MIR SINE MIR 18 260 -2 22 35 0 0 chr15 13460257 13460286 -72235468 + AT_rich Low_complexity Low_complexity 1 29 0 299 248 219 19 chr15 13461446 13461551 -72234203 + MIR SINE MIR 23 148 -60 377 293 190 57 chr15 13461561 13462056 -72233698 - L2 LINE L2 -15 3298 2742 1505 174 48 35 chr15 13462064 13462437 -72233317 - Charlie5 DNA MER1_type 0 2620 2243 691 164 8 0 chr15 13462444 13462566 -72233188 - Charlie5 DNA MER1_type -2489 123 1 306 278 105 80 chr15 13462572 13462692 -72233062 - L2 LINE L2 -571 2743 2628 1586 199 36 9 chr15 13462692 13463024 -72232730 - MER58B DNA MER1_type 0 341 1 306 278 105 80 chr15 13463024 13463216 -72232538 - L2 LINE L2 -686 2628 2423 218 259 37 0 chr15 13463206 13463260 -72232494 + MIR3 SINE MIR 151 206 -2 * 377 278 94 63 chr15 13465491 13465714 -72230040 - MIR SINE MIR -31 231 2 288 23 0 23 chr15 13466762 13466806 -72228948 - L1PA5 LINE L1 0 6154 6112 27 0 0 0 chr15 13467509 13467536 -72228218 + AT_rich Low_complexity Low_complexity 1 27 0 242 281 31 10 chr15 13467621 13467717 -72228037 - L1ME4a LINE L1 -43 6078 5981 24 0 0 0 chr15 13468214 13468238 -72227516 + AT_rich Low_complexity Low_complexity 1 24 0 301 286 141 72 chr15 13468407 13468669 -72227085 - HAL1 LINE L1 -707 1800 1521 2052 113 10 13 chr15 13468707 13469009 -72226745 - AluSq SINE Alu -1 312 12 180 125 0 0 chr15 13469033 13469065 -72226689 + (T)n Simple_repeat Simple_repeat 1 32 0 316 277 100 70 chr15 13469075 13469375 -72226379 - L1MEd LINE L1 -1206 1301 993 291 374 17 4 chr15 13469377 13469476 -72226278 - HAL1 LINE L1 -1465 1042 946 1780 183 0 7 chr15 13469476 13469777 -72225977 + AluJb SINE Alu 1 299 -13 291 374 17 4 chr15 13469777 13469907 -72225847 - HAL1 LINE L1 -1561 946 810 191 320 78 58 chr15 13470331 13470434 -72225320 + MIR SINE MIR 35 139 -123 842 166 12 12 chr15 13471032 13471201 -72224553 - L1MB8 LINE L1 -1 6177 6009 2146 193 2 2 chr15 13471203 13471622 -72224132 - L1MB8 LINE L1 -475 5709 5291 269 333 175 0 chr15 13476036 13476150 -72219604 - L2 LINE L2 0 3272 3139 192 328 16 0 chr15 13476226 13476290 -72219464 - MIR SINE MIR -23 239 175 23 0 0 0 chr15 13478379 13478402 -72217352 + AT_rich Low_complexity Low_complexity 1 23 0 2303 64 28 0 chr15 13478875 13479158 -72216596 + AluY SINE Alu 1 291 -20 525 296 102 22 chr15 13480806 13481032 -72214722 + MIR SINE MIR 17 260 -2 185 360 9 27 chr15 13482604 13482715 -72213039 + MIR SINE MIR 75 183 -79 29 47 0 0 chr15 13535744 13535787 -72159967 + AT_rich Low_complexity Low_complexity 1 43 0 360 354 29 11 chr15 13536004 13536179 -72159575 + LTR67 LTR ERVL 380 557 0 311 293 182 0 chr15 13536225 13536324 -72159430 + MIR SINE MIR 13 129 -133 2449 70 0 13 chr15 13537364 13537664 -72158090 + AluY SINE Alu 1 296 -15 500 114 0 0 chr15 13538167 13538237 -72157517 - MLT1A2 LTR MaLR 0 374 305 39 88 0 0 chr15 13538436 13538538 -72157216 + AT_rich Low_complexity Low_complexity 1 102 0 22 0 0 0 chr15 13540308 13540330 -72155424 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr15 13540403 13540424 -72155330 + AT_rich Low_complexity Low_complexity 1 21 0 1486 235 88 33 chr15 13540424 13540879 -72154875 - L1ME1 LINE L1 -17 6149 5670 514 219 30 48 chr15 13540893 13541092 -72154662 + MLT1D-int LTR MaLR 1233 1370 -1 1878 212 30 38 chr15 13541094 13541598 -72154156 + MLT1D LTR MaLR 2 501 -4 277 311 87 0 chr15 13542757 13542860 -72152894 - MIR3 SINE MIR -5 203 92 2171 164 37 39 chr15 13542981 13543413 -72152341 - MSTB1 LTR MaLR 0 432 2 3274 152 29 79 chr15 13543610 13544214 -72151540 - L1MB7 LINE L1 0 6184 5620 1802 162 0 14 chr15 13544214 13544498 -72151256 - AluJo SINE Alu -27 285 6 3274 152 29 79 chr15 13544498 13544611 -72151143 - L1MB7 LINE L1 -564 5620 5503 1161 231 106 3 chr15 13544628 13544948 -72150806 + LTR48 LTR ERV1 106 458 -329 456 191 95 83 chr15 13544946 13545114 -72150640 + LTR48 LTR ERV1 618 787 0 * 201 250 0 39 chr15 13545408 13545460 -72150294 - MIR3 SINE MIR -21 187 138 314 255 96 82 chr15 13545930 13546122 -72149632 - L1M4 LINE L1 -1426 4720 4532 1869 154 24 3 chr15 13546122 13546420 -72149334 - AluSx SINE Alu -8 304 1 314 255 96 82 chr15 13546420 13546517 -72149237 - L1M4 LINE L1 -1614 4532 4438 1912 129 20 3 chr15 13546517 13546811 -72148943 + AluSc SINE Alu 1 299 -10 314 255 96 82 chr15 13546811 13547081 -72148673 - L1M4 LINE L1 -1708 4438 4152 343 303 91 24 chr15 13547182 13547347 -72148407 - L1M4 LINE L1 -3171 2975 2800 1349 217 0 8 chr15 13547696 13547936 -72147818 - MER8 DNA MER2_type 0 239 2 604 301 82 27 chr15 13547969 13548484 -72147270 + L1ME3A LINE L1 800 1342 -4863 2416 87 0 0 chr15 13548639 13548948 -72146806 + AluY SINE Alu 1 309 -2 265 332 39 11 chr15 13549127 13549437 -72146317 + L1ME3A LINE L1 1968 2248 -3967 * 1094 252 133 2 chr15 13549420 13549840 -72145914 + L1ME3A LINE L1 4818 5292 -923 1018 260 138 10 chr15 13549843 13550250 -72145504 + L1ME3A LINE L1 5569 6027 -204 317 271 165 30 chr15 13550325 13550458 -72145296 + L1ME3A LINE L1 6057 6207 -32 21 0 0 0 chr15 13550467 13550488 -72145266 + AT_rich Low_complexity Low_complexity 1 21 0 182 220 40 20 chr15 13551102 13551152 -72144602 + MIR SINE MIR 79 129 -133 600 275 39 11 chr15 13551284 13551462 -72144292 + MIR SINE MIR 7 189 -73 1158 202 35 76 chr15 13551569 13551692 -72144062 - MER2 DNA MER2_type -7 338 212 1987 88 66 0 chr15 13551692 13551964 -72143790 + AluSx SINE Alu 1 290 -22 1158 202 35 76 chr15 13551964 13552182 -72143572 - MER2 DNA MER2_type -133 212 11 561 250 56 28 chr15 13553606 13553786 -72141968 - MLT1L LTR MaLR -72 543 359 342 0 0 0 chr15 13557863 13557901 -72137853 + (TG)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr15 13558281 13558302 -72137452 + AT_rich Low_complexity Low_complexity 1 21 0 228 86 0 0 chr15 13558783 13558818 -72136936 + (CA)n Simple_repeat Simple_repeat 2 36 0 1802 133 33 36 chr15 13559392 13559693 -72136061 - AluJo SINE Alu -12 300 1 22 35 0 0 chr15 13560135 13560164 -72135590 + AT_rich Low_complexity Low_complexity 1 29 0 2548 50 0 0 chr15 13560208 13560507 -72135247 - AluY SINE Alu -12 299 1 549 275 149 34 chr15 13560518 13560796 -72134958 - L1ME4a LINE L1 -70 6051 5806 2417 80 3 0 chr15 13560796 13561098 -72134656 - AluY SINE Alu -8 303 1 549 275 149 34 chr15 13561098 13561262 -72134492 - L1ME4a LINE L1 -315 5806 5558 1912 154 0 0 chr15 13562771 13563111 -72132643 - AluSx SINE Alu 0 340 1 1948 122 0 0 chr15 13563188 13563451 -72132303 + AluSx SINE Alu 40 302 -10 545 273 203 25 chr15 13564422 13564708 -72131046 + L2 LINE L2 2976 3312 -1 23 0 0 0 chr15 13565331 13565354 -72130400 + AT_rich Low_complexity Low_complexity 1 23 0 201 291 97 39 chr15 13565389 13565492 -72130262 - L2 LINE L2 -21 3292 3184 247 349 14 57 chr15 13565648 13565857 -72129897 - L2 LINE L2 -438 2876 2677 21 0 0 0 chr15 13567208 13567229 -72128525 + AT_rich Low_complexity Low_complexity 1 21 0 2323 100 0 6 chr15 13567682 13567993 -72127761 - AluSc SINE Alu 0 309 1 212 147 0 0 chr15 13570686 13570720 -72125034 + (GAAAA)n Simple_repeat Simple_repeat 4 37 0 21 0 0 0 chr15 13571149 13571170 -72124584 + AT_rich Low_complexity Low_complexity 1 21 0 277 171 14 14 chr15 13572286 13572356 -72123398 + T-rich Low_complexity Low_complexity 4 73 0 236 267 144 22 chr15 13575053 13575143 -72120611 - L2 LINE L2 -25 3247 3147 1103 122 113 50 chr15 13575167 13575388 -72120366 - MER46A DNA MER2_type 0 236 2 201 237 17 17 chr15 13575647 13575706 -72120048 - L2 LINE L2 -553 2761 2703 1648 94 31 20 chr15 13575753 13576008 -72119746 + THE1C LTR MaLR 1 258 -117 2451 55 3 0 chr15 13576923 13577214 -72118540 - AluY SINE Alu -19 292 1 21 0 0 0 chr15 13578191 13578212 -72117542 + AT_rich Low_complexity Low_complexity 1 21 0 775 269 123 0 chr15 13579212 13579439 -72116315 - MIR SINE MIR 0 262 8 306 260 115 10 chr15 13580752 13580856 -72114898 - MIR SINE MIR -96 166 52 226 309 12 0 chr15 13581028 13581109 -72114645 - L3b LINE CR1 -176 1407 1326 415 307 125 21 chr15 13581119 13581311 -72114443 + MIR SINE MIR 50 261 -1 2305 169 133 21 chr15 13581787 13582319 -72113435 - L1MD3 LINE L1 0 7995 7404 410 247 0 32 chr15 13582319 13582412 -72113342 - MLT1F1 LTR MaLR -442 125 36 257 202 173 0 chr15 13582419 13582523 -72113231 - L1MD3 LINE L1 -885 7110 6989 731 254 32 32 chr15 13584721 13584938 -72110816 - L2 LINE L2 -5 3308 3092 456 157 78 52 chr15 13589630 13589745 -72106009 + MER106B DNA MER1_type 939 1056 -3 194 264 65 83 chr15 13589779 13590038 -72105716 - L3 LINE CR1 -214 1363 1071 672 257 53 19 chr15 13591715 13591921 -72103833 - MIR SINE MIR -48 214 2 424 320 170 17 chr15 13592028 13592328 -72103426 + MLT1G1 LTR MaLR 175 520 -75 249 200 40 27 chr15 13593193 13593268 -72102486 + L1MEd LINE L1 495 570 -5549 545 298 83 25 chr15 13593695 13594322 -72101432 + L1MEd LINE L1 993 1748 -742 1778 201 87 69 chr15 13594401 13594437 -72101317 - MLT2B1 LTR ERVL -8 512 478 249 33 0 0 chr15 13594437 13594467 -72101287 + (TG)n Simple_repeat Simple_repeat 2 31 0 1778 201 87 69 chr15 13594467 13594860 -72100894 - MLT2B1 LTR ERVL -42 478 70 1525 183 42 23 chr15 13594860 13595166 -72100588 + AluJb SINE Alu 1 312 0 1778 201 87 69 chr15 13595166 13595228 -72100526 - MLT2B1 LTR ERVL -450 70 11 19745 22 2 2 chr15 13595520 13597876 -72097878 - L1PA3 LINE L1 -1067 5079 2724 7649 25 1 0 chr15 13597876 13598941 -72096813 + L1PA3 LINE L1 5090 6155 0 952 96 7 22 chr15 13598966 13599101 -72096653 + AluJb SINE Alu 1 133 -179 615 173 32 12 chr15 13599118 13599351 -72096403 + GA-rich Low_complexity Low_complexity 1 237 0 231 88 0 0 chr15 13599393 13599427 -72096327 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 227 225 81 50 chr15 13599594 13599754 -72096000 + L1MEd LINE L1 2132 2296 -3833 548 255 235 16 chr15 13599969 13600655 -72095099 + L1MEd LINE L1 2438 3273 -2856 2438 67 0 0 chr15 13602636 13602936 -72092818 - AluY SINE Alu -11 300 1 21 0 0 0 chr15 13607573 13607594 -72088160 + AT_rich Low_complexity Low_complexity 1 21 0 353 291 80 94 chr15 13607832 13607933 -72087821 + MIR SINE MIR 52 153 -109 2009 144 10 0 chr15 13607933 13608224 -72087530 + AluSq SINE Alu 1 294 -19 353 291 80 94 chr15 13608224 13608335 -72087419 + MIR SINE MIR 153 261 -1 504 209 225 11 chr15 13608385 13608571 -72087183 + MIR SINE MIR 25 251 -11 29 28 0 0 chr15 13608937 13608973 -72086781 + AT_rich Low_complexity Low_complexity 1 36 0 395 151 14 14 chr15 13609000 13609073 -72086681 - AluJ/FLAM SINE Alu -228 74 2 21 0 0 0 chr15 13609172 13609193 -72086561 + AT_rich Low_complexity Low_complexity 1 21 0 1809 149 0 55 chr15 13609199 13609508 -72086246 + AluJo SINE Alu 2 293 -19 21 0 0 0 chr15 13609807 13609828 -72085926 + AT_rich Low_complexity Low_complexity 1 21 0 227 323 181 38 chr15 13612362 13612495 -72083259 - L2 LINE L2 0 3272 3121 201 313 116 18 chr15 13612541 13612653 -72083101 - L2 LINE L2 0 3272 3150 1320 196 32 12 chr15 13613188 13613438 -72082316 + AluJo SINE Alu 28 282 -30 744 71 0 0 chr15 13613446 13613545 -72082209 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 630 249 62 85 chr15 13614958 13615263 -72080491 - MLT1K LTR MaLR -11 577 280 1835 119 7 63 chr15 13615287 13615589 -72080165 + AluJo SINE Alu 1 285 -27 391 120 0 63 chr15 13615626 13615801 -72079953 + (TA)n Simple_repeat Simple_repeat 2 165 0 188 309 0 0 chr15 13616266 13616308 -72079446 - L3b LINE CR1 -12 1571 1530 232 246 62 0 chr15 13617897 13617962 -72077792 + MIR3 SINE MIR 100 168 -40 2206 132 0 0 chr15 13618699 13619002 -72076752 + AluSx SINE Alu 1 303 -9 221 205 0 13 chr15 13619643 13619721 -72076033 + GA-rich Low_complexity Low_complexity 1 77 0 216 0 0 0 chr15 13620827 13620851 -72074903 + (T)n Simple_repeat Simple_repeat 1 24 0 27 62 0 0 chr15 13621705 13621753 -72074001 + AT_rich Low_complexity Low_complexity 1 48 0 2192 119 0 0 chr15 13624629 13624932 -72070822 - AluSg SINE Alu -7 303 1 351 264 151 19 chr15 13625864 13626023 -72069731 + MIR SINE MIR 49 228 -34 266 354 114 43 chr15 13626128 13626382 -72069372 + L2 LINE L2 2997 3268 -4 1738 297 103 23 chr15 13626811 13627430 -72068324 - MER115 DNA AcHobo -23 670 2 193 285 127 57 chr15 13628457 13628615 -72067139 + L3b LINE CR1 1164 1332 -251 320 274 111 17 chr15 13628903 13629020 -72066734 - MER5B DNA MER1_type -1 177 50 2486 243 48 54 chr15 13629538 13630451 -72065303 - L1ME1 LINE L1 -5 6230 5323 6649 221 63 34 chr15 13630452 13631321 -72064433 - L1ME1 LINE L1 -1200 5015 4172 1711 174 11 11 chr15 13631321 13631608 -72064146 + AluJo SINE Alu 12 298 -14 6649 221 63 34 chr15 13631608 13632603 -72063151 - L1ME1 LINE L1 -2043 4172 3207 316 0 45 0 chr15 13632603 13632647 -72063107 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 6649 221 63 34 chr15 13632647 13632659 -72063095 - L1ME1 LINE L1 -3008 3207 3197 6945 63 15 0 chr15 13632659 13633667 -72062087 - L1PA6 LINE L1 -13 6141 5130 6649 221 63 34 chr15 13633667 13634082 -72061672 - L1ME1 LINE L1 -3018 3197 2657 977 281 45 72 chr15 13634066 13634535 -72061219 - L1ME1 LINE L1 -5940 456 1 * 324 0 0 0 chr15 13634672 13634708 -72061046 + (TC)n Simple_repeat Simple_repeat 1 36 0 279 0 0 0 chr15 13635324 13635355 -72060399 + (TG)n Simple_repeat Simple_repeat 2 32 0 810 229 6 0 chr15 13635927 13636097 -72059657 - FRAM SINE Alu -5 171 1 679 270 38 11 chr15 13636309 13636494 -72059260 - MIR SINE MIR 0 262 73 413 324 77 45 chr15 13636483 13636730 -72059024 - L2 LINE L2 -553 2761 2507 * 22 0 0 0 chr15 13637746 13637768 -72057986 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr15 13639707 13639730 -72056024 + (A)n Simple_repeat Simple_repeat 1 23 0 180 111 0 0 chr15 13640909 13640936 -72054818 + (T)n Simple_repeat Simple_repeat 1 27 0 1989 138 0 7 chr15 13641046 13641342 -72054412 - AluSc SINE Alu -15 294 1 275 217 53 121 chr15 13644623 13644978 -72050776 + L1MC5 LINE L1 7452 7782 -179 21 0 0 0 chr15 13645134 13645155 -72050599 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr15 13646760 13646786 -72048968 + AT_rich Low_complexity Low_complexity 1 26 0 2409 86 0 3 chr15 13649253 13649556 -72046198 + AluSx SINE Alu 1 302 -10 1517 285 98 4 chr15 13650278 13650791 -72044963 + L2 LINE L2 1935 2495 -819 894 255 112 25 chr15 13650794 13651281 -72044473 + L2 LINE L2 2745 3290 -23 1307 215 3 44 chr15 13651479 13651814 -72043940 + AluJo SINE Alu 1 323 0 427 216 10 0 chr15 13652473 13652570 -72043184 - MER103 DNA DNA -68 98 1 319 307 106 17 chr15 13652796 13652975 -72042779 - MER102b DNA MER1_type -23 318 124 2326 94 0 0 chr15 13652975 13653273 -72042481 + AluSp SINE Alu 1 298 -15 1119 163 0 0 chr15 13653298 13653470 -72042284 - FRAM SINE Alu -5 171 1 2021 153 10 47 chr15 13653893 13654278 -72041476 - MLT1B LTR MaLR -5 385 15 205 311 93 43 chr15 13655090 13655251 -72040503 - L2 LINE L2 -1 3312 3144 272 329 180 0 chr15 13655486 13655647 -72040107 - L2 LINE L2 -467 2847 2658 1879 165 10 0 chr15 13655978 13656281 -72039473 + AluJb SINE Alu 1 306 -6 501 326 28 17 chr15 13656823 13657001 -72038753 - L2 LINE L2 -1 3312 3133 24 0 0 0 chr15 13657716 13657740 -72038014 + AT_rich Low_complexity Low_complexity 1 24 0 2254 108 0 0 chr15 13658052 13658347 -72037407 + AluSx SINE Alu 1 295 -17 261 0 0 0 chr15 13659038 13659067 -72036687 + (CA)n Simple_repeat Simple_repeat 1 29 0 1570 142 68 29 chr15 13659121 13659402 -72036352 - AluJb SINE Alu -5 307 16 199 248 144 96 chr15 13659900 13660025 -72035729 - MIR3 SINE MIR -7 201 71 369 287 176 37 chr15 13660380 13660596 -72035158 + MIR SINE MIR 2 247 -15 202 347 50 33 chr15 13661724 13661845 -72033909 - L3 LINE CR1 -1446 131 9 288 325 48 12 chr15 13662763 13662846 -72032908 - MIR SINE MIR -65 143 58 293 82 20 0 chr15 13663580 13663629 -72032125 + (TA)n Simple_repeat Simple_repeat 2 51 0 834 181 0 0 chr15 13663780 13663913 -72031841 + AluSq/x SINE Alu 1 133 -179 4442 66 12 13 chr15 13663928 13664530 -72031224 + L1PA10 LINE L1 5560 6160 -8 23 0 0 0 chr15 13665979 13666002 -72029752 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr15 13666935 13666955 -72028799 + (A)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr15 13668632 13668655 -72027099 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 23 0 0 0 chr15 13668962 13668985 -72026769 + AT_rich Low_complexity Low_complexity 1 23 0 3796 164 26 11 chr15 13669805 13670500 -72025254 + MER44D DNA MER2_type 1 705 0 327 185 0 0 chr15 13670778 13670832 -72024922 + MIR SINE MIR 93 146 -62 1920 147 118 11 chr15 13672001 13672383 -72023371 - MSTA LTR MaLR -5 423 1 348 299 101 19 chr15 13672386 13672593 -72023161 - L1ME4a LINE L1 -206 5915 5692 246 32 0 0 chr15 13673083 13673114 -72022640 + (TGG)n Simple_repeat Simple_repeat 1 31 0 433 273 30 20 chr15 13673114 13673312 -72022442 - L1ME4a LINE L1 -420 5701 5502 243 0 0 0 chr15 13674847 13674874 -72020880 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6892 32 6 0 chr15 13674874 13675736 -72020018 - L1PA5 LINE L1 -12 6142 5276 223 178 0 0 chr15 13676557 13676602 -72019152 + T-rich Low_complexity Low_complexity 1 45 0 1322 260 67 60 chr15 13677020 13677412 -72018342 + MLT1J LTR MaLR 12 409 -102 2239 128 0 0 chr15 13677412 13677724 -72018030 - AluSx SINE Alu 0 312 1 1322 260 67 60 chr15 13677724 13677827 -72017927 + MLT1J LTR MaLR 409 510 -1 21 57 0 0 chr15 13678001 13678036 -72017718 + AT_rich Low_complexity Low_complexity 1 35 0 5869 142 8 41 chr15 13678075 13679541 -72016213 - L1MA10 LINE L1 -3 6331 4915 244 324 72 36 chr15 13680606 13680745 -72015009 + MIR3 SINE MIR 21 164 -44 2605 158 15 24 chr15 13681542 13682010 -72013744 - MLT2C2 LTR ERVL 0 464 1 291 193 36 60 chr15 13682010 13682093 -72013661 - MIR SINE MIR -99 163 83 230 81 27 0 chr15 13682462 13682499 -72013255 + (TC)n Simple_repeat Simple_repeat 1 38 0 205 280 19 0 chr15 13682651 13682758 -72012996 + GA-rich Low_complexity Low_complexity 1 109 0 1911 135 3 3 chr15 13682810 13683117 -72012637 - AluSx SINE Alu 0 307 1 528 228 68 6 chr15 13683202 13683364 -72012390 + MER5B DNA MER1_type 1 172 -6 1326 43 0 0 chr15 13683572 13683733 -72012021 + L1PA7 LINE L1 5994 6154 0 411 217 151 0 chr15 13683781 13683887 -72011867 - MER5B DNA MER1_type -53 125 4 2187 93 3 3 chr15 13684025 13684315 -72011439 + AluSg SINE Alu 10 299 -11 826 265 45 19 chr15 13684521 13684834 -72010920 + MER46C DNA MER2_type 12 332 -6 960 195 19 10 chr15 13685668 13685873 -72009881 + MER3 DNA MER1_type 3 209 0 279 0 0 0 chr15 13686502 13686533 -72009221 + (TG)n Simple_repeat Simple_repeat 1 31 0 219 69 0 0 chr15 13688247 13688276 -72007478 + (TATG)n Simple_repeat Simple_repeat 2 30 0 257 264 0 0 chr15 13689908 13689961 -72005793 - L2 LINE L2 -7 3306 3254 1639 179 28 0 chr15 13689993 13690278 -72005476 - AluJb SINE Alu -18 294 2 268 203 0 17 chr15 13691521 13691580 -72004174 - MER117 DNA MER1_type -106 91 34 209 325 64 69 chr15 13691822 13692010 -72003744 - MER5A DNA MER1_type 0 189 3 252 212 141 35 chr15 13692033 13692118 -72003636 + MIR SINE MIR 30 123 -139 419 267 180 7 chr15 13693070 13693220 -72002534 - MIR SINE MIR -56 206 31 464 325 32 37 chr15 13693671 13693859 -72001895 - MIR3 SINE MIR -5 203 17 348 279 98 8 chr15 13694176 13694298 -72001456 - L2 LINE L2 -1 3271 3139 223 159 0 23 chr15 13696608 13696652 -71999102 + L2 LINE L2 3210 3252 -20 200 162 14 54 chr15 13700208 13700282 -71995472 + (TA)n Simple_repeat Simple_repeat 1 71 0 312 27 0 0 chr15 13700439 13700476 -71995278 + (TA)n Simple_repeat Simple_repeat 2 38 0 1525 156 4 0 chr15 13700476 13700714 -71995040 - AluSp SINE Alu -4 309 71 1579 141 28 4 chr15 13700866 13701115 -71994639 - AluJb SINE Alu -57 255 1 329 186 9 106 chr15 13702234 13702347 -71993407 - L2 LINE L2 -620 2694 2593 195 222 93 0 chr15 13703289 13703343 -71992411 + MIR SINE MIR 20 78 -184 1164 144 5 10 chr15 13703587 13703795 -71991959 - MLT1B LTR MaLR -183 207 1 387 308 86 0 chr15 13703855 13703972 -71991782 - MIR SINE MIR -124 138 12 2157 107 38 41 chr15 13704649 13705014 -71990740 + THE1B LTR MaLR 1 364 0 670 160 0 0 chr15 13705154 13705254 -71990500 - AluJ/FLAM SINE Alu -212 100 1 368 299 43 17 chr15 13705254 13705371 -71990383 + MIR SINE MIR 93 212 -50 398 294 6 69 chr15 13706080 13706240 -71989514 + MIR SINE MIR 57 206 -56 321 191 257 9 chr15 13706390 13706495 -71989259 + FLAM_C SINE Alu 2 132 -1 633 143 19 0 chr15 13706821 13706926 -71988828 - AluSx SINE Alu -15 294 188 1016 107 0 0 chr15 13706927 13707058 -71988696 - AluSx SINE Alu -181 132 2 225 226 0 0 chr15 13707060 13707113 -71988641 + L1ME2 LINE L1 6103 6155 -9 233 302 217 39 chr15 13708560 13708689 -71987065 + L2 LINE L2 3121 3272 0 200 162 14 54 chr15 13710437 13710511 -71985243 + (TA)n Simple_repeat Simple_repeat 1 71 0 312 27 0 0 chr15 13710668 13710705 -71985049 + (TA)n Simple_repeat Simple_repeat 1 37 0 1913 80 4 0 chr15 13710705 13710943 -71984811 - AluSp SINE Alu -4 309 71 233 193 0 6 chr15 13710943 13710998 -71984756 - AluSp SINE Alu -262 38 1 23 33 0 0 chr15 13711243 13711273 -71984481 + AT_rich Low_complexity Low_complexity 1 30 0 396 59 0 0 chr15 13712733 13712741 -71983013 + (TG)n Simple_repeat Simple_repeat 1 59 0 396 59 0 0 chr15 13712741 13712792 -71982962 + (TG)n Simple_repeat Simple_repeat 2 52 0 661 233 277 5 chr15 13713977 13714179 -71981575 + MIR SINE MIR 1 257 -5 246 146 18 73 chr15 13715051 13715106 -71980648 - L1M3 LINE L1 -386 5785 5734 3672 128 49 8 chr15 13715189 13715799 -71979955 + L1MA4A LINE L1 5662 6296 -7 830 225 18 0 chr15 13716078 13716247 -71979507 - FRAM SINE Alu -2 174 3 2276 102 0 0 chr15 13718080 13718373 -71977381 + AluSx SINE Alu 1 293 -19 198 0 0 0 chr15 13718408 13718430 -71977324 + (A)n Simple_repeat Simple_repeat 1 22 0 210 188 471 0 chr15 13718515 13718600 -71977154 - L2 LINE L2 -4 3309 3185 369 62 0 0 chr15 13721242 13721290 -71974464 + (TG)n Simple_repeat Simple_repeat 1 48 0 289 176 137 0 chr15 13721391 13721442 -71974312 + MER30 DNA MER1_type 173 230 0 678 195 7 7 chr15 13721767 13721916 -71973838 + L1MA6 LINE L1 5998 6146 -154 1583 108 16 12 chr15 13722689 13722947 -71972807 + L1MA4A LINE L1 6040 6298 -5 1307 143 0 0 chr15 13723134 13723343 -71972411 - L1PA13 LINE L1 -20 6143 5935 365 287 77 21 chr15 13723542 13723685 -71972069 - L2 LINE L2 -8 3305 3155 201 308 90 87 chr15 13725242 13725563 -71970191 + L2 LINE L2 2898 3219 -53 322 271 70 16 chr15 13725635 13725764 -71969990 + MIR SINE MIR 16 150 -71 1347 173 60 69 chr15 13726275 13726334 -71969420 - L1MB2 LINE L1 -1 6170 6112 2369 50 4 4 chr15 13726334 13726614 -71969140 - AluY SINE Alu -15 296 17 1347 173 60 69 chr15 13726614 13726901 -71968853 - L1MB2 LINE L1 -59 6112 5827 399 287 216 6 chr15 13727126 13727307 -71968447 - Charlie8 DNA MER1_type -2138 279 61 606 339 164 17 chr15 13727318 13727787 -71967967 - L3 LINE CR1 -107 1470 933 822 241 0 91 chr15 13727794 13728014 -71967740 + MIR SINE MIR 40 239 -23 225 292 62 88 chr15 13728240 13728353 -71967401 - L2 LINE L2 -26 3246 3137 2121 120 13 7 chr15 13728461 13728761 -71966993 - AluSx SINE Alu -10 302 1 216 0 0 0 chr15 13733823 13733847 -71961907 + (CA)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr15 13734009 13734031 -71961723 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr15 13737074 13737102 -71958652 + AT_rich Low_complexity Low_complexity 1 28 0 443 305 30 38 chr15 13737360 13737491 -71958263 + L2 LINE L2 3143 3272 0 183 302 19 0 chr15 13738404 13738457 -71957297 - L2 LINE L2 -13 3300 3247 246 62 0 0 chr15 13739159 13739191 -71956563 + (T)n Simple_repeat Simple_repeat 1 32 0 25 51 0 0 chr15 13739624 13739663 -71956091 + AT_rich Low_complexity Low_complexity 1 39 0 467 279 161 6 chr15 13742384 13742545 -71953209 - MIR3 SINE MIR -3 205 20 369 242 224 24 chr15 13743022 13743187 -71952567 + MIR SINE MIR 2 199 -63 22 0 0 0 chr15 13743250 13743272 -71952482 + AT_rich Low_complexity Low_complexity 1 22 0 35 0 0 0 chr15 13744380 13744415 -71951339 + AT_rich Low_complexity Low_complexity 1 35 0 2188 119 0 0 chr15 13744459 13744753 -71951001 + AluSx SINE Alu 1 294 -18 367 218 97 32 chr15 13745979 13746103 -71949651 + MLT1L LTR MaLR 378 613 -2 612 288 74 26 chr15 13746710 13746939 -71948815 + MIR SINE MIR 20 259 -3 391 311 17 17 chr15 13746908 13747027 -71948727 - MIR SINE MIR -80 182 64 * 416 316 78 48 chr15 13747094 13747489 -71948265 + MLT1I LTR MaLR 1 407 -2 21 0 0 0 chr15 13747826 13747847 -71947907 + AT_rich Low_complexity Low_complexity 1 21 0 3875 206 29 15 chr15 13747986 13748958 -71946796 + L1ME1 LINE L1 5177 6162 -4 1117 270 49 80 chr15 13749633 13749986 -71945768 + MLT1L LTR MaLR 82 413 -202 1425 203 7 3 chr15 13749986 13750272 -71945482 + AluJb SINE Alu 1 287 -25 1117 270 49 80 chr15 13750272 13750469 -71945285 + MLT1L LTR MaLR 413 615 0 23 33 0 0 chr15 13750580 13750610 -71945144 + AT_rich Low_complexity Low_complexity 1 30 0 615 160 59 0 chr15 13750617 13750736 -71945018 + L1MC3 LINE L1 7660 7785 0 282 264 50 30 chr15 13750912 13751022 -71944732 - MIR SINE MIR -65 143 43 22 0 0 0 chr15 13751609 13751631 -71944123 + AT_rich Low_complexity Low_complexity 1 22 0 263 215 231 8 chr15 13751909 13752030 -71943724 + Charlie7 DNA MER1_type 1 148 -2464 1321 185 0 5 chr15 13752619 13752830 -71942924 + AluJo SINE Alu 1 210 -102 213 94 0 0 chr15 13752850 13752882 -71942872 + (A)n Simple_repeat Simple_repeat 1 32 0 1420 127 164 44 chr15 13752897 13752917 -71942837 - MER47A DNA MER2_type -2015 308 292 2141 98 25 0 chr15 13752917 13753202 -71942552 - AluSc SINE Alu -17 292 1 1420 127 164 44 chr15 13753202 13753456 -71942298 - MER47A DNA MER2_type -2031 292 1 896 258 62 82 chr15 13753505 13753908 -71941846 - L2 LINE L2 -704 2610 2216 2385 88 0 0 chr15 13754005 13754302 -71941452 - AluSg1 SINE Alu -12 297 1 1237 211 40 16 chr15 13757085 13757426 -71938328 - MLT1C LTR MaLR -3 387 46 1229 201 29 69 chr15 13757864 13758212 -71937542 - MER46C DNA MER2_type 0 338 5 3346 213 35 21 chr15 13758943 13760217 -71935537 + L1ME LINE L1 4475 5780 -386 2142 198 61 11 chr15 13760563 13761008 -71934746 - MLT1C LTR MaLR 0 467 1 397 261 63 42 chr15 13761134 13761276 -71934478 - L2 LINE L2 0 3313 3169 223 253 11 92 chr15 13762313 13762400 -71933354 - L2 LINE L2 -984 2330 2251 947 139 186 26 chr15 13762580 13762774 -71932980 + AluJo SINE Alu 76 300 -12 825 266 91 33 chr15 13763119 13763450 -71932304 - MARNA DNA Mariner -9 577 228 402 153 117 34 chr15 13764122 13764366 -71931388 + AluJo SINE Alu 3 312 0 184 298 0 0 chr15 13767721 13767768 -71927986 - L2 LINE L2 -219 3053 3007 2255 223 106 14 chr15 13768804 13769610 -71926144 - L1MC4 LINE L1 -1 8041 7162 1283 124 4 100 chr15 13769611 13769780 -71925974 - AluJb SINE Alu 0 312 128 2180 116 0 10 chr15 13769780 13770081 -71925673 - AluSx SINE Alu -14 298 1 1283 124 4 100 chr15 13770081 13770096 -71925658 - AluJb SINE Alu -184 128 113 207 0 0 0 chr15 13770096 13770119 -71925635 + (TG)n Simple_repeat Simple_repeat 2 24 0 1283 124 4 100 chr15 13770119 13770183 -71925571 - AluJb SINE Alu -199 113 87 918 159 137 70 chr15 13770187 13770502 -71925252 - L1MC4 LINE L1 -868 7174 6839 460 299 61 0 chr15 13770512 13770659 -71925095 - MIR SINE MIR -44 218 63 229 301 0 27 chr15 13771181 13771254 -71924500 + L2 LINE L2 969 1039 -2275 2305 98 7 0 chr15 13771438 13771734 -71924020 + AluSg SINE Alu 1 298 -12 21 0 0 0 chr15 13775551 13775572 -71920182 + AT_rich Low_complexity Low_complexity 1 21 0 568 278 95 6 chr15 13775907 13776076 -71919678 + MIR SINE MIR 27 210 -52 209 167 0 48 chr15 13776495 13776537 -71919217 + L2 LINE L2 3192 3231 -82 478 225 132 8 chr15 13777138 13777267 -71918487 - MER5B DNA MER1_type -3 175 31 2193 137 23 8 chr15 13777928 13778315 -71917439 - MER57A LTR ERV1 -10 393 1 27 49 0 0 chr15 13778510 13778551 -71917203 + AT_rich Low_complexity Low_complexity 1 41 0 2547 41 3 22 chr15 13778792 13779109 -71916645 - AluY SINE Alu 0 311 1 832 289 14 10 chr15 13781248 13781539 -71914215 + L1ME1 LINE L1 399 690 -5706 * 3027 218 49 26 chr15 13781530 13781988 -71913766 + L1ME1 LINE L1 4745 5191 -1044 1667 191 10 7 chr15 13781988 13782282 -71913472 - AluJb SINE Alu -16 296 2 3027 218 49 26 chr15 13782282 13783276 -71912478 + L1ME1 LINE L1 5191 6230 -5 231 231 183 39 chr15 13783332 13783436 -71912318 + LTR33 LTR ERVL 6 124 -397 410 0 20 0 chr15 13783708 13783758 -71911996 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 243 258 25 50 chr15 13783928 13784048 -71911706 + L1ME3 LINE L1 2276 2392 -3823 1747 144 0 8 chr15 13784111 13784375 -71911379 + AluSq SINE Alu 1 262 -51 306 180 0 0 chr15 13784379 13784440 -71911314 + GA-rich Low_complexity Low_complexity 2 62 0 947 218 18 32 chr15 13784467 13784687 -71911067 + U3 snRNA snRNA 1 217 0 341 304 45 5 chr15 13784714 13784915 -71910839 + L1ME3 LINE L1 2487 2695 -3520 2274 255 24 16 chr15 13785082 13785345 -71910409 + L1ME3 LINE L1 5402 5662 -569 1573 162 86 19 chr15 13785345 13785660 -71910094 + MER44D DNA MER2_type 4 609 0 2274 255 24 16 chr15 13785660 13786071 -71909683 + L1ME3 LINE L1 5662 6081 -150 1628 142 10 26 chr15 13786116 13786419 -71909335 - L1MB1 LINE L1 -7 6161 5864 1982 144 0 0 chr15 13786419 13786753 -71909001 + L1MB1 LINE L1 5543 5876 -313 227 256 12 12 chr15 13786849 13786931 -71908823 + L1ME3 LINE L1 6149 6230 -1 425 314 51 4 chr15 13787076 13787312 -71908442 + L1MEc LINE L1 3702 3948 -2267 1575 290 62 27 chr15 13787317 13788309 -71907445 + L1MEc LINE L1 390 1415 -4981 297 120 0 0 chr15 13788380 13788430 -71907324 + L1ME1 LINE L1 5666 5715 -449 235 96 39 39 chr15 13788431 13788483 -71907271 + T-rich Low_complexity Low_complexity 4 55 0 721 98 32 0 chr15 13788501 13788624 -71907130 + C-rich Low_complexity Low_complexity 2 128 0 1662 194 3 13 chr15 13788624 13788938 -71906816 - AluJb SINE Alu -1 311 1 1336 213 84 29 chr15 13788938 13789388 -71906366 + L1ME1 LINE L1 5700 6331 -3 252 255 10 10 chr15 13789501 13789599 -71906155 + L1MEc LINE L1 4558 4655 -1560 554 152 0 22 chr15 13789966 13790058 -71905696 - AluJb SINE Alu -19 293 204 639 243 80 63 chr15 13792821 13792981 -71902773 - MIR SINE MIR 0 262 95 2211 84 42 0 chr15 13792981 13793267 -71902487 + AluSq SINE Alu 1 298 -15 639 243 80 63 chr15 13793267 13793345 -71902409 - MIR SINE MIR -167 95 20 872 324 108 38 chr15 13793852 13794594 -71901160 + L2 LINE L2 1167 1960 -1354 661 325 109 65 chr15 13794633 13795651 -71900103 - L2 LINE L2 -53 3219 2148 373 296 66 101 chr15 13795769 13796086 -71899668 + L2 LINE L2 2934 3239 -33 484 239 239 12 chr15 13796145 13796311 -71899443 - MIR3 SINE MIR 0 208 12 268 293 10 50 chr15 13796613 13796801 -71898953 - MIR SINE MIR 0 262 30 26 0 0 0 chr15 13797531 13797557 -71898197 + AT_rich Low_complexity Low_complexity 1 26 0 303 329 43 37 chr15 13798579 13798740 -71897014 + MIR3 SINE MIR 36 197 -11 195 162 0 0 chr15 13799916 13799953 -71895801 + A-rich Low_complexity Low_complexity 3 39 0 372 164 0 0 chr15 13801467 13801534 -71894220 + A-rich Low_complexity Low_complexity 1 67 0 186 73 73 0 chr15 13802061 13802102 -71893652 + GA-rich Low_complexity Low_complexity 1 44 0 345 62 0 0 chr15 13802885 13802933 -71892821 + (TG)n Simple_repeat Simple_repeat 1 48 0 197 176 0 39 chr15 13803799 13803850 -71891904 + GA-rich Low_complexity Low_complexity 6 54 0 260 243 14 0 chr15 13806209 13806279 -71889475 + (TA)n Simple_repeat Simple_repeat 2 72 0 396 0 0 0 chr15 13807331 13807375 -71888379 + (TG)n Simple_repeat Simple_repeat 2 45 0 186 43 0 0 chr15 13807795 13807818 -71887936 + (TTA)n Simple_repeat Simple_repeat 2 24 0 24 53 0 0 chr15 13812558 13812596 -71883158 + GC_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr15 13814634 13814657 -71881097 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 13818806 13818828 -71876926 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 13822652 13822674 -71873080 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr15 13823623 13823649 -71872105 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr15 13825830 13825852 -71869902 + AT_rich Low_complexity Low_complexity 1 22 0 633 240 80 25 chr15 13826125 13826325 -71869429 + MIR SINE MIR 46 256 -6 370 216 216 34 chr15 13826649 13826797 -71868957 + MER5A DNA MER1_type 15 189 0 21 0 0 0 chr15 13826960 13826981 -71868773 + AT_rich Low_complexity Low_complexity 1 21 0 31 44 0 0 chr15 13827124 13827169 -71868585 + AT_rich Low_complexity Low_complexity 1 45 0 238 246 0 18 chr15 13828958 13829015 -71866739 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 211 189 0 0 chr15 13829113 13829150 -71866604 + (CA)n Simple_repeat Simple_repeat 2 38 0 186 43 0 0 chr15 13830598 13830621 -71865133 + (A)n Simple_repeat Simple_repeat 1 23 0 2027 63 78 15 chr15 13832623 13832931 -71862823 + AluSp SINE Alu 1 325 0 289 343 123 37 chr15 13833048 13833348 -71862406 + L2 LINE L2 2945 3270 -2 1460 167 0 30 chr15 13833903 13834172 -71861582 + AluJb SINE Alu 34 294 -18 252 311 0 50 chr15 13834277 13834396 -71861358 + MER103 DNA DNA 9 121 -45 21 36 0 0 chr15 13834488 13834516 -71861238 + AT_rich Low_complexity Low_complexity 1 28 0 2401 66 3 3 chr15 13834715 13835016 -71860738 + AluSg SINE Alu 2 302 -8 195 42 0 0 chr15 13835220 13835244 -71860510 + (TG)n Simple_repeat Simple_repeat 2 25 0 * 254 140 0 20 chr15 13835239 13835289 -71860465 + (TA)n Simple_repeat Simple_repeat 1 49 0 225 197 0 66 chr15 13835393 13835469 -71860285 + GA-rich Low_complexity Low_complexity 3 73 0 204 40 0 0 chr15 13836781 13836806 -71858948 + (A)n Simple_repeat Simple_repeat 1 25 0 208 327 0 0 chr15 13837129 13837181 -71858573 + L2 LINE L2 3205 3256 -16 30 0 0 0 chr15 13837224 13837254 -71858500 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr15 13837536 13837557 -71858197 + AT_rich Low_complexity Low_complexity 1 21 0 2276 102 0 7 chr15 13840096 13840400 -71855354 + AluY SINE Alu 1 302 -9 1880 166 0 3 chr15 13840400 13840683 -71855071 - AluJo SINE Alu -30 282 1 608 294 75 15 chr15 13840741 13840942 -71854812 - MIR SINE MIR -1 261 49 201 279 0 0 chr15 13841972 13842015 -71853739 - L2 LINE L2 -9 3304 3262 532 243 40 62 chr15 13842226 13842403 -71853351 + MIR SINE MIR 48 220 -42 322 235 182 11 chr15 13842774 13842919 -71852835 + MIR SINE MIR 12 188 -62 520 152 0 33 chr15 13842926 13843018 -71852736 + AluJ/FLAM SINE Alu 1 89 -223 * 759 194 0 7 chr15 13843009 13843153 -71852601 + AluJo/FRAM SINE Alu 162 304 -8 2267 101 7 0 chr15 13843247 13843545 -71852209 + AluSp SINE Alu 1 300 -13 387 0 0 0 chr15 13844069 13844112 -71851642 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2236 68 11 0 chr15 13844119 13844397 -71851357 - AluSp SINE Alu -32 281 1 264 30 0 0 chr15 13844935 13844968 -71850786 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 269 310 73 30 chr15 13846096 13846296 -71849458 + MIR SINE MIR 16 221 -41 1975 114 29 26 chr15 13846558 13846866 -71848888 - AluSg SINE Alu -1 309 1 249 238 0 0 chr15 13849076 13849156 -71846598 + A-rich Low_complexity Low_complexity 1 80 0 24 53 0 0 chr15 13851838 13851876 -71843878 + AT_rich Low_complexity Low_complexity 1 38 0 290 357 137 6 chr15 13852316 13852484 -71843270 - MIR SINE MIR -71 191 2 217 259 0 0 chr15 13852864 13852918 -71842836 + A-rich Low_complexity Low_complexity 1 54 0 327 284 37 0 chr15 13853003 13853084 -71842670 + L2 LINE L2 3137 3220 -52 284 250 73 52 chr15 13853557 13853653 -71842101 + L2 LINE L2 3150 3247 -25 2250 100 10 10 chr15 13853871 13854171 -71841583 + AluSx SINE Alu 1 300 -12 218 309 0 0 chr15 13855828 13855883 -71839871 + (CAGA)n Simple_repeat Simple_repeat 4 58 0 244 310 60 10 chr15 13856208 13856308 -71839446 + MER91C DNA MER1_type 36 140 0 21 36 0 0 chr15 13856392 13856420 -71839334 + AT_rich Low_complexity Low_complexity 1 28 0 237 233 17 0 chr15 13856599 13856659 -71839095 + (TG)n Simple_repeat Simple_repeat 2 62 0 201 74 0 0 chr15 13859127 13859154 -71836600 + (T)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr15 13859743 13859765 -71835989 + AT_rich Low_complexity Low_complexity 1 22 0 329 327 19 9 chr15 13860021 13860128 -71835626 - L2 LINE L2 -3 3269 3162 1884 71 0 4 chr15 13860139 13860377 -71835377 - AluY SINE Alu -6 305 69 615 246 102 5 chr15 13862669 13862856 -71832898 - MIR3 SINE MIR 0 208 4 22 56 0 0 chr15 13866976 13867012 -71828742 + AT_rich Low_complexity Low_complexity 1 36 0 718 298 31 9 chr15 13870618 13870843 -71824911 - MIR SINE MIR -30 232 3 278 300 12 0 chr15 13873999 13874079 -71821675 + GA-rich Low_complexity Low_complexity 2 82 0 417 39 0 0 chr15 13876560 13876611 -71819143 + (TG)n Simple_repeat Simple_repeat 2 52 0 273 140 18 18 chr15 13878075 13878132 -71817622 + L1P5 LINE L1 5724 5780 -376 331 258 125 8 chr15 13878157 13878277 -71817477 + L1MC4a LINE L1 5862 5995 -1813 27 29 0 0 chr15 13878356 13878390 -71817364 + AT_rich Low_complexity Low_complexity 1 34 0 209 125 16 47 chr15 13878390 13878454 -71817300 + (TTAAA)n Simple_repeat Simple_repeat 3 64 0 2210 51 25 63 chr15 13879848 13880163 -71815591 + AluY SINE Alu 1 303 -8 261 328 35 43 chr15 13880199 13880315 -71815439 - MIR SINE MIR -62 146 32 872 301 93 4 chr15 13880483 13880752 -71815002 + MLT1K LTR MaLR 226 518 -70 203 246 0 14 chr15 13880841 13880910 -71814844 + GA-rich Low_complexity Low_complexity 2 69 0 287 345 35 41 chr15 13881592 13881737 -71814017 + L2 LINE L2 3129 3272 0 366 343 0 0 chr15 13882984 13883086 -71812668 - MIR3 SINE MIR -15 193 92 451 340 68 31 chr15 13883258 13883449 -71812305 + L2 LINE L2 3074 3271 -1 1496 178 86 29 chr15 13886286 13886601 -71809153 + MER2 DNA MER2_type 13 345 0 22 0 0 0 chr15 13886666 13886688 -71809066 + AT_rich Low_complexity Low_complexity 1 22 0 2228 92 0 16 chr15 13887045 13887348 -71808406 + AluSx SINE Alu 1 298 -14 277 274 9 62 chr15 13888184 13888297 -71807457 + L2 LINE L2 3207 3313 0 707 301 26 5 chr15 13890379 13890572 -71805182 + MIR SINE MIR 8 204 -58 477 293 134 16 chr15 13890595 13890841 -71804913 - L2 LINE L2 -51 3262 2988 210 243 29 57 chr15 13890955 13891025 -71804729 + MIR SINE MIR 192 259 -3 335 270 22 34 chr15 13891954 13892141 -71803613 + MLT1I LTR MaLR 270 409 0 2559 37 0 3 chr15 13894074 13894370 -71801384 + AluY SINE Alu 1 295 -16 22 35 0 0 chr15 13894872 13894901 -71800853 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr15 13895490 13895517 -71800237 + (A)n Simple_repeat Simple_repeat 1 27 0 282 95 0 0 chr15 13895673 13895715 -71800039 + (A)n Simple_repeat Simple_repeat 1 42 0 409 356 27 5 chr15 13896430 13896618 -71799136 + L2 LINE L2 2622 2813 -501 687 68 0 0 chr15 13896618 13896706 -71799048 - AluS SINE Alu -224 88 1 452 198 55 0 chr15 13897232 13897323 -71798431 + MIR SINE MIR 97 192 -70 198 219 0 0 chr15 13899649 13899681 -71796073 - L2 LINE L2 -19 3253 3222 255 229 16 0 chr15 13899725 13899786 -71795968 - MIR SINE MIR -149 113 52 1422 114 32 4 chr15 13899914 13900160 -71795594 + L1MA8 LINE L1 6039 6291 0 2379 73 0 3 chr15 13900234 13900534 -71795220 - AluSg SINE Alu -11 299 1 195 130 78 0 chr15 13900607 13900684 -71795070 + (TA)n Simple_repeat Simple_repeat 1 83 0 2204 94 0 7 chr15 13900992 13901303 -71794451 + AluSp SINE Alu 1 309 0 299 322 143 35 chr15 13901557 13901787 -71793967 + MIR SINE MIR 7 261 -1 501 251 219 27 chr15 13902375 13902594 -71793160 - MIR SINE MIR 0 262 2 713 275 105 21 chr15 13902683 13903160 -71792594 - L1ME4a LINE L1 -8 6113 5597 1969 173 11 6 chr15 13903186 13903539 -71792215 + MER46B DNA MER2_type 1 230 -6 322 290 129 1 chr15 13903546 13903741 -71792013 - L1ME4a LINE L1 -620 5550 5332 243 118 71 0 chr15 13903833 13903918 -71791836 + (TA)n Simple_repeat Simple_repeat 1 91 0 26 50 0 0 chr15 13904013 13904053 -71791701 + AT_rich Low_complexity Low_complexity 1 40 0 361 359 76 29 chr15 13904241 13904458 -71791296 - L1ME4a LINE L1 -832 5314 5076 2139 91 94 21 chr15 13904458 13904797 -71790957 - THE1B LTR MaLR 0 364 1 361 359 76 29 chr15 13904797 13904894 -71790860 - L1ME4a LINE L1 -1070 5076 4985 427 268 86 83 chr15 13905329 13905643 -71790111 - L1ME4a LINE L1 -1751 4395 4081 3006 118 66 23 chr15 13905757 13905786 -71789968 - L1MA9 LINE L1 -155 6157 6131 2689 191 26 48 chr15 13905786 13906352 -71789402 + MLT2B3 LTR ERVL 1 554 0 3006 118 66 23 chr15 13906352 13906839 -71788915 - L1MA9 LINE L1 -181 6131 5619 2670 156 62 6 chr15 13906941 13907474 -71788280 + L1M1 LINE L1 2165 2727 -4838 612 211 0 0 chr15 13908998 13909112 -71786642 - FLAM_C SINE Alu -18 115 2 301 290 174 13 chr15 13909145 13909300 -71786454 - L3 LINE CR1 -644 933 754 337 300 67 33 chr15 13909344 13909524 -71786230 - MIR SINE MIR -40 222 37 362 261 68 0 chr15 13909809 13909897 -71785857 - L2 LINE L2 -2 3311 3218 198 291 139 13 chr15 13909905 13909984 -71785770 - L3 LINE CR1 -1188 389 301 318 278 139 103 chr15 13910365 13910588 -71785166 - MIR SINE MIR -12 250 20 1508 172 28 28 chr15 13912014 13912305 -71783449 + AluJo SINE Alu 4 294 -18 498 271 13 26 chr15 13912677 13912832 -71782922 - MIR SINE MIR -37 225 73 262 247 113 31 chr15 13913853 13913950 -71781804 - MIR SINE MIR -118 144 40 8866 177 50 9 chr15 13914753 13916682 -71779072 - L1 LINE L1 -972 5174 3167 216 200 0 0 chr15 13916816 13916856 -71778898 + CT-rich Low_complexity Low_complexity 2 41 0 1117 257 217 0 chr15 13917885 13918391 -71777363 + LTR50 LTR ERVL 9 624 -171 268 299 113 62 chr15 13918717 13918991 -71776763 + L2 LINE L2 2327 2614 -700 29 0 0 0 chr15 13919059 13919088 -71776666 + AT_rich Low_complexity Low_complexity 1 29 0 229 304 58 72 chr15 13919775 13919913 -71775841 + L2 LINE L2 3137 3272 0 22 35 0 0 chr15 13920232 13920261 -71775493 + AT_rich Low_complexity Low_complexity 1 29 0 219 36 0 0 chr15 13920669 13920697 -71775057 + (CAA)n Simple_repeat Simple_repeat 2 29 0 2131 157 5 22 chr15 13921000 13921369 -71774385 + MLT1A1 LTR MaLR 1 363 -2 183 250 0 21 chr15 13921817 13921865 -71773889 - MIR3 SINE MIR -3 205 159 832 112 6 43 chr15 13922159 13922320 -71773434 + L1MA5 LINE L1 6141 6295 -5 1624 148 32 14 chr15 13922900 13923183 -71772571 - AluJb SINE Alu -20 292 5 366 159 0 0 chr15 13926469 13926538 -71769216 + A-rich Low_complexity Low_complexity 1 69 0 228 54 89 18 chr15 13926706 13926762 -71768992 + LTR66 LTR ERVL 380 439 -171 308 234 0 0 chr15 13926788 13926852 -71768902 - L1MC4 LINE L1 -1339 6703 6640 182 277 0 21 chr15 13927836 13927883 -71767871 + MIR SINE MIR 27 72 -136 683 336 33 35 chr15 13928168 13928238 -71767516 - L3 LINE CR1 -5 1572 1503 2172 108 23 7 chr15 13928238 13928544 -71767210 - AluY SINE Alu 0 311 1 683 336 33 35 chr15 13928544 13928869 -71766885 - L3 LINE CR1 -74 1503 1178 338 181 41 0 chr15 13929090 13929169 -71766585 + LTR50 LTR ERVL 443 795 0 1967 171 0 0 chr15 13929387 13929692 -71766062 + AluJb SINE Alu 1 305 -7 852 161 70 66 chr15 13930272 13930514 -71765240 + L1MA9 LINE L1 6026 6268 -44 195 230 97 88 chr15 13931469 13931582 -71764172 - MIR3 SINE MIR -87 121 8 2427 49 0 3 chr15 13932194 13932506 -71763248 - AluY SINE Alu 0 311 1 335 181 36 0 chr15 13932906 13932989 -71762765 - L1MB8 LINE L1 0 6178 6093 2827 10 0 3 chr15 13933462 13933774 -71761980 - AluYa5 SINE Alu 0 311 1 996 190 29 9 chr15 13935279 13935584 -71760170 + MLT1B LTR MaLR 1 390 0 24 0 0 0 chr15 13936124 13936148 -71759606 + AT_rich Low_complexity Low_complexity 1 24 0 502 276 88 54 chr15 13936262 13936649 -71759105 - L1ME4a LINE L1 -180 5941 5542 1100 156 0 60 chr15 13936768 13936967 -71758787 - AluJo SINE Alu -125 187 1 591 261 42 65 chr15 13936968 13937061 -71758693 - L1ME4a LINE L1 -745 5401 5307 2125 87 3 58 chr15 13937061 13937373 -71758381 - AluSg SINE Alu -15 295 1 591 261 42 65 chr15 13937373 13937589 -71758165 - L1ME4a LINE L1 -839 5307 5099 442 299 91 36 chr15 13937678 13937961 -71757793 - L1ME4a LINE L1 -1251 4895 4600 2082 87 66 0 chr15 13938330 13938616 -71757138 - AluSq SINE Alu -8 305 1 276 325 33 33 chr15 13939712 13939832 -71755922 - MIR SINE MIR -73 135 16 21 36 0 0 chr15 13940172 13940200 -71755554 + AT_rich Low_complexity Low_complexity 1 28 0 2140 104 12 12 chr15 13942182 13942510 -71753244 - L1MC1 LINE L1 0 6333 6006 230 299 47 28 chr15 13944242 13944349 -71751405 - MIR SINE MIR -71 191 83 754 165 0 0 chr15 13944402 13944523 -71751231 + FLAM_C SINE Alu 1 121 -22 1756 148 0 0 chr15 13944900 13945157 -71750597 - AluSx SINE Alu -55 257 1 1110 176 92 40 chr15 13945275 13945525 -71750229 - AluJo SINE Alu -49 263 1 548 256 57 17 chr15 13945667 13945843 -71749911 - MIR SINE MIR -14 248 66 227 208 21 0 chr15 13945953 13946001 -71749753 + CT-rich Low_complexity Low_complexity 2 50 0 243 0 0 0 chr15 13946007 13946034 -71749720 + (TG)n Simple_repeat Simple_repeat 2 28 0 405 0 0 0 chr15 13946401 13946446 -71749308 + (TG)n Simple_repeat Simple_repeat 2 46 0 1338 184 4 8 chr15 13946448 13946682 -71749072 - AluJo SINE Alu -36 276 44 186 43 0 0 chr15 13947121 13947144 -71748610 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 245 331 56 35 chr15 13948802 13948944 -71746810 - MIR3 SINE MIR -29 179 35 388 239 180 42 chr15 13949413 13949580 -71746174 + MIR3 SINE MIR 2 191 -17 228 86 0 0 chr15 13953030 13953065 -71742689 + (TG)n Simple_repeat Simple_repeat 2 36 0 395 294 19 9 chr15 13953744 13953889 -71741865 + MER5A DNA MER1_type 26 178 0 620 231 84 0 chr15 13954140 13954283 -71741471 + MER5A DNA MER1_type 35 189 0 1479 184 96 0 chr15 13954854 13955126 -71740628 + AluJo SINE Alu 1 298 -14 344 271 70 8 chr15 13955380 13955509 -71740245 - MIR SINE MIR -123 139 3 2370 82 0 13 chr15 13956640 13956945 -71738809 - AluSc SINE Alu -8 301 1 423 220 120 0 chr15 13957031 13957131 -71738623 - MIR SINE MIR -70 192 81 273 374 70 42 chr15 13957498 13957856 -71737898 + L2 LINE L2 2898 3265 -7 201 74 0 0 chr15 13958438 13958465 -71737289 + (GAA)n Simple_repeat Simple_repeat 2 28 0 331 222 56 79 chr15 13959299 13959425 -71736329 + MIR SINE MIR 66 188 -74 554 269 0 0 chr15 13959573 13959723 -71736031 + FLAM_A SINE Alu 1 133 0 2640 52 0 0 chr15 13961333 13961640 -71734114 + AluY SINE Alu 1 307 -4 2344 75 0 0 chr15 13962402 13962712 -71733042 - AluY SINE Alu 0 310 1 1542 176 17 3 chr15 13962714 13963004 -71732750 - AluJb SINE Alu -18 294 1 2432 101 0 0 chr15 13963934 13964241 -71731513 - AluSg SINE Alu -1 309 3 2206 112 0 3 chr15 13965614 13965909 -71729845 + AluSq SINE Alu 1 294 -19 212 88 70 0 chr15 13965910 13965967 -71729787 + (TA)n Simple_repeat Simple_repeat 1 61 0 355 216 10 62 chr15 13966036 13966133 -71729621 - MIR SINE MIR -79 183 92 258 81 0 0 chr15 13967780 13967817 -71727937 + (CA)n Simple_repeat Simple_repeat 1 37 0 180 0 0 0 chr15 13968358 13968378 -71727376 + (TA)n Simple_repeat Simple_repeat 2 21 0 939 157 12 6 chr15 13970804 13970976 -71724778 + L1MB8 LINE L1 5997 6169 -9 1955 142 3 3 chr15 13970994 13971303 -71724451 - AluSx SINE Alu -3 309 1 651 129 0 10 chr15 13972346 13972447 -71723307 - HY3 scRNA scRNA -1 100 1 411 273 39 16 chr15 13972447 13972575 -71723179 + MIR SINE MIR 61 191 -71 181 116 47 70 chr15 13972683 13972726 -71723028 + MIR SINE MIR 218 259 -3 1718 205 32 20 chr15 13972749 13973149 -71722605 + L1ME1 LINE L1 5757 6161 -5 469 287 83 9 chr15 13973783 13974005 -71721749 - MIR3 SINE MIR -6 256 9 379 138 31 0 chr15 13975595 13975660 -71720094 + MER116 DNA Mariner 1 67 -13 1545 189 18 7 chr15 13975928 13976234 -71719520 - AluJb SINE Alu 0 310 2 652 235 107 11 chr15 13976430 13976617 -71719137 - MIR SINE MIR 0 262 58 395 276 32 8 chr15 13976783 13976906 -71718848 + L2 LINE L2 3187 3312 -1 207 0 0 0 chr15 13979167 13979190 -71716564 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr15 13981140 13981163 -71714591 + AT_rich Low_complexity Low_complexity 1 23 0 326 246 0 0 chr15 13981172 13981233 -71714521 + AluS SINE Alu 1 61 -242 38 39 0 0 chr15 13983038 13983090 -71712664 + AT_rich Low_complexity Low_complexity 1 52 0 703 213 0 0 chr15 13984319 13984446 -71711308 - FLAM_A SINE Alu -10 132 6 392 276 186 30 chr15 13984506 13984705 -71711049 + MIR SINE MIR 15 244 -18 214 260 78 0 chr15 13987570 13987647 -71708107 + MIR SINE MIR 67 149 -113 1676 173 14 14 chr15 13987903 13988198 -71707556 - AluJo SINE Alu -17 295 1 1565 130 0 0 chr15 13988210 13988426 -71707328 - AluJb SINE Alu -11 301 86 23 0 0 0 chr15 13988713 13988736 -71707018 + AT_rich Low_complexity Low_complexity 1 23 0 618 310 50 21 chr15 13989096 13989335 -71706419 - MIR SINE MIR -11 251 6 2328 85 0 13 chr15 14089713 14090018 -71605736 + AluSg SINE Alu 1 301 -9 193 311 108 0 chr15 14090313 14090387 -71605367 + MIR SINE MIR 73 154 -108 30 27 0 0 chr15 14090642 14090679 -71605075 + AT_rich Low_complexity Low_complexity 1 37 0 1945 109 84 0 chr15 14091247 14091522 -71604232 - AluSx SINE Alu -14 298 1 595 257 14 7 chr15 14091750 14091898 -71603856 + AluJo SINE Alu 3 151 -161 294 269 113 11 chr15 14092171 14092357 -71603397 - L1MC5 LINE L1 -34 7927 7723 1505 164 19 65 chr15 14092623 14092933 -71602821 + AluJo SINE Alu 1 296 -16 315 111 28 28 chr15 14092944 14093016 -71602738 + GA-rich Low_complexity Low_complexity 1 72 0 480 240 128 36 chr15 14093553 14093749 -71602005 + MIR SINE MIR 49 262 0 23 33 0 0 chr15 14094307 14094337 -71601417 + AT_rich Low_complexity Low_complexity 1 30 0 321 26 0 0 chr15 14094988 14095026 -71600728 + (CA)n Simple_repeat Simple_repeat 2 39 0 828 296 47 42 chr15 14095188 14095570 -71600184 - L2 LINE L2 -4 3309 2926 615 205 0 8 chr15 14095570 14095687 -71600067 + MLT1C LTR MaLR 352 467 0 503 315 118 34 chr15 14095844 14096082 -71599672 + MIR SINE MIR 5 262 0 827 177 0 0 chr15 14097118 14097265 -71598489 + L1MB5 LINE L1 6020 6166 -8 1426 149 106 21 chr15 14097721 14098003 -71597751 - AluJo SINE Alu -6 306 1 275 258 0 0 chr15 14098055 14098117 -71597637 - MIR SINE MIR -27 235 174 1476 177 32 14 chr15 14098372 14098681 -71597073 + AluJb SINE Alu 1 314 0 758 128 90 19 chr15 14098737 14098893 -71596861 - L1MB2 LINE L1 -1 6170 6004 3562 156 42 20 chr15 14100090 14100839 -71594915 + LTR1B LTR ERV1 1 785 0 368 322 8 8 chr15 14101058 14101179 -71594575 + L2 LINE L2 3191 3311 -2 2391 77 0 0 chr15 14101269 14101569 -71594185 - AluY SINE Alu -11 300 1 2717 59 62 6 chr15 14101666 14102021 -71593733 + THE1C LTR MaLR 1 375 0 558 317 141 36 chr15 14102226 14102448 -71593306 + L2 LINE L2 1869 2066 -1248 371 19 0 38 chr15 14102448 14102501 -71593253 + (TCCA)n Simple_repeat Simple_repeat 1 51 0 558 317 141 36 chr15 14102501 14102859 -71592895 + L2 LINE L2 2066 2510 -804 698 284 129 9 chr15 14103172 14103404 -71592350 - MIR SINE MIR 0 262 3 1088 179 18 40 chr15 14103631 14103854 -71591900 - MER20 DNA MER1_type -1 218 1 1605 133 0 17 chr15 14104201 14104441 -71591313 + AluJo SINE Alu 36 271 -41 22 0 0 0 chr15 14104444 14104466 -71591288 + AT_rich Low_complexity Low_complexity 1 22 0 1968 98 95 11 chr15 14105014 14105299 -71590455 - AluSx SINE Alu -3 309 1 317 184 23 35 chr15 14106058 14106145 -71589609 - L1PA16 LINE L1 -2 6164 6079 22 0 0 0 chr15 14106330 14106352 -71589402 + AT_rich Low_complexity Low_complexity 1 22 0 2448 97 3 0 chr15 14106953 14107264 -71588490 - AluSx SINE Alu 0 312 1 1957 106 26 153 chr15 14107419 14107613 -71588141 + MSTA LTR MaLR 1 218 -210 764 95 0 9 chr15 14107613 14107729 -71588025 + (TTCC)n Simple_repeat Simple_repeat 4 118 0 1957 106 26 153 chr15 14107729 14107763 -71587991 + MSTA LTR MaLR 218 255 -173 1845 178 0 0 chr15 14107763 14108056 -71587698 - AluSx SINE Alu -19 293 1 1957 106 26 153 chr15 14108056 14108316 -71587438 + MSTA LTR MaLR 255 428 0 248 314 25 33 chr15 14108784 14108800 -71586954 - MIR SINE MIR -115 147 132 2088 126 39 39 chr15 14108800 14108841 -71586913 - THE1B LTR MaLR 0 364 324 2084 123 0 3 chr15 14108841 14109158 -71586596 - AluSx SINE Alu 0 316 1 2088 126 39 39 chr15 14109158 14109479 -71586275 - THE1B LTR MaLR -39 325 1 248 314 25 33 chr15 14109479 14109583 -71586171 - MIR SINE MIR -130 132 28 801 189 0 0 chr15 14111022 14111154 -71584600 + FLAM_A SINE Alu 2 133 0 2270 110 0 10 chr15 14111462 14111770 -71583984 + AluSx SINE Alu 2 306 -6 333 200 107 100 chr15 14111824 14111964 -71583790 + MER69 DNA AcHobo 7 147 -2379 1846 145 3 20 chr15 14112764 14113068 -71582686 - AluJo SINE Alu -13 299 1 414 280 150 20 chr15 14113520 14113723 -71582031 + MIR SINE MIR 35 261 -1 1992 154 6 3 chr15 14113868 14114179 -71581575 - AluJb SINE Alu 0 312 1 2466 253 172 28 chr15 14114352 14115552 -71580202 + L2 LINE L2 1966 3312 -1 3067 157 86 2 chr15 14115587 14116201 -71579553 - MER44D DNA MER2_type 0 705 4 1830 160 24 0 chr15 14116442 14116730 -71579024 + AluJb SINE Alu 3 297 -15 1527 86 0 0 chr15 14116731 14116954 -71578800 + AluSg/x SINE Alu 85 307 0 1322 186 138 75 chr15 14117103 14117208 -71578546 + MLT2D LTR ERVL 1 98 -417 2042 142 3 0 chr15 14117208 14117510 -71578244 - AluSx SINE Alu -8 304 2 1322 186 138 75 chr15 14117510 14117817 -71577937 + MLT2D LTR ERVL 98 515 0 365 225 36 45 chr15 14118411 14118522 -71577232 + MER103 DNA DNA 21 130 -36 523 330 132 36 chr15 14118566 14118736 -71577018 - L2 LINE L2 -1217 2097 1945 2058 120 0 0 chr15 14118736 14119019 -71576735 + AluSg SINE Alu 1 283 -27 347 61 0 0 chr15 14119019 14119058 -71576696 + FLAM_C SINE Alu 1 322 0 523 330 132 36 chr15 14119058 14119407 -71576347 - L2 LINE L2 -1369 1945 1527 2861 131 0 18 chr15 14119415 14119851 -71575903 - MSTC LTR MaLR 0 428 1 205 190 30 110 chr15 14119961 14120061 -71575693 - L3b LINE CR1 -335 1248 1157 22 56 0 0 chr15 14120530 14120566 -71575188 + AT_rich Low_complexity Low_complexity 1 36 0 1057 173 0 0 chr15 14120650 14120818 -71574936 + FRAM SINE Alu 1 166 -10 1678 177 7 13 chr15 14120821 14121131 -71574623 + AluJo SINE Alu 1 308 -4 804 226 181 60 chr15 14121528 14121783 -71573971 - MER20B DNA MER1_type -3 780 557 1647 188 3 35 chr15 14121783 14122097 -71573657 - AluJo SINE Alu -6 306 3 804 226 181 60 chr15 14122097 14122179 -71573575 - MER20B DNA MER1_type -226 557 486 2286 108 16 3 chr15 14122179 14122486 -71573268 + AluSx SINE Alu 1 311 -1 216 0 0 0 chr15 14122486 14122510 -71573244 + (TA)n Simple_repeat Simple_repeat 2 25 0 804 226 181 60 chr15 14122510 14122866 -71572888 - MER20B DNA MER1_type -296 487 1 1981 110 23 17 chr15 14123050 14123350 -71572404 + AluSx SINE Alu 1 302 -10 22 0 0 0 chr15 14124933 14124955 -71570799 + AT_rich Low_complexity Low_complexity 1 22 0 224 357 19 24 chr15 14125498 14125667 -71570087 - MIR3 SINE MIR -6 202 34 414 159 0 13 chr15 14125956 14126170 -71569584 + AluJo SINE Alu 1 299 -13 2136 93 0 48 chr15 14127474 14127786 -71567968 + AluSx SINE Alu 1 297 -15 189 0 0 0 chr15 14127898 14127919 -71567835 + (A)n Simple_repeat Simple_repeat 1 21 0 323 245 144 8 chr15 14127988 14128245 -71567509 - L1MC5 LINE L1 -47 7914 7623 361 235 61 97 chr15 14128352 14128599 -71567155 - L1MC5 LINE L1 -465 7496 7259 2290 116 3 0 chr15 14128600 14128903 -71566851 - AluSx SINE Alu -8 304 1 236 222 87 87 chr15 14129008 14129260 -71566494 - L1MC5 LINE L1 -738 7223 6972 599 332 4 24 chr15 14129374 14129485 -71566269 - L1MC4 LINE L1 -1040 7002 6890 2048 125 31 55 chr15 14129485 14129869 -71565885 + THE1C LTR MaLR 1 375 0 599 332 4 24 chr15 14129869 14130010 -71565744 - L1MC4 LINE L1 -1152 6890 6755 229 342 71 64 chr15 14130132 14130413 -71565341 + MLT1I LTR MaLR 95 377 -32 326 308 134 55 chr15 14130421 14130765 -71564989 - L1MC4a LINE L1 -1132 6676 6306 317 216 82 82 chr15 14130808 14130851 -71564903 - L1MC4a LINE L1 -1541 6267 6225 1641 197 6 25 chr15 14130851 14131166 -71564588 - AluJo SINE Alu -3 309 1 317 216 82 82 chr15 14131166 14131316 -71564438 - L1MC4a LINE L1 -1582 6226 6074 788 241 96 100 chr15 14131364 14132043 -71563711 - L1MC4a LINE L1 -1875 5933 5258 201 39 0 0 chr15 14132182 14132208 -71563546 + (T)n Simple_repeat Simple_repeat 1 26 0 243 310 0 0 chr15 14132431 14132518 -71563236 - L1MC4a LINE L1 -1317 4829 4743 314 87 0 0 chr15 14132944 14132990 -71562764 - MADE1 DNA Mariner -33 47 2 1054 239 41 88 chr15 14133065 14133529 -71562225 + MSTB2 LTR MaLR 16 457 0 2545 119 3 13 chr15 14133680 14134058 -71561696 + THE1C LTR MaLR 1 374 -1 273 29 0 0 chr15 14134792 14134826 -71560928 + (CA)n Simple_repeat Simple_repeat 2 35 0 2230 116 0 0 chr15 14135048 14135341 -71560413 - AluSx SINE Alu -19 293 1 285 98 0 0 chr15 14136657 14136698 -71559056 + (TC)n Simple_repeat Simple_repeat 1 41 0 3022 140 92 0 chr15 14137042 14137258 -71558496 + MER7C DNA MER2_type 1 196 -2832 203 61 30 0 chr15 14137258 14137291 -71558463 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 3022 140 92 0 chr15 14137291 14137617 -71558137 + MER7C DNA MER2_type 196 593 -9 345 307 42 30 chr15 14137714 14137880 -71557874 + L2 LINE L2 2603 2770 -544 392 220 167 54 chr15 14137886 14138054 -71557700 - MIR SINE MIR -72 190 4 2151 116 0 0 chr15 14138089 14138403 -71557351 + AluSx SINE Alu 1 314 0 1746 176 77 57 chr15 14138540 14139035 -71556719 + MLT1D LTR MaLR 1 505 0 1686 156 90 0 chr15 14140147 14140468 -71555286 + MLT1A1 LTR MaLR 16 365 0 315 300 20 10 chr15 14140476 14140576 -71555178 - L2 LINE L2 -10 3303 3203 821 116 7 14 chr15 14140864 14141011 -71554743 + L1MC3 LINE L1 6950 7095 -690 279 165 38 63 chr15 14141013 14141092 -71554662 + MLT1F1 LTR MaLR 35 111 -456 2075 190 104 45 chr15 14141092 14141651 -71554103 + L1MC3 LINE L1 7174 7765 -20 393 198 26 0 chr15 14142417 14142533 -71553221 + GA-rich Low_complexity Low_complexity 2 120 0 252 111 0 0 chr15 14144595 14144640 -71551114 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 258 277 72 0 chr15 14145153 14145236 -71550518 - L2 LINE L2 -47 3225 3137 449 248 20 0 chr15 14145350 14145451 -71550303 - MIR SINE MIR -73 189 87 242 346 110 48 chr15 14145547 14145803 -71549951 - L2 LINE L2 -340 2974 2735 601 250 55 10 chr15 14145803 14145850 -71549904 - MER3 DNA MER1_type 0 209 166 2144 113 3 23 chr15 14145850 14146160 -71549594 - AluSx SINE Alu -8 304 1 601 250 55 10 chr15 14146160 14146312 -71549442 - MER3 DNA MER1_type -43 166 1 242 346 110 48 chr15 14146312 14146765 -71548989 - L2 LINE L2 -579 2735 2221 210 351 0 14 chr15 14146886 14146960 -71548794 - MER5A DNA MER1_type -110 79 7 180 288 12 38 chr15 14147152 14147232 -71548522 - L2 LINE L2 -1355 1959 1882 23 0 0 0 chr15 14147312 14147335 -71548419 + AT_rich Low_complexity Low_complexity 1 23 0 644 132 46 46 chr15 14147335 14147476 -71548278 - L1MA4 LINE L1 0 6300 6157 4527 115 13 16 chr15 14147476 14148169 -71547585 - LTR8 LTR ERV1 0 691 1 1575 184 83 54 chr15 14148179 14148624 -71547130 - MER31B LTR ERV1 -4 462 5 2326 91 3 0 chr15 14149316 14149612 -71546142 - AluSx SINE Alu -15 297 1 2329 81 0 0 chr15 14149988 14150273 -71545481 - AluSx SINE Alu -8 304 20 323 319 0 0 chr15 14150548 14150639 -71545115 - MIR SINE MIR -64 144 54 2203 136 0 0 chr15 14150970 14151271 -71544483 + AluSx SINE Alu 1 301 -11 458 307 138 5 chr15 14151285 14151503 -71544251 - MIR SINE MIR -2 260 14 1597 213 13 43 chr15 14151503 14151657 -71544097 + MLT1A1 LTR MaLR 1 158 -207 2187 137 0 3 chr15 14151657 14151970 -71543784 + AluSx SINE Alu 1 312 0 1597 213 13 43 chr15 14151970 14152191 -71543563 + MLT1A1 LTR MaLR 158 365 0 292 300 213 23 chr15 14152944 14153297 -71542457 - L2 LINE L2 -25 3247 2828 571 280 31 31 chr15 14153457 14153650 -71542104 - MIR SINE MIR 0 262 70 1547 186 22 16 chr15 14153651 14153822 -71541932 + MLT1A1 LTR MaLR 15 190 -175 1654 184 31 0 chr15 14153822 14154110 -71541644 + AluJb SINE Alu 2 298 -14 1547 186 22 16 chr15 14154110 14154261 -71541493 + MLT1A1 LTR MaLR 190 339 -26 678 133 0 0 chr15 14154269 14154374 -71541380 + MLT1A2 LTR MaLR 270 374 0 400 375 27 48 chr15 14154468 14154761 -71540993 + L2 LINE L2 2986 3272 0 297 355 43 14 chr15 14154913 14155054 -71540700 - MIR3 SINE MIR -61 147 3 332 324 152 12 chr15 14155061 14155317 -71540437 - L1ME4a LINE L1 -257 5864 5573 1935 153 0 10 chr15 14156675 14156963 -71538791 - AluSx SINE Alu -24 288 4 2217 119 3 0 chr15 14156983 14157278 -71538476 - AluSx SINE Alu -16 296 1 2219 101 0 7 chr15 14157453 14157741 -71538013 - AluSx SINE Alu -26 286 1 2143 148 11 8 chr15 14158426 14158785 -71536969 - MLT1A1 LTR MaLR -5 360 1 453 221 250 0 chr15 14159503 14159643 -71536111 - MER5A DNA MER1_type 0 189 15 557 213 69 23 chr15 14159792 14160020 -71535734 + MER106B DNA MER1_type 1 1059 0 453 168 0 84 chr15 14160464 14160583 -71535171 + ERVL-B1 LTR ERVL 777 885 -4879 * 12232 150 18 15 chr15 14160580 14161229 -71534525 + ERVL-B1 LTR ERVL 3082 3728 -2036 1924 132 7 0 chr15 14161229 14161510 -71534244 + AluJo SINE Alu 30 312 0 12232 150 18 15 chr15 14161510 14162963 -71532791 + ERVL-B1 LTR ERVL 3728 5190 -574 926 133 7 0 chr15 14162964 14163099 -71532655 + AluJo SINE Alu 1 136 -176 2771 137 34 60 chr15 14163107 14163704 -71532050 + ERVL-B1 LTR ERVL 5176 5756 -8 2062 158 77 47 chr15 14163705 14164198 -71531556 + MLT2B1 LTR ERVL 1 508 -12 607 314 67 5 chr15 14164510 14164733 -71531021 - MIR SINE MIR -3 259 23 2685 167 15 9 chr15 14164909 14165435 -71530319 - L1MB8 LINE L1 0 6178 5650 944 120 0 0 chr15 14165435 14165560 -71530194 - FLAM_C SINE Alu -7 136 12 1198 217 11 0 chr15 14165571 14165838 -71529916 - L1MB8 LINE L1 -527 5657 5388 2511 198 94 29 chr15 14165861 14166758 -71528996 - L1MB8 LINE L1 -2128 4018 3064 372 270 36 15 chr15 14167934 14168071 -71527683 + L1MC/D LINE L1 5568 5707 -2101 339 25 0 0 chr15 14168100 14168140 -71527614 + (GA)n Simple_repeat Simple_repeat 2 41 0 289 158 0 0 chr15 14168757 14168814 -71526940 + T-rich Low_complexity Low_complexity 1 180 0 2539 44 0 25 chr15 14168814 14169133 -71526621 - AluY SINE Alu 0 368 1 320 272 61 54 chr15 14169201 14169348 -71526406 + MIR3 SINE MIR 54 201 -7 279 0 0 0 chr15 14169687 14169718 -71526036 + (CA)n Simple_repeat Simple_repeat 1 31 0 6754 62 11 0 chr15 14169773 14171116 -71524638 + L1PA6 LINE L1 4773 6135 -19 240 111 0 0 chr15 14171116 14171152 -71524602 + (TA)n Simple_repeat Simple_repeat 1 36 0 431 246 130 43 chr15 14171391 14171776 -71523978 + LTR16B LTR ERVL 18 464 0 1475 180 73 15 chr15 14172211 14172483 -71523271 - AluJb SINE Alu -12 300 13 412 281 69 62 chr15 14172605 14172865 -71522889 + MLT1I LTR MaLR 98 359 -50 2465 258 61 38 chr15 14172876 14174048 -71521706 - L1MC4 LINE L1 0 8042 6843 198 291 181 16 chr15 14174176 14174303 -71521451 + MIR SINE MIR 88 235 -27 198 0 0 0 chr15 14175019 14175041 -71520713 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 352 238 48 0 chr15 14175043 14175127 -71520627 - L2 LINE L2 -15 3298 3211 203 312 0 13 chr15 14176034 14176111 -71519643 + G-rich Low_complexity Low_complexity 86 161 0 664 113 56 63 chr15 14177016 14177158 -71518596 + AluJo SINE Alu 27 167 -145 1038 175 128 13 chr15 14177386 14177620 -71518134 - AluJo SINE Alu -25 287 27 191 314 157 39 chr15 14178217 14178319 -71517435 - L2 LINE L2 0 3313 3200 454 268 24 24 chr15 14178403 14178526 -71517228 - L2 LINE L2 -3 3269 3147 22 0 0 0 chr15 14178661 14178683 -71517071 + AT_rich Low_complexity Low_complexity 1 22 0 1255 134 0 0 chr15 14178989 14179168 -71516586 - AluSg/x SINE Alu -8 304 126 221 360 93 50 chr15 14179747 14180069 -71515685 + L2 LINE L2 2560 2895 -419 1544 150 133 26 chr15 14180074 14180413 -71515341 - THE1C LTR MaLR 0 375 1 202 152 0 0 chr15 14180709 14180742 -71515012 + L2 LINE L2 3272 3304 -9 984 262 26 0 chr15 14180772 14181001 -71514753 - MIR SINE MIR 0 262 28 21 0 0 0 chr15 14181442 14181463 -71514291 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr15 14181765 14181798 -71513956 + AT_rich Low_complexity Low_complexity 1 33 0 2333 74 0 3 chr15 14182147 14182444 -71513310 - AluY SINE Alu -15 296 1 21 0 0 0 chr15 14182676 14182697 -71513057 + AT_rich Low_complexity Low_complexity 1 21 0 2010 119 0 0 chr15 14182852 14183121 -71512633 - AluSx SINE Alu -8 304 36 360 103 0 0 chr15 14183582 14183640 -71512114 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 218 330 9 47 chr15 14184444 14184550 -71511204 + MIR SINE MIR 6 107 -155 286 236 45 11 chr15 14184554 14184643 -71511111 + GA-rich Low_complexity Low_complexity 3 94 0 787 164 0 22 chr15 14184816 14184950 -71510804 - FLAM_A SINE Alu -2 131 1 2528 44 0 0 chr15 14186872 14187169 -71508585 + AluY SINE Alu 1 297 -14 864 184 82 4 chr15 14187435 14187690 -71508064 - MER33 DNA MER1_type -4 320 46 230 284 164 0 chr15 14188159 14188226 -71507528 - MIR SINE MIR -183 79 2 435 294 129 68 chr15 14188228 14188723 -71507031 - L2 LINE L2 -757 2557 2002 1902 166 19 3 chr15 14188723 14189030 -71506724 + AluJo SINE Alu 1 312 0 435 294 129 68 chr15 14189030 14189265 -71506489 - L2 LINE L2 -1312 2002 1783 4944 181 34 41 chr15 14190863 14192690 -71503064 - L1MD1 LINE L1 -1 6241 4432 1046 285 85 40 chr15 14192695 14192766 -71502988 + L2 LINE L2 2362 2428 -886 1580 95 41 0 chr15 14192766 14192987 -71502767 - MER30 DNA MER1_type 0 230 1 1046 285 85 40 chr15 14192987 14193459 -71502295 + L2 LINE L2 2428 2929 -385 1045 73 0 0 chr15 14193724 14193848 -71501906 + AluSg/x SINE Alu 173 296 -16 267 54 0 0 chr15 14194156 14194193 -71501561 - AluSg/x SINE Alu -72 230 194 2310 93 0 3 chr15 14194938 14195240 -71500514 - AluY SINE Alu -10 301 1 23 0 0 0 chr15 14196001 14196024 -71499730 + AT_rich Low_complexity Low_complexity 1 23 0 434 343 85 33 chr15 14196242 14196513 -71499241 - L2 LINE L2 -1 3271 2987 30 45 0 0 chr15 14197571 14197615 -71498139 + AT_rich Low_complexity Low_complexity 1 44 0 336 319 238 14 chr15 14197932 14198142 -71497612 - MIR SINE MIR -4 258 2 239 225 38 25 chr15 14198202 14198282 -71497472 - L1ME LINE L1 -539 5582 5502 953 273 133 53 chr15 14198401 14199375 -71496379 - HAL1 LINE L1 -721 1786 735 462 287 151 25 chr15 14199933 14200250 -71495504 + LTR67 LTR ERVL 2 358 -199 559 302 147 22 chr15 14200612 14201181 -71494573 - L1ME3 LINE L1 -222 5940 5302 369 0 0 0 chr15 14201196 14201237 -71494517 + (TG)n Simple_repeat Simple_repeat 2 42 0 205 50 50 25 chr15 14201237 14201277 -71494477 + (TA)n Simple_repeat Simple_repeat 2 42 0 1889 154 0 33 chr15 14201278 14201584 -71494170 - AluSx SINE Alu -16 296 1 2375 104 0 3 chr15 14201619 14201927 -71493827 + AluSx SINE Alu 1 307 -5 250 248 7 66 chr15 14202101 14202238 -71493516 - L1 LINE L1 -1112 5034 4906 2417 80 0 0 chr15 14202250 14202549 -71493205 - AluSq SINE Alu -14 299 1 416 294 21 21 chr15 14202615 14202758 -71492996 - L1 LINE L1 -1334 4812 4670 2326 85 3 0 chr15 14202803 14203096 -71492658 + AluY SINE Alu 1 294 -17 352 239 164 0 chr15 14203096 14203230 -71492524 - L1 LINE L1 -3789 2357 2202 536 298 19 72 chr15 14203250 14203680 -71492074 - L1M4 LINE L1 -3603 2543 2137 301 276 133 10 chr15 14203777 14203973 -71491781 - L1MC/D LINE L1 -2006 5802 5583 39 50 0 0 chr15 14204158 14204218 -71491536 + AT_rich Low_complexity Low_complexity 1 60 0 358 257 66 72 chr15 14205259 14205411 -71490343 + MER5A DNA MER1_type 7 157 -32 2326 84 0 7 chr15 14205879 14206176 -71489578 + AluSx SINE Alu 1 295 -17 206 31 0 31 chr15 14206183 14206215 -71489539 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 372 119 0 0 chr15 14206731 14206790 -71488964 + (CA)n Simple_repeat Simple_repeat 2 60 0 403 267 89 14 chr15 14207081 14207227 -71488527 - MIR SINE MIR -16 246 90 2174 132 0 0 chr15 14207479 14207775 -71487979 - AluSx SINE Alu -16 296 1 332 257 125 37 chr15 14208397 14208533 -71487221 - MIR SINE MIR -67 195 48 198 0 0 0 chr15 14211139 14211161 -71484593 + (TA)n Simple_repeat Simple_repeat 2 23 0 2231 104 0 10 chr15 14211967 14212264 -71483490 + AluSg SINE Alu 1 294 -16 459 184 14 75 chr15 14212387 14212534 -71483220 - L1MB3 LINE L1 -2 6181 6044 23 33 0 0 chr15 14215048 14215078 -71480676 + AT_rich Low_complexity Low_complexity 1 30 0 370 332 63 10 chr15 14216207 14216412 -71479342 + L1MC4 LINE L1 7783 7998 -44 687 257 51 14 chr15 14216418 14216632 -71479122 + MIR SINE MIR 40 261 -1 661 302 28 12 chr15 14217105 14217353 -71478401 - MIR SINE MIR 0 262 11 295 214 10 117 chr15 14218327 14218430 -71477324 - MIR3 SINE MIR -6 202 111 327 295 26 0 chr15 14219211 14219289 -71476465 + L2 LINE L2 3163 3242 -30 1088 206 105 23 chr15 14420166 14420472 -71275282 + MER2 DNA MER2_type 14 344 -1 225 330 66 28 chr15 14420665 14420847 -71274907 + MER5A DNA MER1_type 1 189 0 492 164 67 0 chr15 14421289 14421453 -71274301 - L1PA16 LINE L1 -6 6160 5951 2036 146 3 0 chr15 14423124 14423412 -71272342 + AluSx SINE Alu 1 289 -23 25 0 0 0 chr15 14423412 14423437 -71272317 + AT_rich Low_complexity Low_complexity 1 25 0 2232 85 0 7 chr15 14423473 14423756 -71271998 + AluSg SINE Alu 23 303 -7 750 268 79 45 chr15 14423990 14424344 -71271410 - L3 LINE CR1 -58 1519 1154 1819 158 3 31 chr15 14424420 14424737 -71271017 + AluJb SINE Alu 5 312 0 945 225 60 41 chr15 14424800 14425113 -71270641 + L1ME2 LINE L1 5837 6154 -10 1979 181 12 33 chr15 14425773 14426192 -71269562 + L1MC3 LINE L1 7355 7764 -21 743 216 36 0 chr15 14426464 14426631 -71269123 - L1ME LINE L1 -645 5517 5345 614 216 0 9 chr15 14426631 14426747 -71269007 - HERV16 LTR ERVL -3186 1810 1696 321 135 0 0 chr15 14426761 14426813 -71268941 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 509 202 124 0 chr15 14426813 14426942 -71268812 - AluJb SINE Alu -2 310 166 584 238 116 11 chr15 14427649 14427838 -71267916 + MER3 DNA MER1_type 1 209 0 267 103 0 0 chr15 14428659 14428698 -71267056 + (TG)n Simple_repeat Simple_repeat 2 40 0 827 148 9 124 chr15 14429565 14429775 -71265979 + MER5A DNA MER1_type 1 186 -3 633 133 0 10 chr15 14431468 14431566 -71264188 + AluS SINE Alu 2 98 -214 243 345 17 25 chr15 14433046 14433165 -71262589 - MIR SINE MIR -111 151 34 180 0 0 0 chr15 14434950 14434970 -71260784 + (A)n Simple_repeat Simple_repeat 1 20 0 648 269 34 10 chr15 14435346 14435554 -71260200 + MIR SINE MIR 15 227 -35 2264 94 14 0 chr15 14436035 14436332 -71259422 + AluSx SINE Alu 1 301 -11 642 234 136 0 chr15 14436749 14436933 -71258821 - L1ME3A LINE L1 -14 6156 5948 234 204 0 0 chr15 14436933 14436977 -71258777 - MLT1H LTR MaLR 0 549 506 3510 92 9 0 chr15 14437043 14437497 -71258257 - LTR22A LTR ERVK 0 458 1 235 253 51 25 chr15 14437535 14437614 -71258140 - MLT1H LTR MaLR -267 282 202 829 166 41 6 chr15 14437703 14437872 -71257882 + MER96B DNA MER1_type? 243 417 0 466 227 36 9 chr15 14437873 14437983 -71257771 - MLT1H LTR MaLR -436 113 1 1674 176 3 21 chr15 14438006 14438290 -71257464 + AluJo SINE Alu 3 281 -31 1109 264 100 0 chr15 14438295 14438636 -71257118 - L1ME3A LINE L1 -228 5942 5568 668 218 38 28 chr15 14438645 14438856 -71256898 - L1ME3A LINE L1 -1393 4753 4541 1360 203 77 59 chr15 14439011 14439400 -71256354 + MSTD LTR MaLR 1 396 0 383 230 118 7 chr15 14441710 14441845 -71253909 + MIR SINE MIR 47 196 -66 1639 234 128 30 chr15 14442204 14442742 -71253012 - MLT1E2 LTR MaLR -15 611 21 797 181 0 0 chr15 14443191 14443324 -71252430 - FLAM_C SINE Alu 0 133 1 3611 282 96 48 chr15 14443379 14443985 -71251769 - HERV16 LTR ERVL -3416 1580 1004 5894 125 14 13 chr15 14443985 14444887 -71250867 + MER4D LTR ERV1 1 903 0 3611 282 96 48 chr15 14444887 14445784 -71249970 - HERV16 LTR ERVL -3992 1004 5 587 241 26 0 chr15 14445800 14445916 -71249838 - LTR16A LTR ERVL -6 444 326 2244 114 0 16 chr15 14446044 14446351 -71249403 - AluSg SINE Alu -8 302 1 702 248 86 14 chr15 14446539 14446761 -71248993 + MIR SINE MIR 4 241 -21 183 42 0 0 chr15 14446828 14446852 -71248902 + (T)n Simple_repeat Simple_repeat 1 24 0 2392 66 3 0 chr15 14446875 14447352 -71248402 - AluY SINE Alu 0 478 1 427 247 153 80 chr15 14447385 14447737 -71248017 - L1ME LINE L1 -449 5672 5295 2761 80 0 25 chr15 14447766 14448130 -71247624 - THE1A LTR MaLR 0 355 1 330 224 11 32 chr15 14448218 14448339 -71247415 + L1MC4 LINE L1 7873 8042 0 388 306 64 50 chr15 14448968 14449187 -71246567 - MLT1I LTR MaLR -120 289 68 362 301 58 26 chr15 14449243 14449399 -71246355 + L2 LINE L2 3079 3239 -33 260 250 36 24 chr15 14450618 14450702 -71245052 - MIR SINE MIR 0 262 178 3332 139 89 12 chr15 14450718 14451316 -71244438 + MER39B LTR ERV1 6 649 -4 291 284 75 15 chr15 14451321 14451455 -71244299 - MIR SINE MIR -93 169 28 405 0 0 0 chr15 14453399 14453444 -71242310 + (CTG)n Simple_repeat Simple_repeat 1 45 0 915 270 70 39 chr15 14454429 14454844 -71240910 + L2 LINE L2 2863 3290 -23 885 119 56 25 chr15 14455342 14455502 -71240252 - L1MA9 LINE L1 -38 6274 6110 398 235 0 12 chr15 14455502 14455583 -71240171 + Tigger5 DNA MER2_type 1 80 -2243 1896 160 99 8 chr15 14455623 14455924 -71239830 - L1MA9 LINE L1 -200 6112 5769 204 40 0 0 chr15 14455924 14455949 -71239805 + (CA)n Simple_repeat Simple_repeat 1 25 0 1896 160 99 8 chr15 14455949 14456022 -71239732 - L1MA9 LINE L1 -543 5769 5704 213 211 0 0 chr15 14456113 14456151 -71239603 + A-rich Low_complexity Low_complexity 5 42 0 360 198 33 11 chr15 14456507 14456598 -71239156 + MER5B DNA MER1_type 72 164 -14 653 271 49 31 chr15 14456763 14456858 -71238896 + MLT1L LTR MaLR 387 479 -136 2047 106 0 46 chr15 14456858 14457160 -71238594 + AluSx SINE Alu 15 302 -10 653 271 49 31 chr15 14457160 14457289 -71238465 + MLT1L LTR MaLR 479 615 0 3735 140 8 81 chr15 14459607 14460337 -71235417 - LTR8 LTR ERV1 -14 677 1 340 302 32 0 chr15 14460619 14460745 -71235009 - MIR SINE MIR -43 219 90 307 238 21 105 chr15 14461162 14461305 -71234449 - MIR SINE MIR -101 161 31 359 224 66 113 chr15 14461457 14461664 -71234090 - MER34 LTR ERV1 0 542 421 353 94 0 0 chr15 14461891 14461944 -71233810 - MADE1 DNA Mariner 0 80 28 405 258 86 105 chr15 14462942 14463069 -71232685 - MIR SINE MIR 0 262 134 2020 142 13 7 chr15 14463069 14463379 -71232375 - AluSx SINE Alu 0 312 1 405 258 86 105 chr15 14463379 14463518 -71232236 - MIR SINE MIR -128 134 1 1853 173 16 3 chr15 14464129 14464436 -71231318 - AluJb SINE Alu -1 311 1 189 351 0 0 chr15 14464910 14464984 -71230770 - MIR3 SINE MIR -37 171 98 380 280 32 32 chr15 14465447 14465572 -71230182 - L2 LINE L2 0 3313 3189 1324 171 106 8 chr15 14466170 14466434 -71229320 - AluJb SINE Alu -12 290 1 872 193 60 0 chr15 14468686 14468852 -71226902 - FRAM SINE Alu -2 174 1 243 0 0 0 chr15 14468859 14468886 -71226868 + (TG)n Simple_repeat Simple_repeat 2 28 0 2036 130 17 0 chr15 14468886 14469187 -71226567 - AluSp SINE Alu -7 306 1 254 269 0 0 chr15 14469477 14469529 -71226225 + LTR30 LTR ERV1 1 52 -670 422 202 44 28 chr15 14469529 14469715 -71226039 + LTR12 LTR ERV1 100 270 -444 294 207 0 69 chr15 14469722 14469809 -71225945 + LTR30 LTR ERV1 544 624 -98 666 117 63 0 chr15 14469809 14469924 -71225830 + LTR12 LTR ERV1 359 582 -132 348 242 84 11 chr15 14469965 14470060 -71225694 - L2 LINE L2 -1 3271 3170 646 267 54 23 chr15 14470309 14470530 -71225224 + MIR SINE MIR 35 262 0 252 262 233 0 chr15 14471178 14471281 -71224473 + MIR SINE MIR 17 143 -65 2210 111 10 0 chr15 14471670 14471977 -71223777 - AluSx SINE Alu -2 310 1 737 308 43 26 chr15 14472014 14472475 -71223279 - L1ME3 LINE L1 -277 5885 5417 409 302 16 0 chr15 14473586 14473715 -71222039 - MER94 DNA DNA -1 133 3 366 314 102 0 chr15 14473756 14473893 -71221861 + L2 LINE L2 3122 3272 0 339 254 123 14 chr15 14474317 14474455 -71221299 - MIR3 SINE MIR -5 203 51 2320 117 0 0 chr15 14475867 14476174 -71219580 + AluSx SINE Alu 3 309 -3 2305 100 0 0 chr15 14476311 14476602 -71219152 + AluSq SINE Alu 1 291 -22 1292 179 53 17 chr15 14476630 14476932 -71218822 - MER33 DNA MER1_type -11 313 1 1010 234 58 92 chr15 14477179 14477594 -71218160 - MLT1I LTR MaLR -3 406 6 259 315 65 28 chr15 14478130 14478238 -71217516 - MIR SINE MIR -62 146 35 1698 170 36 88 chr15 14478439 14478541 -71217213 + MLT1B LTR MaLR 1 107 -283 2177 112 10 0 chr15 14478541 14478835 -71216919 + AluSq SINE Alu 1 297 -16 1698 170 36 88 chr15 14478835 14479143 -71216611 + MLT1B LTR MaLR 107 390 0 204 40 0 0 chr15 14479490 14479515 -71216239 + (CA)n Simple_repeat Simple_repeat 1 25 0 523 212 218 21 chr15 14479551 14479744 -71216010 - MIR SINE MIR 0 262 32 377 274 0 11 chr15 14479894 14479989 -71215765 + L2 LINE L2 3214 3307 -6 21 0 0 0 chr15 14480694 14480715 -71215039 + AT_rich Low_complexity Low_complexity 1 21 0 1960 123 10 35 chr15 14480733 14481043 -71214711 - AluJo SINE Alu -10 302 1 1203 257 85 40 chr15 14481087 14481336 -71214418 - Charlie7 DNA MER1_type -1890 722 486 1751 148 9 90 chr15 14481336 14481668 -71214086 - AluJo SINE Alu -7 305 1 1203 257 85 40 chr15 14481668 14481924 -71213830 - Charlie7 DNA MER1_type -2126 486 194 716 143 8 0 chr15 14482797 14482923 -71212831 + CT-rich Low_complexity Low_complexity 1 127 0 1997 120 48 0 chr15 14482923 14483214 -71212540 - AluSx SINE Alu -7 305 1 2013 142 3 22 chr15 14483788 14484106 -71211648 + AluJb SINE Alu 1 312 0 212 299 140 9 chr15 14484847 14484954 -71210800 - L2 LINE L2 -5 3267 3147 2230 117 0 3 chr15 14485283 14485582 -71210172 - AluSq SINE Alu -15 298 1 189 0 0 0 chr15 14486200 14486221 -71209533 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 554 253 93 0 chr15 14486432 14486594 -71209160 - MER5B DNA MER1_type 0 178 2 333 294 76 8 chr15 14487818 14487937 -71207817 + MIR3 SINE MIR 73 199 -9 293 359 124 4 chr15 14488442 14488676 -71207078 - HAL1 LINE L1 -8 2499 2238 1793 167 17 3 chr15 14491418 14491711 -71204043 - AluJb SINE Alu -15 297 1 1313 262 135 18 chr15 14491985 14492481 -71203273 - MLT1H1 LTR MaLR -1 554 1 805 297 84 53 chr15 14492614 14493200 -71202554 - MLT1L LTR MaLR -4 611 8 231 196 107 0 chr15 14494573 14494629 -71201125 - MIR SINE MIR -79 183 122 825 216 0 29 chr15 14494989 14495160 -71200594 - FRAM SINE Alu 0 166 1 208 257 40 27 chr15 14495907 14495981 -71199773 + MIR SINE MIR 170 244 -18 209 250 16 31 chr15 14496229 14496293 -71199461 - L2 LINE L2 -191 3081 3019 1895 188 147 28 chr15 14496591 14497060 -71198694 + MLT1F LTR MaLR 9 533 -9 546 235 117 43 chr15 14497070 14497432 -71198322 + MLT1H LTR MaLR 31 586 -9 234 274 88 83 chr15 14497626 14497830 -71197924 - L2 LINE L2 -635 2679 2475 405 263 68 8 chr15 14499458 14499591 -71196163 - MIR3 SINE MIR -41 167 27 4700 154 21 20 chr15 14500552 14501057 -71194697 - L1MA8 LINE L1 -2 6289 5781 1594 121 27 5 chr15 14501057 14501281 -71194473 + MER30 DNA MER1_type 1 229 -1 4700 154 21 20 chr15 14501281 14501615 -71194139 - L1MA8 LINE L1 -510 5781 5449 1366 257 56 9 chr15 14501720 14502062 -71193692 - ERVL-F LTR ERVL -3629 2135 1778 763 318 86 66 chr15 14502060 14502484 -71193270 - ERVL-F LTR ERVL -4734 1030 616 * 2385 81 0 7 chr15 14502484 14502794 -71192960 - AluY SINE Alu -3 308 1 1359 218 21 14 chr15 14502804 14503089 -71192665 - AluJo SINE Alu -25 287 1 763 318 86 66 chr15 14503089 14503352 -71192402 - ERVL-F LTR ERVL -5156 608 318 491 127 9 100 chr15 14503376 14503486 -71192268 - MLT2F LTR ERVL 0 663 564 784 288 45 36 chr15 14503571 14503929 -71191825 + L1MEd LINE L1 423 783 -5747 189 0 0 0 chr15 14503971 14503992 -71191762 + (A)n Simple_repeat Simple_repeat 1 21 0 316 326 28 35 chr15 14503995 14504136 -71191618 + L1MEd LINE L1 813 952 -5578 555 306 24 45 chr15 14504483 14504643 -71191111 + L1MEd LINE L1 2454 2616 -3924 2181 109 19 22 chr15 14504643 14504956 -71190798 + AluSx SINE Alu 1 312 0 555 306 24 45 chr15 14504956 14505481 -71190273 + L1MEd LINE L1 2616 3123 -3417 385 283 0 11 chr15 14505482 14505574 -71190180 - MER5B DNA MER1_type -87 91 1 952 114 0 0 chr15 14505886 14506009 -71189745 + FLAM_C SINE Alu 1 123 -20 225 235 0 20 chr15 14506744 14506795 -71188959 + L2 LINE L2 3136 3185 -87 807 254 142 44 chr15 14506816 14507182 -71188572 + MLT1I LTR MaLR 7 408 -1 314 217 33 0 chr15 14507182 14507242 -71188512 + L2 LINE L2 3202 3263 -9 188 279 0 0 chr15 14507290 14507333 -71188421 + L2 LINE L2 3222 3264 -8 1643 182 0 32 chr15 14507356 14507664 -71188090 - AluJo SINE Alu -14 298 1 457 338 82 24 chr15 14508653 14508938 -71186816 + L2 LINE L2 2768 3066 -247 2052 235 67 23 chr15 14509279 14509879 -71185875 + L1MC4a LINE L1 5195 5315 -831 2243 117 85 20 chr15 14509879 14510221 -71185533 - THE1B LTR MaLR 0 364 1 2052 235 67 23 chr15 14510221 14510270 -71185484 + L1MC4a LINE L1 5315 5360 -786 289 291 103 0 chr15 14510887 14511004 -71184750 - LTR16C LTR ERVL -87 404 276 430 306 28 22 chr15 14511053 14511233 -71184521 - L1MC4a LINE L1 -1880 5928 5748 494 298 80 31 chr15 14512783 14513117 -71182637 - L1MC4a LINE L1 -688 5466 5150 219 114 0 0 chr15 14513117 14513152 -71182602 + (TA)n Simple_repeat Simple_repeat 1 35 0 494 298 80 31 chr15 14513152 14513689 -71182065 - L1MC4a LINE L1 -1004 5150 4567 21 0 0 0 chr15 14513737 14513758 -71181996 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 14513839 14513860 -71181894 + AT_rich Low_complexity Low_complexity 1 21 0 783 140 9 0 chr15 14514687 14514801 -71180953 + AluJb SINE Alu 2 116 -196 1139 137 55 6 chr15 14514877 14515060 -71180694 + AluJb SINE Alu 112 303 -9 1013 116 7 0 chr15 14515101 14515239 -71180515 - MER20 DNA MER1_type -48 171 33 1165 216 14 5 chr15 14516728 14516950 -71178804 - MER58A DNA MER1_type 0 224 1 327 256 25 106 chr15 14517655 14517854 -71177900 - L2 LINE L2 -119 3194 3012 384 263 59 63 chr15 14517962 14518296 -71177458 + L1ME4a LINE L1 5784 6110 -11 736 160 59 53 chr15 14518609 14518796 -71176958 - MER53 DNA DNA -1 188 1 519 296 53 6 chr15 14519133 14519302 -71176452 + MER5B DNA MER1_type 1 177 -1 546 196 20 0 chr15 14519410 14519512 -71176242 - MER5A DNA MER1_type -77 112 9 398 200 132 93 chr15 14520037 14520250 -71175504 + MIR SINE MIR 28 262 0 282 351 108 5 chr15 14521225 14521410 -71174344 - MIR SINE MIR 0 262 59 4056 29 0 4 chr15 14521509 14521956 -71173798 + L1PA5 LINE L1 5703 6149 -5 207 0 0 0 chr15 14521956 14521979 -71173775 + (TA)n Simple_repeat Simple_repeat 2 24 0 577 242 39 0 chr15 14522266 14522419 -71173335 + MER103 DNA DNA 7 165 -1 347 212 40 50 chr15 14522622 14522721 -71173033 - MLT1G LTR MaLR -290 300 203 233 48 71 0 chr15 14522740 14522782 -71172972 + MER5A DNA MER1_type 68 112 -77 779 278 206 19 chr15 14522901 14523388 -71172366 - MLT1H1 LTR MaLR -8 547 1 686 312 50 53 chr15 14523605 14524245 -71171509 - L2 LINE L2 -11 3302 2666 2149 121 0 7 chr15 14524245 14524542 -71171212 + AluSx SINE Alu 1 295 -17 686 312 50 53 chr15 14524542 14524634 -71171120 - L2 LINE L2 -647 2666 2575 257 284 15 0 chr15 14526101 14526168 -71169586 + GA-rich Low_complexity Low_complexity 6 73 0 1383 141 74 84 chr15 14526296 14526594 -71169160 + AluJo SINE Alu 1 295 -17 2565 11 0 0 chr15 14527488 14527765 -71167989 + AluYa5 SINE Alu 29 305 -6 413 273 118 11 chr15 14528038 14528237 -71167517 + MIR SINE MIR 37 255 -7 213 301 41 0 chr15 14528454 14528527 -71167227 - MIR3 SINE MIR -23 185 110 520 287 10 41 chr15 14529419 14529614 -71166140 - LTR16B LTR ERVL 0 464 276 906 114 8 0 chr15 14529767 14529898 -71165856 - AluSp/q SINE Alu -12 301 170 2218 113 36 0 chr15 14530484 14530785 -71164969 - AluSx SINE Alu 0 312 1 237 325 92 8 chr15 14530825 14530945 -71164809 - LTR67 LTR ERVL -76 481 352 194 0 0 37 chr15 14531502 14531529 -71164225 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2247 74 0 4 chr15 14532372 14532643 -71163111 + AluY SINE Alu 3 272 -39 1052 185 39 13 chr15 14532721 14532953 -71162801 - L1MB3 LINE L1 -5 6178 5941 215 316 52 96 chr15 14533699 14533835 -71161919 + L2 LINE L2 3137 3266 -6 * 357 257 119 0 chr15 14533803 14533904 -71161850 - L2 LINE L2 0 3313 3201 441 103 0 0 chr15 14536164 14536232 -71159522 + (CA)n Simple_repeat Simple_repeat 2 69 0 450 276 209 24 chr15 14536612 14536822 -71158932 - MIR SINE MIR -1 261 13 340 290 46 0 chr15 14537117 14537248 -71158506 + MIR SINE MIR 125 261 -1 211 268 86 35 chr15 14538011 14538180 -71157574 - MIR3 SINE MIR -70 192 15 493 273 20 0 chr15 14538318 14538468 -71157286 - MER103 DNA DNA -13 153 1 2286 90 0 27 chr15 14538993 14539294 -71156460 + AluSg SINE Alu 1 293 -17 253 179 0 0 chr15 14539636 14539675 -71156079 + MER34 LTR ERV1 7 45 -497 1982 211 57 13 chr15 14539678 14540134 -71155620 + MER39 LTR ERV1 232 707 0 27 0 0 0 chr15 14540955 14540982 -71154772 + AT_rich Low_complexity Low_complexity 1 27 0 282 241 38 0 chr15 14540999 14541078 -71154676 - MIR SINE MIR -77 185 104 224 220 0 11 chr15 14541204 14541232 -71154522 + (CA)n Simple_repeat Simple_repeat 1 28 -62 1857 160 95 45 chr15 14541232 14541675 -71154079 - MER31B LTR ERV1 -1 465 1 224 220 0 11 chr15 14541675 14541737 -71154017 + (CA)n Simple_repeat Simple_repeat 28 90 0 1375 200 27 37 chr15 14541793 14542093 -71153661 + AluJo SINE Alu 1 297 -15 2061 136 57 0 chr15 14542248 14542580 -71153174 - MER34B LTR ERV1 0 565 215 404 241 173 0 chr15 14542580 14542713 -71153041 - MER57A LTR ERV1 -53 350 195 1226 189 46 18 chr15 14542739 14543069 -71152685 - MER34B LTR ERV1 -281 222 1 892 224 57 99 chr15 14543476 14543794 -71151960 + LTR37A LTR ERV1 19 320 -106 2461 55 7 0 chr15 14543794 14544084 -71151670 - AluY SINE Alu -19 292 1 892 224 57 99 chr15 14544084 14544148 -71151606 + LTR37A LTR ERV1 320 385 -41 1134 187 66 116 chr15 14544191 14544571 -71151183 - MER39 LTR ERV1 -41 666 306 243 130 0 22 chr15 14544702 14544748 -71151006 + LTR37A LTR ERV1 382 426 0 1339 160 112 75 chr15 14545468 14545799 -71149955 + MER2 DNA MER2_type 1 343 -1 314 259 12 12 chr15 14545849 14545934 -71149820 + MER5A DNA MER1_type 4 88 -101 285 260 0 13 chr15 14545878 14545955 -71149799 - MER5A DNA MER1_type -22 167 92 * 473 296 15 0 chr15 14546249 14546384 -71149370 + MIR SINE MIR 2 138 -124 2778 121 100 55 chr15 14546390 14546950 -71148804 + MER34C LTR ERV1 1 585 0 218 292 22 34 chr15 14547012 14547101 -71148653 + MIR SINE MIR 175 262 0 2170 112 20 0 chr15 14547142 14547445 -71148309 + AluSq SINE Alu 1 309 -4 1708 171 42 0 chr15 14548394 14548681 -71147073 + AluJo SINE Alu 1 299 -13 243 235 30 68 chr15 14548697 14548829 -71146925 + MIR SINE MIR 69 195 -67 682 262 65 65 chr15 14548992 14549359 -71146395 - MLT1L LTR MaLR -248 367 1 202 268 84 0 chr15 14549475 14549546 -71146208 - MIR SINE MIR -49 213 137 5209 31 5 0 chr15 14549555 14550163 -71145591 - L1PA4 LINE L1 -3 6152 5542 5732 32 0 0 chr15 14550164 14550841 -71144913 + L1P LINE L1 2250 2926 -3220 221 298 202 11 chr15 14550942 14551036 -71144718 - MIR SINE MIR -124 138 27 298 244 24 12 chr15 14552588 14552670 -71143084 + MIR SINE MIR 69 151 -57 21 36 0 0 chr15 14552690 14552718 -71143036 + AT_rich Low_complexity Low_complexity 1 28 0 185 211 0 0 chr15 14553266 14553304 -71142450 - MIR3 SINE MIR -49 159 122 426 243 97 83 chr15 14553315 14553497 -71142257 + L1ME4a LINE L1 5590 5779 -342 2075 62 12 4 chr15 14553497 14553753 -71142001 - AluY SINE Alu -4 307 50 426 243 97 83 chr15 14553753 14553858 -71141896 + L1ME4a LINE L1 5779 5881 -240 697 170 0 0 chr15 14554351 14554457 -71141297 - LTR26B LTR ERV1 0 531 426 3084 117 16 43 chr15 14554457 14555075 -71140679 - MER4B LTR ERV1 0 779 1 1216 131 68 1 chr15 14555075 14555288 -71140466 - LTR26B LTR ERV1 -102 429 235 227 300 0 0 chr15 14555302 14555372 -71140382 + (CA)n Simple_repeat Simple_repeat 1 70 0 2427 95 0 3 chr15 14556359 14556665 -71139089 - AluSq SINE Alu -8 305 1 400 275 101 34 chr15 14559561 14559739 -71136015 + MIR SINE MIR 2 191 -71 41636 69 4 3 chr15 14559752 14565888 -71129866 - L1PA5 LINE L1 -6 6148 5 244 157 20 0 chr15 14566355 14566406 -71129348 - L1MC1 LINE L1 -1 6332 6281 1589 172 4 0 chr15 14566439 14566706 -71129048 - L1MC1 LINE L1 -45 6288 6021 362 147 207 164 chr15 14566984 14567159 -71128595 - ORSL DNA AcHobo 0 275 86 1896 165 6 22 chr15 14567159 14567475 -71128279 - AluJb SINE Alu -1 311 1 362 147 207 164 chr15 14567475 14567531 -71128223 - ORSL DNA AcHobo -189 86 34 399 310 105 0 chr15 14569727 14569898 -71125856 - MIR SINE MIR -72 190 2 555 241 47 51 chr15 14570237 14570490 -71125264 - MER112 DNA MER1_type -2 254 3 359 265 10 0 chr15 14570561 14570659 -71125095 + L2 LINE L2 2680 2778 -536 254 265 10 41 chr15 14571457 14571555 -71124199 + L2 LINE L2 3161 3255 -58 402 333 115 11 chr15 14571889 14572159 -71123595 - L2 LINE L2 -463 2851 2554 32800 100 13 50 chr15 14572588 14578992 -71116762 + L1PA7 LINE L1 1 6459 -10 210 247 0 47 chr15 14579457 14579542 -71116212 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 399 282 118 35 chr15 14580855 14581025 -71114729 + MIR SINE MIR 35 218 -44 1422 164 5 0 chr15 14632196 14632416 -71063338 - MLT2B2 LTR ERVL -294 221 1 662 310 270 19 chr15 14633011 14633682 -71062072 + L3 LINE CR1 728 1566 -11 951 303 85 6 chr15 14634845 14635175 -71060579 - LTR33 LTR ERVL -165 356 1 2362 180 0 5 chr15 14635781 14636148 -71059606 - MLT1A1 LTR MaLR 0 365 1 294 163 50 75 chr15 14636301 14636335 -71059419 - MLT1H1 LTR MaLR 0 555 522 1887 184 31 20 chr15 14636335 14636693 -71059061 - MLT1A1 LTR MaLR -3 362 1 294 163 50 75 chr15 14636693 14636738 -71059016 - MLT1H1 LTR MaLR -33 522 478 282 260 10 0 chr15 14637003 14637099 -71058655 + L1MEc LINE L1 1619 1715 -5006 455 298 116 31 chr15 14637139 14637616 -71058138 + L1MEc LINE L1 2400 2936 -3604 6181 143 113 8 chr15 14637616 14638730 -71057024 + Tigger3b DNA MER2_type 1 1231 0 455 298 116 31 chr15 14638730 14638817 -71056937 + L1MEc LINE L1 2936 3014 -3526 232 315 34 62 chr15 14638989 14639135 -71056619 - MLT1I LTR MaLR -169 240 99 563 279 141 46 chr15 14639339 14639951 -71055803 + L1MEc LINE L1 3238 3907 -2633 1921 149 30 0 chr15 14640046 14640341 -71055413 + AluSx SINE Alu 1 304 -8 200 222 0 0 chr15 14640541 14640586 -71055168 + (TA)n Simple_repeat Simple_repeat 2 46 0 2069 95 4 0 chr15 14641391 14641665 -71054089 - AluY SINE Alu -36 275 1 24 0 0 0 chr15 14641665 14641689 -71054065 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr15 14642910 14642938 -71052816 + AT_rich Low_complexity Low_complexity 1 28 0 201 241 98 107 chr15 14643142 14643254 -71052500 - L2 LINE L2 -1 3271 3161 184 281 123 0 chr15 14643946 14644003 -71051751 + L2 LINE L2 3169 3232 -40 181 364 133 7 chr15 14645448 14645599 -71050155 + MIR3 SINE MIR 20 189 -19 528 241 18 0 chr15 14645825 14645937 -71049817 + MER81 DNA DNA 1 114 0 2402 100 7 0 chr15 14646239 14646549 -71049205 - AluSx SINE Alu 0 312 1 382 265 163 34 chr15 14648300 14648447 -71047307 + MIR3 SINE MIR 33 198 -10 2596 140 13 75 chr15 14649196 14649719 -71046035 - L1MC3 LINE L1 0 7785 7295 1034 154 86 45 chr15 14649858 14650078 -71045676 - L1MC3 LINE L1 -501 7284 7056 320 352 162 23 chr15 14650415 14651069 -71044685 + L2 LINE L2 2000 2744 -570 645 305 47 0 chr15 14651774 14651987 -71043767 - MIR SINE MIR -32 230 8 2818 6 0 28 chr15 14652019 14652340 -71043414 + AluYb8 SINE Alu 1 312 -6 323 269 54 78 chr15 14653366 14653533 -71042221 + MIR SINE MIR 45 207 -55 432 299 106 27 chr15 14654525 14654710 -71041044 + MIR3 SINE MIR 3 203 -59 854 215 77 19 chr15 14654828 14655037 -71040717 - MER45C DNA AcHobo 0 953 733 280 288 15 0 chr15 14655064 14655130 -71040624 - MER45C DNA AcHobo -299 654 588 1918 178 125 18 chr15 14655148 14655531 -71040223 + MSTB LTR MaLR 1 424 -2 799 271 82 22 chr15 14655738 14656007 -71039747 - MER45C DNA AcHobo -666 287 3 193 306 180 9 chr15 14656033 14656144 -71039610 - MIR SINE MIR -88 174 45 1390 108 51 0 chr15 14656903 14657117 -71038637 + LTR39 LTR ERV1 1 225 -558 2880 165 114 13 chr15 14657117 14657663 -71038091 - LTR36 LTR ERV1 0 611 11 3518 154 13 4 chr15 14657671 14658228 -71037526 + LTR39 LTR ERV1 221 782 -1 399 287 201 6 chr15 14658905 14659079 -71036675 + MIR SINE MIR 29 236 -26 240 35 0 0 chr15 14660081 14660110 -71035644 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 343 289 82 35 chr15 14661224 14661377 -71034377 - MIR SINE MIR -58 150 42 192 231 0 0 chr15 14661400 14661439 -71034315 + MIR SINE MIR 105 143 -65 700 251 17 28 chr15 14662255 14662434 -71033320 + MER5B DNA MER1_type 1 177 -1 501 295 61 7 chr15 14662977 14663199 -71032555 + MIR SINE MIR 24 255 -7 271 170 21 0 chr15 14663940 14663987 -71031767 - L2 LINE L2 -18 3254 3207 2447 68 0 0 chr15 14665196 14665489 -71030265 + AluY SINE Alu 1 293 -18 700 159 26 0 chr15 14665686 14665799 -71029955 - FLAM_C SINE Alu -1 142 27 50 31 0 0 chr15 14666861 14666925 -71028829 + AT_rich Low_complexity Low_complexity 1 64 0 291 239 74 37 chr15 14666929 14667092 -71028662 + MER113 DNA MER1_type? 2 170 -351 229 250 31 16 chr15 14667127 14667191 -71028563 + MER113 DNA MER1_type? 454 518 -3 246 32 0 0 chr15 14668604 14668635 -71027119 + (TG)n Simple_repeat Simple_repeat 2 32 0 347 261 68 50 chr15 14669449 14669558 -71026196 + MIR3 SINE MIR 44 158 -50 1520 218 3 7 chr15 14669558 14669847 -71025907 - AluJo SINE Alu -23 289 2 347 261 68 50 chr15 14669847 14669898 -71025856 + MIR3 SINE MIR 158 207 -1 476 276 26 0 chr15 14670024 14670140 -71025614 + MIR SINE MIR 59 177 -85 718 253 0 22 chr15 14671788 14671970 -71023784 + MER5B DNA MER1_type 1 178 0 291 54 0 0 chr15 14672128 14672165 -71023589 + (CA)n Simple_repeat Simple_repeat 2 38 0 465 307 80 7 chr15 14672302 14672452 -71023302 + MIR3 SINE MIR 32 192 -16 205 129 0 0 chr15 14672618 14672649 -71023105 + MIR SINE MIR 47 77 -131 1634 157 23 20 chr15 14672752 14673058 -71022696 + AluJb SINE Alu 1 307 -5 353 283 107 23 chr15 14673804 14673981 -71021773 + MER117 DNA MER1_type 1 192 -5 205 254 91 0 chr15 14675158 14675213 -71020541 - L3 LINE CR1 -7 1570 1511 211 182 0 105 chr15 14675502 14675568 -71020186 - MIR SINE MIR -60 148 102 21 36 0 0 chr15 14675817 14675845 -71019909 + AT_rich Low_complexity Low_complexity 1 28 0 37673 91 14 8 chr15 14675845 14681940 -71013814 - L1PA6 LINE L1 -13 6141 11 285 364 31 16 chr15 14682662 14682791 -71012963 - MIR SINE MIR -108 154 24 1755 273 33 27 chr15 14683057 14683570 -71012184 + LTR33 LTR ERVL 3 518 -3 243 317 3 26 chr15 14684130 14684244 -71011510 + MIR SINE MIR 1 110 -98 388 296 30 7 chr15 14684475 14684610 -71011144 + MERVL LTR ERVL 3201 3338 -2147 681 269 77 24 chr15 14684620 14684974 -71010780 - MLT1C LTR MaLR -2 465 78 43350 37 23 1 chr15 14684980 14690994 -71004760 + L1PA3 LINE L1 4 6155 0 1724 91 0 5 chr15 14691084 14691305 -71004449 - L1PA8 LINE L1 -14 6158 5939 452 287 41 0 chr15 14691353 14691475 -71004279 + MERVL LTR ERVL 3383 3509 -2255 1202 349 88 11 chr15 14691518 14692268 -71003486 + MERVL LTR ERVL 3544 4351 -1303 717 371 57 14 chr15 14692504 14693135 -71002619 + MERVL LTR ERVL 4682 5339 -315 1841 141 57 3 chr15 14693426 14693723 -71002031 - AluSq SINE Alu 0 313 1 787 271 72 12 chr15 14693725 14694130 -71001624 + LTR33 LTR ERVL 31 514 -7 370 316 44 0 chr15 14694495 14694609 -71001145 - L2 LINE L2 -2 3311 3193 194 196 0 89 chr15 14697184 14697240 -70998514 + L2 LINE L2 3262 3312 -1 1048 127 0 11 chr15 14697341 14697380 -70998374 + (TTCC)n Simple_repeat Simple_repeat 1 217 0 1048 127 0 11 chr15 14697380 14697561 -70998193 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 2822 222 87 33 chr15 14698881 14699654 -70996100 - L1ME1 LINE L1 -18 6148 5327 234 0 0 0 chr15 14699654 14699680 -70996074 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 2822 222 87 33 chr15 14699680 14699721 -70996033 - L1ME1 LINE L1 -839 5327 5290 * 33174 104 10 56 chr15 14699720 14706153 -70989601 - L1PA7 LINE L1 -20 6134 12 467 123 49 0 chr15 14706187 14706268 -70989486 - L1MA6 LINE L1 0 6300 6216 260 191 36 24 chr15 14706329 14706346 -70989408 - L1ME1 LINE L1 -870 5276 5261 1809 75 34 41 chr15 14706346 14706614 -70989140 - L1MA1 LINE L1 0 6302 6037 260 191 36 24 chr15 14706614 14706680 -70989074 - L1ME1 LINE L1 -885 5261 5192 1320 286 78 13 chr15 14706858 14707320 -70988434 - L2 LINE L2 0 3313 2822 1990 199 54 7 chr15 14707346 14707753 -70988001 + MER63B DNA MER1_type 1 426 -10 3399 256 94 35 chr15 14707766 14708963 -70986791 - L2 LINE L2 -481 2833 1567 379 354 75 54 chr15 14709121 14709548 -70986206 + L2 LINE L2 1261 1696 -1618 208 344 53 26 chr15 14709827 14709978 -70985776 - L3b LINE CR1 -208 1375 1221 275 264 172 0 chr15 14710892 14710979 -70984775 + MIR3 SINE MIR 100 201 -7 502 325 98 20 chr15 14711916 14712211 -70983543 - MLT1I LTR MaLR -11 398 81 400 357 53 65 chr15 14713387 14713743 -70982011 - L2 LINE L2 0 3272 2921 726 279 44 24 chr15 14713955 14714206 -70981548 + MIR SINE MIR 1 256 -6 2037 35 0 0 chr15 14714290 14714521 -70981233 - L1PA4 LINE L1 0 6155 5925 207 0 0 0 chr15 14714783 14714806 -70980948 + (TTG)n Simple_repeat Simple_repeat 2 24 0 229 255 20 41 chr15 14715111 14715139 -70980615 + LTR67 LTR ERVL 457 551 -5 267 261 14 0 chr15 14715139 14715208 -70980546 + MLT1K LTR MaLR 513 582 -6 219 339 70 17 chr15 14715453 14715568 -70980186 - L2 LINE L2 -223 3049 2929 183 179 103 0 chr15 14715577 14715616 -70980138 - L2 LINE L2 -6 3266 3224 7262 78 3 1 chr15 14715728 14717026 -70978728 + L1PA8 LINE L1 4871 6170 -2 290 125 12 113 chr15 14717084 14717164 -70978590 - L1M4 LINE L1 -1899 4247 4176 297 254 173 0 chr15 14717210 14717320 -70978434 + L2 LINE L2 1214 1342 -1972 1205 45 0 32 chr15 14717420 14717576 -70978178 + L1PA6 LINE L1 6004 6154 0 948 138 7 0 chr15 14718001 14718153 -70977601 - L1MA4 LINE L1 -8 6292 6140 243 250 59 15 chr15 14718259 14718327 -70977427 + MIR SINE MIR 118 188 -74 444 304 78 70 chr15 14719752 14720097 -70975657 + L2 LINE L2 2922 3269 -3 457 360 101 29 chr15 14720189 14720597 -70975157 + L3b LINE CR1 1108 1544 -39 1990 199 70 41 chr15 14722927 14723410 -70972344 - MLT1D LTR MaLR -8 497 1 514 342 53 13 chr15 14723558 14723786 -70971968 + MIR SINE MIR 18 254 -8 290 95 0 0 chr15 14723786 14723828 -70971926 + MADE1 DNA Mariner 39 80 0 605 242 105 0 chr15 14724922 14725075 -70970679 - MLT1H LTR MaLR 0 549 381 948 253 20 29 chr15 14725110 14725355 -70970399 - MLT1H LTR MaLR -247 302 60 27 29 0 0 chr15 14725428 14725462 -70970292 + AT_rich Low_complexity Low_complexity 1 34 0 2761 97 16 11 chr15 14725594 14725967 -70969787 + THE1C LTR MaLR 1 375 0 2347 190 33 2 chr15 14726552 14726978 -70968776 - L1MB1 LINE L1 -1 6167 5729 2417 133 11 49 chr15 14726992 14727445 -70968309 + L1MB1 LINE L1 5296 5731 -437 227 238 0 32 chr15 14728388 14728451 -70967303 + L2 LINE L2 3201 3261 -11 331 292 85 15 chr15 14732232 14732362 -70963392 + MIR SINE MIR 124 262 0 688 264 102 0 chr15 14732837 14733034 -70962720 - MIR SINE MIR -1 261 45 233 237 84 99 chr15 14733334 14733465 -70962289 - MIR3 SINE MIR -46 162 34 1571 110 0 0 chr15 14733569 14733769 -70961985 + AluSg/x SINE Alu 98 297 -13 13880 91 10 3 chr15 14734375 14736975 -70958779 - L1PA7 LINE L1 0 6154 3523 2014 99 0 37 chr15 14737049 14737343 -70958411 - AluY SINE Alu -5 306 24 44521 43 3 2 chr15 14737739 14743882 -70951872 - L1PA3 LINE L1 0 6155 2 192 297 33 33 chr15 14744176 14744267 -70951487 - L2 LINE L2 0 3313 3223 2250 87 0 20 chr15 14744315 14744613 -70951141 - AluY SINE Alu -19 292 1 322 309 64 0 chr15 14744793 14744903 -70950851 + L2 LINE L2 3160 3276 -37 2217 132 0 0 chr15 14746463 14746767 -70948987 - AluSc SINE Alu -5 304 1 1202 154 0 0 chr15 14747942 14748117 -70947637 + AluJo SINE Alu 1 175 -137 188 328 60 15 chr15 14748241 14748308 -70947446 - MIR3 SINE MIR -42 166 97 1888 170 3 3 chr15 14748753 14749114 -70946640 - AluJo SINE Alu 0 361 1 2530 67 0 6 chr15 14749663 14749975 -70945779 - AluY SINE Alu 0 311 2 24 32 0 0 chr15 14750358 14750389 -70945365 + AT_rich Low_complexity Low_complexity 1 31 0 2706 49 0 0 chr15 14750835 14751143 -70944611 + AluY SINE Alu 1 308 -3 28 0 0 0 chr15 14751404 14751432 -70944322 + AT_rich Low_complexity Low_complexity 1 28 0 925 284 52 52 chr15 14751943 14752439 -70943315 - L2 LINE L2 0 3313 2818 1594 234 64 51 chr15 14752481 14752951 -70942803 - MER45C DNA AcHobo 0 953 478 1401 274 18 0 chr15 14753010 14753349 -70942405 - MER45C DNA AcHobo -600 353 9 371 254 239 24 chr15 14753356 14753453 -70942301 - L2 LINE L2 -518 2796 2721 2119 128 0 3 chr15 14753453 14753758 -70941996 + AluSx SINE Alu 1 304 -8 371 254 239 24 chr15 14753758 14753869 -70941885 - L2 LINE L2 -593 2721 2543 21 0 0 0 chr15 14754100 14754121 -70941633 + AT_rich Low_complexity Low_complexity 1 21 0 9515 45 1 9 chr15 14754342 14754390 -70941364 + L1P LINE L1 4061 4108 -2038 7724 39 23 0 chr15 14754390 14755319 -70940435 - L1PA5 LINE L1 0 6154 5224 9515 45 1 9 chr15 14755319 14756436 -70939318 + L1PA5 LINE L1 4108 5217 -929 298 260 9 151 chr15 14758612 14758831 -70936923 - MIR3 SINE MIR -3 205 18 547 322 105 30 chr15 14759868 14760163 -70935591 - L2 LINE L2 -17 3255 2939 530 69 97 0 chr15 14762198 14762270 -70933484 + MADE1 DNA Mariner 2 80 0 701 238 52 43 chr15 14763661 14763833 -70931921 - L2 LINE L2 -1 3312 3136 1261 232 42 62 chr15 14763833 14764234 -70931520 + MLT2C1 LTR ERVL 1 393 -4 701 238 52 43 chr15 14764234 14764292 -70931462 - L2 LINE L2 -177 3136 3080 245 271 49 62 chr15 14765461 14765605 -70930149 - L2 LINE L2 0 3313 3172 218 328 0 0 chr15 14765947 14766008 -70929746 + L2 LINE L2 3249 3309 -4 279 81 0 0 chr15 14766465 14766502 -70929252 - AluSp SINE Alu -133 170 134 21 57 0 0 chr15 14766832 14766867 -70928887 + AT_rich Low_complexity Low_complexity 1 35 0 285 29 0 0 chr15 14766970 14767004 -70928750 + (TG)n Simple_repeat Simple_repeat 2 35 0 364 299 58 19 chr15 14767307 14767461 -70928293 - MIR SINE MIR -4 258 99 417 356 78 7 chr15 14769020 14769304 -70926450 + L2 LINE L2 2298 2601 -713 1320 210 45 0 chr15 14770632 14770875 -70924879 + Tigger7 DNA MER2_type 2 255 -2232 303 256 26 0 chr15 14770873 14770951 -70924803 + Tigger7 DNA MER2_type 2408 2487 0 * 5377 141 40 0 chr15 14772106 14772984 -70922770 - L1MA4 LINE L1 0 6300 5388 521 200 0 92 chr15 14773134 14773264 -70922490 - MLT1I LTR MaLR 0 409 292 2995 171 5 56 chr15 14773332 14773905 -70921849 + MLT2B3 LTR ERVL 3 546 -8 317 91 0 0 chr15 14773948 14773992 -70921762 + tRNA-Cys-TGC tRNA tRNA 2 45 -30 523 138 53 32 chr15 14774089 14774183 -70921571 - L1MC2 LINE L1 -13 6331 6236 1481 188 14 17 chr15 14774234 14774521 -70921233 - AluJb SINE Alu -26 286 1 360 100 22 133 chr15 14774522 14774612 -70921142 - L1MC2 LINE L1 -1931 5854 5775 510 254 34 0 chr15 14774623 14774741 -70921013 - MLT1I LTR MaLR -277 132 11 2784 155 9 7 chr15 14775041 14775474 -70920280 + MER57B LTR ERV1 1 434 0 1151 214 255 23 chr15 14775571 14776153 -70919601 - LTR50 LTR ERVL -43 683 1 349 306 155 27 chr15 14776705 14776924 -70918830 + MIR SINE MIR 6 252 -10 444 222 196 26 chr15 14777987 14778181 -70917573 - MLT1L LTR MaLR -46 569 343 411 207 24 134 chr15 14778350 14778401 -70917353 - MIR SINE MIR 0 262 207 1970 131 0 0 chr15 14778401 14778698 -70917056 - AluSx SINE Alu 0 307 11 411 207 24 134 chr15 14778698 14778809 -70916945 - MIR SINE MIR -55 207 117 574 242 51 66 chr15 14778810 14779066 -70916688 - MER112 DNA MER1_type -1 259 8 452 260 58 0 chr15 14779077 14779181 -70916573 - MIR SINE MIR -151 111 2 218 305 182 13 chr15 14779505 14779659 -70916095 - MIR3 SINE MIR -13 195 16 210 71 0 0 chr15 14779916 14779944 -70915810 + (T)n Simple_repeat Simple_repeat 1 28 0 206 313 0 50 chr15 14781196 14781276 -70914478 + MIR3 SINE MIR 10 85 -123 359 117 39 71 chr15 14781328 14781482 -70914272 + (TA)n Simple_repeat Simple_repeat 2 150 0 257 250 171 29 chr15 14781482 14781622 -70914132 - MIR SINE MIR -101 161 2 * 289 266 94 31 chr15 14781622 14781737 -70914017 + MIR3 SINE MIR 79 201 -7 7072 69 25 0 chr15 14783497 14784640 -70911114 + L1PA8 LINE L1 5006 6170 -2 290 125 12 113 chr15 14784698 14784778 -70910976 - L1M4 LINE L1 -1899 4247 4176 832 246 102 35 chr15 14784824 14785109 -70910645 + L2 LINE L2 1214 1517 -1797 961 296 141 22 chr15 14785110 14785941 -70909813 - L1M4 LINE L1 -2327 3819 2890 36 40 0 0 chr15 14786134 14786184 -70909570 + AT_rich Low_complexity Low_complexity 1 50 0 851 222 19 3 chr15 14786291 14786559 -70909195 - MLT1A1 LTR MaLR 0 365 1 226 203 177 63 chr15 14787232 14787390 -70908364 - L1ME4a LINE L1 -18 6103 5928 1797 165 28 3 chr15 14787682 14787973 -70907781 + AluSx SINE Alu 1 298 -14 1361 266 81 16 chr15 14838538 14839223 -70856531 + L2 LINE L2 2587 3313 0 2035 47 16 0 chr15 14840005 14840262 -70855492 - L1PA7 LINE L1 -2 6152 5892 858 108 0 0 chr15 14840527 14840647 -70855107 + AluSq/x SINE Alu 1 120 -193 1281 88 0 0 chr15 14842283 14842442 -70853312 - AluSc SINE Alu -150 159 1 254 380 0 0 chr15 14843080 14843222 -70852532 - MER117 DNA MER1_type 0 197 56 877 137 0 0 chr15 14843433 14843572 -70852182 + MER4B LTR ERV1 1 139 -471 193 250 0 0 chr15 14844322 14844362 -70851392 - L2 LINE L2 -253 3060 3021 2163 73 0 7 chr15 14844362 14844635 -70851119 - AluY SINE Alu -10 301 31 888 113 14 0 chr15 14844635 14844776 -70850978 - L1PA15-16 LINE L1 -4976 1873 1731 1257 232 21 18 chr15 14844785 14845112 -70850642 - L1PA15-16 LINE L1 -5257 1592 1265 1202 131 44 0 chr15 14845272 14845478 -70850276 - L1PB2 LINE L1 0 6151 5937 1489 221 3 3 chr15 14845578 14845881 -70849873 + MLT1A1 LTR MaLR 36 338 -27 395 233 200 9 chr15 14845892 14846011 -70849743 + MER112 DNA MER1_type 1 96 -160 768 11 0 0 chr15 14846011 14846100 -70849654 + (CTATG)n Simple_repeat Simple_repeat 2 90 0 395 233 200 9 chr15 14846100 14846195 -70849559 + MER112 DNA MER1_type 96 256 0 339 374 88 3 chr15 14846383 14846677 -70849077 - L2 LINE L2 -1274 2040 1722 1383 120 15 5 chr15 14847380 14847580 -70848174 - AluSc SINE Alu -3 306 105 21 0 0 0 chr15 14847789 14847810 -70847944 + AT_rich Low_complexity Low_complexity 1 21 0 222 405 24 0 chr15 14849274 14849400 -70846354 + L3 LINE CR1 1446 1574 -3 286 258 21 43 chr15 14850391 14850484 -70845270 + L2 LINE L2 3175 3265 -48 2803 10 0 3 chr15 14850708 14851019 -70844735 - AluYa5 SINE Alu 0 311 2 828 270 115 32 chr15 14851477 14851980 -70843774 - L1ME3A LINE L1 -5 6165 5621 2076 116 10 10 chr15 14851991 14852284 -70843470 - AluSx SINE Alu -17 295 3 23 68 0 0 chr15 14852385 14852429 -70843325 + AT_rich Low_complexity Low_complexity 1 44 0 548 14 0 0 chr15 14852513 14852582 -70843172 + L1PA2 LINE L1 6083 6151 -4 5153 146 13 3 chr15 14853426 14854855 -70840899 - L1PA16 LINE L1 -9 6157 4718 776 155 0 0 chr15 14854960 14855089 -70840665 - L1M2 LINE L1 -541 5771 5643 280 263 177 5 chr15 14855138 14855347 -70840407 - LTR33 LTR ERVL -20 501 257 2499 41 0 0 chr15 14855995 14856286 -70839468 - AluY SINE Alu -20 291 1 373 325 186 5 chr15 14856344 14856538 -70839216 + MIR SINE MIR 34 262 0 234 0 0 0 chr15 14857099 14857125 -70838629 + (T)n Simple_repeat Simple_repeat 1 26 0 199 308 124 72 chr15 14858196 14858351 -70837403 + L2 LINE L2 1950 2096 -1218 1712 145 20 110 chr15 14858351 14858750 -70837004 - MLT1A1 LTR MaLR 0 365 3 199 308 124 72 chr15 14858750 14859133 -70836621 + L2 LINE L2 2096 2516 -798 23 68 0 0 chr15 14859815 14859859 -70835895 + AT_rich Low_complexity Low_complexity 1 44 0 201 339 73 26 chr15 14860391 14860583 -70835171 + L2 LINE L2 1993 2193 -1121 920 60 8 0 chr15 14860624 14860741 -70835013 - L1PA8 LINE L1 -15 6157 6040 232 128 0 0 chr15 14860741 14860780 -70834974 + L1P LINE L1 2716 2754 -3392 185 301 108 12 chr15 14860986 14861069 -70834685 + L2 LINE L2 2439 2529 -785 452 286 122 31 chr15 14861197 14861491 -70834263 + L2 LINE L2 2406 2726 -588 940 242 62 62 chr15 14861494 14862010 -70833744 - L1MCc LINE L1 -1792 5149 4634 6333 204 44 14 chr15 14862021 14865309 -70830445 - L1MCc LINE L1 -2946 3995 614 713 200 31 128 chr15 14865311 14865709 -70830045 - L1M4 LINE L1 -3195 2951 2601 1674 80 0 9 chr15 14865709 14865921 -70829833 - AluY SINE Alu -16 295 86 713 200 31 128 chr15 14865921 14865977 -70829777 - L1M4 LINE L1 -3545 2601 2541 855 251 74 67 chr15 14866069 14866516 -70829238 - L1MCc LINE L1 -5961 462 13 285 296 0 0 chr15 14866559 14866640 -70829114 - HAL1 LINE L1 -2195 312 232 22 0 0 0 chr15 14867006 14867028 -70828726 + AT_rich Low_complexity Low_complexity 1 22 0 1974 118 0 28 chr15 14867043 14867331 -70828423 - AluSx SINE Alu -30 282 3 864 208 17 17 chr15 14867799 14867972 -70827782 + MER5B DNA MER1_type 1 173 -5 22 35 0 0 chr15 14868298 14868327 -70827427 + AT_rich Low_complexity Low_complexity 1 29 0 2006 181 69 16 chr15 14868496 14868932 -70826822 + LOR1b LTR ERV1 3 461 0 2466 45 3 0 chr15 14870127 14870477 -70825277 - AluY SINE Alu 0 351 1 238 281 68 64 chr15 14871192 14871427 -70824327 + L1ME LINE L1 5542 5780 -341 312 205 26 13 chr15 14871427 14871505 -70824249 - MER116 DNA Mariner -1 79 1 238 281 68 64 chr15 14871505 14871550 -70824204 + L1ME LINE L1 5780 5823 -298 180 152 0 0 chr15 14871635 14871668 -70824086 + (CA)n Simple_repeat Simple_repeat 1 33 0 2147 113 7 16 chr15 14872482 14872815 -70822939 - AluSg SINE Alu 0 330 1 21 0 0 0 chr15 14872930 14872951 -70822803 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr15 14876322 14876348 -70819406 + AT_rich Low_complexity Low_complexity 1 26 0 189 74 0 0 chr15 14877298 14877325 -70818429 + (CCCA)n Simple_repeat Simple_repeat 2 28 0 30 83 0 0 chr15 14877333 14877405 -70818349 + AT_rich Low_complexity Low_complexity 1 72 0 8740 123 101 1 chr15 14877696 14879106 -70816648 - Tigger1 DNA MER2_type -1 2417 868 2245 134 20 3 chr15 14879111 14879461 -70816293 - L1PA15 LINE L1 -20 6145 5790 * 12145 213 26 17 chr15 14879452 14879530 -70816224 - L1PA15 LINE L1 -593 5572 5496 2297 74 0 0 chr15 14879530 14879841 -70815913 - AluY SINE Alu 0 311 1 12145 213 26 17 chr15 14879841 14880016 -70815738 - L1PA15 LINE L1 -669 5496 5324 2289 111 0 9 chr15 14880016 14880331 -70815423 - AluSp SINE Alu -1 312 1 12145 213 26 17 chr15 14880331 14883372 -70812382 - L1PA15 LINE L1 -841 5324 2244 249 83 0 0 chr15 14883902 14883938 -70811816 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 1858 126 47 4 chr15 14883959 14884236 -70811518 - AluSx SINE Alu -19 293 5 6006 92 9 26 chr15 14884292 14885840 -70809914 + L1PA10 LINE L1 4632 6150 -18 443 300 163 12 chr15 14885861 14886101 -70809653 - L2 LINE L2 -61 3252 2977 296 283 165 110 chr15 14887297 14887569 -70808185 - L2 LINE L2 0 3272 2986 518 230 79 0 chr15 14887829 14887955 -70807799 - MIR SINE MIR -56 206 71 379 226 0 48 chr15 14888032 14888116 -70807638 - L2 LINE L2 -4 3309 3230 326 266 64 0 chr15 14889275 14889369 -70806385 + MIR SINE MIR 65 164 -98 1828 129 94 15 chr15 14891259 14891600 -70804154 - THE1C LTR MaLR 0 375 8 402 239 106 21 chr15 14891608 14891750 -70804004 + MIR SINE MIR 32 185 -77 2264 84 0 47 chr15 14892620 14892940 -70802814 - AluSg SINE Alu -5 305 1 678 184 86 0 chr15 14893335 14893498 -70802256 - L1MA9 LINE L1 -38 6274 6098 306 111 0 0 chr15 14893615 14893660 -70802094 - MER2 DNA MER2_type -138 207 163 4330 234 36 35 chr15 14893776 14894801 -70800953 - L1PA13 LINE L1 -3817 2980 1958 1948 129 30 10 chr15 14894801 14895104 -70800650 - AluSc SINE Alu 0 309 1 4330 234 36 35 chr15 14895104 14896553 -70799201 - L1PA13 LINE L1 -4839 1958 5 4991 189 6 2 chr15 14896562 14897446 -70798308 - Tigger1 DNA MER2_type -1527 891 5 305 267 221 4 chr15 14897561 14897699 -70798055 + HAL1 LINE L1 1040 1147 -1360 847 105 23 8 chr15 14897699 14897832 -70797922 - L1MA4 LINE L1 -11 6289 6155 305 267 221 4 chr15 14897832 14897974 -70797780 + HAL1 LINE L1 1147 1381 -1126 3185 100 14 8 chr15 14898001 14898483 -70797271 + L1PA13 LINE L1 5678 6162 -1 883 275 158 7 chr15 14898849 14899253 -70796501 + HAL1 LINE L1 1406 1870 -637 525 223 59 25 chr15 14899256 14899458 -70796296 + HAL1 LINE L1 1956 2164 -343 537 284 145 56 chr15 14899895 14900198 -70795556 + MER102a DNA MER1_type 1 330 0 186 277 168 10 chr15 14900600 14900701 -70795053 + MIR3 SINE MIR 2 118 -90 7848 152 16 22 chr15 14900807 14902671 -70793083 + L1PB1 LINE L1 3663 5510 -641 1900 135 0 25 chr15 14902671 14902952 -70792802 - AluSx SINE Alu -36 276 3 7848 152 16 22 chr15 14902952 14903587 -70792167 + L1PB1 LINE L1 5510 6147 -4 258 241 48 36 chr15 14904190 14904273 -70791481 + MER94 DNA DNA 16 99 -35 321 164 49 0 chr15 14904289 14904350 -70791404 + MIR SINE MIR 197 260 -2 510 327 65 73 chr15 14906035 14906531 -70789223 - L2 LINE L2 -8 3305 2814 284 363 20 0 chr15 14906627 14906729 -70789025 - MIR SINE MIR -88 120 17 446 194 119 0 chr15 14907057 14907191 -70788563 + MER113 DNA MER1_type? 1 150 -371 227 374 136 20 chr15 14907430 14907628 -70788126 + L2 LINE L2 2553 2773 -541 198 0 0 0 chr15 14908741 14908763 -70786991 + (CA)n Simple_repeat Simple_repeat 1 22 0 1067 119 0 0 chr15 14908772 14908915 -70786839 - AluSg/x SINE Alu -19 291 149 262 318 159 8 chr15 14910504 14910630 -70785124 - MIR SINE MIR -70 192 48 335 284 69 15 chr15 14911604 14911808 -70783946 - L1ME LINE L1 -376 5745 5531 21 0 0 0 chr15 14911837 14911858 -70783896 + AT_rich Low_complexity Low_complexity 1 21 0 609 167 57 19 chr15 14912783 14912923 -70782831 - MLT1D LTR MaLR -313 154 20 2183 103 13 0 chr15 14913908 14914208 -70781546 + AluY SINE Alu 1 304 -7 259 347 0 0 chr15 14914213 14914288 -70781466 - MIR SINE MIR -157 105 31 26 0 0 0 chr15 14914783 14914809 -70780945 + AT_rich Low_complexity Low_complexity 1 26 0 347 214 24 12 chr15 14914995 14915079 -70780675 + AluJ/FLAM SINE Alu 18 102 -200 409 229 10 0 chr15 14915129 14915225 -70780529 - L1MD1 LINE L1 -410 5832 5736 990 167 52 0 chr15 14915356 14915530 -70780224 + AluJo SINE Alu 120 302 -10 490 217 9 0 chr15 14915930 14916036 -70779718 + L1ME1 LINE L1 5733 5839 -327 2511 152 7 7 chr15 14916371 14916819 -70778935 + L1MA5 LINE L1 5853 6300 0 261 213 49 0 chr15 14916980 14917041 -70778713 + L2 LINE L2 3242 3305 -8 746 181 0 0 chr15 14917483 14917610 -70778144 + FLAM_C SINE Alu 1 127 -16 962 198 210 18 chr15 14917718 14918051 -70777703 + L1MD2 LINE L1 1967 2363 -4033 1252 206 17 34 chr15 14918066 14918362 -70777392 + L1MD2 LINE L1 5621 5911 -517 872 261 92 0 chr15 14918351 14918612 -70777142 + L1ME LINE L1 5411 5695 -471 * 328 204 92 10 chr15 14918610 14918708 -70777046 + L1MA10 LINE L1 6225 6330 -4 * 524 253 76 34 chr15 14918750 14919078 -70776676 + L1MEc LINE L1 3039 3380 -2835 2706 206 89 59 chr15 14919087 14919631 -70776123 - MER63D DNA MER1_type -2 1059 533 180 0 0 0 chr15 14919631 14919651 -70776103 + (TC)n Simple_repeat Simple_repeat 2 21 0 2706 206 89 59 chr15 14919651 14919938 -70775816 - MER63D DNA MER1_type -528 533 189 2334 83 0 34 chr15 14919938 14920262 -70775492 + AluSq SINE Alu 1 313 0 2706 206 89 59 chr15 14920262 14920449 -70775305 - MER63D DNA MER1_type -872 189 9 266 290 51 14 chr15 14920503 14920641 -70775113 + L1MEc LINE L1 3439 3581 -2634 218 60 60 20 chr15 14920714 14920764 -70774990 + (TA)n Simple_repeat Simple_repeat 1 52 0 942 274 102 10 chr15 14920777 14921267 -70774487 + L1MEc LINE L1 3968 4502 -1713 330 269 15 90 chr15 14921351 14921525 -70774229 - MLT1H LTR MaLR -344 205 3 887 272 30 59 chr15 14921554 14921995 -70773759 - L1MCc LINE L1 -5978 445 18 213 39 0 0 chr15 14923496 14923522 -70772232 + (TG)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr15 14924000 14924021 -70771733 + AT_rich Low_complexity Low_complexity 1 21 0 226 204 41 0 chr15 14925098 14925147 -70770607 - L2 LINE L2 0 3313 3263 264 336 9 19 chr15 14925393 14925500 -70770254 - L2 LINE L2 -1 3312 3207 2219 255 75 20 chr15 14925549 14926983 -70768771 - L1ME2 LINE L1 -10 6223 4684 2561 233 40 22 chr15 14927005 14927222 -70768532 - L1ME2 LINE L1 -1695 4520 4308 189 0 0 0 chr15 14927222 14927243 -70768511 + (TG)n Simple_repeat Simple_repeat 2 22 0 2561 233 40 22 chr15 14927243 14927441 -70768313 - L1ME2 LINE L1 -1907 4308 4115 1523 146 34 19 chr15 14927441 14927609 -70768145 - L1MC2 LINE L1 -1 6343 6166 1977 185 3 8 chr15 14927609 14927976 -70767778 - MLT1A1 LTR MaLR 0 365 1 1523 146 34 19 chr15 14927976 14928128 -70767626 - L1MC2 LINE L1 -178 6166 6018 2561 233 40 22 chr15 14928128 14928571 -70767183 - L1ME2 LINE L1 -2100 4115 3656 1471 122 0 0 chr15 14928723 14928928 -70766826 - AluSg/x SINE Alu -4 308 104 1811 64 13 0 chr15 14928930 14929166 -70766588 - THE1B-int LTR MaLR -1341 239 1 2155 118 51 25 chr15 14929166 14929521 -70766233 - THE1B LTR MaLR 0 364 1 314 270 65 51 chr15 14929547 14929762 -70765992 - HAL1 LINE L1 -861 1646 1429 385 272 91 64 chr15 14929766 14930284 -70765470 - L1ME2 LINE L1 -5083 1313 782 2669 171 24 40 chr15 14930318 14930868 -70764886 - L1PB4 LINE L1 -3 6153 5613 1890 163 79 11 chr15 14930868 14931572 -70764182 + L1PB4 LINE L1 4857 5612 -544 357 335 45 38 chr15 14931970 14932260 -70763494 - L1ME2 LINE L1 -6019 377 86 317 299 47 39 chr15 14932365 14932492 -70763262 - L1MC4a LINE L1 -1937 5871 5744 305 377 62 0 chr15 14932505 14932651 -70763103 - L1MC4a LINE L1 -2144 5664 5510 2407 119 19 24 chr15 14933826 14934054 -70761700 + THE1C LTR MaLR 1 228 -147 2383 115 19 22 chr15 14934054 14934419 -70761335 - THE1B LTR MaLR 0 364 1 2407 119 19 24 chr15 14934419 14934567 -70761187 + THE1C LTR MaLR 228 375 0 201 374 37 0 chr15 14935291 14935398 -70760356 + L2 LINE L2 3147 3257 -15 328 370 70 29 chr15 14935429 14935813 -70759941 - L2 LINE L2 -671 2643 2244 405 181 69 164 chr15 14936710 14936942 -70758812 + MER112 DNA MER1_type 3 212 -48 234 0 0 0 chr15 14936997 14937023 -70758731 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1808 145 0 10 chr15 14937033 14937343 -70758411 - AluYa5 SINE Alu 0 311 5 21 0 0 0 chr15 14937404 14937425 -70758329 + AT_rich Low_complexity Low_complexity 1 21 0 10285 238 35 19 chr15 14937715 14941672 -70754082 - L1PBb LINE L1 -1355 4848 781 349 276 0 8 chr15 14941686 14941809 -70753945 - L1PBb LINE L1 -3609 2594 2473 556 289 61 0 chr15 14942199 14942379 -70753375 - L1PBb LINE L1 -5324 880 690 * 3352 184 38 8 chr15 14942359 14942991 -70752763 - L1PA15-16 LINE L1 -5280 1569 919 475 258 18 18 chr15 14942986 14943149 -70752605 + L1MB7 LINE L1 5979 6141 -43 * 219 114 0 0 chr15 14943318 14943353 -70752401 + (TA)n Simple_repeat Simple_repeat 2 36 0 2331 92 0 13 chr15 14944063 14944369 -70751385 + AluY SINE Alu 1 302 -9 2105 123 7 3 chr15 14944784 14945092 -70750662 - AluSq SINE Alu -4 309 1 996 208 35 0 chr15 14945596 14945798 -70749956 + MER3 DNA MER1_type 1 209 0 1294 153 40 22 chr15 14951091 14951314 -70744440 + Charlie3 DNA MER1_type 6 232 -2478 * 1735 102 35 12 chr15 14951309 14951564 -70744190 + Charlie3 DNA MER1_type 2442 2702 -8 235 310 111 63 chr15 14952224 14952404 -70743350 + MLT1K LTR MaLR 305 504 -84 1427 219 123 10 chr15 14952404 14952819 -70742935 - LTR40b LTR ERVL 0 462 1 235 310 111 63 chr15 14952819 14952909 -70742845 + MLT1K LTR MaLR 504 588 0 211 347 14 0 chr15 14953632 14953704 -70742050 + L2 LINE L2 3200 3272 0 1939 214 112 0 chr15 14954363 14954835 -70740919 + L1MC4 LINE L1 6479 7003 -1039 540 204 36 8 chr15 14954859 14954995 -70740759 + L1MC4 LINE L1 7880 7995 0 231 241 98 30 chr15 14955009 14955142 -70740612 + L1MC5 LINE L1 7800 7941 -20 228 163 0 0 chr15 14955823 14955866 -70739888 + (TG)n Simple_repeat Simple_repeat 2 44 0 338 235 12 12 chr15 14956772 14956853 -70738901 - MIR SINE MIR -1 261 181 22 0 0 0 chr15 14958113 14958135 -70737619 + AT_rich Low_complexity Low_complexity 1 22 0 9379 29 3 0 chr15 14958135 14960028 -70735726 - L1PA3 LINE L1 0 6155 4265 618 198 40 16 chr15 14961172 14961298 -70734456 + FLAM_A SINE Alu 4 132 -1 331 227 100 53 chr15 14963190 14963340 -70732414 + MIR SINE MIR 100 256 -6 350 241 13 0 chr15 14963388 14963467 -70732287 + Tigger5 DNA MER2_type 1 80 -2243 281 186 51 17 chr15 14963468 14963527 -70732227 - Tigger5 DNA MER2_type -6 2317 2257 * 318 152 0 0 chr15 14963526 14963572 -70732182 + Tigger5 DNA MER2_type 2278 2323 0 2228 121 0 0 chr15 14965354 14965661 -70730093 + AluSp SINE Alu 1 307 -6 465 322 17 34 chr15 14965729 14965906 -70729848 + MER5B DNA MER1_type 2 175 -3 660 191 22 0 chr15 14967001 14967137 -70728617 - MER33 DNA MER1_type -185 139 1 348 335 124 15 chr15 14967271 14967674 -70728080 + L1M4 LINE L1 4309 4755 -1391 5856 148 12 4 chr15 14967698 14968648 -70727106 + L1PB1 LINE L1 4824 5767 -384 318 50 0 0 chr15 14968648 14968688 -70727066 + (TA)n Simple_repeat Simple_repeat 1 40 0 5856 148 12 4 chr15 14968688 14969076 -70726678 + L1PB1 LINE L1 5767 6151 0 1791 175 0 4 chr15 14969481 14969761 -70725993 + AluJb SINE Alu 5 283 -29 203 61 30 0 chr15 14969766 14969799 -70725955 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr15 14970327 14970348 -70725406 + AT_rich Low_complexity Low_complexity 1 21 0 926 19 0 0 chr15 14970416 14970523 -70725231 + L1PA3 LINE L1 6047 6153 -2 395 335 71 48 chr15 14970842 14971236 -70724518 + LTR16C LTR ERVL 87 489 -2 5362 244 82 26 chr15 14971236 14974297 -70721457 + L1M3e LINE L1 831 4027 -2355 209 254 55 0 chr15 14974299 14974354 -70721400 + MER5B DNA MER1_type 121 178 0 340 363 15 15 chr15 14975836 14975971 -70719783 + MIR SINE MIR 16 150 -58 600 297 59 7 chr15 14976101 14976321 -70719433 + MIR SINE MIR 15 236 -26 182 284 104 0 chr15 14977595 14977662 -70718092 + MIR SINE MIR 186 259 -3 360 253 102 11 chr15 14978008 14978194 -70717560 - L1ME2 LINE L1 -297 5867 5665 258 271 24 100 chr15 14978244 14978454 -70717300 + MER112 DNA MER1_type 67 260 0 1853 230 70 26 chr15 14978559 14979015 -70716739 - MER110 LTR ERV1 -15 476 1 372 257 126 46 chr15 14979023 14979284 -70716470 - L1ME2 LINE L1 -577 5585 5304 318 245 202 29 chr15 14979302 14979510 -70716244 - L1ME2 LINE L1 -820 5326 5083 6021 92 14 0 chr15 14979585 14980560 -70715194 + L1PB2 LINE L1 5163 6149 -2 454 249 35 29 chr15 14980878 14981051 -70714703 - MLT1H LTR MaLR -375 174 1 243 0 0 0 chr15 14981351 14981378 -70714376 + (T)n Simple_repeat Simple_repeat 1 27 0 2306 191 72 52 chr15 14982436 14983085 -70712669 + MER21B LTR ERV1 132 793 -70 400 286 65 77 chr15 14983123 14983459 -70712295 + MLT1J2 LTR MaLR 36 367 -83 1919 198 115 9 chr15 14984186 14984646 -70711108 + LTR22 LTR ERVK 1 509 0 361 317 18 45 chr15 14984673 14985187 -70710567 - L1MEd LINE L1 -870 1620 1021 184 291 0 0 chr15 14986998 14987053 -70708701 + L2 LINE L2 2592 2646 -668 25 65 0 0 chr15 14987071 14987117 -70708637 + AT_rich Low_complexity Low_complexity 1 46 0 980 209 5 14 chr15 14987456 14987667 -70708087 + MER3 DNA MER1_type 1 209 0 248 432 54 7 chr15 14987932 14988080 -70707674 + L2 LINE L2 3116 3270 -2 198 71 0 0 chr15 14988681 14988709 -70707045 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 222 91 0 0 chr15 14988771 14988804 -70706950 + (CATA)n Simple_repeat Simple_repeat 4 36 0 25 31 0 0 chr15 14989313 14989345 -70706409 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr15 14989802 14989825 -70705929 + AT_rich Low_complexity Low_complexity 1 23 0 1075 244 78 55 chr15 14991922 14992373 -70703381 + MLT1C LTR MaLR 7 467 0 388 327 129 56 chr15 14992390 14993470 -70702284 + L2 LINE L2 2006 3183 -89 2007 130 20 0 chr15 14994958 14995259 -70700495 + AluSc SINE Alu 1 307 -2 2254 99 0 0 chr15 14997171 14997454 -70698300 + AluSg SINE Alu 1 283 -27 545 64 13 0 chr15 14997454 14997532 -70698222 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 252 279 48 67 chr15 14998684 14998788 -70696966 + L3 LINE CR1 1349 1450 -127 1029 163 117 0 chr15 14999292 14999488 -70696266 - MER20 DNA MER1_type 0 219 1 698 209 46 67 chr15 14999803 15000041 -70695713 - MLT2C1 LTR ERVL -115 282 49 1813 179 31 17 chr15 15000041 15000399 -70695355 - MLT1A1 LTR MaLR 0 365 3 698 209 46 67 chr15 15000399 15000443 -70695311 - MLT2C1 LTR ERVL -348 49 6 307 150 8 5 chr15 15000514 15000576 -70695178 + MLT1A1 LTR MaLR 255 390 -61 3865 186 30 8 chr15 15000680 15001507 -70694247 + L1MB7 LINE L1 5330 6174 -10 2260 108 0 0 chr15 15002337 15002633 -70693121 - AluSg SINE Alu -14 296 1 522 0 0 0 chr15 15003385 15003443 -70692311 + (TA)n Simple_repeat Simple_repeat 2 59 0 2120 109 4 0 chr15 15003465 15003740 -70692014 - AluSq SINE Alu -37 276 1 247 161 16 16 chr15 15003885 15003947 -70691807 + CT-rich Low_complexity Low_complexity 1 62 0 187 354 127 0 chr15 15005368 15005447 -70690307 - L2 LINE L2 -2 3270 3182 192 152 0 0 chr15 15006031 15006064 -70689690 + (CATA)n Simple_repeat Simple_repeat 4 36 0 654 288 113 0 chr15 15009706 15009928 -70685826 + MIR SINE MIR 6 252 -10 232 227 0 30 chr15 15010453 15010519 -70685235 + L2 LINE L2 3165 3228 -85 23 54 0 0 chr15 15010541 15010578 -70685176 + AT_rich Low_complexity Low_complexity 1 37 0 427 312 85 0 chr15 15010653 15010842 -70684912 + MER63A DNA MER1_type 5 209 -1 530 211 0 55 chr15 15010979 15011107 -70684647 + MER68 LTR ERV1 1 121 -441 773 308 23 95 chr15 15012490 15012922 -70682832 - L2 LINE L2 -26 3246 2846 462 309 20 0 chr15 15014129 15014281 -70681473 - LTR67 LTR ERVL -9 548 394 255 345 23 40 chr15 15014445 15014619 -70681135 - LTR67 LTR ERVL -367 190 20 481 274 54 20 chr15 15015043 15015247 -70680507 - L1MC4 LINE L1 -480 7562 7352 4385 224 54 59 chr15 15015277 15017393 -70678361 + L1PA10 LINE L1 11 2163 -4298 * 4782 26 5 0 chr15 15017389 15017972 -70677782 - L1P LINE L1 -1852 4294 3709 3084 24 0 19 chr15 15017972 15018405 -70677349 + L1PA3 LINE L1 5789 6214 0 8292 144 32 8 chr15 15018421 15021110 -70674644 + L1PA10 LINE L1 2158 5013 -1470 2559 10 0 58 chr15 15021110 15021423 -70674331 - AluYa5 SINE Alu -16 295 1 8292 144 32 8 chr15 15021423 15022931 -70672823 + L1PA10 LINE L1 5013 6483 0 1428 240 57 63 chr15 15022940 15023752 -70672002 - L1MC4 LINE L1 -567 7321 6414 58 70 0 0 chr15 15023923 15024037 -70671717 + AT_rich Low_complexity Low_complexity 1 114 0 410 271 134 39 chr15 15024101 15024756 -70670998 - L1M4 LINE L1 -1726 4420 3742 22 35 0 0 chr15 15024835 15024864 -70670890 + AT_rich Low_complexity Low_complexity 1 29 0 455 336 16 20 chr15 15025464 15025714 -70670040 - L1MEc LINE L1 -4636 1971 1723 253 269 43 0 chr15 15025790 15025883 -70669871 - L1MEc LINE L1 -5031 1395 1299 4793 65 0 0 chr15 15026780 15027367 -70668387 + LTR14C LTR ERVK 1 587 0 413 299 58 36 chr15 15027594 15027818 -70667936 - MLT1J LTR MaLR -44 467 239 1271 278 19 6 chr15 15028033 15028501 -70667253 + L1M4 LINE L1 3869 4342 -1804 3840 107 5 3 chr15 15028546 15029114 -70666640 + HERVK22 LTR ERVK 186 754 -6083 11848 96 3 13 chr15 15029402 15030962 -70664792 + HERVK22 LTR ERVK 2327 3870 -2967 2161 111 7 0 chr15 15030962 15031268 -70664486 - AluSg SINE Alu -2 308 1 11848 96 3 13 chr15 15031268 15031557 -70664197 + HERVK22 LTR ERVK 3870 4160 -2677 524 70 0 0 chr15 15031557 15031628 -70664126 + U3 snRNA snRNA 1 71 -146 2786 130 23 2 chr15 15031628 15032420 -70663334 + HERVK22 LTR ERVK 3172 6837 0 2052 184 87 17 chr15 15032420 15032892 -70662862 + LTR22 LTR ERVK 1 505 -4 1171 308 88 28 chr15 15032920 15034027 -70661727 - L1MEc LINE L1 -5131 1265 92 197 265 249 28 chr15 15034968 15035149 -70660605 + L2 LINE L2 3035 3255 -58 232 246 0 18 chr15 15035990 15036047 -70659707 + GA-rich Low_complexity Low_complexity 1 56 0 411 272 154 0 chr15 15037559 15037721 -70658033 - MIR SINE MIR -12 250 64 312 140 0 0 chr15 15038354 15038404 -70657350 - MER94 DNA DNA -83 51 2 419 266 72 43 chr15 15038594 15038733 -70657021 + MER5B DNA MER1_type 11 142 -36 280 98 0 0 chr15 15041413 15041454 -70654300 - L1P LINE L1 -1224 4922 4882 1764 212 36 0 chr15 15041820 15041935 -70653819 + L1P LINE L1 4664 4773 -1373 203 61 30 0 chr15 15041935 15041968 -70653786 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 1764 212 36 0 chr15 15041968 15042267 -70653487 + L1P LINE L1 4773 5093 -1053 339 25 0 0 chr15 15044737 15044777 -70650977 + (TG)n Simple_repeat Simple_repeat 1 40 0 331 283 69 48 chr15 15044916 15045061 -70650693 - MER5A DNA MER1_type -24 165 18 22 0 0 0 chr15 15046248 15046270 -70649484 + AT_rich Low_complexity Low_complexity 1 22 0 2154 201 33 10 chr15 15046738 15047225 -70648529 - MER34 LTR ERV1 0 542 45 249 241 0 0 chr15 15047243 15047301 -70648453 - MER34C LTR ERV1 -493 92 35 2015 153 0 0 chr15 15048422 15048717 -70647037 + AluSx SINE Alu 1 295 -17 8027 181 40 40 chr15 15048996 15050751 -70645003 - MER52A LTR ERV1 0 1755 1 542 266 108 18 chr15 15050932 15051154 -70644600 - MIR SINE MIR -17 245 4 260 258 112 11 chr15 15052111 15052200 -70643554 - MER5B DNA MER1_type -80 98 1 208 148 37 19 chr15 15052276 15052330 -70643424 + (TA)n Simple_repeat Simple_repeat 1 55 0 196 290 130 20 chr15 15053840 15053940 -70641814 + MIR3 SINE MIR 59 169 -39 519 297 32 0 chr15 15054461 15054616 -70641138 + MIR SINE MIR 77 236 -26 300 261 11 33 chr15 15056514 15056606 -70639148 + L1MC4 LINE L1 6614 6703 -1339 311 255 82 10 chr15 15056625 15056723 -70639031 + L1MC4 LINE L1 6615 6719 -1323 315 243 35 0 chr15 15056746 15056919 -70638835 + (TA)n Simple_repeat Simple_repeat 2 180 0 303 344 137 4 chr15 15056924 15057180 -70638574 + L2 LINE L2 2467 2756 -558 200 307 59 50 chr15 15057187 15057288 -70638466 - MER5B DNA MER1_type -76 102 1 445 204 71 66 chr15 15057787 15058013 -70637741 - L1MC5 LINE L1 -37 7924 7698 716 238 174 14 chr15 15058041 15058331 -70637423 - MLT1D LTR MaLR -2 503 167 1619 138 164 52 chr15 15058331 15058566 -70637188 + MSTA LTR MaLR 1 208 -220 2302 132 22 11 chr15 15058566 15058937 -70636817 + THE1C LTR MaLR 1 375 0 1619 138 164 52 chr15 15058937 15059086 -70636668 + MSTA LTR MaLR 208 428 0 626 203 98 49 chr15 15059086 15059249 -70636505 - MLT1D LTR MaLR -334 171 1 295 157 0 0 chr15 15059260 15059311 -70636443 - L1MC5 LINE L1 -302 7659 7609 368 256 77 70 chr15 15060118 15060228 -70635526 + MIR3 SINE MIR 37 150 -58 869 445 133 0 chr15 15060228 15060491 -70635263 + AluSx SINE Alu 1 298 -4 368 256 77 70 chr15 15060491 15060536 -70635218 + MIR3 SINE MIR 150 193 -15 5612 121 28 3 chr15 15060629 15061871 -70633883 - L1PA14 LINE L1 -2 6159 4888 257 237 31 62 chr15 15063738 15063835 -70631919 + L3 LINE CR1 1138 1231 -346 312 91 0 0 chr15 15063846 15063890 -70631864 + (TG)n Simple_repeat Simple_repeat 1 44 0 511 335 43 35 chr15 15063951 15064181 -70631573 + L3 LINE CR1 1244 1475 -102 200 321 113 54 chr15 15065229 15065450 -70630304 + L3 LINE CR1 1251 1484 -93 615 342 98 56 chr15 15066517 15066996 -70628758 + L3 LINE CR1 1071 1569 -8 1350 173 60 49 chr15 15067209 15067247 -70628507 - THE1C LTR MaLR -2 373 337 1992 142 0 10 chr15 15067247 15067543 -70628211 + AluSg SINE Alu 1 293 -17 1350 173 60 49 chr15 15067543 15067869 -70627885 - THE1C LTR MaLR -38 337 5 1784 152 55 36 chr15 15068050 15068413 -70627341 + THE1C LTR MaLR 6 375 0 1743 309 124 20 chr15 15068416 15069384 -70626370 - L2 LINE L2 -258 3055 1990 6115 213 12 13 chr15 15069467 15070767 -70624987 + L1PA15-16 LINE L1 1 1257 -5592 12914 193 21 13 chr15 15070767 15076853 -70618901 + L1PA16 LINE L1 733 6867 -2 216 294 92 18 chr15 15078011 15078120 -70617634 + MIR SINE MIR 20 136 -72 251 314 49 29 chr15 15078569 15078671 -70617083 - L2 LINE L2 -1 3312 3209 2458 61 6 16 chr15 15078810 15079122 -70616632 + AluY SINE Alu 1 309 -2 499 231 308 0 chr15 15079159 15079315 -70616439 - MIR SINE MIR 0 262 59 1756 49 0 0 chr15 15081356 15081559 -70614195 - L1PA4 LINE L1 -3 6152 5950 31 26 0 0 chr15 15082043 15082081 -70613673 + AT_rich Low_complexity Low_complexity 1 38 0 445 265 240 39 chr15 15082137 15082229 -70613525 - MIR SINE MIR -1 261 189 387 0 0 0 chr15 15082229 15082272 -70613482 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2306 71 4 0 chr15 15082273 15082553 -70613201 - AluSq SINE Alu -32 281 1 445 265 240 39 chr15 15082553 15082662 -70613092 - MIR SINE MIR -72 190 17 253 234 53 32 chr15 15083439 15083533 -70612221 + L1ME3A LINE L1 6070 6165 -5 365 232 56 24 chr15 15084482 15084607 -70611147 + L2 LINE L2 2375 2503 -811 386 318 9 9 chr15 15084763 15084873 -70610881 + MERVL LTR ERVL 4101 4210 -1275 1426 137 34 9 chr15 15084877 15085110 -70610644 - AluSg/x SINE Alu 0 312 74 879 325 82 49 chr15 15085114 15085955 -70609799 + MERVL LTR ERVL 4246 5114 -650 282 307 87 14 chr15 15086040 15086178 -70609576 + MERVL LTR ERVL 5177 5323 -331 511 265 56 55 chr15 15086280 15086655 -70609099 + LTR16A LTR ERVL 10 441 -9 948 287 153 26 chr15 15086663 15087237 -70608517 + L2 LINE L2 2673 3313 0 214 191 0 0 chr15 15087558 15087600 -70608154 + T-rich Low_complexity Low_complexity 1 42 0 186 265 29 29 chr15 15087818 15087886 -70607868 - MIR SINE MIR -87 121 54 536 296 28 32 chr15 15088321 15088537 -70607217 - MIR SINE MIR -1 261 47 216 149 0 0 chr15 15088616 15088663 -70607091 + (TC)n Simple_repeat Simple_repeat 1 47 0 359 312 88 0 chr15 15089228 15089373 -70606381 - MIR SINE MIR -70 192 37 2293 95 7 0 chr15 15091354 15091659 -70604095 - AluSp SINE Alu -6 307 1 641 221 0 15 chr15 15091725 15091861 -70603893 + MLT2F LTR ERVL 1 134 -529 543 176 57 47 chr15 15091869 15092053 -70603701 + MLT1E1 LTR MaLR 52 291 -363 281 145 26 145 chr15 15092167 15092243 -70603511 + MLT2C2 LTR ERVL 343 409 -55 219 244 33 11 chr15 15092244 15092334 -70603420 + (TA)n Simple_repeat Simple_repeat 2 93 0 647 317 35 0 chr15 15092844 15093071 -70602683 - MIR SINE MIR 0 262 28 1711 176 3 17 chr15 15094083 15094373 -70601381 - AluJo SINE Alu -26 286 1 904 218 16 46 chr15 15094601 15094862 -70600892 + L1MD2 LINE L1 6032 6285 -74 4209 98 5 5 chr15 15094965 15095544 -70600210 + MER11C LTR ERVK 479 1057 -14 4815 142 17 12 chr15 15095583 15096338 -70599416 + MSTA-int LTR MaLR 893 1651 0 2687 129 51 7 chr15 15096338 15096748 -70599006 + MSTA LTR MaLR 1 428 0 500 233 68 34 chr15 15096748 15096954 -70598800 - L1MEd LINE L1 -4934 1185 973 1893 160 0 7 chr15 15097246 15097534 -70598220 - AluJb SINE Alu -26 286 1 472 246 63 0 chr15 15101086 15101212 -70594542 + MER94 DNA DNA 1 134 0 196 204 20 41 chr15 15103414 15103428 -70592326 + L2 LINE L2 3207 3254 -18 198 114 29 0 chr15 15103428 15103463 -70592291 + MIR SINE MIR 215 250 -12 2054 119 3 14 chr15 15103538 15103832 -70591922 - AluSg SINE Alu -19 291 1 186 103 0 0 chr15 15104116 15104145 -70591609 + (CA)n Simple_repeat Simple_repeat 2 30 0 948 180 57 21 chr15 15104425 15104619 -70591135 - MER106A DNA MER1_type -2 234 34 3207 189 41 21 chr15 15104621 15105300 -70590454 - L1MC4 LINE L1 -144 7898 7206 337 235 160 7 chr15 15105292 15105418 -70590336 - L1MC4a LINE L1 -720 7147 7005 * 232 226 16 16 chr15 15105482 15105544 -70590210 + (CATATA)n Simple_repeat Simple_repeat 6 67 0 357 43 0 0 chr15 15105553 15105600 -70590154 + (CA)n Simple_repeat Simple_repeat 2 48 0 411 283 102 48 chr15 15105990 15106302 -70589452 + L1MEd LINE L1 664 1019 -5100 711 242 75 0 chr15 15106302 15106463 -70589291 - MER96 DNA MER1_type -2 173 1 411 283 102 48 chr15 15106463 15106691 -70589063 + L1MEd LINE L1 1019 1233 -4886 417 272 68 16 chr15 15108444 15108601 -70587153 - MIR SINE MIR -67 141 21 282 330 55 45 chr15 15109875 15109905 -70585849 - MIR SINE MIR -65 143 115 2456 158 64 10 chr15 15109905 15110311 -70585443 - MSTA LTR MaLR 0 428 1 282 330 55 45 chr15 15110311 15110414 -70585340 - MIR SINE MIR -93 115 21 277 260 0 27 chr15 15110851 15110924 -70584830 + HAL1 LINE L1 2074 2144 -363 228 360 23 0 chr15 15111401 15111487 -70584267 + MIR3 SINE MIR 95 182 -26 2132 108 3 3 chr15 15112575 15112862 -70582892 - AluSx SINE Alu -13 299 13 464 304 34 125 chr15 15112937 15113385 -70582369 + L2 LINE L2 2866 3272 0 555 126 58 10 chr15 15113500 15113603 -70582151 - L1MB4 LINE L1 -2 6178 6071 1714 179 14 14 chr15 15113801 15114098 -70581656 + AluSx SINE Alu 1 297 -15 187 430 32 0 chr15 15115176 15115332 -70580422 - L2 LINE L2 -1 3271 3111 1697 194 56 28 chr15 15115725 15116080 -70579674 + MLT1A1 LTR MaLR 1 365 0 400 306 79 108 chr15 15117585 15118065 -70577689 - L1MC4a LINE L1 -1836 5972 5507 1145 210 107 31 chr15 15118204 15118454 -70577300 + MER2 DNA MER2_type 1 282 -62 1923 153 3 0 chr15 15118454 15118749 -70577005 - AluSq SINE Alu -17 296 1 1145 210 107 31 chr15 15118749 15118817 -70576937 + MER2 DNA MER2_type 282 343 -1 2106 128 3 0 chr15 15119278 15119576 -70576178 - AluSx SINE Alu -13 299 1 647 264 83 46 chr15 15120904 15121120 -70574634 - MER58A DNA MER1_type 0 224 1 185 259 19 37 chr15 15121158 15121212 -70574542 - L2 LINE L2 0 3272 3220 1523 282 113 16 chr15 15121926 15122738 -70573016 + L1M4 LINE L1 3652 4542 -1604 268 373 10 10 chr15 15123076 15123178 -70572576 - MER5A DNA MER1_type -3 186 85 221 250 58 0 chr15 15123775 15123827 -70571927 + L2 LINE L2 3235 3289 -24 31 0 0 0 chr15 15124920 15124951 -70570803 + AT_rich Low_complexity Low_complexity 1 31 0 397 301 42 14 chr15 15124951 15125094 -70570660 + MIR SINE MIR 97 243 -19 186 43 0 0 chr15 15125251 15125274 -70570480 + (TG)n Simple_repeat Simple_repeat 2 24 0 360 271 131 32 chr15 15125391 15125612 -70570142 + MIR SINE MIR 18 260 -2 357 325 112 41 chr15 15125804 15126099 -70569655 + L2 LINE L2 2641 2956 -358 188 333 0 14 chr15 15126322 15126391 -70569363 + L2 LINE L2 3139 3206 -66 283 238 16 16 chr15 15128450 15128513 -70567241 - MER81 DNA DNA -12 102 40 182 240 147 13 chr15 15129370 15129445 -70566309 - MIR SINE MIR -79 129 45 2058 124 3 10 chr15 15129695 15129994 -70565760 + AluSx SINE Alu 1 297 -15 2238 102 14 3 chr15 15131031 15131325 -70564429 + AluSq SINE Alu 1 297 -16 672 163 0 0 chr15 15131884 15132037 -70563717 + (CA)n Simple_repeat Simple_repeat 2 154 0 319 308 206 35 chr15 15133394 15133709 -70562045 + L2 LINE L2 2945 3313 0 187 219 73 0 chr15 15134788 15134829 -70560925 - L2 LINE L2 -20 3252 3209 453 355 30 4 chr15 15135016 15135250 -70560504 - MER102b DNA MER1_type 0 341 102 398 261 0 27 chr15 15135705 15135816 -70559938 + MLT1J1 LTR MaLR 3 110 -336 917 206 0 0 chr15 15135935 15136100 -70559654 + AluJb SINE Alu 130 294 -18 647 146 56 49 chr15 15136100 15136244 -70559510 + MSTB1 LTR MaLR 288 432 0 324 316 8 53 chr15 15136269 15136402 -70559352 + L2 LINE L2 3187 3313 0 319 328 70 8 chr15 15136479 15136607 -70559147 - MIR3 SINE MIR -71 137 2 24 0 0 0 chr15 15140040 15140064 -70555690 + AT_rich Low_complexity Low_complexity 1 24 0 2018 105 0 41 chr15 15140327 15140648 -70555106 + AluSq SINE Alu 1 309 0 604 304 35 22 chr15 15141761 15141991 -70553763 - MIR SINE MIR 0 262 30 24 53 0 0 chr15 15142287 15142325 -70553429 + AT_rich Low_complexity Low_complexity 1 38 0 60 37 0 0 chr15 15142418 15142499 -70553255 + AT_rich Low_complexity Low_complexity 1 81 0 46 19 0 0 chr15 15143029 15143082 -70552672 + AT_rich Low_complexity Low_complexity 1 53 0 2486 45 0 38 chr15 15143928 15144242 -70551512 + AluY SINE Alu 1 302 -9 187 356 106 47 chr15 15144855 15145091 -70550663 - L2 LINE L2 -341 2973 2724 1521 183 60 71 chr15 15145141 15145578 -70550176 - MSTB1 LTR MaLR 0 432 1 1766 191 20 0 chr15 15145692 15145996 -70549758 - AluJb SINE Alu -2 310 1 227 323 21 85 chr15 15146327 15146494 -70549260 + MIR3 SINE MIR 16 176 -43 216 213 43 0 chr15 15147765 15147812 -70547942 + G-rich Low_complexity Low_complexity 2 50 0 2003 159 0 0 chr15 15147928 15148224 -70547530 - AluSx SINE Alu -16 296 1 287 365 19 39 chr15 15149983 15150139 -70545615 - MER5A DNA MER1_type -36 153 1 433 240 30 0 chr15 15151059 15151159 -70544595 - MER58 DNA MER1_type -109 106 4 361 330 17 0 chr15 15152105 15152223 -70543531 - MER91A DNA MER1_type -42 154 35 22 0 0 0 chr15 15152716 15152738 -70543016 + AT_rich Low_complexity Low_complexity 1 22 0 4955 52 27 2 chr15 15152738 15153368 -70542386 - L1PA7 LINE L1 -6 6148 5503 330 24 0 0 chr15 15153368 15153409 -70542345 + U2 snRNA snRNA 18 58 -130 22 0 0 0 chr15 15153613 15153635 -70542119 + AT_rich Low_complexity Low_complexity 1 22 0 2153 113 3 10 chr15 15154430 15154732 -70541022 + AluSg SINE Alu 1 300 -10 706 293 62 18 chr15 15155117 15155342 -70540412 + MIR SINE MIR 22 256 -6 763 260 39 26 chr15 15156044 15156275 -70539479 - L2 LINE L2 -1175 2139 1906 215 353 39 29 chr15 15156362 15156464 -70539290 - MIR SINE MIR -122 140 38 9719 150 36 4 chr15 15157207 15159892 -70535862 + L1MA8 LINE L1 3519 6287 -4 214 297 20 40 chr15 15160960 15161061 -70534693 + MIR SINE MIR 67 165 -97 212 319 11 22 chr15 15161818 15161909 -70533845 + L2 LINE L2 2709 2798 -516 640 311 145 3 chr15 15161964 15162315 -70533439 + L2 LINE L2 2912 3312 -1 373 217 22 22 chr15 15165327 15165419 -70530335 - MER103 DNA DNA -43 123 32 524 341 59 0 chr15 15169359 15169529 -70526225 - MIR SINE MIR -6 256 77 1790 216 37 28 chr15 15169529 15169992 -70525762 + MLT1C LTR MaLR 1 467 0 2318 96 0 3 chr15 15170134 15170437 -70525317 - AluSq SINE Alu -11 302 1 9342 166 37 11 chr15 15171157 15172073 -70523681 + L1PA13 LINE L1 3526 4417 -1746 1830 133 0 0 chr15 15172073 15172328 -70523426 + AluSx SINE Alu 41 295 -17 9342 166 37 11 chr15 15172328 15174011 -70521743 + L1PA13 LINE L1 4417 6149 -14 369 282 48 0 chr15 15174323 15174426 -70521328 - MIR SINE MIR -76 186 79 24 53 0 0 chr15 15175081 15175119 -70520635 + AT_rich Low_complexity Low_complexity 1 38 0 273 75 0 0 chr15 15175268 15175308 -70520446 + (TG)n Simple_repeat Simple_repeat 1 40 0 305 313 206 28 chr15 15175308 15175707 -70520047 - L1ME4a LINE L1 -198 5923 5454 505 291 97 67 chr15 15175958 15176619 -70519135 - L1ME4a LINE L1 -941 5205 4525 2487 83 20 0 chr15 15176700 15177049 -70518705 - L1PB1 LINE L1 0 6151 5796 386 209 0 19 chr15 15177051 15177156 -70518598 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 759 73 0 9 chr15 15177160 15177270 -70518484 - L1PB1 LINE L1 -361 5790 5682 22 0 0 0 chr15 15181183 15181205 -70514549 + AT_rich Low_complexity Low_complexity 1 22 0 545 279 186 23 chr15 15182609 15182996 -70512758 + LTR16A LTR ERVL 1 450 0 4674 60 0 0 chr15 15183015 15183650 -70512104 - L1P LINE L1 -798 5348 4714 5832 48 1 0 chr15 15183650 15184357 -70511397 + L1PA5 LINE L1 5441 6154 0 2241 118 3 3 chr15 15184868 15185174 -70510580 - AluSx SINE Alu -4 308 3 326 226 43 70 chr15 15185822 15185937 -70509817 - L1ME2 LINE L1 -116 6048 5937 325 71 107 0 chr15 15185982 15186038 -70509716 - L1MA2 LINE L1 -4 6300 6239 1338 172 54 54 chr15 15186040 15186372 -70509382 - L1ME2 LINE L1 -216 5946 5615 827 166 108 25 chr15 15186373 15186617 -70509137 - L1ME2 LINE L1 -662 5500 5236 1998 55 0 27 chr15 15186633 15186890 -70508864 - AluY SINE Alu -18 293 44 601 270 77 69 chr15 15186893 15186965 -70508789 - L1MEc LINE L1 -4267 2558 2488 561 88 0 0 chr15 15186965 15187045 -70508709 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 2181 156 5 16 chr15 15187045 15187423 -70508331 + THE1C LTR MaLR 2 375 0 2416 132 70 2 chr15 15187432 15187833 -70507921 - MSTA LTR MaLR 0 428 1 601 270 77 69 chr15 15187833 15188271 -70507483 - L1MEc LINE L1 -4344 2481 2033 307 331 55 21 chr15 15188462 15188607 -70507147 - L1MEc LINE L1 -5058 1588 1439 683 280 4 33 chr15 15188620 15188895 -70506859 - L1MEc LINE L1 -5368 1178 912 329 325 89 18 chr15 15188952 15189121 -70506633 - L1MEc LINE L1 -5646 896 716 1867 189 0 3 chr15 15190959 15191265 -70504489 - AluJb SINE Alu -7 305 1 491 222 0 67 chr15 15191363 15191498 -70504256 + MER5B DNA MER1_type 1 126 -52 443 264 222 0 chr15 15194373 15194517 -70501237 - MER5A DNA MER1_type -1 188 13 187 400 32 26 chr15 15194910 15195065 -70500689 - L2 LINE L2 -20 3252 3097 323 270 31 38 chr15 15196436 15196595 -70499159 + Charlie8 DNA MER1_type 26 183 -2234 551 242 132 6 chr15 15196875 15197057 -70498697 - MER5C DNA MER1_type -2 322 118 4808 60 0 0 chr15 15197275 15197877 -70497877 - L1PA5 LINE L1 0 6154 5553 600 244 0 0 chr15 15200317 15200440 -70495314 - MER5C DNA MER1_type -200 124 2 754 253 82 69 chr15 15200545 15200924 -70494830 - MLT1J LTR MaLR -11 500 117 223 292 79 0 chr15 15201152 15201241 -70494513 - L2 LINE L2 -49 3264 3169 244 224 0 82 chr15 15201781 15201879 -70493875 - L1MC4 LINE L1 -1339 6703 6614 10486 65 15 3 chr15 15201898 15204043 -70491711 - L1PA6 LINE L1 -15 6139 3973 555 248 75 0 chr15 15204556 15204717 -70491037 + MLT1B LTR MaLR 1 173 -217 358 127 28 0 chr15 15204735 15204806 -70490948 + CT-rich Low_complexity Low_complexity 2 74 0 748 234 68 10 chr15 15204807 15204999 -70490755 + MLT1B LTR MaLR 188 390 0 225 132 0 0 chr15 15205163 15205201 -70490553 + (CA)n Simple_repeat Simple_repeat 2 39 0 453 226 41 87 chr15 15205471 15205666 -70490088 - L2 LINE L2 0 3313 3128 14441 31 0 1 chr15 15205928 15208484 -70487270 - L1PA3 LINE L1 0 6155 3652 25 31 0 0 chr15 15208598 15208630 -70487124 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr15 15209218 15209246 -70486508 + AT_rich Low_complexity Low_complexity 1 28 0 918 154 37 0 chr15 15209393 15209555 -70486199 + L1PA10 LINE L1 5998 6165 -3 1133 177 47 115 chr15 15210175 15210576 -70485178 - MLT1A2 LTR MaLR 0 374 1 1212 178 43 26 chr15 15210971 15211274 -70484480 - L1MA7 LINE L1 0 6291 5984 1664 178 9 14 chr15 15211276 15211624 -70484130 + L1MA7 LINE L1 5636 5981 -310 275 280 229 11 chr15 15211894 15212069 -70483685 + L3 LINE CR1 456 668 -909 246 293 61 50 chr15 15212365 15212464 -70483290 + L2 LINE L2 3195 3294 -19 345 324 101 14 chr15 15214636 15214775 -70480979 - MIR SINE MIR -12 250 100 492 222 37 9 chr15 15214827 15214935 -70480819 + L2 LINE L2 3197 3307 -6 245 322 144 0 chr15 15215194 15215284 -70480470 - L2 LINE L2 -5 3267 3165 1584 191 58 43 chr15 15215467 15215953 -70479801 + Charlie1b DNA MER1_type 31 523 0 275 333 15 30 chr15 15215960 15216092 -70479662 - L2 LINE L2 -292 2980 2851 202 237 68 0 chr15 15216212 15216271 -70479483 + GA-rich Low_complexity Low_complexity 4 66 0 350 341 76 8 chr15 15216442 15216574 -70479180 + MIR SINE MIR 37 177 -85 398 264 103 50 chr15 15218209 15218470 -70477284 - L1ME4a LINE L1 -40 6081 5807 362 302 43 43 chr15 15218570 15218686 -70477068 - L2 LINE L2 0 3272 3157 593 216 137 13 chr15 15219444 15219806 -70475948 + MLT1E3 LTR MaLR 138 624 0 196 227 15 76 chr15 15220092 15220158 -70475596 - L2 LINE L2 -183 3089 3028 200 318 0 30 chr15 15221851 15221917 -70473837 + MIR SINE MIR 77 140 -68 1898 179 11 22 chr15 15222447 15222816 -70472938 + MLT1A1 LTR MaLR 1 365 0 808 31 0 0 chr15 15223708 15223806 -70471948 - L1PA4 LINE L1 -259 5896 5799 1908 65 4 0 chr15 15223806 15224052 -70471702 + L1PA4 LINE L1 5904 6152 -3 207 250 0 0 chr15 15224102 15224146 -70471608 + (CAA)n Simple_repeat Simple_repeat 2 45 0 543 292 17 11 chr15 15224160 15224338 -70471416 - MIR SINE MIR -19 243 65 1901 168 19 3 chr15 15224367 15224743 -70471011 + L1MB3 LINE L1 5800 6181 -2 22 0 0 0 chr15 15225679 15225701 -70470053 + AT_rich Low_complexity Low_complexity 1 22 0 231 206 33 11 chr15 15227647 15227739 -70468015 + (TTA)n Simple_repeat Simple_repeat 1 94 0 208 150 25 0 chr15 15228094 15228134 -70467620 + CT-rich Low_complexity Low_complexity 2 42 0 1159 117 6 9 chr15 15228619 15228926 -70466828 - THE1C LTR MaLR -1 374 1 230 271 186 8 chr15 15228986 15229115 -70466639 - MIR SINE MIR -1 261 110 206 295 84 21 chr15 15229177 15229272 -70466482 - MIR SINE MIR -136 126 26 1991 154 133 18 chr15 15229991 15230375 -70465379 - MSTA LTR MaLR 0 428 1 733 188 7 0 chr15 15231508 15231646 -70464108 - MER67A LTR ERV1 0 543 405 988 95 65 6 chr15 15231671 15231839 -70463915 - L1MA3 LINE L1 0 6305 6128 4156 55 4 0 chr15 15231839 15232364 -70463390 - L1PA7 LINE L1 -1 6153 5627 1110 199 31 68 chr15 15232369 15232695 -70463059 - MER67A LTR ERV1 -131 412 99 387 0 0 0 chr15 15232704 15232747 -70463007 + (TG)n Simple_repeat Simple_repeat 1 43 0 602 112 31 0 chr15 15232797 15232895 -70462859 - MER67A LTR ERV1 -442 101 1 1470 223 0 11 chr15 15234255 15234537 -70461217 + AluJo SINE Alu 4 282 -30 293 303 0 0 chr15 15235755 15235821 -70459933 - L2 LINE L2 -2 3270 3205 269 225 14 0 chr15 15236169 15236249 -70459505 - L1MC/D LINE L1 -298 5823 5751 355 321 195 36 chr15 15236261 15236538 -70459216 - L1MC/D LINE L1 -2034 5774 5454 794 249 41 0 chr15 15236561 15236758 -70458996 - MLT1A1 LTR MaLR 0 365 161 33 0 0 0 chr15 15236966 15236999 -70458755 + AT_rich Low_complexity Low_complexity 1 33 0 33 0 0 42 chr15 15237551 15237572 -70458182 + AT_rich Low_complexity Low_complexity 1 21 -25 2958 3 0 0 chr15 15237572 15237890 -70457864 - AluYb8 SINE Alu 0 318 1 33 0 0 42 chr15 15237890 15237916 -70457838 + AT_rich Low_complexity Low_complexity 21 46 0 424 228 0 22 chr15 15238219 15238311 -70457443 + MER21B LTR ERV1 1 90 -773 2576 197 89 21 chr15 15238333 15238938 -70456816 + MER21B LTR ERV1 19 664 -199 2277 107 13 24 chr15 15238972 15239345 -70456409 - THE1C LTR MaLR -6 369 1 466 172 99 93 chr15 15239345 15239495 -70456259 + MER21B LTR ERV1 665 815 -48 1348 185 0 9 chr15 15239672 15239894 -70455860 - AluJo SINE Alu -9 303 84 763 295 85 48 chr15 15240198 15240617 -70455137 - LTR33 LTR ERVL -2 519 80 2001 110 0 0 chr15 15240617 15240880 -70454874 - AluSg SINE Alu -16 294 32 763 295 85 48 chr15 15240880 15240918 -70454836 - LTR33 LTR ERVL -441 80 45 2939 249 73 37 chr15 15241066 15241390 -70454364 - L1MEc LINE L1 -2635 3580 3269 21999 29 3 0 chr15 15241390 15244831 -70450923 - L1PA3 LINE L1 -5 6150 2702 2939 249 73 37 chr15 15244831 15246261 -70449493 - L1MEc LINE L1 -2946 3269 1808 8251 157 5 7 chr15 15246323 15248955 -70446799 - L1MA2 LINE L1 -3 6301 3675 412 339 77 15 chr15 15249333 15249528 -70446226 + MIR SINE MIR 41 247 -15 253 310 69 44 chr15 15249581 15249757 -70445997 + MIR3 SINE MIR 8 187 -63 2325 87 3 0 chr15 15249846 15250133 -70445621 + AluSp SINE Alu 1 288 -25 180 97 0 0 chr15 15250215 15250246 -70445508 + (A)n Simple_repeat Simple_repeat 1 31 0 284 249 41 66 chr15 15250755 15250946 -70444808 - LTR41 LTR ERVL -5 784 578 387 255 80 22 chr15 15251496 15251662 -70444092 - MIR SINE MIR -62 146 7 2183 123 0 3 chr15 15252926 15253228 -70442526 - AluJb SINE Alu -9 303 3 182 333 13 13 chr15 15253498 15253576 -70442178 - L2 LINE L2 -13 3300 3223 210 43 22 43 chr15 15253803 15253849 -70441905 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 378 61 0 0 chr15 15255574 15255623 -70440131 + (TATATG)n Simple_repeat Simple_repeat 3 51 0 385 314 33 16 chr15 15255977 15256098 -70439656 - L2 LINE L2 -14 3258 3136 318 281 0 21 chr15 15256150 15256246 -70439508 - L1MC4 LINE L1 -1335 6707 6614 207 0 0 0 chr15 15256246 15256269 -70439485 + (CA)n Simple_repeat Simple_repeat 2 24 0 385 253 0 12 chr15 15256293 15256463 -70439291 + (TA)n Simple_repeat Simple_repeat 2 169 0 892 131 12 48 chr15 15256601 15256769 -70438985 - MLT2B1 LTR ERVL -253 267 106 371 352 56 20 chr15 15257151 15257347 -70438407 - MIR SINE MIR -48 214 12 201 393 89 0 chr15 15257665 15257777 -70437977 + L2 LINE L2 3151 3272 0 297 235 25 0 chr15 15258103 15258184 -70437570 - MLT-int LTR MaLR -977 758 676 2064 212 37 6 chr15 15258201 15258691 -70437063 - MLT-int LTR MaLR -1230 505 1 1679 189 76 70 chr15 15258693 15259205 -70436549 - MLT2B1 LTR ERVL -5 515 1 183 189 0 0 chr15 15259677 15259714 -70436040 - L2 LINE L2 0 3313 3277 23 68 0 0 chr15 15261337 15261381 -70434373 + AT_rich Low_complexity Low_complexity 1 44 0 181 355 84 9 chr15 15261543 15261650 -70434104 - L3b LINE CR1 -133 1450 1336 627 209 27 120 chr15 15262399 15262658 -70433096 + MER112 DNA MER1_type 19 253 -7 270 301 136 0 chr15 15263284 15263387 -70432367 - L2 LINE L2 -2 3311 3195 683 137 51 0 chr15 15263443 15263639 -70432115 - L1PA16 LINE L1 0 6166 5926 759 264 77 0 chr15 15263986 15264259 -70431495 + Charlie4a DNA MER1_type 37 330 -178 580 211 12 12 chr15 15264429 15264590 -70431164 + Charlie4a DNA MER1_type 340 500 -8 2071 165 135 5 chr15 15265843 15266286 -70429468 + MLT1D LTR MaLR 3 503 -2 316 275 0 12 chr15 15266293 15266373 -70429381 + MIR SINE MIR 15 93 -169 2556 60 0 13 chr15 15268569 15268884 -70426870 - AluY SINE Alu 0 311 1 818 264 14 9 chr15 15270344 15270560 -70425194 - MER20 DNA MER1_type -1 218 2 778 239 40 21 chr15 15273159 15273390 -70422364 - MIR SINE MIR -1 261 19 24 0 0 0 chr15 15274230 15274254 -70421500 + AT_rich Low_complexity Low_complexity 1 24 0 238 161 0 89 chr15 15274291 15274347 -70421407 + MER5B DNA MER1_type 1 51 -127 188 229 21 0 chr15 15274488 15274536 -70421218 - L2 LINE L2 0 3313 3265 435 249 48 79 chr15 15275036 15275201 -70420553 + MIR3 SINE MIR 35 194 -14 2063 223 72 2 chr15 15275649 15276231 -70419523 + L1ME3A LINE L1 5548 6170 0 276 288 89 48 chr15 15276231 15276377 -70419377 - MIR SINE MIR -51 211 60 289 182 0 0 chr15 15276422 15276466 -70419288 + L2 LINE L2 3251 3294 -19 537 293 63 0 chr15 15278158 15278332 -70417422 + MIR SINE MIR 52 236 -26 26 30 0 0 chr15 15278447 15278480 -70417274 + AT_rich Low_complexity Low_complexity 1 33 0 754 206 0 0 chr15 15278555 15278686 -70417068 + FLAM_C SINE Alu 1 131 -2 490 278 101 35 chr15 15278892 15279230 -70416524 - LTR33 LTR ERVL -159 362 3 342 355 36 24 chr15 15281732 15281898 -70413856 + MIR SINE MIR 23 190 -72 309 290 53 0 chr15 15282465 15282596 -70413158 + L1MC4a LINE L1 5792 5929 -1879 234 325 111 8 chr15 15282929 15283055 -70412699 - MIR SINE MIR -56 206 68 246 268 89 94 chr15 15283943 15284178 -70411576 - L2 LINE L2 -55 3258 3025 186 71 0 0 chr15 15286664 15286692 -70409062 + (A)n Simple_repeat Simple_repeat 1 28 0 209 278 0 0 chr15 15287892 15287946 -70407808 + (CATA)n Simple_repeat Simple_repeat 2 55 0 349 52 0 35 chr15 15288180 15288238 -70407516 + (CA)n Simple_repeat Simple_repeat 1 56 0 217 303 110 18 chr15 15288621 15288730 -70407024 - MIR SINE MIR -17 245 127 1545 186 20 17 chr15 15289388 15289684 -70406070 + AluJo SINE Alu 1 297 -15 1120 142 44 18 chr15 15289706 15290072 -70405682 + MSTA LTR MaLR 1 422 -6 225 305 42 34 chr15 15290362 15290480 -70405274 + MLT1J2 LTR MaLR 281 399 -51 1276 162 101 10 chr15 15291042 15291338 -70404416 - MER33 DNA MER1_type -1 323 1 239 246 0 15 chr15 15291672 15291737 -70404017 + (TG)n Simple_repeat Simple_repeat 1 64 0 246 310 149 40 chr15 15291797 15291971 -70403783 + MIR SINE MIR 38 230 -32 211 374 38 15 chr15 15291981 15292112 -70403642 - L2 LINE L2 -498 2816 2683 213 39 0 0 chr15 15293416 15293442 -70402312 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr15 15293971 15293994 -70401760 + AT_rich Low_complexity Low_complexity 1 23 0 3809 155 41 0 chr15 15296017 15296725 -70399029 + L1MA9 LINE L1 5571 6307 -5 423 339 17 17 chr15 15298577 15298754 -70397000 - MIR SINE MIR -73 189 13 1910 192 120 5 chr15 15298771 15299214 -70396540 - MLT1D LTR MaLR 0 505 12 783 286 64 31 chr15 15299754 15300145 -70395609 + MLT1I LTR MaLR 3 406 -3 1751 189 3 10 chr15 15300604 15300905 -70394849 - AluJb SINE Alu -13 299 1 2231 103 0 10 chr15 15302274 15302575 -70393179 + AluSc SINE Alu 1 298 -11 2476 51 0 29 chr15 15306054 15306368 -70389386 + AluY SINE Alu 1 305 -6 324 252 150 20 chr15 15307419 15307906 -70387848 + L1ME4a LINE L1 5494 6096 -25 269 153 0 17 chr15 15308063 15308122 -70387632 + (TA)n Simple_repeat Simple_repeat 1 58 0 2648 135 23 61 chr15 15308230 15308757 -70386997 - L1MC1 LINE L1 0 6333 5827 1914 224 42 22 chr15 15308757 15309681 -70386073 - L1M4 LINE L1 -3435 2535 1590 3255 229 27 33 chr15 15309710 15310760 -70384994 - L1M4 LINE L1 -4535 1437 395 1229 226 52 15 chr15 15310762 15311090 -70384664 - MLT1A1 LTR MaLR -12 353 14 304 297 9 18 chr15 15311131 15311242 -70384512 - L1M3c LINE L1 -5117 1024 915 409 345 41 41 chr15 15311335 15311700 -70384054 - L1M4 LINE L1 -5526 365 1 2347 192 19 0 chr15 15311706 15312180 -70383574 - L1MC/D LINE L1 -513 5820 5338 230 213 0 21 chr15 15315810 15315857 -70379897 - L2 LINE L2 -73 3240 3195 198 286 204 10 chr15 15316195 15316293 -70379461 + MIR SINE MIR 19 135 -73 472 260 0 57 chr15 15316338 15316461 -70379293 - L2 LINE L2 -1 3312 3197 470 207 0 99 chr15 15317546 15317667 -70378087 + L2 LINE L2 3201 3309 -4 512 228 325 5 chr15 15317688 15317885 -70377869 - MIR SINE MIR -1 261 2 47 33 0 0 chr15 15317936 15317997 -70377757 + AT_rich Low_complexity Low_complexity 1 61 0 926 266 13 26 chr15 15318115 15318348 -70377406 + MIR SINE MIR 33 262 0 191 35 0 35 chr15 15319031 15319060 -70376694 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 235 150 0 0 chr15 15320465 15320505 -70375249 - LTR67 LTR ERVL 0 557 518 371 323 172 16 chr15 15320514 15320706 -70375048 + MIR SINE MIR 21 242 -20 363 154 0 0 chr15 15320713 15320778 -70374976 + (CAT)n Simple_repeat Simple_repeat 1 65 0 806 341 108 10 chr15 15321312 15321954 -70373800 + L2 LINE L2 2355 3054 -218 4060 210 131 10 chr15 15322878 15324174 -70371580 - Charlie1 DNA MER1_type -6 2755 1 22 0 0 0 chr15 15324328 15324350 -70371404 + AT_rich Low_complexity Low_complexity 1 22 0 210 207 256 12 chr15 15326172 15326254 -70369500 - MIR3 SINE MIR -4 204 103 1358 132 47 0 chr15 15426630 15426843 -70268911 + AluSg/x SINE Alu 90 312 0 238 167 62 0 chr15 15426885 15426933 -70268821 - L1MC4a LINE L1 -343 7465 7415 297 314 33 33 chr15 15427018 15427171 -70268583 - L1MC4a LINE L1 -412 7396 7244 649 224 65 20 chr15 15427174 15427419 -70268335 - L1MC5 LINE L1 -713 7248 6993 303 230 7 93 chr15 15427459 15427555 -70268199 - L1MC4 LINE L1 -945 7097 7015 1795 165 10 7 chr15 15427555 15427858 -70267896 - AluJb SINE Alu -8 304 1 303 230 7 93 chr15 15427858 15427900 -70267854 - L1MC4 LINE L1 -1027 7015 6971 2232 107 0 10 chr15 15428124 15428422 -70267332 - AluSg SINE Alu -15 295 1 2402 85 3 3 chr15 15428735 15429040 -70266714 - AluSq SINE Alu -8 305 1 245 178 0 22 chr15 15429390 15429435 -70266319 + MLT1D LTR MaLR 1 44 -461 713 268 103 65 chr15 15429556 15429889 -70265865 - L2 LINE L2 -197 3116 2779 2202 120 3 0 chr15 15429893 15430184 -70265570 - AluSg SINE Alu -18 292 1 1609 123 4 0 chr15 15430309 15430537 -70265217 - AluSq SINE Alu 0 313 85 1210 129 0 0 chr15 15430651 15430822 -70264932 + AluSc SINE Alu 126 296 -13 246 301 62 0 chr15 15431519 15431632 -70264122 + L1M4 LINE L1 4913 5032 -1114 2173 130 10 0 chr15 15431849 15432150 -70263604 + AluSx SINE Alu 1 304 -8 207 301 12 0 chr15 15432419 15432502 -70263252 + (CATA)n Simple_repeat Simple_repeat 3 86 0 2400 90 3 0 chr15 15432669 15432970 -70262784 - AluSp SINE Alu -11 302 1 718 220 112 58 chr15 15434047 15434366 -70261388 + LTR54 LTR ERV1 78 482 -28 1060 161 0 0 chr15 15434367 15434528 -70261226 + AluSq SINE Alu 1 161 -152 595 163 0 0 chr15 15434629 15434715 -70261039 - AluS SINE Alu -225 88 3 21 0 0 0 chr15 15435220 15435241 -70260513 + AT_rich Low_complexity Low_complexity 1 21 0 794 269 0 0 chr15 15435241 15435397 -70260357 - AluSg/x SINE Alu -23 289 134 2183 121 16 0 chr15 15435416 15435721 -70260033 - AluSx SINE Alu -2 310 1 826 253 29 17 chr15 15435737 15435978 -70259776 - L1ME3A LINE L1 -2 6168 5925 623 196 101 22 chr15 15435979 15436117 -70259637 - MER63 DNA MER1_type -61 775 1 306 167 0 33 chr15 15436119 15436179 -70259575 - L2 LINE L2 -68 3245 3188 616 250 93 0 chr15 15436417 15436557 -70259197 + MER21B LTR ERV1 338 490 -373 249 204 0 0 chr15 15436592 15436636 -70259118 + LTR54B LTR ERV1 409 452 -46 4151 219 47 11 chr15 15436645 15436874 -70258880 + L1M2 LINE L1 1226 1445 -5404 2332 151 68 29 chr15 15436874 15437099 -70258655 - MSTA LTR MaLR -2 426 176 333 0 0 0 chr15 15437099 15437136 -70258618 + (TG)n Simple_repeat Simple_repeat 1 37 0 2332 151 68 29 chr15 15437136 15437320 -70258434 - MSTA LTR MaLR -252 176 1 4151 219 47 11 chr15 15437320 15438097 -70257657 + L1M2 LINE L1 1445 2268 -4581 241 108 27 0 chr15 15438098 15438135 -70257619 + Alu SINE Alu 1 38 -95 1486 143 57 23 chr15 15438232 15438532 -70257222 - L1MA4 LINE L1 0 6300 5991 6005 38 19 0 chr15 15438632 15439312 -70256442 + L1PA5 LINE L1 5445 6137 -17 913 247 18 0 chr15 15439313 15439536 -70256218 + L1M2 LINE L1 3390 3616 -3232 207 0 0 0 chr15 15439543 15439566 -70256188 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1066 199 70 0 chr15 15439604 15439860 -70255894 + L1M2 LINE L1 4175 4448 -2400 441 240 10 0 chr15 15439855 15439959 -70255795 + L1M2 LINE L1 4937 5041 -1807 * 266 279 0 0 chr15 15439959 15440020 -70255734 + MER2 DNA MER2_type 1 61 -284 * 4327 173 7 18 chr15 15439966 15440696 -70255058 - MER44D DNA MER2_type -7 598 5 450 252 84 0 chr15 15440798 15440953 -70254801 + L1MC4 LINE L1 7190 7357 -685 731 180 55 0 chr15 15440953 15441081 -70254673 - FLAM_C SINE Alu -7 136 2 37 23 0 0 chr15 15441661 15441705 -70254049 + AT_rich Low_complexity Low_complexity 1 44 0 626 281 101 34 chr15 15441719 15442047 -70253707 - L1MC4a LINE L1 -1737 6071 5722 2272 104 0 3 chr15 15442083 15442381 -70253373 + AluSx SINE Alu 1 297 -15 643 110 0 0 chr15 15442388 15442470 -70253284 + AluS SINE Alu 2 83 -229 3676 158 35 21 chr15 15442570 15443316 -70252438 + L1M2 LINE L1 1928 2683 -4166 514 77 0 0 chr15 15443416 15443481 -70252273 - AluS SINE Alu -247 65 1 27 29 0 0 chr15 15443844 15443878 -70251876 + AT_rich Low_complexity Low_complexity 1 34 0 757 282 119 12 chr15 15446010 15446262 -70249492 - LTR33 LTR ERVL -234 287 9 304 287 51 41 chr15 15446292 15446487 -70249267 - L1MEd LINE L1 -5394 725 529 29 47 0 0 chr15 15446711 15446754 -70249000 + AT_rich Low_complexity Low_complexity 1 43 0 2253 106 0 3 chr15 15446759 15447061 -70248693 + AluSg SINE Alu 1 301 -9 2793 155 37 18 chr15 15447063 15447553 -70248201 - L1MB3 LINE L1 -10 6173 5675 350 352 45 39 chr15 15447683 15447862 -70247892 + MER91A DNA MER1_type 1 180 -16 349 291 8 34 chr15 15447873 15447990 -70247764 - L1MEd LINE L1 -5926 193 80 1717 150 44 98 chr15 15448060 15448446 -70247308 - MLT1A1 LTR MaLR 0 365 1 2084 83 4 0 chr15 15448495 15448747 -70247007 - AluSp SINE Alu -60 253 1 239 194 0 0 chr15 15448784 15448820 -70246934 + Alu SINE Alu 124 159 -143 2173 101 0 3 chr15 15448974 15449261 -70246493 - AluSq SINE Alu -26 287 2 1029 107 13 0 chr15 15449362 15449594 -70246160 + L1MA8 LINE L1 5620 5950 -341 2274 109 3 0 chr15 15450075 15450377 -70245377 + AluSq SINE Alu 9 311 -2 905 137 8 0 chr15 15450377 15450508 -70245246 + FLAM_C SINE Alu 1 132 -11 4062 185 83 15 chr15 15450516 15450993 -70244761 - MER21B LTR ERV1 -3 860 306 2273 95 3 0 chr15 15450993 15451287 -70244467 - AluSg SINE Alu -15 295 1 4062 185 83 15 chr15 15451287 15451600 -70244154 - MER21B LTR ERV1 -557 306 16 2037 124 13 0 chr15 15451600 15451907 -70243847 + MER2 DNA MER2_type 1 311 -34 1002 96 0 0 chr15 15452551 15452676 -70243078 + FLAM_C SINE Alu 1 125 -8 2292 78 3 0 chr15 15452700 15453012 -70242742 + AluSx SINE Alu 1 313 0 1831 185 35 78 chr15 15453521 15453694 -70242060 - MLT1C LTR MaLR -1 466 287 2177 115 7 0 chr15 15453694 15453999 -70241755 - AluSx SINE Alu -4 308 2 1831 185 35 78 chr15 15453999 15454217 -70241537 - MLT1C LTR MaLR -180 287 98 1691 94 75 130 chr15 15454217 15454548 -70241206 - AluSp SINE Alu 0 313 1 1831 185 35 78 chr15 15454548 15454642 -70241112 - MLT1C LTR MaLR -369 98 1 2058 25 0 8 chr15 15455396 15455631 -70240123 - AluY SINE Alu -11 300 68 1590 145 0 4 chr15 15455731 15455973 -70239781 - AluSx SINE Alu -71 241 1 1963 108 73 0 chr15 15457221 15457509 -70238245 - AluSx SINE Alu -3 309 1 317 323 58 26 chr15 15457512 15457606 -70238148 - MIR SINE MIR -17 245 143 5263 76 19 29 chr15 15457606 15458051 -70237703 + LTR8 LTR ERV1 1 438 -253 2085 116 3 7 chr15 15458051 15458352 -70237402 + AluSg SINE Alu 1 300 -10 5263 76 19 29 chr15 15458352 15458602 -70237152 + LTR8 LTR ERV1 438 689 -2 317 323 58 26 chr15 15458602 15458662 -70237092 - MIR SINE MIR -119 143 86 425 222 192 78 chr15 15458723 15458759 -70236995 - MER5A DNA MER1_type 0 189 158 2420 65 0 0 chr15 15458759 15459053 -70236701 + AluY SINE Alu 1 294 -17 2054 142 0 3 chr15 15459061 15459357 -70236397 + AluJb SINE Alu 1 295 -17 425 222 192 78 chr15 15459357 15459478 -70236276 - MER5A DNA MER1_type -37 152 4 613 222 48 8 chr15 15459610 15459831 -70235923 + MLT1D LTR MaLR 137 391 -96 237 367 75 8 chr15 15459869 15459989 -70235765 + L2 LINE L2 3128 3255 -17 1771 153 10 34 chr15 15460113 15460408 -70235346 - AluSx SINE Alu -24 288 1 1762 141 32 4 chr15 15460910 15461207 -70234547 - AluSx SINE Alu 0 305 1 21 36 0 0 chr15 15461230 15461258 -70234496 + AT_rich Low_complexity Low_complexity 1 28 0 2772 74 20 3 chr15 15461295 15461647 -70234107 - L1PA13 LINE L1 -2 6161 5804 3673 102 44 58 chr15 15461803 15461946 -70233808 - L1MA5A LINE L1 -3 6294 6150 2448 70 0 3 chr15 15461946 15462248 -70233506 - AluY SINE Alu -10 301 1 3673 102 44 58 chr15 15462248 15462743 -70233011 - L1MA5A LINE L1 -147 6150 5665 1836 214 23 15 chr15 15462744 15463241 -70232513 - L1 LINE L1 -3588 2794 2294 22 0 0 0 chr15 15464749 15464771 -70230983 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr15 15465174 15465195 -70230559 + AT_rich Low_complexity Low_complexity 1 21 0 387 188 70 102 chr15 15465215 15465343 -70230411 + L1MC4 LINE L1 7902 8025 -17 2233 105 7 0 chr15 15465360 15465656 -70230098 + AluSx SINE Alu 1 298 -14 1316 192 126 53 chr15 15465780 15466039 -70229715 + MER58B DNA MER1_type 1 240 -2180 180 0 0 0 chr15 15466039 15466059 -70229695 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 2286 84 7 0 chr15 15466066 15466350 -70229404 - AluSg SINE Alu -24 286 1 1316 192 126 53 chr15 15466350 15466400 -70229354 + MER58B DNA MER1_type 245 341 0 1084 53 8 0 chr15 15467271 15467402 -70228352 + AluSp SINE Alu 1 132 -181 2149 191 35 5 chr15 15467510 15467913 -70227841 + MLT1A1-int LTR MaLR 1321 1735 0 1883 175 8 38 chr15 15467913 15468278 -70227476 + MLT1A1 LTR MaLR 1 354 -11 3559 190 50 30 chr15 15468283 15468611 -70227143 + L1MC1 LINE L1 4415 4735 -1598 2426 77 7 0 chr15 15468611 15468909 -70226845 + AluSx SINE Alu 1 300 -12 3559 190 50 30 chr15 15468909 15469313 -70226441 + L1MC1 LINE L1 4735 5129 -1204 2119 125 0 3 chr15 15469313 15469598 -70226156 + AluSx SINE Alu 1 286 -26 230 0 0 32 chr15 15469598 15469629 -70226125 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2119 125 0 3 chr15 15469629 15469640 -70226114 + AluSx SINE Alu 286 296 -16 3559 190 50 30 chr15 15469640 15470332 -70225422 + L1MC1 LINE L1 5129 5870 -463 9868 97 11 9 chr15 15470332 15471616 -70224138 + HSMAR1 DNA Mariner 1 1287 0 3559 190 50 30 chr15 15471616 15471643 -70224111 + L1MC1 LINE L1 5870 5895 -438 556 73 0 0 chr15 15471744 15471812 -70223942 - AluS SINE Alu -244 69 2 1068 200 31 0 chr15 15471850 15472045 -70223709 - MER3 DNA MER1_type -1 208 8 1455 194 0 32 chr15 15473058 15473342 -70222412 + AluJo SINE Alu 11 285 -27 288 0 0 0 chr15 15473343 15473375 -70222379 + (TA)n Simple_repeat Simple_repeat 1 32 0 2154 91 40 13 chr15 15473445 15473743 -70222011 + AluSq SINE Alu 1 306 -7 648 146 64 0 chr15 15473824 15473934 -70221820 - MER94 DNA DNA -17 117 1 2292 115 0 3 chr15 15475349 15475653 -70220101 + AluSx SINE Alu 1 303 -9 1100 131 0 0 chr15 15475792 15475945 -70219809 + AluSx SINE Alu 5 157 -155 732 148 0 9 chr15 15476558 15476702 -70219052 + FLAM_A SINE Alu 8 150 0 2307 112 0 0 chr15 15476747 15477059 -70218695 + AluSx SINE Alu 1 312 0 2289 119 0 3 chr15 15477144 15477446 -70218308 + AluSx SINE Alu 1 301 -11 872 144 0 23 chr15 15477458 15477590 -70218164 + FLAM_C SINE Alu 3 131 -2 287 175 0 79 chr15 15477609 15477672 -70218082 - L2 LINE L2 -45 3268 3211 902 279 29 16 chr15 15477900 15477980 -70217774 - MER115 DNA AcHobo -2 691 613 2534 56 0 0 chr15 15477980 15478283 -70217471 + AluY SINE Alu 1 303 -8 902 279 29 16 chr15 15478283 15478446 -70217308 - MER115 DNA AcHobo -80 613 445 3395 225 73 9 chr15 15478474 15479273 -70216481 + MER21B LTR ERV1 3 852 -11 1290 301 37 32 chr15 15479305 15479740 -70216014 - MER115 DNA AcHobo -256 437 1 2260 107 0 3 chr15 15479769 15480069 -70215685 - AluSg SINE Alu -10 300 2 1240 146 0 0 chr15 15480578 15480756 -70214998 - AluSg/x SINE Alu -1 311 134 2304 101 0 10 chr15 15480756 15481053 -70214701 - AluSq SINE Alu -19 294 1 2380 102 0 6 chr15 15481056 15481369 -70214385 - AluSx SINE Alu -1 311 1 355 327 39 18 chr15 15481405 15481533 -70214221 - MIR SINE MIR -81 127 2 1989 129 3 10 chr15 15481554 15481867 -70213887 - AluSx SINE Alu 0 312 1 15369 201 29 17 chr15 15482206 15483670 -70212084 - L1MA4A LINE L1 -379 6566 5122 225 0 0 0 chr15 15483670 15483695 -70212059 + (TATTG)n Simple_repeat Simple_repeat 2 26 0 15369 201 29 17 chr15 15483695 15486487 -70209267 - L1MA4A LINE L1 -1823 5122 2203 2116 104 4 0 chr15 15486487 15486755 -70208999 - AluSp SINE Alu -16 297 29 2197 122 16 0 chr15 15487614 15487918 -70207836 + AluSx SINE Alu 1 309 -3 1432 223 141 76 chr15 15487977 15488752 -70207002 + LTR1B LTR ERV1 2 826 0 1958 128 80 14 chr15 15488795 15489147 -70206607 + THE1C LTR MaLR 1 375 0 538 163 0 0 chr15 15489408 15489500 -70206254 + L1MDa LINE L1 22 113 -6427 1838 224 116 0 chr15 15489512 15490012 -70205742 + L1MDa LINE L1 210 767 -5773 1665 232 45 26 chr15 15490340 15490809 -70204945 + MLT1E LTR MaLR 116 593 0 2897 98 9 5 chr15 15490818 15491238 -70204516 + L1PA10 LINE L1 5747 6168 0 191 241 69 0 chr15 15491244 15491302 -70204452 + MIR SINE MIR 179 240 -22 1978 125 3 10 chr15 15492404 15492700 -70203054 - AluSx SINE Alu 0 312 19 2509 64 3 0 chr15 15492858 15493156 -70202598 - AluSp SINE Alu -14 299 1 1754 126 8 12 chr15 15494412 15494667 -70201087 - AluJb SINE Alu -11 301 48 2163 110 0 0 chr15 15494770 15495062 -70200692 - AluSx SINE Alu -10 302 11 527 221 0 0 chr15 15495075 15495179 -70200575 - MLT-int LTR MaLR -1312 423 320 4113 177 15 47 chr15 15495180 15495649 -70200105 + L1PB2 LINE L1 3436 3919 -2227 2182 107 31 0 chr15 15495649 15495939 -70199815 + AluSx SINE Alu 1 299 -13 4113 177 15 47 chr15 15495939 15496484 -70199270 + L1PB2 LINE L1 3919 4417 -1729 1413 116 0 20 chr15 15496484 15496722 -70199032 + AluSg/x SINE Alu 88 321 0 5775 142 10 36 chr15 15496729 15496825 -70198929 + L1PB2 LINE L1 4396 4493 -1658 2063 98 8 0 chr15 15496825 15497091 -70198663 + AluSq SINE Alu 1 268 -45 5775 142 10 36 chr15 15497091 15497698 -70198056 + L1PB2 LINE L1 4493 5114 -1037 2383 64 0 0 chr15 15497698 15498001 -70197753 + AluY SINE Alu 1 303 0 5775 142 10 36 chr15 15498001 15499105 -70196649 + L1PB2 LINE L1 5114 6148 -3 1568 220 3 0 chr15 15499108 15499440 -70196314 - MLT-int LTR MaLR -1402 333 1 1838 194 72 16 chr15 15499455 15499841 -70195913 - MLT2B1 LTR ERVL -50 470 63 1778 112 0 8 chr15 15499845 15500094 -70195660 + AluSq SINE Alu 67 313 0 3747 237 48 20 chr15 15500121 15501346 -70194408 - L1M4 LINE L1 -1743 4403 3144 1408 203 125 8 chr15 15501502 15501887 -70193867 + MER63B DNA MER1_type 1 430 -6 439 290 57 62 chr15 15501888 15502064 -70193690 - L1MEd LINE L1 -4886 1233 1059 1203 111 55 50 chr15 15502064 15502263 -70193491 - AluJb SINE Alu -8 304 105 555 56 0 0 chr15 15503765 15503836 -70191918 + (TA)n Simple_repeat Simple_repeat 1 71 0 2550 80 0 0 chr15 15503854 15504165 -70191589 - AluY SINE Alu 0 311 1 319 295 125 30 chr15 15504901 15505101 -70190653 - MIR SINE MIR -42 220 2 2193 92 11 0 chr15 15506290 15506571 -70189183 + AluSc SINE Alu 24 307 -2 813 269 113 45 chr15 15506589 15506916 -70188838 + L2 LINE L2 916 1276 -2038 2212 100 0 19 chr15 15506916 15507226 -70188528 - AluSx SINE Alu -8 304 1 813 269 113 45 chr15 15507226 15507295 -70188459 + L2 LINE L2 1276 1339 -1975 675 280 119 19 chr15 15507904 15508140 -70187614 - MIR SINE MIR -1 261 3 1507 269 62 72 chr15 15508331 15509090 -70186664 + L2 LINE L2 2303 3052 -261 896 249 42 117 chr15 15509098 15509555 -70186199 + MLT1G LTR MaLR 1 437 -131 1213 144 0 11 chr15 15509592 15509773 -70185981 - FRAM SINE Alu -5 171 1 692 220 82 69 chr15 15509841 15510073 -70185681 + L2 LINE L2 3074 3308 -5 2131 150 19 11 chr15 15510316 15510675 -70185079 + MLT1A1 LTR MaLR 4 365 0 2305 97 13 0 chr15 15511831 15512139 -70183615 - AluSx SINE Alu 0 312 1 206 271 29 57 chr15 15512300 15512370 -70183384 - L3 LINE CR1 -7 1570 1503 373 327 71 0 chr15 15512957 15513070 -70182684 + MIR3 SINE MIR 43 163 -45 262 348 30 30 chr15 15513104 15513268 -70182486 - MIR SINE MIR -50 212 49 28 48 0 0 chr15 15514303 15514345 -70181409 + AT_rich Low_complexity Low_complexity 1 42 0 5651 57 19 27 chr15 15514419 15514604 -70181150 - MER4E LTR ERV1 0 766 581 2181 107 4 0 chr15 15514604 15514907 -70180847 + AluSx SINE Alu 1 304 0 5651 57 19 27 chr15 15514907 15515491 -70180263 - MER4E LTR ERV1 -185 581 2 380 304 57 58 chr15 15517945 15518560 -70177194 - MER89-int LTR ERV1 -3070 3731 3118 1944 204 37 20 chr15 15518956 15519443 -70176311 - MER89-int LTR ERV1 -4062 4113 129 187 298 0 18 chr15 15520523 15520580 -70175174 + L3 LINE CR1 561 616 -961 4603 120 16 55 chr15 15521375 15522207 -70173547 - MER4E-int LTR ERV1 -5959 799 1 5147 78 38 28 chr15 15522207 15522551 -70173203 - MER4E LTR ERV1 0 766 427 2509 74 3 3 chr15 15522551 15522861 -70172893 + AluSp SINE Alu 1 310 -3 5147 78 38 28 chr15 15522861 15523274 -70172480 - MER4E LTR ERV1 -339 427 1 2271 93 33 3 chr15 15523384 15523684 -70172070 + AluSc SINE Alu 1 309 0 1933 112 45 0 chr15 15523946 15524250 -70171504 + AluSx SINE Alu 1 316 0 378 245 29 0 chr15 15524942 15525044 -70170710 - MIR3 SINE MIR -3 205 101 1295 169 89 0 chr15 15525618 15525855 -70169899 + Tigger7 DNA MER2_type 10 267 -2220 428 227 10 10 chr15 15525853 15525950 -70169804 + Tigger7 DNA MER2_type 2393 2489 -2 * 21 36 0 0 chr15 15526172 15526200 -70169554 + AT_rich Low_complexity Low_complexity 1 28 0 1891 139 14 23 chr15 15526374 15526720 -70169034 + L1PA16 LINE L1 5818 6160 -6 251 176 59 20 chr15 15526917 15527019 -70168735 + (TA)n Simple_repeat Simple_repeat 2 107 0 2206 133 0 0 chr15 15527394 15527695 -70168059 + AluSx SINE Alu 1 301 -11 591 231 7 42 chr15 15528398 15528541 -70167213 - L2 LINE L2 0 3313 3176 827 179 28 17 chr15 15529566 15529745 -70166009 + MER58C DNA MER1_type 29 209 -6 1678 124 0 0 chr15 15530195 15530420 -70165334 - AluSx SINE Alu -87 225 1 21 36 0 0 chr15 15530519 15530547 -70165207 + AT_rich Low_complexity Low_complexity 1 28 0 2765 224 101 47 chr15 15530681 15531594 -70164160 - L1MDa LINE L1 -5555 985 35 288 330 55 86 chr15 15531842 15532190 -70163564 + L2 LINE L2 2921 3257 -15 335 268 14 0 chr15 15532348 15532419 -70163335 - L2 LINE L2 -47 3225 3154 2149 114 0 20 chr15 15532659 15532957 -70162797 - AluSg SINE Alu -18 292 1 242 250 50 25 chr15 15533063 15533183 -70162571 + L1MC4a LINE L1 6052 6174 -1634 25 0 0 0 chr15 15533202 15533227 -70162527 + AT_rich Low_complexity Low_complexity 1 25 0 180 406 14 0 chr15 15533483 15533552 -70162202 + L2 LINE L2 3154 3223 -49 336 352 116 44 chr15 15534286 15534536 -70161218 + L2 LINE L2 2985 3252 -20 1794 58 9 4 chr15 15535384 15535610 -70160144 + AluSp SINE Alu 84 310 -3 2157 109 7 0 chr15 15535666 15535959 -70159795 + AluSp SINE Alu 1 295 -18 21 57 0 0 chr15 15536198 15536233 -70159521 + AT_rich Low_complexity Low_complexity 1 35 0 2121 108 24 0 chr15 15538147 15538435 -70157319 + AluSg SINE Alu 1 295 -15 2033 130 0 3 chr15 15538601 15538886 -70156868 + AluSg1 SINE Alu 1 284 -25 198 0 0 0 chr15 15538886 15538908 -70156846 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2093 106 31 14 chr15 15539112 15539404 -70156350 + AluSx SINE Alu 1 297 -15 186 353 0 0 chr15 15539549 15539617 -70156137 - MIR SINE MIR -122 86 19 304 127 139 25 chr15 15540820 15540899 -70154855 - MIR SINE MIR -55 207 120 543 253 186 9 chr15 15541838 15541961 -70153793 - MIR SINE MIR -1 261 161 2454 75 0 10 chr15 15541961 15542269 -70153485 + AluY SINE Alu 1 305 -6 543 253 186 9 chr15 15542269 15542366 -70153388 - MIR SINE MIR -101 161 2 1663 175 7 29 chr15 15542686 15542995 -70152759 - AluJo SINE Alu -10 302 1 319 204 0 139 chr15 15543304 15543412 -70152342 + MIR SINE MIR 57 149 -113 1870 135 0 8 chr15 15543420 15543687 -70152067 + AluSx SINE Alu 34 298 -14 774 165 0 24 chr15 15543764 15543891 -70151863 + FLAM_C SINE Alu 17 140 -3 903 131 0 0 chr15 15543936 15544058 -70151696 + AluSq/x SINE Alu 1 122 -191 2010 148 0 0 chr15 15544421 15544719 -70151035 - AluJb SINE Alu -14 298 1 205 182 11 80 chr15 15545109 15545197 -70150557 + A-rich Low_complexity Low_complexity 3 84 0 1896 139 7 13 chr15 15546307 15546608 -70149146 + AluJb SINE Alu 1 299 -13 317 201 120 19 chr15 15546646 15546750 -70149004 - L1MA10 LINE L1 -4 6158 6049 2075 134 0 0 chr15 15547865 15548156 -70147598 - AluSx SINE Alu -11 301 11 2044 105 0 21 chr15 15548495 15548781 -70146973 + AluSx SINE Alu 1 280 -32 411 276 188 0 chr15 15549027 15549197 -70146557 - L3 LINE CR1 -63 1514 1313 215 143 41 0 chr15 15549336 15549385 -70146369 + (CATA)n Simple_repeat Simple_repeat 4 54 0 2128 105 0 36 chr15 15549645 15549951 -70145803 + AluSx SINE Alu 1 295 -17 21 82 0 0 chr15 15550603 15550652 -70145102 + AT_rich Low_complexity Low_complexity 1 49 0 2009 108 37 24 chr15 15550832 15551129 -70144625 + AluSx SINE Alu 1 301 -11 2259 106 0 20 chr15 15551647 15551950 -70143804 + AluSx SINE Alu 1 297 -15 2152 92 14 3 chr15 15552326 15552610 -70143144 + AluSx SINE Alu 1 287 -25 2293 75 7 0 chr15 15552624 15552918 -70142836 + AluY SINE Alu 1 296 -15 433 81 23 105 chr15 15552938 15553024 -70142730 + AluSg/x SINE Alu 217 295 -17 235 233 105 83 chr15 15553310 15553507 -70142247 - MIR SINE MIR -33 229 30 219 239 23 11 chr15 15553830 15553918 -70141836 + (CCG)n Simple_repeat Simple_repeat 1 89 0 1331 234 70 0 chr15 15554767 15555066 -70140688 + Charlie1 DNA MER1_type 1 320 -2441 2240 97 0 20 chr15 15555524 15555823 -70139931 + AluSx SINE Alu 5 297 -15 2661 138 7 5 chr15 15555834 15556248 -70139506 + L1MB3 LINE L1 5769 6183 0 1157 195 178 10 chr15 15556258 15556556 -70139198 + L1ME3A LINE L1 5808 6155 -15 317 290 232 5 chr15 15556577 15556801 -70138953 + L3 LINE CR1 1097 1371 -206 424 306 101 5 chr15 15556858 15557057 -70138697 + MIR SINE MIR 30 247 -15 251 135 14 0 chr15 15557148 15557191 -70138563 - MIR SINE MIR -90 118 74 374 0 22 0 chr15 15557436 15557482 -70138272 + (TG)n Simple_repeat Simple_repeat 1 47 0 24 0 0 0 chr15 15557495 15557519 -70138235 + AT_rich Low_complexity Low_complexity 1 24 0 2439 94 3 0 chr15 15557647 15557954 -70137800 + AluSx SINE Alu 1 308 -4 336 239 37 18 chr15 15558868 15558977 -70136777 - LTR33 LTR ERVL -41 480 370 918 234 6 0 chr15 15559009 15559176 -70136578 - MER5A DNA MER1_type -1 188 21 1529 158 94 11 chr15 15559213 15559479 -70136275 + AluJo SINE Alu 12 299 -13 538 266 145 25 chr15 15559495 15559736 -70136018 - LTR33 LTR ERVL -250 271 2 216 249 130 43 chr15 15559832 15559985 -70135769 - MIR SINE MIR -58 204 32 1656 144 23 52 chr15 15560435 15560459 -70135295 + MER7A DNA MER2_type 1 24 -3014 2518 72 3 0 chr15 15560459 15560766 -70134988 - AluSp SINE Alu -5 308 1 1656 144 23 52 chr15 15560766 15560990 -70134764 + MER7A DNA MER2_type 24 240 -2798 2323 61 4 0 chr15 15560990 15561308 -70134446 - AluY SINE Alu 0 319 1 1656 144 23 52 chr15 15561308 15561363 -70134391 + MER7A DNA MER2_type 240 295 -51 1996 133 6 47 chr15 15561371 15561693 -70134061 + MER1B DNA MER1_type 31 339 0 300 208 0 0 chr15 15561694 15561747 -70134007 + MER7A DNA MER2_type 294 346 0 1816 129 116 6 chr15 15562070 15562381 -70133373 + MER47A DNA MER2_type 20 364 -2 2410 81 0 0 chr15 15563355 15563653 -70132101 + AluSc SINE Alu 1 298 -11 4247 187 42 57 chr15 15564128 15565296 -70130458 - L1MB8 LINE L1 -1 6177 4993 2443 67 3 7 chr15 15565296 15565596 -70130158 - AluY SINE Alu -12 299 1 4247 187 42 57 chr15 15565596 15566016 -70129738 - L1MB8 LINE L1 -1185 4993 4615 1449 223 3 26 chr15 15566016 15566325 -70129429 - AluJo SINE Alu -10 302 1 4247 187 42 57 chr15 15566325 15566450 -70129304 - L1MB8 LINE L1 -1563 4615 4490 261 57 0 0 chr15 15566459 15566494 -70129260 + (A)n Simple_repeat Simple_repeat 1 35 0 2082 119 11 0 chr15 15566510 15566795 -70128959 + AluSx SINE Alu 2 289 -23 4443 204 71 40 chr15 15566810 15567348 -70128406 + L1M4 LINE L1 2489 3009 -3137 2009 138 6 10 chr15 15567348 15567660 -70128094 + AluSq SINE Alu 1 311 -2 2126 100 0 37 chr15 15567663 15567963 -70127791 + AluSg SINE Alu 2 290 -20 4443 204 71 40 chr15 15567963 15568020 -70127734 + L1M4 LINE L1 3010 3064 -3082 2441 68 3 0 chr15 15568020 15568313 -70127441 + AluY SINE Alu 3 296 -15 4443 204 71 40 chr15 15568313 15568735 -70127019 + L1M4 LINE L1 3064 3471 -2675 911 165 0 0 chr15 15568735 15568868 -70126886 + FLAM_C SINE Alu 1 133 0 4443 204 71 40 chr15 15568868 15569205 -70126549 + L1M4 LINE L1 3471 3891 -2255 1848 153 3 20 chr15 15569211 15569512 -70126242 - AluJo SINE Alu -16 296 1 618 259 82 26 chr15 15569512 15569880 -70125874 - L1MEc LINE L1 -4127 2269 1878 344 320 8 0 chr15 15570006 15570134 -70125620 - L1MEc LINE L1 -4576 1820 1692 1439 115 99 12 chr15 15570137 15570389 -70125365 + LTR65 LTR ERV1 391 664 -5 2388 98 3 0 chr15 15570441 15570746 -70125008 + AluSq SINE Alu 1 306 -7 1026 113 0 0 chr15 15570753 15570886 -70124868 + AluSg/x SINE Alu 144 276 -34 186 43 0 0 chr15 15570890 15570913 -70124841 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 273 277 160 0 chr15 15570913 15571007 -70124747 + L2 LINE L2 3162 3270 -2 2370 110 51 25 chr15 15571007 15571362 -70124392 + THE1B LTR MaLR 1 364 0 7163 114 23 39 chr15 15571362 15572770 -70122984 + THE1B-int LTR MaLR 1 1329 -322 2464 57 7 3 chr15 15572934 15573231 -70122523 + AluY SINE Alu 1 298 -13 446 255 43 12 chr15 15573489 15573650 -70122104 - L1ME4a LINE L1 0 6121 5956 424 228 73 37 chr15 15573660 15573796 -70121958 - L2 LINE L2 -12 3301 3161 314 202 42 84 chr15 15573824 15573943 -70121811 - L1ME4a LINE L1 -172 5949 5836 272 366 35 53 chr15 15574100 15574299 -70121455 - L2 LINE L2 -225 3047 2846 2315 104 3 0 chr15 15574299 15574597 -70121157 + AluSx SINE Alu 1 299 -13 2273 103 0 10 chr15 15574597 15574909 -70120845 + AluSq SINE Alu 1 309 -4 272 366 35 53 chr15 15574909 15574935 -70120819 - L2 LINE L2 -424 2848 2825 2327 91 7 0 chr15 15576057 15576366 -70119388 - AluSp SINE Alu -2 311 1 2120 133 0 7 chr15 15576374 15576682 -70119072 - AluSx SINE Alu -6 306 1 343 357 13 26 chr15 15577027 15577181 -70118573 + MIR3 SINE MIR 51 202 -6 719 193 25 97 chr15 15577620 15577788 -70117966 - Charlie1 DNA MER1_type -1 2760 2612 2030 127 23 3 chr15 15577788 15578088 -70117666 + AluSq SINE Alu 1 306 -7 719 193 25 97 chr15 15578088 15578157 -70117597 - Charlie1 DNA MER1_type -149 2612 2540 428 228 13 0 chr15 15578157 15578236 -70117518 + MER2 DNA MER2_type 2 81 -264 1185 176 105 40 chr15 15578348 15578472 -70117282 - Charlie1 DNA MER1_type -223 2538 2424 1805 209 118 32 chr15 15578472 15578937 -70116817 - MLT1D LTR MaLR 0 505 1 1185 176 105 40 chr15 15578937 15579135 -70116619 - Charlie1 DNA MER1_type -337 2424 2195 1220 112 0 0 chr15 15579145 15579314 -70116440 + LTR26B LTR ERV1 1 169 -362 2395 90 10 0 chr15 15579316 15579616 -70116138 - AluSx SINE Alu -9 303 1 1025 121 0 34 chr15 15579616 15579765 -70115989 - AluSq/x SINE Alu -168 144 1 2241 124 87 3 chr15 15579777 15580132 -70115622 + LTR26B LTR ERV1 147 531 0 1442 194 39 0 chr15 15580139 15580420 -70115334 - Charlie1 DNA MER1_type -584 2177 1886 1146 173 97 59 chr15 15580420 15580914 -70114840 + MER34B LTR ERV1 1 565 0 969 132 123 174 chr15 15580914 15581006 -70114748 - Charlie1 DNA MER1_type -874 1887 1791 2622 42 3 0 chr15 15581006 15581315 -70114439 - AluY SINE Alu -1 310 1 2318 84 0 3 chr15 15581315 15581614 -70114140 - AluY SINE Alu -13 298 1 969 132 123 174 chr15 15581614 15581691 -70114063 - Charlie1 DNA MER1_type -969 1792 1713 2412 91 3 0 chr15 15581691 15582000 -70113754 - AluSq SINE Alu -3 310 1 969 132 123 174 chr15 15582000 15582172 -70113582 - Charlie1 DNA MER1_type -1048 1713 1562 3217 214 85 24 chr15 15582189 15582424 -70113330 - Charlie1 DNA MER1_type -1339 1422 1203 2087 123 7 20 chr15 15582424 15582726 -70113028 - AluSx SINE Alu -14 298 1 3217 214 85 24 chr15 15582726 15583279 -70112475 - Charlie1 DNA MER1_type -1558 1203 586 377 182 26 0 chr15 15583456 15583533 -70112221 + Tigger5 DNA MER2_type 2245 2323 0 661 217 11 33 chr15 15583946 15584126 -70111628 - MER104 DNA Tc2 -4 176 1 2080 130 0 34 chr15 15584169 15584203 -70111551 - AluSx SINE Alu 0 312 278 219 69 0 0 chr15 15584203 15584232 -70111522 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2080 130 0 34 chr15 15584232 15584520 -70111234 - AluSx SINE Alu -34 278 1 611 349 24 8 chr15 15584579 15584831 -70110923 - MIR SINE MIR 0 262 7 584 179 98 0 chr15 15585491 15585603 -70110151 - Charlie1b DNA MER1_type 0 523 401 2626 82 14 11 chr15 15585606 15585960 -70109794 + L1PA14 LINE L1 5804 6158 -3 1713 101 18 50 chr15 15586012 15586156 -70109598 - MER50 LTR ERV1 -23 711 579 2050 119 44 0 chr15 15586156 15586449 -70109305 + AluSq SINE Alu 1 306 -7 1713 101 18 50 chr15 15586449 15586582 -70109172 - MER50 LTR ERV1 -155 579 443 4643 113 188 89 chr15 15586586 15587877 -70107877 + pTR5 LTR ERV1 742 2295 -143 2136 141 70 27 chr15 15587891 15588303 -70107451 - MER50 LTR ERV1 -295 439 10 1648 173 16 90 chr15 15588637 15589081 -70106673 - Charlie1b DNA MER1_type -112 411 1 3148 133 9 11 chr15 15589199 15589412 -70106342 - L1MB3 LINE L1 -7 6176 5964 1738 141 10 35 chr15 15589412 15589724 -70106030 - AluJo SINE Alu -8 304 1 3148 133 9 11 chr15 15589724 15590036 -70105718 - L1MB3 LINE L1 -219 5964 5652 558 152 0 0 chr15 15590076 15590168 -70105586 - L1MB3 LINE L1 -519 5661 5570 180 0 0 0 chr15 15590238 15590258 -70105496 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 2215 109 6 3 chr15 15590523 15590834 -70104920 + AluSx SINE Alu 1 312 0 351 0 0 0 chr15 15591817 15591856 -70103898 + (CA)n Simple_repeat Simple_repeat 1 39 0 2211 102 7 0 chr15 15592022 15592317 -70103437 - AluSx SINE Alu -15 297 1 234 257 0 14 chr15 15592671 15592741 -70103013 + CT-rich Low_complexity Low_complexity 2 70 0 2072 231 134 30 chr15 15592801 15593497 -70102257 + LTR50 LTR ERVL 4 771 -24 2437 66 3 7 chr15 15593546 15593849 -70101905 - AluSp SINE Alu -11 302 1 340 233 173 55 chr15 15594975 15595177 -70100577 - L1ME LINE L1 -372 5749 5524 2116 112 0 14 chr15 15595294 15595614 -70100140 + AluSx SINE Alu 1 316 0 204 40 0 0 chr15 15596209 15596234 -70099520 + (CAAAAA)n Simple_repeat Simple_repeat 5 29 0 239 224 165 12 chr15 15596954 15597039 -70098715 + L1MDa LINE L1 1763 1860 -4680 22 0 0 0 chr15 15598605 15598627 -70097127 + AT_rich Low_complexity Low_complexity 1 22 0 258 220 85 0 chr15 15598706 15598765 -70096989 - MER91 DNA MER1_type 0 140 77 1164 166 50 55 chr15 15598939 15599258 -70096496 - MER33 DNA MER1_type -16 308 1 419 284 62 0 chr15 15599360 15599536 -70096218 + L1ME LINE L1 5387 5581 -540 249 209 0 0 chr15 15599669 15599736 -70096018 + (TA)n Simple_repeat Simple_repeat 2 68 0 335 266 57 8 chr15 15600734 15600858 -70094896 + LTR67 LTR ERVL 425 554 -3 239 247 130 0 chr15 15601234 15601311 -70094443 - L3 LINE CR1 -162 1415 1329 1214 316 116 30 chr15 15601325 15601482 -70094272 - L3 LINE CR1 -785 792 650 2359 93 0 3 chr15 15601482 15601783 -70093971 + AluSg SINE Alu 1 300 -10 1214 316 116 30 chr15 15601783 15602248 -70093506 - L3 LINE CR1 -927 650 117 1934 161 0 0 chr15 15602375 15602661 -70093093 - AluJo SINE Alu -24 288 3 395 247 105 40 chr15 15602741 15602988 -70092766 - L1ME4a LINE L1 -4 6117 5855 2314 91 7 0 chr15 15603018 15603315 -70092439 - AluSq SINE Alu -14 299 1 306 306 110 58 chr15 15603583 15603756 -70091998 - MIR SINE MIR -71 191 10 1944 95 7 3 chr15 15604038 15604321 -70091433 + L1PB2 LINE L1 5865 6148 -3 1278 116 0 0 chr15 15604489 15604670 -70091084 - AluSg/x SINE Alu -11 301 121 462 286 125 55 chr15 15704675 15705200 -69990554 - L1M4 LINE L1 -1205 3815 1203 1806 147 0 15 chr15 15705297 15705569 -69990185 + AluSg SINE Alu 3 270 -40 245 313 0 21 chr15 15705718 15705814 -69989940 + MIR SINE MIR 102 195 -67 180 0 0 0 chr15 15705820 15705840 -69989914 + (T)n Simple_repeat Simple_repeat 1 20 0 283 341 22 0 chr15 15707531 15707622 -69988132 + MIR3 SINE MIR 109 201 -7 191 310 17 0 chr15 15707763 15707821 -69987933 + MIR SINE MIR 32 90 -118 2262 109 0 3 chr15 15708506 15708810 -69986944 + AluY SINE Alu 1 303 -8 528 144 31 21 chr15 15708810 15708907 -69986847 - U6 snRNA snRNA -8 99 2 1795 163 3 10 chr15 15708967 15709267 -69986487 + AluJb SINE Alu 1 298 -14 2132 119 16 23 chr15 15709303 15709613 -69986141 - AluJb SINE Alu -4 308 1 413 284 84 26 chr15 15709721 15709876 -69985878 - MIR3 SINE MIR -31 177 14 1614 131 142 4 chr15 15712728 15713002 -69982752 - AluJb SINE Alu 0 312 1 571 180 99 0 chr15 15714005 15714149 -69981605 - MIR SINE MIR -10 252 93 373 261 23 39 chr15 15714708 15714838 -69980916 - MER94 DNA DNA 0 134 7 1172 200 5 9 chr15 15720037 15720252 -69975502 - AluJb SINE Alu -98 214 1 2269 105 0 10 chr15 15720272 15720577 -69975177 - AluSc SINE Alu -7 302 1 430 255 9 19 chr15 15720582 15720688 -69975066 - MIR SINE MIR -110 152 48 2292 101 0 7 chr15 15723160 15723468 -69972286 - AluSq SINE Alu -5 308 3 485 250 75 118 chr15 15723862 15724221 -69971533 - L1ME3A LINE L1 -169 6001 5659 1205 174 53 0 chr15 15724221 15724428 -69971326 - MER20 DNA MER1_type 0 219 2 485 250 75 118 chr15 15724428 15724468 -69971286 - L1ME3A LINE L1 -511 5659 5619 897 163 13 26 chr15 15724725 15724933 -69970821 - AluJb SINE Alu 0 338 133 261 271 28 55 chr15 15725033 15725214 -69970540 + C-rich Low_complexity Low_complexity 5 180 0 1311 223 11 14 chr15 15725569 15725856 -69969898 - AluSg SINE Alu -14 286 1 2372 65 0 13 chr15 15725863 15726173 -69969581 - AluY SINE Alu -5 306 1 1423 224 0 14 chr15 15726173 15726459 -69969295 - AluJo SINE Alu -30 282 1 757 216 0 0 chr15 15726465 15726590 -69969164 - FLAM_C SINE Alu -7 126 2 1886 162 3 13 chr15 15726643 15726952 -69968802 - AluJb SINE Alu -6 306 1 2114 114 41 0 chr15 15727915 15728205 -69967549 + AluSx SINE Alu 1 302 -10 1992 140 3 0 chr15 15731088 15731422 -69964332 + AluSq SINE Alu 1 313 0 2328 119 0 16 chr15 15731978 15732115 -69963639 + AluSq SINE Alu 1 139 -174 2271 108 0 25 chr15 15732115 15732431 -69963323 + AluSq SINE Alu 1 308 -5 2328 119 0 16 chr15 15732431 15732611 -69963143 + AluSq SINE Alu 139 313 0 267 281 0 0 chr15 15732615 15732704 -69963050 + L1MC4 LINE L1 6614 6702 -1340 330 330 10 0 chr15 15732705 15732808 -69962946 + (CATATA)n Simple_repeat Simple_repeat 6 109 0 294 179 0 0 chr15 15732808 15732864 -69962890 + (TG)n Simple_repeat Simple_repeat 2 57 0 1232 252 38 64 chr15 15733070 15733156 -69962598 - L1MC/D LINE L1 -2051 5757 5670 1628 167 6 62 chr15 15733156 15733480 -69962274 + AluJo SINE Alu 1 306 -6 1232 252 38 64 chr15 15733480 15733540 -69962214 - L1MC/D LINE L1 -2138 5670 5610 2434 81 0 0 chr15 15733540 15733837 -69961917 + AluY SINE Alu 1 297 -14 1232 252 38 64 chr15 15733837 15734113 -69961641 - L1MC/D LINE L1 -2198 5610 5345 707 217 24 24 chr15 15734119 15734285 -69961469 - FRAM SINE Alu 0 166 1 1035 124 12 6 chr15 15734414 15734583 -69961171 - L1MB5 LINE L1 0 6174 6005 544 29 0 0 chr15 15734583 15734652 -69961102 + MER41A LTR ERV1 400 468 -86 1538 152 0 0 chr15 15734668 15734925 -69960829 - L1MB5 LINE L1 -156 6018 5762 1789 164 37 17 chr15 15734935 15735234 -69960520 - AluJo SINE Alu -7 305 1 1650 151 13 51 chr15 15735267 15735578 -69960176 - AluJo SINE Alu 0 312 14 362 248 48 29 chr15 15737505 15737610 -69958144 - MIR SINE MIR 0 262 156 1092 223 103 13 chr15 15737610 15737910 -69957844 + MER46C DNA MER2_type 1 327 -11 646 247 135 46 chr15 15737912 15738378 -69957376 - MLT1F LTR MaLR -1 541 1 370 280 160 8 chr15 15738405 15738530 -69957224 - MIR SINE MIR -118 144 1 399 121 0 52 chr15 15738651 15738744 -69957010 - L1MB2 LINE L1 -16 6167 6068 297 221 45 162 chr15 15741649 15741803 -69953951 + MIR SINE MIR 34 169 -93 210 284 30 15 chr15 15742796 15742863 -69952891 + GA-rich Low_complexity Low_complexity 5 72 0 1836 157 26 26 chr15 15743619 15743925 -69951829 - AluJb SINE Alu -6 306 1 760 150 0 17 chr15 15744902 15745022 -69950732 + AluJo SINE Alu 19 136 -176 2221 130 0 3 chr15 15747862 15748161 -69947593 + AluSx SINE Alu 1 298 -14 676 211 27 0 chr15 15749267 15749414 -69946340 + MIR3 SINE MIR 33 183 -25 1934 169 0 0 chr15 15749429 15749725 -69946029 + AluJo SINE Alu 1 296 -16 1412 172 3 52 chr15 15756339 15756630 -69939124 - AluY SINE Alu -7 304 28 1133 87 0 0 chr15 15756843 15756981 -69938773 - AluY SINE Alu -173 138 1 2186 102 17 0 chr15 15757103 15757398 -69938356 + AluSx SINE Alu 1 300 -12 1289 117 16 11 chr15 15758260 15758448 -69937306 + AluSq SINE Alu 109 297 -16 2226 111 3 0 chr15 15758709 15759007 -69936747 - AluSp SINE Alu -14 299 1 207 0 0 0 chr15 15759797 15759820 -69935934 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 14883 31 0 0 chr15 15759882 15762388 -69933366 - L1PA3 LINE L1 0 6155 3648 23646 57 41 44 chr15 15762528 15765809 -69929945 - L1PA3 LINE L1 -2857 3289 20 25 51 0 0 chr15 15766434 15766473 -69929281 + GC_rich Low_complexity Low_complexity 1 39 0 2193 119 0 6 chr15 15768768 15769079 -69926675 + AluSx SINE Alu 1 309 -3 1818 114 99 4 chr15 15769226 15769498 -69926256 + AluSq SINE Alu 2 299 -14 1832 147 7 27 chr15 15769990 15770283 -69925471 - AluJb SINE Alu -25 287 1 2020 138 10 0 chr15 15770434 15770723 -69925031 + AluJb SINE Alu 3 294 -18 2021 132 56 0 chr15 15770976 15771295 -69924459 - MER1B DNA MER1_type 0 337 1 816 137 0 0 chr15 15771812 15771936 -69923818 + FRAM SINE Alu 38 161 -15 1811 125 55 14 chr15 15772152 15772441 -69923313 + AluSx SINE Alu 1 301 -11 580 198 62 62 chr15 15773312 15773424 -69922330 - MER104 DNA Tc2 -1721 177 63 2146 84 0 0 chr15 15773424 15773686 -69922068 + AluSc SINE Alu 35 296 -13 580 198 62 62 chr15 15773686 15773735 -69922019 - MER104 DNA Tc2 -1834 64 16 1411 181 58 29 chr15 15773792 15774069 -69921685 + AluJb SINE Alu 2 286 -26 2446 84 13 0 chr15 15774374 15774683 -69921071 + AluSp SINE Alu 1 313 0 447 287 13 7 chr15 15775687 15775837 -69919917 - MIR SINE MIR -15 247 97 2239 87 3 48 chr15 15776223 15776533 -69919221 + AluSg SINE Alu 1 296 -14 261 169 0 0 chr15 15777028 15777087 -69918667 + T-rich Low_complexity Low_complexity 1 59 0 1723 164 16 36 chr15 15777310 15777614 -69918140 + AluSx SINE Alu 2 299 -13 1947 133 7 31 chr15 15777781 15778075 -69917679 + AluSx SINE Alu 1 287 -25 264 30 0 0 chr15 15778075 15778108 -69917646 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 1387 229 52 43 chr15 15779246 15779709 -69916045 + MLT1C LTR MaLR 1 467 0 681 234 0 58 chr15 15779802 15779973 -69915781 + AluJo SINE Alu 127 287 -25 1751 181 27 0 chr15 15779984 15780282 -69915472 + AluJb SINE Alu 5 310 -2 1601 208 103 40 chr15 15780304 15780513 -69915241 - L2 LINE L2 -55 3258 3063 2051 100 6 56 chr15 15780513 15780832 -69914922 - AluSx SINE Alu -9 303 1 1601 208 103 40 chr15 15780832 15781392 -69914362 - L2 LINE L2 -250 3063 2457 1546 123 25 0 chr15 15782952 15783188 -69912566 + AluSx SINE Alu 1 242 -70 811 201 52 0 chr15 15783355 15783509 -69912245 + FRAM SINE Alu 1 161 -15 420 313 50 6 chr15 15783888 15784067 -69911687 - L3 LINE CR1 -9 1568 1382 365 214 0 87 chr15 15784204 15784307 -69911447 - MIR SINE MIR -122 140 47 778 213 33 16 chr15 15784633 15784816 -69910938 + L1ME3 LINE L1 5967 6152 -10 791 194 32 11 chr15 15785100 15785286 -69910468 + L1MB7 LINE L1 5929 6118 -66 1008 119 7 13 chr15 15785286 15785437 -69910317 + AluSq/x SINE Alu 1 150 -163 396 0 0 0 chr15 15785768 15785812 -69909942 + (CA)n Simple_repeat Simple_repeat 1 44 0 734 182 8 0 chr15 15786129 15786250 -69909504 + FLAM_C SINE Alu 2 123 -20 1470 160 0 35 chr15 15786276 15786532 -69909222 + AluJb SINE Alu 11 257 -55 2123 108 0 0 chr15 15786619 15786896 -69908858 + AluYa5 SINE Alu 1 277 -34 236 291 12 12 chr15 15787059 15787145 -69908609 - AluS SINE Alu -206 97 12 203 191 0 48 chr15 15787505 15787547 -69908207 + MER5A DNA MER1_type 65 104 -85 1367 107 93 0 chr15 15787578 15787783 -69907971 + AluSq SINE Alu 1 224 -89 198 233 0 0 chr15 15787907 15787967 -69907787 + CT-rich Low_complexity Low_complexity 1 60 0 396 103 0 52 chr15 15787996 15788054 -69907700 - LTR8 LTR ERV1 -88 603 549 1952 132 7 7 chr15 15788063 15788350 -69907404 - AluSx SINE Alu -25 287 1 333 237 52 21 chr15 15788457 15788554 -69907200 - L2 LINE L2 -5 3308 3209 1232 154 0 10 chr15 15788655 15788850 -69906904 - AluJo SINE Alu -25 287 95 193 250 19 0 chr15 15788850 15788902 -69906852 + L2 LINE L2 2339 2391 -923 235 156 89 0 chr15 15789557 15789602 -69906152 + L2 LINE L2 3262 3310 -3 * 535 246 78 28 chr15 15789600 15789691 -69906063 - MIR SINE MIR -34 228 143 237 83 0 0 chr15 15789691 15789727 -69906027 + (CAA)n Simple_repeat Simple_repeat 2 37 0 535 246 78 28 chr15 15789727 15789814 -69905940 - MIR SINE MIR -119 143 41 431 295 0 8 chr15 15790069 15790191 -69905563 + MIR3 SINE MIR 58 178 -30 718 194 0 0 chr15 15790200 15790334 -69905420 + FRAM SINE Alu 40 173 -3 2029 140 3 7 chr15 15790550 15790850 -69904904 + AluSx SINE Alu 1 299 -13 2214 91 7 19 chr15 15790853 15791162 -69904592 + AluSx SINE Alu 8 312 0 327 248 53 35 chr15 15791401 15791514 -69904240 + MIR3 SINE MIR 87 201 -7 2069 118 7 20 chr15 15792022 15792326 -69903428 + AluSx SINE Alu 1 300 -12 462 18 0 0 chr15 15792326 15792381 -69903373 + (TA)n Simple_repeat Simple_repeat 2 56 0 831 191 51 0 chr15 15792475 15792632 -69903122 + FRAM SINE Alu 1 164 -12 439 319 48 11 chr15 15793008 15793196 -69902558 - L3 LINE CR1 -9 1568 1374 743 188 32 11 chr15 15793691 15793877 -69901877 + L1MB7 LINE L1 5929 6118 -66 2443 82 10 0 chr15 15793877 15794181 -69901573 + AluSq SINE Alu 1 307 -6 306 256 0 39 chr15 15794304 15794382 -69901372 + MER5A DNA MER1_type 2 76 -113 22 0 0 0 chr15 15794397 15794419 -69901335 + AT_rich Low_complexity Low_complexity 1 22 0 1670 88 0 0 chr15 15794426 15794631 -69901123 + AluSg SINE Alu 1 205 -105 269 186 57 43 chr15 15794781 15794851 -69900903 + L1ME3 LINE L1 6004 6074 -88 981 252 19 0 chr15 15794883 15795097 -69900657 + MER82 DNA MER2_type 436 653 0 282 172 31 0 chr15 15795234 15795298 -69900456 - MLT1J2 LTR MaLR -316 134 69 1972 154 3 3 chr15 15795397 15795689 -69900065 + AluSx SINE Alu 1 292 -20 668 115 0 0 chr15 15795700 15795804 -69899950 - AluSp/q SINE Alu -4 309 206 189 171 0 0 chr15 15796046 15796081 -69899673 + MIR SINE MIR 110 144 -118 2354 88 7 3 chr15 15796081 15796386 -69899368 + AluSc SINE Alu 1 306 -3 2070 112 16 35 chr15 15796386 15796698 -69899056 + AluSx SINE Alu 5 310 -2 375 256 51 34 chr15 15796930 15797047 -69898707 + MIR3 SINE MIR 83 201 -7 297 0 0 0 chr15 15797603 15797636 -69898118 + (CTG)n Simple_repeat Simple_repeat 1 33 0 905 218 86 25 chr15 15798945 15799188 -69896566 + MIR SINE MIR 3 260 -2 539 260 202 36 chr15 15800952 15801175 -69894579 + MIR SINE MIR 3 262 0 474 254 42 68 chr15 15801304 15801499 -69894255 + MIR3 SINE MIR 20 212 -50 284 204 0 19 chr15 15801466 15801520 -69894234 - L2 LINE L2 -19 3253 3201 * 597 173 0 0 chr15 15802519 15802623 -69893131 - U13 snRNA snRNA 0 104 1 2227 106 3 19 chr15 15802659 15802970 -69892784 + AluSg SINE Alu 5 310 0 405 0 0 0 chr15 15805266 15805311 -69890443 + (CA)n Simple_repeat Simple_repeat 2 46 0 374 261 22 0 chr15 15805574 15805666 -69890088 - MIR3 SINE MIR -17 191 98 1557 153 0 124 chr15 15806099 15806263 -69889491 - AluJo SINE Alu -15 297 195 2201 111 0 16 chr15 15806263 15806570 -69889184 - AluSg SINE Alu -8 302 1 1557 153 0 124 chr15 15806570 15806744 -69889010 - AluJo SINE Alu -117 195 1 391 198 50 40 chr15 15807066 15807167 -69888587 - L2 LINE L2 -8 3264 3163 791 297 36 9 chr15 15807237 15807459 -69888295 + MIR SINE MIR 35 262 0 2298 91 10 0 chr15 15807568 15807864 -69887890 - AluSx SINE Alu -11 301 3 1027 163 0 53 chr15 15807866 15808056 -69887698 + AluJb SINE Alu 115 294 -18 316 129 16 16 chr15 15808061 15808123 -69887631 + AluJ/FLAM SINE Alu 2 63 -239 273 222 0 0 chr15 15808223 15808286 -69887468 + T-rich Low_complexity Low_complexity 1 63 0 230 284 0 15 chr15 15808310 15808377 -69887377 + CT-rich Low_complexity Low_complexity 1 66 0 909 194 30 30 chr15 15808504 15808705 -69887049 - AluSq SINE Alu -74 239 39 222 323 21 21 chr15 15808720 15808816 -69886938 + MIR SINE MIR 45 140 -68 193 286 20 92 chr15 15809533 15809631 -69886123 + L3 LINE CR1 945 1035 -542 517 307 213 31 chr15 15809700 15809987 -69885767 + L3 LINE CR1 1219 1557 -20 1992 131 0 0 chr15 15810157 15810431 -69885323 - AluSx SINE Alu 0 312 39 2273 95 0 0 chr15 15810551 15810867 -69884887 - AluSg SINE Alu 0 316 1 896 148 0 7 chr15 15811033 15811168 -69884586 + AluSg SINE Alu 3 136 -174 1176 136 0 17 chr15 15811504 15811681 -69884073 - AluSq SINE Alu -48 265 92 2141 120 3 3 chr15 15812344 15812643 -69883111 - AluSc SINE Alu -10 299 1 1577 176 4 8 chr15 15813813 15814075 -69881679 - AluSx SINE Alu -51 261 1 2134 147 16 0 chr15 15814201 15814507 -69881247 - AluSx SINE Alu -1 311 1 33 56 0 0 chr15 15814699 15814753 -69881001 + AT_rich Low_complexity Low_complexity 1 54 0 810 103 0 0 chr15 15815016 15815123 -69880631 - U6 snRNA snRNA 0 107 1 382 263 61 0 chr15 15815212 15815326 -69880428 - MIR SINE MIR 0 262 142 2359 91 3 3 chr15 15815332 15815628 -69880126 - AluSq SINE Alu -17 296 1 2439 98 0 0 chr15 15815642 15815949 -69879805 - AluSc SINE Alu -2 307 1 2220 77 3 70 chr15 15816611 15816923 -69878831 - AluSg SINE Alu -19 291 1 340 318 27 7 chr15 15817309 15817457 -69878297 + MIR SINE MIR 97 247 -15 835 160 0 0 chr15 15817869 15817994 -69877760 - FLAM_C SINE Alu -17 126 2 280 140 105 0 chr15 15818046 15818103 -69877651 + HsTC2 DNA Tc2 2 64 -1834 605 128 0 3 chr15 15818103 15818316 -69877438 - AluSc SINE Alu -7 302 35 236 286 80 18 chr15 15818317 15818429 -69877325 + MER104 DNA Tc2 59 177 -3 1056 152 71 41 chr15 15819301 15819498 -69876256 - AluSc SINE Alu -8 301 99 2232 124 0 0 chr15 15820045 15820352 -69875402 + AluSx SINE Alu 1 307 -5 735 177 0 0 chr15 15820537 15820661 -69875093 - FRAM SINE Alu -15 161 38 2486 81 0 0 chr15 15820824 15821133 -69874621 + AluY SINE Alu 1 309 -2 2092 132 56 0 chr15 15821513 15821832 -69873922 + MER1B DNA MER1_type 1 337 0 2022 140 11 0 chr15 15822085 15822370 -69873384 - AluJb SINE Alu -22 290 3 1778 181 0 17 chr15 15822521 15822819 -69872935 + AluJb SINE Alu 1 293 -19 2483 64 0 3 chr15 15823112 15823408 -69872346 + AluY SINE Alu 1 295 -16 1887 113 98 4 chr15 15823623 15823898 -69871856 - AluSq SINE Alu -12 301 1 230 290 19 42 chr15 15824047 15824173 -69871581 + GA-rich Low_complexity Low_complexity 5 212 0 433 329 0 20 chr15 15824195 15824341 -69871413 + G-rich Low_complexity Low_complexity 3 145 0 752 233 67 0 chr15 15824446 15824626 -69871128 - L1M4 LINE L1 -3364 2782 2591 1022 215 0 16 chr15 15824631 15824822 -69870932 - AluJb SINE Alu -7 305 118 2248 113 3 6 chr15 15824932 15825243 -69870511 - AluSx SINE Alu -2 310 1 225 0 0 0 chr15 15826568 15826593 -69869161 + (A)n Simple_repeat Simple_repeat 1 25 0 2306 61 0 0 chr15 15826595 15826900 -69868854 + AluY SINE Alu 3 307 0 205 283 9 38 chr15 15827283 15827389 -69868365 + (CCCCAG)n Simple_repeat Simple_repeat 2 104 0 2300 92 3 3 chr15 15829321 15829615 -69866139 + AluSp SINE Alu 1 294 -19 2290 101 3 7 chr15 15829899 15830196 -69865558 - AluSq SINE Alu -17 296 1 2112 86 18 0 chr15 15830201 15830514 -69865240 - AluSx SINE Alu 0 318 1 925 71 9 0 chr15 15830658 15830771 -69864983 + AluSq/x SINE Alu 22 135 -178 1648 162 6 60 chr15 15830771 15831086 -69864668 + AluJb SINE Alu 1 298 -14 604 48 48 0 chr15 15831201 15831285 -69864469 - AluSx SINE Alu -17 293 206 869 130 0 71 chr15 15831287 15831441 -69864313 - AluSx SINE Alu -169 143 1 2262 66 24 0 chr15 15832237 15832524 -69863230 + AluY SINE Alu 1 294 -17 2249 116 0 3 chr15 15832589 15832890 -69862864 + AluSg SINE Alu 1 300 -10 309 234 75 0 chr15 15834080 15834174 -69861580 - HsTC2 DNA Tc2 0 1898 1798 2067 108 0 0 chr15 15834834 15835102 -69860652 - AluSx SINE Alu -30 282 15 2456 98 0 0 chr15 15835853 15836159 -69859595 + AluSc SINE Alu 1 306 -3 1309 172 134 15 chr15 15836200 15836468 -69859286 + AluJo SINE Alu 1 300 -12 1386 160 143 0 chr15 15836469 15836707 -69859047 + AluJb SINE Alu 24 295 -17 2237 104 0 7 chr15 15836783 15837082 -69858672 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr15 15837630 15837651 -69858103 + AT_rich Low_complexity Low_complexity 1 21 0 638 200 39 39 chr15 15837702 15837882 -69857872 + AluSq SINE Alu 121 300 -13 443 267 127 0 chr15 15837890 15838040 -69857714 + MIR SINE MIR 71 239 -23 186 333 0 64 chr15 15838355 15838433 -69857321 + MER5A DNA MER1_type 95 167 -22 * 216 306 0 32 chr15 15838381 15838443 -69857311 - MER5B DNA MER1_type -104 74 15 504 244 36 65 chr15 15838933 15839101 -69856653 - L2 LINE L2 0 3313 3151 485 225 126 9 chr15 15839105 15839216 -69856538 + FLAM_A SINE Alu 1 124 -9 2638 40 0 0 chr15 15839227 15839524 -69856230 + AluY SINE Alu 1 297 -14 2153 106 0 11 chr15 15839529 15839812 -69855942 + AluSg SINE Alu 1 280 -30 813 130 13 155 chr15 15839857 15839913 -69855841 + L1MB3 LINE L1 5444 5506 -677 2302 78 27 0 chr15 15839913 15840209 -69855545 + AluSp SINE Alu 1 304 -9 813 130 13 155 chr15 15840209 15840327 -69855427 + L1MB3 LINE L1 5506 5639 -544 2118 138 3 10 chr15 15840327 15840639 -69855115 + AluSx SINE Alu 1 310 -2 2146 136 7 3 chr15 15840644 15840953 -69854801 + AluSx SINE Alu 1 310 -2 2265 88 0 0 chr15 15840959 15841265 -69854489 + AluY SINE Alu 1 306 0 813 130 13 155 chr15 15841265 15841314 -69854440 + L1MB3 LINE L1 5594 5648 -535 697 220 105 31 chr15 15841317 15841508 -69854246 - MER6B DNA MER2_type -5 205 1 916 154 24 12 chr15 15841521 15841690 -69854064 + L1MB3 LINE L1 5679 5849 -334 2262 78 7 36 chr15 15841754 15842061 -69853693 + AluSq SINE Alu 1 298 -15 1844 162 3 3 chr15 15842072 15842369 -69853385 + AluJo SINE Alu 14 310 -2 254 176 88 77 chr15 15842369 15842460 -69853294 + L1MC4a LINE L1 5726 5817 -1991 2357 70 0 10 chr15 15842481 15842781 -69852973 - AluY SINE Alu -14 297 1 21 36 0 0 chr15 15842781 15842809 -69852945 + AT_rich Low_complexity Low_complexity 1 28 0 2392 79 3 13 chr15 15842908 15843211 -69852543 + AluY SINE Alu 1 300 -11 228 194 108 43 chr15 15843246 15843339 -69852415 + L1MC4a LINE L1 6074 6172 -1636 2451 74 3 0 chr15 15844182 15844481 -69851273 + AluSp SINE Alu 2 301 -12 2200 126 0 0 chr15 15845242 15845544 -69850210 - AluSq SINE Alu -11 302 1 315 302 40 40 chr15 15845569 15845695 -69850059 - MIR3 SINE MIR -48 160 35 1698 166 3 18 chr15 15845885 15846168 -69849586 + AluJo SINE Alu 15 293 -19 21 0 0 0 chr15 15847665 15847686 -69848068 + AT_rich Low_complexity Low_complexity 1 21 0 2314 103 0 7 chr15 15847698 15848008 -69847746 + AluSp SINE Alu 5 312 -1 2189 110 20 0 chr15 15848126 15848425 -69847329 + AluSg SINE Alu 5 309 -1 888 114 14 57 chr15 15848451 15848591 -69847163 + AluJo SINE Alu 1 134 -178 207 277 0 0 chr15 15848941 15849006 -69846748 + T-rich Low_complexity Low_complexity 1 65 0 2182 87 7 7 chr15 15849534 15849822 -69845932 + AluSq SINE Alu 9 296 -17 349 198 0 6 chr15 15849977 15850049 -69845705 - AluSp SINE Alu -107 196 136 2041 83 69 7 chr15 15851198 15851487 -69844267 - AluSp SINE Alu -6 307 1 507 209 310 6 chr15 15852278 15852436 -69843318 + MER3 DNA MER1_type 4 209 0 3956 164 58 4 chr15 15902970 15904263 -69791491 - L1PA15 LINE L1 -338 5827 4470 2256 163 9 0 chr15 15905040 15905383 -69790371 + MER7A DNA MER2_type 2 345 -1 26 0 0 0 chr15 15905669 15905695 -69790059 + AT_rich Low_complexity Low_complexity 1 26 0 298 0 23 23 chr15 15906119 15906162 -69789592 + (TG)n Simple_repeat Simple_repeat 1 43 0 212 271 0 34 chr15 15906258 15906317 -69789437 + MIR SINE MIR 14 70 -192 5765 21 6 0 chr15 15906430 15907091 -69788663 - L1P LINE L1 -1592 4554 3890 575 56 14 0 chr15 15907084 15907155 -69788599 + L1P LINE L1 3788 3859 -2287 * 1808 125 0 4 chr15 15907873 15908129 -69787625 + AluSx SINE Alu 44 298 -14 24 0 0 0 chr15 15908264 15908288 -69787466 + AT_rich Low_complexity Low_complexity 1 24 0 1318 181 49 29 chr15 15908477 15908858 -69786896 + L1M4 LINE L1 5059 5447 -727 295 357 159 19 chr15 15909221 15909663 -69786091 - L2 LINE L2 -84 3229 2728 233 316 92 0 chr15 15910098 15910196 -69785558 - MIR SINE MIR -30 232 126 180 0 0 0 chr15 15911902 15911922 -69783832 + (T)n Simple_repeat Simple_repeat 1 20 0 2908 229 63 29 chr15 15913806 15916224 -69779530 - L1M4 LINE L1 -1236 4910 2272 1211 206 67 58 chr15 15916237 15916597 -69779157 - L1ME2 LINE L1 -2 6162 5800 243 278 67 0 chr15 15916922 15917012 -69778742 + MIR3 SINE MIR 100 195 -13 231 204 0 0 chr15 15917793 15917842 -69777912 + (CAAAG)n Simple_repeat Simple_repeat 2 50 0 242 260 65 52 chr15 15918380 15918534 -69777220 + L1ME4a LINE L1 5840 5995 -126 438 337 195 21 chr15 15919147 15919664 -69776090 + L3 LINE CR1 968 1574 -3 199 196 43 0 chr15 15921170 15921216 -69774538 - MIR SINE MIR 0 262 215 733 269 60 67 chr15 15921970 15922301 -69773453 + L2 LINE L2 2985 3313 0 510 147 53 11 chr15 15922479 15922574 -69773180 + L1PA15 LINE L1 6059 6157 -8 848 214 0 0 chr15 15922917 15923076 -69772678 + FRAM SINE Alu 1 158 -18 3174 228 43 52 chr15 15923556 15924889 -69770865 - L1ME1 LINE L1 -23 6423 5088 627 301 27 35 chr15 15925178 15925437 -69770317 + MIR SINE MIR 2 258 -4 621 260 128 23 chr15 15926345 15926787 -69768967 + LTR33 LTR ERVL 1 521 0 218 200 55 36 chr15 15926860 15926915 -69768839 - MIR SINE MIR -12 250 195 637 235 86 6 chr15 15926988 15927150 -69768604 - MIR SINE MIR -67 195 21 254 212 47 12 chr15 15928284 15928369 -69767385 - L1ME1 LINE L1 -4333 2093 2006 305 223 11 0 chr15 15928369 15928463 -69767291 + (CATATA)n Simple_repeat Simple_repeat 5 99 0 816 310 72 34 chr15 15928622 15929067 -69766687 - LTR16B LTR ERVL -2 462 1 355 307 104 12 chr15 15930865 15931028 -69764726 + MIR SINE MIR 12 189 -73 1360 107 22 45 chr15 15931300 15931524 -69764230 - L1MA4 LINE L1 -2 6298 6080 1386 229 10 7 chr15 15932110 15932403 -69763351 - AluJo SINE Alu -18 294 1 1270 307 100 28 chr15 15932459 15933281 -69762473 - L2 LINE L2 -615 2699 1819 22 0 0 0 chr15 15933484 15933506 -69762248 + AT_rich Low_complexity Low_complexity 1 22 0 1616 232 47 7 chr15 15935204 15935626 -69760128 - Charlie4a DNA MER1_type -1 507 69 753 131 0 0 chr15 15935638 15935737 -69760017 - AluSg/x SINE Alu -26 286 188 1624 123 0 0 chr15 15935737 15935956 -69759798 - AluSx SINE Alu -93 219 1 259 252 75 9 chr15 15937609 15937716 -69758038 - MIR3 SINE MIR -10 198 85 2138 179 35 98 chr15 15937815 15938420 -69757334 + MLT1F1 LTR MaLR 1 567 0 304 225 31 78 chr15 15938782 15938911 -69756843 + MIR SINE MIR 119 241 -21 3300 167 49 36 chr15 15938954 15939647 -69756107 - L1MA8 LINE L1 -4 6287 5586 235 192 0 123 chr15 15939659 15939732 -69756022 + MLT1B LTR MaLR 1 64 -326 8281 18 0 1 chr15 15939832 15941185 -69754569 + L1PA2 LINE L1 4803 6154 -1 303 261 91 10 chr15 15941503 15941602 -69754152 - MIR SINE MIR -22 186 79 3315 79 18 20 chr15 15941922 15942367 -69753387 - MLT2A1 LTR ERVL 0 444 1 202 255 135 92 chr15 15942494 15942635 -69753119 - MER5A DNA MER1_type 0 189 43 361 250 40 48 chr15 15942965 15943089 -69752665 + MIR SINE MIR 20 142 -66 306 0 0 0 chr15 15943431 15943465 -69752289 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1645 197 0 7 chr15 15943465 15943743 -69752011 - AluJo SINE Alu -32 280 5 465 143 0 14 chr15 15944371 15944441 -69751313 + Tigger2 DNA MER2_type 1 69 -2649 * 2154 138 128 20 chr15 15944424 15944830 -69750924 + Tigger2 DNA MER2_type 2267 2716 -2 1709 193 5 108 chr15 15944830 15945042 -69750712 - MLT1B LTR MaLR 0 390 244 1806 103 0 0 chr15 15945042 15945276 -69750478 - AluSg/x SINE Alu -8 304 71 1709 193 5 108 chr15 15945276 15945498 -69750256 - MLT1B LTR MaLR -146 244 1 776 180 16 139 chr15 15945744 15945989 -69749765 - MLT1A1 LTR MaLR -34 331 117 182 274 69 49 chr15 15946968 15947070 -69748684 + L2 LINE L2 2956 3059 -213 257 133 44 0 chr15 15947176 15947221 -69748533 + L2 LINE L2 3267 3313 0 574 332 57 8 chr15 15947385 15947629 -69748125 - MIR SINE MIR -6 256 1 563 301 66 0 chr15 15948850 15949033 -69746721 - MIR SINE MIR -66 196 2 855 240 20 10 chr15 15949108 15949312 -69746442 + MIR SINE MIR 57 262 0 235 312 46 37 chr15 15949740 15949849 -69745905 + L2 LINE L2 3150 3259 -13 207 69 0 0 chr15 15949850 15949879 -69745875 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 1933 136 75 36 chr15 15950079 15950440 -69745314 + THE1C LTR MaLR 1 375 0 939 186 12 12 chr15 15951434 15951606 -69744148 + MER5A DNA MER1_type 15 186 -3 238 250 355 0 chr15 15951638 15951762 -69743992 + MER5B DNA MER1_type 8 175 -3 620 226 226 57 chr15 15952187 15952501 -69743253 + MLT1G1 LTR MaLR 222 588 -7 210 156 0 0 chr15 15952709 15952754 -69743000 + (CCCTAG)n Simple_repeat Simple_repeat 2 46 0 266 314 13 56 chr15 15952930 15953055 -69742699 + MIR3 SINE MIR 57 177 -31 180 0 0 0 chr15 15953317 15953337 -69742417 + (CAGCC)n Simple_repeat Simple_repeat 1 20 0 202 347 144 41 chr15 15953697 15953968 -69741786 - L3b LINE CR1 -8 1575 1277 283 226 323 13 chr15 15954422 15954577 -69741177 + LTR41 LTR ERVL 3 205 -568 443 245 106 37 chr15 15954734 15954979 -69740775 + LTR41 LTR ERVL 506 767 -6 435 200 0 0 chr15 15955003 15955083 -69740671 - MIR SINE MIR -70 192 113 182 331 44 52 chr15 15955135 15955271 -69740483 + MIR3 SINE MIR 43 177 -31 198 238 24 0 chr15 15955840 15955882 -69739872 - MIR SINE MIR -18 244 202 301 345 73 44 chr15 15956070 15956345 -69739409 + L2 LINE L2 2834 3116 -197 319 262 124 28 chr15 15956589 15956734 -69739020 + MIR3 SINE MIR 23 181 -27 648 241 50 54 chr15 15956755 15956996 -69738758 - MIR SINE MIR -4 258 19 182 310 23 69 chr15 15957794 15957881 -69737873 + MER5A DNA MER1_type 60 142 -47 21 36 0 0 chr15 15959715 15959743 -69736011 + AT_rich Low_complexity Low_complexity 1 28 0 311 308 33 25 chr15 15960056 15960176 -69735578 + L2 LINE L2 3189 3309 -4 324 0 0 0 chr15 15962539 15962575 -69733179 + (TG)n Simple_repeat Simple_repeat 1 36 0 250 267 122 0 chr15 15962720 15962810 -69732944 + MIR3 SINE MIR 3 103 -105 277 244 24 104 chr15 15962824 15962988 -69732766 - L2 LINE L2 -179 3093 2943 659 329 99 14 chr15 15966019 15966311 -69729443 - MLT1J LTR MaLR -194 317 1 243 274 24 12 chr15 15966635 15966719 -69729035 + L1 LINE L1 4884 4968 -1178 254 346 12 38 chr15 15968121 15968330 -69727424 - MIR SINE MIR -39 223 22 341 300 31 23 chr15 15969089 15969219 -69726535 + L2 LINE L2 3182 3312 -1 890 128 0 8 chr15 15969535 15969668 -69726086 - AluSg/x SINE Alu -9 303 172 4948 173 120 12 chr15 15970384 15971362 -69724392 - Tigger6a DNA MER2_type 0 1083 1 260 182 18 0 chr15 15971660 15971715 -69724039 + L2 LINE L2 2997 3052 -220 297 280 97 0 chr15 15971742 15971835 -69723919 + L2 LINE L2 3169 3270 -2 364 234 0 13 chr15 15973153 15973230 -69722524 - MLT1A1 LTR MaLR -289 76 1 187 202 24 83 chr15 15973249 15973333 -69722421 + L3 LINE CR1 1242 1320 -257 2104 180 38 27 chr15 15973949 15974490 -69721264 - MLT2A2 LTR ERVL -7 547 1 2104 171 113 8 chr15 15974599 15974990 -69720764 - MSTB1 LTR MaLR 0 432 1 440 220 284 0 chr15 15975617 15975758 -69719996 + MER5A DNA MER1_type 8 188 -1 679 264 30 0 chr15 15975767 15975934 -69719820 - MER5B DNA MER1_type -6 172 1 3647 126 34 0 chr15 15976029 15976562 -69719192 - L1PA16 LINE L1 -3 6163 5613 2231 109 0 6 chr15 15977110 15977422 -69718332 + AluY SINE Alu 2 311 0 1147 108 38 0 chr15 15977422 15977579 -69718175 + AluSp SINE Alu 134 296 -17 360 298 0 26 chr15 15977910 15978024 -69717730 + MIR3 SINE MIR 69 179 -29 1415 253 48 5 chr15 15978290 15978709 -69717045 + L2 LINE L2 1829 2265 -1049 443 255 134 19 chr15 15980642 15980799 -69714955 - MER5A DNA MER1_type -14 175 1 189 241 0 0 chr15 15982591 15982645 -69713109 + (CA)n Simple_repeat Simple_repeat 1 54 0 195 326 109 0 chr15 15982647 15982739 -69713015 + L2 LINE L2 3152 3253 -19 2045 149 0 7 chr15 15985851 15986147 -69709607 + AluSx SINE Alu 1 294 -18 1536 168 77 157 chr15 15986403 15986950 -69708804 - MLT1D LTR MaLR 0 505 3 802 307 41 28 chr15 15986950 15987312 -69708442 + LTR16A LTR ERVL 78 444 -6 529 323 49 0 chr15 15987318 15987541 -69708213 + HERV16 LTR ERVL 1 234 -4762 1210 293 79 15 chr15 15987795 15988249 -69707505 + HERV16 LTR ERVL 590 1072 -3924 2469 78 0 3 chr15 15988495 15988804 -69706950 + AluY SINE Alu 1 308 -3 1278 261 35 13 chr15 15988805 15989123 -69706631 + HERV16 LTR ERVL 1713 2037 -2959 8977 187 55 19 chr15 15989137 15991200 -69704554 + L1MA9 LINE L1 3184 5320 -826 30 69 0 0 chr15 15991200 15991258 -69704496 + AT_rich Low_complexity Low_complexity 1 58 0 5335 169 25 6 chr15 15991258 15992242 -69703512 + L1MA9 LINE L1 5305 6308 -4 259 229 0 0 chr15 15992263 15992311 -69703443 + HERV16 LTR ERVL 3237 3284 -1712 * 1828 328 64 30 chr15 15992303 15993956 -69701798 + HERV16 LTR ERVL 3617 5365 -399 1184 266 52 23 chr15 15994134 15994521 -69701233 + LTR16A LTR ERVL 31 428 -22 533 235 105 6 chr15 15994670 15994832 -69700922 + L1ME4a LINE L1 5725 5902 -219 442 257 124 0 chr15 15996269 15996374 -69699380 - L2 LINE L2 -5 3308 3191 471 281 51 22 chr15 15996915 15997093 -69698661 + MIR SINE MIR 7 189 -73 436 240 22 77 chr15 15997931 15998114 -69697640 + MER5B DNA MER1_type 3 175 -3 232 344 165 19 chr15 15999499 15999711 -69696043 - MIR SINE MIR 0 262 20 329 341 36 0 chr15 16000164 16000302 -69695452 + MIR SINE MIR 2 144 -118 1524 54 21 0 chr15 16001077 16001263 -69694491 + MER107 DNA MER1_type 1 190 -7 431 284 45 80 chr15 16001549 16001598 -69694156 - MER5A DNA MER1_type -16 173 124 2195 120 3 0 chr15 16001598 16001897 -69693857 + AluSq SINE Alu 1 300 -13 431 284 45 80 chr15 16001897 16002023 -69693731 - MER5A DNA MER1_type -65 124 4 336 260 161 20 chr15 16003516 16003770 -69691984 - L1ME4a LINE L1 -2 6119 5830 * 381 292 65 77 chr15 16003740 16004162 -69691592 - L1ME4a LINE L1 -768 5378 5106 268 275 0 11 chr15 16004266 16004357 -69691397 - L1MC4a LINE L1 -1748 6060 5971 270 229 86 38 chr15 16005003 16005108 -69690646 - L1P LINE L1 -1134 5012 4903 518 250 123 37 chr15 16005116 16005360 -69690394 - L1ME4a LINE L1 -1303 4843 4579 2575 57 0 0 chr15 16005361 16005659 -69690095 + AluY SINE Alu 1 298 -13 309 234 39 16 chr15 16005674 16005802 -69689952 - L1ME4a LINE L1 -2154 3992 3862 1655 180 0 14 chr15 16006099 16006394 -69689360 + AluJo SINE Alu 1 291 -21 301 274 171 14 chr15 16006910 16007056 -69688698 + MIR SINE MIR 11 179 -83 316 350 43 34 chr15 16007412 16007646 -69688108 - MIR SINE MIR -14 248 13 1144 267 59 53 chr15 16008417 16009166 -69686588 + L1ME3A LINE L1 5131 5883 -287 1883 125 0 32 chr15 16009495 16009776 -69685978 + AluSx SINE Alu 28 299 -13 21 0 0 0 chr15 16010908 16010929 -69684825 + AT_rich Low_complexity Low_complexity 1 21 0 976 200 0 0 chr15 16011450 16011625 -69684129 - FRAM SINE Alu -1 175 1 25 31 0 0 chr15 16012484 16012516 -69683238 + AT_rich Low_complexity Low_complexity 1 32 0 38 22 0 0 chr15 16012801 16012846 -69682908 + AT_rich Low_complexity Low_complexity 1 45 0 729 235 96 62 chr15 16012901 16013072 -69682682 - L1ME4a LINE L1 -119 6002 5838 2090 93 50 0 chr15 16013072 16013351 -69682403 - AluSc SINE Alu -16 293 1 729 235 96 62 chr15 16013351 16013584 -69682170 - L1ME4a LINE L1 -283 5838 5584 218 105 26 0 chr15 16016104 16016142 -69679612 + GA-rich Low_complexity Low_complexity 1 39 0 1495 99 5 19 chr15 16016540 16016751 -69679003 + AluSg/x SINE Alu 94 301 -9 244 288 182 35 chr15 16017390 16017588 -69678166 - L3b LINE CR1 -140 1443 1217 258 95 0 0 chr15 16018368 16018410 -69677344 + (A)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr15 16018543 16018564 -69677190 + AT_rich Low_complexity Low_complexity 1 21 0 648 251 123 17 chr15 16027561 16027796 -69667958 - MIR SINE MIR -2 260 1 1459 106 89 8 chr15 16028155 16028392 -69667362 - L1MA9 LINE L1 -2 6310 6055 228 122 0 0 chr15 16029133 16029174 -69666580 + (TG)n Simple_repeat Simple_repeat 1 41 0 739 204 126 0 chr15 16032372 16032539 -69663215 + MER5A DNA MER1_type 2 189 0 261 0 0 0 chr15 16033718 16033747 -69662007 + (GA)n Simple_repeat Simple_repeat 1 29 0 310 300 149 78 chr15 16033998 16034421 -69661333 - L1M2 LINE L1 -5954 895 443 252 0 0 0 chr15 16035746 16035774 -69659980 + (TG)n Simple_repeat Simple_repeat 2 29 0 2001 135 0 3 chr15 16037506 16037788 -69657966 - AluSx SINE Alu -29 283 3 321 164 18 0 chr15 16038090 16038145 -69657609 + MLT1L LTR MaLR 168 223 -392 321 314 112 12 chr15 16038310 16038479 -69657275 + MLT1L LTR MaLR 423 608 -7 352 293 92 12 chr15 16038518 16038682 -69657072 - L1ME LINE L1 -441 5680 5504 316 364 85 6 chr15 16039393 16039569 -69656185 - MIR3 SINE MIR -5 203 14 2148 136 3 0 chr15 16040198 16040507 -69655247 + AluSx SINE Alu 1 310 -2 210 118 0 0 chr15 16040524 16040558 -69655196 + (T)n Simple_repeat Simple_repeat 1 34 0 309 323 37 37 chr15 16040619 16040780 -69654974 + L3b LINE CR1 1362 1522 -61 322 264 10 32 chr15 16041489 16041790 -69653964 + CT-rich Low_complexity Low_complexity 1 294 0 181 191 21 0 chr15 16041790 16041837 -69653917 + MIR SINE MIR 167 214 -48 1594 241 123 18 chr15 16042098 16042601 -69653153 + MER69 DNA AcHobo 1 556 -670 362 230 75 58 chr15 16042659 16042744 -69653010 + MER69 DNA AcHobo 2350 2432 -94 2091 104 32 4 chr15 16042744 16043022 -69652732 - AluSg SINE Alu -22 288 3 362 230 75 58 chr15 16043022 16043110 -69652644 + MER69 DNA AcHobo 2432 2526 0 267 290 0 0 chr15 16044088 16044150 -69651604 - L2 LINE L2 -208 3064 3003 259 247 0 39 chr15 16044500 16044577 -69651177 + CT-rich Low_complexity Low_complexity 1 74 0 311 216 216 0 chr15 16046031 16046133 -69649621 + MIR3 SINE MIR 85 208 0 409 226 143 42 chr15 16046275 16046443 -69649311 - LTR67 LTR ERVL -8 549 365 432 236 187 8 chr15 16046633 16046756 -69648998 + LTR67 LTR ERVL 74 218 -339 3172 124 2 2 chr15 16046764 16047206 -69648548 + L1PA16 LINE L1 5716 6157 -9 2045 148 60 49 chr15 16047362 16047747 -69648007 + MLT1B LTR MaLR 1 389 -1 399 174 47 200 chr15 16048432 16048530 -69647224 - MER103 DNA DNA -2 164 106 2104 107 18 11 chr15 16048530 16048838 -69646916 + AluSx SINE Alu 1 310 0 399 174 47 200 chr15 16048838 16048928 -69646826 - MER103 DNA DNA -60 106 4 1656 119 97 0 chr15 16048958 16049227 -69646527 + L1MA1 LINE L1 6004 6298 -4 2297 54 21 4 chr15 16049307 16049608 -69646146 - AluY SINE Alu 0 306 1 379 316 92 5 chr15 16050633 16050829 -69644925 + L2 LINE L2 2431 2643 -671 1212 194 80 123 chr15 16050844 16051317 -69644437 + LTR45B LTR ERV1 27 479 -10 482 288 41 6 chr15 16051328 16051498 -69644256 + MIR SINE MIR 80 255 -7 2029 137 9 12 chr15 16052187 16052508 -69643246 - MER7A DNA MER2_type -25 321 4 3041 194 18 32 chr15 16053353 16053915 -69641839 - MLT2B3 LTR ERVL 0 554 1 695 275 45 15 chr15 16054528 16054728 -69641026 + MLT1I LTR MaLR 1 206 -203 1654 70 0 14 chr15 16054755 16054970 -69640784 - AluY SINE Alu 0 311 100 3313 159 51 12 chr15 16056782 16057387 -69638367 + L1MB8 LINE L1 5512 6140 -38 934 234 186 53 chr15 16057397 16057794 -69637960 + MLT1D LTR MaLR 12 582 -44 971 219 73 10 chr15 16058294 16058499 -69637255 + MER20 DNA MER1_type 1 218 -1 203 204 37 19 chr15 16058551 16058605 -69637149 + (TGGA)n Simple_repeat Simple_repeat 2 56 0 471 209 37 107 chr15 16058612 16058799 -69636955 - MER5B DNA MER1_type -4 174 1 359 195 136 160 chr15 16059206 16059316 -69636438 - MER5A DNA MER1_type -6 183 77 2042 98 4 0 chr15 16059316 16059581 -69636173 - AluSp SINE Alu -47 266 1 359 195 136 160 chr15 16059581 16059639 -69636115 - MER5A DNA MER1_type -112 77 19 234 250 217 33 chr15 16060753 16060873 -69634881 - MER5A DNA MER1_type 0 189 48 529 200 200 35 chr15 16060919 16061119 -69634635 - MER102a DNA MER1_type -10 320 88 536 264 62 62 chr15 16061155 16061363 -69634391 - MIR SINE MIR -48 214 7 563 231 19 0 chr15 16061504 16061612 -69634142 + MER81 DNA DNA 1 110 -4 1666 129 61 0 chr15 16061687 16061966 -69633788 - L1MA5 LINE L1 -5 6295 6000 22 0 0 0 chr15 16063408 16063430 -69632324 + AT_rich Low_complexity Low_complexity 1 22 0 1574 254 60 62 chr15 16064071 16064705 -69631049 + L1M3b LINE L1 1224 1856 -5640 994 270 52 84 chr15 16065044 16065507 -69630247 + L1M3b LINE L1 2070 2517 -4979 * 5613 211 33 87 chr15 16065491 16065750 -69630004 + L1M3b LINE L1 2456 2728 -4837 1933 127 51 0 chr15 16065750 16066025 -69629729 + AluSg SINE Alu 1 289 -21 5613 211 33 87 chr15 16066025 16066667 -69629087 + L1M3b LINE L1 2728 3404 -4161 801 194 0 15 chr15 16066667 16066801 -69628953 - FLAM_A SINE Alu -1 132 1 5613 211 33 87 chr15 16066801 16069703 -69626051 + L1M3b LINE L1 3404 5823 -1742 244 229 195 42 chr15 16069804 16069922 -69625832 - MIR3 SINE MIR -72 136 1 322 180 33 0 chr15 16070001 16070062 -69625692 + MER69 DNA AcHobo 1 63 -2463 525 174 6 126 chr15 16070177 16070344 -69625410 + MER69 DNA AcHobo 2380 2526 0 33 67 0 22 chr15 16070375 16070426 -69625328 + AT_rich Low_complexity Low_complexity 1 51 -37 1928 140 31 0 chr15 16070426 16070550 -69625204 + AluSx SINE Alu 1 120 -192 183 42 0 0 chr15 16070550 16070574 -69625180 + (TA)n Simple_repeat Simple_repeat 2 25 0 1928 140 31 0 chr15 16070574 16070735 -69625019 + AluSx SINE Alu 120 295 -17 33 67 0 22 chr15 16070735 16070773 -69624981 + AT_rich Low_complexity Low_complexity 51 88 0 768 280 93 32 chr15 16070796 16071235 -69624519 - HAL1 LINE L1 -44 2463 1998 531 239 51 67 chr15 16071221 16071476 -69624278 - HAL1 LINE L1 -407 2100 1850 * 986 156 25 0 chr15 16075127 16075287 -69620467 + MLT1B LTR MaLR 227 390 0 2868 234 23 13 chr15 16076023 16076711 -69619043 + L1ME1 LINE L1 5457 6151 -15 227 259 0 0 chr15 16077306 16077360 -69618394 + MIR SINE MIR 80 133 -129 300 111 0 0 chr15 16077835 16077880 -69617874 + (TG)n Simple_repeat Simple_repeat 1 45 0 456 221 277 20 chr15 16078168 16078363 -69617391 - MIR SINE MIR -14 248 4 404 333 0 26 chr15 16079710 16079866 -69615888 - MIR SINE MIR -76 186 35 1932 138 98 20 chr15 16081759 16082106 -69613648 - THE1C LTR MaLR 0 375 2 896 267 31 19 chr15 16085802 16086060 -69609694 + MIR SINE MIR 2 262 0 1641 111 0 25 chr15 16086790 16087033 -69608721 - AluSc SINE Alu -72 237 1 1941 141 7 10 chr15 16087068 16087373 -69608381 + AluJb SINE Alu 2 305 -7 303 291 71 16 chr15 16088393 16088520 -69607234 - L2 LINE L2 -2 3270 3137 303 287 47 31 chr15 16088836 16088965 -69606789 + MIR SINE MIR 74 204 -58 2206 105 10 0 chr15 16089709 16090003 -69605751 - AluSc SINE Alu -12 297 1 1773 266 53 2 chr15 16090586 16091134 -69604620 + L2 LINE L2 1431 2006 -1308 521 307 74 39 chr15 16091399 16091669 -69604085 - ERVL LTR ERVL -2832 2822 2541 2341 88 0 3 chr15 16091669 16091963 -69603791 + AluSc SINE Alu 1 293 -16 521 307 74 39 chr15 16091963 16092019 -69603735 - ERVL LTR ERVL -3113 2541 2488 979 331 54 56 chr15 16092131 16093082 -69602672 - ERVL LTR ERVL -3926 1838 890 443 268 62 115 chr15 16093853 16094436 -69601318 - LTR67 LTR ERVL -2 555 4 327 150 0 0 chr15 16095412 16095472 -69600282 + (TG)n Simple_repeat Simple_repeat 1 60 0 460 341 8 0 chr15 16096539 16096665 -69599089 + L2 LINE L2 3146 3272 0 198 284 54 14 chr15 16097091 16097165 -69598589 - MIR3 SINE MIR -47 161 85 2713 120 20 39 chr15 16097208 16097650 -69598104 - MER57B LTR ERV1 0 434 1 22 35 0 0 chr15 16098518 16098547 -69597207 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 16098923 16098945 -69596809 + AT_rich Low_complexity Low_complexity 1 22 0 1631 151 7 0 chr15 16101604 16101876 -69593878 + L1MA9 LINE L1 5341 5614 -677 5658 193 106 30 chr15 16101876 16103063 -69592691 + MER52C LTR ERV1 1 1278 0 1446 162 0 74 chr15 16103076 16103373 -69592381 + AluJo SINE Alu 23 297 -15 2759 164 30 77 chr15 16103374 16104034 -69591720 + L1MA9 LINE L1 5649 6277 -35 1738 24 0 0 chr15 16104624 16104832 -69590922 + L1PA2 LINE L1 5946 6153 -2 373 237 41 21 chr15 16105064 16105161 -69590593 + MER5B DNA MER1_type 80 178 0 219 271 0 0 chr15 16106541 16106589 -69589165 - L2 LINE L2 -8 3264 3217 566 238 20 0 chr15 16106768 16106919 -69588835 + MER103 DNA DNA 11 164 -2 534 219 138 0 chr15 16108144 16108267 -69587487 + MIR SINE MIR 79 218 -44 183 359 0 0 chr15 16108694 16108758 -69586996 + MIR SINE MIR 38 101 -107 * 198 214 0 71 chr15 16108748 16108804 -69586950 + L3 LINE CR1 1506 1557 -20 6358 124 53 16 chr15 16109356 16109545 -69586209 - Tigger3b DNA MER2_type -1886 1142 961 1849 181 0 10 chr15 16109545 16109859 -69585895 + AluJb SINE Alu 1 311 -1 6358 124 53 16 chr15 16109859 16110195 -69585559 - Tigger3b DNA MER2_type -2067 961 639 2179 125 22 33 chr15 16110195 16110563 -69585191 + THE1B LTR MaLR 1 364 0 6358 124 53 16 chr15 16110563 16111134 -69584620 - Tigger3b DNA MER2_type -2389 639 5 219 69 0 0 chr15 16112147 16112176 -69583578 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 240 312 36 5 chr15 16112220 16112317 -69583437 + MIR SINE MIR 46 142 -66 608 269 66 6 chr15 16113135 16113317 -69582437 + MIR SINE MIR 19 211 -51 22 0 0 0 chr15 16114222 16114244 -69581510 + AT_rich Low_complexity Low_complexity 1 22 0 223 270 80 30 chr15 16114320 16114420 -69581334 - L2 LINE L2 0 3313 3209 21 36 0 0 chr15 16114425 16114453 -69581301 + AT_rich Low_complexity Low_complexity 1 28 0 2831 154 41 19 chr15 16114598 16115084 -69580670 + L1MB7 LINE L1 5609 6110 -74 2476 61 0 0 chr15 16115084 16115379 -69580375 + AluY SINE Alu 1 295 -16 2831 154 41 19 chr15 16115379 16115456 -69580298 + L1MB7 LINE L1 6110 6184 0 24 0 0 0 chr15 16115546 16115570 -69580184 + AT_rich Low_complexity Low_complexity 1 24 0 1959 134 3 11 chr15 16116601 16116885 -69578869 + AluSx SINE Alu 1 282 -30 219 36 0 0 chr15 16116890 16116918 -69578836 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 27 0 0 0 chr15 16118051 16118078 -69577676 + AT_rich Low_complexity Low_complexity 1 27 0 305 141 62 47 chr15 16122031 16122095 -69573659 - L2 LINE L2 -69 3244 3180 378 288 44 28 chr15 16122211 16122529 -69573225 - L2 LINE L2 -1756 1558 1153 500 322 141 47 chr15 16123239 16123895 -69571859 - L2 LINE L2 -5 3267 2541 209 255 0 0 chr15 16123970 16124017 -69571737 + L2 LINE L2 3267 3313 0 224 233 0 33 chr15 16124429 16124489 -69571265 + MIR3 SINE MIR 15 72 -136 2038 232 29 50 chr15 16124952 16125646 -69570108 + L1ME4a LINE L1 4118 4796 -1350 28 0 0 0 chr15 16125673 16125701 -69570053 + AT_rich Low_complexity Low_complexity 1 28 0 186 282 167 13 chr15 16125788 16125866 -69569888 + L2 LINE L2 3182 3271 -1 22 0 0 0 chr15 16125984 16126006 -69569748 + AT_rich Low_complexity Low_complexity 1 22 0 742 203 139 25 chr15 16126174 16126376 -69569378 - MIR SINE MIR -3 259 35 2352 95 3 19 chr15 16128539 16128855 -69566899 - AluSq SINE Alu -2 311 1 265 399 68 7 chr15 16129010 16129158 -69566596 + L2 LINE L2 3116 3272 0 2327 130 3 14 chr15 16129618 16129988 -69565766 - MER47A DNA MER2_type 0 366 1 2636 231 31 9 chr15 16130427 16130998 -69564756 - MER21B LTR ERV1 -261 602 19 513 185 0 22 chr15 16131020 16131112 -69564642 - MER21B LTR ERV1 -773 90 1 342 345 144 14 chr15 16131446 16131756 -69563998 - L2 LINE L2 -292 2980 2629 262 367 41 0 chr15 16132807 16132905 -69562849 - MER91A DNA MER1_type -66 130 29 180 0 0 0 chr15 16133276 16133296 -69562458 + (TAGA)n Simple_repeat Simple_repeat 1 20 0 259 85 43 0 chr15 16134147 16134194 -69561560 + GA-rich Low_complexity Low_complexity 3 51 0 286 230 40 70 chr15 16135196 16135296 -69560458 + MIR SINE MIR 92 188 -74 828 151 0 23 chr15 16135313 16135485 -69560269 + L1MA7 LINE L1 6124 6291 0 2088 113 40 0 chr15 16135920 16136221 -69559533 + AluSq SINE Alu 1 313 0 485 280 129 22 chr15 16137663 16138027 -69557727 + L1ME4a LINE L1 5265 5667 -454 263 146 36 0 chr15 16138124 16138179 -69557575 + L1ME4a LINE L1 5860 5916 -205 201 98 39 39 chr15 16138204 16138255 -69557499 + GA-rich Low_complexity Low_complexity 4 54 0 525 16 0 0 chr15 16138267 16138329 -69557425 + (TG)n Simple_repeat Simple_repeat 2 63 0 189 0 0 0 chr15 16138650 16138671 -69557083 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 1060 182 98 42 chr15 16139460 16139767 -69555987 + MER33 DNA MER1_type 1 324 0 365 272 130 54 chr15 16140421 16140605 -69555149 - MLT1J LTR MaLR -202 309 112 276 355 40 7 chr15 16141543 16141695 -69554059 + L2 LINE L2 2894 3050 -222 1883 164 0 0 chr15 16142275 16142561 -69553193 + AluJo SINE Alu 5 290 -22 938 305 79 58 chr15 16143018 16143929 -69551825 - L1MEd LINE L1 -5187 932 3 38 61 0 0 chr15 16144107 16144173 -69551581 + AT_rich Low_complexity Low_complexity 1 66 0 2277 104 3 0 chr15 16144384 16144683 -69551071 - AluSp SINE Alu -13 300 1 1120 63 6 19 chr15 16145004 16145162 -69550592 + L1PA8 LINE L1 6017 6172 0 191 326 130 0 chr15 16145996 16146088 -69549666 + MIR3 SINE MIR 98 201 -7 2303 110 0 0 chr15 16147116 16147415 -69548339 + AluSx SINE Alu 4 302 -10 234 283 22 43 chr15 16147580 16147718 -69548036 - L1ME LINE L1 -458 5663 5529 245 250 50 10 chr15 16147978 16148078 -69547676 - L1ME4a LINE L1 -1 6120 6017 314 268 68 63 chr15 16148170 16148375 -69547379 - L1MC4a LINE L1 -1842 5966 5761 1298 141 163 103 chr15 16149829 16150149 -69545605 - Charlie3 DNA MER1_type 0 2712 1 329 313 11 0 chr15 16150154 16150237 -69545517 - MIR SINE MIR -104 104 23 367 165 0 6 chr15 16150401 16150660 -69545094 + AluJo SINE Alu 1 302 0 798 276 20 0 chr15 16150905 16151101 -69544653 + MIR SINE MIR 53 252 -10 1844 176 31 14 chr15 16151311 16151670 -69544084 - MLT1A1 LTR MaLR 0 365 1 2227 102 3 16 chr15 16151874 16152187 -69543567 - AluSx SINE Alu -3 309 1 23 54 0 0 chr15 16153268 16153305 -69542449 + AT_rich Low_complexity Low_complexity 1 37 0 786 144 0 0 chr15 16153485 16153603 -69542151 + FLAM_C SINE Alu 1 118 -15 21 36 0 0 chr15 16153603 16153631 -69542123 + AT_rich Low_complexity Low_complexity 1 28 0 397 230 103 32 chr15 16154017 16154143 -69541611 + MIR3 SINE MIR 15 149 -59 412 276 9 20 chr15 16154193 16154329 -69541425 + MIR SINE MIR 21 157 -67 245 333 0 10 chr15 16154780 16154879 -69540875 - MER5A DNA MER1_type 0 189 92 1799 160 13 26 chr15 16154887 16155194 -69540560 + AluJb SINE Alu 1 303 -9 182 322 58 23 chr15 16155245 16155332 -69540422 + L2 LINE L2 2602 2691 -623 257 346 39 31 chr15 16155829 16155853 -69539901 + L3 LINE CR1 1434 1456 -121 2822 101 24 14 chr15 16155853 16156277 -69539477 + MSTA LTR MaLR 1 428 0 257 346 39 31 chr15 16156277 16156379 -69539375 + L3 LINE CR1 1456 1561 -16 21 36 0 0 chr15 16156462 16156490 -69539264 + AT_rich Low_complexity Low_complexity 1 28 0 1744 190 54 63 chr15 16156541 16157014 -69538740 + L1ME4a LINE L1 5122 5599 -565 2445 74 3 0 chr15 16157014 16157311 -69538443 - AluSc SINE Alu -6 303 6 1744 190 54 63 chr15 16157311 16157494 -69538260 + L1ME4a LINE L1 5599 5782 -382 341 261 90 30 chr15 16157531 16157665 -69538089 + LTR33 LTR ERVL 106 247 -274 235 301 98 15 chr15 16158274 16158407 -69537347 + LTR33 LTR ERVL 371 514 -7 221 102 41 0 chr15 16158407 16158456 -69537298 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 227 208 78 0 chr15 16158469 16158546 -69537208 + L1MC4 LINE L1 6620 6702 -1340 * 287 179 140 112 chr15 16158518 16158697 -69537057 + L1ME4a LINE L1 5935 6118 -3 1796 132 14 34 chr15 16158699 16158994 -69536760 - AluJb SINE Alu -14 298 10 264 289 92 13 chr15 16159088 16159164 -69536590 + MIR SINE MIR 50 131 -77 643 269 26 118 chr15 16161844 16162167 -69533587 - MER102b DNA MER1_type -1109 319 29 3223 144 31 8 chr15 16162167 16162682 -69533072 + MER1A DNA MER1_type 1 527 0 643 269 26 118 chr15 16162682 16162707 -69533047 - MER102b DNA MER1_type -1399 29 3 1538 165 7 15 chr15 16162881 16163154 -69532600 + AluJo SINE Alu 27 297 -15 449 261 81 31 chr15 16163275 16163436 -69532318 - MIR SINE MIR -41 221 53 2351 79 0 3 chr15 16163445 16163735 -69532019 - AluY SINE Alu -22 289 1 2428 67 3 3 chr15 16164462 16164759 -69530995 - AluY SINE Alu -14 297 1 2240 99 3 0 chr15 16165158 16165450 -69530304 + AluSc SINE Alu 1 293 -16 2219 113 0 23 chr15 16165993 16166295 -69529459 - AluSx SINE Alu -14 298 4 314 61 20 0 chr15 16167044 16167093 -69528661 + (CA)n Simple_repeat Simple_repeat 1 50 0 303 300 176 43 chr15 16167453 16167663 -69528091 - L2 LINE L2 -3 3269 3032 275 323 153 46 chr15 16167636 16167918 -69527836 - L2 LINE L2 -545 2769 2458 * 6015 181 42 19 chr15 16167931 16169496 -69526258 + L1PA15 LINE L1 4079 5708 -457 1704 213 0 7 chr15 16169496 16169797 -69525957 + AluJb SINE Alu 1 299 -13 6015 181 42 19 chr15 16169797 16170252 -69525502 + L1PA15 LINE L1 5708 6151 -14 442 311 39 64 chr15 16170353 16170636 -69525118 - L2 LINE L2 -889 2425 2150 400 258 24 8 chr15 16171129 16171253 -69524501 + LTR67 LTR ERVL 430 555 -2 1906 129 0 50 chr15 16172117 16172459 -69523295 - MER1B DNA MER1_type 0 339 15 2310 109 3 0 chr15 16172499 16172803 -69522951 + AluSq SINE Alu 1 305 -8 1916 125 39 0 chr15 16173319 16173599 -69522155 - AluSx SINE Alu -21 291 1 227 322 33 25 chr15 16174004 16174125 -69521629 + MLT1J LTR MaLR 232 353 -158 235 224 194 20 chr15 16174128 16174226 -69521528 + MLT1L LTR MaLR 500 614 -1 237 261 106 48 chr15 16174229 16174436 -69521318 + HAL1 LINE L1 1241 1459 -1048 5012 129 32 11 chr15 16175440 16176351 -69519403 - Tigger3b DNA MER2_type 0 1231 302 679 132 57 0 chr15 16176355 16176461 -69519293 - Tigger3b DNA MER2_type -1118 113 2 357 271 40 33 chr15 16176689 16176840 -69518914 + Charlie8 DNA MER1_type 38 189 -2228 740 244 50 9 chr15 16176961 16177182 -69518572 - LTR16A1 LTR ERVL -15 442 213 307 191 103 56 chr15 16177210 16177336 -69518418 - LTR16A1 LTR ERVL -325 132 1 341 298 33 0 chr15 16177339 16177460 -69518294 + Charlie8 DNA MER1_type 368 492 -1925 2010 82 0 7 chr15 16177941 16178220 -69517534 - L1PA13 LINE L1 -7 6156 5880 23 33 0 0 chr15 16178296 16178326 -69517428 + AT_rich Low_complexity Low_complexity 1 30 0 280 283 90 6 chr15 16179640 16179806 -69515948 - MER112 DNA MER1_type 0 260 81 21 0 0 0 chr15 16180393 16180414 -69515340 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr15 16180911 16180940 -69514814 + AT_rich Low_complexity Low_complexity 1 29 0 246 155 0 69 chr15 16183475 16183533 -69512221 - MER83 LTR ERV1 -2 446 393 2072 196 144 20 chr15 16183769 16184381 -69511373 + L1MC4 LINE L1 7132 7819 -223 411 217 65 0 chr15 16184398 16184504 -69511250 + L1MC4 LINE L1 7880 7985 -10 228 100 0 0 chr15 16184996 16185036 -69510718 + (TCTG)n Simple_repeat Simple_repeat 2 41 0 306 0 0 0 chr15 16185046 16185080 -69510674 + (CA)n Simple_repeat Simple_repeat 1 34 0 3085 168 39 19 chr15 16185525 16186074 -69509680 - MER6A DNA MER2_type -261 604 41 1632 169 29 16 chr15 16186074 16186382 -69509372 + AluJo SINE Alu 1 312 0 3085 168 39 19 chr15 16186382 16186420 -69509334 - MER6A DNA MER2_type -824 41 5 515 153 10 0 chr15 16187268 16187366 -69508388 + CT-rich Low_complexity Low_complexity 3 101 0 290 330 16 16 chr15 16187699 16187887 -69507867 - HAL1b LINE L1 -625 723 536 244 187 80 133 chr15 16188723 16188873 -69506881 - MER20B DNA MER1_type -609 174 33 9908 184 33 23 chr15 16188928 16191686 -69504068 + L1MA9 LINE L1 2981 5774 -538 333 0 0 0 chr15 16191686 16191723 -69504031 + (CA)n Simple_repeat Simple_repeat 2 38 0 9908 184 33 23 chr15 16191723 16192230 -69503524 + L1MA9 LINE L1 5774 6274 -38 996 215 61 0 chr15 16192368 16192615 -69503139 - L1P LINE L1 -987 5159 4898 * 2980 170 66 5 chr15 16192598 16193204 -69502550 + L1MC3 LINE L1 7133 7775 -10 432 288 99 75 chr15 16193222 16193635 -69502119 + L1ME4a LINE L1 3259 3681 -2465 479 342 60 7 chr15 16193705 16193974 -69501780 + L1ME4a LINE L1 3693 3975 -2171 24 32 0 0 chr15 16194048 16194079 -69501675 + AT_rich Low_complexity Low_complexity 1 31 0 1668 188 62 3 chr15 16194369 16194709 -69501045 + MLT1F1 LTR MaLR 208 567 0 183 343 66 80 chr15 16194867 16195319 -69500435 - L2 LINE L2 -1133 2181 1736 1133 211 153 0 chr15 16196642 16196903 -69498851 - AluJo SINE Alu -1 301 1 27 49 0 0 chr15 16197475 16197516 -69498238 + AT_rich Low_complexity Low_complexity 1 41 0 447 300 64 19 chr15 16199051 16199318 -69496436 + L1ME4a LINE L1 4735 5013 -1133 1298 193 212 37 chr15 16199850 16200255 -69495499 - MLT1D LTR MaLR -8 497 22 467 234 7 43 chr15 16200311 16200452 -69495302 + L1ME4a LINE L1 5691 5826 -295 296 197 30 15 chr15 16200461 16200527 -69495227 - MLT1G LTR MaLR 0 590 524 3222 195 33 8 chr15 16200528 16201199 -69494555 + L1MC4a LINE L1 7121 7808 0 5296 154 25 10 chr15 16201203 16202129 -69493625 + L1MA7 LINE L1 5352 6291 0 605 196 24 54 chr15 16202135 16202303 -69493451 - MLT1G LTR MaLR -39 551 389 1191 185 195 53 chr15 16202405 16202799 -69492955 - MLT1C LTR MaLR 0 467 18 694 273 40 43 chr15 16202848 16203101 -69492653 - MLT1G LTR MaLR -299 291 40 260 262 65 74 chr15 16203167 16203396 -69492358 + L1ME4a LINE L1 5839 6065 -56 1971 133 16 16 chr15 16205502 16205811 -69489943 - AluJo SINE Alu -3 309 1 294 292 115 8 chr15 16206120 16206250 -69489504 - MIR SINE MIR 0 262 119 729 221 64 60 chr15 16206651 16206900 -69488854 - MIR SINE MIR 0 262 13 1646 166 7 42 chr15 16207101 16207408 -69488346 - AluJo SINE Alu -8 304 9 4077 175 28 45 chr15 16207692 16208491 -69487263 + LTR1 LTR ERV1 1 785 0 6281 180 76 35 chr15 16208572 16209265 -69486489 - Charlie1a DNA MER1_type -1309 1452 789 2792 13 0 0 chr15 16209265 16209567 -69486187 + AluY SINE Alu 1 302 -9 6281 180 76 35 chr15 16209567 16210266 -69485488 - Charlie1a DNA MER1_type -1972 789 2 436 187 0 0 chr15 16211210 16211285 -69484469 + MER33 DNA MER1_type 8 82 -242 194 231 256 34 chr15 16211845 16211962 -69483792 - MIR SINE MIR 0 262 120 2035 119 3 7 chr15 16212576 16212862 -69482892 - AluJb SINE Alu -27 285 1 2291 95 0 0 chr15 16212864 16213158 -69482596 - AluSx SINE Alu -18 294 1 270 95 0 24 chr15 16213903 16213945 -69481809 + FLAM SINE Alu 86 126 -7 1266 253 47 49 chr15 16213949 16214468 -69481286 + L1ME1 LINE L1 4498 5016 -1150 1962 138 28 0 chr15 16214468 16214757 -69480997 + AluSx SINE Alu 1 297 -15 1266 253 47 49 chr15 16214757 16214897 -69480857 + L1ME1 LINE L1 5016 6148 -18 1239 160 0 5 chr15 16215304 16215498 -69480256 - AluJo SINE Alu -33 279 87 1546 134 150 13 chr15 16215815 16216171 -69479583 + MSTA LTR MaLR 1 428 0 491 112 0 37 chr15 16216388 16216495 -69479259 + (GGGA)n Simple_repeat Simple_repeat 2 104 0 1903 93 0 30 chr15 16217200 16217470 -69478284 - AluSx SINE Alu -15 297 36 235 256 298 18 chr15 16217625 16217793 -69477961 - L3 LINE CR1 -226 1351 1137 22 0 0 0 chr15 16218688 16218710 -69477044 + AT_rich Low_complexity Low_complexity 1 22 0 298 208 96 24 chr15 16218847 16218972 -69476782 + HAL1 LINE L1 2060 2193 -314 22 70 0 0 chr15 16219090 16219133 -69476621 + AT_rich Low_complexity Low_complexity 1 43 0 450 283 59 87 chr15 16219167 16219524 -69476230 + L1ME4a LINE L1 5032 5378 -768 234 292 42 42 chr15 16219561 16219681 -69476073 + L1ME4a LINE L1 5956 6075 -46 231 201 76 83 chr15 16219698 16219842 -69475912 - L1ME4a LINE L1 -12 6109 5967 2357 54 17 7 chr15 16220513 16220808 -69474946 + AluY SINE Alu 1 298 -13 246 175 18 0 chr15 16220951 16221008 -69474746 + L1ME1 LINE L1 4981 5038 -1108 957 108 8 0 chr15 16221030 16221159 -69474595 - AluSq/x SINE Alu -183 130 1 3505 201 80 20 chr15 16221159 16222250 -69473504 + L1ME1 LINE L1 5023 6158 -8 452 269 154 50 chr15 16222312 16222591 -69473163 - L1ME4a LINE L1 -2177 5631 5324 390 284 125 11 chr15 16223270 16223446 -69472308 + MIR SINE MIR 16 211 -51 1284 237 103 13 chr15 16223814 16224278 -69471476 + L2 LINE L2 2201 2896 -417 2843 195 70 8 chr15 16224447 16225057 -69470697 - MER99 DNA DNA -179 649 2 313 263 88 44 chr15 16225096 16225256 -69470498 + L2 LINE L2 2957 3123 -190 295 270 45 11 chr15 16225285 16225374 -69470380 + MIR3 SINE MIR 67 158 -50 239 293 0 61 chr15 16225384 16225466 -69470288 + MER5B DNA MER1_type 15 91 -87 335 306 160 0 chr15 16225472 16225616 -69470138 - MER5A DNA MER1_type -6 183 17 394 282 99 11 chr15 16226716 16226897 -69468857 - MIR SINE MIR -44 218 22 1323 154 4 39 chr15 16227409 16227643 -69468111 - AluJb SINE Alu 0 312 87 380 319 98 12 chr15 16227762 16227925 -69467829 - MER5A DNA MER1_type -4 185 9 213 39 0 0 chr15 16228346 16228372 -69467382 + (CA)n Simple_repeat Simple_repeat 1 26 0 1054 132 70 9 chr15 16229007 16229212 -69466542 - LTR47A LTR ERVL -8 444 234 427 289 53 7 chr15 16229932 16230084 -69465670 + MIR3 SINE MIR 49 207 -1 219 181 111 83 chr15 16230365 16230437 -69465317 + MIR3 SINE MIR 95 168 -40 2552 45 3 3 chr15 16230824 16231133 -69464621 + AluY SINE Alu 1 309 -2 2767 13 0 3 chr15 16231509 16231815 -69463939 + AluY SINE Alu 1 305 -6 1924 90 34 0 chr15 16231828 16232094 -69463660 + L1PA12 LINE L1 5894 6168 0 233 259 35 0 chr15 16232133 16232191 -69463563 + MIR SINE MIR 91 150 -58 618 116 5 3 chr15 16232539 16232759 -69462995 + AluJo SINE Alu 1 277 -35 687 207 21 52 chr15 16232791 16232984 -69462770 - HAL1 LINE L1 -1501 1006 820 257 297 30 11 chr15 16233355 16233459 -69462295 + MIR SINE MIR 60 162 -56 302 258 38 82 chr15 16234234 16234393 -69461361 - HAL1 LINE L1 -112 2395 2244 201 147 0 0 chr15 16234793 16234827 -69460927 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 649 179 30 167 chr15 16234840 16235074 -69460680 - HAL1 LINE L1 -2302 205 4 320 291 118 9 chr15 16235280 16235477 -69460277 - MLT1K LTR MaLR -10 605 366 888 154 26 26 chr15 16236350 16236506 -69459248 - MER20 DNA MER1_type 0 219 64 188 197 16 98 chr15 16237460 16237521 -69458233 + L2 LINE L2 1238 1293 -2021 239 250 125 0 chr15 16238313 16238393 -69457361 - MIR SINE MIR -8 254 165 484 302 65 31 chr15 16238399 16238690 -69457064 - LTR16C LTR ERVL -9 482 182 649 257 13 13 chr15 16238802 16238954 -69456800 - MIR SINE MIR -103 159 8 2411 99 0 3 chr15 16243541 16243854 -69451900 - AluSx SINE Alu 0 312 1 232 294 35 12 chr15 16243860 16243945 -69451809 - L2 LINE L2 -12 3301 3215 250 309 53 49 chr15 16244881 16245146 -69450608 + L1PB2 LINE L1 5663 5928 -223 * 2153 184 30 26 chr15 16244916 16245382 -69450372 + L1MB7 LINE L1 5698 6165 -19 453 305 84 50 chr15 16245608 16245906 -69449848 + MER102b DNA MER1_type 1 308 -33 437 263 17 8 chr15 16246112 16246230 -69449524 - MIR SINE MIR -134 128 10 29 0 0 0 chr15 16247550 16247579 -69448175 + AT_rich Low_complexity Low_complexity 1 29 0 239 204 0 0 chr15 16247857 16247901 -69447853 + L2 LINE L2 1879 1922 -1392 1406 156 82 27 chr15 16247903 16248208 -69447546 - MER33 DNA MER1_type -10 314 1 443 295 113 17 chr15 16248210 16248512 -69447242 + L2 LINE L2 1959 2289 -1025 1139 294 123 20 chr15 16248535 16249014 -69446740 + L2 LINE L2 2780 3313 0 198 103 0 0 chr15 16249653 16249682 -69446072 + (TG)n Simple_repeat Simple_repeat 2 30 0 1062 56 6 81 chr15 16250093 16250138 -69445616 + L1PA12 LINE L1 6021 6068 -100 2417 58 17 0 chr15 16250138 16250431 -69445323 + AluY SINE Alu 1 298 -13 1062 56 6 81 chr15 16250431 16250545 -69445209 + L1PA12 LINE L1 6068 6168 0 764 156 4 132 chr15 16251331 16251477 -69444277 - L1MEc LINE L1 -4011 2710 2609 710 230 0 0 chr15 16251477 16251603 -69444151 - FLAM_A SINE Alu -7 126 1 764 156 4 132 chr15 16251603 16251713 -69444041 - L1MEc LINE L1 -4112 2609 2487 1390 134 4 42 chr15 16251725 16251914 -69443840 - MER46A DNA MER2_type -2496 235 55 2510 61 0 0 chr15 16251914 16252208 -69443546 + AluY SINE Alu 5 298 -13 1390 134 4 42 chr15 16252208 16252257 -69443497 - MER46A DNA MER2_type -2676 55 6 577 202 60 6 chr15 16252266 16252434 -69443320 - L1MEc LINE L1 -4252 2469 2293 2027 149 34 45 chr15 16252434 16252988 -69442766 + MLT2A2 LTR ERVL 1 554 0 1884 144 31 7 chr15 16253017 16253308 -69442446 - AluJb SINE Alu -12 300 3 291 145 32 0 chr15 16253319 16253381 -69442373 - L1MEc LINE L1 -3935 2605 2542 1350 282 29 15 chr15 16253381 16253906 -69441848 - L1MEc LINE L1 -4462 2259 1728 441 263 61 57 chr15 16253985 16254247 -69441507 - L1ME LINE L1 -297 5824 5562 431 266 33 37 chr15 16254403 16254647 -69441107 - L1MEc LINE L1 -4893 1637 1395 302 311 48 70 chr15 16254667 16254940 -69440814 - L1MEc LINE L1 -5191 1339 1073 788 300 22 45 chr15 16255097 16255364 -69440390 + MIR SINE MIR 2 262 0 3648 151 49 7 chr15 16255973 16256687 -69439067 + L1MA8 LINE L1 5543 6286 -5 1973 148 0 43 chr15 16257048 16257373 -69438381 + AluJo SINE Alu 1 311 -1 183 186 0 0 chr15 16257972 16258015 -69437739 + GA-rich Low_complexity Low_complexity 2 44 0 2158 200 91 2 chr15 16262131 16262591 -69433163 + MLT1F LTR MaLR 10 510 -32 292 314 99 0 chr15 16262618 16262739 -69433015 + MIR SINE MIR 119 251 -11 1195 288 135 35 chr15 16263324 16264018 -69431736 + L2 LINE L2 2020 2783 -531 261 155 69 17 chr15 16264072 16264130 -69431624 - MER91 DNA MER1_type -93 97 37 2483 152 31 7 chr15 16264215 16264629 -69431125 + MSTB LTR MaLR 1 424 -2 446 331 166 10 chr15 16264656 16264970 -69430784 + L2 LINE L2 2946 3308 -5 279 238 74 41 chr15 16265172 16265212 -69430542 - HAL1b LINE L1 0 6048 6011 1807 171 17 7 chr15 16265212 16265505 -69430249 + AluJo SINE Alu 1 296 -16 279 238 74 41 chr15 16265505 16265639 -69430115 - HAL1b LINE L1 -37 6011 1191 34 24 0 0 chr15 16265773 16265814 -69429940 + AT_rich Low_complexity Low_complexity 1 41 0 253 326 0 0 chr15 16265840 16265932 -69429822 - L1MC/D LINE L1 -2009 5799 5708 234 234 47 47 chr15 16265987 16266094 -69429660 - L1MC/D LINE L1 -2256 5552 5446 441 308 124 52 chr15 16267164 16267259 -69428495 + L1ME3 LINE L1 5447 5534 -628 3843 154 79 6 chr15 16267259 16267928 -69427826 - MER72 LTR ERV1 0 722 5 441 308 124 52 chr15 16267928 16267983 -69427771 + L1ME3 LINE L1 5534 5584 -578 454 108 81 0 chr15 16267983 16268057 -69427697 + MADE1 DNA Mariner 1 80 0 441 308 124 52 chr15 16268057 16268291 -69427463 + L1ME3 LINE L1 5584 5860 -302 652 291 44 0 chr15 16269280 16269462 -69426292 - MIR SINE MIR -71 191 2 39 0 0 0 chr15 16270250 16270289 -69425465 + AT_rich Low_complexity Low_complexity 1 39 0 288 326 145 55 chr15 16270516 16270915 -69424839 - L2 LINE L2 -1 3271 2837 805 319 71 48 chr15 16271499 16272242 -69423512 + L2 LINE L2 2062 2821 -493 315 122 0 0 chr15 16272268 16272317 -69423437 + (CA)n Simple_repeat Simple_repeat 1 49 0 2016 112 0 0 chr15 16272338 16272641 -69423113 + L1MB8 LINE L1 5324 5626 -552 1600 202 46 78 chr15 16272641 16272842 -69422912 - MLT1D LTR MaLR 0 505 299 1186 151 122 0 chr15 16272842 16272944 -69422810 + MER30 DNA MER1_type 1 89 -141 333 0 0 0 chr15 16272944 16272981 -69422773 + (CA)n Simple_repeat Simple_repeat 2 38 0 1186 151 122 0 chr15 16272981 16273083 -69422671 + MER30 DNA MER1_type 89 230 0 1600 202 46 78 chr15 16273083 16273381 -69422373 - MLT1D LTR MaLR -206 299 22 2583 176 18 20 chr15 16273423 16273974 -69421780 + L1MB8 LINE L1 5624 6173 -5 275 388 93 0 chr15 16274595 16274778 -69420976 + L3b LINE CR1 1260 1459 -124 3390 99 40 18 chr15 16274803 16275312 -69420442 + L1MA3 LINE L1 5725 6250 -55 2322 91 3 7 chr15 16275312 16275610 -69420144 - AluSp SINE Alu -16 297 1 3390 99 40 18 chr15 16275610 16275668 -69420086 + L1MA3 LINE L1 6250 6305 0 561 260 126 59 chr15 16275714 16276102 -69419652 - MLT1J LTR MaLR -38 473 60 1977 144 3 3 chr15 16276103 16276401 -69419353 + AluSx SINE Alu 1 298 -14 2168 158 89 3 chr15 16276498 16276890 -69418864 + MSTB LTR MaLR 1 426 0 224 179 26 0 chr15 16277110 16277149 -69418605 + L2 LINE L2 3220 3259 -13 221 266 76 51 chr15 16277457 16277615 -69418139 + L2 LINE L2 2690 2851 -463 252 330 17 25 chr15 16277706 16277824 -69417930 + L2 LINE L2 2948 3064 -208 207 194 0 0 chr15 16277892 16277928 -69417826 + (TAG)n Simple_repeat Simple_repeat 2 37 0 365 226 129 0 chr15 16277928 16278021 -69417733 - MIR SINE MIR 0 262 158 303 411 24 0 chr15 16278037 16278161 -69417593 + L2 LINE L2 3134 3260 -12 688 152 14 51 chr15 16278163 16278301 -69417453 + FLAM_C SINE Alu 1 133 0 3875 52 0 0 chr15 16278811 16279316 -69416438 + L1PA5 LINE L1 3827 4331 -1815 7003 66 0 3 chr15 16279318 16280935 -69414819 + L1PA5 LINE L1 4532 6153 -1 298 323 125 8 chr15 16281193 16281339 -69414415 - MIR SINE MIR -76 132 4 199 328 15 0 chr15 16281522 16281589 -69414165 - MIR SINE MIR 0 262 195 1797 144 89 70 chr15 16281591 16281611 -69414143 + MLT1C LTR MaLR 1 19 -448 180 0 0 0 chr15 16281611 16281631 -69414123 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 1797 144 89 70 chr15 16281631 16282068 -69413686 + MLT1C LTR MaLR 19 467 0 362 78 0 94 chr15 16282320 16282384 -69413370 + MLT1A1 LTR MaLR 1 58 -307 2071 130 87 10 chr15 16282387 16282778 -69412976 - MSTA LTR MaLR -2 426 6 1762 141 6 52 chr15 16282783 16283109 -69412645 + MLT1A1 LTR MaLR 55 365 0 488 260 93 7 chr15 16284476 16284626 -69411128 + MER5A DNA MER1_type 1 163 -26 509 257 9 0 chr15 16285142 16285255 -69410499 + MER81 DNA DNA 1 114 0 612 220 29 29 chr15 16285770 16285943 -69409811 - MER5B DNA MER1_type -1 177 5 304 233 271 8 chr15 16285951 16286084 -69409670 - L2 LINE L2 -254 3059 2892 318 235 174 0 chr15 16286086 16286184 -69409570 + L2 LINE L2 3196 3310 -3 458 314 112 5 chr15 16286192 16286380 -69409374 - L2 LINE L2 -420 2894 2687 596 169 25 8 chr15 16286380 16286498 -69409256 + L1MDa LINE L1 18 137 -6403 720 171 41 41 chr15 16286498 16286668 -69409086 + LTR8 LTR ERV1 1 170 -521 408 285 209 6 chr15 16286668 16286826 -69408928 + L1MDa LINE L1 813 1002 -5538 5260 223 82 18 chr15 16286835 16287755 -69407999 + L1MDa LINE L1 1703 2562 -3978 2259 115 10 0 chr15 16287755 16288060 -69407694 + AluSx SINE Alu 1 308 -4 5260 223 82 18 chr15 16288060 16288092 -69407662 + L1MDa LINE L1 2562 2591 -3949 2317 122 97 8 chr15 16288092 16288485 -69407269 - MSTA LTR MaLR 0 428 1 5260 223 82 18 chr15 16288485 16290080 -69405674 + L1MDa LINE L1 2591 4434 -2106 2995 162 65 17 chr15 16290080 16290654 -69405100 - MER7C DNA MER2_type 0 602 2 5260 223 82 18 chr15 16290654 16290754 -69405000 + L1MDa LINE L1 4434 4526 -2014 1908 124 20 32 chr15 16290758 16291104 -69404650 + L1MD1 LINE L1 5901 6242 0 597 328 40 66 chr15 16291104 16291452 -69404302 - L2 LINE L2 -612 2702 2364 357 248 9 9 chr15 16292533 16292646 -69403108 - MER117 DNA MER1_type -28 169 57 380 305 29 9 chr15 16293053 16293158 -69402596 + L2 LINE L2 3195 3301 -12 4159 136 28 11 chr15 16293160 16293865 -69401889 + L1MB2 LINE L1 5448 6164 -7 1212 164 9 18 chr15 16293919 16294139 -69401615 + MER20 DNA MER1_type 2 219 0 201 121 0 0 chr15 16294210 16294243 -69401511 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1774 144 10 55 chr15 16295047 16295359 -69400395 + AluJo SINE Alu 1 298 -14 356 262 78 14 chr15 16295948 16296089 -69399665 + LTR67 LTR ERVL 400 549 -8 724 260 41 12 chr15 16296149 16296391 -69399363 - MIR SINE MIR 0 262 14 184 280 197 8 chr15 16296502 16296634 -69399120 + L2 LINE L2 3051 3207 -106 1525 199 161 17 chr15 16296639 16297111 -69398643 - MLT1F LTR MaLR 0 542 3 1895 158 24 0 chr15 16297687 16297978 -69397776 + AluJb SINE Alu 1 298 -14 2420 80 0 10 chr15 16297979 16298293 -69397461 + AluY SINE Alu 1 311 0 560 290 155 87 chr15 16298391 16298726 -69397028 + L1MEd LINE L1 297 608 -5511 1595 192 11 4 chr15 16298726 16298997 -69396757 + AluJb SINE Alu 1 273 -39 560 290 155 87 chr15 16298997 16299037 -69396717 + L1MEd LINE L1 608 644 -5475 2184 142 0 0 chr15 16299037 16299340 -69396414 - AluSx SINE Alu -9 303 1 560 290 155 87 chr15 16299340 16299422 -69396332 + L1MEd LINE L1 644 786 -5333 296 154 123 0 chr15 16299619 16299684 -69396070 + MLT1K LTR MaLR 514 586 -2 1227 118 0 17 chr15 16300151 16300329 -69395425 - AluSg/x SINE Alu -1 311 137 821 286 165 16 chr15 16300964 16301327 -69394427 + L2 LINE L2 2896 3312 -1 1857 138 47 89 chr15 16302094 16302545 -69393209 - L1MD1 LINE L1 0 6242 5811 1212 171 120 47 chr15 16302564 16302838 -69392916 - AluJb SINE Alu -18 294 1 4219 80 4 2 chr15 16303826 16304379 -69391375 + MER41A LTR ERV1 1 554 0 1572 140 189 0 chr15 16304926 16305233 -69390521 - MER47A DNA MER2_type 0 366 2 372 303 99 1 chr15 16305960 16306071 -69389683 - MER5A DNA MER1_type 0 189 55 2020 140 0 32 chr15 16306071 16306379 -69389375 - AluSx SINE Alu -14 298 1 372 303 99 1 chr15 16306379 16306390 -69389364 - MER5A DNA MER1_type -134 55 46 1841 100 115 0 chr15 16306560 16306829 -69388925 - AluSq SINE Alu -13 300 1 305 310 0 0 chr15 16307665 16307752 -69388002 - LTR67 LTR ERVL -61 496 410 377 375 5 14 chr15 16308195 16308411 -69387343 + MLT1K LTR MaLR 127 340 -248 2124 123 18 26 chr15 16308609 16308991 -69386763 + L1MB2 LINE L1 5257 5635 -536 1961 121 21 12 chr15 16308991 16309314 -69386440 + L1MB2 LINE L1 5837 6169 -2 2217 107 3 0 chr15 16310600 16310889 -69384865 + AluSc SINE Alu 3 292 -17 5460 119 119 46 chr15 16311850 16312382 -69383372 + Tigger3b DNA MER2_type 1 493 -2535 1675 74 16 85 chr15 16312382 16312640 -69383114 - AluY SINE Alu -2 309 70 5460 119 119 46 chr15 16312640 16313253 -69382501 + Tigger3b DNA MER2_type 493 1230 -1 4841 160 6 50 chr15 16313639 16315030 -69380724 + L1PB4 LINE L1 4809 6144 -12 1840 247 106 22 chr15 16315115 16315918 -69379836 + L1MC4a LINE L1 5577 6446 -1362 381 121 30 0 chr15 16316038 16316104 -69379650 + L1PA16 LINE L1 6089 6156 -10 301 125 32 21 chr15 16318260 16318348 -69377406 + AluSp/q SINE Alu 252 298 -5 204 40 0 0 chr15 16318481 16318506 -69377248 + (A)n Simple_repeat Simple_repeat 1 25 0 201 310 0 23 chr15 16318894 16318981 -69376773 + T-rich Low_complexity Low_complexity 5 89 0 28 0 0 0 chr15 16318982 16319010 -69376744 + AT_rich Low_complexity Low_complexity 1 28 0 1959 154 95 31 chr15 16319232 16319685 -69376069 - MLT1D LTR MaLR -5 500 19 1734 223 133 21 chr15 16319913 16320446 -69375308 + MLT1E LTR MaLR 1 593 0 198 296 51 51 chr15 16321328 16321426 -69374328 - L2 LINE L2 -1 3271 3174 1625 155 182 22 chr15 16321874 16322242 -69373512 - MSTA LTR MaLR 0 428 2 423 0 0 0 chr15 16322242 16322289 -69373465 + (TG)n Simple_repeat Simple_repeat 2 48 0 719 307 16 0 chr15 16322446 16322638 -69373116 - MIR SINE MIR -49 213 19 2324 98 7 0 chr15 16324084 16324391 -69371363 + AluSp SINE Alu 1 309 -4 229 269 153 41 chr15 16324890 16325069 -69370685 + MIR SINE MIR 19 212 -50 250 175 25 0 chr15 16325241 16325321 -69370433 + (TA)n Simple_repeat Simple_repeat 2 83 0 893 146 0 127 chr15 16325321 16325526 -69370228 + FRAM SINE Alu 1 176 0 776 134 195 24 chr15 16325978 16326142 -69369612 + AluJb SINE Alu 96 287 -25 513 125 0 0 chr15 16326142 16326230 -69369524 + (GA)n Simple_repeat Simple_repeat 1 88 0 2062 145 3 3 chr15 16326871 16327182 -69368572 - AluSx SINE Alu -1 311 1 4028 129 83 8 chr15 16327282 16327417 -69368337 - L1MA9 LINE L1 -2 6310 6187 351 0 0 0 chr15 16327417 16327456 -69368298 + (TG)n Simple_repeat Simple_repeat 2 40 0 4028 129 83 8 chr15 16327456 16327793 -69367961 - L1MA9 LINE L1 -125 6187 5877 243 0 0 0 chr15 16327793 16327820 -69367934 + (TG)n Simple_repeat Simple_repeat 2 28 0 4028 129 83 8 chr15 16327820 16328081 -69367673 - L1MA9 LINE L1 -435 5877 5521 486 278 35 7 chr15 16328448 16328592 -69367162 - MIR3 SINE MIR -36 172 25 69 101 0 0 chr15 16329110 16329347 -69366407 + AT_rich Low_complexity Low_complexity 1 237 0 381 322 135 10 chr15 16329638 16329846 -69365908 + MIR SINE MIR 23 256 -6 280 185 136 0 chr15 16330618 16330699 -69365055 + L1ME LINE L1 5708 5799 -363 1988 74 0 19 chr15 16330815 16331084 -69364670 + L1PA8 LINE L1 5907 6170 -2 4205 101 3 15 chr15 16331158 16331813 -69363941 + L1MA3 LINE L1 5316 5962 -343 8405 82 12 2 chr15 16333089 16334308 -69361446 + L1P LINE L1 3700 4930 -1216 381 327 45 13 chr15 16335128 16335284 -69360470 - MIR SINE MIR -41 221 61 444 202 8 16 chr15 16335628 16335752 -69360002 + L1 LINE L1 2974 3096 -3050 * 6331 81 18 11 chr15 16335749 16336689 -69359065 + L1P LINE L1 3854 4800 -1346 2035 107 57 13 chr15 16337314 16337614 -69358140 - AluSp SINE Alu 0 313 1 242 337 81 12 chr15 16337814 16337900 -69357854 + L2 LINE L2 3160 3251 -21 3557 59 0 0 chr15 16338473 16338917 -69356837 + L1PA5 LINE L1 5698 6141 -13 249 326 41 20 chr15 16338956 16339054 -69356700 - L2 LINE L2 0 3272 3173 31 44 0 0 chr15 16339615 16339660 -69356094 + AT_rich Low_complexity Low_complexity 1 45 0 2388 80 10 0 chr15 16340724 16341023 -69354731 + AluSq SINE Alu 1 302 -11 216 182 0 0 chr15 16341383 16341427 -69354327 + (TA)n Simple_repeat Simple_repeat 2 45 0 180 0 0 0 chr15 16341623 16341643 -69354111 + (CA)n Simple_repeat Simple_repeat 2 21 0 338 340 155 26 chr15 16342259 16342826 -69352928 + L2 LINE L2 189 828 -2486 602 339 127 31 chr15 16342878 16343831 -69351923 + L2 LINE L2 1807 2850 -464 424 355 46 30 chr15 16343882 16344079 -69351675 + L2 LINE L2 3073 3272 0 626 182 42 14 chr15 16346122 16346265 -69349489 - L1MA10 LINE L1 -7 6327 6181 394 233 79 133 chr15 16347180 16347700 -69348054 - MLT1J LTR MaLR -19 492 1 2273 108 3 0 chr15 16348686 16348991 -69346763 + AluSp SINE Alu 1 306 -7 255 300 107 50 chr15 16349085 16349225 -69346529 + MIR3 SINE MIR 20 167 -41 478 321 16 21 chr15 16349761 16349951 -69345803 - MER5A DNA MER1_type 0 189 1 32 0 0 0 chr15 16350321 16350353 -69345401 + AT_rich Low_complexity Low_complexity 1 32 0 352 217 52 17 chr15 16350539 16350654 -69345100 + MER34 LTR ERV1 1 119 -423 1084 136 63 144 chr15 16350688 16351006 -69344748 + MER34B LTR ERV1 208 489 -96 1207 162 79 107 chr15 16351006 16351324 -69344430 - AluJo SINE Alu 0 310 1 1084 136 63 144 chr15 16351324 16351414 -69344340 + MER34B LTR ERV1 489 585 0 581 182 27 0 chr15 16351708 16351818 -69343936 + MER34B LTR ERV1 161 273 -292 2163 126 3 0 chr15 16351996 16352282 -69343472 + AluSp SINE Alu 1 287 -26 303 113 0 0 chr15 16352295 16352348 -69343406 + (TAAAA)n Simple_repeat Simple_repeat 3 55 0 664 232 32 0 chr15 16352437 16352562 -69343192 + L2 LINE L2 3185 3313 0 297 198 161 0 chr15 16352682 16352763 -69342991 - MER63A DNA MER1_type -36 174 81 363 165 101 13 chr15 16352847 16352926 -69342828 - MER63A DNA MER1_type 0 86 1 22 35 0 0 chr15 16353290 16353319 -69342435 + AT_rich Low_complexity Low_complexity 1 29 0 1294 201 84 4 chr15 16354084 16354357 -69341397 - AluJo SINE Alu -16 296 2 1003 151 0 24 chr15 16354421 16354587 -69341167 + FRAM SINE Alu 8 169 -7 193 182 91 0 chr15 16354786 16354830 -69340924 - L2 LINE L2 -15 3298 3251 1672 192 69 65 chr15 16355152 16355616 -69340138 + MLT1C LTR MaLR 1 466 -1 9334 26 6 244 chr15 16355804 16357622 -69338132 - SVA Other Other 0 1386 2 225 154 0 0 chr15 16357627 16357666 -69338088 + G-rich Low_complexity Low_complexity 2 40 0 1461 174 18 82 chr15 16358400 16358728 -69337026 - AluJo SINE Alu -5 307 1 499 242 92 0 chr15 16359118 16359238 -69336516 + FLAM_A SINE Alu 1 131 -2 1242 7 0 0 chr15 16359952 16360087 -69335667 - AluYb8 SINE Alu -5 313 179 25 0 0 0 chr15 16360089 16360114 -69335640 + AT_rich Low_complexity Low_complexity 1 25 0 379 278 0 0 chr15 16361416 16361506 -69334248 + MER5A DNA MER1_type 9 98 -91 1358 167 188 0 chr15 16361506 16361788 -69333966 - ERVL LTR ERVL -653 5111 4777 591 316 69 48 chr15 16361982 16362359 -69333395 + L3 LINE CR1 297 681 -896 29 84 0 0 chr15 16362438 16362509 -69333245 + AT_rich Low_complexity Low_complexity 1 71 0 402 282 98 63 chr15 16364084 16364145 -69331609 + MER5A DNA MER1_type 10 67 -122 2053 136 0 32 chr15 16364145 16364453 -69331301 + AluSx SINE Alu 1 298 -14 402 282 98 63 chr15 16364453 16364565 -69331189 + MER5A DNA MER1_type 67 189 0 1712 140 189 0 chr15 16365294 16365601 -69330153 + MER47A DNA MER2_type 2 366 0 4344 85 2 2 chr15 16366148 16366702 -69329052 - MER41A LTR ERV1 0 554 1 459 294 73 25 chr15 16367676 16367689 -69328065 + L1MB5 LINE L1 5773 5784 -390 1216 171 120 47 chr15 16367689 16367963 -69327791 + AluJb SINE Alu 1 294 -8 459 294 73 25 chr15 16367963 16368194 -69327560 + L1MB5 LINE L1 5784 6029 -145 * 2049 138 47 89 chr15 16367982 16368433 -69327321 + L1MD1 LINE L1 5811 6242 0 696 292 163 14 chr15 16369200 16369563 -69326191 - L2 LINE L2 -1 3312 2896 1234 118 0 17 chr15 16370198 16370376 -69325378 + AluSg/x SINE Alu 135 309 -1 660 288 81 76 chr15 16370843 16371301 -69324453 - MLT1K LTR MaLR -2 586 127 236 290 14 0 chr15 16371460 16371529 -69324225 + LTR67 LTR ERVL 111 180 -377 330 310 0 0 chr15 16371744 16371831 -69323923 + LTR67 LTR ERVL 410 496 -61 1851 100 115 0 chr15 16372667 16372936 -69322818 + AluSq SINE Alu 1 300 -13 2098 127 7 0 chr15 16373117 16373445 -69322309 + AluSx SINE Alu 1 330 0 260 229 62 10 chr15 16373446 16373542 -69322212 + L1ME4a LINE L1 5977 6077 -44 2094 133 3 13 chr15 16374701 16375016 -69320738 + AluJb SINE Alu 1 312 0 2849 138 48 84 chr15 16375256 16375629 -69320125 + L1MB7 LINE L1 5567 5952 -232 1920 183 0 0 chr15 16375629 16375941 -69319813 + AluJb SINE Alu 1 312 0 2849 138 48 84 chr15 16375941 16376131 -69319623 + L1MB7 LINE L1 5952 6108 -76 2353 74 0 0 chr15 16376131 16376443 -69319311 + AluY SINE Alu 1 312 0 2849 138 48 84 chr15 16376443 16376516 -69319238 + L1MB7 LINE L1 6108 6182 -2 2344 92 16 3 chr15 16376673 16376976 -69318778 - AluSx SINE Alu -5 307 1 1739 208 22 22 chr15 16377490 16377861 -69317893 - MLT1A2 LTR MaLR 0 374 4 2167 106 0 22 chr15 16377959 16378271 -69317483 + AluSx SINE Alu 1 305 -7 2252 95 0 20 chr15 16379366 16379671 -69316083 + AluSq SINE Alu 1 299 -14 1917 137 20 0 chr15 16379708 16380001 -69315753 - AluSx SINE Alu -13 299 1 400 273 52 38 chr15 16380191 16380414 -69315340 + AluSq SINE Alu 85 286 -17 957 219 9 14 chr15 16380994 16381209 -69314545 - AluSp SINE Alu -99 214 1 2309 100 13 0 chr15 16381339 16381638 -69314116 + AluSq SINE Alu 1 303 -10 198 143 0 0 chr15 16382394 16382429 -69313325 + (TATG)n Simple_repeat Simple_repeat 2 36 0 180 0 0 0 chr15 16382633 16382653 -69313101 + (CA)n Simple_repeat Simple_repeat 2 21 0 858 155 143 31 chr15 16386514 16386737 -69309017 - MLT1G3 LTR MaLR -180 410 149 745 53 0 11 chr15 16386757 16386852 -69308902 - HY3 scRNA scRNA -2 99 6 791 220 86 53 chr15 16386863 16387072 -69308682 - MLT1G1 LTR MaLR -379 216 1 2034 142 10 0 chr15 16387119 16387421 -69308333 + AluSx SINE Alu 1 305 -7 1583 175 10 109 chr15 16387522 16387758 -69307996 - MLT1A1 LTR MaLR 0 365 184 820 174 0 8 chr15 16387758 16387890 -69307864 - FLAM_A SINE Alu -1 132 2 1583 175 10 109 chr15 16387890 16388058 -69307696 - MLT1A1 LTR MaLR -181 184 1 2485 182 9 66 chr15 16388365 16388908 -69306846 + MLT2B1 LTR ERVL 1 512 -8 22 0 0 0 chr15 16388916 16388938 -69306816 + AT_rich Low_complexity Low_complexity 1 22 0 674 269 48 88 chr15 16389489 16389909 -69305845 + MLT1I LTR MaLR 5 407 -2 222 37 0 0 chr15 16390329 16390356 -69305398 + (TTG)n Simple_repeat Simple_repeat 1 27 0 215 152 22 0 chr15 16390455 16390501 -69305253 + GA-rich Low_complexity Low_complexity 2 48 0 257 253 133 40 chr15 16390952 16391102 -69304652 + MIR SINE MIR 85 248 -14 1534 202 7 7 chr15 16391716 16392013 -69303741 - AluJb SINE Alu 0 312 16 594 279 29 39 chr15 16392035 16392315 -69303439 - AluY SINE Alu -24 287 11 1339 104 21 31 chr15 16392420 16392612 -69303142 - AluY SINE Alu -121 190 1 647 294 58 25 chr15 16392618 16392945 -69302809 - MARNA DNA Mariner -36 550 213 1597 190 37 55 chr15 16393181 16393376 -69302378 + L1M4 LINE L1 1535 1732 -4912 1931 108 6 94 chr15 16393376 16393718 -69302036 + AluSx SINE Alu 1 312 0 1597 190 37 55 chr15 16393718 16393925 -69301829 + L1M4 LINE L1 1732 2030 -4614 880 203 0 0 chr15 16394141 16394289 -69301465 - MER77 LTR ERV1 -457 148 1 315 136 0 68 chr15 16394294 16394353 -69301401 + L1MC5 LINE L1 7529 7583 -378 2173 227 14 41 chr15 16394397 16394987 -69300767 - L1ME1 LINE L1 -5 6161 5588 1256 208 48 30 chr15 16394983 16395247 -69300507 + L1ME LINE L1 4985 5243 -923 * 2359 98 0 0 chr15 16395247 16395543 -69300211 + AluSg SINE Alu 1 296 -14 1256 208 48 30 chr15 16395543 16395875 -69299879 + L1ME LINE L1 5243 5590 -576 1066 265 65 6 chr15 16395892 16396238 -69299516 - L1MC4 LINE L1 -1 8041 7690 429 216 128 57 chr15 16396252 16396311 -69299443 + L1MC5 LINE L1 7600 7653 -308 1643 127 76 22 chr15 16396311 16396587 -69299167 - AluJo SINE Alu -21 291 1 429 216 128 57 chr15 16396587 16396823 -69298931 + L1MC5 LINE L1 7653 7916 -45 376 306 185 21 chr15 16396864 16397204 -69298550 - L2 LINE L2 -568 2746 2351 2244 71 7 10 chr15 16397825 16398120 -69297634 + AluSc SINE Alu 1 294 -15 24 32 0 0 chr15 16398527 16398558 -69297196 + GC_rich Low_complexity Low_complexity 1 31 0 1050 89 272 0 chr15 16399294 16399474 -69296280 + MER30 DNA MER1_type 2 230 0 1823 157 31 3 chr15 16399663 16399956 -69295798 - AluJo SINE Alu -11 301 1 390 182 0 26 chr15 16400101 16400178 -69295576 - L2 LINE L2 -50 3263 3189 217 178 22 0 chr15 16400666 16400711 -69295043 - L2 LINE L2 -1 3271 3226 2069 109 14 0 chr15 16400750 16401034 -69294720 - AluSx SINE Alu -24 288 1 679 259 89 4 chr15 16401036 16401272 -69294482 - MER46C DNA MER2_type -15 323 68 446 299 118 18 chr15 16401476 16401807 -69293947 - L1ME1 LINE L1 -2191 5617 5254 460 277 115 31 chr15 16402312 16402590 -69293164 + L2 LINE L2 3013 3270 -2 402 282 135 0 chr15 16402964 16403122 -69292632 + MIR SINE MIR 6 182 -62 449 285 199 8 chr15 16403336 16403592 -69292162 + L2 LINE L2 3008 3312 -1 24 32 0 0 chr15 16403706 16403737 -69292017 + AT_rich Low_complexity Low_complexity 1 31 0 493 237 59 13 chr15 16404417 16404569 -69291185 - MER20B DNA MER1_type -618 165 7 21 71 0 0 chr15 16404940 16404982 -69290772 + AT_rich Low_complexity Low_complexity 1 42 0 2359 193 46 97 chr15 16405053 16405819 -69289935 - MER21B LTR ERV1 -124 739 13 245 256 0 13 chr15 16405907 16405985 -69289769 + L1ME LINE L1 5684 5760 -361 1063 191 19 5 chr15 16405988 16406198 -69289556 - MER20 DNA MER1_type -3 216 4 180 0 0 0 chr15 16407677 16407697 -69288057 + (T)n Simple_repeat Simple_repeat 1 20 0 1800 175 30 7 chr15 16408008 16408311 -69287443 + AluJo SINE Alu 2 311 -1 2536 50 0 7 chr15 16408761 16409061 -69286693 - AluY SINE Alu -13 298 1 826 152 8 0 chr15 16409476 16409608 -69286146 - FLAM_C SINE Alu 0 133 1 27 49 0 0 chr15 16409610 16409651 -69286103 + AT_rich Low_complexity Low_complexity 1 41 0 10464 115 22 13 chr15 16409686 16411402 -69284352 + Tigger1 DNA MER2_type 688 2418 0 548 287 153 18 chr15 16411830 16412112 -69283642 - L2 LINE L2 0 3313 2994 2269 186 59 21 chr15 16414393 16414711 -69281043 - L1MA9 LINE L1 -190 6122 5771 243 0 0 0 chr15 16414711 16414738 -69281016 + (TG)n Simple_repeat Simple_repeat 2 28 0 2269 186 59 21 chr15 16414738 16414999 -69280755 - L1MA9 LINE L1 -541 5771 5521 421 198 50 20 chr15 16415573 16415674 -69280080 + U13 snRNA snRNA 1 104 0 1057 120 0 7 chr15 16416043 16416220 -69279534 - AluSp SINE Alu 0 312 137 256 105 0 0 chr15 16416586 16416624 -69279130 + AluSg/x SINE Alu 196 233 -67 486 264 68 71 chr15 16416805 16417116 -69278638 - L1M4 LINE L1 -1334 4812 4503 1723 154 54 13 chr15 16417125 16417440 -69278314 - AluJo SINE Alu 0 328 2 2064 157 0 6 chr15 16417699 16418011 -69277743 - AluSg SINE Alu 0 310 1 204 200 0 0 chr15 16418794 16418839 -69276915 + A-rich Low_complexity Low_complexity 5 49 0 2188 122 0 3 chr15 16419125 16419419 -69276335 - AluSx SINE Alu -19 293 1 247 317 39 10 chr15 16419738 16419842 -69275912 + MIR SINE MIR 47 153 -109 1133 114 0 0 chr15 16420168 16420343 -69275411 - L1MA5A LINE L1 0 6297 6123 2327 97 0 0 chr15 16420871 16421169 -69274585 - AluSg SINE Alu -12 298 1 679 133 0 0 chr15 16422155 16422253 -69273501 + AluJ/FLAM SINE Alu 2 99 -213 633 293 160 30 chr15 16422260 16422598 -69273156 + L2 LINE L2 2921 3302 -11 257 193 0 0 chr15 16422933 16422990 -69272764 - L1MB5 LINE L1 -8 6166 6110 2330 82 3 3 chr15 16424747 16425051 -69270703 + AluY SINE Alu 1 304 -7 181 298 208 29 chr15 16425122 16425401 -69270353 - L2 LINE L2 -637 2677 2349 762 154 29 0 chr15 16426222 16426358 -69269396 + MER3 DNA MER1_type 5 144 -65 902 193 12 6 chr15 16426979 16427140 -69268614 + FRAM SINE Alu 2 163 -3 781 173 7 22 chr15 16427327 16427466 -69268288 - FRAM SINE Alu -18 158 22 918 207 25 0 chr15 16429249 16429447 -69266307 + MER20 DNA MER1_type 5 207 -12 2208 101 0 7 chr15 16429992 16430288 -69265466 - AluSq SINE Alu -19 294 1 1760 139 3 96 chr15 16431052 16431384 -69264370 + AluJb SINE Alu 1 301 -1 240 200 80 27 chr15 16431548 16431623 -69264131 + L1ME4a LINE L1 5944 6022 -99 192 152 0 0 chr15 16433738 16433771 -69261983 + (TA)n Simple_repeat Simple_repeat 2 34 0 2463 78 0 0 chr15 16434218 16434524 -69261230 - AluY SINE Alu -5 306 1 635 276 87 0 chr15 16434784 16434980 -69260774 + MIR SINE MIR 29 241 -21 436 288 131 0 chr15 16435270 16435499 -69260255 + L1MC4a LINE L1 5672 5930 -1878 25 65 0 0 chr15 16435665 16435711 -69260043 + AT_rich Low_complexity Low_complexity 1 46 0 1632 159 9 73 chr15 16435967 16436106 -69259648 + AluJo SINE Alu 1 147 -165 1987 128 0 24 chr15 16436106 16436424 -69259330 + AluSx SINE Alu 1 311 0 1632 159 9 73 chr15 16436424 16436609 -69259145 + AluJo SINE Alu 147 306 -6 816 229 34 0 chr15 16436651 16436826 -69258928 - MER5A DNA MER1_type -8 181 1 1820 153 31 3 chr15 16436941 16437229 -69258525 + AluJb SINE Alu 1 296 -16 213 311 0 49 chr15 16438172 16438233 -69257521 + MIR SINE MIR 26 83 -125 471 335 88 13 chr15 16439953 16440180 -69255574 - MIR SINE MIR -8 254 11 371 283 0 19 chr15 16440693 16440799 -69254955 - MIR SINE MIR -80 182 79 503 174 55 0 chr15 16441755 16441915 -69253839 - AluSg/x SINE Alu 0 358 193 203 0 37 0 chr15 16441998 16442025 -69253729 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 1852 127 54 42 chr15 16442063 16442394 -69253360 - MER1B DNA MER1_type -1 336 2 850 93 36 0 chr15 16443474 16443613 -69252141 + MER30 DNA MER1_type 1 144 -86 890 171 0 0 chr15 16445572 16445718 -69250036 - FRAM SINE Alu -30 146 1 2325 84 7 0 chr15 16445963 16446249 -69249505 + AluSq SINE Alu 9 296 -17 2626 40 3 0 chr15 16446790 16447089 -69248665 - AluY SINE Alu -11 300 1 13457 74 5 7 chr15 16447416 16448313 -69247441 - L1PA7 LINE L1 0 6154 5257 2143 109 3 0 chr15 16448313 16448607 -69247147 - AluSp SINE Alu -18 295 1 13457 74 5 7 chr15 16448607 16450300 -69245454 - L1PA7 LINE L1 -897 5257 3565 1336 86 43 0 chr15 16450301 16450510 -69245244 + L1PA7 LINE L1 3333 3550 -2596 577 253 112 18 chr15 16450948 16451142 -69244612 + MIR SINE MIR 15 225 -37 2254 100 0 3 chr15 16451437 16451754 -69244000 + AluSq SINE Alu 1 316 0 22 0 0 0 chr15 16452404 16452426 -69243328 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 16452614 16452636 -69243118 + AT_rich Low_complexity Low_complexity 1 22 0 1640 186 75 3 chr15 16453200 16453518 -69242236 + MER58B DNA MER1_type 1 341 0 2202 136 0 0 chr15 16453584 16453885 -69241869 + AluSx SINE Alu 1 301 -11 205 269 66 86 chr15 16455745 16455942 -69239812 - L2 LINE L2 -349 2965 2773 750 252 60 28 chr15 16456234 16456452 -69239302 + MIR SINE MIR 5 229 -33 1221 94 0 0 chr15 16457896 16458108 -69237646 + (TCCA)n Simple_repeat Simple_repeat 1 212 0 1028 281 107 69 chr15 16458150 16459163 -69236591 - L2 LINE L2 -83 3230 2164 1806 162 0 3 chr15 16459188 16459472 -69236282 + AluJo SINE Alu 2 284 -28 1834 152 0 10 chr15 16459717 16460006 -69235748 - AluSq SINE Alu -27 286 1 236 250 42 28 chr15 16460428 16460572 -69235182 + T-rich Low_complexity Low_complexity 5 150 0 3084 150 16 6 chr15 16460572 16461071 -69234683 - L1MA9 LINE L1 0 6312 5809 2048 132 0 20 chr15 16461287 16461590 -69234164 + AluJb SINE Alu 1 297 -15 1685 159 14 10 chr15 16461888 16462184 -69233570 + AluJb SINE Alu 1 297 -15 183 139 0 0 chr15 16463716 16463752 -69232002 + (T)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr15 16464774 16464796 -69230958 + AT_rich Low_complexity Low_complexity 1 22 0 1325 82 0 22 chr15 16466931 16467114 -69228640 + AluSg/x SINE Alu 126 304 -8 394 273 55 42 chr15 16467194 16467359 -69228395 + MER5B DNA MER1_type 2 168 -10 300 122 71 71 chr15 16467637 16467735 -69228019 + L1ME4a LINE L1 6023 6120 -1 859 288 82 39 chr15 16469401 16469887 -69225867 + L1MB7 LINE L1 5314 5820 -1988 1789 164 21 0 chr15 16469892 16470178 -69225576 + AluJo SINE Alu 1 292 -20 915 139 0 8 chr15 16470186 16470315 -69225439 - FLAM_C SINE Alu -5 128 1 1174 188 125 53 chr15 16470374 16470694 -69225060 - MER2 DNA MER2_type 0 344 2 855 106 0 0 chr15 16470848 16470961 -69224793 + AluSg/x SINE Alu 173 285 -25 2389 86 0 0 chr15 16471110 16471413 -69224341 - AluY SINE Alu -8 303 1 343 187 53 53 chr15 16471447 16471522 -69224232 - MER2 DNA MER2_type -3 342 268 565 220 0 0 chr15 16472398 16472507 -69223247 + L1MB7 LINE L1 6069 6177 -7 200 308 0 19 chr15 16473354 16473406 -69222348 - MIR SINE MIR -112 96 46 190 309 98 32 chr15 16474348 16474471 -69221283 + L2 LINE L2 3173 3303 -10 1423 181 18 14 chr15 16474612 16474933 -69220821 - AluJb SINE Alu 0 322 1 187 178 22 44 chr15 16475657 16475702 -69220052 - L2 LINE L2 -16 3256 3213 474 339 0 16 chr15 16478468 16478595 -69217159 - MIR3 SINE MIR -48 160 36 24 32 0 0 chr15 16478655 16478686 -69217068 + AT_rich Low_complexity Low_complexity 1 31 0 842 156 0 0 chr15 16478710 16478838 -69216916 - FRAM SINE Alu -9 167 40 1957 105 36 129 chr15 16478920 16479331 -69216423 - THE1C LTR MaLR -2 373 1 10718 87 78 3 chr15 16479331 16480802 -69214952 - THE1B-int LTR MaLR 0 1580 1 2736 108 5 24 chr15 16480802 16481173 -69214581 - THE1B LTR MaLR 0 364 1 399 229 94 25 chr15 16482971 16483048 -69212706 - L1MD3 LINE L1 -21 7974 7904 636 14 0 0 chr15 16483048 16483121 -69212633 + (TA)n Simple_repeat Simple_repeat 1 73 0 1924 141 0 7 chr15 16483121 16483404 -69212350 - AluJb SINE Alu -26 286 6 399 229 94 25 chr15 16483404 16483553 -69212201 - L1MD3 LINE L1 -90 7905 6048 * 1126 156 46 25 chr15 16483540 16483778 -69211976 - L1MDa LINE L1 -4221 2319 2077 * 1213 178 55 38 chr15 16483773 16484066 -69211688 - L1MDa LINE L1 -4724 1816 1519 572 219 0 0 chr15 16484087 16484183 -69211571 - AluJ/FLAM SINE Alu -215 97 2 1352 151 73 13 chr15 16484184 16484470 -69211284 - MER33 DNA MER1_type -37 287 1 2238 141 6 35 chr15 16484981 16485328 -69210426 + MER1B DNA MER1_type 1 337 0 1906 142 9 28 chr15 16485440 16485758 -69209996 + AluJo SINE Alu 1 312 0 1743 141 6 48 chr15 16485924 16486071 -69209683 + AluSx SINE Alu 1 130 -182 264 30 0 0 chr15 16486071 16486104 -69209650 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1743 141 6 48 chr15 16486104 16486268 -69209486 + AluSx SINE Alu 130 299 -13 1724 180 39 25 chr15 16486708 16487141 -69208613 - MLT1D LTR MaLR 0 505 1 326 23 23 0 chr15 16487744 16487787 -69207967 + (TG)n Simple_repeat Simple_repeat 2 45 0 2135 95 39 0 chr15 16488300 16488585 -69207169 - AluSg SINE Alu -14 296 1 1286 135 31 0 chr15 16488618 16488811 -69206943 - AluSg/x SINE Alu -10 302 104 184 312 92 72 chr15 16488971 16489375 -69206379 - L2 LINE L2 -340 2974 2563 1164 138 159 0 chr15 16489577 16489766 -69205988 - MER20 DNA MER1_type 0 219 1 1560 151 28 31 chr15 16490073 16490364 -69205390 + AluJo SINE Alu 14 303 -9 348 257 79 46 chr15 16490669 16490821 -69204933 + L1ME LINE L1 5536 5692 -429 1374 148 80 82 chr15 16490821 16491198 -69204556 - Charlie1b DNA MER1_type 0 523 148 1724 180 39 25 chr15 16491675 16492108 -69203646 - MLT1D LTR MaLR 0 505 1 326 23 23 0 chr15 16492711 16492754 -69203000 + (TG)n Simple_repeat Simple_repeat 2 45 0 2256 62 28 0 chr15 16493267 16493556 -69202198 - AluY SINE Alu -14 297 1 186 290 65 0 chr15 16493629 16493691 -69202063 + L2 LINE L2 1769 1834 -1480 527 217 17 0 chr15 16493864 16493984 -69201770 - L1M4 LINE L1 -2453 3693 3572 857 246 42 32 chr15 16494017 16494400 -69201354 - L1M4 LINE L1 -2685 3461 3056 681 250 90 5 chr15 16494401 16494589 -69201165 + MER58C DNA MER1_type 2 205 -10 530 223 206 40 chr15 16494589 16494749 -69201005 - L1M4 LINE L1 -3673 2473 2341 784 139 49 8 chr15 16494749 16494871 -69200883 - FLAM_A SINE Alu -6 127 1 530 223 206 40 chr15 16494871 16494928 -69200826 - L1M4 LINE L1 -3805 2341 2295 2147 117 30 0 chr15 16494928 16495228 -69200526 - AluSg SINE Alu -1 309 1 530 223 206 40 chr15 16495228 16495256 -69200498 - L1M4 LINE L1 -3851 2295 2186 1286 135 31 0 chr15 16495261 16495454 -69200300 - AluSg/x SINE Alu -10 300 102 184 312 92 72 chr15 16495614 16496018 -69199736 - L2 LINE L2 -340 2974 2563 1137 143 159 0 chr15 16496220 16496409 -69199345 - MER20 DNA MER1_type 0 219 1 1728 155 23 26 chr15 16496703 16497007 -69198747 + AluJo SINE Alu 1 303 -9 348 257 79 46 chr15 16497312 16497464 -69198290 + L1ME4a LINE L1 5536 5692 -429 2313 163 58 61 chr15 16497464 16497985 -69197769 - Charlie1b DNA MER1_type 0 523 5 337 265 97 62 chr15 16497993 16498139 -69197615 + L1ME4a LINE L1 5743 5882 -239 2411 63 3 3 chr15 16498139 16498440 -69197314 + AluY SINE Alu 1 301 -10 337 265 97 62 chr15 16498440 16498602 -69197152 + L1ME4a LINE L1 5882 6062 -59 1275 211 8 8 chr15 16498610 16498857 -69196897 - AluJo SINE Alu -17 295 49 1151 190 47 9 chr15 16498921 16499132 -69196622 + MER20 DNA MER1_type 1 219 0 195 380 44 9 chr15 16501332 16501445 -69194309 - L2 LINE L2 -6 3266 3150 2245 107 0 0 chr15 16501489 16501780 -69193974 + AluSx SINE Alu 1 291 -21 2177 121 0 0 chr15 16502260 16502557 -69193197 - AluSx SINE Alu -15 297 1 1025 181 78 45 chr15 16503583 16503826 -69191928 - MIR SINE MIR -11 251 1 24 0 0 0 chr15 16503914 16503938 -69191816 + AT_rich Low_complexity Low_complexity 1 24 0 2562 75 0 3 chr15 16504276 16504584 -69191170 + AluSq SINE Alu 1 307 -6 2026 146 13 7 chr15 16505719 16506021 -69189733 + AluJo SINE Alu 1 304 -8 507 118 0 0 chr15 16506870 16506955 -69188799 + (CTG)n Simple_repeat Simple_repeat 2 86 0 701 282 42 6 chr15 16509912 16510140 -69185614 + MIR SINE MIR 28 262 0 2698 45 0 3 chr15 16510226 16510534 -69185220 + AluY SINE Alu 1 307 -4 221 211 53 0 chr15 16510573 16510630 -69185124 + MIR SINE MIR 38 97 -111 704 313 76 33 chr15 16510647 16511309 -69184445 - L2 LINE L2 0 3313 2622 296 325 8 32 chr15 16511502 16511628 -69184126 + LTR67 LTR ERVL 93 215 -342 1023 153 16 37 chr15 16511645 16511835 -69183919 - MER30B DNA MER1_type -4 186 1 591 293 102 9 chr15 16511944 16512169 -69183585 + L2 LINE L2 2226 2471 -843 948 198 0 0 chr15 16512169 16512341 -69183413 - AluJb SINE Alu -19 293 122 271 254 0 0 chr15 16512438 16512497 -69183257 + MLT1E2 LTR MaLR 2 60 -566 505 309 85 11 chr15 16512562 16512750 -69183004 + MIR SINE MIR 13 214 -48 627 165 127 7 chr15 16512767 16512908 -69182846 - MER3 DNA MER1_type -63 146 2 743 175 126 10 chr15 16512995 16513201 -69182553 + MER113 DNA MER1_type? 15 244 -277 257 266 13 0 chr15 16513913 16513992 -69181762 + (TTAGGG)n Simple_repeat Simple_repeat 5 84 0 439 200 24 0 chr15 16514094 16514179 -69181575 + AluJb SINE Alu 203 289 -23 1115 211 89 28 chr15 16514185 16514512 -69181242 - LTR37A LTR ERV1 -72 354 8 204 177 16 16 chr15 16514514 16514576 -69181178 + T-rich Low_complexity Low_complexity 4 65 0 498 140 30 30 chr15 16514601 16514701 -69181053 + MIR SINE MIR 97 196 -66 237 266 295 0 chr15 16515370 16515543 -69180211 + MIR SINE MIR 28 251 -11 338 268 41 0 chr15 16516103 16516200 -69179554 - MIR SINE MIR -11 251 151 356 264 97 32 chr15 16516481 16516636 -69179118 + MIR SINE MIR 49 213 -49 529 236 28 88 chr15 16517599 16517815 -69177939 - MIR3 SINE MIR -3 205 3 225 0 0 0 chr15 16519449 16519474 -69176280 + (TTA)n Simple_repeat Simple_repeat 2 26 0 852 100 0 9 chr15 16519474 16519584 -69176170 - AluJb SINE Alu -191 121 13 587 251 53 6 chr15 16519729 16519900 -69175854 + MIR3 SINE MIR 9 187 -21 2143 122 3 22 chr15 16520892 16521204 -69174550 - AluJb SINE Alu -6 306 1 2277 133 37 50 chr15 16521206 16521664 -69174090 + Tigger2 DNA MER2_type 2267 2718 0 675 298 105 16 chr15 16521941 16522199 -69173555 + Charlie2 DNA MER1_type 24 304 -2558 1762 197 69 36 chr15 16522208 16522722 -69173032 + Charlie2 DNA MER1_type 1873 2408 -454 2360 90 7 3 chr15 16522722 16523022 -69172732 - AluSc SINE Alu -8 301 1 1762 197 69 36 chr15 16523022 16523055 -69172699 + Charlie2 DNA MER1_type 2408 2438 -424 1079 162 6 11 chr15 16523076 16523255 -69172499 - AluJb SINE Alu -2 310 133 794 177 32 57 chr15 16523255 16523286 -69172468 + Charlie2 DNA MER1_type 2476 2506 -356 2136 157 0 0 chr15 16523286 16523598 -69172156 + AluJb SINE Alu 1 312 0 794 177 32 57 chr15 16523598 16523814 -69171940 + Charlie2 DNA MER1_type 2506 2717 -145 407 237 34 0 chr15 16523870 16523988 -69171766 + Charlie2 DNA MER1_type 2710 2831 -31 1975 140 0 28 chr15 16525891 16526212 -69169542 + AluJb SINE Alu 1 312 0 363 192 0 55 chr15 16526661 16526734 -69169020 + MER45A DNA AcHobo 24 92 -86 981 140 0 7 chr15 16526748 16526898 -69168856 - AluJ SINE Alu -24 288 140 2001 160 3 3 chr15 16526903 16527203 -69168551 - AluJb SINE Alu -11 301 2 356 189 54 0 chr15 16527203 16527277 -69168477 + MER45A DNA AcHobo 100 177 -1 2514 51 7 0 chr15 16528426 16528720 -69167034 + AluY SINE Alu 1 296 -15 737 196 0 0 chr15 16528829 16528962 -69166792 - AluJ SINE Alu -169 133 1 3589 142 115 38 chr15 16529045 16530429 -69165325 - pTR5 LTR ERV1 0 2606 1524 28 0 0 0 chr15 16531243 16531271 -69164483 + AT_rich Low_complexity Low_complexity 1 28 0 868 224 0 0 chr15 16531275 16531431 -69164323 - FAM SINE Alu -19 156 1 320 259 142 43 chr15 16531560 16531722 -69164032 + L1MC/D LINE L1 5269 5446 -796 654 159 48 0 chr15 16531740 16531866 -69163888 + FLAM_C SINE Alu 12 143 0 1950 85 0 85 chr15 16531872 16532189 -69163565 + AluY SINE Alu 2 291 -20 343 247 0 0 chr15 16532285 16532370 -69163384 + FRAM SINE Alu 67 151 -15 665 94 19 0 chr15 16532383 16532489 -69163265 + (GGAA)n Simple_repeat Simple_repeat 1 108 0 312 314 39 0 chr15 16532744 16532846 -69162908 - MIR SINE MIR -107 155 50 * 526 279 70 35 chr15 16532830 16533031 -69162723 - MIR SINE MIR -35 227 20 186 254 100 36 chr15 16533787 16533897 -69161857 - L2 LINE L2 -219 3053 2937 249 362 57 0 chr15 16534043 16534148 -69161606 + MER91A DNA MER1_type 84 194 -2 772 219 60 0 chr15 16534193 16534376 -69161378 + MER3 DNA MER1_type 15 208 -1 242 246 62 0 chr15 16534324 16534389 -69161365 - MER3 DNA MER1_type -108 101 33 * 262 325 26 34 chr15 16534404 16534521 -69161233 + L2 LINE L2 3198 3313 0 388 189 78 0 chr15 16534593 16534683 -69161071 - L1MB2 LINE L1 -7 6164 6068 202 200 218 0 chr15 16534692 16534747 -69161007 + L2 LINE L2 3186 3252 -20 2308 90 28 0 chr15 16534923 16535212 -69160542 + AluSx SINE Alu 1 297 -15 281 309 64 9 chr15 16535652 16535762 -69159992 + MIR SINE MIR 140 255 -7 400 270 108 82 chr15 16535895 16536198 -69159556 + L2 LINE L2 2466 2759 -554 1885 139 0 63 chr15 16536198 16536528 -69159226 + AluJb SINE Alu 1 311 0 1583 134 3 49 chr15 16536529 16536834 -69158920 - L1MB8 LINE L1 -9 6169 5879 400 270 108 82 chr15 16536834 16537110 -69158644 + L2 LINE L2 2758 3061 -252 1628 152 55 52 chr15 16537199 16537561 -69158193 + MLT1A1 LTR MaLR 1 363 -2 1609 144 4 38 chr15 16537863 16538164 -69157590 + AluJo SINE Alu 28 319 0 447 203 39 52 chr15 16538171 16538286 -69157468 + L1MC4a LINE L1 5507 5622 -562 337 259 215 19 chr15 16538339 16538544 -69157210 + L1MC4a LINE L1 5719 5963 -1845 29 0 0 0 chr15 16538673 16538702 -69157052 + AT_rich Low_complexity Low_complexity 1 29 0 412 277 45 0 chr15 16538836 16538948 -69156806 + L2 LINE L2 3151 3267 -5 202 259 0 19 chr15 16541768 16541822 -69153932 - L2 LINE L2 -81 3191 3139 232 213 0 0 chr15 16542103 16542150 -69153604 - L2 LINE L2 -210 3062 3016 417 224 0 0 chr15 16542497 16542573 -69153181 + MER21B LTR ERV1 21 96 -767 1117 256 59 92 chr15 16542635 16543212 -69152542 + MER21B LTR ERV1 126 683 -180 3267 189 150 14 chr15 16543212 16543972 -69151782 - MER21B LTR ERV1 0 863 1 245 188 0 87 chr15 16543972 16544041 -69151713 + MER21B LTR ERV1 677 739 -124 361 188 12 30 chr15 16544712 16544735 -69151019 + L1MC4 LINE L1 1982 2004 -6318 2221 114 0 0 chr15 16544735 16545024 -69150730 + AluSx SINE Alu 1 289 -23 361 188 12 30 chr15 16545024 16545087 -69150667 + L1MC4 LINE L1 2004 6999 -1323 699 276 36 78 chr15 16545284 16545617 -69150137 - MLT1I LTR MaLR 0 409 91 378 246 120 28 chr15 16545792 16545934 -69149820 - MER117 DNA MER1_type -40 157 3 248 130 22 0 chr15 16546224 16546270 -69149484 + GA-rich Low_complexity Low_complexity 3 49 0 22 35 0 0 chr15 16546446 16546475 -69149279 + AT_rich Low_complexity Low_complexity 1 29 0 313 307 10 10 chr15 16547878 16547979 -69147775 - L2 LINE L2 -21 3251 3151 381 22 0 0 chr15 16548363 16548409 -69147345 + (TG)n Simple_repeat Simple_repeat 2 47 0 198 0 0 0 chr15 16549283 16549305 -69146449 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 2403 89 0 3 chr15 16549318 16549620 -69146134 + AluSx SINE Alu 1 301 -11 349 295 34 40 chr15 16549635 16549784 -69145970 - MIR3 SINE MIR -26 182 35 538 139 9 61 chr15 16550714 16550758 -69144996 + MLT1F LTR MaLR 434 479 -63 2478 77 0 10 chr15 16550758 16551070 -69144684 - AluSg SINE Alu -1 309 1 538 139 9 61 chr15 16551070 16551140 -69144614 + MLT1F LTR MaLR 479 542 0 187 385 108 0 chr15 16551261 16551409 -69144345 - L2 LINE L2 -655 2659 2496 1045 241 25 4 chr15 16551435 16551671 -69144083 - MIR SINE MIR -2 260 20 328 299 31 0 chr15 16552136 16552233 -69143521 + MIR3 SINE MIR 98 197 -11 318 333 0 10 chr15 16552620 16552719 -69143035 - MIR SINE MIR -66 142 45 834 190 62 22 chr15 16555077 16555256 -69140498 - MER91A DNA MER1_type 0 196 11 309 68 0 0 chr15 16557470 16557514 -69138240 + (CA)n Simple_repeat Simple_repeat 2 45 0 344 206 0 0 chr15 16558858 16558926 -69136828 + MER5A DNA MER1_type 4 71 -118 281 263 25 25 chr15 16558986 16559066 -69136688 - MIR SINE MIR -172 90 11 342 322 20 20 chr15 16559624 16559770 -69135984 + MER5B DNA MER1_type 1 146 -32 426 204 95 7 chr15 16559802 16559939 -69135815 - L1ME4a LINE L1 -6 6115 5967 216 0 0 0 chr15 16561191 16561215 -69134539 + (T)n Simple_repeat Simple_repeat 1 24 0 241 310 150 14 chr15 16561517 16561730 -69134024 - MIR SINE MIR -20 242 1 333 291 85 7 chr15 16562612 16562753 -69133001 + MIR SINE MIR 60 211 -51 2327 101 7 0 chr15 16564534 16564840 -69130914 + AluSp SINE Alu 1 308 -5 310 293 14 0 chr15 16564840 16564937 -69130817 - MIR SINE MIR -85 123 19 445 284 130 0 chr15 16566337 16566499 -69129255 - MIR SINE MIR -44 218 36 2345 76 41 0 chr15 16567187 16567477 -69128277 + AluSx SINE Alu 4 305 -7 546 16 0 0 chr15 16571555 16571618 -69124136 + (CA)n Simple_repeat Simple_repeat 2 64 0 384 22 0 0 chr15 16572595 16572640 -69123114 + (TG)n Simple_repeat Simple_repeat 1 45 0 288 0 0 0 chr15 16573281 16573313 -69122441 + (CA)n Simple_repeat Simple_repeat 2 33 0 23 33 0 0 chr15 16573800 16573830 -69121924 + GC_rich Low_complexity Low_complexity 1 30 0 229 188 29 29 chr15 16573835 16573904 -69121850 + G-rich Low_complexity Low_complexity 4 72 0 334 310 186 0 chr15 16574685 16574798 -69120956 - L2 LINE L2 -13 3259 3126 2026 104 11 0 chr15 16574948 16575250 -69120504 + AluSx SINE Alu 13 317 0 1934 157 0 20 chr15 16576328 16576633 -69119121 - AluJo SINE Alu -13 299 1 543 239 0 0 chr15 16577958 16578125 -69117629 + (TG)n Simple_repeat Simple_repeat 1 167 0 709 149 0 101 chr15 16578643 16578791 -69116963 - FLAM_A SINE Alu 0 133 1 293 281 0 0 chr15 16579416 16579480 -69116274 - L2 LINE L2 -9 3263 3200 1611 194 32 26 chr15 16579759 16580069 -69115685 + AluJo SINE Alu 1 312 0 272 242 0 16 chr15 16580072 16580134 -69115620 + MIR SINE MIR 16 76 -132 2402 90 3 7 chr15 16580239 16580549 -69115205 + AluSp SINE Alu 1 309 -4 298 300 100 15 chr15 16580608 16580738 -69115016 - MIR SINE MIR -3 259 119 2131 126 3 10 chr15 16581505 16581806 -69113948 - AluSx SINE Alu -13 299 1 28 0 0 0 chr15 16582607 16582635 -69113119 + AT_rich Low_complexity Low_complexity 1 28 0 2348 100 0 0 chr15 16582637 16582937 -69112817 + AluSx SINE Alu 1 300 -12 2286 131 0 0 chr15 16583827 16584133 -69111621 + AluSx SINE Alu 1 306 -6 408 282 73 28 chr15 16584135 16584383 -69111371 + MIR SINE MIR 2 260 -2 973 165 0 40 chr15 16584430 16584631 -69111123 + AluJb SINE Alu 136 312 0 2219 103 7 0 chr15 16584721 16585011 -69110743 + AluSg SINE Alu 1 292 -18 1999 168 12 0 chr15 16585040 16585379 -69110375 - MER2 DNA MER2_type 0 344 2 259 312 0 32 chr15 16585387 16585480 -69110274 + MIR SINE MIR 166 255 -7 953 137 6 57 chr15 16585531 16585668 -69110086 + MER5A DNA MER1_type 2 144 -45 429 20 0 0 chr15 16585668 16585718 -69110036 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 1870 171 0 0 chr15 16585718 16586000 -69109754 - AluJb SINE Alu -30 282 1 953 137 6 57 chr15 16586000 16586039 -69109715 + MER5A DNA MER1_type 142 165 -24 635 204 41 70 chr15 16586039 16586102 -69109652 + MER5B DNA MER1_type 1 64 -114 2126 155 0 0 chr15 16586102 16586406 -69109348 + AluSx SINE Alu 1 304 -8 635 204 41 70 chr15 16586406 16586514 -69109240 + MER5B DNA MER1_type 64 167 -11 185 275 38 25 chr15 16587326 16587406 -69108348 + MIR3 SINE MIR 82 162 -46 * 198 312 39 13 chr15 16587387 16587464 -69108290 + MIR SINE MIR 178 256 -6 189 0 0 0 chr15 16588268 16588289 -69107465 + (CAGGG)n Simple_repeat Simple_repeat 1 21 0 1108 98 0 26 chr15 16588531 16588547 -69107207 - AluJb SINE Alu -163 149 134 2377 84 0 0 chr15 16588547 16588846 -69106908 - AluY SINE Alu -12 299 1 1108 98 0 26 chr15 16588846 16588982 -69106772 - AluJb SINE Alu -178 134 1 761 210 11 28 chr15 16589267 16589443 -69106311 - MER20 DNA MER1_type -1 218 46 445 272 170 0 chr15 16589498 16589645 -69106109 + MER5A DNA MER1_type 16 187 -2 247 244 89 0 chr15 16589721 16589811 -69105943 - MER20B DNA MER1_type -17 202 101 1599 141 99 46 chr15 16590362 16590926 -69104828 - SATR1 Satellite Satellite -138 594 1 299 212 5 58 chr15 16591028 16591217 -69104537 + (TTA)n Simple_repeat Simple_repeat 1 179 0 2327 189 101 7 chr15 16591228 16595408 -69100346 - SATR1 Satellite Satellite -1 4573 1 207 235 13 46 chr15 16595491 16595644 -69100110 + (TTA)n Simple_repeat Simple_repeat 1 148 0 319 222 0 72 chr15 16595661 16595855 -69099899 + (TTA)n Simple_repeat Simple_repeat 1 180 0 212 252 7 43 chr15 16595897 16596036 -69099718 + (TTA)n Simple_repeat Simple_repeat 3 136 0 1926 216 102 13 chr15 16596036 16597698 -69098056 + SATR1 Satellite Satellite 1 1809 0 1930 192 105 5 chr15 16597730 16598746 -69097008 + SATR1 Satellite Satellite 1 1118 -96 307 172 35 0 chr15 16598762 16598820 -69096934 - SATR1 Satellite Satellite -269 201 142 239 71 29 86 chr15 16601075 16601145 -69094609 + (CAGGG)n Simple_repeat Simple_repeat 1 66 0 442 145 21 118 chr15 16601221 16601407 -69094347 + (CAGGG)n Simple_repeat Simple_repeat 1 168 0 348 112 35 88 chr15 16601419 16601589 -69094165 + (CAGGG)n Simple_repeat Simple_repeat 1 161 0 773 151 0 43 chr15 16602627 16602766 -69092988 + FLAM_C SINE Alu 1 133 0 1161 165 15 0 chr15 16603026 16603226 -69092528 + MLT1B LTR MaLR 186 388 -2 379 278 9 0 chr15 16603245 16603360 -69092394 + MIR SINE MIR 145 260 -2 333 232 49 0 chr15 16603433 16603515 -69092239 + L2 LINE L2 2248 2333 -981 14398 19 1 0 chr15 16603515 16605265 -69090489 - L1PA4 LINE L1 -814 5332 3581 6391 40 0 1 chr15 16605265 16606053 -69089701 + L1PA4 LINE L1 5348 6145 -10 1927 47 0 4 chr15 16605817 16606053 -69089701 + L1PA4 LINE L1 5911 6175 0 238 33 0 0 chr15 16606053 16606083 -69089671 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 198 0 0 0 chr15 16606096 16606118 -69089636 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 2648 47 0 0 chr15 16606132 16606431 -69089323 + AluY SINE Alu 1 299 -12 1029 213 92 25 chr15 16606453 16606790 -69088964 + MSTD LTR MaLR 1 396 0 1621 258 94 2 chr15 16606796 16607276 -69088478 + L2 LINE L2 2386 2909 -405 284 269 109 19 chr15 16607284 16607440 -69088314 + L1MCc LINE L1 17 186 -6237 1347 271 89 40 chr15 16608001 16608282 -69087472 + L1MCc LINE L1 1269 1535 -5587 566 39 0 13 chr15 16608282 16608360 -69087394 + (TA)n Simple_repeat Simple_repeat 2 78 0 1347 271 89 40 chr15 16608360 16608639 -69087115 + L1MCc LINE L1 1535 1799 -5323 2319 107 0 0 chr15 16608639 16608937 -69086817 - AluSx SINE Alu -13 299 2 1347 271 89 40 chr15 16608937 16609292 -69086462 + L1MCc LINE L1 1799 2444 -4678 636 202 9 0 chr15 16609294 16609580 -69086174 + FLAM_A SINE Alu 12 298 0 1172 246 65 26 chr15 16609583 16609965 -69085789 + L1MCc LINE L1 2438 2834 -4288 1716 175 0 11 chr15 16609970 16610255 -69085499 + AluJo SINE Alu 1 282 -30 282 56 0 0 chr15 16610260 16610296 -69085458 + (CA)n Simple_repeat Simple_repeat 1 36 0 1872 158 3 13 chr15 16610344 16610642 -69085112 + AluJb SINE Alu 1 295 -17 2978 88 21 75 chr15 16611497 16611965 -69083789 - MLT2A1 LTR ERVL 0 444 2 205 286 104 0 chr15 16611970 16612047 -69083707 - MIR3 SINE MIR 0 208 124 378 271 15 53 chr15 16612435 16612568 -69083186 - MER94 DNA DNA -6 128 1 1612 220 54 41 chr15 16613256 16613647 -69082107 + MSTD LTR MaLR 1 396 0 557 229 19 38 chr15 16613984 16614141 -69081613 + MLT1J LTR MaLR 356 509 -2 922 251 182 24 chr15 16614520 16614970 -69080784 + LTR33 LTR ERVL 1 521 0 623 256 108 31 chr15 16614975 16615359 -69080395 - MLT1L LTR MaLR 0 615 109 328 291 44 89 chr15 16615805 16615963 -69079791 + L2 LINE L2 3101 3251 -21 1627 194 0 7 chr15 16615964 16616274 -69079480 + AluJo SINE Alu 1 308 -4 532 245 99 0 chr15 16616329 16616480 -69079274 + MIR3 SINE MIR 36 201 -7 25 31 0 0 chr15 16617435 16617467 -69078287 + AT_rich Low_complexity Low_complexity 1 32 0 1819 176 3 0 chr15 16617590 16617892 -69077862 - AluJb SINE Alu -9 303 1 1892 103 0 109 chr15 16617896 16618095 -69077659 - AluSx SINE Alu -10 302 83 2290 99 3 0 chr15 16618095 16618398 -69077356 - AluSp SINE Alu -9 304 1 2343 94 0 0 chr15 16618400 16618709 -69077045 - AluY SINE Alu -2 309 1 1892 103 0 109 chr15 16618709 16618845 -69076909 - AluSx SINE Alu -230 82 1 216 0 0 0 chr15 16618962 16618986 -69076768 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 784 162 78 0 chr15 16619253 16619395 -69076359 - MER20 DNA MER1_type -1 218 66 432 272 170 0 chr15 16619484 16619631 -69076123 + MER5A DNA MER1_type 16 187 -2 270 230 89 0 chr15 16619707 16619797 -69075957 - MER20B DNA MER1_type -17 202 101 318 336 96 66 chr15 16620544 16620970 -69074784 + L2 LINE L2 2831 3269 -3 2275 148 93 23 chr15 16621464 16621862 -69073892 - MSTB LTR MaLR 0 426 1 2018 109 43 0 chr15 16622120 16622396 -69073358 + AluSx SINE Alu 1 288 -24 2051 91 11 0 chr15 16623596 16623861 -69071893 - AluSx SINE Alu -11 301 34 430 225 185 45 chr15 16624679 16624857 -69070897 + MLT1K LTR MaLR 378 580 -8 741 152 6 76 chr15 16625048 16625206 -69070548 + FRAM SINE Alu 10 156 -20 363 239 70 46 chr15 16625412 16625526 -69070228 - MIR SINE MIR -64 144 33 277 279 23 47 chr15 16626385 16626471 -69069283 + MIR SINE MIR 22 105 -157 1754 259 127 33 chr15 16626794 16627670 -69068084 - L2 LINE L2 -37 3276 2329 182 376 161 0 chr15 16627716 16627809 -69067945 - L2 LINE L2 -8 3264 3157 4820 148 38 24 chr15 16627809 16628181 -69067573 + MER6 DNA MER2_type -7 358 -507 809 144 8 24 chr15 16628181 16628306 -69067448 + FLAM_C SINE Alu 1 123 -10 4820 148 38 24 chr15 16628306 16628767 -69066987 + MER6 DNA MER2_type 358 847 -18 1751 172 7 3 chr15 16629126 16629416 -69066338 - AluJo SINE Alu -20 292 2 929 116 7 43 chr15 16629554 16629692 -69066062 - FLAM_C SINE Alu 0 133 1 22 0 0 0 chr15 16629798 16629820 -69065934 + AT_rich Low_complexity Low_complexity 1 22 0 2012 146 0 10 chr15 16630742 16631043 -69064711 - AluSx SINE Alu -14 298 1 1985 198 123 25 chr15 16631063 16631230 -69064524 - L1ME2 LINE L1 -320 5844 5695 2451 63 0 3 chr15 16631230 16631529 -69064225 - AluY SINE Alu -12 299 2 1985 198 123 25 chr15 16631529 16631891 -69063863 - L1ME2 LINE L1 -469 5695 5263 236 69 0 0 chr15 16631892 16631921 -69063833 - LTR56 LTR ERV1 -57 388 360 257 180 40 0 chr15 16631930 16631980 -69063774 - LTR56 LTR ERV1 -59 386 335 1946 199 41 97 chr15 16631980 16632233 -69063521 - L1ME2 LINE L1 -871 5275 5009 2331 67 37 3 chr15 16632233 16632531 -69063223 - AluSq SINE Alu -5 308 1 1946 199 41 97 chr15 16632531 16632976 -69062778 - L1ME2 LINE L1 -1137 5009 4621 2389 100 3 0 chr15 16632976 16633287 -69062467 + AluSp SINE Alu 1 312 -1 1946 199 41 97 chr15 16633287 16633350 -69062404 - L1ME2 LINE L1 -1525 4621 4556 182 337 109 0 chr15 16633408 16633509 -69062245 + L2 LINE L2 2594 2705 -609 675 214 71 0 chr15 16634239 16634393 -69061361 - MIR SINE MIR -88 174 10 2065 147 3 0 chr15 16634497 16634803 -69060951 - AluSx SINE Alu -5 307 1 1865 161 0 3 chr15 16635829 16636127 -69059627 - AluJo SINE Alu -15 297 1 1655 188 10 7 chr15 16636158 16636461 -69059293 + AluJb SINE Alu 3 306 -6 280 93 0 47 chr15 16636675 16636718 -69059036 + Alu SINE Alu 2 38 -264 29 47 0 0 chr15 16636802 16636845 -69058909 + AT_rich Low_complexity Low_complexity 1 43 0 248 256 0 25 chr15 16636982 16637142 -69058612 + (TAAA)n Simple_repeat Simple_repeat 2 157 0 2526 144 50 10 chr15 16637186 16637603 -69058151 - Tigger2a DNA MER2_type 0 434 1 340 329 98 31 chr15 16637605 16637830 -69057924 + L3 LINE CR1 387 626 -951 2260 102 3 37 chr15 16637884 16638207 -69057547 + AluSx SINE Alu 1 312 0 260 241 0 17 chr15 16638207 16638265 -69057489 + L3 LINE CR1 1520 1576 -1 320 221 78 30 chr15 16638366 16638607 -69057147 + MER5C DNA MER1_type 12 322 -2 22 80 0 0 chr15 16639233 16639283 -69056471 + AT_rich Low_complexity Low_complexity 1 50 0 2346 84 0 3 chr15 16639574 16639872 -69055882 + AluSc SINE Alu 1 297 -12 414 298 81 10 chr15 16640008 16640206 -69055548 + L1ME LINE L1 5612 5823 -298 642 133 0 20 chr15 16640212 16640310 -69055444 + FRAM SINE Alu 72 167 -9 198 300 0 0 chr15 16640533 16640583 -69055171 + L2 LINE L2 2687 2736 -578 403 292 0 18 chr15 16640718 16640831 -69054923 + L2 LINE L2 2927 3037 -235 1850 146 0 32 chr15 16640839 16641147 -69054607 - AluJo SINE Alu -14 298 1 870 205 99 59 chr15 16641684 16641987 -69053767 - L1ME1 LINE L1 -89 6471 6248 * 2514 196 78 21 chr15 16641982 16642649 -69053105 - L1ME1 LINE L1 -855 5685 4981 3995 215 82 10 chr15 16642674 16643783 -69051971 - L1ME1 LINE L1 -2686 3854 2666 1358 152 46 81 chr15 16643814 16644284 -69051470 - L1MB8 LINE L1 -89 6089 5675 403 132 0 15 chr15 16644307 16644375 -69051379 - HY4 scRNA scRNA 0 93 27 3724 211 83 80 chr15 16644375 16644858 -69050896 - L1ME1 LINE L1 -3867 2673 2193 198 0 0 0 chr15 16644858 16644880 -69050874 + (TA)n Simple_repeat Simple_repeat 2 23 0 3724 211 83 80 chr15 16644880 16645138 -69050616 - L1ME1 LINE L1 -4347 2193 1937 2198 116 0 38 chr15 16645138 16645456 -69050298 - AluSx SINE Alu -6 306 1 3724 211 83 80 chr15 16645456 16645527 -69050227 - L1ME1 LINE L1 -4603 1937 1868 2472 77 3 0 chr15 16645527 16645837 -69049917 - AluY SINE Alu 0 311 1 3724 211 83 80 chr15 16645837 16645983 -69049771 - L1ME1 LINE L1 -4672 1868 1724 2315 91 7 0 chr15 16645983 16646280 -69049474 - AluSp SINE Alu -14 299 1 3724 211 83 80 chr15 16646280 16646811 -69048943 - L1ME1 LINE L1 -4816 1724 1202 2173 131 0 0 chr15 16646811 16647109 -69048645 + AluSx SINE Alu 1 298 -14 3724 211 83 80 chr15 16647109 16647471 -69048283 - L1ME1 LINE L1 -5338 1202 843 786 289 51 55 chr15 16647453 16647927 -69047827 - L1ME1 LINE L1 -5573 957 34 * 836 219 32 0 chr15 16649202 16649357 -69046397 - FRAM SINE Alu -15 161 2 449 56 0 0 chr15 16649368 16649422 -69046332 - L1MC1 LINE L1 -15 6318 6265 35 54 0 0 chr15 16649886 16649942 -69045812 + AT_rich Low_complexity Low_complexity 1 56 0 820 109 47 47 chr15 16650640 16650768 -69044986 + AluJo SINE Alu 1 128 -174 2363 79 0 25 chr15 16651317 16651634 -69044120 - AluY SINE Alu -2 309 1 1021 170 6 0 chr15 16651650 16651809 -69043945 + AluJo SINE Alu 134 293 -19 1879 157 27 0 chr15 16651839 16652138 -69043616 + AluJo SINE Alu 6 312 0 2283 85 11 0 chr15 16652268 16652550 -69043204 - AluSg SINE Alu -25 285 1 2057 148 0 0 chr15 16652785 16653088 -69042666 - AluSx SINE Alu -7 305 3 3124 180 24 12 chr15 16653089 16653684 -69042070 - L1MB8 LINE L1 -269 5909 5308 696 131 28 0 chr15 16653685 16653792 -69041962 - Tigger7 DNA MER2_type 0 2487 2378 * 2663 164 95 44 chr15 16653780 16653954 -69041800 - Tigger7 DNA MER2_type -1910 577 413 1608 191 6 31 chr15 16653954 16654273 -69041481 + AluJo SINE Alu 1 311 -1 2663 164 95 44 chr15 16654273 16654519 -69041235 - Tigger7 DNA MER2_type -2074 413 120 2077 137 0 0 chr15 16654519 16654818 -69040936 - AluSx SINE Alu -13 299 1 2663 164 95 44 chr15 16654818 16654944 -69040810 - Tigger7 DNA MER2_type -2367 120 2 3983 182 20 36 chr15 16654945 16655837 -69039917 - L1MB8 LINE L1 -838 5308 4431 4920 178 43 31 chr15 16655842 16656508 -69039246 - L1MC2 LINE L1 -9 6335 5652 1554 191 7 0 chr15 16656508 16656780 -69038974 - AluJo SINE Alu -38 274 1 4920 178 43 31 chr15 16656780 16657083 -69038671 - L1MC2 LINE L1 -692 5652 5354 1293 123 215 58 chr15 16657103 16657257 -69038497 - AluJb SINE Alu 0 302 174 2057 106 53 0 chr15 16657257 16657541 -69038213 + AluSq SINE Alu 1 299 -14 1293 123 215 58 chr15 16657541 16657646 -69038108 - AluJb SINE Alu -128 174 2 1448 237 22 37 chr15 16657679 16658134 -69037620 - L1MB8 LINE L1 -1717 4429 3982 229 351 14 14 chr15 16658135 16658209 -69037545 - MER5A DNA MER1_type -38 151 78 6702 130 7 4 chr15 16658618 16660065 -69035689 - L1PB1 LINE L1 0 6151 4704 270 158 0 3 chr15 16661655 16661755 -69033999 + AluJb SINE Alu 1 132 -170 831 108 0 54 chr15 16661873 16662002 -69033752 - FLAM_C SINE Alu -15 128 7 251 337 27 48 chr15 16662219 16662406 -69033348 + L2 LINE L2 465 647 -2667 712 343 73 25 chr15 16662412 16662442 -69033312 + L2 LINE L2 2782 2809 -504 798 175 32 0 chr15 16662442 16662568 -69033186 + FLAM_A SINE Alu 1 130 -3 712 343 73 25 chr15 16662568 16663019 -69032735 + L2 LINE L2 2809 3290 -23 965 214 117 53 chr15 16665031 16665288 -69030466 + L1MC5 LINE L1 7300 7539 -422 2440 64 0 22 chr15 16665288 16665599 -69030155 - AluY SINE Alu -7 304 1 965 214 117 53 chr15 16665599 16665794 -69029960 + L1MC5 LINE L1 7539 7781 -180 4584 143 43 5 chr15 16666424 16667185 -69028569 + L1MB7 LINE L1 5376 6165 -19 468 188 161 0 chr15 16667651 16667763 -69027991 - L1ME3 LINE L1 -8 6154 6025 213 94 0 0 chr15 16668235 16668267 -69027487 + (TA)n Simple_repeat Simple_repeat 2 33 0 1950 145 3 13 chr15 16668267 16668570 -69027184 - AluJb SINE Alu -12 300 1 2412 80 3 0 chr15 16668575 16668877 -69026877 - AluSq SINE Alu -10 303 1 563 311 70 11 chr15 16668962 16669235 -69026519 + L1ME LINE L1 5460 5748 -373 286 192 0 0 chr15 16670166 16670218 -69025536 - MIR SINE MIR -12 250 199 2320 98 0 0 chr15 16670444 16670740 -69025014 - AluSx SINE Alu -16 296 1 582 196 0 10 chr15 16670953 16671055 -69024699 + AluS SINE Alu 2 102 -210 859 168 0 0 chr15 16671387 16671524 -69024230 + FLAM_C SINE Alu 2 138 -5 328 49 0 0 chr15 16671560 16671601 -69024153 - FRAM/FAM SINE Alu -101 74 34 990 137 0 0 chr15 16671635 16671781 -69023973 + FRAM SINE Alu 1 40 0 29 94 0 0 chr15 16671791 16671876 -69023878 + AT_rich Low_complexity Low_complexity 1 85 0 2250 125 0 0 chr15 16671887 16672184 -69023570 + AluSq SINE Alu 1 297 -16 1647 134 97 0 chr15 16672471 16672740 -69023014 - AluJo SINE Alu -17 295 1 2352 45 0 17 chr15 16672770 16673062 -69022692 + AluY SINE Alu 1 287 -24 639 261 30 49 chr15 16673934 16674137 -69021617 - HAL1 LINE L1 -542 1965 1767 1544 162 40 11 chr15 16674140 16674418 -69021336 - AluJo SINE Alu -8 304 19 1070 240 107 55 chr15 16674441 16675449 -69020305 - HAL1 LINE L1 -1009 1498 311 2046 119 0 38 chr15 16675449 16675767 -69019987 - AluSq SINE Alu -7 306 1 1070 240 107 55 chr15 16675767 16676088 -69019666 - HAL1 LINE L1 -2196 311 8 242 267 95 19 chr15 16676480 16676585 -69019169 - L1MC5 LINE L1 -56 7905 7793 295 250 29 29 chr15 16676712 16676816 -69018938 - MIR SINE MIR -12 250 147 2066 133 0 10 chr15 16677168 16677470 -69018284 - AluJb SINE Alu -13 299 1 461 235 39 60 chr15 16678370 16678561 -69017193 - MER20B DNA MER1_type 0 219 33 2179 109 7 14 chr15 16678820 16679114 -69016640 + AluSp SINE Alu 1 292 -21 2406 80 0 0 chr15 16679120 16679421 -69016333 + AluY SINE Alu 1 301 -10 944 143 0 0 chr15 16679430 16679563 -69016191 + FLAM_C SINE Alu 1 133 0 245 304 25 13 chr15 16679628 16679707 -69016047 - MIR SINE MIR -76 132 53 201 238 48 12 chr15 16679768 16679791 -69015963 + (CATATA)n Simple_repeat Simple_repeat 3 24 -65 1779 172 3 7 chr15 16679791 16680087 -69015667 + AluJb SINE Alu 3 297 -15 201 238 48 12 chr15 16680087 16680147 -69015607 + (CATATA)n Simple_repeat Simple_repeat 24 89 0 275 0 0 28 chr15 16680169 16680205 -69015549 + (TA)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr15 16680205 16680226 -69015528 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr15 16680518 16680568 -69015186 + AT_rich Low_complexity Low_complexity 1 50 0 373 243 198 40 chr15 16681501 16681678 -69014076 + MIR SINE MIR 26 230 -32 2418 89 0 0 chr15 16682538 16682842 -69012912 - AluSg SINE Alu -6 304 1 689 107 48 0 chr15 16683072 16683175 -69012579 + AluSq/x SINE Alu 1 108 -205 1046 216 50 53 chr15 16683930 16684231 -69011523 - AluSq SINE Alu -1 302 3 633 148 123 33 chr15 16684260 16684382 -69011372 + FLAM_A SINE Alu 1 133 0 4936 177 43 31 chr15 16684406 16684709 -69011045 + L1MC2 LINE L1 5354 5652 -692 1554 191 7 0 chr15 16684709 16684981 -69010773 + AluJo SINE Alu 1 274 -38 4936 177 43 31 chr15 16684981 16685647 -69010107 + L1MC2 LINE L1 5652 6335 -9 3983 182 20 36 chr15 16685652 16686544 -69009210 + L1MB8 LINE L1 4431 5308 -838 2663 164 95 44 chr15 16686545 16686671 -69009083 + Tigger7 DNA MER2_type 2 120 -2367 2077 137 0 0 chr15 16686671 16686970 -69008784 + AluSx SINE Alu 1 299 -13 2663 164 95 44 chr15 16686970 16687216 -69008538 + Tigger7 DNA MER2_type 120 413 -2074 1608 191 6 31 chr15 16687216 16687535 -69008219 - AluJo SINE Alu -1 311 1 2663 164 95 44 chr15 16687535 16687709 -69008045 + Tigger7 DNA MER2_type 413 577 -1910 696 131 28 0 chr15 16687697 16687804 -69007950 + Tigger7 DNA MER2_type 2382 2491 0 * 3866 179 26 38 chr15 16687805 16688401 -69007353 + L1MB8 LINE L1 5308 5893 -285 2004 148 0 3 chr15 16688401 16688712 -69007042 + AluSx SINE Alu 3 312 0 3866 179 26 38 chr15 16688712 16688936 -69006818 + L1MB8 LINE L1 5893 6118 -60 1050 138 0 25 chr15 16688979 16689139 -69006615 + AluSg SINE Alu 1 156 -154 316 50 0 0 chr15 16689150 16689190 -69006564 - FRAM/FAM SINE Alu -100 75 36 990 137 0 0 chr15 16689226 16689372 -69006382 + FRAM SINE Alu 1 40 0 29 94 0 0 chr15 16689382 16689467 -69006287 + AT_rich Low_complexity Low_complexity 1 85 0 2250 125 0 0 chr15 16689478 16689775 -69005979 + AluSq SINE Alu 1 297 -16 1875 128 14 21 chr15 16690341 16690629 -69005125 + AluSx SINE Alu 5 290 -22 1474 147 120 4 chr15 16692309 16692568 -69003186 - AluJb SINE Alu -23 289 1 1583 177 10 32 chr15 16692972 16693282 -69002472 + AluJo SINE Alu 1 303 -9 2328 105 7 0 chr15 16694733 16695038 -69000716 + AluSq SINE Alu 1 307 -6 520 256 146 7 chr15 16695079 16695216 -69000538 - MER91A DNA MER1_type -6 190 35 736 198 186 11 chr15 16695495 16695672 -69000082 - AluJo SINE Alu -18 294 87 612 260 55 109 chr15 16695683 16696268 -68999486 + L2 LINE L2 2726 3270 -43 832 137 0 0 chr15 16698178 16698295 -68997459 - AluJb SINE Alu -195 117 1 2282 106 7 0 chr15 16698792 16699093 -68996661 - AluSp SINE Alu -10 303 1 450 257 197 0 chr15 16699233 16699385 -68996369 + MIR SINE MIR 7 188 -74 1875 131 20 67 chr15 16699993 16700101 -68995653 + MER7A DNA MER2_type 10 121 -2917 1677 170 17 14 chr15 16700101 16700395 -68995359 - AluJb SINE Alu -9 303 9 1875 131 20 67 chr15 16700395 16700629 -68995125 + MER7A DNA MER2_type 121 334 -12 2850 10 0 0 chr15 16701298 16701606 -68994148 - AluYa5 SINE Alu -3 308 1 684 250 30 29 chr15 16701772 16702177 -68993577 - MLT1L LTR MaLR -8 607 111 855 200 0 0 chr15 16702272 16702417 -68993337 + FRAM SINE Alu 1 145 -31 431 260 89 0 chr15 16702517 16702640 -68993114 + MIR SINE MIR 30 163 -99 * 445 298 46 0 chr15 16702626 16702757 -68992997 + L2 LINE L2 3177 3313 0 283 289 0 0 chr15 16702759 16702835 -68992919 + MIR SINE MIR 173 248 -14 1734 147 157 10 chr15 16702882 16703175 -68992579 - MER1B DNA MER1_type -1 336 1 384 284 90 26 chr15 16703896 16704051 -68991703 + MIR SINE MIR 63 227 -35 581 172 250 23 chr15 16704181 16704309 -68991445 - AluJo/FRAM SINE Alu -9 293 137 1497 132 180 0 chr15 16704312 16704562 -68991192 - AluJo SINE Alu -7 295 1 405 283 67 28 chr15 16705858 16706038 -68989716 + MIR3 SINE MIR 16 202 -6 281 197 15 30 chr15 16706076 16706142 -68989612 - L2 LINE L2 0 3272 3208 252 213 0 0 chr15 16706447 16706494 -68989260 + MLT1K LTR MaLR 27 73 -515 2126 96 11 0 chr15 16707197 16707505 -68988249 - AluSx SINE Alu 0 311 1 308 332 132 44 chr15 16707544 16707794 -68987960 - L1ME4a LINE L1 -1 6120 5849 212 185 19 37 chr15 16707795 16707849 -68987905 + (CATA)n Simple_repeat Simple_repeat 1 53 0 796 259 23 59 chr15 16707861 16708166 -68987588 - L1ME4a LINE L1 -1984 5824 5531 2271 92 3 0 chr15 16708388 16708681 -68987073 - AluSg SINE Alu -16 294 1 558 297 122 9 chr15 16708827 16709049 -68986705 - MIR SINE MIR -1 261 15 234 128 0 0 chr15 16711455 16711494 -68984260 + (T)n Simple_repeat Simple_repeat 1 39 0 211 186 23 0 chr15 16711916 16711959 -68983795 - L2 LINE L2 -4 3309 3266 196 315 87 11 chr15 16713784 16713876 -68981878 - L2 LINE L2 -32 3240 3142 738 271 45 14 chr15 16714219 16714440 -68981314 + MIR SINE MIR 34 261 -1 252 250 120 0 chr15 16714447 16714539 -68981215 - L2 LINE L2 -150 3122 3020 980 195 5 10 chr15 16714952 16715157 -68980597 + AluSc SINE Alu 1 204 -105 1346 167 0 0 chr15 16716091 16716313 -68979441 - AluSq SINE Alu -91 222 1 418 297 30 30 chr15 16717268 16717433 -68978321 - MIR3 SINE MIR -31 177 13 186 267 13 53 chr15 16718037 16718112 -68977642 - L2 LINE L2 -3011 303 232 184 266 85 32 chr15 16719634 16719728 -68976026 - MIR SINE MIR -69 193 95 184 351 13 13 chr15 16720487 16720564 -68975190 + MIR3 SINE MIR 8 84 -124 1885 161 33 87 chr15 16720569 16720961 -68974793 - MLT1A1 LTR MaLR -3 362 1 641 275 5 26 chr15 16720962 16721151 -68974603 + MIR SINE MIR 78 262 0 350 357 147 0 chr15 16721969 16722112 -68973642 - L3 LINE CR1 -2 1575 1412 26 0 0 0 chr15 16724477 16724503 -68971251 + GC_rich Low_complexity Low_complexity 1 26 0 424 280 88 66 chr15 16725683 16725865 -68969889 + MIR SINE MIR 5 190 -72 299 243 14 14 chr15 16726209 16726283 -68969471 + MIR SINE MIR 46 119 -89 488 240 186 15 chr15 16726288 16726492 -68969262 + MIR SINE MIR 9 247 -15 230 354 110 0 chr15 16727292 16727456 -68968298 + L3 LINE CR1 1309 1490 -87 893 203 0 23 chr15 16727674 16727851 -68967903 + AluJo SINE Alu 120 292 -20 396 278 120 69 chr15 16728227 16728443 -68967311 + MIR SINE MIR 3 229 -33 583 323 85 14 chr15 16728927 16729280 -68966474 - MARNA DNA Mariner -150 436 59 775 246 139 0 chr15 16729950 16730165 -68965589 + MIR SINE MIR 8 252 -10 556 84 0 0 chr15 16731122 16731193 -68964561 + Alu SINE Alu 3 73 -245 2363 94 0 3 chr15 16732157 16732464 -68963290 + AluSx SINE Alu 1 306 -6 249 312 80 0 chr15 16732464 16732602 -68963152 - L1ME4a LINE L1 0 6121 5973 1343 231 65 97 chr15 16732872 16733544 -68962210 - L1M4 LINE L1 -1110 5036 4343 2422 64 0 0 chr15 16733544 16733841 -68961913 - AluY SINE Alu -14 297 1 1343 231 65 97 chr15 16733841 16733912 -68961842 - L1M4 LINE L1 -1803 4343 4322 2206 88 0 3 chr15 16733912 16734196 -68961558 + AluSc SINE Alu 3 285 -24 1343 231 65 97 chr15 16734196 16734303 -68961451 - L1M4 LINE L1 -1824 4322 4213 1925 109 0 11 chr15 16734897 16735197 -68960557 + AluSx SINE Alu 23 312 0 2058 129 0 7 chr15 16736268 16736570 -68959184 - AluSx SINE Alu -12 300 1 339 301 34 23 chr15 16736905 16737081 -68958673 - L1M4 LINE L1 -2369 3777 3600 331 175 48 97 chr15 16737853 16737956 -68957798 - MER53 DNA DNA 0 189 92 190 227 107 13 chr15 16739614 16739689 -68956065 - MIR SINE MIR -116 146 65 2285 66 0 20 chr15 16740029 16740332 -68955422 + AluY SINE Alu 1 297 -14 644 239 165 0 chr15 16740913 16741101 -68954653 - MER20 DNA MER1_type 0 219 1 242 221 163 23 chr15 16741598 16741684 -68954070 + MIR SINE MIR 163 260 -2 2055 115 0 7 chr15 16741687 16741974 -68953780 - AluSx SINE Alu -27 285 1 23 0 0 0 chr15 16741977 16742000 -68953754 + AT_rich Low_complexity Low_complexity 1 23 0 253 280 174 0 chr15 16742981 16743113 -68952641 + MER5A DNA MER1_type 1 155 -34 276 167 175 63 chr15 16743125 16743251 -68952503 - MIR3 SINE MIR -60 148 9 2308 92 0 3 chr15 16747934 16748237 -68947517 - AluSg SINE Alu -7 303 2 328 157 86 70 chr15 16748252 16748377 -68947377 - MIR SINE MIR -63 145 62 360 0 0 0 chr15 16749403 16749443 -68946311 + (TG)n Simple_repeat Simple_repeat 2 41 0 24 32 0 0 chr15 16754694 16754725 -68941029 + GC_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr15 16755246 16755269 -68940485 + GC_rich Low_complexity Low_complexity 1 23 0 2504 52 7 0 chr15 16757220 16757525 -68938229 + AluSc SINE Alu 1 307 -2 200 111 28 0 chr15 16758129 16758165 -68937589 + T-rich Low_complexity Low_complexity 2 38 0 236 253 116 20 chr15 16759202 16759312 -68936442 - MIR SINE MIR -59 149 42 241 254 262 0 chr15 16760980 16761102 -68934652 - MIR3 SINE MIR -40 168 15 493 284 68 35 chr15 16762027 16762270 -68933484 + MIR SINE MIR 7 258 -4 378 0 0 0 chr15 16762588 16762630 -68933124 + (GA)n Simple_repeat Simple_repeat 2 43 0 270 0 0 0 chr15 16762629 16762659 -68933095 + (TG)n Simple_repeat Simple_repeat 2 31 0 * 207 259 9 43 chr15 16763991 16764107 -68931647 + (CCGCG)n Simple_repeat Simple_repeat 1 112 0 508 265 139 5 chr15 16765164 16765365 -68930389 + MIR SINE MIR 27 259 -3 258 81 0 0 chr15 16769230 16769267 -68926487 + (TCC)n Simple_repeat Simple_repeat 1 37 0 593 275 100 15 chr15 16769846 16770046 -68925708 + L2 LINE L2 3027 3243 -29 183 394 24 16 chr15 16772034 16772161 -68923593 + L3 LINE CR1 649 776 -801 389 203 41 16 chr15 16772230 16772353 -68923401 + L1MB7 LINE L1 2424 2549 -3597 * 660 157 48 0 chr15 16772345 16772492 -68923262 + L1MB7 LINE L1 5100 5253 -893 2604 188 74 11 chr15 16772498 16772724 -68923030 + L1MB7 LINE L1 5297 5507 -677 2088 90 0 0 chr15 16772724 16772992 -68922762 + AluSx SINE Alu 32 299 -13 2604 188 74 11 chr15 16772992 16773415 -68922339 + L1MB7 LINE L1 5507 5987 -197 386 288 150 0 chr15 16773926 16774079 -68921675 + MER91A DNA MER1_type 21 196 0 22 0 0 0 chr15 16774090 16774112 -68921642 + AT_rich Low_complexity Low_complexity 1 22 0 211 337 41 10 chr15 16774127 16774225 -68921529 - L3 LINE CR1 -195 1382 1282 261 83 0 0 chr15 16777435 16777471 -68918283 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1524 62 5 0 chr15 16777839 16778034 -68917720 - L1PA8 LINE L1 0 6172 5977 189 74 0 0 chr15 16780649 16780676 -68915078 + (CCCCCA)n Simple_repeat Simple_repeat 4 30 0 2318 52 7 0 chr15 16781095 16781381 -68914373 + AluY SINE Alu 1 288 -23 26 30 0 0 chr15 16781524 16781557 -68914197 + AT_rich Low_complexity Low_complexity 1 33 0 347 358 20 10 chr15 16781797 16781998 -68913756 - L1ME LINE L1 -462 5659 5457 2266 92 3 0 chr15 16782080 16782384 -68913370 + AluSq SINE Alu 1 305 -8 630 219 118 6 chr15 16783285 16783463 -68912291 + MIR SINE MIR 65 262 0 1424 163 47 47 chr15 16784044 16784344 -68911410 + AluSq SINE Alu 3 302 -1 288 197 0 0 chr15 16784972 16785033 -68910721 + Alu SINE Alu 240 300 0 364 378 70 9 chr15 16785038 16785268 -68910486 + L1M4 LINE L1 5136 5379 -767 2115 89 10 10 chr15 16785272 16785563 -68910191 + AluSg SINE Alu 1 291 -19 1850 151 27 0 chr15 16785687 16785979 -68909775 - AluJo SINE Alu 0 312 13 1009 178 0 22 chr15 16785993 16786178 -68909576 - FRAM SINE Alu 0 176 1 1599 68 0 10 chr15 16786192 16786398 -68909356 + AluY SINE Alu 1 204 -107 217 315 213 0 chr15 16786517 16786644 -68909110 + MIR3 SINE MIR 40 193 -15 736 183 0 29 chr15 16788048 16788185 -68907569 - FLAM_A SINE Alu 0 133 1 980 340 31 3 chr15 16788187 16788546 -68907208 + L3 LINE CR1 636 1004 -573 241 313 45 18 chr15 16788561 16788673 -68907081 - MER5A DNA MER1_type -2 187 73 868 159 8 0 chr15 16788700 16788832 -68906922 - AluJo SINE Alu -169 133 1 207 383 16 55 chr15 16788890 16789073 -68906681 + L3 LINE CR1 1015 1190 -387 2107 121 0 0 chr15 16789136 16789426 -68906328 + AluSx SINE Alu 1 290 -22 803 333 55 19 chr15 16789466 16789886 -68905868 - LTR16A LTR ERVL 0 450 16 1354 314 58 36 chr15 16790208 16791285 -68904469 - HERV16 LTR ERVL -611 5153 4007 1229 133 36 0 chr15 16791285 16791481 -68904273 + AluJb SINE Alu 99 301 -11 1151 332 101 26 chr15 16791651 16791967 -68903787 - HERV16 LTR ERVL -2998 1998 1707 6238 185 42 50 chr15 16791967 16793083 -68902671 + Charlie1a DNA MER1_type 1 1125 -1636 1845 150 7 10 chr15 16793083 16793389 -68902365 + AluJb SINE Alu 2 306 -6 6238 185 42 50 chr15 16793389 16793493 -68902261 + Charlie1a DNA MER1_type 1125 1228 -1533 2280 76 0 0 chr15 16793493 16793770 -68901984 + AluSg SINE Alu 3 279 -31 243 0 0 0 chr15 16793774 16793801 -68901953 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6238 185 42 50 chr15 16793801 16793978 -68901776 + Charlie1a DNA MER1_type 1231 1394 -1367 1607 197 0 14 chr15 16793978 16794268 -68901486 - AluJo SINE Alu -26 286 1 6238 185 42 50 chr15 16794268 16794330 -68901424 + Charlie1a DNA MER1_type 1394 1455 0 1151 332 101 26 chr15 16794330 16794955 -68900799 - HERV16 LTR ERVL -3289 1707 872 564 293 44 36 chr15 16795236 16795485 -68900269 + MIR SINE MIR 1 251 -11 343 378 5 47 chr15 16795494 16795687 -68900067 + L3 LINE CR1 1390 1574 -3 475 305 50 5 chr15 16795886 16796086 -68899668 + L3b LINE CR1 1166 1374 -209 2310 41 6 54 chr15 16796244 16796559 -68899195 - AluY SINE Alu -10 301 2 378 0 0 0 chr15 16796905 16796947 -68898807 + (TG)n Simple_repeat Simple_repeat 2 43 0 189 158 32 32 chr15 16798399 16798494 -68897260 + (CGG)n Simple_repeat Simple_repeat 2 96 0 24 53 0 0 chr15 16798670 16798708 -68897046 + GC_rich Low_complexity Low_complexity 1 38 0 31 58 0 0 chr15 16798896 16798948 -68896806 + GC_rich Low_complexity Low_complexity 1 52 0 185 280 252 9 chr15 16803426 16803533 -68892221 + L2 LINE L2 3171 3303 -10 773 193 42 18 chr15 16804927 16805093 -68890661 + MER5A DNA MER1_type 20 189 0 296 132 0 19 chr15 16806437 16806490 -68889264 - L2 LINE L2 -1 3312 3261 512 65 130 0 chr15 16806540 16806617 -68889137 - 5S rRNA rRNA -34 87 1 565 339 39 0 chr15 16806636 16806816 -68888938 - MIR SINE MIR -74 188 2 213 225 36 108 chr15 16808189 16808254 -68887500 + MER5A DNA MER1_type 9 64 -125 1972 144 7 7 chr15 16808254 16808559 -68887195 + AluJb SINE Alu 1 305 -7 213 225 36 108 chr15 16808559 16808604 -68887150 + MER5A DNA MER1_type 64 111 -78 332 282 109 0 chr15 16811919 16812029 -68883725 + MIR3 SINE MIR 33 154 -54 217 264 14 28 chr15 16812192 16812264 -68883490 + MIR3 SINE MIR 117 187 -21 448 212 44 26 chr15 16813016 16813129 -68882625 + MIR SINE MIR 70 184 -78 7837 115 21 24 chr15 16816447 16817225 -68878529 + Tigger3b DNA MER2_type 1 776 -2252 1820 173 7 0 chr15 16817225 16817526 -68878228 - AluJo SINE Alu -9 303 1 7837 115 21 24 chr15 16817526 16817980 -68877774 + Tigger3b DNA MER2_type 776 1230 -1 284 341 73 17 chr15 16819333 16819512 -68876242 + L2 LINE L2 3079 3267 -5 355 308 24 53 chr15 16819869 16820038 -68875716 - MIR3 SINE MIR -35 173 10 246 287 233 33 chr15 16820528 16820678 -68875076 + MIR SINE MIR 65 244 -18 550 202 28 0 chr15 16822808 16822917 -68872837 - MER81 DNA DNA -1 113 2 324 333 54 30 chr15 16824541 16824709 -68871045 + MIR SINE MIR 20 191 -71 2158 135 0 0 chr15 16824869 16825181 -68870573 + AluSx SINE Alu 1 312 0 192 77 0 0 chr15 16825195 16825221 -68870533 + (GGAA)n Simple_repeat Simple_repeat 4 29 0 251 350 83 17 chr15 16825726 16825846 -68869908 + MIR SINE MIR 125 252 -10 360 0 0 0 chr15 16825960 16826000 -68869754 + (CA)n Simple_repeat Simple_repeat 1 40 0 1494 144 79 40 chr15 16826755 16826861 -68868893 + AluJb SINE Alu 1 101 -211 2221 106 0 0 chr15 16826861 16827154 -68868600 - AluSx SINE Alu -19 293 1 1494 144 79 40 chr15 16827154 16827325 -68868429 + AluJb SINE Alu 101 289 -23 333 0 0 0 chr15 16828228 16828265 -68867489 + (TG)n Simple_repeat Simple_repeat 1 37 0 184 222 0 0 chr15 16829163 16829199 -68866555 - MIR SINE MIR -135 73 38 231 346 15 31 chr15 16831944 16832074 -68863680 + L2 LINE L2 2956 3083 -189 321 105 18 0 chr15 16832672 16832729 -68863025 + L1PA16 LINE L1 6092 6149 -17 234 160 0 0 chr15 16832729 16832779 -68862975 - Tigger3(Golem) DNA MER2_type -487 2542 2493 372 43 0 0 chr15 16833351 16833397 -68862357 + (CCG)n Simple_repeat Simple_repeat 3 48 0 183 80 0 0 chr15 16833450 16833475 -68862279 + (CAG)n Simple_repeat Simple_repeat 1 25 0 455 360 28 6 chr15 16836594 16836772 -68858982 - MIR SINE MIR -22 240 59 262 263 67 115 chr15 16837435 16837644 -68858110 + L2 LINE L2 3023 3221 -51 * 1106 292 48 46 chr15 16837641 16838121 -68857633 - L2 LINE L2 -3 3310 2830 184 301 106 35 chr15 16838138 16838215 -68857539 + MIR SINE MIR 110 199 -63 2268 72 0 29 chr15 16838215 16838522 -68857232 + AluY SINE Alu 1 298 -13 184 301 106 35 chr15 16838522 16838557 -68857197 + MIR SINE MIR 199 230 -32 * 214 235 59 0 chr15 16838543 16838594 -68857160 + L2 LINE L2 3209 3262 -10 737 302 17 0 chr15 16841404 16841639 -68854115 + MIR SINE MIR 15 253 -9 312 171 171 13 chr15 16841659 16841735 -68854019 - MIR3 SINE MIR -111 97 10 25 65 0 0 chr15 16843264 16843310 -68852444 + GC_rich Low_complexity Low_complexity 1 46 0 276 304 54 0 chr15 16846313 16846405 -68849349 - MIR SINE MIR -102 160 64 354 349 58 50 chr15 16846940 16847198 -68848556 - L2 LINE L2 -10 3262 3003 210 254 36 0 chr15 16847189 16847244 -68848510 - MIR3 SINE MIR -3 205 149 * 2120 129 0 0 chr15 16848616 16848919 -68846835 + AluSx SINE Alu 1 303 -9 2410 62 3 0 chr15 16848919 16849210 -68846544 + AluY SINE Alu 1 293 -18 646 62 0 0 chr15 16849404 16849484 -68846270 - AluSg/x SINE Alu -12 297 218 1001 79 0 29 chr15 16849484 16849624 -68846130 - AluY SINE Alu -175 136 1 2307 94 0 0 chr15 16849806 16850103 -68845651 - AluY SINE Alu -14 297 1 454 324 77 45 chr15 16850660 16850996 -68844758 + L2 LINE L2 1171 1517 -1797 591 283 19 15 chr15 16851035 16851240 -68844514 + Charlie2 DNA MER1_type 1 206 -2576 45 45 0 0 chr15 16851433 16851499 -68844255 + AT_rich Low_complexity Low_complexity 1 66 0 1622 171 3 75 chr15 16851512 16851657 -68844097 + AluJo SINE Alu 6 117 -195 2287 103 0 0 chr15 16851657 16851969 -68843785 + AluSx SINE Alu 1 312 0 1622 171 3 75 chr15 16851969 16852145 -68843609 + AluJo SINE Alu 117 304 -8 703 204 27 11 chr15 16852176 16852362 -68843392 + Charlie2a DNA MER1_type 1467 1655 -1207 2302 59 35 0 chr15 16852362 16852650 -68843104 + AluY SINE Alu 1 298 -13 2952 243 77 12 chr15 16852653 16853637 -68842117 + L1MEc LINE L1 15 1062 -5334 699 189 20 0 chr15 16853693 16853841 -68841913 + L1MA10 LINE L1 6180 6330 -4 383 227 21 0 chr15 16853856 16853953 -68841801 + L1MD1 LINE L1 6136 6234 -8 * 422 226 39 0 chr15 16853942 16854097 -68841657 + L1MEc LINE L1 1013 1173 -5223 2374 97 0 0 chr15 16854117 16854428 -68841326 + AluSx SINE Alu 1 311 -1 1913 147 3 3 chr15 16854450 16854749 -68841005 + AluJo SINE Alu 1 299 -13 1033 201 0 22 chr15 16854818 16854997 -68840757 + FAM SINE Alu 1 175 0 1101 280 75 113 chr15 16855083 16855660 -68840094 + L2 LINE L2 1583 2180 -1134 2107 122 10 6 chr15 16855660 16855971 -68839783 - AluSx SINE Alu 0 312 1 534 48 0 0 chr15 16855974 16856037 -68839717 - AluSq/x SINE Alu -180 133 71 1101 280 75 113 chr15 16856037 16856214 -68839540 + L2 LINE L2 2182 2372 -942 2285 88 7 3 chr15 16856275 16856580 -68839174 + AluSx SINE Alu 1 306 -6 1688 150 64 0 chr15 16856606 16856900 -68838854 + AluJo SINE Alu 1 311 0 236 328 67 0 chr15 16856908 16857042 -68838712 + L2 LINE L2 2719 2861 -453 448 307 46 81 chr15 16857071 16857239 -68838515 + L2 LINE L2 2954 3126 -187 1638 176 17 7 chr15 16857239 16857534 -68838220 - AluJb SINE Alu -14 298 1 448 307 46 81 chr15 16857534 16857736 -68838018 + L2 LINE L2 3126 3311 -2 2422 44 0 3 chr15 16859412 16859707 -68836047 + AluY SINE Alu 1 294 -17 386 231 0 13 chr15 16860850 16860928 -68834826 - L2 LINE L2 -1 3271 3195 1480 159 103 11 chr15 16861290 16861561 -68834193 + AluJo SINE Alu 1 296 -16 256 333 35 35 chr15 16862568 16862682 -68833072 + MER5B DNA MER1_type 2 115 -63 2057 149 0 0 chr15 16863046 16863342 -68832412 + AluSx SINE Alu 1 296 -16 3680 96 10 25 chr15 16863405 16863740 -68832014 - MER9 LTR ERVK 0 511 185 2235 79 24 3 chr15 16863740 16864030 -68831724 + AluY SINE Alu 1 296 -15 3680 96 10 25 chr15 16864030 16864213 -68831541 - MER9 LTR ERVK -326 185 1 414 291 55 30 chr15 16864263 16864428 -68831326 - MIR SINE MIR -36 226 58 2270 98 0 16 chr15 16864464 16864769 -68830985 - AluSp SINE Alu -11 302 3 2199 141 0 0 chr15 16865937 16866235 -68829519 - AluSx SINE Alu -14 298 1 23 33 0 0 chr15 16866257 16866287 -68829467 + AT_rich Low_complexity Low_complexity 1 30 0 721 142 115 0 chr15 16866288 16866401 -68829353 - FLAM_A SINE Alu -7 126 1 462 150 128 15 chr15 16867424 16867507 -68828247 - L1MD3 LINE L1 -1 7994 7922 1291 71 35 0 chr15 16867507 16867677 -68828077 - L1PA11 LINE L1 0 6174 5999 462 150 128 15 chr15 16867677 16867726 -68828028 - L1MD3 LINE L1 -73 7922 7847 1436 153 0 14 chr15 16867727 16867942 -68827812 + AluJo SINE Alu 1 212 -100 2163 121 0 0 chr15 16867948 16868230 -68827524 - AluSq SINE Alu -30 283 2 302 194 19 29 chr15 16868239 16868342 -68827412 - L1MD3 LINE L1 -129 7866 7765 2343 93 0 7 chr15 16869823 16870123 -68825631 - AluSc SINE Alu -11 298 1 1645 110 121 43 chr15 16870123 16870404 -68825350 - AluSx SINE Alu -9 303 1 919 123 0 29 chr15 16870404 16870542 -68825212 - AluSq/x SINE Alu -178 134 1 2205 130 0 0 chr15 16870977 16871270 -68824484 + AluSg SINE Alu 1 293 -17 211 269 144 19 chr15 16871284 16871388 -68824366 + MIR SINE MIR 146 262 0 829 137 166 52 chr15 16871715 16871902 -68823852 + L1MB4 LINE L1 5917 6133 -47 2268 85 7 0 chr15 16871902 16872223 -68823531 + AluSq SINE Alu 1 323 0 829 137 166 52 chr15 16872223 16872245 -68823509 + L1MB4 LINE L1 6133 6151 -29 237 167 50 0 chr15 16872352 16872412 -68823342 - L1ME2 LINE L1 -202 5962 5900 1874 134 14 21 chr15 16872412 16872703 -68823051 - AluJo SINE Alu -23 289 1 461 174 0 10 chr15 16872728 16872826 -68822928 + FLAM_C SINE Alu 45 141 -2 1080 179 167 48 chr15 16872826 16873077 -68822677 - AluJo SINE Alu -31 281 1 226 222 125 0 chr15 16873078 16873150 -68822604 - L1ME2 LINE L1 -254 5908 5828 388 209 246 0 chr15 16873207 16873317 -68822437 - L1ME2 LINE L1 -505 5659 5523 1391 186 12 16 chr15 16873353 16873600 -68822154 + AluJo SINE Alu 1 246 -66 968 263 34 3 chr15 16873683 16873976 -68821778 - LTR43 LTR ERV1 -125 477 176 290 130 0 0 chr15 16874175 16874221 -68821533 + AluJo SINE Alu 243 288 -14 2390 171 8 59 chr15 16874225 16874733 -68821021 - L1MD3 LINE L1 -6 7989 7508 2037 134 130 54 chr15 16874733 16875157 -68820597 + LTR12 LTR ERV1 9 464 -250 885 180 69 6 chr15 16875165 16875415 -68820339 - L1MD3 LINE L1 -472 7510 7036 1919 164 13 10 chr15 16875444 16875755 -68819999 - AluSx SINE Alu 0 312 1 1305 126 154 11 chr15 16875774 16876029 -68819725 - L1PA15 LINE L1 0 6156 5874 2403 51 0 0 chr15 16876126 16876401 -68819353 - AluY SINE Alu -34 277 3 671 147 0 20 chr15 16876454 16876556 -68819198 + FLAM_A SINE Alu 20 119 -23 711 249 89 0 chr15 16876608 16876845 -68818909 - MIR SINE MIR -4 258 1 844 221 87 74 chr15 16877067 16877149 -68818605 - L1M4 LINE L1 -2457 3689 3610 2227 52 16 55 chr15 16877149 16877458 -68818296 - AluY SINE Alu -5 306 10 844 221 87 74 chr15 16877458 16877504 -68818250 - L1M4 LINE L1 -2536 3610 3566 2449 70 0 10 chr15 16877504 16877817 -68817937 - AluSg SINE Alu 0 310 1 844 221 87 74 chr15 16877817 16878148 -68817606 - L1M4 LINE L1 -2580 3566 3223 743 204 0 8 chr15 16878153 16878285 -68817469 - FLAM_A SINE Alu -2 131 1 1757 197 3 3 chr15 16878300 16878610 -68817144 - AluJo SINE Alu -2 310 1 250 316 11 21 chr15 16878611 16878706 -68817048 + L2 LINE L2 2302 2395 -919 309 233 89 0 chr15 16878763 16878853 -68816901 + L1MC4a LINE L1 5319 5416 -2392 300 243 45 27 chr15 16878850 16878961 -68816793 + L1MC4a LINE L1 5771 5883 -1925 * 1470 135 38 110 chr15 16879031 16879350 -68816404 + AluJo SINE Alu 6 301 -11 2505 69 0 0 chr15 16879385 16879688 -68816066 + AluY SINE Alu 1 303 -8 476 291 39 22 chr15 16879813 16879995 -68815759 - MIR SINE MIR -31 231 47 773 140 0 0 chr15 16880034 16880141 -68815613 + FLAM_C SINE Alu 2 108 -35 28 0 0 0 chr15 16880168 16880196 -68815558 + AT_rich Low_complexity Low_complexity 1 28 0 779 161 8 0 chr15 16880402 16880526 -68815228 - FLAM_C SINE Alu -17 126 2 530 180 0 0 chr15 16880602 16880691 -68815063 + Tigger5 DNA MER2_type 1 89 -2234 * 1191 142 38 46 chr15 16880687 16880831 -68814923 + Tigger5 DNA MER2_type 2085 2228 -95 2403 99 0 0 chr15 16880831 16881133 -68814621 - AluSp SINE Alu -11 302 1 1191 142 38 46 chr15 16881133 16881228 -68814526 + Tigger5 DNA MER2_type 2228 2322 -1 913 129 8 8 chr15 16882487 16882619 -68813135 + AluJo SINE Alu 1 132 -180 2571 74 3 0 chr15 16882828 16883138 -68812616 - AluSp SINE Alu -2 311 1 349 288 112 50 chr15 16883184 16883462 -68812292 - L2 LINE L2 -374 2940 2646 2307 93 7 0 chr15 16884642 16884933 -68810821 + AluSp SINE Alu 1 293 -20 953 194 0 17 chr15 16885222 16885397 -68810357 + AluJo SINE Alu 131 302 -10 2599 62 3 0 chr15 16885802 16886108 -68809646 - AluY SINE Alu -4 307 1 1156 117 0 6 chr15 16889637 16889830 -68805924 - AluSg/x SINE Alu 0 310 132 2129 100 20 17 chr15 16889831 16890131 -68805623 - AluSq SINE Alu -12 301 1 1946 105 86 0 chr15 16893338 16893605 -68802149 + AluSx SINE Alu 1 290 -22 2267 120 0 13 chr15 16893818 16894126 -68801628 + AluSq SINE Alu 1 304 -9 2335 88 17 0 chr15 16894126 16894421 -68801333 + AluSx SINE Alu 1 300 -12 315 219 98 0 chr15 16894423 16894505 -68801249 + MER44D DNA MER2_type 76 165 -540 1766 154 47 6 chr15 16894607 16894926 -68800828 + MER44D DNA MER2_type 219 605 0 343 136 0 17 chr15 16895699 16895758 -68799996 + Tigger4(Zombi) DNA MER2_type 2673 2730 -1 2150 121 10 10 chr15 16895799 16896106 -68799648 + AluSq SINE Alu 1 307 -6 2154 137 0 0 chr15 16896177 16896476 -68799278 + AluSx SINE Alu 1 299 -13 2330 97 0 0 chr15 16896478 16896766 -68798988 + AluSg1 SINE Alu 1 288 -21 2290 92 3 13 chr15 16896768 16897072 -68798682 + AluSg SINE Alu 1 301 -9 254 284 103 32 chr15 16898488 16898643 -68797111 + MER5A DNA MER1_type 6 171 -18 2625 41 0 0 chr15 16899239 16899531 -68796223 - AluY SINE Alu -19 292 1 2455 106 0 0 chr15 16899536 16899848 -68795906 - AluSx SINE Alu 0 312 1 1599 120 30 86 chr15 16899859 16900187 -68795567 - AluJb SINE Alu 0 311 1 319 281 96 28 chr15 16900220 16900398 -68795356 - HAL1 LINE L1 -33 2474 2285 2272 107 0 7 chr15 16900409 16900708 -68795046 - AluSg SINE Alu -13 297 1 353 328 88 39 chr15 16901353 16901661 -68794093 + L2 LINE L2 2991 3313 0 231 247 205 72 chr15 16901670 16901836 -68793918 + L2 LINE L2 3125 3312 -1 243 0 0 0 chr15 16902389 16902416 -68793338 + (TA)n Simple_repeat Simple_repeat 1 27 0 1400 176 81 15 chr15 16902476 16902737 -68793017 - AluJb SINE Alu 0 312 35 1671 151 51 34 chr15 16902761 16903053 -68792701 - AluJb SINE Alu -15 297 1 816 292 24 7 chr15 16903053 16903204 -68792550 - L1ME3A LINE L1 -316 5854 5707 2382 101 3 0 chr15 16903204 16903511 -68792243 + AluSq SINE Alu 1 308 -5 816 292 24 7 chr15 16903511 16903650 -68792104 - L1ME3A LINE L1 -463 5707 5559 227 281 22 22 chr15 16903813 16903902 -68791852 - L2 LINE L2 -9 3263 3175 2462 84 0 0 chr15 16904849 16905147 -68790607 + AluSx SINE Alu 2 299 -13 246 214 79 90 chr15 16906463 16906552 -68789202 + L2 LINE L2 3223 3310 -3 258 316 68 45 chr15 16907140 16907273 -68788481 - L2 LINE L2 -3 3269 3134 218 250 335 37 chr15 16907400 16907672 -68788082 - L2 LINE L2 -531 2783 2431 1226 62 37 0 chr15 16908071 16908232 -68787522 - BC200 scRNA scRNA -33 167 1 595 203 65 0 chr15 16908232 16908355 -68787399 + MIR SINE MIR 63 193 -69 2271 85 0 0 chr15 16908362 16908643 -68787111 + AluY SINE Alu 1 281 -30 1506 186 80 0 chr15 16909123 16909398 -68786356 - AluSx SINE Alu -15 297 1 185 182 0 0 chr15 16910182 16910215 -68785539 - MIR SINE MIR -37 225 193 425 237 72 36 chr15 16910370 16910509 -68785245 + MIR SINE MIR 69 212 -50 213 297 16 16 chr15 16910886 16910950 -68784804 - L2 LINE L2 -4 3268 3205 632 312 34 8 chr15 16911189 16911452 -68784302 - MER102b DNA MER1_type 0 341 72 357 325 33 0 chr15 16912154 16912274 -68783480 + MIR SINE MIR 77 200 -62 27 100 0 0 chr15 16918899 16918989 -68776765 + GC_rich Low_complexity Low_complexity 1 90 0 24 32 0 0 chr15 16919055 16919086 -68776668 + GC_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr15 16919111 16919137 -68776617 + GC_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr15 16919214 16919237 -68776517 + GC_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr15 16919650 16919674 -68776080 + GC_rich Low_complexity Low_complexity 1 24 0 187 329 68 49 chr15 16921035 16921342 -68774412 + L2 LINE L2 2605 2917 -397 198 0 0 0 chr15 16921460 16921482 -68774272 + (TG)n Simple_repeat Simple_repeat 1 22 0 216 0 0 0 chr15 16922607 16922631 -68773123 + (A)n Simple_repeat Simple_repeat 1 24 0 298 359 57 28 chr15 16924598 16924636 -68771118 + L3b LINE CR1 1119 1154 -429 1960 123 32 0 chr15 16924636 16924974 -68770780 + AluSx SINE Alu 1 312 0 298 359 57 28 chr15 16924974 16925183 -68770571 + L3b LINE CR1 1154 1373 -210 186 43 0 0 chr15 16925244 16925267 -68770487 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2288 66 21 3 chr15 16925319 16925607 -68770147 + AluSc SINE Alu 1 293 -16 1266 187 90 4 chr15 16925899 16926166 -68769588 - AluJb SINE Alu -18 294 5 1863 82 114 39 chr15 16926186 16926467 -68769287 - AluSp SINE Alu -11 302 1 462 320 39 0 chr15 16926473 16926626 -68769128 + MIR SINE MIR 104 262 0 2061 126 0 46 chr15 16926869 16927195 -68768559 + AluJo SINE Alu 1 311 -1 214 284 0 74 chr15 16927465 16927546 -68768208 - L2 LINE L2 -86 3227 3153 2300 89 0 19 chr15 16928205 16928521 -68767233 + AluSq SINE Alu 1 310 -3 349 287 183 30 chr15 16928845 16929009 -68766745 - MIR SINE MIR -6 256 68 204 328 205 8 chr15 16930472 16930594 -68765160 - MIR SINE MIR -81 181 36 1617 149 30 98 chr15 16931016 16931351 -68764403 + AluJb SINE Alu 1 312 0 1928 125 0 21 chr15 16933314 16933624 -68762130 - AluY SINE Alu 0 305 2 2110 70 46 20 chr15 16935075 16935377 -68760377 + AluY SINE Alu 1 310 -1 252 135 0 0 chr15 16938332 16938369 -68757385 - MIR SINE MIR -28 234 198 815 212 47 16 chr15 16938380 16938573 -68757181 + MIR SINE MIR 7 205 -57 346 258 172 0 chr15 16938588 16938681 -68757073 - MIR SINE MIR -144 118 10 2158 108 0 7 chr15 16938705 16939002 -68756752 + AluSx SINE Alu 1 295 -17 1338 187 87 14 chr15 16940060 16940349 -68755405 + AluJo SINE Alu 1 310 -2 1684 175 16 25 chr15 16940369 16940684 -68755070 + AluJo SINE Alu 1 312 0 605 257 19 65 chr15 16940684 16940898 -68754856 - MIR SINE MIR -13 249 46 1600 167 51 0 chr15 16945914 16946190 -68749564 + AluJb SINE Alu 9 298 -14 234 361 57 19 chr15 16946476 16946634 -68749120 - MIR SINE MIR -10 252 89 369 313 17 0 chr15 16947269 16947384 -68748370 + MIR SINE MIR 98 214 -48 35 63 0 0 chr15 16948239 16948302 -68747452 + GC_rich Low_complexity Low_complexity 1 63 0 23 0 0 0 chr15 16948365 16948388 -68747366 + GC_rich Low_complexity Low_complexity 1 23 0 2207 100 16 13 chr15 16950856 16951167 -68744587 - AluSx SINE Alu 0 312 1 186 313 15 15 chr15 16951676 16951743 -68744011 + L2 LINE L2 3033 3099 -173 * 255 327 126 61 chr15 16951737 16951951 -68743803 + MIR SINE MIR 29 256 -6 427 191 95 19 chr15 16952252 16952357 -68743397 - MIR SINE MIR -62 200 88 216 0 0 0 chr15 16953033 16953057 -68742697 + (TCTCCC)n Simple_repeat Simple_repeat 2 25 0 2190 103 0 26 chr15 16953058 16953368 -68742386 - AluSg SINE Alu -7 303 2 1344 148 36 14 chr15 16953878 16954101 -68741653 - AluJb SINE Alu 0 312 85 389 296 222 0 chr15 16954181 16954357 -68741397 - MIR SINE MIR 0 262 48 2560 150 21 7 chr15 16954383 16954809 -68740945 - L1PA15 LINE L1 -2 6163 5732 926 290 108 8 chr15 16955032 16955422 -68740332 - LTR16B LTR ERVL -2 462 34 2159 120 7 0 chr15 16955652 16955961 -68739793 - AluSx SINE Alu -1 311 1 2354 83 0 13 chr15 16956929 16957242 -68738512 - AluY SINE Alu -2 309 1 4092 175 44 15 chr15 16958702 16959359 -68736395 - L1MB2 LINE L1 0 6171 5534 691 190 0 0 chr15 16959359 16959480 -68736274 - FLAM_A SINE Alu -12 121 1 4092 175 44 15 chr15 16959480 16960341 -68735413 - L1MB2 LINE L1 -637 5534 4604 443 132 26 0 chr15 16960610 16960686 -68735068 - AluJ/FRAM SINE Alu -7 305 228 2269 104 0 0 chr15 16960687 16960994 -68734760 - AluSc SINE Alu -2 307 1 782 180 13 40 chr15 16960994 16961144 -68734610 - AluJo SINE Alu -166 146 1 1765 149 20 14 chr15 16961405 16961700 -68734054 - AluJo SINE Alu -5 307 11 2174 128 0 3 chr15 16961717 16962021 -68733733 - AluSx SINE Alu -9 303 1 1987 97 56 7 chr15 16962030 16962318 -68733436 - AluY SINE Alu -9 302 1 23 33 0 0 chr15 16962494 16962524 -68733230 + AT_rich Low_complexity Low_complexity 1 30 0 259 263 58 83 chr15 16962970 16963126 -68732628 + MER103 DNA DNA 8 159 -7 357 118 0 0 chr15 16963251 16963302 -68732452 - AluSq/x SINE Alu -176 126 76 1474 164 39 4 chr15 16963318 16963598 -68732156 - AluJb SINE Alu -9 303 14 1995 215 104 6 chr15 16963657 16964178 -68731576 + L1M3f LINE L1 1 572 -4756 1335 155 109 21 chr15 16964296 16964580 -68731174 + AluSq SINE Alu 1 309 -4 809 186 51 6 chr15 16964619 16964775 -68730979 + AluSg/x SINE Alu 129 291 -21 2325 61 0 0 chr15 16964780 16965074 -68730680 + AluY SINE Alu 1 294 -17 1071 150 24 29 chr15 16965116 16965323 -68730431 - AluJo SINE Alu -92 220 15 2091 216 83 6 chr15 16965385 16965914 -68729840 + L1M3f LINE L1 3 572 -4756 1403 150 108 21 chr15 16966031 16966318 -68729436 + AluSx SINE Alu 1 312 0 743 169 35 76 chr15 16966351 16966523 -68729231 + AluJb SINE Alu 129 293 -19 226 158 0 0 chr15 16966526 16966564 -68729190 - Alu SINE Alu -178 124 87 1086 107 17 120 chr15 16966564 16966797 -68728957 - AluJo SINE Alu -91 221 13 1605 208 50 98 chr15 16966854 16967310 -68728444 + L1M3f LINE L1 4 475 -4853 255 62 0 83 chr15 16967310 16967358 -68728396 + AluS SINE Alu 49 92 -210 1605 208 50 98 chr15 16967358 16967454 -68728300 + L1M3f LINE L1 475 574 -4754 2173 88 3 0 chr15 16967589 16967884 -68727870 + AluSx SINE Alu 1 296 -16 1594 166 10 10 chr15 16967975 16968282 -68727472 + AluJb SINE Alu 5 311 -1 2179 90 7 0 chr15 16968303 16968604 -68727150 - AluSp SINE Alu -10 303 1 406 263 44 29 chr15 16968819 16968956 -68726798 + MIR SINE MIR 7 145 -117 1733 217 65 65 chr15 16969121 16969641 -68726113 + MLT2B1 LTR ERVL 1 520 0 1361 185 15 11 chr15 16969645 16969785 -68725969 - AluJb SINE Alu -36 276 138 234 0 0 0 chr15 16969785 16969811 -68725943 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1319 203 7 43 chr15 16969819 16969963 -68725791 + AluJb SINE Alu 1 130 -172 486 0 0 0 chr15 16969963 16970017 -68725737 + (TA)n Simple_repeat Simple_repeat 2 55 0 1319 203 7 43 chr15 16970017 16970173 -68725581 + AluJb SINE Alu 130 290 -12 1361 185 15 11 chr15 16970173 16970288 -68725466 - AluJb SINE Alu -180 132 11 1054 313 69 36 chr15 16971410 16971817 -68723937 + L2 LINE L2 1773 2206 -1108 1360 188 12 59 chr15 16971817 16972137 -68723617 - AluJo SINE Alu -7 305 1 1054 313 69 36 chr15 16972137 16972311 -68723443 + L2 LINE L2 2206 2373 -941 1366 148 31 4 chr15 16972336 16972565 -68723189 - MSTB LTR MaLR 0 426 192 2230 98 3 7 chr15 16972565 16972870 -68722884 - AluSc SINE Alu -5 304 1 447 329 115 22 chr15 16972871 16973524 -68722230 + L2 LINE L2 2376 3096 -176 1807 149 3 19 chr15 16973757 16974065 -68721689 + AluJo SINE Alu 1 303 -9 2542 52 0 0 chr15 16974258 16974563 -68721191 + AluY SINE Alu 1 305 -6 2189 93 0 0 chr15 16975233 16975523 -68720231 - AluSx SINE Alu -22 290 1 491 288 60 90 chr15 16975719 16975986 -68719768 + L2 LINE L2 3014 3272 0 650 268 38 24 chr15 16976729 16976829 -68718925 - MIR SINE MIR -3 259 162 1482 190 23 16 chr15 16976829 16977004 -68718750 - AluJo SINE Alu 0 312 133 2211 104 0 13 chr15 16977004 16977312 -68718442 - AluSx SINE Alu -8 304 1 1482 190 23 16 chr15 16977312 16977446 -68718308 - AluJo SINE Alu -179 133 1 650 268 38 24 chr15 16977446 16977554 -68718200 - MIR SINE MIR -100 162 48 234 292 192 0 chr15 16977605 16977735 -68718019 + MIR SINE MIR 37 191 -71 1800 128 42 3 chr15 16977758 16978070 -68717684 + MER33 DNA MER1_type 1 324 0 396 294 85 17 chr15 16978576 16978753 -68717001 - L3 LINE CR1 -770 807 619 607 252 112 60 chr15 16978892 16979136 -68716618 - MLT1J2 LTR MaLR -11 439 187 2233 95 0 0 chr15 16979136 16979432 -68716322 - AluSg SINE Alu -14 296 1 607 252 112 60 chr15 16979432 16979554 -68716200 - MLT1J2 LTR MaLR -263 187 73 2051 119 0 7 chr15 16979633 16979936 -68715818 - AluSx SINE Alu -11 301 1 217 242 48 48 chr15 16980508 16980570 -68715184 + L2 LINE L2 3201 3262 -10 1800 125 0 38 chr15 16980894 16981183 -68714571 + AluJb SINE Alu 14 291 -21 2204 81 7 0 chr15 16981313 16981598 -68714156 + AluSx SINE Alu 3 289 -23 195 235 0 0 chr15 16981598 16981649 -68714105 + (TA)n Simple_repeat Simple_repeat 2 52 0 2000 83 7 4 chr15 16981775 16982081 -68713673 - AluY SINE Alu 0 308 2 22 56 0 0 chr15 16982183 16982219 -68713535 + AT_rich Low_complexity Low_complexity 1 36 0 673 277 78 0 chr15 16982262 16982504 -68713250 - L1ME3A LINE L1 -339 5831 5571 419 294 176 8 chr15 16983017 16983272 -68712482 + L1ME LINE L1 5522 5819 -302 2190 33 40 30 chr15 16983279 16983579 -68712175 + AluY SINE Alu 1 303 -8 2101 76 20 20 chr15 16983583 16983884 -68711870 + AluSg SINE Alu 1 301 -9 1199 214 20 33 chr15 16983999 16984211 -68711543 + MLT1A1 LTR MaLR 1 209 -156 2520 116 19 8 chr15 16984211 16984582 -68711172 + THE1C LTR MaLR 1 375 0 1199 214 20 33 chr15 16984582 16984672 -68711082 + MLT1A1 LTR MaLR 209 299 -66 424 303 49 22 chr15 16984702 16984887 -68710867 - L1ME LINE L1 -404 5717 5528 305 284 126 32 chr15 16985004 16985194 -68710560 + L2 LINE L2 2989 3196 -117 2033 106 17 0 chr15 16985231 16985523 -68710231 + AluSg SINE Alu 1 297 -13 355 200 163 0 chr15 16985644 16985724 -68710030 + L2 LINE L2 3190 3282 -31 1746 136 68 10 chr15 16985869 16986163 -68709591 + AluJb SINE Alu 1 311 -1 392 262 98 8 chr15 16986165 16986287 -68709467 + L1ME4a LINE L1 5769 5901 -220 1365 169 51 0 chr15 16987008 16987262 -68708492 + AluJo SINE Alu 37 303 -9 1298 109 5 0 chr15 16987371 16987557 -68708197 + AluSg/x SINE Alu 120 307 0 1443 154 30 0 chr15 16987557 16987790 -68707964 - L1PB4 LINE L1 -12 6144 5905 243 97 0 0 chr15 16987795 16987826 -68707928 - U6 snRNA snRNA -5 102 72 2015 119 18 181 chr15 16987826 16987864 -68707890 - MSTB LTR MaLR 0 426 383 1658 133 53 14 chr15 16987864 16988149 -68707605 + AluJo SINE Alu 1 296 -16 2015 119 18 181 chr15 16988149 16988562 -68707192 - MSTB LTR MaLR -43 383 62 2123 107 7 3 chr15 16988562 16988862 -68706892 - AluSx SINE Alu -11 301 1 2015 119 18 181 chr15 16988862 16988911 -68706843 - MSTB LTR MaLR -364 62 7 641 75 0 0 chr15 16988912 16988992 -68706762 + AluY SINE Alu 2 81 -230 297 0 0 0 chr15 16989103 16989136 -68706618 + (A)n Simple_repeat Simple_repeat 1 33 0 3072 122 103 60 chr15 16989303 16989902 -68705852 - MER51A LTR ERV1 -9 625 1 2041 112 3 10 chr15 16989997 16990300 -68705454 - AluSx SINE Alu -11 301 1 1893 67 3 131 chr15 16990436 16990750 -68705004 + LTR12 LTR ERV1 1 274 -440 318 291 10 0 chr15 16990762 16990865 -68704889 + LTR30 LTR ERV1 540 643 -79 615 97 86 0 chr15 16990866 16990959 -68704795 + LTR12 LTR ERV1 481 581 -133 228 67 0 0 chr15 16991030 16991060 -68704694 + (CA)n Simple_repeat Simple_repeat 2 31 0 755 152 120 73 chr15 16991146 16991264 -68704490 + MER3 DNA MER1_type 10 121 -88 2195 97 3 0 chr15 16991264 16991572 -68704182 - AluSg1 SINE Alu 0 309 1 1906 142 0 3 chr15 16991574 16991877 -68703877 - AluSx SINE Alu -10 302 1 1683 142 0 0 chr15 16991881 16992135 -68703619 - AluSx SINE Alu -19 293 40 755 152 120 73 chr15 16992135 16992199 -68703555 + MER3 DNA MER1_type 123 209 0 412 292 53 18 chr15 16992547 16992660 -68703094 + L2 LINE L2 3152 3268 -4 2175 81 14 10 chr15 16992854 16993149 -68702605 + AluSx SINE Alu 1 296 -16 218 293 122 0 chr15 16993417 16993499 -68702255 + L2 LINE L2 3156 3247 -25 2021 114 0 3 chr15 16993802 16994099 -68701655 + AluSx SINE Alu 1 296 -16 2418 77 0 0 chr15 16994099 16994409 -68701345 + AluY SINE Alu 1 310 -1 1341 174 39 63 chr15 16994427 16994678 -68701076 + L1 LINE L1 3978 4221 -1925 188 35 35 0 chr15 16994678 16994707 -68701047 + (TA)n Simple_repeat Simple_repeat 1 30 0 1341 174 39 63 chr15 16994707 16994788 -68700966 + L1 LINE L1 4221 4302 -1844 486 68 55 14 chr15 16994927 16995000 -68700754 - U6 snRNA snRNA -31 76 1 461 196 116 14 chr15 16995004 16995142 -68700612 - L1MC4 LINE L1 0 8042 7891 215 59 0 29 chr15 16995740 16995774 -68699980 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 376 226 94 0 chr15 16996228 16996334 -68699420 + MIR SINE MIR 67 182 -80 2747 133 19 23 chr15 16996643 16997073 -68698681 - MSTC LTR MaLR 0 428 1 2010 125 0 0 chr15 16997103 16997392 -68698362 + AluSx SINE Alu 5 293 -19 1164 185 0 34 chr15 16997394 16997632 -68698122 + AluSg/x SINE Alu 74 303 -7 1913 133 31 0 chr15 16997646 16997939 -68697815 - AluSx SINE Alu -10 302 1 663 272 78 19 chr15 16997958 16998215 -68697539 + L1MC4a LINE L1 5622 5893 -1915 250 271 0 29 chr15 16998218 16998288 -68697466 + L2 LINE L2 3244 3311 -2 1025 72 0 0 chr15 16999117 16999242 -68696512 + AluSq/x SINE Alu 11 135 -177 1940 119 7 7 chr15 16999242 16999536 -68696218 + AluSg1 SINE Alu 1 294 -15 1271 171 67 20 chr15 16999542 16999840 -68695914 + AluJo SINE Alu 1 312 0 3354 186 39 35 chr15 16999842 17000113 -68695641 - L1ME2 LINE L1 -55 6109 5841 2360 42 7 13 chr15 17000113 17000422 -68695332 + AluY SINE Alu 1 307 -4 3354 186 39 35 chr15 17000422 17000919 -68694835 - L1ME2 LINE L1 -323 5841 5338 1871 74 0 0 chr15 17001033 17001264 -68694490 - AluSc SINE Alu -76 233 3 587 80 45 0 chr15 17001266 17001354 -68694400 + L1MA3 LINE L1 6211 6302 -3 370 225 45 0 chr15 17001371 17001460 -68694294 + MIR SINE MIR 141 233 -29 616 257 61 0 chr15 17001970 17002118 -68693636 + MIR SINE MIR 36 192 -70 1934 130 7 16 chr15 17004473 17004815 -68690939 - AluSx SINE Alu 0 312 1 2144 108 0 13 chr15 17005657 17005973 -68689781 + AluSx SINE Alu 1 312 0 484 212 36 123 chr15 17006048 17006207 -68689547 - L1MC5 LINE L1 0 8042 7871 1856 150 3 0 chr15 17006207 17006493 -68689261 - AluSx SINE Alu -25 287 1 484 212 36 123 chr15 17006493 17006739 -68689015 - L1MC5 LINE L1 -171 7871 7697 248 250 10 0 chr15 17006739 17006835 -68688919 + CT-rich Low_complexity Low_complexity 2 98 0 2023 172 13 25 chr15 17006872 17007267 -68688487 - L1MC4 LINE L1 -364 7678 7289 2028 129 0 3 chr15 17007331 17007634 -68688120 - AluSg SINE Alu -8 302 1 197 271 85 0 chr15 17007736 17007795 -68687959 - L2 LINE L2 0 3313 3250 965 312 28 19 chr15 17008045 17008408 -68687346 - MLT1I LTR MaLR -18 391 57 2197 87 13 3 chr15 17008481 17008780 -68686974 - AluSq SINE Alu -11 302 1 642 252 115 53 chr15 17008803 17009237 -68686517 + L1MC5 LINE L1 7330 7809 -152 2164 91 3 0 chr15 17009237 17009523 -68686231 + AluSp SINE Alu 1 287 -26 642 252 115 53 chr15 17009523 17009655 -68686099 + L1MC5 LINE L1 7809 7931 -30 1826 123 3 7 chr15 17009701 17010008 -68685746 + AluSg SINE Alu 1 306 0 602 135 0 19 chr15 17010178 17010282 -68685472 - AluJo/FRAM SINE Alu -2 310 209 * 707 111 127 24 chr15 17010279 17010405 -68685349 + AluJo/FRAM SINE Alu 164 302 -10 746 234 98 96 chr15 17010428 17010696 -68685058 + L1ME4a LINE L1 5558 5824 -297 1802 164 3 3 chr15 17010696 17011000 -68684754 + AluJb SINE Alu 1 304 -8 746 234 98 96 chr15 17011000 17011294 -68684460 + L1ME4a LINE L1 5824 6121 0 474 18 0 0 chr15 17011698 17011753 -68684001 + (TG)n Simple_repeat Simple_repeat 2 56 0 3663 184 118 33 chr15 17012173 17012268 -68683486 - L1MB2 LINE L1 -31 6153 6067 2673 144 21 16 chr15 17012268 17012699 -68683055 - Tigger2a DNA MER2_type -1 433 1 3663 184 118 33 chr15 17012699 17014118 -68681636 - L1MB2 LINE L1 -117 6067 4493 1401 148 12 4 chr15 17014319 17014563 -68681191 - AluSq SINE Alu -2 311 66 471 102 0 0 chr15 17014563 17014622 -68681132 + AluSq/x SINE Alu 64 122 -191 453 138 0 0 chr15 17014620 17014685 -68681069 - AluJ/FLAM SINE Alu -246 66 2 * 1392 124 14 0 chr15 17014727 17014944 -68680810 + AluSp SINE Alu 6 225 -88 194 287 104 61 chr15 17015196 17015311 -68680443 - L2 LINE L2 -467 2847 2728 2157 106 0 0 chr15 17016992 17017284 -68678470 + AluSx SINE Alu 1 292 -20 369 0 0 0 chr15 17019165 17019206 -68676548 + (CA)n Simple_repeat Simple_repeat 1 41 0 2163 109 0 3 chr15 17019680 17019993 -68675761 - AluSx SINE Alu 0 312 1 399 248 195 65 chr15 17020499 17020658 -68675096 + LTR16C LTR ERVL 98 235 -256 2142 86 24 0 chr15 17020658 17020950 -68674804 - AluSx SINE Alu -13 299 1 399 248 195 65 chr15 17020950 17021113 -68674641 + LTR16C LTR ERVL 235 462 -29 1227 271 118 9 chr15 17021368 17021793 -68673961 - L3 LINE CR1 -5 1572 1102 2083 64 67 3 chr15 17021911 17022193 -68673561 + AluY SINE Alu 1 300 -11 1450 171 57 13 chr15 17022200 17022499 -68673255 + AluJb SINE Alu 1 312 0 751 168 74 124 chr15 17022647 17022766 -68672988 + LTR47A LTR ERVL 261 369 -83 2100 113 0 0 chr15 17022766 17023075 -68672679 - AluSg SINE Alu 0 311 3 751 168 74 124 chr15 17023075 17023156 -68672598 + LTR47A LTR ERVL 369 452 0 373 236 121 55 chr15 17023157 17023322 -68672432 - L3 LINE CR1 -471 1106 931 258 202 44 0 chr15 17023468 17023536 -68672218 + MLT1K LTR MaLR 137 249 -339 1770 138 3 17 chr15 17023545 17023836 -68671918 - AluJo SINE Alu -19 293 7 757 338 186 2 chr15 17024142 17024577 -68671177 - L3 LINE CR1 -701 876 362 213 39 0 0 chr15 17024655 17024681 -68671073 + (CA)n Simple_repeat Simple_repeat 1 26 0 3838 227 96 74 chr15 17025220 17025504 -68670250 - L1MCc LINE L1 -4888 1535 1259 1912 149 10 0 chr15 17025504 17025813 -68669941 - AluJb SINE Alu 0 312 1 3838 227 96 74 chr15 17025813 17026033 -68669721 - L1MCc LINE L1 -5164 1259 1045 2001 119 7 3 chr15 17026033 17026327 -68669427 - AluSx SINE Alu -17 295 1 3838 227 96 74 chr15 17026327 17027583 -68668171 - L1MCc LINE L1 -5378 1045 25 277 273 26 0 chr15 17027591 17027668 -68668086 + L2 LINE L2 2586 2664 -650 1056 214 131 32 chr15 17027778 17028293 -68667461 - MLT1G1 LTR MaLR 0 624 1 206 174 0 22 chr15 17028321 17028367 -68667387 + A-rich Low_complexity Low_complexity 2 46 0 470 332 77 38 chr15 17028443 17029018 -68666736 + L2 LINE L2 2678 3272 0 2357 55 0 0 chr15 17030425 17030718 -68665036 + AluY SINE Alu 1 293 -18 1311 141 13 18 chr15 17030935 17031162 -68664592 + AluJb SINE Alu 85 310 -2 1713 169 6 28 chr15 17031195 17031514 -68664240 + AluJb SINE Alu 1 312 0 2218 81 13 10 chr15 17031524 17031834 -68663920 + AluSp SINE Alu 1 311 -2 1014 162 28 11 chr15 17031944 17032123 -68663631 + FRAM SINE Alu 1 173 -3 558 0 0 0 chr15 17033229 17033291 -68662463 + (TG)n Simple_repeat Simple_repeat 2 63 0 1011 211 81 0 chr15 17035265 17035488 -68660266 - MIR SINE MIR 0 262 22 198 356 53 61 chr15 17035681 17035813 -68659941 + L2 LINE L2 3123 3253 -19 2266 100 0 0 chr15 17035876 17036176 -68659578 + AluSx SINE Alu 1 300 -12 1980 100 0 14 chr15 17038113 17038392 -68657362 - AluSx SINE Alu -5 307 33 189 171 0 0 chr15 17038392 17038427 -68657327 + CT-rich Low_complexity Low_complexity 1 35 0 1419 157 32 36 chr15 17038428 17038708 -68657046 - AluJo SINE Alu -33 279 1 6138 115 26 35 chr15 17039116 17039338 -68656416 + L1PB3 LINE L1 4850 5072 -1082 2260 76 0 3 chr15 17039338 17039628 -68656126 - AluSc SINE Alu -20 289 1 6138 115 26 35 chr15 17039628 17040513 -68655241 + L1PB3 LINE L1 5072 5952 -202 2198 98 0 16 chr15 17040513 17040828 -68654926 + AluSg SINE Alu 1 310 0 6138 115 26 35 chr15 17040828 17041019 -68654735 + L1PB3 LINE L1 5952 6143 -11 374 166 0 6 chr15 17041019 17041091 -68654663 + AluS SINE Alu 1 57 -243 2087 88 13 20 chr15 17041619 17041924 -68653830 + AluSq SINE Alu 8 310 -3 1887 157 0 0 chr15 17042401 17042713 -68653041 + AluJb SINE Alu 1 312 0 1650 134 47 0 chr15 17042723 17042998 -68652756 + L1MB3 LINE L1 5881 6168 -15 279 0 0 0 chr15 17042998 17043029 -68652725 + (CA)n Simple_repeat Simple_repeat 2 32 0 2422 58 3 3 chr15 17043129 17043440 -68652314 - AluY SINE Alu 0 311 1 401 247 111 37 chr15 17043607 17043769 -68651985 - MIR SINE MIR -87 175 2 290 283 0 0 chr15 17044801 17044861 -68650893 - L2 LINE L2 -1 3271 3212 2069 105 7 7 chr15 17044981 17045275 -68650479 + AluSx SINE Alu 1 294 -18 431 91 0 0 chr15 17045563 17045629 -68650125 + Alu SINE Alu 246 311 0 251 200 0 0 chr15 17045647 17045687 -68650067 - Alu SINE Alu -262 41 2 1616 103 0 5 chr15 17045714 17045938 -68649816 + AluSx SINE Alu 1 223 -89 1456 185 11 8 chr15 17045950 17046215 -68649539 + AluJb SINE Alu 21 286 -26 300 47 0 0 chr15 17046223 17046266 -68649488 + MER3 DNA MER1_type 145 187 -22 1070 292 90 24 chr15 17046307 17046762 -68648992 - LTR67 LTR ERVL -71 486 2 293 274 0 0 chr15 17046778 17046840 -68648914 - MER5A DNA MER1_type 0 189 128 317 225 0 28 chr15 17046905 17046976 -68648778 - MIR SINE MIR -34 228 160 180 0 0 0 chr15 17047313 17047333 -68648421 + (T)n Simple_repeat Simple_repeat 1 20 0 320 26 0 0 chr15 17047405 17047443 -68648311 + AluY SINE Alu 1 38 -263 1404 86 0 0 chr15 17047446 17047633 -68648121 + AluSg/x SINE Alu 122 308 -2 400 228 61 9 chr15 17047916 17048030 -68647724 + LTR67 LTR ERVL 428 547 -10 515 182 0 0 chr15 17048185 17048284 -68647470 - L1MB7 LINE L1 -8 6176 6078 225 0 0 0 chr15 17049313 17049338 -68646416 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 349 285 99 40 chr15 17049611 17049762 -68645992 - MIR SINE MIR 0 262 103 478 319 43 0 chr15 17050108 17050249 -68645505 - MIR3 SINE MIR -48 160 14 2141 83 31 0 chr15 17050313 17050602 -68645152 - AluSg SINE Alu -12 298 1 472 272 102 5 chr15 17050633 17050839 -68644915 - L1ME4a LINE L1 -53 6068 5843 859 98 0 0 chr15 17051479 17051601 -68644153 + FLAM_C SINE Alu 14 135 -8 2168 63 7 14 chr15 17051601 17051886 -68643868 + AluY SINE Alu 1 283 -28 552 263 31 94 chr15 17052159 17052273 -68643481 - MIR SINE MIR 0 262 167 2277 90 3 3 chr15 17052273 17052585 -68643169 - AluSp SINE Alu -1 312 1 552 263 31 94 chr15 17052585 17052694 -68643060 - MIR SINE MIR -95 167 53 227 149 0 0 chr15 17053751 17053798 -68641956 - L1MB5 LINE L1 0 6174 6128 782 219 6 30 chr15 17053798 17053967 -68641787 + FRAM SINE Alu 1 160 -16 3740 132 65 12 chr15 17053967 17054688 -68641066 - L1MB5 LINE L1 -36 6138 5259 710 142 7 35 chr15 17054702 17054843 -68640911 + L1ME2 LINE L1 5296 5432 -746 * 952 177 44 81 chr15 17054834 17055082 -68640672 + L1MC4a LINE L1 4758 4996 -1150 1121 209 0 0 chr15 17055083 17055294 -68640460 + AluJo SINE Alu 1 211 -101 783 228 5 0 chr15 17055294 17055487 -68640267 + L1MC4a LINE L1 5032 5225 -921 1989 172 24 16 chr15 17055488 17055812 -68639942 - L1M3 LINE L1 -530 5641 5309 1708 155 57 39 chr15 17055812 17056148 -68639606 + MER2 DNA MER2_type 1 342 -2 1989 172 24 16 chr15 17056148 17056330 -68639424 - L1M3 LINE L1 -862 5309 5130 1847 113 0 0 chr15 17056330 17056655 -68639099 - AluSx SINE Alu 0 354 30 347 182 13 0 chr15 17056759 17056836 -68638918 + (TA)n Simple_repeat Simple_repeat 1 78 0 315 250 86 66 chr15 17056883 17057035 -68638719 + L1 LINE L1 5089 5243 -903 2067 104 21 0 chr15 17057053 17057342 -68638412 + AluSg SINE Alu 1 295 -15 1930 226 82 41 chr15 17057363 17057910 -68637844 + L1MC4a LINE L1 5275 5853 -1955 1670 166 10 13 chr15 17057910 17058218 -68637536 + AluJo SINE Alu 1 307 -5 1930 226 82 41 chr15 17058218 17058307 -68637447 + L1MC4a LINE L1 5853 5937 -1871 2135 98 0 3 chr15 17058517 17058804 -68636950 - AluSc SINE Alu -23 286 1 267 169 20 0 chr15 17060091 17060146 -68635608 + L1ME2 LINE L1 5543 5601 -563 719 58 0 0 chr15 17060147 17060234 -68635520 + AluJ/FLAM SINE Alu 2 88 -224 1231 187 180 76 chr15 17060254 17060577 -68635177 + L1ME2 LINE L1 5653 6069 -95 249 88 0 0 chr15 17060577 17060611 -68635143 + MER3 DNA MER1_type 16 49 -160 1231 187 180 76 chr15 17060611 17060715 -68635039 + L1ME2 LINE L1 6069 6161 -3 243 88 0 0 chr15 17060720 17060754 -68635000 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 950 155 42 18 chr15 17060755 17060923 -68634831 - AluJb SINE Alu -34 278 107 1535 110 51 12 chr15 17060941 17061195 -68634559 + L1MA3 LINE L1 5881 6144 -161 2101 101 3 17 chr15 17061195 17061331 -68634423 + AluSx SINE Alu 1 137 -175 2214 93 3 6 chr15 17061331 17061643 -68634111 + AluY SINE Alu 1 311 0 2101 101 3 17 chr15 17061643 17061803 -68633951 + AluSx SINE Alu 137 293 -19 2034 86 7 33 chr15 17061937 17062238 -68633516 - AluSg SINE Alu -17 293 1 33 25 0 0 chr15 17062334 17062374 -68633380 + AT_rich Low_complexity Low_complexity 1 40 0 1599 207 0 6 chr15 17062440 17062754 -68633000 - AluJb SINE Alu 0 312 1 835 132 7 15 chr15 17062754 17062890 -68632864 - AluJo SINE Alu -177 135 1 2117 72 3 21 chr15 17063227 17063518 -68632236 + AluY SINE Alu 1 286 -25 1113 143 12 0 chr15 17063912 17064080 -68631674 + MLT1C LTR MaLR 250 419 -48 1493 163 26 83 chr15 17064084 17064241 -68631513 - AluJo SINE Alu -17 295 163 2261 118 0 7 chr15 17064241 17064545 -68631209 - AluSx SINE Alu -10 302 1 1493 163 26 83 chr15 17064545 17064700 -68631054 - AluJo SINE Alu -149 163 1 2301 122 0 6 chr15 17064958 17065270 -68630484 + AluSx SINE Alu 1 310 -2 1034 114 51 0 chr15 17066391 17066549 -68629205 - AluJ SINE Alu -6 306 141 780 213 0 0 chr15 17066553 17066776 -68628978 - FLAM_C SINE Alu 0 224 2 474 205 90 86 chr15 17066941 17067333 -68628421 - LTR4 LTR ERV1 0 596 112 1499 106 0 0 chr15 17067489 17067688 -68628066 + AluSg/x SINE Alu 102 300 -12 199 317 0 24 chr15 17067968 17068050 -68627704 - L2 LINE L2 -225 3047 2968 489 148 23 23 chr15 17068186 17068274 -68627480 - Charlie4a DNA MER1_type 0 508 421 506 174 183 17 chr15 17068282 17068397 -68627357 - AluJ SINE Alu -177 135 2 1282 201 99 57 chr15 17068397 17068520 -68627234 - Charlie4a DNA MER1_type -1522 439 323 2242 114 0 3 chr15 17068520 17068819 -68626935 - AluSx SINE Alu -14 298 1 1282 201 99 57 chr15 17068819 17069098 -68626656 - Charlie4a DNA MER1_type -1638 323 20 373 254 179 23 chr15 17069508 17069681 -68626073 + MIR SINE MIR 49 248 -14 747 0 0 0 chr15 17070168 17070250 -68625504 - tRNA-Ser-AGC tRNA tRNA -3 82 1 839 211 100 0 chr15 17071982 17072172 -68623582 + MER3 DNA MER1_type 1 209 0 542 203 14 43 chr15 17072260 17072398 -68623356 - MER58C DNA MER1_type -22 193 60 648 115 97 73 chr15 17072443 17072608 -68623146 - MER119 DNA MER1_type -36 547 379 858 167 49 0 chr15 17072610 17072772 -68622982 - AluSg/x SINE Alu -2 308 139 435 259 15 7 chr15 17072776 17072993 -68622761 - FLAM_C SINE Alu 0 224 7 601 192 0 0 chr15 17073551 17073671 -68622083 + AluSp/q SINE Alu 185 304 -9 547 284 8 0 chr15 17073761 17073888 -68621866 - MER119 DNA MER1_type -448 135 8 1908 131 0 73 chr15 17073896 17074224 -68621530 - AluSx SINE Alu -8 304 1 694 183 7 0 chr15 17074541 17074678 -68621076 + AluSg SINE Alu 3 140 -170 387 321 15 30 chr15 17074715 17074849 -68620905 + G-rich Low_complexity Low_complexity 6 137 0 323 270 7 33 chr15 17074862 17075014 -68620740 + G-rich Low_complexity Low_complexity 1 148 0 195 42 0 0 chr15 17075247 17075271 -68620483 + (A)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr15 17075271 17075291 -68620463 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1858 153 3 0 chr15 17075330 17075624 -68620130 - AluJb SINE Alu -17 295 1 411 231 10 0 chr15 17075631 17075735 -68620019 - L1M4 LINE L1 -2228 3918 3814 1165 128 0 0 chr15 17075735 17075899 -68619855 - FAM SINE Alu -4 45 1 360 260 10 0 chr15 17075919 17076015 -68619739 - L1M4 LINE L1 -2318 3828 3732 2145 124 7 0 chr15 17076017 17076316 -68619438 - AluSq SINE Alu -12 301 1 242 222 46 65 chr15 17076452 17076560 -68619194 + AluJb SINE Alu 121 226 -76 1779 154 42 27 chr15 17077072 17077403 -68618351 + MER1B DNA MER1_type 1 336 -1 2125 45 48 31 chr15 17077593 17077884 -68617870 + AluY SINE Alu 1 296 -15 2087 54 88 44 chr15 17077901 17078060 -68617694 - AluY SINE Alu -4 307 156 2092 67 11 25 chr15 17078060 17078343 -68617411 - AluY SINE Alu -1 310 32 2087 54 88 44 chr15 17078343 17078477 -68617277 - AluY SINE Alu -155 156 1 2404 89 7 0 chr15 17078522 17078826 -68616928 - AluSp SINE Alu -7 306 1 2193 47 11 11 chr15 17079131 17079410 -68616344 - L1PA6 LINE L1 -2 6152 5874 21 0 0 0 chr15 17079533 17079554 -68616200 + AT_rich Low_complexity Low_complexity 1 21 0 2690 165 2 11 chr15 17079574 17080029 -68615725 - MER66B LTR ERV1 -35 451 1 329 0 24 0 chr15 17080045 17080086 -68615668 + (CAT)n Simple_repeat Simple_repeat 2 43 0 658 225 0 0 chr15 17080310 17080439 -68615315 - FLAM_A SINE Alu -4 129 1 666 319 46 25 chr15 17080439 17080717 -68615037 + MER102a DNA MER1_type 44 330 0 1765 147 18 7 chr15 17081389 17081674 -68614080 - AluSx SINE Alu -24 288 1 431 326 102 58 chr15 17081674 17082107 -68613647 - MLT1K LTR MaLR -46 542 91 1538 201 10 29 chr15 17082516 17082688 -68613066 - AluJo SINE Alu -5 307 142 1839 162 10 3 chr15 17082688 17082984 -68612770 - AluJb SINE Alu -14 298 1 1538 201 10 29 chr15 17082984 17083124 -68612630 - AluJo SINE Alu -170 142 1 539 178 30 0 chr15 17083136 17083237 -68612517 - U13 snRNA snRNA 0 104 1 3140 115 17 11 chr15 17083617 17084087 -68611667 + L1MB3 LINE L1 5383 5855 -328 1560 121 163 15 chr15 17084116 17084380 -68611374 + AluSg1 SINE Alu 1 303 -6 2253 100 3 10 chr15 17084387 17084686 -68611068 + AluSp SINE Alu 3 299 -14 263 228 139 0 chr15 17084964 17085049 -68610705 + L1 LINE L1 4030 4126 -2020 1901 157 0 23 chr15 17085050 17085355 -68610399 + AluJo SINE Alu 1 298 -14 310 244 130 17 chr15 17085557 17085672 -68610082 + L2 LINE L2 3186 3313 0 207 0 0 0 chr15 17085769 17085792 -68609962 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 847 156 95 22 chr15 17085805 17085984 -68609770 + AluJb SINE Alu 112 303 -9 1763 167 28 11 chr15 17086340 17086627 -68609127 + AluJo SINE Alu 1 292 -20 1935 125 7 4 chr15 17086839 17087119 -68608635 - AluJb SINE Alu -30 282 2 2321 101 0 13 chr15 17087171 17087479 -68608275 - AluSg SINE Alu -6 304 1 25 0 0 0 chr15 17087524 17087549 -68608205 + AT_rich Low_complexity Low_complexity 1 25 0 38 51 0 0 chr15 17087589 17087648 -68608106 + AT_rich Low_complexity Low_complexity 1 59 0 21 71 0 0 chr15 17087770 17087812 -68607942 + AT_rich Low_complexity Low_complexity 1 42 0 23 54 0 0 chr15 17087833 17087870 -68607884 + AT_rich Low_complexity Low_complexity 1 37 0 343 242 11 21 chr15 17087870 17087965 -68607789 + L1MC4a LINE L1 5348 5441 -2367 2084 97 3 24 chr15 17087970 17088108 -68607646 + AluSx SINE Alu 1 140 -184 2287 95 0 16 chr15 17088108 17088414 -68607340 + AluSc SINE Alu 1 301 -8 2084 97 3 24 chr15 17088414 17088605 -68607149 + AluSx SINE Alu 140 324 0 1283 256 11 7 chr15 17088608 17088889 -68606865 + AluSg SINE Alu 1 282 -28 269 456 0 41 chr15 17088890 17089037 -68606717 + G-rich Low_complexity Low_complexity 1 141 0 279 464 0 0 chr15 17089081 17089191 -68606563 + G-rich Low_complexity Low_complexity 1 110 0 853 205 21 39 chr15 17089347 17089581 -68606173 - AluSc SINE Alu -73 236 7 837 281 81 27 chr15 17089641 17090051 -68605703 + L1MC4a LINE L1 5536 5912 -252 23 0 0 0 chr15 17090301 17090324 -68605430 + AT_rich Low_complexity Low_complexity 1 23 0 1173 146 0 0 chr15 17090374 17090539 -68605215 - AluSp SINE Alu -15 298 134 305 24 24 0 chr15 17090539 17090581 -68605173 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 2130 80 0 24 chr15 17090581 17090868 -68604886 - AluY SINE Alu -30 281 2 2271 75 14 10 chr15 17090879 17091171 -68604583 - AluSq SINE Alu -20 293 1 2296 109 0 10 chr15 17091229 17091533 -68604221 - AluSq SINE Alu -12 301 1 1453 154 39 11 chr15 17092061 17092341 -68603413 - AluSx SINE Alu -19 293 6 247 234 188 0 chr15 17093026 17093090 -68602664 - MER5C DNA MER1_type -248 76 1 344 179 0 0 chr15 17093254 17093310 -68602444 - MER66B LTR ERV1 -136 350 295 321 26 0 0 chr15 17093488 17093526 -68602228 + (A)n Simple_repeat Simple_repeat 1 38 0 180 0 0 0 chr15 17094032 17094052 -68601702 + (TAA)n Simple_repeat Simple_repeat 2 21 0 847 106 25 38 chr15 17094173 17094333 -68601421 + L1MA4 LINE L1 6143 6300 0 198 0 0 0 chr15 17094869 17094891 -68600863 + (TA)n Simple_repeat Simple_repeat 2 23 0 1860 166 0 7 chr15 17094916 17095217 -68600537 - AluJo SINE Alu -13 299 1 291 109 0 55 chr15 17095327 17095382 -68600372 - L1ME LINE L1 -664 5498 5447 1972 116 0 64 chr15 17098763 17099106 -68596648 - AluSx SINE Alu 0 312 1 280 242 198 0 chr15 17099117 17099208 -68596546 - L2 LINE L2 -9 3304 3196 2113 127 0 0 chr15 17099220 17099511 -68596243 - AluSx SINE Alu -17 295 5 2186 136 0 0 chr15 17099521 17099830 -68595924 - AluSx SINE Alu -3 309 1 2429 87 0 0 chr15 17099868 17100166 -68595588 + AluY SINE Alu 1 298 -13 22 0 0 0 chr15 17101134 17101156 -68594598 + AT_rich Low_complexity Low_complexity 1 22 0 908 200 6 0 chr15 17101256 17101421 -68594333 + FRAM SINE Alu 1 163 -13 854 177 26 31 chr15 17101998 17102190 -68593564 - AluSg SINE Alu -118 192 2 1316 210 4 7 chr15 17102409 17102690 -68593064 - AluSg SINE Alu -30 280 1 642 233 0 0 chr15 17102935 17103055 -68592699 + FLAM_A SINE Alu 2 121 -12 3125 135 8 38 chr15 17103362 17103727 -68592027 + MER1A DNA MER1_type 49 397 -2305 1921 153 13 7 chr15 17103727 17104035 -68591719 + AluSx SINE Alu 1 310 -2 3125 135 8 38 chr15 17104035 17104165 -68591589 + MER1A DNA MER1_type 397 529 0 421 311 129 14 chr15 17104202 17104371 -68591383 + L1M4 LINE L1 2872 3020 -3126 929 143 0 0 chr15 17104371 17104504 -68591250 - FLAM_C SINE Alu 0 133 1 421 311 129 14 chr15 17104504 17104616 -68591138 + L1M4 LINE L1 3020 3118 -3028 1834 177 3 3 chr15 17104616 17104921 -68590833 + AluJo SINE Alu 1 305 -7 421 311 129 14 chr15 17104921 17104988 -68590766 + L1M4 LINE L1 3118 3261 -2885 653 191 0 0 chr15 17104994 17105104 -68590650 + FLAM_A SINE Alu 1 110 -32 1471 204 21 0 chr15 17105220 17105509 -68590245 + AluJb SINE Alu 5 299 -13 592 138 52 0 chr15 17105510 17105626 -68590128 + L1M4 LINE L1 5195 5316 -830 849 153 0 22 chr15 17105628 17105765 -68589989 + FLAM_C SINE Alu 1 134 -9 281 159 0 43 chr15 17105790 17105859 -68589895 + L1M LINE L1 5293 5358 -820 3365 123 34 24 chr15 17105859 17105937 -68589817 + Tigger3b DNA MER2_type 1 77 -2951 1967 127 63 0 chr15 17105937 17106221 -68589533 + AluSx SINE Alu 1 302 -10 3365 123 34 24 chr15 17106221 17106432 -68589322 + Tigger3b DNA MER2_type 77 285 -2743 1581 193 30 3 chr15 17106432 17106728 -68589026 - AluJo SINE Alu -8 304 1 3365 123 34 24 chr15 17106728 17106972 -68588782 + Tigger3b DNA MER2_type 285 540 -691 2124 117 7 7 chr15 17106973 17107293 -68588461 - AluSq SINE Alu 0 313 3 408 167 11 22 chr15 17107296 17107386 -68588368 + L1MB8 LINE L1 6090 6178 0 1076 141 32 27 chr15 17107950 17108170 -68587584 - AluY SINE Alu -22 289 69 519 130 22 11 chr15 17108279 17108371 -68587383 - AluS SINE Alu -220 93 1 870 201 136 125 chr15 17108680 17108785 -68586969 - L1MC5 LINE L1 -37 7924 7822 1814 148 3 11 chr15 17108785 17109068 -68586686 + AluSx SINE Alu 6 286 -26 870 201 136 125 chr15 17109068 17109712 -68586042 - L1MC5 LINE L1 -139 7822 7167 827 170 7 7 chr15 17109719 17109854 -68585900 + Tigger4(Zombi) DNA MER2_type 1 135 -2596 1729 125 29 4 chr15 17109858 17110130 -68585624 + Tigger4(Zombi) DNA MER2_type 2415 2693 -38 912 161 47 5 chr15 17110130 17110322 -68585432 + AluSx SINE Alu 1 200 -112 468 192 192 16 chr15 17110522 17110647 -68585107 - AluJo SINE Alu -163 149 3 2196 108 3 3 chr15 17110655 17110960 -68584794 - AluSx SINE Alu -1 311 7 2019 102 65 0 chr15 17110973 17111266 -68584488 - AluSp SINE Alu -1 312 1 1497 164 23 59 chr15 17111346 17111477 -68584277 + AluJb SINE Alu 1 135 -177 2300 104 3 0 chr15 17111477 17111784 -68583970 + AluSq SINE Alu 1 308 -5 1497 164 23 59 chr15 17111784 17111956 -68583798 + AluJb SINE Alu 135 293 -19 1290 185 9 0 chr15 17111966 17112182 -68583572 + AluJo SINE Alu 1 218 -94 618 353 12 8 chr15 17112259 17112500 -68583254 - AluSg/x SINE Alu -1 311 70 2235 99 20 0 chr15 17113203 17113495 -68582259 - AluSx SINE Alu -14 298 1 341 244 155 2 chr15 17114247 17114382 -68581372 + MIR SINE MIR 2 152 -62 1698 131 131 6 chr15 17114557 17114877 -68580877 + MER46B DNA MER2_type 1 235 -1 2097 84 0 0 chr15 17115220 17115481 -68580273 + AluY SINE Alu 1 261 -50 395 235 10 31 chr15 17115652 17115750 -68580004 + AluY SINE Alu 202 297 -4 460 208 20 0 chr15 17115803 17115904 -68579850 - L2 LINE L2 -5 3308 3206 207 69 0 0 chr15 17115944 17115973 -68579781 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2189 101 0 0 chr15 17115976 17116254 -68579500 - AluSx SINE Alu -29 283 6 1839 118 80 3 chr15 17116508 17116795 -68578959 - AluY SINE Alu -2 309 1 1270 96 0 45 chr15 17116818 17116995 -68578759 + AluSc SINE Alu 123 291 -18 3300 203 28 76 chr15 17117283 17118301 -68577453 - LTR5 LTR ERVK 0 969 1 47 44 0 0 chr15 17119737 17119805 -68575949 + AT_rich Low_complexity Low_complexity 1 68 0 25 31 0 0 chr15 17119827 17119859 -68575895 + AT_rich Low_complexity Low_complexity 1 32 0 2553 66 0 0 chr15 17119907 17120210 -68575544 + AluY SINE Alu 1 303 -8 2228 79 4 0 chr15 17120536 17120813 -68574941 + AluSx SINE Alu 13 290 -22 180 0 0 0 chr15 17120821 17120841 -68574913 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 362 320 127 14 chr15 17121007 17121354 -68574400 + L2 LINE L2 1867 2252 -1062 207 348 36 36 chr15 17121343 17121455 -68574299 - L2 LINE L2 -8 3264 3153 * 1115 178 5 0 chr15 17121567 17121752 -68574002 + AluJo SINE Alu 86 271 -41 24 0 0 0 chr15 17121754 17121778 -68573976 + AT_rich Low_complexity Low_complexity 1 24 0 495 145 0 174 chr15 17122158 17122440 -68573314 - AluSp SINE Alu -7 306 74 2323 87 3 26 chr15 17122612 17122924 -68572830 - AluSp SINE Alu -8 305 1 2117 120 3 0 chr15 17123094 17123378 -68572376 - AluSx SINE Alu -24 288 4 21 0 0 0 chr15 17123386 17123407 -68572347 + AT_rich Low_complexity Low_complexity 1 21 0 1018 140 7 0 chr15 17123409 17123552 -68572202 - FRAM SINE Alu -30 146 3 287 388 25 6 chr15 17123680 17123840 -68571914 + L2 LINE L2 3106 3268 -4 197 256 11 100 chr15 17123878 17123968 -68571786 + L2 LINE L2 1371 1452 -1862 201 74 0 0 chr15 17126289 17126316 -68569438 + (T)n Simple_repeat Simple_repeat 1 27 0 271 188 16 188 chr15 17126316 17126329 -68569425 - HAL1 LINE L1 -1677 830 816 1902 125 20 14 chr15 17126329 17126625 -68569129 + AluSx SINE Alu 6 303 -9 271 188 16 188 chr15 17126625 17126803 -68568951 - HAL1 LINE L1 -1691 816 672 288 326 116 29 chr15 17126869 17127011 -68568743 + L2 LINE L2 2372 2500 -814 1896 131 14 14 chr15 17127011 17127334 -68568420 - AluSx SINE Alu 0 312 1 288 326 116 29 chr15 17127334 17127467 -68568287 + L2 LINE L2 2500 2671 -643 219 133 0 0 chr15 17127974 17128019 -68567735 + (A)n Simple_repeat Simple_repeat 1 45 0 24 91 0 0 chr15 17128033 17128099 -68567655 + AT_rich Low_complexity Low_complexity 1 66 0 235 409 31 8 chr15 17128264 17128391 -68567363 + L2 LINE L2 3123 3252 -20 2244 93 0 7 chr15 17128836 17129125 -68566629 + AluY SINE Alu 1 287 -24 2045 143 3 0 chr15 17129264 17129557 -68566197 + AluSx SINE Alu 1 294 -18 2289 109 3 10 chr15 17129560 17129872 -68565882 + AluSg SINE Alu 1 310 0 2124 124 3 3 chr15 17129882 17130172 -68565582 + AluSg SINE Alu 2 291 -19 2023 141 0 3 chr15 17130334 17130640 -68565114 + AluSx SINE Alu 3 307 -5 180 351 104 15 chr15 17130744 17130878 -68564876 + L2 LINE L2 1317 1462 -1852 2244 157 72 2 chr15 17131207 17131608 -68564146 - MLT1C LTR MaLR 0 467 39 378 75 0 0 chr15 17131724 17131777 -68563977 + Alu SINE Alu 247 299 -1 2287 61 43 0 chr15 17131993 17132273 -68563481 - AluY SINE Alu -18 293 2 1994 117 0 18 chr15 17132537 17132818 -68562936 - AluSg SINE Alu -34 276 1 804 136 0 0 chr15 17132827 17132937 -68562817 - AluSq/x SINE Alu -202 110 1 570 206 19 0 chr15 17133059 17133166 -68562588 - AluSg/x SINE Alu -21 289 181 258 330 34 17 chr15 17133269 17133388 -68562366 + CT-rich Low_complexity Low_complexity 1 121 0 2239 71 7 14 chr15 17133928 17134223 -68561531 + AluSx SINE Alu 1 293 -19 1918 172 0 0 chr15 17134851 17135154 -68560600 + AluJb SINE Alu 1 303 -9 2454 74 7 0 chr15 17135231 17135529 -68560225 - AluY SINE Alu -10 301 2 22 35 0 0 chr15 17135931 17135960 -68559794 + AT_rich Low_complexity Low_complexity 1 29 0 338 210 12 25 chr15 17136632 17136713 -68559041 + FLAM SINE Alu 44 123 -10 1731 163 10 17 chr15 17136725 17137026 -68558728 + AluSp SINE Alu 1 299 -14 801 164 0 0 chr15 17137026 17137154 -68558600 - AluJo/FLAM SINE Alu -172 130 3 2080 134 3 3 chr15 17137201 17137506 -68558248 - AluSx SINE Alu -7 305 1 192 152 0 0 chr15 17137540 17137573 -68558181 + T-rich Low_complexity Low_complexity 1 33 0 416 169 0 0 chr15 17137574 17137639 -68558115 - AluS SINE Alu -246 66 2 246 32 0 0 chr15 17137694 17137725 -68558029 + (T)n Simple_repeat Simple_repeat 1 31 0 806 188 0 0 chr15 17137741 17137874 -68557880 - FLAM_C SINE Alu 0 133 1 1769 165 34 3 chr15 17138072 17138363 -68557391 - AluJb SINE Alu -12 300 1 228 247 65 11 chr15 17138577 17138670 -68557084 - AluJb SINE Alu -178 124 27 1898 86 0 0 chr15 17138935 17139168 -68556586 + AluSg/x SINE Alu 66 298 -14 1904 81 4 0 chr15 17139370 17139606 -68556148 + AluSg SINE Alu 1 237 -73 2089 127 93 51 chr15 17139920 17140102 -68555652 + MSTC LTR MaLR 1 174 -254 2095 136 0 3 chr15 17140102 17140397 -68555357 + AluSx SINE Alu 1 294 -18 1673 183 6 25 chr15 17140406 17140723 -68555031 + AluJb SINE Alu 1 311 -1 2089 127 93 51 chr15 17140723 17140939 -68554815 + MSTC LTR MaLR 181 426 -2 368 119 17 47 chr15 17140999 17141232 -68554522 - L1MA7 LINE L1 -149 7561 7323 2252 106 0 3 chr15 17141232 17141525 -68554229 - AluSc SINE Alu -17 292 1 368 119 17 47 chr15 17141525 17141873 -68553881 - L1MA7 LINE L1 -387 7323 7028 2344 110 0 0 chr15 17141873 17142182 -68553572 - AluSc SINE Alu 0 309 1 368 119 17 47 chr15 17142182 17142527 -68553227 - L1MA7 LINE L1 -682 7028 6674 1516 175 14 11 chr15 17142536 17142816 -68552938 - AluY SINE Alu -28 283 3 235 330 0 0 chr15 17142828 17142934 -68552820 + A-rich Low_complexity Low_complexity 1 106 0 183 129 0 0 chr15 17142953 17142984 -68552770 + (A)n Simple_repeat Simple_repeat 1 31 0 262 188 27 65 chr15 17143034 17143220 -68552534 + A-rich Low_complexity Low_complexity 2 180 0 30 93 0 0 chr15 17143220 17143263 -68552491 + AT_rich Low_complexity Low_complexity 1 43 0 1522 125 0 13 chr15 17143400 17143624 -68552130 - AluSc SINE Alu -88 221 1 5423 185 138 130 chr15 17143624 17144354 -68551400 - L1MA7 LINE L1 -876 6689 5967 2397 84 3 3 chr15 17144354 17144653 -68551101 - AluY SINE Alu -12 299 1 5423 185 138 130 chr15 17144653 17144811 -68550943 - L1MA7 LINE L1 -1598 5967 5812 2284 111 0 7 chr15 17144811 17145118 -68550636 + AluSg SINE Alu 1 305 -5 1171 125 0 0 chr15 17145124 17145284 -68550470 + AluSg/x SINE Alu 138 297 -13 5423 185 138 130 chr15 17145284 17145583 -68550171 - L1MA7 LINE L1 -1757 5808 5513 327 221 0 29 chr15 17145583 17145651 -68550103 + AluS SINE Alu 1 66 -237 1344 121 0 0 chr15 17145651 17145825 -68549929 - AluSx SINE Alu -137 175 2 5423 185 138 130 chr15 17145825 17146205 -68549549 - L1MA7 LINE L1 -2052 5513 5138 2442 89 0 6 chr15 17146205 17146518 -68549236 - AluY SINE Alu 0 311 1 5423 185 138 130 chr15 17146518 17146706 -68549048 - L1MA7 LINE L1 -2427 5138 4953 2197 105 24 0 chr15 17146706 17147000 -68548754 - AluSx SINE Alu -9 303 3 5423 185 138 130 chr15 17147000 17148287 -68547467 - L1MA7 LINE L1 -2612 4953 3678 2294 116 0 0 chr15 17148287 17148589 -68547165 + AluSg1 SINE Alu 1 302 -7 5423 185 138 130 chr15 17148589 17148635 -68547119 - L1MA7 LINE L1 -3887 3678 3634 1649 154 7 4 chr15 17148635 17148907 -68546847 - AluSq SINE Alu -38 275 3 5423 185 138 130 chr15 17148907 17148977 -68546777 - L1MA7 LINE L1 -3931 3634 3087 594 105 0 0 chr15 17148961 17149047 -68546707 - L1 LINE L1 -3783 2363 2278 * 5604 116 48 46 chr15 17149059 17150443 -68545311 - pTR5 LTR ERV1 -143 2295 743 2990 137 146 76 chr15 17150491 17150559 -68545195 - L1MA7 LINE L1 -4463 3102 3040 2254 111 20 0 chr15 17150559 17150865 -68544889 - AluSx SINE Alu 0 312 1 2990 137 146 76 chr15 17150865 17151342 -68544412 - L1MA7 LINE L1 -4525 3040 2598 609 414 29 83 chr15 17151342 17151654 -68544100 - AluY SINE Alu -6 295 1 2990 137 146 76 chr15 17151654 17152297 -68543457 - L1MA7 LINE L1 -4967 2598 2001 2489 71 0 0 chr15 17152297 17152594 -68543160 - AluY SINE Alu -14 297 1 2990 137 146 76 chr15 17152594 17152610 -68543144 - L1MA7 LINE L1 -5564 2001 1988 2248 113 3 7 chr15 17152610 17152920 -68542834 - AluSx SINE Alu -3 309 1 2990 137 146 76 chr15 17152920 17153083 -68542671 - L1MA7 LINE L1 -5577 1988 1411 2385 177 132 12 chr15 17153067 17153576 -68542178 - L1MA7 LINE L1 -6987 578 9 * 3926 123 38 0 chr15 17153568 17154193 -68541561 - L1M1 LINE L1 -4499 3066 2418 582 205 6 12 chr15 17154194 17154355 -68541399 + CT-rich Low_complexity Low_complexity 1 160 0 2373 90 3 3 chr15 17154358 17154659 -68541095 - AluSp SINE Alu -10 303 3 1933 156 10 0 chr15 17154661 17154956 -68540798 - AluSx SINE Alu -14 298 1 301 112 0 12 chr15 17155011 17155068 -68540686 + AluSp SINE Alu 120 170 -133 1765 98 17 0 chr15 17155068 17155304 -68540450 + HERVK11 LTR ERVK 6528 6767 -1186 1125 199 17 21 chr15 17155289 17155530 -68540224 + HERVK11 LTR ERVK 6957 7196 -757 * 223 272 40 24 chr15 17155640 17155765 -68539989 + G-rich Low_complexity Low_complexity 4 130 0 924 122 0 8 chr15 17156071 17156202 -68539552 - AluSq/x SINE Alu -183 130 1 12069 143 34 8 chr15 17156202 17156290 -68539464 - L1M1 LINE L1 -5133 2432 2348 9661 25 7 234 chr15 17156290 17158074 -68537680 + SVA Other Other 7 1384 -2 12069 143 34 8 chr15 17158074 17159855 -68535899 - L1M1 LINE L1 -5217 2348 514 6433 103 8 19 chr15 17159893 17160865 -68534889 - MER11C LTR ERVK -14 1057 4 7721 56 0 1 chr15 17160867 17161791 -68533963 - HERVK11 LTR ERVK 0 7953 7031 951 104 0 15 chr15 17162083 17162217 -68533537 - FLAM_C SINE Alu -5 138 7 1917 124 18 3 chr15 17162412 17162694 -68533060 - AluSx SINE Alu -26 286 1 444 212 0 10 chr15 17163245 17163344 -68532410 - AluJb SINE Alu -91 221 124 2126 109 7 14 chr15 17164225 17164518 -68531236 - AluSx SINE Alu -21 291 1 231 114 0 0 chr15 17164567 17164602 -68531152 + (T)n Simple_repeat Simple_repeat 1 35 0 728 122 9 0 chr15 17164610 17164717 -68531037 - AluSg/x SINE Alu -4 305 198 2301 101 10 0 chr15 17165087 17165394 -68530360 - AluSp SINE Alu -3 310 1 696 218 0 0 chr15 17165404 17165537 -68530217 - FLAM_C SINE Alu 0 133 1 282 286 0 0 chr15 17166671 17166734 -68529020 - MER2 DNA MER2_type 0 345 283 793 139 0 0 chr15 17166756 17166871 -68528883 - MER2 DNA MER2_type -210 135 21 2801 46 32 0 chr15 17167085 17167482 -68528272 - MER11B LTR ERVK -733 503 1 8302 57 4 1 chr15 17167482 17168476 -68527278 - HERVK11 LTR ERVK 0 7953 6957 1757 98 17 0 chr15 17168461 17168697 -68527057 - HERVK11 LTR ERVK -1186 6767 6528 * 301 112 0 12 chr15 17168697 17168754 -68527000 - AluSp SINE Alu -133 170 120 1978 166 0 0 chr15 17168809 17169117 -68526637 + AluSq SINE Alu 1 308 -5 2660 185 43 2 chr15 17169170 17169657 -68526097 + L1M1 LINE L1 14 520 -7045 1831 38 0 0 chr15 17169675 17169886 -68525868 + HERVK11 LTR ERVK 6320 6530 -1423 * 5293 47 5 2 chr15 17169882 17170521 -68525233 - HERVK11 LTR ERVK -1617 6336 5696 412 83 17 0 chr15 17170521 17170581 -68525173 - L1MA7 LINE L1 -97 6194 6134 263 203 13 0 chr15 17170867 17170946 -68524808 + (TA)n Simple_repeat Simple_repeat 1 80 0 1574 173 0 97 chr15 17170947 17171144 -68524610 - AluJo SINE Alu -11 301 147 2297 83 13 3 chr15 17171144 17171446 -68524308 + AluSc SINE Alu 1 305 -4 1574 173 0 97 chr15 17171446 17171577 -68524177 - AluJo SINE Alu -165 147 5 26 30 0 0 chr15 17171800 17171833 -68523921 + AT_rich Low_complexity Low_complexity 1 33 0 2056 98 87 0 chr15 17171956 17172242 -68523512 - AluSx SINE Alu 0 312 2 1667 149 59 43 chr15 17172646 17172968 -68522786 + MER1B DNA MER1_type 1 327 -12 193 320 93 10 chr15 17172979 17173076 -68522678 + L2 LINE L2 2580 2684 -630 708 169 25 0 chr15 17173155 17173273 -68522481 + AluJo/FLAM SINE Alu 9 129 -183 2140 96 3 7 chr15 17173276 17173599 -68522155 + AluSx SINE Alu 1 322 0 2383 75 3 0 chr15 17173693 17173986 -68521768 - AluSg1 SINE Alu -15 294 1 1855 123 3 21 chr15 17174018 17174303 -68521451 - AluJo SINE Alu -26 286 7 1921 124 18 3 chr15 17174498 17174780 -68520974 - AluSx SINE Alu -26 286 1 529 165 0 0 chr15 17175324 17175421 -68520333 - FLAM_A SINE Alu -45 97 1 2341 68 0 10 chr15 17176316 17176610 -68519144 - AluSx SINE Alu -21 291 1 192 40 0 0 chr15 17176612 17176637 -68519117 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 461 260 81 73 chr15 17176637 17176725 -68519029 - L1ME3A LINE L1 -3 6167 6081 1563 149 30 8 chr15 17176725 17176993 -68518761 + AluJb SINE Alu 1 274 -38 461 260 81 73 chr15 17176993 17177150 -68518604 - L1ME3A LINE L1 -89 6081 5920 823 207 92 48 chr15 17177154 17177507 -68518247 - L1ME3A LINE L1 -621 5543 5207 242 29 29 0 chr15 17177507 17177542 -68518212 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2282 83 3 14 chr15 17177546 17177834 -68517920 - AluSp SINE Alu -26 287 3 823 207 92 48 chr15 17177834 17177943 -68517811 - L1ME3A LINE L1 -959 5205 5060 2114 115 18 96 chr15 17177955 17178003 -68517751 - L1MA6 LINE L1 -1 6299 6249 2245 50 96 4 chr15 17178003 17178283 -68517471 - AluY SINE Alu -5 306 1 2114 115 18 96 chr15 17178283 17178616 -68517138 - L1MA6 LINE L1 -51 6249 5954 2206 109 3 0 chr15 17178616 17178918 -68516836 - AluSc SINE Alu -6 303 1 2114 115 18 96 chr15 17178918 17178971 -68516783 - L1MA6 LINE L1 -346 5954 5898 207 0 0 0 chr15 17179570 17179593 -68516161 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2317 82 4 0 chr15 17179595 17179875 -68515879 - AluSp SINE Alu -32 281 1 696 218 0 0 chr15 17179885 17180018 -68515736 - FLAM_C SINE Alu 0 133 1 282 286 0 0 chr15 17181152 17181215 -68514539 - MER2 DNA MER2_type 0 345 283 793 139 0 0 chr15 17181237 17181352 -68514402 - MER2 DNA MER2_type -210 135 21 1394 150 187 19 chr15 17181767 17182061 -68513693 - AluSx SINE Alu 0 339 1 1869 171 10 13 chr15 17182205 17182514 -68513240 - AluSc SINE Alu -1 308 1 21 0 0 0 chr15 17182722 17182743 -68513011 + AT_rich Low_complexity Low_complexity 1 21 0 1953 145 0 16 chr15 17183172 17183475 -68512279 - AluSx SINE Alu -10 302 5 841 142 47 83 chr15 17183478 17183647 -68512107 - FRAM SINE Alu -13 163 1 253 365 44 25 chr15 17183762 17183921 -68511833 + L2 LINE L2 3106 3267 -5 692 125 0 0 chr15 17183940 17184036 -68511718 - AluS SINE Alu -216 97 2 1845 247 78 6 chr15 17184125 17184564 -68511190 - L1M4 LINE L1 -2629 3517 3111 1521 173 6 77 chr15 17184564 17184730 -68511024 - AluJo SINE Alu -11 301 125 207 0 0 0 chr15 17184730 17184753 -68511001 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2054 92 33 0 chr15 17184753 17185025 -68510729 - AluSg SINE Alu -29 281 1 2057 129 3 0 chr15 17185025 17185320 -68510434 - AluSg SINE Alu -14 296 1 1521 173 6 77 chr15 17185320 17185332 -68510422 - AluJo SINE Alu -185 127 116 2286 114 0 0 chr15 17185332 17185629 -68510125 - AluSg SINE Alu -13 297 1 1521 173 6 77 chr15 17185629 17185771 -68509983 - AluJo SINE Alu -196 116 1 1845 247 78 6 chr15 17185771 17185955 -68509799 - L1M4 LINE L1 -3035 3111 2849 2354 63 0 7 chr15 17186258 17186567 -68509187 - AluY SINE Alu 0 307 1 970 190 78 58 chr15 17187076 17187371 -68508383 + AluSp SINE Alu 1 301 -2 1468 171 24 44 chr15 17188270 17188568 -68507186 - AluJo SINE Alu -20 292 1 2330 116 0 0 chr15 17188577 17188878 -68506876 - AluSx SINE Alu -11 301 1 239 338 0 0 chr15 17188880 17188951 -68506803 + L1MD2 LINE L1 6201 6271 -88 2050 147 0 0 chr15 17188988 17189287 -68506467 - AluSg SINE Alu -11 299 1 1539 115 5 5 chr15 17189287 17189504 -68506250 - AluSg/x SINE Alu -8 302 85 2193 105 14 0 chr15 17189504 17189799 -68505955 - AluSx SINE Alu -12 300 1 1746 158 37 0 chr15 17189844 17190145 -68505609 - AluJb SINE Alu 0 311 1 1003 161 17 0 chr15 17190643 17190817 -68504937 - AluSg/x SINE Alu -7 303 127 276 375 0 42 chr15 17191120 17191240 -68504514 + polypurine Low_complexity Low_complexity 1 115 0 223 274 21 32 chr15 17191245 17191340 -68504414 + GA-rich Low_complexity Low_complexity 3 96 0 964 227 38 14 chr15 17191504 17191795 -68503959 - AluSq SINE Alu -5 298 1 333 338 139 20 chr15 17191801 17192002 -68503752 + L2 LINE L2 1007 1231 -2083 613 90 0 0 chr15 17192004 17192082 -68503672 + AluSx SINE Alu 2 79 -233 2744 52 0 0 chr15 17192083 17192393 -68503361 + AluY SINE Alu 1 310 -1 1889 100 0 0 chr15 17192409 17192650 -68503104 + AluSx SINE Alu 66 306 -4 378 313 145 4 chr15 17192855 17193082 -68502672 + L2 LINE L2 1466 1724 -1590 189 277 158 0 chr15 17193123 17193224 -68502530 - MIR SINE MIR -128 134 18 800 155 9 0 chr15 17193236 17193352 -68502402 + AluJ SINE Alu 1 117 -195 676 206 8 8 chr15 17193384 17193515 -68502239 + AluJ SINE Alu 118 248 -64 239 270 95 0 chr15 17193515 17193589 -68502165 + L2 LINE L2 3232 3312 -1 1852 157 10 13 chr15 17193917 17194216 -68501538 + AluJo SINE Alu 3 300 -12 2398 96 0 10 chr15 17194990 17195304 -68500450 - AluSx SINE Alu -1 311 1 2120 119 23 3 chr15 17195362 17195665 -68500089 - AluSx SINE Alu -3 309 1 2457 77 0 0 chr15 17195730 17196028 -68499726 - AluY SINE Alu -13 298 1 754 189 0 0 chr15 17196117 17196249 -68499505 - FLAM_A SINE Alu 0 133 2 817 152 0 23 chr15 17197014 17197146 -68498608 + FLAM_C SINE Alu 1 129 -14 2309 107 0 0 chr15 17197201 17197501 -68498253 + AluSg1 SINE Alu 4 303 -6 362 223 64 0 chr15 17198262 17198356 -68497398 - MIR SINE MIR -40 222 123 1951 110 70 0 chr15 17198497 17198770 -68496984 - AluSx SINE Alu -20 292 1 2515 75 0 7 chr15 17198777 17199084 -68496670 - AluY SINE Alu -6 305 1 2163 107 20 3 chr15 17199183 17199482 -68496272 + AluSp SINE Alu 1 304 -9 1788 161 31 0 chr15 17200072 17200358 -68495396 + AluJb SINE Alu 1 295 -17 2142 131 13 0 chr15 17200358 17200664 -68495090 + AluSx SINE Alu 1 310 -2 2300 105 0 7 chr15 17201177 17201481 -68494273 - AluSx SINE Alu -10 302 1 1204 200 89 32 chr15 17201497 17201673 -68494081 + L1MB7 LINE L1 2182 2347 -3799 2505 67 0 0 chr15 17201673 17201970 -68493784 + AluY SINE Alu 1 297 -14 1204 200 89 32 chr15 17201970 17202163 -68493591 + L1MB7 LINE L1 2347 2572 -3574 3375 206 52 67 chr15 17202218 17202265 -68493489 + L1MB7 LINE L1 3998 4044 -2102 1572 108 125 4 chr15 17202265 17202505 -68493249 - AluSx SINE Alu -43 269 1 3375 206 52 67 chr15 17202505 17203022 -68492732 + L1MB7 LINE L1 4044 4567 -1579 2095 128 0 3 chr15 17203022 17203312 -68492442 + AluSx SINE Alu 1 289 -23 3375 206 52 67 chr15 17203312 17203638 -68492116 + L1MB7 LINE L1 4567 4875 -1271 665 175 0 32 chr15 17203638 17203764 -68491990 - FLAM_C SINE Alu -10 123 2 3375 206 52 67 chr15 17203764 17203894 -68491860 + L1MB7 LINE L1 4875 5005 -1141 2716 133 64 92 chr15 17203883 17204252 -68491502 + L1MB3 LINE L1 5568 5915 -268 * 2247 118 0 3 chr15 17204252 17204565 -68491189 + AluSq SINE Alu 1 312 -1 2716 133 64 92 chr15 17204565 17204818 -68490936 + L1MB3 LINE L1 5915 6173 -10 3937 184 51 13 chr15 17204830 17205957 -68489797 + L1MB7 LINE L1 4997 6171 -13 190 240 93 27 chr15 17206512 17206587 -68489167 + L2 LINE L2 3188 3267 -46 932 161 63 0 chr15 17206625 17206799 -68488955 - AluJo SINE Alu -8 304 120 380 123 0 0 chr15 17206800 17206857 -68488897 - Alu SINE Alu 0 300 244 25 0 0 0 chr15 17206984 17207009 -68488745 + AT_rich Low_complexity Low_complexity 1 25 0 576 237 68 39 chr15 17207009 17207317 -68488437 - AluYb8 SINE Alu 0 318 2 238 250 14 27 chr15 17207473 17207638 -68488116 + A-rich Low_complexity Low_complexity 1 217 0 34 0 0 0 chr15 17207664 17207698 -68488056 + AT_rich Low_complexity Low_complexity 1 34 0 1351 132 26 116 chr15 17207864 17208060 -68487694 - AluYb8 SINE Alu -16 302 143 2882 19 0 6 chr15 17208060 17208379 -68487375 - AluYb8 SINE Alu -1 317 1 1351 132 26 116 chr15 17208379 17208492 -68487262 - AluYb8 SINE Alu -175 143 21 21 36 0 0 chr15 17208575 17208603 -68487151 + AT_rich Low_complexity Low_complexity 1 28 0 756 159 41 108 chr15 17208739 17208887 -68486867 + MER5A DNA MER1_type 5 138 -51 2269 99 10 0 chr15 17208887 17209191 -68486563 + AluSx SINE Alu 1 307 -5 756 159 41 108 chr15 17209191 17209237 -68486517 + MER5A DNA MER1_type 138 186 -3 342 278 35 56 chr15 17209315 17209769 -68485985 - MER5A DNA MER1_type -6 183 43 2129 109 0 32 chr15 17209423 17209734 -68486020 - AluSq SINE Alu -12 301 1 195 296 40 59 chr15 17209734 17209796 -68485958 + MER5A DNA MER1_type 126 188 -1 2584 44 3 3 chr15 17209813 17210110 -68485644 + AluY SINE Alu 1 297 -14 866 111 0 72 chr15 17210290 17210443 -68485311 - FLAM_C SINE Alu -1 142 1 1809 127 3 34 chr15 17210479 17210797 -68484957 - AluSg SINE Alu 0 309 1 1597 124 0 0 chr15 17211156 17211374 -68484380 - AluSq SINE Alu -93 220 3 1857 149 38 3 chr15 17211398 17211687 -68484067 + AluSg SINE Alu 1 299 -11 2448 59 7 10 chr15 17212307 17212614 -68483140 + AluY SINE Alu 1 306 -5 1555 176 28 11 chr15 17213444 17213728 -68482026 + AluJo SINE Alu 1 289 -23 1306 87 5 5 chr15 17213728 17213913 -68481841 - AluY SINE Alu -2 309 125 282 286 59 8 chr15 17214471 17214590 -68481164 - AluJb SINE Alu -157 145 21 923 241 23 47 chr15 17214638 17214895 -68480859 + AluJb SINE Alu 7 257 -55 1446 150 12 16 chr15 17215034 17215287 -68480467 - AluY SINE Alu -59 252 1 1599 200 3 14 chr15 17216263 17216558 -68479196 + AluJb SINE Alu 7 292 -20 2287 116 3 0 chr15 17216827 17217130 -68478624 - AluSq SINE Alu -3 310 7 1845 132 26 0 chr15 17217169 17217435 -68478319 - AluSx SINE Alu -24 288 16 * 2036 73 16 0 chr15 17217433 17217705 -68478049 + AluSp SINE Alu 33 308 0 1636 167 17 31 chr15 17217714 17218008 -68477746 + AluJb SINE Alu 1 290 -22 2089 114 3 57 chr15 17218236 17218370 -68477384 + AluSx SINE Alu 1 141 -171 2242 96 3 14 chr15 17218370 17218662 -68477092 + AluSp SINE Alu 1 289 -24 2089 114 3 57 chr15 17218662 17218842 -68476912 + AluSx SINE Alu 141 298 -14 2249 104 7 10 chr15 17219435 17219732 -68476022 + AluSx SINE Alu 1 296 -16 1910 144 0 49 chr15 17219806 17220112 -68475642 - AluSq SINE Alu -22 291 1 1869 101 8 0 chr15 17221317 17221564 -68474190 - AluSp SINE Alu -11 302 54 225 278 157 19 chr15 17221853 17221961 -68473793 - MER5A DNA MER1_type -30 159 37 2271 102 20 3 chr15 17222570 17222863 -68472891 + AluSx SINE Alu 1 298 -14 2028 112 7 30 chr15 17224820 17225115 -68470639 + AluSx SINE Alu 1 288 -24 1887 151 28 0 chr15 17225269 17225560 -68470194 + AluSx SINE Alu 1 299 -13 674 177 16 0 chr15 17225695 17225819 -68469935 + FLAM_C SINE Alu 5 130 -3 2338 98 10 3 chr15 17226086 17226392 -68469362 - AluSx SINE Alu -4 308 1 1596 136 87 45 chr15 17226486 17226773 -68468981 - AluJo SINE Alu -13 299 1 2045 146 7 0 chr15 17227604 17227899 -68467855 + AluSx SINE Alu 1 297 -15 205 244 0 0 chr15 17229382 17229423 -68466331 + GA-rich Low_complexity Low_complexity 4 44 0 824 127 0 0 chr15 17229870 17229988 -68465766 - AluSx SINE Alu -4 305 188 * 1075 105 0 14 chr15 17229987 17230130 -68465624 - AluSx SINE Alu -170 142 2 2510 59 0 7 chr15 17230697 17231001 -68464753 + AluY SINE Alu 1 302 -9 2258 113 0 0 chr15 17233067 17233359 -68462395 - AluSx SINE Alu -16 296 5 2096 132 3 0 chr15 17233371 17233666 -68462088 - AluSx SINE Alu -16 296 1 1683 171 14 11 chr15 17233697 17234003 -68461751 + AluJo SINE Alu 1 307 0 508 164 23 4 chr15 17234439 17234537 -68461217 + Tigger3(Golem) DNA MER2_type 15 111 -2918 1434 159 102 19 chr15 17234537 17234674 -68461080 - AluJo SINE Alu -18 294 170 2139 93 0 0 chr15 17234674 17234943 -68460811 - AluSx SINE Alu -3 309 41 1434 159 102 19 chr15 17234943 17235069 -68460685 - AluJo SINE Alu -142 170 9 2277 81 54 3 chr15 17237711 17238006 -68457748 + AluSg SINE Alu 1 310 0 238 339 15 77 chr15 17238200 17238330 -68457424 + MIR3 SINE MIR 56 177 -31 2451 53 3 56 chr15 17238591 17238911 -68456843 - AluSx SINE Alu -9 303 1 183 80 0 0 chr15 17239279 17239304 -68456450 + (CGGG)n Simple_repeat Simple_repeat 4 28 0 2069 119 3 20 chr15 17240075 17240377 -68455377 - AluSp SINE Alu -16 297 1 235 387 65 0 chr15 17240382 17240537 -68455217 + L2 LINE L2 3107 3271 -1 1312 153 0 5 chr15 17241083 17241279 -68454475 + AluSg SINE Alu 1 195 -115 571 49 0 49 chr15 17241280 17241362 -68454392 + AluSq/x SINE Alu 66 143 -169 1320 188 29 8 chr15 17241362 17241601 -68454153 - AluJo SINE Alu -68 244 1 1821 182 25 0 chr15 17241624 17241910 -68453844 - AluJo SINE Alu -19 293 1 671 154 0 17 chr15 17241920 17242037 -68453717 - FLAM_C SINE Alu -18 125 11 367 269 78 0 chr15 17242060 17242201 -68453553 - L1ME LINE L1 -408 5762 5611 32 26 0 0 chr15 17242272 17242311 -68453443 + AT_rich Low_complexity Low_complexity 1 39 0 470 283 24 24 chr15 17242360 17242565 -68453189 + AluY SINE Alu 2 206 -105 525 240 34 28 chr15 17242844 17243023 -68452731 - AluSg/x SINE Alu -1 308 129 1762 177 0 0 chr15 17243250 17243549 -68452205 - AluSc SINE Alu -4 305 7 185 258 65 48 chr15 17243648 17243710 -68452044 + MIR3 SINE MIR 125 187 -21 293 279 9 27 chr15 17243775 17243886 -68451868 - MIR SINE MIR -73 135 27 183 301 68 58 chr15 17244165 17244268 -68451486 - MIR SINE MIR -62 146 43 960 198 67 67 chr15 17245206 17245339 -68450415 + AluJo SINE Alu 3 135 -167 2561 47 3 3 chr15 17245339 17245638 -68450116 + AluY SINE Alu 1 299 -12 960 198 67 67 chr15 17245638 17245802 -68449952 + AluJo SINE Alu 134 300 -2 1025 59 15 0 chr15 17246721 17246856 -68448898 + AluY SINE Alu 173 309 -2 2321 108 0 16 chr15 17247216 17247532 -68448222 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr15 17247948 17247980 -68447774 + AT_rich Low_complexity Low_complexity 1 32 0 843 130 0 0 chr15 17247980 17248103 -68447651 + FLAM_C SINE Alu 1 123 -10 204 40 0 0 chr15 17248107 17248132 -68447622 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 2078 109 11 3 chr15 17248170 17248477 -68447277 + AluSx SINE Alu 1 309 0 2409 77 0 0 chr15 17248487 17248796 -68446958 + AluSq SINE Alu 1 309 0 1144 144 0 23 chr15 17249457 17249631 -68446123 + AluJo SINE Alu 1 170 -142 306 304 13 76 chr15 17249695 17249817 -68445937 + MIR3 SINE MIR 46 157 -51 2465 47 20 3 chr15 17249817 17250116 -68445638 - AluY SINE Alu -7 304 1 306 304 13 76 chr15 17250116 17250151 -68445603 + MIR3 SINE MIR 157 193 -15 787 262 90 4 chr15 17250642 17250875 -68444879 - MIR SINE MIR -3 259 7 2331 87 3 7 chr15 17251099 17251399 -68444355 - AluY SINE Alu -12 299 1 691 197 8 0 chr15 17251400 17251532 -68444222 - AluJo SINE Alu -178 134 2 311 167 13 90 chr15 17252476 17252554 -68443200 - L2 LINE L2 -4 3309 3238 878 123 0 0 chr15 17253300 17253430 -68442324 - FLAM_C SINE Alu -1 132 3 400 347 21 6 chr15 17254271 17254472 -68441282 - MIR SINE MIR -57 205 3 2152 112 0 7 chr15 17254669 17254999 -68440755 - AluSq SINE Alu 0 313 1 835 213 85 5 chr15 17255022 17255210 -68440544 - L1MDa LINE L1 -5985 555 353 526 195 34 0 chr15 17255239 17255357 -68440397 + MIR SINE MIR 87 208 -54 2209 101 39 0 chr15 17255584 17255870 -68439884 - AluSq SINE Alu -16 297 1 2010 158 3 0 chr15 17255935 17256233 -68439521 - AluSx SINE Alu -13 299 1 1051 182 6 0 chr15 17257373 17257554 -68438200 - AluJo SINE Alu -9 303 122 1648 194 10 7 chr15 17257573 17257872 -68437882 - AluJo SINE Alu -11 301 2 2358 82 0 3 chr15 17257881 17258173 -68437581 - AluY SINE Alu -18 293 3 32 0 0 0 chr15 17258230 17258262 -68437492 + AT_rich Low_complexity Low_complexity 1 32 0 2123 132 0 0 chr15 17258294 17258582 -68437172 - AluSx SINE Alu -9 303 16 2173 110 3 19 chr15 17258640 17258950 -68436804 - AluSx SINE Alu -7 305 1 2144 107 7 0 chr15 17258962 17259282 -68436472 - AluSx SINE Alu 0 322 1 509 260 157 2 chr15 17259283 17259515 -68436239 - L1MC/D LINE L1 -398 5723 5511 190 255 76 125 chr15 17260756 17260875 -68434879 - MIR SINE MIR 0 262 154 1693 155 32 18 chr15 17260875 17261159 -68434595 - AluSx SINE Alu -24 288 1 190 255 76 125 chr15 17261159 17261223 -68434531 - MIR SINE MIR -108 154 88 2467 89 0 0 chr15 17261264 17261567 -68434187 + AluSg1 SINE Alu 1 303 -6 903 157 30 30 chr15 17261603 17261769 -68433985 - FRAM SINE Alu 0 166 1 523 236 0 14 chr15 17261863 17262011 -68433743 - L1MB8 LINE L1 0 6178 6033 2431 77 3 0 chr15 17262081 17262378 -68433376 - AluSq SINE Alu -15 298 1 180 176 0 0 chr15 17262514 17262548 -68433206 + A-rich Low_complexity Low_complexity 1 34 0 2381 99 3 0 chr15 17266555 17266858 -68428896 + AluSx SINE Alu 1 304 -8 651 227 86 56 chr15 17268046 17268244 -68427510 + MER3 DNA MER1_type 1 204 -5 22 0 0 0 chr15 17271923 17271945 -68423809 + AT_rich Low_complexity Low_complexity 1 22 0 324 286 118 0 chr15 17272751 17272870 -68422884 - MIR SINE MIR -46 216 84 543 134 49 0 chr15 17272951 17273033 -68422721 + AluJb SINE Alu 209 294 -18 949 157 18 12 chr15 17274216 17274382 -68421372 + FRAM SINE Alu 1 167 -9 1005 189 23 46 chr15 17274382 17274642 -68421112 + L1MB8 LINE L1 5918 6171 -7 267 281 83 21 chr15 17274654 17274750 -68421004 - MER5A DNA MER1_type -25 164 63 220 175 125 50 chr15 17274919 17274999 -68420755 - MIR3 SINE MIR -25 183 98 23 33 0 0 chr15 17275844 17275874 -68419880 + GC_rich Low_complexity Low_complexity 1 30 0 2318 83 3 0 chr15 17276676 17276988 -68418766 - AluSp SINE Alu 0 313 1 2304 57 6 22 chr15 17277298 17277614 -68418140 + AluY SINE Alu 1 311 0 506 253 12 12 chr15 17277625 17277787 -68417967 + L1ME LINE L1 5273 5434 -728 569 198 0 0 chr15 17277839 17277935 -68417819 + FRAM SINE Alu 5 100 -76 2272 88 3 0 chr15 17278184 17278479 -68417275 + AluSx SINE Alu 1 296 -16 660 186 0 0 chr15 17278509 17278622 -68417132 + AluSg/x SINE Alu 195 307 -3 1571 161 54 14 chr15 17279749 17279879 -68415875 + AluSx SINE Alu 7 130 -182 1892 119 6 41 chr15 17279879 17280198 -68415556 + AluSx SINE Alu 1 308 -4 1571 161 54 14 chr15 17280198 17280347 -68415407 + AluSx SINE Alu 130 297 -15 1464 151 81 25 chr15 17280429 17280713 -68415041 - AluJo SINE Alu -12 300 1 2127 78 11 3 chr15 17280722 17281005 -68414749 - AluY SINE Alu -15 296 12 558 315 67 55 chr15 17281044 17281371 -68414383 + L2 LINE L2 2941 3271 -1 269 239 15 0 chr15 17281418 17281485 -68414269 + MIR3 SINE MIR 88 155 -53 1685 112 108 0 chr15 17281520 17281779 -68413975 - AluSg1 SINE Alu -13 296 10 23 0 0 0 chr15 17281783 17281806 -68413948 + AT_rich Low_complexity Low_complexity 1 23 0 550 200 30 52 chr15 17281899 17282034 -68413720 + FLAM_C SINE Alu 1 132 -1 219 225 0 0 chr15 17282043 17282083 -68413671 + polypurine Low_complexity Low_complexity 1 40 0 229 275 25 62 chr15 17282205 17282285 -68413469 + L2 LINE L2 3193 3269 -3 2200 89 10 0 chr15 17282384 17282677 -68413077 + AluSg SINE Alu 1 296 -14 307 294 25 50 chr15 17282752 17282912 -68412842 + L1ME LINE L1 5507 5662 -459 888 259 107 10 chr15 17282925 17283214 -68412540 - L2 LINE L2 -2 3311 2995 1161 215 24 14 chr15 17283214 17283537 -68412217 + L1MB3 LINE L1 5339 5661 -522 1443 178 20 41 chr15 17283537 17283830 -68411924 - AluJb SINE Alu -19 293 7 1676 192 0 0 chr15 17283868 17284154 -68411600 + AluJb SINE Alu 12 297 -15 2858 151 2 47 chr15 17284159 17284179 -68411575 + L1MB3 LINE L1 5662 5681 -502 2248 96 7 0 chr15 17284179 17284481 -68411273 - AluSq SINE Alu -9 304 1 2152 127 0 0 chr15 17284483 17284791 -68410963 - AluSx SINE Alu -4 308 1 2858 151 2 47 chr15 17284791 17285305 -68410449 + L1MB3 LINE L1 5682 6175 -8 710 265 131 11 chr15 17285312 17285580 -68410174 - L2 LINE L2 -412 2902 2603 2450 48 0 19 chr15 17285707 17286019 -68409735 + AluY SINE Alu 1 306 -5 272 196 93 56 chr15 17286320 17286427 -68409327 - MER58C DNA MER1_type -1 214 104 571 183 119 0 chr15 17286480 17286606 -68409148 - L1M3 LINE L1 -549 5631 5491 805 176 0 0 chr15 17286608 17286744 -68409010 - FRAM SINE Alu -1 175 40 817 146 6 53 chr15 17286778 17286840 -68408914 - L1M3 LINE L1 -683 5495 5432 2068 111 17 0 chr15 17286840 17287137 -68408617 - AluSx SINE Alu -10 302 1 817 146 6 53 chr15 17287137 17287245 -68408509 - L1M3 LINE L1 -746 5432 5333 639 179 0 0 chr15 17287249 17287355 -68408399 - FRAM SINE Alu -1 175 70 350 179 54 89 chr15 17287401 17287474 -68408280 - MER58C DNA MER1_type -99 116 47 1767 108 104 0 chr15 17287474 17287742 -68408012 + AluSg1 SINE Alu 1 296 -13 350 179 54 89 chr15 17287742 17287780 -68407974 - MER58C DNA MER1_type -168 47 9 263 226 16 0 chr15 17287782 17287844 -68407910 - MIR SINE MIR -58 150 88 558 315 67 55 chr15 17287891 17288218 -68407536 - L2 LINE L2 -1 3271 2941 2282 48 61 0 chr15 17288244 17288537 -68407217 + AluY SINE Alu 1 311 0 929 335 45 16 chr15 17288633 17288939 -68406815 - L2 LINE L2 -642 2672 2349 2127 110 7 0 chr15 17288939 17289239 -68406515 - AluSx SINE Alu -10 302 1 929 335 45 16 chr15 17289239 17289359 -68406395 - L2 LINE L2 -965 2349 2234 287 238 230 16 chr15 17289422 17289548 -68406206 + MIR3 SINE MIR 4 156 -52 1743 167 7 3 chr15 17289591 17289896 -68405858 + AluJb SINE Alu 1 306 -6 1488 187 20 23 chr15 17290741 17291040 -68404714 - AluJo SINE Alu -14 298 1 1603 153 18 64 chr15 17291067 17291393 -68404361 + AluJo SINE Alu 1 311 -1 2158 107 0 0 chr15 17291490 17291781 -68403973 + AluSx SINE Alu 1 291 -21 2230 99 0 0 chr15 17291866 17292168 -68403586 + AluSg SINE Alu 1 302 -8 1243 87 0 0 chr15 17292168 17292329 -68403425 + AluSg/x SINE Alu 132 292 -18 2143 77 40 3 chr15 17292331 17292631 -68403123 + AluY SINE Alu 1 311 0 304 300 25 0 chr15 17292893 17292973 -68402781 + LTR16C LTR ERVL 97 178 -313 2426 68 7 0 chr15 17292980 17293287 -68402467 - AluSg SINE Alu -1 309 1 447 70 0 0 chr15 17293301 17293381 -68402373 - Alu SINE Alu 0 302 223 180 158 0 0 chr15 17294473 17294511 -68401243 + (CAGGG)n Simple_repeat Simple_repeat 3 40 0 259 283 160 13 chr15 17294679 17294836 -68400918 + MIR SINE MIR 15 191 -62 484 232 91 95 chr15 17295255 17295496 -68400258 + MIR SINE MIR 23 262 0 540 115 0 0 chr15 17297058 17297136 -68398618 + MADE1 DNA Mariner 1 78 -2 837 252 58 21 chr15 17297682 17297924 -68397830 + MIR SINE MIR 2 252 -10 581 183 7 88 chr15 17297956 17298093 -68397661 - MER3 DNA MER1_type -83 126 1 999 219 48 5 chr15 17298109 17298319 -68397435 + MER20 DNA MER1_type 1 219 0 546 261 55 50 chr15 17298319 17298363 -68397391 - MIR SINE MIR -55 207 165 675 142 39 39 chr15 17298363 17298490 -68397264 + FLAM_C SINE Alu 1 127 -6 546 261 55 50 chr15 17298490 17298644 -68397110 - MIR SINE MIR -97 165 8 2392 90 0 0 chr15 17299037 17299347 -68396407 + AluSg SINE Alu 1 310 0 2230 98 0 22 chr15 17303202 17303518 -68392236 + AluSx SINE Alu 1 309 -3 2004 172 149 54 chr15 17303519 17303561 -68392193 + L1MC1 LINE L1 5241 5278 -868 1899 129 18 0 chr15 17303561 17303847 -68391907 + AluSx SINE Alu 1 291 -21 1996 128 14 0 chr15 17303847 17304143 -68391611 + AluSx SINE Alu 1 301 -11 2004 172 149 54 chr15 17304143 17304385 -68391369 + L1MC1 LINE L1 5278 5496 -650 1995 127 10 3 chr15 17304385 17304685 -68391069 - AluJb SINE Alu -10 302 1 2004 172 149 54 chr15 17304685 17304782 -68390972 + L1MC1 LINE L1 5496 5213 -933 2507 49 3 0 chr15 17304782 17305086 -68390668 + AluY SINE Alu 1 305 -6 2004 172 149 54 chr15 17305086 17305299 -68390455 + L1MC1 LINE L1 5212 5403 -743 251 239 0 56 chr15 17305315 17305386 -68390368 + AluYb8 SINE Alu 236 302 -6 2038 159 37 15 chr15 17305393 17305802 -68389952 + L1MC1 LINE L1 5901 6318 -15 856 174 68 174 chr15 17305806 17306081 -68389673 - Charlie1a DNA MER1_type -2415 346 122 1692 97 48 12 chr15 17306081 17306329 -68389425 + AluSx SINE Alu 43 299 -13 856 174 68 174 chr15 17306329 17306437 -68389317 - Charlie1a DNA MER1_type -2639 122 4 2416 64 3 0 chr15 17306641 17306939 -68388815 - AluSp SINE Alu -14 299 1 250 180 40 0 chr15 17306942 17306992 -68388762 - Alu SINE Alu -10 292 241 1874 117 3 30 chr15 17307807 17308107 -68387647 + AluSx SINE Alu 20 311 -1 705 170 15 37 chr15 17308122 17308257 -68387497 + FLAM_C SINE Alu 2 133 0 319 281 26 82 chr15 17308257 17308274 -68387480 + L1MEc LINE L1 1003 1019 -5377 2011 117 13 3 chr15 17308274 17308574 -68387180 + AluSx SINE Alu 1 303 -9 319 281 26 82 chr15 17308574 17308823 -68386931 + L1MEc LINE L1 1019 1254 -5142 2079 128 0 0 chr15 17308864 17309168 -68386586 + AluSx SINE Alu 1 304 -8 887 107 8 46 chr15 17309214 17309345 -68386409 + FLAM_C SINE Alu 1 126 -7 332 113 0 0 chr15 17309349 17309411 -68386343 + Tigger3(Golem) DNA MER2_type 2506 2567 -462 927 197 0 117 chr15 17309421 17309670 -68386084 + AluJo SINE Alu 1 220 -92 2135 94 10 7 chr15 17309674 17309971 -68385783 - AluSp SINE Alu -15 298 1 1625 135 47 44 chr15 17310030 17310184 -68385570 - AluJb SINE Alu -13 299 142 2177 97 20 0 chr15 17310184 17310483 -68385271 - AluSq SINE Alu -8 305 1 1625 135 47 44 chr15 17310483 17310625 -68385129 - AluJb SINE Alu -170 142 2 2513 125 75 7 chr15 17310631 17311056 -68384698 + Tigger3(Golem) DNA MER2_type 2575 3028 -1 793 126 39 24 chr15 17311105 17311232 -68384522 + FLAM_C SINE Alu 5 133 0 1820 160 10 3 chr15 17311595 17311888 -68383866 - AluJb SINE Alu -17 295 1 549 280 142 19 chr15 17311969 17312221 -68383533 - L2 LINE L2 -1292 2022 1736 2293 108 0 3 chr15 17312221 17312535 -68383219 + AluSq SINE Alu 1 313 0 357 294 157 13 chr15 17313631 17313784 -68381970 + MER5B DNA MER1_type 4 178 0 618 296 38 14 chr15 17313798 17313905 -68381849 + MIR SINE MIR 45 148 -114 894 167 0 0 chr15 17313905 17314037 -68381717 + FLAM_C SINE Alu 1 132 -1 618 296 38 14 chr15 17314037 17314142 -68381612 + MIR SINE MIR 148 262 0 840 182 62 72 chr15 17314342 17314446 -68381308 + MER3 DNA MER1_type 3 106 -103 2166 102 13 0 chr15 17314446 17314750 -68381004 + AluSp SINE Alu 1 308 -5 840 182 62 72 chr15 17314750 17314854 -68380900 + MER3 DNA MER1_type 106 209 0 1772 157 13 16 chr15 17314859 17315210 -68380544 + AluJb SINE Alu 1 350 0 2139 106 0 3 chr15 17316803 17317104 -68378650 - AluSg SINE Alu -10 300 1 878 153 0 0 chr15 17317123 17317254 -68378500 + FLAM_C SINE Alu 1 131 -2 1178 185 22 63 chr15 17317279 17317380 -68378374 + AluJo SINE Alu 37 141 -171 2312 106 0 0 chr15 17317380 17317691 -68378063 + AluSx SINE Alu 1 311 -1 1178 185 22 63 chr15 17317691 17317859 -68377895 + AluJo SINE Alu 141 295 -17 313 313 209 30 chr15 17317955 17318156 -68377598 + MIR SINE MIR 20 256 -6 200 344 0 0 chr15 17318435 17318496 -68377258 - L2 LINE L2 0 3272 3212 979 205 11 0 chr15 17318517 17318646 -68377108 + AluJo SINE Alu 5 135 -177 2358 92 6 19 chr15 17318646 17318988 -68376766 + AluSq SINE Alu 1 313 0 671 298 85 58 chr15 17318992 17319688 -68376066 - L2 LINE L2 -69 3203 2495 2599 57 3 16 chr15 17319770 17320087 -68375667 + AluSp SINE Alu 1 313 0 2445 76 7 0 chr15 17320533 17320837 -68374917 + AluY SINE Alu 1 306 -5 456 263 56 62 chr15 17320841 17320895 -68374859 - L1ME4a LINE L1 -11 6110 6057 2017 98 58 4 chr15 17320895 17321169 -68374585 + AluSg SINE Alu 1 289 -21 456 263 56 62 chr15 17321169 17321293 -68374461 - L1ME4a LINE L1 -64 6057 5933 2293 106 3 0 chr15 17321306 17321320 -68374434 - AluSx SINE Alu -8 304 292 799 21 27 64 chr15 17321320 17321507 -68374247 + (TA)n Simple_repeat Simple_repeat 1 180 0 2293 106 3 0 chr15 17321507 17321795 -68373959 - AluSx SINE Alu -20 292 1 2079 104 35 10 chr15 17322080 17322234 -68373520 - AluSx SINE Alu -16 296 130 2557 72 0 3 chr15 17322234 17322540 -68373214 - AluSq SINE Alu -8 305 1 2079 104 35 10 chr15 17322540 17322674 -68373080 - AluSx SINE Alu -182 130 1 461 279 139 0 chr15 17322714 17322915 -68372839 + MER112 DNA MER1_type 9 237 -23 523 310 35 13 chr15 17322932 17323158 -68372596 - L1ME4a LINE L1 -340 5781 5551 1358 239 92 43 chr15 17323203 17323713 -68372041 - MLT1F1 LTR MaLR -32 535 1 500 255 43 27 chr15 17323738 17323922 -68371832 - L1MA7 LINE L1 -116 6175 5989 1451 57 21 0 chr15 17323970 17324189 -68371565 + L1PA10 LINE L1 5953 6175 0 2396 92 13 0 chr15 17324196 17324500 -68371254 + AluSp SINE Alu 5 312 -1 2403 96 3 0 chr15 17324540 17324833 -68370921 + AluSp SINE Alu 1 294 -19 1863 146 125 0 chr15 17324837 17325180 -68370574 - MER57A LTR ERV1 -17 386 1 1908 159 3 3 chr15 17325232 17325521 -68370233 + AluJo SINE Alu 1 289 -23 600 240 130 66 chr15 17325598 17326108 -68369646 - MLT1G1 LTR MaLR 0 595 2 2125 148 0 3 chr15 17326360 17326663 -68369091 + AluSx SINE Alu 1 302 -10 221 229 156 37 chr15 17326760 17326862 -68368892 + MIR SINE MIR 31 148 -60 2365 86 0 0 chr15 17326862 17327177 -68368577 - AluSc SINE Alu 0 309 1 720 136 85 0 chr15 17327193 17327311 -68368443 - FLAM_C SINE Alu -5 128 1 236 340 53 20 chr15 17327660 17327810 -68367944 - L1ME4a LINE L1 -11 6110 5956 2028 146 0 13 chr15 17327933 17328242 -68367512 - AluJo SINE Alu -7 305 1 4060 110 32 14 chr15 17328242 17328890 -68366864 - L1PA16 LINE L1 -11 6155 5496 198 71 0 0 chr15 17328891 17328919 -68366835 + (TTG)n Simple_repeat Simple_repeat 2 29 0 610 234 81 62 chr15 17328921 17329153 -68366601 - MIR SINE MIR -6 256 6 749 229 65 16 chr15 17329382 17329627 -68366127 + MIR SINE MIR 5 261 -1 2151 111 11 0 chr15 17329713 17330031 -68365723 + AluSx SINE Alu 1 321 0 26 30 0 0 chr15 17331140 17331173 -68364581 + GC_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr15 17331798 17331826 -68363928 + GC_rich Low_complexity Low_complexity 1 28 0 1926 110 0 71 chr15 17332358 17332668 -68363086 - AluSq SINE Alu 0 313 26 413 95 0 32 chr15 17332703 17332766 -68362988 - 7SK RNA RNA -132 61 1 375 287 22 15 chr15 17333621 17333757 -68361997 - MIR SINE MIR -79 183 47 205 250 0 0 chr15 17334744 17334784 -68360970 + C-rich Low_complexity Low_complexity 3 42 0 637 298 37 0 chr15 17335556 17335747 -68360007 + L1MC4a LINE L1 5558 5755 -2053 295 243 64 50 chr15 17335857 17335997 -68359757 + L1MC4a LINE L1 5754 5895 -1913 1637 185 22 35 chr15 17336148 17336188 -68359566 - AluJb SINE Alu -2 310 271 2471 76 3 0 chr15 17336188 17336491 -68359263 + AluY SINE Alu 1 304 -7 1637 185 22 35 chr15 17336491 17336764 -68358990 - AluJb SINE Alu -41 271 1 461 269 31 8 chr15 17336895 17337025 -68358729 + MIR SINE MIR 21 153 -109 1082 213 56 4 chr15 17337066 17337283 -68358471 - MER58B DNA MER1_type -2079 341 108 2478 74 10 3 chr15 17337283 17337593 -68358161 - AluSp SINE Alu -1 312 1 1082 213 56 4 chr15 17337593 17337624 -68358130 - MER58B DNA MER1_type -2312 108 80 2306 99 7 3 chr15 17338369 17338673 -68357081 - AluSc SINE Alu -4 305 1 1322 196 152 44 chr15 17338899 17338961 -68356793 - MLT1D LTR MaLR -1 504 450 2221 113 0 0 chr15 17338961 17339268 -68356486 + AluSx SINE Alu 1 307 0 1322 196 152 44 chr15 17339268 17339659 -68356095 - MLT1D LTR MaLR -55 450 1 327 25 0 0 chr15 17339845 17339885 -68355869 + (TG)n Simple_repeat Simple_repeat 2 41 0 835 188 61 0 chr15 17339946 17340111 -68355643 + FAM SINE Alu 1 175 0 702 218 182 53 chr15 17342105 17342322 -68353432 + MER113 DNA MER1_type? 3 191 -330 1985 165 0 0 chr15 17342322 17342625 -68353129 + AluJb SINE Alu 2 304 -8 702 218 182 53 chr15 17342625 17342697 -68353057 + MER113 DNA MER1_type? 191 252 -269 777 152 8 0 chr15 17342697 17342822 -68352932 + FLAM_A SINE Alu 1 126 -7 702 218 182 53 chr15 17342822 17342889 -68352865 + MER113 DNA MER1_type? 252 406 -115 313 271 150 7 chr15 17343587 17343727 -68352027 + MER117 DNA MER1_type 14 173 -24 181 213 85 0 chr15 17345440 17345487 -68350267 - L2 LINE L2 -1 3312 3262 280 333 82 0 chr15 17345527 17345662 -68350092 - MIR SINE MIR -38 224 79 411 230 44 44 chr15 17345746 17345881 -68349873 - L1ME3A LINE L1 -9 6161 6027 224 323 16 0 chr15 17346348 17346410 -68349344 + L2 LINE L2 3199 3261 -11 221 309 15 0 chr15 17346612 17346680 -68349074 - L2 LINE L2 -56 3257 3189 2433 106 0 0 chr15 17347189 17347500 -68348254 + AluSx SINE Alu 1 311 -1 2496 152 49 24 chr15 17347507 17348013 -68347741 + L1MB3 LINE L1 5664 6182 -1 2362 100 3 0 chr15 17348220 17348520 -68347234 + AluSx SINE Alu 1 301 -11 371 269 90 45 chr15 17348655 17348811 -68346943 + Charlie8 DNA MER1_type 1 163 -2254 2192 108 0 23 chr15 17348941 17349246 -68346508 - AluSp SINE Alu -15 298 1 2319 90 7 0 chr15 17349871 17350171 -68345583 - AluSx SINE Alu -10 302 1 2187 96 0 26 chr15 17350530 17350832 -68344922 - AluY SINE Alu -11 300 7 185 258 65 48 chr15 17350931 17350993 -68344761 + MIR3 SINE MIR 125 187 -21 293 279 9 27 chr15 17351058 17351169 -68344585 - MIR SINE MIR -73 135 27 183 301 68 58 chr15 17351448 17351551 -68344203 - MIR SINE MIR -62 146 43 182 254 63 0 chr15 17352350 17352413 -68343341 + MIR3 SINE MIR 12 78 -130 2015 161 0 0 chr15 17352474 17352765 -68342989 + AluJb SINE Alu 1 291 -21 2355 105 0 19 chr15 17352768 17353082 -68342672 + AluSx SINE Alu 3 310 -2 2428 99 0 0 chr15 17353708 17354002 -68341752 - AluSx SINE Alu -18 294 1 526 282 90 104 chr15 17354441 17354674 -68341080 + L1ME4a LINE L1 5704 5939 -182 2230 112 7 0 chr15 17354674 17354970 -68340784 + AluSx SINE Alu 1 298 -14 526 282 90 104 chr15 17354970 17355052 -68340702 + L1ME4a LINE L1 5939 6021 -100 2366 86 7 0 chr15 17355052 17355343 -68340411 - AluSc SINE Alu -16 293 1 526 282 90 104 chr15 17355343 17355438 -68340316 + L1ME4a LINE L1 6021 6109 -12 1650 187 13 43 chr15 17355443 17355748 -68340006 + AluJo SINE Alu 1 296 -16 2386 107 0 0 chr15 17355749 17356049 -68339705 + AluSx SINE Alu 1 300 -12 1202 122 0 33 chr15 17356049 17356212 -68339542 + AluSg/x SINE Alu 134 292 -20 2625 68 0 0 chr15 17356212 17356523 -68339231 + AluY SINE Alu 1 311 0 1202 122 0 33 chr15 17356523 17356540 -68339214 + AluSg/x SINE Alu 292 308 -4 428 268 63 16 chr15 17357692 17357819 -68337935 - MIR3 SINE MIR -32 176 44 366 132 0 0 chr15 17358057 17358133 -68337621 + (CA)n Simple_repeat Simple_repeat 1 76 0 2245 119 0 0 chr15 17358253 17358555 -68337199 + AluSg SINE Alu 1 302 -8 21 71 0 0 chr15 17361294 17361336 -68334418 + GC_rich Low_complexity Low_complexity 1 42 0 228 190 17 17 chr15 17361713 17361771 -68333983 + L1MC/D LINE L1 5856 5913 -1895 685 232 71 0 chr15 17361900 17362055 -68333699 + FRAM SINE Alu 1 166 0 576 161 9 36 chr15 17362062 17362174 -68333580 - Tigger2 DNA MER2_type -2 2716 2608 2345 92 0 22 chr15 17362174 17362488 -68333266 + AluSx SINE Alu 2 308 -4 1063 141 7 0 chr15 17362489 17362666 -68333088 + AluSg/x SINE Alu 133 310 0 2418 82 3 16 chr15 17362666 17362981 -68332773 + AluY SINE Alu 1 311 0 1180 93 0 0 chr15 17363011 17363151 -68332603 - AluSq/x SINE Alu -170 142 3 813 128 77 13 chr15 17363195 17363351 -68332403 - Tigger2 DNA MER2_type -270 2448 2283 1599 163 17 30 chr15 17363351 17363652 -68332102 - AluJo SINE Alu -15 297 1 390 162 15 0 chr15 17363664 17363732 -68332022 - Tigger2 DNA MER2_type -2649 69 1 2442 65 3 3 chr15 17364360 17364650 -68331104 + AluSx SINE Alu 3 292 -20 1610 166 30 4 chr15 17364707 17364978 -68330776 - AluSx SINE Alu 0 312 35 2876 13 0 13 chr15 17365319 17365633 -68330121 - AluYb8 SINE Alu -8 310 1 407 277 110 26 chr15 17365654 17365809 -68329945 + MIR3 SINE MIR 33 200 -8 423 56 0 0 chr15 17365859 17365913 -68329841 + (CA)n Simple_repeat Simple_repeat 2 55 0 332 82 0 0 chr15 17366389 17366438 -68329316 + L1MC3 LINE L1 6762 6810 -975 186 71 0 0 chr15 17366449 17366477 -68329277 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1649 149 36 58 chr15 17366486 17366794 -68328960 + AluJb SINE Alu 2 302 -10 201 74 0 0 chr15 17366992 17367019 -68328735 + (TG)n Simple_repeat Simple_repeat 2 28 0 2194 118 3 3 chr15 17367138 17367434 -68328320 - AluSx SINE Alu -16 296 1 2315 116 0 3 chr15 17367607 17367918 -68327836 + AluSx SINE Alu 1 310 -2 262 157 24 48 chr15 17368158 17368241 -68327513 + (TATAA)n Simple_repeat Simple_repeat 2 82 0 1752 179 3 7 chr15 17368322 17368624 -68327130 - AluJb SINE Alu -10 302 2 2208 118 7 0 chr15 17369013 17369317 -68326437 - AluSx SINE Alu 0 312 7 2225 94 3 0 chr15 17369338 17369645 -68326109 - AluSg SINE Alu -2 308 1 627 169 62 39 chr15 17369646 17369776 -68325978 - FLAM_A SINE Alu 0 133 1 240 207 52 0 chr15 17369778 17369836 -68325918 - L1ME LINE L1 -288 5876 5816 1019 148 33 6 chr15 17369847 17370030 -68325724 - AluJo SINE Alu -4 308 121 1386 169 89 28 chr15 17370032 17370069 -68325685 - L1ME LINE L1 -352 5812 5779 2025 127 0 0 chr15 17370069 17370369 -68325385 - AluSq SINE Alu -5 308 9 1386 169 89 28 chr15 17370369 17370657 -68325097 - L1ME LINE L1 -385 5779 5467 2142 105 7 0 chr15 17370657 17370952 -68324802 + AluSq SINE Alu 2 298 -15 2084 118 0 0 chr15 17370954 17371243 -68324511 + AluSg SINE Alu 1 289 -21 23 0 0 0 chr15 17371243 17371266 -68324488 + AT_rich Low_complexity Low_complexity 1 23 0 1577 124 0 4 chr15 17371322 17371556 -68324198 - AluSg SINE Alu -77 233 1 787 174 0 0 chr15 17371608 17371723 -68324031 + FLAM_C SINE Alu 2 116 -27 213 333 0 0 chr15 17371844 17371898 -68323856 - L2 LINE L2 0 3272 3219 1790 91 121 11 chr15 17372119 17372383 -68323371 - AluSg SINE Alu -17 293 1 229 294 0 59 chr15 17372413 17372498 -68323256 - MIR3 SINE MIR -39 169 90 375 180 0 8 chr15 17372707 17372719 -68323035 - AluJ/FLAM SINE Alu -224 78 67 1524 128 0 25 chr15 17372719 17372961 -68322793 - AluJo SINE Alu -5 307 72 2297 95 0 0 chr15 17372961 17373265 -68322489 - AluSq SINE Alu -9 304 1 375 180 0 8 chr15 17373265 17373330 -68322424 - AluJ/FLAM SINE Alu -233 69 14 579 292 58 13 chr15 17373341 17373567 -68322187 - Charlie2 DNA MER1_type -2626 236 1 997 139 61 6 chr15 17374136 17374301 -68321453 - AluSg/x SINE Alu -4 308 135 1791 158 86 53 chr15 17374308 17374738 -68321016 + L1MC3 LINE L1 7076 7519 -266 1108 148 43 74 chr15 17374738 17374857 -68320897 - MER44D DNA MER2_type -1972 519 398 2348 72 3 10 chr15 17374857 17375163 -68320591 + AluSp SINE Alu 1 304 -9 2150 118 0 0 chr15 17375172 17375476 -68320278 + AluSx SINE Alu 1 304 -8 1108 148 43 74 chr15 17375476 17375603 -68320151 - MER44D DNA MER2_type -2101 390 1 271 173 30 179 chr15 17375607 17375641 -68320113 + L1MC3 LINE L1 6883 6920 -865 2217 98 3 0 chr15 17375641 17375948 -68319806 + AluSc SINE Alu 1 308 -1 271 173 30 179 chr15 17375948 17376049 -68319705 + L1MC3 LINE L1 6920 6991 -794 2254 110 0 0 chr15 17376049 17376380 -68319374 + AluSx SINE Alu 1 312 0 271 173 30 179 chr15 17376380 17376411 -68319343 + L1MC3 LINE L1 6991 7025 -760 362 196 40 14 chr15 17376412 17376595 -68319159 + L1MC3 LINE L1 7187 7364 -421 1740 155 0 50 chr15 17376595 17376823 -68318931 + AluJb SINE Alu 1 211 -101 2037 103 4 4 chr15 17376823 17377124 -68318630 + AluSx SINE Alu 1 301 0 1740 155 0 50 chr15 17377124 17377216 -68318538 + AluJb SINE Alu 211 306 -6 362 196 40 14 chr15 17377216 17377244 -68318510 + L1MC3 LINE L1 7364 7605 -180 2017 121 0 0 chr15 17377517 17377799 -68317955 + AluSg SINE Alu 27 308 -2 1933 151 10 0 chr15 17377811 17378115 -68317639 + AluJb SINE Alu 1 307 -5 180 0 0 0 chr15 17378134 17378154 -68317600 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1015 187 4 52 chr15 17380371 17380431 -68315323 + L1MC3 LINE L1 7521 7582 -203 1022 207 52 74 chr15 17380431 17380650 -68315104 + AluJo SINE Alu 1 214 -88 1928 118 7 0 chr15 17380650 17380949 -68314805 + AluSx SINE Alu 1 301 0 1022 207 52 74 chr15 17380949 17381037 -68314717 + AluJo SINE Alu 214 302 0 1015 187 4 52 chr15 17381037 17381209 -68314545 + L1MC3 LINE L1 7582 7741 -44 2107 97 3 13 chr15 17381209 17381519 -68314235 - AluY SINE Alu -4 307 1 1015 187 4 52 chr15 17381519 17381552 -68314202 + L1MC3 LINE L1 7741 7774 -11 956 118 0 15 chr15 17381553 17381688 -68314066 - FLAM_C SINE Alu 0 133 1 205 288 96 0 chr15 17382093 17382166 -68313588 + L2 LINE L2 2454 2533 -781 186 43 0 0 chr15 17382438 17382461 -68313293 + (TTTCC)n Simple_repeat Simple_repeat 3 25 0 2020 159 0 0 chr15 17382469 17382778 -68312976 - AluSx SINE Alu -3 309 1 849 163 48 0 chr15 17383114 17383261 -68312493 + FRAM SINE Alu 1 154 -22 451 246 106 39 chr15 17383337 17383516 -68312238 - MIR SINE MIR -14 248 58 409 264 66 0 chr15 17384668 17384774 -68310980 + L2 LINE L2 3198 3310 -3 485 315 42 6 chr15 17384793 17384958 -68310796 + L2 LINE L2 3102 3272 0 1374 169 31 24 chr15 17387314 17387569 -68308185 + AluJo SINE Alu 1 257 -55 2205 118 0 0 chr15 17387587 17387900 -68307854 + AluSq SINE Alu 1 313 0 369 275 23 0 chr15 17387932 17388063 -68307691 + L1MC/D LINE L1 5690 5823 -1985 2163 97 3 3 chr15 17388071 17388369 -68307385 + AluSq SINE Alu 1 298 -15 292 279 16 62 chr15 17388688 17388817 -68306937 + MIR SINE MIR 140 262 0 849 127 12 66 chr15 17388991 17389012 -68306742 - BC200 scRNA scRNA -42 158 137 2261 67 40 0 chr15 17389012 17389311 -68306443 - AluY SINE Alu 0 311 1 849 127 12 66 chr15 17389311 17389455 -68306299 - BC200 scRNA scRNA -63 137 2 1850 156 7 7 chr15 17389527 17389829 -68305925 - AluJb SINE Alu -10 302 1 664 194 65 69 chr15 17392190 17392373 -68303381 + MIR SINE MIR 16 198 -64 2204 103 30 0 chr15 17392373 17392674 -68303080 + AluSg SINE Alu 1 310 0 2239 110 0 0 chr15 17392681 17392981 -68302773 + AluSx SINE Alu 1 300 -12 664 194 65 69 chr15 17392981 17393006 -68302748 + MIR SINE MIR 204 231 -31 410 292 8 17 chr15 17393032 17393152 -68302602 + MER5A DNA MER1_type 41 159 -30 2374 77 0 3 chr15 17393159 17393471 -68302283 - AluY SINE Alu 0 311 1 2331 82 0 0 chr15 17395367 17395661 -68300093 + AluY SINE Alu 3 296 -15 835 184 7 0 chr15 17396152 17396293 -68299461 + FRAM SINE Alu 1 140 -36 2268 92 7 0 chr15 17396294 17396600 -68299154 - AluSx SINE Alu -4 308 1 1631 173 23 17 chr15 17399716 17400017 -68295737 - AluJo SINE Alu -9 303 1 321 304 124 7 chr15 17400265 17400438 -68295316 + MIR SINE MIR 5 192 -65 185 374 35 9 chr15 17401745 17401860 -68293894 + MIR3 SINE MIR 37 154 -54 1471 178 14 11 chr15 17402211 17402497 -68293257 - AluSx SINE Alu -19 293 7 503 312 114 49 chr15 17402942 17403175 -68292579 + L1ME4a LINE L1 5704 5963 -158 2098 114 7 0 chr15 17403175 17403473 -68292281 + AluSx SINE Alu 1 300 -12 503 312 114 49 chr15 17403473 17403547 -68292207 + L1ME4a LINE L1 5963 6031 -90 226 95 48 0 chr15 17403553 17403595 -68292159 - Alu SINE Alu -6 293 250 520 235 12 139 chr15 17404618 17404869 -68290885 - AluSc SINE Alu -89 220 2 1442 193 13 46 chr15 17404970 17405276 -68290478 + AluJo SINE Alu 1 296 -16 2257 106 0 0 chr15 17405277 17405578 -68290176 + AluSx SINE Alu 1 301 -11 1132 137 0 16 chr15 17405578 17405741 -68290013 + AluSg/x SINE Alu 134 295 -17 2425 77 0 0 chr15 17405741 17406052 -68289702 + AluY SINE Alu 1 311 0 1132 137 0 16 chr15 17406052 17406070 -68289684 + AluSg/x SINE Alu 295 312 0 429 268 63 16 chr15 17407222 17407349 -68288405 - MIR3 SINE MIR -32 176 44 366 132 0 0 chr15 17407586 17407662 -68288092 + (CA)n Simple_repeat Simple_repeat 1 76 0 1907 149 0 0 chr15 17407782 17408084 -68287670 + AluSg SINE Alu 1 302 -8 579 292 58 13 chr15 17410974 17411200 -68284554 + Charlie2 DNA MER1_type 1 236 -2626 375 180 0 8 chr15 17411211 17411276 -68284478 + AluJo SINE Alu 14 78 -224 2318 92 0 0 chr15 17411276 17411580 -68284174 + AluSq SINE Alu 1 304 -9 1524 128 0 25 chr15 17411580 17411822 -68283932 + AluJo SINE Alu 72 307 -5 375 180 0 8 chr15 17411822 17411834 -68283920 + AluJo SINE Alu 76 78 -224 229 294 0 59 chr15 17412043 17412128 -68283626 + MIR3 SINE MIR 90 169 -39 1799 91 121 11 chr15 17412158 17412423 -68283331 + AluSg SINE Alu 1 294 -16 213 333 0 0 chr15 17412644 17412698 -68283056 + L2 LINE L2 3219 3272 0 787 174 0 0 chr15 17412819 17412934 -68282820 - FLAM_C SINE Alu -27 116 2 1335 131 59 5 chr15 17412986 17413207 -68282547 + AluSg SINE Alu 1 233 -77 23 0 0 0 chr15 17413268 17413291 -68282463 + AT_rich Low_complexity Low_complexity 1 23 0 616 216 8 15 chr15 17413291 17413425 -68282329 - AluSx SINE Alu -22 288 156 331 309 36 14 chr15 17413579 17413718 -68282036 + MIR SINE MIR 62 203 -59 913 119 63 0 chr15 17414606 17414749 -68281005 - AluSx SINE Alu -161 152 1 399 284 71 0 chr15 17414767 17414936 -68280818 + L1M4 LINE L1 4406 4586 -1560 2067 133 0 0 chr15 17414936 17415245 -68280509 - AluSx SINE Alu -3 309 1 2157 114 7 0 chr15 17415254 17415562 -68280192 - AluSq SINE Alu -2 311 2 1386 169 89 28 chr15 17415562 17415850 -68279904 + L1ME LINE L1 5467 5779 -385 2002 130 0 0 chr15 17415850 17416150 -68279604 + AluSq SINE Alu 9 308 -5 1386 169 89 28 chr15 17416150 17416187 -68279567 + L1ME LINE L1 5779 5812 -352 1009 148 33 6 chr15 17416189 17416372 -68279382 + AluJo SINE Alu 121 308 -4 240 207 52 0 chr15 17416383 17416441 -68279313 + L1ME LINE L1 5816 5876 -288 588 185 62 39 chr15 17416443 17416573 -68279181 + FLAM_A SINE Alu 1 133 0 786 172 14 21 chr15 17416575 17416720 -68279034 + AluSg SINE Alu 2 145 -165 595 274 40 45 chr15 17417341 17417564 -68278190 + MIR SINE MIR 41 262 0 836 141 0 22 chr15 17418909 17419044 -68276710 - FLAM_C SINE Alu -1 132 1 46 16 0 16 chr15 17419103 17419147 -68276607 + AT_rich Low_complexity Low_complexity 1 45 -18 1867 98 0 35 chr15 17419147 17419432 -68276322 - AluSq SINE Alu -6 307 33 46 16 0 16 chr15 17419432 17419451 -68276303 + AT_rich Low_complexity Low_complexity 45 63 0 227 201 142 22 chr15 17420113 17420217 -68275537 - MIR SINE MIR -88 120 2 25 51 0 0 chr15 17420653 17420692 -68275062 + AT_rich Low_complexity Low_complexity 1 39 0 317 321 86 91 chr15 17420802 17421222 -68274532 - L1MEd LINE L1 -4906 1213 796 23 0 0 0 chr15 17421241 17421264 -68274490 + AT_rich Low_complexity Low_complexity 1 23 0 1013 197 9 20 chr15 17421701 17421987 -68273767 + MER57-int LTR ERV1 6646 6882 -655 496 158 11 0 chr15 17421987 17422082 -68273672 + LTR54B LTR ERV1 4 99 -399 1846 150 3 19 chr15 17422121 17422434 -68273320 - AluSg SINE Alu 0 310 3 335 151 0 17 chr15 17422458 17422524 -68273230 - FLAM_A SINE Alu -17 116 60 335 220 20 60 chr15 17423396 17423496 -68272258 + MER5B DNA MER1_type 1 96 -82 196 340 124 26 chr15 17424181 17424334 -68271420 - L2 LINE L2 -1 3271 3104 1770 176 0 3 chr15 17424533 17424829 -68270925 + AluJb SINE Alu 3 297 -15 354 272 29 10 chr15 17426937 17427040 -68268714 + L3 LINE CR1 1356 1460 -117 2190 94 20 0 chr15 17427837 17428134 -68267620 - AluSx SINE Alu -6 306 4 1864 140 3 29 chr15 17428757 17429064 -68266690 - AluSx SINE Alu -11 301 3 1926 106 0 0 chr15 17429078 17429342 -68266412 - AluSq SINE Alu -2 311 48 632 285 12 6 chr15 17429744 17429909 -68265845 - L3b LINE CR1 -198 1385 1220 1933 119 3 14 chr15 17431805 17432135 -68263619 - AluSx SINE Alu 0 327 1 367 209 11 22 chr15 17432140 17432231 -68263523 - MIR SINE MIR -105 157 68 287 25 25 0 chr15 17440782 17440822 -68254932 + (TG)n Simple_repeat Simple_repeat 2 42 0 233 315 11 0 chr15 17441083 17441175 -68254579 + L2 LINE L2 2966 3058 -214 1482 106 51 0 chr15 17441347 17441564 -68254190 + AluY SINE Alu 84 311 0 1871 141 47 0 chr15 17441574 17441872 -68253882 + AluSx SINE Alu 1 312 0 209 59 59 0 chr15 17441877 17441911 -68253843 + GA-rich Low_complexity Low_complexity 4 39 0 381 312 102 49 chr15 17443314 17443519 -68252235 - MIR SINE MIR -13 249 34 310 255 110 48 chr15 17446422 17446567 -68249187 - L1M4 LINE L1 -1408 4738 4585 2454 63 0 0 chr15 17446986 17447289 -68248465 + AluY SINE Alu 1 303 -8 23 97 0 0 chr15 17449475 17449547 -68246207 + GC_rich Low_complexity Low_complexity 1 72 0 3629 161 33 1 chr15 17450306 17450995 -68244759 - MER50 LTR ERV1 -23 711 1 1934 143 3 7 chr15 17452708 17453009 -68242745 + AluJb SINE Alu 1 300 -12 1003 171 0 6 chr15 17453009 17453173 -68242581 + AluJo/FRAM SINE Alu 134 296 -16 1744 148 14 3 chr15 17453176 17453459 -68242295 + AluJb SINE Alu 1 286 -26 555 320 96 9 chr15 17453675 17453894 -68241860 - MIR SINE MIR 0 262 25 2253 93 0 34 chr15 17454077 17454399 -68241355 - AluSx SINE Alu 0 312 2 338 252 113 53 chr15 17454632 17454783 -68240971 + L1MCa LINE L1 1896 2055 -4371 317 196 0 0 chr15 17454760 17454811 -68240943 - L1MC4 LINE L1 -1340 6702 6652 * 529 165 0 0 chr15 17454812 17454897 -68240857 - AluSg/x SINE Alu -11 298 214 876 88 95 54 chr15 17454897 17455044 -68240710 - AluSq SINE Alu -160 153 1 236 370 7 34 chr15 17455155 17455301 -68240453 + MIR3 SINE MIR 42 183 -25 425 296 112 36 chr15 17457299 17457522 -68238232 + MIR SINE MIR 23 262 0 2008 138 3 10 chr15 17457784 17458082 -68237672 - AluJb SINE Alu -15 297 2 23 33 0 0 chr15 17458082 17458112 -68237642 + AT_rich Low_complexity Low_complexity 1 30 0 345 320 10 32 chr15 17458387 17458715 -68237039 + GA-rich Low_complexity Low_complexity 1 320 0 268 261 97 62 chr15 17458840 17459016 -68236738 - L1ME LINE L1 -437 5684 5503 23 78 0 0 chr15 17460514 17460565 -68235189 + GC_rich Low_complexity Low_complexity 1 51 0 316 287 233 0 chr15 17461766 17461895 -68233859 - MER5A DNA MER1_type -24 165 7 2200 121 0 3 chr15 17461936 17462265 -68233489 - AluSx SINE Alu 0 312 1 1877 108 76 4 chr15 17462276 17462553 -68233201 - AluSx SINE Alu -15 297 1 204 125 0 0 chr15 17463777 17463809 -68231945 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 228 246 69 24 chr15 17464075 17464169 -68231585 - MER91B DNA MER1_type -37 103 1 1005 108 0 22 chr15 17464716 17464855 -68230899 + AluJo SINE Alu 1 136 -176 29 47 0 0 chr15 17465233 17465276 -68230478 + AT_rich Low_complexity Low_complexity 1 43 0 399 313 94 53 chr15 17465495 17465760 -68229994 - L2 LINE L2 -3 3269 2994 551 323 152 30 chr15 17466094 17466732 -68229022 - L2 LINE L2 -867 2447 1732 435 165 22 0 chr15 17466747 17466838 -68228916 - Charlie1 DNA MER1_type -20 2741 2649 2142 98 3 7 chr15 17466838 17467135 -68228619 + AluSx SINE Alu 7 302 -10 457 233 95 0 chr15 17468302 17468418 -68227336 - MER94 DNA DNA 0 134 8 3876 170 51 71 chr15 17468914 17470386 -68225368 + pTR5 LTR ERV1 263 2606 0 376 247 86 89 chr15 17471308 17471632 -68224122 + L2 LINE L2 2945 3267 -5 291 241 166 21 chr15 17471842 17471987 -68223767 + MIR3 SINE MIR 19 184 -24 426 303 37 6 chr15 17472009 17472171 -68223583 + MIR SINE MIR 20 186 -76 607 232 7 14 chr15 17472234 17472376 -68223378 - FLAM_C SINE Alu -1 142 2 278 286 95 37 chr15 17472383 17472491 -68223263 + L2 LINE L2 3114 3239 -74 2182 96 17 20 chr15 17472491 17472792 -68222962 - AluSx SINE Alu -12 300 1 278 286 95 37 chr15 17472792 17472872 -68222882 + L2 LINE L2 3239 3313 0 254 292 56 0 chr15 17473777 17473866 -68221888 + L1MC4a LINE L1 6079 6172 -1636 274 248 166 25 chr15 17474072 17474229 -68221525 - MER20B DNA MER1_type -75 708 530 652 229 7 0 chr15 17474232 17474372 -68221382 - AluY SINE Alu -18 293 153 2007 121 3 7 chr15 17475717 17476006 -68219748 - AluSx SINE Alu -24 288 1 739 186 0 0 chr15 17476068 17476186 -68219568 + FLAM_C SINE Alu 11 128 -15 250 129 32 16 chr15 17476272 17476334 -68219420 - L1ME4a LINE L1 -8 6113 6051 1630 165 3 53 chr15 17476343 17476646 -68219108 + AluJb SINE Alu 4 291 -21 645 214 0 8 chr15 17476801 17476932 -68218822 - FLAM_A SINE Alu -3 130 1 1548 155 52 65 chr15 17476966 17477256 -68218498 + AluJb SINE Alu 1 286 -26 645 238 33 8 chr15 17477490 17477699 -68218055 - L1ME4a LINE L1 -225 5896 5682 213 267 53 13 chr15 17478105 17478180 -68217574 + MER5A DNA MER1_type 4 81 -108 2412 61 14 0 chr15 17478321 17478614 -68217140 - AluSp SINE Alu -15 298 2 2251 87 10 0 chr15 17478619 17478918 -68216836 - AluY SINE Alu -9 302 1 1057 78 0 28 chr15 17478919 17479060 -68216694 - MER57-int LTR ERV1 -1000 6537 6401 856 113 8 16 chr15 17479063 17479187 -68216567 + AluSp SINE Alu 1 123 -190 30 27 0 0 chr15 17479374 17479411 -68216343 + AT_rich Low_complexity Low_complexity 1 37 0 462 136 38 98 chr15 17479738 17479870 -68215884 - MER69 DNA AcHobo -7 2519 2396 1965 144 10 22 chr15 17479884 17480197 -68215557 + AluJb SINE Alu 1 309 -3 332 171 12 61 chr15 17480235 17480317 -68215437 - MER116 DNA Mariner -1 79 2 2310 168 50 75 chr15 17480349 17480844 -68214910 - L1MB8 LINE L1 0 6178 5699 1858 158 3 7 chr15 17480844 17481148 -68214606 - AluSx SINE Alu -9 303 1 2310 168 50 75 chr15 17481148 17481235 -68214519 - L1MB8 LINE L1 -479 5699 5611 1145 219 31 89 chr15 17481241 17481656 -68214098 - MLT2D LTR ERVL -4 410 20 664 150 35 0 chr15 17481662 17481775 -68213979 - L1MB8 LINE L1 -568 5616 5500 322 186 117 76 chr15 17481780 17481925 -68213829 - MER69 DNA AcHobo -257 2269 2119 243 0 0 0 chr15 17482259 17482286 -68213468 + (CA)n Simple_repeat Simple_repeat 1 27 0 326 47 0 18 chr15 17482427 17482484 -68213270 + MLT2B3 LTR ERVL 1 54 -461 * 2101 172 14 19 chr15 17482472 17482839 -68212915 + MLT2B3 LTR ERVL 182 546 -8 2337 106 0 0 chr15 17483166 17483467 -68212287 - AluSx SINE Alu -11 301 1 276 272 150 35 chr15 17483528 17483699 -68212055 + MLT1J LTR MaLR 270 459 -2 1103 427 60 0 chr15 17484360 17484641 -68211113 - AluSc SINE Alu -1 298 1 718 156 8 23 chr15 17484745 17484873 -68210881 + AluJb SINE Alu 158 283 -29 275 230 20 50 chr15 17486882 17486982 -68208772 + MER5A DNA MER1_type 10 106 -83 1551 136 8 8 chr15 17491462 17491705 -68204049 - AluSx SINE Alu -17 295 53 863 137 0 14 chr15 17491906 17492045 -68203709 - LTR7 LTR ERV1 -313 137 1 1680 95 14 0 chr15 17492045 17492266 -68203488 - AluSg SINE Alu -86 224 1 800 177 27 21 chr15 17493211 17493397 -68202357 - AluSq SINE Alu -12 301 115 939 118 73 0 chr15 17493512 17493648 -68202106 - AluSp SINE Alu -167 146 1 341 320 32 8 chr15 17494061 17494186 -68201568 + L3 LINE CR1 1432 1559 -18 2101 89 9 92 chr15 17495997 17496324 -68199430 + AluSp SINE Alu 1 300 -13 2107 145 0 0 chr15 17496346 17496650 -68199104 + AluSx SINE Alu 3 306 -6 939 303 53 15 chr15 17497352 17497616 -68198138 - AluSq SINE Alu -39 274 1 341 320 32 8 chr15 17498027 17498152 -68197602 + L3 LINE CR1 1432 1559 -18 2101 89 9 92 chr15 17499961 17500288 -68195466 + AluSp SINE Alu 1 300 -13 1970 152 0 0 chr15 17500310 17500593 -68195161 + AluSx SINE Alu 3 285 -27 1833 138 15 0 chr15 17500700 17500969 -68194785 + AluSx SINE Alu 1 273 -39 297 100 0 0 chr15 17500989 17501039 -68194715 + (CA)n Simple_repeat Simple_repeat 2 51 0 1976 134 0 26 chr15 17501272 17501577 -68194177 - AluSx SINE Alu -15 297 1 2062 125 24 0 chr15 17501585 17501880 -68193874 - AluSx SINE Alu -9 303 2 2263 226 39 90 chr15 17502488 17503307 -68192447 - L1ME3 LINE L1 -19 6143 5367 356 284 60 8 chr15 17503333 17503467 -68192287 - L2 LINE L2 -454 2860 2720 2187 107 0 0 chr15 17504414 17504704 -68191050 + AluSx SINE Alu 1 290 -22 1839 159 0 32 chr15 17504736 17504878 -68190876 + AluJb SINE Alu 1 146 -166 2022 127 10 23 chr15 17504878 17505186 -68190568 + AluSx SINE Alu 5 308 -4 1839 159 0 32 chr15 17505186 17505358 -68190396 + AluJb SINE Alu 146 305 -7 2356 102 0 9 chr15 17505444 17505759 -68189995 + AluSq SINE Alu 1 312 -1 1587 147 0 95 chr15 17505797 17506103 -68189651 + AluJb SINE Alu 1 277 -35 572 260 64 4 chr15 17506103 17506338 -68189416 - L1ME LINE L1 -651 5513 5265 390 169 0 56 chr15 17506397 17506468 -68189286 - AluJ/FRAM SINE Alu -10 292 226 557 176 20 0 chr15 17506494 17506596 -68189158 - FLAM_C SINE Alu -38 105 2 786 266 73 15 chr15 17506699 17506973 -68188781 - L1ME LINE L1 -1232 4914 4625 697 213 0 14 chr15 17506985 17507126 -68188628 - FLAM_C SINE Alu -4 139 1 674 167 8 25 chr15 17507909 17508029 -68187725 + FLAM_C SINE Alu 2 119 -24 2162 113 20 3 chr15 17508879 17509181 -68186573 + AluSx SINE Alu 2 308 -4 2262 110 0 0 chr15 17509236 17509527 -68186227 - AluSx SINE Alu -21 291 1 22 0 0 0 chr15 17509654 17509676 -68186078 + AT_rich Low_complexity Low_complexity 1 22 0 1953 140 18 0 chr15 17509676 17509961 -68185793 - AluSx SINE Alu -22 290 1 1922 121 0 69 chr15 17510063 17510392 -68185362 - AluSx SINE Alu 0 308 1 515 220 9 18 chr15 17510891 17511000 -68184754 - MLT1F LTR MaLR -17 525 418 1237 153 14 92 chr15 17511006 17511300 -68184454 - AluSx SINE Alu 0 312 42 930 126 14 144 chr15 17511680 17511724 -68184030 + MER51B-int LTR ERV1 7623 7671 -145 2260 103 3 0 chr15 17511724 17512016 -68183738 + AluSg SINE Alu 1 293 -17 930 126 14 144 chr15 17512016 17512193 -68183561 + MER51B-int LTR ERV1 7671 7815 -1 1785 120 31 4 chr15 17512195 17512453 -68183301 + MER51B LTR ERV1 1 265 -112 2018 148 7 0 chr15 17512453 17512758 -68182996 - AluSx SINE Alu 0 312 6 2439 87 0 3 chr15 17512762 17513071 -68182683 - AluY SINE Alu -3 308 1 999 211 0 0 chr15 17513071 17513246 -68182508 - AluSg/x SINE Alu -16 296 122 386 200 29 0 chr15 17513246 17513316 -68182438 - AluJ/FLAM SINE Alu -230 72 1 1968 113 0 39 chr15 17514531 17514842 -68180912 - AluY SINE Alu -12 299 1 801 148 39 8 chr15 17515146 17515274 -68180480 + FRAM SINE Alu 34 165 -11 2220 111 13 0 chr15 17515548 17515854 -68179900 - AluSg SINE Alu 0 310 1 1488 21 0 2 chr15 17516494 17516699 -68179055 + (CTGTG)n Simple_repeat Simple_repeat 1 385 0 874 193 14 11 chr15 17516956 17517229 -68178525 + CT-rich Low_complexity Low_complexity 1 273 0 2215 112 10 0 chr15 17517645 17517941 -68177813 + AluSg SINE Alu 1 299 -11 2093 122 7 3 chr15 17517953 17518249 -68177505 + AluSx SINE Alu 1 297 -15 1776 99 13 0 chr15 17519749 17519982 -68175772 - AluSq SINE Alu -19 294 59 2226 119 0 0 chr15 17520180 17520475 -68175279 + AluSx SINE Alu 2 296 -16 1676 191 0 16 chr15 17522031 17522345 -68173409 - AluJb SINE Alu -3 309 1 888 251 14 14 chr15 17522857 17523068 -68172686 - AluJo SINE Alu -100 212 2 2023 150 0 0 chr15 17523607 17523907 -68171847 - AluSx SINE Alu -12 300 1 32 26 0 0 chr15 17525431 17525470 -68170284 + AT_rich Low_complexity Low_complexity 1 39 0 1683 138 7 34 chr15 17525551 17525847 -68169907 - AluY SINE Alu -9 302 15 1804 141 26 10 chr15 17526319 17526624 -68169130 - AluSx SINE Alu -2 310 1 345 197 0 0 chr15 17527253 17527314 -68168440 + MER50 LTR ERV1 497 557 -177 980 220 11 56 chr15 17527623 17527891 -68167863 + AluSx SINE Alu 21 276 -36 2353 101 0 0 chr15 17528042 17528338 -68167416 - AluSx SINE Alu -10 302 7 1971 138 10 16 chr15 17528699 17529011 -68166743 - AluSx SINE Alu -2 310 1 211 276 81 11 chr15 17529298 17529385 -68166369 - MER5A DNA MER1_type 0 189 97 545 190 224 0 chr15 17529665 17529781 -68165973 - MER46A DNA MER2_type -94 142 1 2472 62 0 0 chr15 17531601 17531892 -68163862 - AluY SINE Alu -20 291 1 21 0 0 0 chr15 17532901 17532922 -68162832 + AT_rich Low_complexity Low_complexity 1 21 0 1580 173 11 18 chr15 17534866 17535138 -68160616 + AluJb SINE Alu 30 299 -13 2033 138 6 34 chr15 17535858 17536178 -68159576 - AluSx SINE Alu -1 311 1 878 229 11 6 chr15 17536439 17536614 -68159140 - MER5B DNA MER1_type -1 177 2 306 67 0 0 chr15 17538713 17538758 -68156996 + (TTG)n Simple_repeat Simple_repeat 2 46 0 2202 99 17 0 chr15 17539254 17539547 -68156207 - AluSx SINE Alu -14 298 1 379 164 0 0 chr15 17540176 17540237 -68155517 + MER50 LTR ERV1 497 557 -177 425 226 218 24 chr15 17541261 17541385 -68154369 + MIR SINE MIR 16 163 -99 27 29 0 0 chr15 17541402 17541436 -68154318 + AT_rich Low_complexity Low_complexity 1 34 0 328 245 64 11 chr15 17541536 17541630 -68154124 + MIR SINE MIR 150 248 -14 1695 168 16 40 chr15 17541933 17542237 -68153517 + AluJo SINE Alu 1 297 -15 3256 14 0 3 chr15 17542247 17542601 -68153153 + L1PA3 LINE L1 5803 6155 0 360 288 150 7 chr15 17542648 17542702 -68153052 - MER5A DNA MER1_type -1 188 143 2034 138 7 0 chr15 17542702 17543000 -68152754 + AluSx SINE Alu 2 301 -11 360 288 150 7 chr15 17543000 17543098 -68152656 - MER5A DNA MER1_type -46 143 14 393 138 0 0 chr15 17543203 17543268 -68152486 - L1MA9 LINE L1 -6 6306 6242 1912 129 102 3 chr15 17543270 17543578 -68152176 - L1MA9 LINE L1 -181 6131 5784 285 29 0 0 chr15 17543578 17543612 -68152142 + (TG)n Simple_repeat Simple_repeat 2 35 0 1912 129 102 3 chr15 17543612 17543645 -68152109 - L1MA9 LINE L1 -528 5784 5756 1819 159 14 3 chr15 17543645 17543941 -68151813 - AluJb SINE Alu -13 299 1 2220 119 3 0 chr15 17544350 17544661 -68151093 + AluSx SINE Alu 1 312 0 180 0 0 0 chr15 17545853 17545873 -68149881 + (T)n Simple_repeat Simple_repeat 1 20 0 2027 152 7 0 chr15 17546611 17546920 -68148834 - AluSx SINE Alu -1 311 1 464 216 221 11 chr15 17548188 17548205 -68147549 - L1ME4a LINE L1 -69 6052 6040 2444 84 3 0 chr15 17548205 17548514 -68147240 + AluSx SINE Alu 3 312 0 464 216 221 11 chr15 17548514 17548686 -68147068 - L1ME4a LINE L1 -81 6040 5823 2320 84 0 50 chr15 17548688 17549010 -68146744 - AluY SINE Alu -5 306 1 389 226 61 9 chr15 17549103 17549218 -68146536 - L1ME4a LINE L1 -419 5702 5582 246 196 20 0 chr15 17550394 17550445 -68145309 - L2 LINE L2 -1 3271 3220 1864 148 3 41 chr15 17551103 17551420 -68144334 - AluJb SINE Alu -7 305 1 1339 181 8 39 chr15 17551730 17551989 -68143765 - AluJo SINE Alu -25 287 37 185 273 36 0 chr15 17552498 17552553 -68143201 - MIR SINE MIR -62 146 90 873 112 46 40 chr15 17553407 17553559 -68142195 - AluSp SINE Alu -122 191 39 2517 119 27 9 chr15 17553559 17554093 -68141661 - MER57-int LTR ERV1 -1201 6336 5747 1980 111 0 77 chr15 17554094 17554419 -68141335 + AluSx SINE Alu 1 300 -12 326 103 184 92 chr15 17554419 17554506 -68141248 - MER57-int LTR ERV1 -2194 5343 5249 * 2139 94 5 4 chr15 17554505 17554895 -68140859 - MER57-int LTR ERV1 -2572 2645 2211 1960 162 0 0 chr15 17554963 17555260 -68140494 - AluSx SINE Alu -13 299 3 2069 139 3 0 chr15 17555272 17555566 -68140188 - AluSx SINE Alu -17 295 1 1339 181 8 39 chr15 17555876 17556135 -68139619 - AluJo SINE Alu -25 287 37 185 273 36 0 chr15 17556644 17556699 -68139055 - MIR SINE MIR -62 146 90 278 252 96 7 chr15 17556782 17556917 -68138837 + MER112 DNA MER1_type 29 175 -85 333 0 0 0 chr15 17556959 17556996 -68138758 + (TG)n Simple_repeat Simple_repeat 2 38 0 2098 90 23 30 chr15 17557026 17557327 -68138427 + AluSx SINE Alu 2 300 -12 187 208 21 21 chr15 17557611 17557659 -68138095 + MIR SINE MIR 106 153 -55 2364 89 0 3 chr15 17557659 17557963 -68137791 + AluSg SINE Alu 1 303 -7 2057 145 0 3 chr15 17558682 17558985 -68136769 - AluJb SINE Alu -10 302 1 374 214 48 12 chr15 17559002 17559086 -68136668 - L2 LINE L2 -3 3310 3224 2037 100 10 17 chr15 17559356 17559647 -68136107 + AluSc SINE Alu 1 289 -20 180 0 0 0 chr15 17559923 17559943 -68135811 + (TC)n Simple_repeat Simple_repeat 1 20 0 288 354 70 50 chr15 17560414 17560730 -68135024 + L2 LINE L2 2716 3051 -221 1899 121 0 0 chr15 17560824 17561081 -68134673 + AluSx SINE Alu 1 257 -55 213 94 0 0 chr15 17561111 17561143 -68134611 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1310 256 66 49 chr15 17561143 17561315 -68134439 - L2 LINE L2 -13 3300 3132 2223 104 0 10 chr15 17561315 17561614 -68134140 + AluSg SINE Alu 1 296 -14 1310 256 66 49 chr15 17561614 17562110 -68133644 - L2 LINE L2 -181 3132 2625 251 233 94 138 chr15 17562110 17562198 -68133556 - L2 LINE L2 -989 2325 2246 2253 118 0 3 chr15 17562198 17562511 -68133243 - AluSx SINE Alu 0 312 1 251 233 94 138 chr15 17562511 17562581 -68133173 - L2 LINE L2 -1068 2246 2174 1674 187 0 7 chr15 17562892 17563192 -68132562 + AluJo SINE Alu 1 298 -14 1455 161 23 23 chr15 17563911 17564210 -68131544 + AluSc SINE Alu 1 299 -10 254 211 10 93 chr15 17564540 17564734 -68131020 + T-rich Low_complexity Low_complexity 2 179 0 472 250 14 29 chr15 17564752 17564892 -68130862 + AluYa5 SINE Alu 163 300 -11 1002 209 0 0 chr15 17566140 17566298 -68129456 + FRAM SINE Alu 1 158 -8 352 154 0 0 chr15 17566926 17566978 -68128776 + AluSq SINE Alu 140 191 -112 895 199 0 6 chr15 17567476 17567632 -68128122 - AluJo/FRAM SINE Alu -11 291 137 1448 155 7 37 chr15 17567635 17567931 -68127823 - AluSx SINE Alu -15 297 11 462 235 26 9 chr15 17567961 17568076 -68127678 - FLAM_C SINE Alu -16 117 1 1488 163 0 4 chr15 17568202 17568429 -68127325 - AluSx SINE Alu -84 228 3 999 132 0 0 chr15 17568430 17568566 -68127188 - AluSq/x SINE Alu -176 136 1 829 171 0 0 chr15 17568568 17568697 -68127057 - AluJb SINE Alu -20 292 164 246 325 0 0 chr15 17568714 17568785 -68126969 + MIR SINE MIR 79 150 -58 289 167 0 0 chr15 17570231 17570279 -68125475 + Alu SINE Alu 1 48 -253 2166 108 7 0 chr15 17570688 17570985 -68124769 + AluSg SINE Alu 1 299 -11 235 392 8 0 chr15 17571111 17571236 -68124518 + L2 LINE L2 2934 3059 -213 1704 155 0 52 chr15 17571366 17571510 -68124244 + AluJo SINE Alu 1 122 -190 2307 92 0 19 chr15 17571510 17571825 -68123929 + AluSc SINE Alu 1 309 0 1704 155 0 52 chr15 17571825 17571990 -68123764 + AluJo SINE Alu 122 294 -18 1892 175 0 0 chr15 17572234 17572537 -68123217 + AluJo SINE Alu 7 309 -3 959 198 16 62 chr15 17572580 17572822 -68122932 + AluJb SINE Alu 1 231 -81 2049 152 7 0 chr15 17573543 17573853 -68121901 - AluSx SINE Alu 0 312 1 327 214 167 30 chr15 17575071 17575137 -68120617 - L1ME4a LINE L1 -4 6117 6061 2452 77 3 0 chr15 17575137 17575437 -68120317 + AluSx SINE Alu 3 303 -9 327 214 167 30 chr15 17575437 17575538 -68120216 - L1ME4a LINE L1 -60 6061 5927 268 308 16 28 chr15 17575636 17575818 -68119936 - AluY SINE Alu -7 294 115 22 0 0 0 chr15 17575943 17575965 -68119789 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr15 17576185 17576211 -68119543 + AT_rich Low_complexity Low_complexity 1 26 0 237 294 59 15 chr15 17576368 17576504 -68119250 + FRAM SINE Alu 21 162 -4 2343 88 0 3 chr15 17576836 17577133 -68118621 + AluSg SINE Alu 7 302 -8 2077 145 0 3 chr15 17577853 17578156 -68117598 - AluJb SINE Alu -10 302 1 346 214 48 12 chr15 17578173 17578257 -68117497 - L2 LINE L2 -3 3310 3224 2062 100 10 17 chr15 17578527 17578818 -68116936 + AluSc SINE Alu 1 289 -20 180 0 0 0 chr15 17579094 17579114 -68116640 + (TC)n Simple_repeat Simple_repeat 1 20 0 220 346 99 37 chr15 17579585 17579899 -68115855 + L2 LINE L2 2716 3051 -221 340 263 14 94 chr15 17580493 17580706 -68115048 + AluSp SINE Alu 108 303 0 250 310 103 7 chr15 17580854 17581009 -68114745 + AluSp SINE Alu 121 290 -13 1995 158 0 0 chr15 17581033 17581330 -68114424 + AluSx SINE Alu 3 299 -13 269 152 23 126 chr15 17581330 17581417 -68114337 + MER57-int LTR ERV1 1902 4693 -2303 * 2115 111 34 3 chr15 17581396 17581786 -68113968 + MER57-int LTR ERV1 2211 5004 -2533 319 103 184 92 chr15 17581785 17581872 -68113882 + MER57-int LTR ERV1 5249 5343 -2194 * 1998 111 0 77 chr15 17581872 17582197 -68113557 - AluSx SINE Alu -12 300 1 2687 120 27 7 chr15 17582198 17582730 -68113024 + MER57-int LTR ERV1 5747 6334 -1203 2016 107 0 0 chr15 17582730 17582993 -68112761 + AluSg SINE Alu 37 299 -11 1365 141 0 0 chr15 17582993 17583191 -68112563 + AluSx SINE Alu 29 226 -86 863 146 8 18 chr15 17583191 17583359 -68112395 + LTR7 LTR ERV1 1 218 -232 780 126 40 60 chr15 17583561 17583712 -68112042 + LTR7 LTR ERV1 303 450 0 2020 175 93 24 chr15 17583712 17584175 -68111579 + HERVH LTR ERV1 1 495 -7218 16500 174 21 48 chr15 17584199 17587028 -68108726 + HERVH LTR ERV1 778 3107 -4439 2201 114 0 29 chr15 17587028 17587344 -68108410 + AluY SINE Alu 1 307 -4 16500 174 21 48 chr15 17587344 17588542 -68107212 + HERVH LTR ERV1 3107 4336 -3210 1153 142 5 0 chr15 17588530 17588720 -68107034 + HERVH LTR ERV1 6758 6948 -765 * 3683 89 9 43 chr15 17588771 17589331 -68106423 + HERVH LTR ERV1 7173 7713 0 897 120 8 18 chr15 17589331 17589499 -68106255 + LTR7 LTR ERV1 1 218 -232 1048 124 59 0 chr15 17589520 17589673 -68106081 - AluSx SINE Alu -150 162 1 444 271 77 0 chr15 17589705 17589860 -68105894 + L1M4 LINE L1 4420 4586 -1560 2153 123 0 13 chr15 17589860 17590169 -68105585 - AluSx SINE Alu -7 305 1 1632 128 30 8 chr15 17590171 17590431 -68105323 - AluSp SINE Alu 0 313 52 1555 149 8 0 chr15 17590431 17590665 -68105089 + AluSg SINE Alu 64 300 -10 25 0 0 0 chr15 17590665 17590690 -68105064 + AT_rich Low_complexity Low_complexity 1 25 0 1998 148 7 0 chr15 17590742 17591069 -68104685 + AluSx SINE Alu 1 312 0 3051 149 33 38 chr15 17591070 17591300 -68104454 + MER41B LTR ERV1 1 231 -404 2425 84 7 0 chr15 17591300 17591608 -68104146 + AluSq SINE Alu 1 310 -3 3051 149 33 38 chr15 17591608 17591928 -68103826 + MER41B LTR ERV1 231 548 -87 332 95 0 48 chr15 17591940 17592003 -68103751 - L1MA3 LINE L1 0 6305 6246 2224 116 0 0 chr15 17592034 17592327 -68103427 + AluSq SINE Alu 5 297 -16 900 106 57 0 chr15 17592413 17592554 -68103200 - L1PB1 LINE L1 -4 6147 5999 1974 134 62 0 chr15 17592557 17592847 -68102907 - AluSx SINE Alu -4 308 1 551 187 9 0 chr15 17592850 17592957 -68102797 + MER41A LTR ERV1 439 546 -8 456 277 0 0 chr15 17592969 17593099 -68102655 + L1M4 LINE L1 4672 4801 -1345 483 108 0 117 chr15 17593100 17593144 -68102610 + LTR8A LTR ERV1 1 49 -678 2124 131 13 0 chr15 17593144 17593450 -68102304 + AluSx SINE Alu 1 310 -2 483 108 0 117 chr15 17593450 17593516 -68102238 + LTR8A LTR ERV1 49 98 -629 * 789 112 8 8 chr15 17593508 17593633 -68102121 + LTR9B LTR ERV1 437 561 -83 1819 106 0 0 chr15 17593684 17593930 -68101824 + AluSg SINE Alu 53 298 -12 1830 152 79 75 chr15 17593931 17594286 -68101468 + LTR8A LTR ERV1 214 566 -125 1818 127 25 7 chr15 17594286 17594561 -68101193 + AluSx SINE Alu 1 280 -32 192 97 0 0 chr15 17594561 17594592 -68101162 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1830 152 79 75 chr15 17594592 17594709 -68101045 + LTR8A LTR ERV1 565 644 -47 318 85 489 0 chr15 17594738 17594832 -68100922 - L1MB7 LINE L1 -12 6172 6033 192 77 0 0 chr15 17594864 17594890 -68100864 + (A)n Simple_repeat Simple_repeat 1 26 0 499 160 0 0 chr15 17594897 17594972 -68100782 + AluS SINE Alu 2 76 -236 2488 99 55 22 chr15 17594972 17595079 -68100675 - MER51B LTR ERV1 0 377 275 1993 146 10 0 chr15 17595079 17595388 -68100366 + AluSx SINE Alu 1 312 0 2488 99 55 22 chr15 17595388 17595645 -68100109 - MER51B LTR ERV1 -102 275 1 918 132 26 141 chr15 17595647 17595824 -68099930 - MER51B-int LTR ERV1 -1 7815 7668 2280 102 0 0 chr15 17595824 17596117 -68099637 - AluSg SINE Alu -17 293 1 918 132 26 141 chr15 17596117 17596166 -68099588 - MER51B-int LTR ERV1 -148 7668 7615 271 298 0 0 chr15 17596205 17596289 -68099465 - AluY SINE Alu -96 205 122 1277 110 0 0 chr15 17596684 17596848 -68098906 - AluSg/x SINE Alu -19 293 130 1842 188 0 6 chr15 17596852 17597166 -68098588 - 7SLRNA srpRNA srpRNA -8 312 1 2046 127 7 7 chr15 17597193 17597493 -68098261 - AluSc SINE Alu -7 302 3 1852 154 6 41 chr15 17597500 17597688 -68098066 - AluJo SINE Alu 0 312 138 2389 45 41 3 chr15 17597688 17597979 -68097775 - AluY SINE Alu -9 302 1 1852 154 6 41 chr15 17597979 17598108 -68097646 - AluJo SINE Alu -174 138 6 539 211 9 0 chr15 17598242 17598351 -68097403 + FLAM_A SINE Alu 21 130 -12 1793 159 3 23 chr15 17598353 17598654 -68097100 + AluJo SINE Alu 1 295 -17 29 0 0 0 chr15 17598701 17598730 -68097024 + AT_rich Low_complexity Low_complexity 1 29 0 2300 148 63 63 chr15 17598735 17598895 -68096859 + MLT1D LTR MaLR 1 160 -345 2492 87 0 0 chr15 17598895 17599206 -68096548 - AluY SINE Alu 0 311 1 2300 148 63 63 chr15 17599206 17599550 -68096204 + MLT1D LTR MaLR 159 505 0 466 243 0 0 chr15 17600035 17600138 -68095616 + FLAM_A SINE Alu 35 137 -5 23 0 0 0 chr15 17600559 17600582 -68095172 + AT_rich Low_complexity Low_complexity 1 23 0 1068 128 7 0 chr15 17601040 17601208 -68094546 - AluSg/x SINE Alu 0 302 134 2396 96 0 0 chr15 17601208 17601510 -68094244 - AluSg SINE Alu -8 302 1 1393 135 0 0 chr15 17601513 17601713 -68094041 - MER51-int LTR ERV1 -150 7666 7467 2231 105 3 6 chr15 17601730 17602043 -68093711 + AluSx SINE Alu 1 312 0 551 158 11 0 chr15 17602082 17602177 -68093577 - LTR54B LTR ERV1 -399 99 4 6414 112 78 43 chr15 17602177 17602506 -68093248 - MER51-int LTR ERV1 -655 6882 6566 2202 123 0 3 chr15 17602506 17602807 -68092947 - AluSg SINE Alu -10 300 1 6414 112 78 43 chr15 17602807 17602952 -68092802 - MER51-int LTR ERV1 -971 6566 6427 1609 109 60 84 chr15 17602952 17603098 -68092656 + AluSp SINE Alu 1 138 -175 2268 80 17 0 chr15 17603098 17603222 -68092532 + AluY SINE Alu 1 121 -190 474 101 0 0 chr15 17603222 17603291 -68092463 + (CA)n Simple_repeat Simple_repeat 2 70 0 2268 80 17 0 chr15 17603291 17603455 -68092299 + AluY SINE Alu 121 294 -17 1609 109 60 84 chr15 17603455 17603592 -68092162 + AluSp SINE Alu 138 277 -36 2101 107 3 17 chr15 17603593 17603891 -68091863 + AluSp SINE Alu 1 294 -19 6414 112 78 43 chr15 17603891 17603979 -68091775 - MER51-int LTR ERV1 -1110 6427 6344 2254 73 0 0 chr15 17603979 17604253 -68091501 - AluSg SINE Alu 0 310 37 6414 112 78 43 chr15 17604253 17604756 -68090998 - MER51-int LTR ERV1 -1193 6344 5776 1913 112 6 78 chr15 17604784 17605105 -68090649 + AluSx SINE Alu 3 300 -12 319 103 184 92 chr15 17605105 17605192 -68090562 - MER51-int LTR ERV1 -2194 5343 5249 * 2052 98 5 6 chr15 17605191 17605582 -68090172 - MER51-int LTR ERV1 -2572 2645 2211 304 244 0 0 chr15 17605709 17605795 -68089959 + C-rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr15 17605895 17605916 -68089838 + AT_rich Low_complexity Low_complexity 1 21 0 2120 73 0 8 chr15 17605954 17606215 -68089539 + AluSg SINE Alu 30 288 -22 2168 113 13 13 chr15 17606226 17606535 -68089219 + AluSp SINE Alu 1 309 -4 2037 131 0 0 chr15 17606722 17607005 -68088749 + AluSx SINE Alu 28 310 -2 784 162 0 22 chr15 17607215 17607351 -68088403 + FLAM_C SINE Alu 1 133 0 2210 133 0 0 chr15 17607437 17607739 -68088015 + AluSx SINE Alu 1 302 -10 1324 140 144 11 chr15 17607913 17608203 -68087551 - MSTA LTR MaLR -91 335 1 248 298 36 12 chr15 17608205 17608289 -68087465 - LTR67 LTR ERVL -44 513 428 207 0 0 0 chr15 17608393 17608416 -68087338 + (TA)n Simple_repeat Simple_repeat 2 24 0 206 269 60 0 chr15 17609423 17609490 -68086264 + MIR SINE MIR 191 261 -1 2180 116 0 0 chr15 17609705 17609998 -68085756 + AluSc SINE Alu 1 293 -16 2178 110 10 0 chr15 17610082 17610382 -68085372 - AluSp SINE Alu -10 303 1 2094 125 0 10 chr15 17610465 17610770 -68084984 + AluSx SINE Alu 1 302 -10 350 320 26 0 chr15 17610789 17610942 -68084812 + L1M4 LINE L1 3289 3445 -2701 2291 116 0 3 chr15 17610950 17611252 -68084502 + AluSx SINE Alu 1 301 -11 2140 118 23 3 chr15 17611295 17611599 -68084155 + AluSx SINE Alu 1 310 -2 1612 181 14 10 chr15 17611685 17611973 -68083781 + AluJo SINE Alu 1 289 -23 899 114 0 0 chr15 17611983 17612097 -68083657 + AluSg/x SINE Alu 173 286 -26 34 42 0 0 chr15 17612097 17612145 -68083609 + AT_rich Low_complexity Low_complexity 1 48 0 252 0 0 0 chr15 17612473 17612501 -68083253 + (A)n Simple_repeat Simple_repeat 1 28 0 974 213 12 47 chr15 17612590 17612848 -68082906 + AluJb SINE Alu 43 291 -21 597 218 129 87 chr15 17612862 17612920 -68082834 + L1MC5 LINE L1 7517 7571 -390 2406 86 0 0 chr15 17612920 17613211 -68082543 - AluY SINE Alu -20 291 1 597 218 129 87 chr15 17613211 17613533 -68082221 + L1MC5 LINE L1 7571 7913 -48 2102 128 3 0 chr15 17614454 17614744 -68081010 - AluSx SINE Alu -21 291 1 839 229 37 16 chr15 17615535 17615723 -68080031 + MER58A DNA MER1_type 2 193 -31 1669 197 3 13 chr15 17615738 17616053 -68079701 - AluJb SINE Alu 0 312 1 1578 132 73 38 chr15 17616998 17617285 -68078469 + AluJb SINE Alu 2 298 -14 2348 93 0 0 chr15 17617335 17617635 -68078119 + AluSq SINE Alu 14 313 0 730 136 8 30 chr15 17618191 17618323 -68077431 + FLAM_C SINE Alu 5 133 0 366 23 0 0 chr15 17618359 17618402 -68077352 + (TG)n Simple_repeat Simple_repeat 2 44 0 1779 169 41 0 chr15 17618754 17618929 -68076825 - AluJb SINE Alu -5 307 114 189 0 0 0 chr15 17618929 17618950 -68076804 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 1779 169 41 0 chr15 17618950 17619069 -68076685 - AluJb SINE Alu -198 114 1 1881 106 3 94 chr15 17619150 17619470 -68076284 + AluJb SINE Alu 1 291 -21 1790 86 126 11 chr15 17620114 17620383 -68075371 + AluSg1 SINE Alu 1 300 -9 25 0 0 0 chr15 17620798 17620823 -68074931 + AT_rich Low_complexity Low_complexity 1 25 0 1825 166 24 0 chr15 17620832 17621127 -68074627 + AluJb SINE Alu 1 302 -10 2006 121 0 56 chr15 17621132 17621454 -68074300 + AluSg SINE Alu 1 304 -6 533 266 23 22 chr15 17621466 17621717 -68074037 + L1ME LINE L1 769 1304 -4697 27 0 0 0 chr15 17622051 17622078 -68073676 + AT_rich Low_complexity Low_complexity 1 27 0 524 141 0 3 chr15 17622127 17622368 -68073386 + AluSx SINE Alu 1 307 -2 892 246 108 38 chr15 17622379 17622720 -68073034 + MLT1A1 LTR MaLR 1 365 0 258 111 74 19 chr15 17622790 17622844 -68072910 + MER4D LTR ERV1 777 833 -70 2147 129 0 28 chr15 17622866 17623183 -68072571 + AluSx SINE Alu 5 312 0 2242 84 21 0 chr15 17623299 17623586 -68072168 + AluSx SINE Alu 1 293 -19 1088 254 115 8 chr15 17623699 17624179 -68071575 + L1ME LINE L1 2269 2799 -3281 724 132 0 35 chr15 17624189 17624303 -68071451 - FRAM SINE Alu -18 158 49 539 256 66 5 chr15 17624306 17624517 -68071237 + L1ME LINE L1 2803 3026 -3054 1755 175 0 7 chr15 17624522 17624814 -68070940 + AluSx SINE Alu 1 290 -22 292 211 14 0 chr15 17624891 17624962 -68070792 - MER58 DNA MER1_type -2307 113 42 2297 107 10 0 chr15 17624963 17625271 -68070483 + AluSx SINE Alu 1 311 -1 2694 174 56 14 chr15 17625280 17625796 -68069958 + L1MB5 LINE L1 5585 6122 -52 2209 90 52 0 chr15 17625796 17626085 -68069669 - AluSp SINE Alu -9 304 1 940 204 24 0 chr15 17626097 17626264 -68069490 - AluJb SINE Alu -141 171 1 283 151 0 0 chr15 17626271 17626324 -68069430 + L1MB4 LINE L1 6128 6180 0 1468 184 16 20 chr15 17626362 17626667 -68069087 + AluJo SINE Alu 9 312 0 2339 99 3 0 chr15 17626879 17627181 -68068573 - AluSg SINE Alu -7 303 1 735 177 8 0 chr15 17627948 17628078 -68067676 + AluJo/FLAM SINE Alu 2 132 -180 2064 124 3 23 chr15 17628080 17628379 -68067375 + AluSp SINE Alu 1 293 -20 2105 133 0 7 chr15 17628383 17628683 -68067071 + AluSx SINE Alu 1 298 -14 1466 133 0 131 chr15 17628939 17629276 -68066478 - AluSg SINE Alu -17 293 1 223 222 56 139 chr15 17629838 17629982 -68065772 - MIR SINE MIR -73 189 58 1929 157 10 0 chr15 17630695 17630989 -68064765 + AluJo SINE Alu 1 297 -15 1153 48 0 0 chr15 17631054 17631199 -68064555 - L1PA5 LINE L1 -3 6151 6007 2333 101 3 22 chr15 17631249 17631566 -68064188 - AluSp SINE Alu -2 311 1 201 154 0 0 chr15 17631873 17631912 -68063842 + A-rich Low_complexity Low_complexity 1 39 0 1521 71 0 0 chr15 17632244 17632427 -68063327 + AluSc SINE Alu 1 183 -126 189 0 0 0 chr15 17632467 17632488 -68063266 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 2380 75 3 0 chr15 17632587 17632882 -68062872 - AluY SINE Alu -13 298 3 1804 149 31 3 chr15 17634554 17634842 -68060912 - AluSx SINE Alu -15 297 2 1512 137 6 128 chr15 17635077 17635279 -68060475 - AluSx SINE Alu -1 301 157 2170 107 0 0 chr15 17635279 17635560 -68060194 - AluY SINE Alu -30 281 1 1512 137 6 128 chr15 17635560 17635700 -68060054 - AluSx SINE Alu -145 157 1 1901 162 0 0 chr15 17635829 17636113 -68059641 - AluSx SINE Alu -26 286 3 2212 112 3 0 chr15 17636125 17636420 -68059334 - AluSq SINE Alu -17 296 1 2215 92 13 29 chr15 17636430 17636744 -68059010 - AluSp SINE Alu -4 309 1 2073 146 55 10 chr15 17636750 17637150 -68058604 - MER41-int LTR ERV1 -2344 4652 2820 * 4900 103 133 1 chr15 17637122 17637948 -68057806 - MER41-int LTR ERV1 -4489 3327 2393 4940 98 6 20 chr15 17637949 17638533 -68057221 + LTR8 LTR ERV1 1 575 -116 2294 91 3 3 chr15 17638533 17638830 -68056924 + AluSg SINE Alu 5 301 -9 4940 98 6 20 chr15 17638830 17638938 -68056816 + LTR8 LTR ERV1 575 683 -8 4478 138 50 31 chr15 17638940 17640287 -68055467 + pTR5 LTR ERV1 741 2437 -1 700 106 139 0 chr15 17640299 17640450 -68055304 - MER41-int LTR ERV1 -5421 2395 2224 * 728 95 135 7 chr15 17640434 17640582 -68055172 - MER41-int LTR ERV1 -5697 2119 1953 1137 106 0 0 chr15 17640604 17640745 -68055009 - AluSg/x SINE Alu -27 283 143 989 186 14 59 chr15 17640859 17641080 -68054674 - AluJo SINE Alu -15 297 87 1491 140 132 4 chr15 17641236 17641486 -68054268 - AluJb SINE Alu -30 282 1 2498 64 0 6 chr15 17641587 17641901 -68053853 + AluSq SINE Alu 1 312 -1 1776 156 14 3 chr15 17642271 17642560 -68053194 - AluSc SINE Alu -13 296 5 227 216 0 0 chr15 17642716 17642753 -68053001 + Alu SINE Alu 230 266 -37 34 42 0 0 chr15 17643041 17643089 -68052665 + AT_rich Low_complexity Low_complexity 1 48 0 899 114 0 0 chr15 17643089 17643203 -68052551 - AluSg/x SINE Alu -26 286 173 1612 181 14 10 chr15 17643213 17643501 -68052253 - AluJo SINE Alu -23 289 1 2333 109 0 3 chr15 17643587 17643898 -68051856 - AluSx SINE Alu -2 310 1 620 220 38 0 chr15 17643939 17644098 -68051656 + L1MD3 LINE L1 7737 7901 -94 1598 122 24 116 chr15 17644099 17644427 -68051327 + AluYb8 SINE Alu 5 302 -16 377 143 14 0 chr15 17644462 17644532 -68051222 + L1MA5A LINE L1 6222 6292 -5 494 139 25 0 chr15 17644544 17644623 -68051131 + AluSx SINE Alu 2 82 -230 1506 140 0 9 chr15 17644798 17645026 -68050728 + AluSx SINE Alu 70 295 -15 2398 103 0 0 chr15 17645026 17645336 -68050418 + AluSg SINE Alu 1 310 0 530 181 4 2 chr15 17645359 17645448 -68050306 + L1MD3 LINE L1 6261 6348 -1637 692 168 38 23 chr15 17645448 17645579 -68050175 + FLAM_C SINE Alu 1 133 0 2205 133 0 0 chr15 17645589 17645898 -68049856 + AluSx SINE Alu 1 309 -3 2195 132 0 3 chr15 17645907 17646218 -68049536 + AluSx SINE Alu 1 310 -2 571 270 129 22 chr15 17646224 17646535 -68049219 + L1ME LINE L1 4749 5092 -1054 2374 112 0 0 chr15 17646537 17646849 -68048905 + AluSx SINE Alu 1 312 0 1135 207 3 116 chr15 17646858 17647187 -68048567 - AluJo SINE Alu -9 293 2 36 0 0 0 chr15 17647187 17647223 -68048531 + AT_rich Low_complexity Low_complexity 1 36 0 318 128 21 0 chr15 17647228 17647275 -68048479 + Alu SINE Alu 5 52 -250 30 0 0 0 chr15 17647285 17647315 -68048439 + AT_rich Low_complexity Low_complexity 1 30 0 2134 121 0 0 chr15 17647438 17647747 -68048007 + AluSx SINE Alu 5 313 0 532 270 178 2 chr15 17647748 17647968 -68047786 + L1ME LINE L1 5483 5735 -431 2020 128 7 0 chr15 17648005 17648302 -68047452 - AluSg SINE Alu -11 299 1 23 68 0 0 chr15 17648712 17648756 -68046998 + AT_rich Low_complexity Low_complexity 1 44 0 1300 240 130 18 chr15 17649478 17649870 -68045884 - LTR33A LTR ERVL 0 523 88 297 342 36 0 chr15 17649897 17650008 -68045746 + L3 LINE CR1 1192 1306 -271 2395 95 3 0 chr15 17650029 17650333 -68045421 + AluSg SINE Alu 1 305 -5 384 167 15 0 chr15 17650506 17650572 -68045182 - MLT1F1 LTR MaLR 0 567 501 2496 46 0 16 chr15 17650906 17651213 -68044541 + AluY SINE Alu 1 302 -9 2313 43 50 0 chr15 17652221 17652501 -68043253 - AluYa5 SINE Alu -17 294 1 24 0 0 0 chr15 17652791 17652815 -68042939 + AT_rich Low_complexity Low_complexity 1 24 0 1073 233 96 52 chr15 17653057 17653422 -68042332 - MLT1F1 LTR MaLR -52 515 135 621 202 9 0 chr15 17654054 17654168 -68041586 + FLAM_C SINE Alu 1 115 -28 1102 118 13 0 chr15 17654184 17654337 -68041417 - AluSg/x SINE Alu -21 289 135 2337 105 0 0 chr15 17654350 17654646 -68041108 - AluSg SINE Alu -14 296 1 1126 160 11 0 chr15 17654661 17654836 -68040918 + AluJb SINE Alu 130 306 -6 634 157 107 8 chr15 17654901 17655022 -68040732 + FLAM_C SINE Alu 1 133 0 1476 163 37 4 chr15 17655126 17655371 -68040383 + AluJo SINE Alu 43 295 -17 2216 99 14 0 chr15 17655378 17655671 -68040083 + AluSp SINE Alu 1 297 -16 312 332 79 52 chr15 17655760 17655834 -68039920 + L2 LINE L2 2026 2097 -1217 2334 69 14 7 chr15 17655834 17656125 -68039629 - AluY SINE Alu -16 295 3 2311 97 3 7 chr15 17656134 17656434 -68039320 - AluSp SINE Alu -14 299 1 312 332 79 52 chr15 17656434 17656981 -68038773 + L2 LINE L2 2104 2674 -640 2240 113 3 0 chr15 17657351 17657653 -68038101 - AluSg SINE Alu -7 303 1 223 222 56 139 chr15 17658215 17658359 -68037395 - MIR SINE MIR -73 189 58 1929 157 10 0 chr15 17659073 17659367 -68036387 + AluJo SINE Alu 1 297 -15 1205 35 0 0 chr15 17659432 17659577 -68036177 - L1PA5 LINE L1 -3 6151 6007 2104 119 3 31 chr15 17659627 17659947 -68035807 - AluSp SINE Alu -2 311 1 201 154 0 0 chr15 17660254 17660293 -68035461 + A-rich Low_complexity Low_complexity 1 39 0 1521 71 0 0 chr15 17660625 17660808 -68034946 + AluSc SINE Alu 1 183 -126 236 145 24 121 chr15 17661694 17661777 -68033977 + AluY SINE Alu 106 180 -121 37 23 0 0 chr15 17661805 17661849 -68033905 + AT_rich Low_complexity Low_complexity 1 44 0 2380 75 3 0 chr15 17661952 17662247 -68033507 - AluY SINE Alu -13 298 3 1792 145 31 7 chr15 17663921 17664210 -68031544 - AluSx SINE Alu -15 297 2 1631 126 6 126 chr15 17664445 17664647 -68031107 - AluSx SINE Alu -1 301 155 2170 107 0 0 chr15 17664647 17664928 -68030826 - AluY SINE Alu -30 281 1 1631 126 6 126 chr15 17664928 17665067 -68030687 - AluSx SINE Alu -147 155 1 2076 125 4 0 chr15 17665253 17665559 -68030195 + AluSx SINE Alu 1 307 0 1335 190 0 0 chr15 17665686 17665907 -68029847 + AluJo SINE Alu 53 273 -39 2319 102 0 0 chr15 17666077 17666381 -68029373 - AluY SINE Alu -7 304 1 1447 222 17 10 chr15 17666738 17667031 -68028723 - AluJb SINE Alu -17 295 1 2365 81 3 3 chr15 17667078 17667373 -68028381 - AluSg SINE Alu -15 295 1 2148 120 17 3 chr15 17668034 17668334 -68027420 + AluSq SINE Alu 1 304 -9 527 191 0 9 chr15 17668668 17668773 -68026981 + FLAM_C SINE Alu 40 143 0 332 244 98 16 chr15 17669422 17669545 -68026209 - MIR SINE MIR -61 201 69 2150 101 27 3 chr15 17669749 17670047 -68025707 + AluSx SINE Alu 1 305 -7 277 239 106 26 chr15 17670948 17671061 -68024693 - MER51B LTR ERV1 -240 137 16 2027 126 0 3 chr15 17671256 17671550 -68024204 - AluY SINE Alu -18 293 1 1401 218 31 10 chr15 17671906 17672195 -68023559 - AluJb SINE Alu -17 295 1 2240 95 7 7 chr15 17672242 17672537 -68023217 - AluSg SINE Alu -15 295 1 2302 115 0 0 chr15 17673888 17674192 -68021562 + AluSq SINE Alu 1 304 -9 1652 174 0 60 chr15 17674202 17674339 -68021415 + AluJb SINE Alu 1 145 -167 2298 89 7 17 chr15 17674339 17674641 -68021113 + AluSq SINE Alu 1 299 -14 1652 174 0 60 chr15 17674641 17674819 -68020935 + AluJb SINE Alu 145 297 -15 2179 88 27 10 chr15 17674921 17675217 -68020537 + AluY SINE Alu 1 301 -10 297 194 112 20 chr15 17675229 17675327 -68020427 + L1MC4a LINE L1 7197 7303 -505 1949 148 3 26 chr15 17675344 17675654 -68020100 + AluSx SINE Alu 1 303 -9 260 270 0 0 chr15 17676044 17676118 -68019636 + L1MC4 LINE L1 7940 8013 -29 1992 151 3 0 chr15 17676198 17676503 -68019251 + AluSx SINE Alu 1 306 -6 34 42 0 0 chr15 17676636 17676684 -68019070 + AT_rich Low_complexity Low_complexity 1 48 0 1505 197 11 0 chr15 17676693 17676957 -68018797 - AluJb SINE Alu -45 267 1 1150 110 0 0 chr15 17677779 17677933 -68017821 - AluSg/x SINE Alu -11 301 148 2409 96 0 0 chr15 17678289 17678590 -68017164 + AluSx SINE Alu 1 301 -11 1919 151 20 23 chr15 17678989 17679333 -68016421 - MER2 DNA MER2_type -1 343 1 2108 106 3 53 chr15 17680005 17680327 -68015427 - AluSc SINE Alu -3 306 1 242 250 0 0 chr15 17680740 17680804 -68014950 + L1ME3 LINE L1 6099 6162 0 1977 150 16 3 chr15 17680829 17681136 -68014618 + AluSq SINE Alu 1 311 -2 2058 118 30 0 chr15 17681392 17681689 -68014065 + AluSp SINE Alu 1 306 -7 2550 197 30 31 chr15 17681830 17682216 -68013538 + L1MB7 LINE L1 5573 5959 -225 2081 104 7 7 chr15 17682216 17682513 -68013241 + AluSx SINE Alu 1 297 -15 2550 197 30 31 chr15 17682513 17682729 -68013025 + L1MB7 LINE L1 5959 6174 -10 2397 96 3 0 chr15 17682845 17683147 -68012607 - AluSx SINE Alu -9 303 1 2300 98 0 10 chr15 17683149 17683454 -68012300 - AluSq SINE Alu -1 312 11 2052 98 79 0 chr15 17683742 17684019 -68011735 - AluSc SINE Alu -10 299 1 1608 184 3 31 chr15 17684159 17684479 -68011275 - AluJo SINE Alu -1 311 1 2161 91 0 42 chr15 17684574 17684882 -68010872 + AluY SINE Alu 1 295 -16 2001 115 28 7 chr15 17685402 17685713 -68010041 - AluSx SINE Alu 0 312 1 2412 71 0 40 chr15 17685780 17686104 -68009650 - AluY SINE Alu 0 311 1 29 0 0 0 chr15 17686174 17686203 -68009551 + AT_rich Low_complexity Low_complexity 1 29 0 402 218 11 0 chr15 17686203 17686290 -68009464 - AluJb SINE Alu -205 107 20 1150 110 0 0 chr15 17687293 17687447 -68008307 - AluSg/x SINE Alu -11 299 146 27 0 0 0 chr15 17687929 17687956 -68007798 + AT_rich Low_complexity Low_complexity 1 27 0 32 26 0 0 chr15 17688047 17688086 -68007668 + AT_rich Low_complexity Low_complexity 1 39 0 1302 258 42 50 chr15 17688368 17688749 -68007005 + L1MB7 LINE L1 5582 5958 -226 2163 101 7 3 chr15 17688749 17689045 -68006709 + AluSx SINE Alu 1 297 -15 1302 258 42 50 chr15 17689045 17689261 -68006493 + L1MB7 LINE L1 5958 6174 -10 2361 96 3 0 chr15 17689378 17689679 -68006075 - AluSx SINE Alu -10 302 1 1027 113 0 0 chr15 17689682 17689815 -68005939 - AluSq/x SINE Alu -179 133 1 1633 94 17 0 chr15 17689825 17690058 -68005696 - L1PA10 LINE L1 -10 6158 5922 2428 80 3 0 chr15 17690107 17690407 -68005347 - AluSc SINE Alu -8 301 1 1696 212 6 80 chr15 17691010 17691230 -68004524 + L1MB7 LINE L1 5717 5952 -232 1540 176 81 3 chr15 17691230 17691514 -68004240 + AluJo SINE Alu 1 306 -6 1696 212 6 80 chr15 17691514 17691600 -68004154 + L1MB7 LINE L1 5952 6043 -141 2361 97 0 0 chr15 17691600 17691900 -68003854 + AluSg SINE Alu 1 300 -10 1696 212 6 80 chr15 17691900 17692037 -68003717 + L1MB7 LINE L1 6043 6125 -59 1660 161 69 0 chr15 17692037 17692328 -68003426 + AluJb SINE Alu 1 311 -1 1696 212 6 80 chr15 17692328 17692367 -68003387 + L1MB7 LINE L1 6125 6165 -19 531 312 92 25 chr15 17692565 17692920 -68002834 + L2 LINE L2 2668 3046 -267 263 257 157 36 chr15 17692924 17693064 -68002690 + L2 LINE L2 3156 3312 -1 1713 127 62 42 chr15 17693208 17693511 -68002243 + MER46B DNA MER2_type 1 188 -2543 2278 102 3 7 chr15 17693511 17693805 -68001949 + AluSq SINE Alu 1 293 -20 1713 127 62 42 chr15 17693805 17693855 -68001899 + MER46B DNA MER2_type 188 236 0 336 80 0 0 chr15 17695542 17695592 -68000162 - AluSq SINE Alu -1 300 251 1682 82 5 0 chr15 17695592 17695798 -67999956 - AluSq SINE Alu -106 207 1 1934 117 62 4 chr15 17695952 17696226 -67999528 - AluSq SINE Alu -23 290 1 1320 111 0 0 chr15 17696239 17696431 -67999323 + AluSq SINE Alu 117 308 0 1115 76 0 0 chr15 17696470 17696602 -67999152 - AluY SINE Alu -179 132 1 749 181 99 133 chr15 17696685 17696850 -67998904 + L1M4 LINE L1 5019 5188 -996 1453 191 8 8 chr15 17696850 17697112 -67998642 + AluJb SINE Alu 6 267 -45 749 181 99 133 chr15 17697112 17697416 -67998338 + L1M4 LINE L1 5188 5484 -700 1954 161 26 0 chr15 17697416 17697720 -67998034 + AluJo SINE Alu 1 312 0 285 185 46 69 chr15 17697781 17697889 -67997865 + L1MB8 LINE L1 6049 6155 -29 1661 178 14 3 chr15 17697952 17698244 -67997510 + AluJo SINE Alu 1 295 -17 2389 71 17 0 chr15 17698530 17698826 -67996928 - AluY SINE Alu -10 301 1 713 107 62 0 chr15 17699163 17699275 -67996479 - L1MB3 LINE L1 0 6183 6065 2127 131 3 3 chr15 17699278 17699583 -67996171 - AluSx SINE Alu -7 305 1 257 235 39 39 chr15 17699964 17700006 -67995748 + MER20B DNA MER1_type 437 478 -305 2468 57 3 7 chr15 17700006 17700304 -67995450 - AluY SINE Alu -14 297 1 257 235 39 39 chr15 17700304 17700363 -67995391 + MER20B DNA MER1_type 477 538 -245 506 167 0 0 chr15 17700367 17700445 -67995309 + AluSg1 SINE Alu 4 81 -228 560 118 0 0 chr15 17700565 17700641 -67995113 - FRAM SINE Alu -52 124 49 539 256 66 5 chr15 17700644 17700855 -67994899 + L1M4 LINE L1 2869 3092 -3054 1769 171 0 7 chr15 17700860 17701152 -67994602 + AluSx SINE Alu 1 290 -22 2127 107 10 3 chr15 17701299 17701598 -67994156 + AluSx SINE Alu 2 302 -10 659 186 11 90 chr15 17701598 17701735 -67994019 + L1MB7 LINE L1 6003 6124 -60 1702 158 65 0 chr15 17701735 17702027 -67993727 + AluJb SINE Alu 1 311 -1 659 186 11 90 chr15 17702027 17702066 -67993688 + L1MB7 LINE L1 6124 6165 -19 531 312 92 25 chr15 17702265 17702620 -67993134 + L2 LINE L2 2668 3046 -267 263 257 157 36 chr15 17702624 17702764 -67992990 + L2 LINE L2 3156 3312 -1 1743 128 62 40 chr15 17702908 17703210 -67992544 + MER46B DNA MER2_type 1 189 -2542 2337 98 0 7 chr15 17703210 17703505 -67992249 + AluSq SINE Alu 1 293 -20 1743 128 62 40 chr15 17703505 17703555 -67992199 + MER46B DNA MER2_type 189 236 0 336 80 0 0 chr15 17705236 17705286 -67990468 - AluSq SINE Alu -1 300 251 1728 82 0 0 chr15 17705286 17705493 -67990261 - AluSq SINE Alu -106 207 1 1934 117 62 4 chr15 17705647 17705921 -67989833 - AluSq SINE Alu -23 290 1 1320 111 0 0 chr15 17705934 17706126 -67989628 + AluSq SINE Alu 117 308 0 1115 76 0 0 chr15 17706165 17706297 -67989457 - AluY SINE Alu -179 132 1 710 188 99 133 chr15 17706381 17706546 -67989208 + L1M4 LINE L1 5019 5188 -996 1453 191 8 8 chr15 17706546 17706808 -67988946 + AluJb SINE Alu 6 267 -45 710 188 99 133 chr15 17706808 17707112 -67988642 + L1M4 LINE L1 5188 5484 -700 1783 185 26 0 chr15 17707112 17707415 -67988339 + AluJo SINE Alu 1 311 -1 180 0 0 0 chr15 17707416 17707436 -67988318 + (CA)n Simple_repeat Simple_repeat 1 20 0 285 185 46 69 chr15 17707475 17707583 -67988171 + L1MB8 LINE L1 6049 6155 -29 1721 177 10 3 chr15 17707646 17707940 -67987814 + AluJo SINE Alu 1 296 -16 2023 105 20 7 chr15 17708226 17708522 -67987232 - AluY SINE Alu -10 301 2 700 197 86 105 chr15 17708524 17708585 -67987169 + MER20B DNA MER1_type 480 541 -242 2125 128 0 3 chr15 17708585 17708875 -67986879 + AluSg SINE Alu 2 290 -20 700 197 86 105 chr15 17708875 17709061 -67986693 + MER20B DNA MER1_type 541 722 -61 2092 104 10 14 chr15 17709061 17709358 -67986396 + AluSx SINE Alu 2 297 -15 700 197 86 105 chr15 17709358 17709413 -67986341 + MER20B DNA MER1_type 722 777 -6 23 0 0 0 chr15 17709623 17709646 -67986108 + AT_rich Low_complexity Low_complexity 1 23 0 236 169 0 34 chr15 17709759 17709818 -67985936 + CT-rich Low_complexity Low_complexity 1 57 0 2138 127 0 3 chr15 17710234 17710525 -67985229 + AluSg SINE Alu 1 290 -20 797 185 99 66 chr15 17710530 17710710 -67985044 + MER20B DNA MER1_type 530 722 -61 2115 98 10 14 chr15 17710710 17711007 -67984747 + AluSx SINE Alu 1 296 -16 797 185 99 66 chr15 17711007 17711069 -67984685 + MER20B DNA MER1_type 722 780 -3 2221 112 0 3 chr15 17711712 17712015 -67983739 - AluSx SINE Alu -10 302 1 2121 94 50 17 chr15 17712259 17712556 -67983198 + AluSp SINE Alu 2 308 -5 2183 124 3 10 chr15 17712858 17713164 -67982590 - AluSx SINE Alu -8 304 1 458 257 140 23 chr15 17713714 17713885 -67981869 - MIR SINE MIR -44 218 28 1743 134 44 31 chr15 17713979 17714300 -67981454 - L1MC3 LINE L1 -745 7040 6716 878 129 8 8 chr15 17714300 17714432 -67981322 + FLAM_C SINE Alu 1 132 -11 1721 183 33 0 chr15 17714436 17714736 -67981018 + AluJo SINE Alu 1 310 -2 816 129 48 48 chr15 17714822 17714969 -67980785 + AluJb SINE Alu 152 298 -14 2453 178 102 37 chr15 17714969 17715537 -67980217 - L1MC3 LINE L1 -1059 6726 6122 1646 136 4 55 chr15 17715559 17715832 -67979922 + AluSx SINE Alu 30 288 -24 2061 138 0 0 chr15 17715842 17716144 -67979610 + AluSx SINE Alu 1 302 0 2230 92 0 19 chr15 17716144 17716459 -67979295 + AluSg SINE Alu 1 309 -1 539 168 11 0 chr15 17716496 17716591 -67979163 - LTR54B LTR ERV1 -399 99 4 929 227 13 24 chr15 17716591 17716877 -67978877 - MER57-int LTR ERV1 -655 6882 6646 292 325 32 43 chr15 17717092 17717280 -67978474 + AluSp SINE Alu 104 289 -14 1397 177 25 11 chr15 17717293 17717590 -67978164 + AluSq SINE Alu 3 303 0 2112 119 3 3 chr15 17717590 17717884 -67977870 + AluSg SINE Alu 1 294 -16 537 88 113 0 chr15 17717885 17717965 -67977789 - L1MC3 LINE L1 -1655 6130 6042 2533 61 0 10 chr15 17718078 17718390 -67977364 + AluY SINE Alu 1 309 -2 285 265 78 10 chr15 17718474 17718576 -67977178 - MIR SINE MIR 0 262 154 2079 109 21 0 chr15 17718942 17719225 -67976529 + AluSx SINE Alu 1 289 -23 1245 126 5 45 chr15 17719277 17719476 -67976278 + AluSx SINE Alu 1 191 -121 680 227 12 6 chr15 17719476 17719639 -67976115 + AluSx SINE Alu 56 219 -93 359 239 18 30 chr15 17719843 17720010 -67975744 + (TTA)n Simple_repeat Simple_repeat 1 165 0 1287 146 24 0 chr15 17720164 17720376 -67975378 + AluSq SINE Alu 85 301 -12 2148 114 0 10 chr15 17720413 17720710 -67975044 - AluSc SINE Alu -15 294 1 1796 154 33 0 chr15 17720712 17720985 -67974769 - AluJb SINE Alu -20 292 11 2228 110 3 0 chr15 17721428 17721720 -67974034 + AluSx SINE Alu 1 293 -19 2334 90 7 0 chr15 17721794 17722082 -67973672 + AluSq SINE Alu 8 297 -16 1446 188 19 8 chr15 17722200 17722466 -67973288 - AluJb SINE Alu -43 269 1 216 247 260 0 chr15 17722520 17722593 -67973161 + MIR SINE MIR 56 147 -115 2427 88 0 3 chr15 17722771 17723078 -67972676 + AluSc SINE Alu 1 306 -3 1816 161 13 7 chr15 17723180 17723479 -67972275 - AluJb SINE Alu -11 301 1 2268 69 7 14 chr15 17723524 17723832 -67971922 - AluSq SINE Alu 0 306 1 720 149 149 0 chr15 17723879 17724020 -67971734 - FRAM SINE Alu -14 162 1 2488 73 0 0 chr15 17724251 17724551 -67971203 + AluSg SINE Alu 1 300 -10 1295 199 107 44 chr15 17724655 17724691 -67971063 + L1MB7 LINE L1 5790 5822 -362 2332 94 0 0 chr15 17724691 17724990 -67970764 + AluSx SINE Alu 1 299 -13 1295 199 107 44 chr15 17724990 17725319 -67970435 + L1MB7 LINE L1 5822 6178 -6 23 86 0 0 chr15 17726265 17726323 -67969431 + GC_rich Low_complexity Low_complexity 1 58 0 215 160 20 0 chr15 17726425 17726475 -67969279 + (CGG)n Simple_repeat Simple_repeat 2 52 0 284 127 0 127 chr15 17727349 17727420 -67968334 - FLAM SINE Alu -22 111 50 322 188 0 94 chr15 17727420 17727505 -67968249 + FLAM SINE Alu 54 130 -3 200 311 98 41 chr15 17727608 17727730 -67968024 + L2 LINE L2 1801 1929 -1385 2201 82 6 25 chr15 17727753 17728068 -67967686 + AluSq SINE Alu 5 313 0 1846 104 10 55 chr15 17728086 17728393 -67967361 + AluSx SINE Alu 1 293 -19 2060 89 14 10 chr15 17728420 17728712 -67967042 + AluSg SINE Alu 1 293 -17 363 203 81 0 chr15 17728738 17728812 -67966942 - MER2 DNA MER2_type -1 344 265 567 242 8 8 chr15 17728812 17728944 -67966810 + FLAM_C SINE Alu 2 133 -10 736 101 42 0 chr15 17728965 17729084 -67966670 - MER2 DNA MER2_type -139 206 83 2155 51 0 11 chr15 17729088 17729363 -67966391 + AluY SINE Alu 18 289 -22 2714 240 46 32 chr15 17729531 17730365 -67965389 + L1MC4a LINE L1 6857 7701 -107 2316 96 3 0 chr15 17730366 17730678 -67965076 + AluSp SINE Alu 1 313 0 2147 121 0 3 chr15 17730690 17731003 -67964751 + AluSx SINE Alu 1 312 0 2085 113 0 13 chr15 17731096 17731398 -67964356 + AluSx SINE Alu 1 298 -14 2028 109 17 0 chr15 17731877 17732171 -67963583 + AluSp SINE Alu 1 299 -14 1432 215 7 0 chr15 17732179 17732486 -67963268 + AluJo SINE Alu 1 309 -3 1996 134 7 0 chr15 17732490 17732788 -67962966 + AluSx SINE Alu 4 303 -9 647 201 59 0 chr15 17732823 17732992 -67962762 - L1M4 LINE L1 -797 5349 5171 955 163 0 18 chr15 17733005 17733171 -67962583 - AluSp SINE Alu -14 299 137 921 203 49 104 chr15 17733179 17733258 -67962496 - L1M4 LINE L1 -987 5159 5077 1318 172 0 105 chr15 17733258 17733583 -67962171 + AluJb SINE Alu 3 293 -19 921 203 49 104 chr15 17733583 17733829 -67961925 - L1M4 LINE L1 -1069 5077 4852 2315 74 3 0 chr15 17733836 17734135 -67961619 + AluY SINE Alu 1 300 -11 796 283 0 12 chr15 17734180 17734420 -67961334 - L1M4b LINE L1 -4992 1863 1627 1709 163 44 0 chr15 17734420 17734714 -67961040 - AluJb SINE Alu -5 307 1 2585 258 107 61 chr15 17734721 17735717 -67960037 - L1M4 LINE L1 -5619 1240 199 963 140 34 34 chr15 17735717 17735895 -67959859 - Tigger2a DNA MER2_type -256 178 1 454 218 40 0 chr15 17735895 17735996 -67959758 + L1M4 LINE L1 4311 4415 -1731 1187 127 10 63 chr15 17735996 17736047 -67959707 + MSTB LTR MaLR 6 58 -368 2146 98 3 35 chr15 17736047 17736365 -67959389 + AluSg SINE Alu 1 308 -2 1187 127 10 63 chr15 17736365 17736518 -67959236 + MSTB LTR MaLR 58 199 -227 2074 99 3 3 chr15 17736519 17736811 -67958943 + AluSc SINE Alu 1 292 -17 2210 93 3 0 chr15 17736812 17737114 -67958640 + AluSp SINE Alu 1 303 -10 2003 177 61 75 chr15 17737117 17737157 -67958597 + L1MC4 LINE L1 25 64 -8372 1791 137 23 13 chr15 17737157 17737457 -67958297 - AluSx SINE Alu -9 303 1 2003 177 61 75 chr15 17737457 17738088 -67957666 + L1MC4 LINE L1 64 703 -7733 2241 91 0 0 chr15 17738088 17738386 -67957368 - AluSp SINE Alu -13 300 3 2003 177 61 75 chr15 17738386 17738447 -67957307 + L1MC4 LINE L1 703 8055 -381 1106 72 0 0 chr15 17738451 17738590 -67957164 + AluSq/x SINE Alu 1 139 -173 1165 223 51 64 chr15 17738612 17739054 -67956700 + L1MDa LINE L1 278 724 -5816 2148 96 0 3 chr15 17739054 17739347 -67956407 + AluSg SINE Alu 5 296 -14 1165 223 51 64 chr15 17739347 17739726 -67956028 + L1MDa LINE L1 724 1991 -4549 1975 125 7 0 chr15 17739728 17740025 -67955729 + AluSx SINE Alu 1 299 -13 1103 208 66 52 chr15 17740025 17740283 -67955471 - L1M4b LINE L1 -5249 1610 1344 1758 174 7 0 chr15 17740283 17740582 -67955172 + AluJb SINE Alu 1 301 -11 1103 208 66 52 chr15 17740582 17740689 -67955065 - L1M4b LINE L1 -5515 1344 1240 700 191 26 7 chr15 17740701 17740853 -67954901 - AluSg/x SINE Alu -12 300 146 922 197 25 10 chr15 17740954 17741157 -67954597 - AluJo SINE Alu -106 206 1 238 294 245 7 chr15 17741211 17741354 -67954400 + MIR SINE MIR 56 232 -30 2208 104 0 3 chr15 17741462 17741770 -67953984 + AluSc SINE Alu 1 307 -2 518 311 23 27 chr15 17741902 17742162 -67953592 - AluSx SINE Alu -43 269 11 1151 137 0 0 chr15 17743035 17743218 -67952536 + AluSq SINE Alu 121 303 -10 1848 108 7 59 chr15 17743257 17743564 -67952190 + AluSx SINE Alu 3 293 -19 2060 89 14 10 chr15 17743591 17743883 -67951871 + AluSg SINE Alu 1 293 -17 342 216 81 0 chr15 17743909 17743983 -67951771 - MER2 DNA MER2_type -1 344 265 567 242 8 8 chr15 17743983 17744115 -67951639 + FLAM_C SINE Alu 2 133 -10 736 101 42 0 chr15 17744136 17744255 -67951499 - MER2 DNA MER2_type -139 206 83 2235 50 4 7 chr15 17744259 17744539 -67951215 + AluY SINE Alu 18 296 -15 1322 198 7 17 chr15 17744967 17745265 -67950489 + AluSx SINE Alu 3 297 -15 331 269 108 82 chr15 17745704 17745972 -67949782 - L1M2 LINE L1 -4768 2081 1807 436 295 7 13 chr15 17746011 17746160 -67949594 - AluSq/x SINE Alu -154 148 1 1481 136 30 8 chr15 17746162 17746422 -67949332 - AluSp SINE Alu 0 313 52 1465 147 9 0 chr15 17746424 17746656 -67949098 + AluSg/x SINE Alu 69 302 -10 25 0 0 0 chr15 17746656 17746681 -67949073 + AT_rich Low_complexity Low_complexity 1 25 0 1812 158 7 0 chr15 17746733 17747056 -67948698 + AluSx SINE Alu 1 312 0 3031 149 31 38 chr15 17747057 17747287 -67948467 + MER41B LTR ERV1 1 231 -404 2384 81 0 0 chr15 17747287 17747596 -67948158 + AluSx SINE Alu 1 309 -3 3031 149 31 38 chr15 17747596 17747917 -67947837 + MER41B LTR ERV1 231 548 -87 326 95 0 48 chr15 17747929 17747992 -67947762 - L1MA3 LINE L1 0 6305 6246 2090 116 0 0 chr15 17748023 17748315 -67947439 + AluSq SINE Alu 5 296 -17 426 91 91 0 chr15 17748401 17748478 -67947276 - L1PB1 LINE L1 -4 6147 6064 296 188 29 14 chr15 17748705 17748774 -67946980 - L1PB1 LINE L1 -83 6068 5999 1810 138 62 0 chr15 17748777 17749066 -67946688 - AluSx SINE Alu -5 307 1 550 187 9 0 chr15 17749069 17749176 -67946578 + MER41B LTR ERV1 520 627 -8 451 277 0 0 chr15 17749188 17749318 -67946436 + L1M4 LINE L1 4672 4801 -1345 494 130 0 93 chr15 17749319 17749363 -67946391 + LTR8A LTR ERV1 1 47 -680 1687 166 16 3 chr15 17749363 17749671 -67946083 + AluSx SINE Alu 1 312 0 494 130 0 93 chr15 17749671 17749734 -67946020 + LTR8A LTR ERV1 47 98 -629 * 793 112 8 8 chr15 17749726 17749851 -67945903 + LTR9B LTR ERV1 437 561 -83 1734 102 0 0 chr15 17749902 17750148 -67945606 + AluSg SINE Alu 53 298 -12 1976 154 72 62 chr15 17750149 17750503 -67945251 + LTR8A LTR ERV1 214 508 -183 1731 136 25 7 chr15 17750503 17750789 -67944965 + AluSx SINE Alu 1 291 -21 1976 154 72 62 chr15 17750789 17750928 -67944826 + LTR8A LTR ERV1 508 644 -47 457 231 37 0 chr15 17751165 17751273 -67944481 + LTR8 LTR ERV1 533 644 -47 308 85 489 0 chr15 17751302 17751396 -67944358 - L1MB7 LINE L1 -12 6172 6033 210 71 0 0 chr15 17751428 17751456 -67944298 + (A)n Simple_repeat Simple_repeat 1 28 0 504 160 0 0 chr15 17751463 17751538 -67944216 + AluS SINE Alu 2 76 -236 2527 93 55 22 chr15 17751538 17751645 -67944109 - MER51B LTR ERV1 0 377 275 1473 199 13 0 chr15 17751645 17751951 -67943803 + AluSx SINE Alu 1 310 -2 2527 93 55 22 chr15 17751951 17752208 -67943546 - MER51B LTR ERV1 -102 275 1 883 141 6 113 chr15 17752210 17752387 -67943367 - MER51-int LTR ERV1 -1 7815 7658 669 254 27 27 chr15 17752387 17752611 -67943143 - AluSg/x SINE Alu -17 293 70 251 248 20 40 chr15 17753053 17753154 -67942600 - LTR54B LTR ERV1 -396 102 4 2850 116 55 38 chr15 17753154 17753485 -67942269 - MER57-int LTR ERV1 -655 6882 6539 2031 125 0 7 chr15 17753485 17753788 -67941966 - AluSg SINE Alu -9 301 1 2850 116 55 38 chr15 17753788 17753930 -67941824 - MER57-int LTR ERV1 -998 6539 6401 1093 154 13 53 chr15 17753933 17754160 -67941594 + AluSp SINE Alu 1 218 -95 297 155 0 0 chr15 17754203 17754261 -67941493 + (CA)n Simple_repeat Simple_repeat 2 59 0 962 169 0 6 chr15 17754261 17754444 -67941310 + AluY SINE Alu 128 309 -2 465 145 0 0 chr15 17755033 17755102 -67940652 + AluSp SINE Alu 228 296 -17 3024 125 16 41 chr15 17755102 17755196 -67940558 - MER57-int LTR ERV1 -1128 6409 6314 2083 72 0 0 chr15 17755196 17755461 -67940293 - AluSg SINE Alu -7 303 39 3024 125 16 41 chr15 17755461 17755991 -67939763 - MER57-int LTR ERV1 -1223 6314 5753 1612 134 3 82 chr15 17755999 17756328 -67939426 + AluSx SINE Alu 1 303 -9 275 107 191 95 chr15 17756328 17756412 -67939342 - MER57-int LTR ERV1 -2197 5340 5249 * 2092 94 5 4 chr15 17756411 17756801 -67938953 - MER57-int LTR ERV1 -2572 2645 2211 250 151 23 128 chr15 17756780 17756866 -67938888 - MER57-int LTR ERV1 -3239 1978 1902 * 1975 144 0 0 chr15 17756867 17757166 -67938588 - AluSx SINE Alu -13 299 1 207 0 0 0 chr15 17757239 17757262 -67938492 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 508 265 77 18 chr15 17757271 17757441 -67938313 - L2 LINE L2 -43 3229 3050 1503 94 0 0 chr15 17757590 17757793 -67937961 - AluSc SINE Alu -102 207 5 33 43 0 0 chr15 17758274 17758321 -67937433 + AT_rich Low_complexity Low_complexity 1 47 0 846 114 0 0 chr15 17758321 17758435 -67937319 - AluSg/x SINE Alu -26 286 173 1505 181 14 10 chr15 17758445 17758733 -67937021 - AluJo SINE Alu -23 289 1 1676 160 0 4 chr15 17758819 17759100 -67936654 - AluSx SINE Alu -2 310 31 395 335 54 54 chr15 17759642 17759955 -67935799 + L2 LINE L2 2384 2696 -618 482 162 0 0 chr15 17759971 17760045 -67935709 + AluSp/q SINE Alu 218 291 -22 180 0 0 0 chr15 17760052 17760072 -67935682 + (TA)n Simple_repeat Simple_repeat 1 20 0 245 298 36 12 chr15 17760177 17760261 -67935493 + LTR67 LTR ERVL 428 513 -44 1362 138 152 9 chr15 17760263 17760551 -67935203 + MSTA LTR MaLR 1 335 -91 2061 133 0 0 chr15 17760727 17761029 -67934725 - AluSx SINE Alu -10 302 1 228 65 32 0 chr15 17761029 17761060 -67934694 + MSTA LTR MaLR 324 355 -9 371 280 126 7 chr15 17761354 17761497 -67934257 + L2 LINE L2 3110 3269 -3 1882 132 14 0 chr15 17761517 17761805 -67933949 + AluSx SINE Alu 4 295 -17 345 237 79 72 chr15 17761917 17762186 -67933568 - AluY SINE Alu -61 240 1 323 336 51 14 chr15 17762870 17763084 -67932670 - AluY SINE Alu -79 222 1 1440 171 110 13 chr15 17763086 17763396 -67932358 - L1PA16 LINE L1 -7 6159 5820 2417 67 0 3 chr15 17763527 17763840 -67931914 - AluSx SINE Alu 0 312 1 741 196 20 0 chr15 17764032 17764180 -67931574 - L1ME1 LINE L1 -5 6161 6011 1302 94 19 61 chr15 17764180 17764305 -67931449 - MER41B LTR ERV1 0 635 521 2467 53 0 0 chr15 17764305 17764609 -67931145 + AluY SINE Alu 1 304 -7 1302 94 19 61 chr15 17764609 17764695 -67931059 - MER41B LTR ERV1 -114 521 433 1044 209 21 101 chr15 17764695 17764754 -67931000 - L1M4 LINE L1 -2360 3786 3724 1818 139 14 10 chr15 17764754 17765049 -67930705 + AluJb SINE Alu 1 296 -16 1044 209 21 101 chr15 17765049 17765221 -67930533 - L1M4 LINE L1 -2422 3724 3594 1676 158 7 7 chr15 17765221 17765513 -67930241 - AluJb SINE Alu -20 292 1 1044 209 21 101 chr15 17765513 17765657 -67930097 - L1M4 LINE L1 -2552 3594 3440 954 215 39 8 chr15 17765663 17765919 -67929835 - L1MA4 LINE L1 -6 6294 6031 191 35 0 35 chr15 17765919 17765948 -67929806 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1023 153 6 0 chr15 17765948 17766111 -67929643 - AluSq SINE Alu -30 283 120 1075 154 0 0 chr15 17766111 17766286 -67929468 - AluSg/x SINE Alu -1 311 137 374 149 0 15 chr15 17766296 17766363 -67929391 - AluSq SINE Alu -100 203 138 1639 169 0 0 chr15 17766367 17766640 -67929114 - AluSx SINE Alu -16 296 24 42 48 0 0 chr15 17766982 17767045 -67928709 + AT_rich Low_complexity Low_complexity 1 63 0 1713 123 19 4 chr15 17767732 17767993 -67927761 + AluSx SINE Alu 3 267 -45 47 0 0 0 chr15 17767993 17768040 -67927714 + AT_rich Low_complexity Low_complexity 1 47 0 2411 64 0 0 chr15 17768040 17768338 -67927416 - AluY SINE Alu -13 298 1 1440 171 110 13 chr15 17768340 17768650 -67927104 - L1PA16 LINE L1 -7 6159 5820 2428 67 0 3 chr15 17768785 17769098 -67926656 - AluSx SINE Alu 0 312 1 741 196 20 0 chr15 17769290 17769438 -67926316 - L1ME1 LINE L1 -5 6161 6011 1302 94 19 61 chr15 17769438 17769563 -67926191 - MER41B LTR ERV1 0 635 521 2458 53 0 0 chr15 17769563 17769866 -67925888 + AluY SINE Alu 1 303 -8 1302 94 19 61 chr15 17769866 17769952 -67925802 - MER41B LTR ERV1 -114 521 433 1110 216 22 74 chr15 17769952 17770011 -67925743 - L1M4 LINE L1 -2360 3786 3725 1783 138 14 14 chr15 17770011 17770307 -67925447 + AluJb SINE Alu 1 296 -16 1110 216 22 74 chr15 17770307 17770468 -67925286 - L1M4 LINE L1 -2421 3725 3590 1676 158 7 7 chr15 17770468 17770760 -67924994 - AluJb SINE Alu -20 292 1 1110 216 22 74 chr15 17770760 17770904 -67924850 - L1M4 LINE L1 -2556 3590 3440 954 215 39 8 chr15 17770910 17771166 -67924588 - L1MA4 LINE L1 -6 6294 6031 191 35 0 35 chr15 17771166 17771195 -67924559 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1023 153 6 0 chr15 17771195 17771358 -67924396 - AluSq SINE Alu -30 283 120 1609 127 0 0 chr15 17771358 17771602 -67924152 - AluSg/x SINE Alu 0 312 69 2162 95 24 0 chr15 17771610 17771904 -67923850 - AluSx SINE Alu -11 301 1 2162 116 0 3 chr15 17771947 17772249 -67923505 - AluSx SINE Alu -11 301 1 344 320 26 0 chr15 17772257 17772410 -67923344 - L1M4 LINE L1 -2701 3445 3289 1972 125 0 10 chr15 17772429 17772734 -67923020 - AluSx SINE Alu -10 302 1 1116 172 14 0 chr15 17772817 17773026 -67922728 + AluSp SINE Alu 1 212 -101 214 191 48 0 chr15 17773076 17773118 -67922636 + (TTAAA)n Simple_repeat Simple_repeat 1 44 0 1998 116 0 0 chr15 17774004 17774288 -67921466 - AluSc SINE Alu -20 289 6 2043 148 0 0 chr15 17774357 17774668 -67921086 + AluSx SINE Alu 1 311 -1 248 171 171 49 chr15 17774861 17774943 -67920811 + L1ME LINE L1 5729 5820 -301 689 235 99 0 chr15 17775129 17775291 -67920463 - FRAM SINE Alu -4 172 1 1881 159 7 0 chr15 17775336 17775644 -67920110 + AluSx SINE Alu 1 310 -2 476 103 0 56 chr15 17775644 17775751 -67920003 + (GGAA)n Simple_repeat Simple_repeat 1 101 0 1824 145 0 24 chr15 17775764 17776061 -67919693 + AluSx SINE Alu 1 290 -22 379 278 154 96 chr15 17776073 17776115 -67919639 + L1ME4a LINE L1 5768 5806 -315 24 32 0 0 chr15 17776115 17776146 -67919608 + AT_rich Low_complexity Low_complexity 1 31 0 379 278 154 96 chr15 17776146 17776397 -67919357 + L1ME4a LINE L1 5806 6110 -11 1208 104 0 0 chr15 17777212 17777385 -67918369 - AluSg/x SINE Alu -6 304 132 2064 128 0 0 chr15 17777385 17777681 -67918073 - AluSq SINE Alu -17 296 1 1930 134 7 0 chr15 17777681 17777972 -67917782 - AluSx SINE Alu -18 294 2 2285 82 0 0 chr15 17777982 17778274 -67917480 - AluSg SINE Alu -18 292 1 286 61 0 8 chr15 17778374 17778414 -67917340 + AluS SINE Alu 56 89 -213 2167 89 7 13 chr15 17779137 17779440 -67916314 + AluSg SINE Alu 1 301 -9 366 161 0 0 chr15 17779537 17779593 -67916161 + MER66A LTR ERV1 283 338 -140 24 32 0 0 chr15 17779593 17779624 -67916130 + AT_rich Low_complexity Low_complexity 1 31 0 2149 80 3 10 chr15 17780790 17781089 -67914665 - AluY SINE Alu -14 297 1 895 169 7 0 chr15 17781471 17781653 -67914101 - AluJo SINE Alu 0 309 127 1823 145 0 24 chr15 17781657 17781953 -67913801 - AluJb SINE Alu -22 290 2 1247 149 4 55 chr15 17782267 17782334 -67913420 - MER2 DNA MER2_type -7 338 269 2076 123 3 0 chr15 17782334 17782634 -67913120 + AluSx SINE Alu 12 312 0 1247 149 4 55 chr15 17782634 17782801 -67912953 - MER2 DNA MER2_type -76 269 116 263 177 0 0 chr15 17782831 17782893 -67912861 + MER2 DNA MER2_type 98 159 -186 2162 98 0 38 chr15 17782916 17783025 -67912729 - AluSq SINE Alu -9 304 192 2247 82 26 0 chr15 17783025 17783329 -67912425 - AluSp SINE Alu -1 312 1 2162 98 0 38 chr15 17783329 17783535 -67912219 - AluSq SINE Alu -121 192 1 550 167 11 11 chr15 17783564 17783654 -67912100 - MER2 DNA MER2_type -255 90 1 2140 102 3 3 chr15 17783878 17784181 -67911573 + AluSp SINE Alu 1 303 -10 943 178 99 16 chr15 17784241 17784432 -67911322 - MER58C DNA MER1_type -8 207 1 293 226 12 0 chr15 17784443 17784527 -67911227 + C-rich Low_complexity Low_complexity 4 88 0 1543 137 4 4 chr15 17784530 17784779 -67910975 - AluSq SINE Alu -6 307 59 945 166 6 0 chr15 17785172 17785315 -67910439 + FRAM SINE Alu 1 23 -153 2156 106 3 0 chr15 17785315 17785616 -67910138 - AluSc SINE Alu -6 303 2 945 166 6 0 chr15 17785616 17785635 -67910119 + FRAM SINE Alu 23 40 0 342 109 0 0 chr15 17785858 17785904 -67909850 + Alu SINE Alu 1 46 -256 1700 106 4 4 chr15 17785904 17786141 -67909613 - AluSx SINE Alu -75 237 1 1925 130 7 3 chr15 17786152 17786453 -67909301 - AluSg SINE Alu -8 302 1 1784 149 0 10 chr15 17786700 17787002 -67908752 + AluJo SINE Alu 2 300 -12 421 287 155 0 chr15 17787021 17787195 -67908559 + MIR SINE MIR 46 246 -16 587 103 0 0 chr15 17787267 17787345 -67908409 + AluJ/FLAM SINE Alu 2 79 -233 231 324 94 56 chr15 17787345 17787558 -67908196 - L2 LINE L2 -1317 1997 1777 1952 92 43 3 chr15 17787716 17787998 -67907756 + AluSc SINE Alu 1 293 -16 1044 178 126 25 chr15 17788741 17789027 -67906727 - MER46C DNA MER2_type -4 334 20 1970 135 0 7 chr15 17789767 17790070 -67905684 - AluSx SINE Alu -11 301 1 827 76 0 34 chr15 17790071 17790190 -67905564 - AluSq/x SINE Alu -177 135 21 2012 116 0 19 chr15 17790439 17790749 -67905005 + AluSc SINE Alu 1 304 -5 2183 97 3 0 chr15 17791625 17791923 -67903831 - AluSp SINE Alu -14 299 1 2360 76 0 0 chr15 17792564 17792868 -67902886 - AluY SINE Alu -7 304 1 1439 226 113 31 chr15 17792907 17793228 -67902526 - L2 LINE L2 -4 3309 3016 2309 72 0 0 chr15 17793228 17793521 -67902233 + AluY SINE Alu 1 293 -18 1439 226 113 31 chr15 17793521 17793745 -67902009 - L2 LINE L2 -297 3016 2714 2005 114 3 10 chr15 17793745 17794044 -67901710 - AluSx SINE Alu -15 297 1 1439 226 113 31 chr15 17794044 17794066 -67901688 - L2 LINE L2 -599 2714 2695 881 65 40 0 chr15 17794085 17794233 -67901521 - AluY SINE Alu 0 306 154 1961 123 3 13 chr15 17794730 17795038 -67900716 - AluSx SINE Alu -7 305 1 1582 46 25 0 chr15 17795079 17795300 -67900454 - AluY SINE Alu 0 306 81 807 211 40 15 chr15 17795351 17795550 -67900204 - L1MB8 LINE L1 -6 6172 5969 1039 136 113 0 chr15 17795552 17795764 -67899990 + AluSq SINE Alu 86 317 0 2214 106 3 0 chr15 17795767 17796069 -67899685 + AluSg SINE Alu 1 303 -7 3283 132 21 67 chr15 17796073 17796218 -67899536 - L1MB8 LINE L1 -254 5924 5774 1856 151 0 7 chr15 17796218 17796509 -67899245 - AluJo SINE Alu -23 289 1 3283 132 21 67 chr15 17796509 17796798 -67898956 - L1MB8 LINE L1 -404 5774 5525 2256 63 0 20 chr15 17796798 17797098 -67898656 - AluY SINE Alu -17 294 1 3283 132 21 67 chr15 17797098 17797291 -67898463 - L1MB8 LINE L1 -653 5525 5325 1609 175 0 14 chr15 17797291 17797588 -67898166 - AluJo SINE Alu -19 293 1 789 167 0 0 chr15 17797589 17797721 -67898033 - AluJo SINE Alu -176 136 5 334 178 14 41 chr15 17797721 17797794 -67897960 - L1MB8 LINE L1 -848 5336 5266 1364 147 12 126 chr15 17797855 17798212 -67897542 + AluJb SINE Alu 1 302 0 1343 152 56 24 chr15 17798606 17798856 -67896898 - AluJb SINE Alu -54 258 1 1766 124 16 46 chr15 17799051 17799357 -67896397 + AluSq SINE Alu 1 297 -16 1203 200 52 30 chr15 17799821 17800126 -67895628 - AluJo SINE Alu 0 312 1 1981 107 11 0 chr15 17800488 17800797 -67894957 - AluSx SINE Alu 0 312 1 739 157 0 50 chr15 17800879 17801019 -67894735 - FLAM_C SINE Alu 0 133 1 1926 131 0 0 chr15 17801229 17801512 -67894242 - AluSx SINE Alu -2 310 28 2066 107 13 13 chr15 17801699 17802008 -67893746 - AluSp SINE Alu -4 309 1 2093 92 3 0 chr15 17802019 17802301 -67893453 - AluSg SINE Alu -22 288 6 1066 152 0 0 chr15 17803079 17803250 -67892504 + AluSg/x SINE Alu 136 306 -6 368 256 23 52 chr15 17803319 17803368 -67892386 - HAL1 LINE L1 -116 2391 2342 2013 119 7 19 chr15 17803368 17803678 -67892076 - AluSx SINE Alu -6 306 1 368 256 23 52 chr15 17803678 17803800 -67891954 - HAL1 LINE L1 -165 2342 2225 845 120 8 0 chr15 17803861 17803986 -67891768 + AluSg/x SINE Alu 176 301 -11 355 235 104 0 chr15 17803992 17804107 -67891647 - HAL1 LINE L1 -351 2156 2030 246 207 0 0 chr15 17804108 17804166 -67891588 + CT-rich Low_complexity Low_complexity 3 60 0 260 62 0 0 chr15 17804168 17804200 -67891554 - AluJb SINE Alu -14 288 257 962 173 6 6 chr15 17804202 17804370 -67891384 - AluJb SINE Alu -144 168 1 315 214 43 0 chr15 17804558 17804628 -67891126 - HAL1 LINE L1 -590 1917 1845 2614 137 33 5 chr15 17804640 17805064 -67890690 - MER39B LTR ERV1 0 653 218 278 154 0 31 chr15 17805065 17805130 -67890624 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 854 144 25 56 chr15 17805133 17805293 -67890461 - AluJo/FRAM SINE Alu -24 288 134 2120 118 0 0 chr15 17805293 17805597 -67890157 - AluSx SINE Alu -8 304 1 2170 96 3 10 chr15 17805599 17805902 -67889852 - AluSx SINE Alu -11 301 1 2141 123 0 0 chr15 17805921 17806231 -67889523 - AluSx SINE Alu -2 310 1 1294 133 19 19 chr15 17806231 17806441 -67889313 - MER39B LTR ERV1 -443 210 1 272 275 120 54 chr15 17806443 17806714 -67889040 - HAL1 LINE L1 -1913 594 272 23 0 0 0 chr15 17806781 17806804 -67888950 + AT_rich Low_complexity Low_complexity 1 23 0 1099 151 0 0 chr15 17806930 17807102 -67888652 - AluSg/x SINE Alu -14 298 127 1367 174 40 22 chr15 17807102 17807377 -67888377 + AluJo SINE Alu 6 285 -27 231 33 0 0 chr15 17807377 17807388 -67888366 + (TA)n Simple_repeat Simple_repeat 1 11 -19 2047 123 0 7 chr15 17807388 17807697 -67888057 + AluSx SINE Alu 2 308 -4 231 33 0 0 chr15 17807697 17807715 -67888039 + (TA)n Simple_repeat Simple_repeat 10 30 0 752 162 7 22 chr15 17807857 17807993 -67887761 - AluJo SINE Alu -177 135 2 2186 109 0 0 chr15 17808076 17808378 -67887376 + AluSg SINE Alu 1 302 -8 2006 155 27 57 chr15 17808632 17808690 -67887064 - MER21B LTR ERV1 -1 862 804 2190 102 3 0 chr15 17808690 17808984 -67886770 + AluSx SINE Alu 1 295 -17 2006 155 27 57 chr15 17808984 17809326 -67886428 - MER21B LTR ERV1 -59 804 474 1890 138 0 10 chr15 17809334 17809623 -67886131 - AluSx SINE Alu -26 286 1 785 162 0 52 chr15 17809656 17809810 -67885944 + AluJb SINE Alu 3 148 -164 1657 160 0 20 chr15 17809951 17810244 -67885510 + AluSx SINE Alu 3 289 -23 517 59 39 65 chr15 17810244 17810603 -67885151 + (TA)n Simple_repeat Simple_repeat 1 349 0 212 100 80 0 chr15 17810627 17810677 -67885077 + (TA)n Simple_repeat Simple_repeat 2 55 0 608 184 191 7 chr15 17810680 17810816 -67884938 - MER21B LTR ERV1 -400 463 303 709 199 0 15 chr15 17810858 17810989 -67884765 + FLAM_C SINE Alu 1 129 -4 1923 116 42 0 chr15 17810994 17811278 -67884476 + AluSx SINE Alu 1 296 -16 1425 131 143 12 chr15 17811278 17811537 -67884217 + AluSg1 SINE Alu 1 293 -16 24 0 0 0 chr15 17811537 17811561 -67884193 + AT_rich Low_complexity Low_complexity 1 24 0 1513 174 11 4 chr15 17811562 17811837 -67883917 - AluJo SINE Alu -35 277 1 1798 170 0 43 chr15 17811839 17812163 -67883591 - MER21B LTR ERV1 -547 316 7 995 146 0 0 chr15 17812191 17812349 -67883405 - AluSp/q SINE Alu 0 313 156 1643 78 91 8 chr15 17812350 17812593 -67883161 + AluSq SINE Alu 31 293 -20 2102 93 19 26 chr15 17812717 17813028 -67882726 + AluY SINE Alu 1 309 -2 1651 173 3 0 chr15 17813125 17813414 -67882340 + AluJb SINE Alu 5 294 -18 690 115 0 0 chr15 17813416 17813512 -67882242 + AluSq/x SINE Alu 38 133 -180 1771 133 14 0 chr15 17813515 17813644 -67882110 + AluSx SINE Alu 1 127 -175 2170 83 0 7 chr15 17813644 17813933 -67881821 + AluSc SINE Alu 15 301 -8 1771 133 14 0 chr15 17813933 17814101 -67881653 + AluSx SINE Alu 127 302 0 23 0 0 0 chr15 17814559 17814582 -67881172 + AT_rich Low_complexity Low_complexity 1 23 0 467 243 0 0 chr15 17815003 17815106 -67880648 - FLAM_A SINE Alu -5 137 35 2314 148 61 63 chr15 17815591 17815935 -67879819 - MLT1D LTR MaLR 0 505 161 2366 87 0 0 chr15 17815935 17816246 -67879508 + AluY SINE Alu 1 311 0 2314 148 61 63 chr15 17816246 17816407 -67879347 - MLT1D LTR MaLR -344 161 1 29 0 0 0 chr15 17816412 17816441 -67879313 + AT_rich Low_complexity Low_complexity 1 29 0 1682 163 0 23 chr15 17816488 17816789 -67878965 - AluJo SINE Alu -18 294 1 546 211 9 0 chr15 17816791 17816900 -67878854 - FLAM_A SINE Alu -12 130 21 1734 154 6 41 chr15 17817034 17817163 -67878591 + AluJo SINE Alu 6 138 -174 2279 44 41 3 chr15 17817163 17817456 -67878298 + AluY SINE Alu 1 304 -7 1734 154 6 41 chr15 17817456 17817644 -67878110 + AluJo SINE Alu 138 312 0 1930 127 7 7 chr15 17817651 17817951 -67877803 + AluSc SINE Alu 3 302 -7 1730 188 0 6 chr15 17817978 17818292 -67877462 + 7SLRNA srpRNA srpRNA 1 312 -8 1206 110 0 0 chr15 17818296 17818460 -67877294 + AluSg/x SINE Alu 130 293 -19 1995 93 7 47 chr15 17819018 17819348 -67876406 + AluSx SINE Alu 1 318 0 2279 88 0 25 chr15 17819730 17820047 -67875707 - AluSc SINE Alu 0 309 1 1772 128 14 14 chr15 17820536 17820859 -67874895 - AluSx SINE Alu 0 323 1 521 286 24 9 chr15 17820868 17821078 -67874676 - AluSq SINE Alu -25 288 76 573 138 0 0 chr15 17822077 17822157 -67873597 - AluSq SINE Alu -230 82 3 1751 153 0 0 chr15 17822161 17822443 -67873311 - AluSx SINE Alu -18 294 13 1754 104 0 4 chr15 17822500 17822749 -67873005 + AluSx SINE Alu 64 311 -1 2000 131 7 0 chr15 17822849 17823154 -67872600 + AluSq SINE Alu 1 307 -6 293 226 12 0 chr15 17823157 17823241 -67872513 + G-rich Low_complexity Low_complexity 4 88 0 916 183 99 16 chr15 17823252 17823443 -67872311 + MER58C DNA MER1_type 1 207 -8 338 270 139 38 chr15 17823452 17823503 -67872251 + L1M4 LINE L1 3697 3741 -2405 2169 98 3 3 chr15 17823503 17823808 -67871946 - AluSp SINE Alu -8 305 1 338 270 139 38 chr15 17823808 17823993 -67871761 + L1M4 LINE L1 3741 3957 -2189 550 167 11 11 chr15 17824032 17824122 -67871632 + MER2 DNA MER2_type 1 90 -255 2162 98 0 38 chr15 17824151 17824357 -67871397 + AluSq SINE Alu 1 192 -121 2276 79 26 0 chr15 17824357 17824661 -67871093 + AluSp SINE Alu 1 312 -1 2162 98 0 38 chr15 17824661 17824770 -67870984 + AluSq SINE Alu 192 304 -9 263 177 0 0 chr15 17824793 17824855 -67870899 - MER2 DNA MER2_type -186 159 98 1278 154 18 9 chr15 17824885 17825038 -67870716 + MER2 DNA MER2_type 116 273 -72 2055 123 3 7 chr15 17825038 17825340 -67870414 - AluSx SINE Alu 0 312 12 1278 154 18 9 chr15 17825340 17825407 -67870347 + MER2 DNA MER2_type 273 338 -7 1823 145 0 24 chr15 17825721 17826017 -67869737 + AluJb SINE Alu 2 290 -22 892 181 0 0 chr15 17826021 17826204 -67869550 + AluJo SINE Alu 127 309 0 2415 74 0 7 chr15 17826586 17826883 -67868871 + AluY SINE Alu 1 295 -16 24 32 0 0 chr15 17828049 17828080 -67867674 + AT_rich Low_complexity Low_complexity 1 31 0 360 135 0 0 chr15 17828080 17828132 -67867622 - MER66B LTR ERV1 -140 346 295 2296 75 30 3 chr15 17828233 17828528 -67867226 - AluSx SINE Alu -9 303 1 1309 173 112 61 chr15 17828666 17829094 -67866660 - LTR7 LTR ERV1 0 450 1 2383 99 0 0 chr15 17829347 17829649 -67866105 + AluSx SINE Alu 3 304 -8 2010 92 73 9 chr15 17831309 17831675 -67864079 - LTR7 LTR ERV1 0 450 1 235 227 62 62 chr15 17831711 17831808 -67863946 + Charlie4 DNA MER1_type 1865 1961 0 2076 108 3 26 chr15 17832372 17832679 -67863075 + AluSx SINE Alu 1 300 -12 2278 221 84 31 chr15 17832700 17833108 -67862646 - L1MA9 LINE L1 -30 6282 5824 1678 123 70 66 chr15 17833108 17833409 -67862345 - AluSx SINE Alu -10 302 1 2278 221 84 31 chr15 17833409 17833666 -67862088 - L1MA9 LINE L1 -488 5824 5582 1129 115 0 6 chr15 17833667 17833824 -67861930 + AluSg/x SINE Alu 134 289 -21 355 187 0 13 chr15 17833824 17833899 -67861855 - L1MA9 LINE L1 -717 5586 5513 2300 96 7 0 chr15 17833934 17834225 -67861529 - AluSq SINE Alu -20 293 1 1250 173 82 61 chr15 17834291 17834709 -67861045 - MLT1C LTR MaLR -1 389 1 706 172 17 0 chr15 17834780 17834896 -67860858 + FAM SINE Alu 23 140 -45 1191 171 26 8 chr15 17834896 17835130 -67860624 + L1MB3 LINE L1 5943 6180 -3 223 140 0 35 chr15 17835154 17835211 -67860543 + (TA)n Simple_repeat Simple_repeat 1 55 0 1837 158 38 0 chr15 17835371 17835662 -67860092 + AluSq SINE Alu 1 302 -11 486 0 0 0 chr15 17835662 17835716 -67860038 + (TA)n Simple_repeat Simple_repeat 2 55 0 396 212 71 0 chr15 17835777 17835862 -67859892 + L1MC4a LINE L1 5833 5923 -1885 1848 143 31 0 chr15 17836114 17836407 -67859347 - AluSq SINE Alu -9 304 3 1014 125 65 12 chr15 17836411 17836579 -67859175 - AluSg/x SINE Alu -1 309 133 1186 246 163 18 chr15 17836751 17836895 -67858859 - MLT1F LTR MaLR 0 542 420 2322 84 0 10 chr15 17836895 17837191 -67858563 + AluY SINE Alu 1 293 -18 1186 246 163 18 chr15 17837191 17837433 -67858321 - MLT1F LTR MaLR -122 420 100 2218 101 14 0 chr15 17837466 17837763 -67857991 - AluY SINE Alu -10 301 1 412 235 53 88 chr15 17837767 17837937 -67857817 - MER21B LTR ERV1 -149 714 551 680 201 107 49 chr15 17837941 17838013 -67857741 - L1 LINE L1 -3032 3114 3048 2173 138 0 0 chr15 17838013 17838311 -67857443 - AluSx SINE Alu -14 298 1 978 178 0 0 chr15 17838314 17838477 -67857277 - FAM SINE Alu -12 163 1 680 201 107 49 chr15 17838477 17838644 -67857110 - L1 LINE L1 -3099 3047 2857 571 192 0 10 chr15 17838726 17838830 -67856924 - MLT1F LTR MaLR -439 103 1 1750 277 0 64 chr15 17838877 17839205 -67856549 - AluSp SINE Alu -6 307 1 237 191 0 0 chr15 17839408 17839450 -67856304 + Alu SINE Alu 2 43 -260 283 167 0 0 chr15 17839551 17839593 -67856161 + Alu SINE Alu 247 288 -12 2091 144 0 7 chr15 17839679 17839984 -67855770 - AluSx SINE Alu -5 307 5 897 262 118 42 chr15 17839989 17840502 -67855252 - L2 LINE L2 -8 3305 2763 1635 182 17 7 chr15 17840527 17840818 -67854936 - AluJo SINE Alu -16 296 3 2070 100 0 7 chr15 17841042 17841323 -67854431 - AluSg SINE Alu -31 279 1 631 116 0 74 chr15 17841333 17841454 -67854300 - AluSc SINE Alu -1 308 197 1108 180 109 8 chr15 17841800 17842098 -67853656 - L1MB4 LINE L1 -3 6177 5852 1983 114 10 17 chr15 17842132 17842421 -67853333 - AluSq SINE Alu -26 287 1 1960 128 10 13 chr15 17842661 17842965 -67852789 - AluJo SINE Alu -9 303 1 2265 131 0 0 chr15 17842990 17843302 -67852452 + AluSx SINE Alu 1 312 0 2007 136 0 0 chr15 17843470 17843777 -67851977 - AluSg SINE Alu 0 307 1 2231 115 3 0 chr15 17844441 17844736 -67851018 + AluSx SINE Alu 1 296 -16 952 119 33 7 chr15 17844944 17845118 -67850636 - AluSg/x SINE Alu 0 306 129 26 50 0 0 chr15 17845654 17845694 -67850060 + AT_rich Low_complexity Low_complexity 1 40 0 195 42 0 0 chr15 17846342 17846366 -67849388 + (TA)n Simple_repeat Simple_repeat 2 25 0 1739 130 0 0 chr15 17846818 17847048 -67848706 - AluSx SINE Alu -30 282 53 252 0 0 0 chr15 17847800 17847828 -67847926 + (A)n Simple_repeat Simple_repeat 1 28 0 2170 123 3 10 chr15 17848042 17848351 -67847403 + AluSc SINE Alu 1 307 -2 239 69 0 0 chr15 17850999 17851028 -67844726 - Alu SINE Alu -262 37 9 1673 89 0 14 chr15 17851029 17851242 -67844512 - AluSx SINE Alu -102 210 1 547 167 11 11 chr15 17851271 17851361 -67844393 - MER2 DNA MER2_type -255 90 1 2026 125 3 10 chr15 17851585 17851889 -67843865 + AluSp SINE Alu 1 302 -11 703 233 90 11 chr15 17851951 17852140 -67843614 - MER58C DNA MER1_type -8 207 4 630 245 108 29 chr15 17852755 17852996 -67842758 - MIR SINE MIR -2 260 1 228 37 0 0 chr15 17853141 17853188 -67842566 - Alu SINE Alu 0 300 254 2237 102 7 0 chr15 17853226 17853520 -67842234 - AluSg SINE Alu -14 296 1 1051 193 107 59 chr15 17853630 17853900 -67841854 + AluJb SINE Alu 1 283 -19 1889 122 27 14 chr15 17853929 17854225 -67841529 + AluSx SINE Alu 1 300 -12 2139 120 7 0 chr15 17854621 17854913 -67840841 - AluSx SINE Alu -18 294 1 209 353 88 10 chr15 17854939 17855041 -67840713 + L2 LINE L2 3127 3236 -36 1335 154 124 29 chr15 17855799 17856072 -67839682 - AluJo SINE Alu -8 304 6 2399 76 3 13 chr15 17856261 17856563 -67839191 + AluY SINE Alu 1 299 -12 291 333 0 0 chr15 17856876 17856951 -67838803 - L1M4b LINE L1 -6260 599 525 274 135 62 10 chr15 17856951 17857015 -67838739 + AluSg/x SINE Alu 162 207 -93 1271 132 24 141 chr15 17857017 17857350 -67838404 + AluYb8 SINE Alu 16 309 -9 376 235 185 0 chr15 17857350 17857469 -67838285 - L1M4b LINE L1 -6708 151 11 1910 124 28 21 chr15 17857499 17857782 -67837972 - AluSg SINE Alu -25 285 1 2019 104 71 0 chr15 17857790 17858070 -67837684 - AluSp SINE Alu -13 300 1 2251 121 3 0 chr15 17858070 17858375 -67837379 - AluSp SINE Alu -5 308 3 1258 89 0 0 chr15 17858385 17858543 -67837211 - AluSg/x SINE Alu -21 289 132 2345 90 3 0 chr15 17858544 17858844 -67836910 - AluY SINE Alu -10 301 1 1376 150 37 129 chr15 17859409 17859788 -67835966 - MER2 DNA MER2_type 0 344 1 2365 76 10 0 chr15 17860025 17860315 -67835439 - AluSx SINE Alu -19 293 1 774 122 0 116 chr15 17860440 17860552 -67835202 + AluJo SINE Alu 5 98 -214 2282 118 0 0 chr15 17860552 17860848 -67834906 - AluSx SINE Alu -16 296 1 774 122 0 116 chr15 17860848 17860882 -67834872 + AluJo SINE Alu 98 134 -178 2143 125 3 0 chr15 17860994 17861291 -67834463 + AluSx SINE Alu 1 298 -14 2087 67 60 25 chr15 17861714 17861998 -67833756 + AluY SINE Alu 6 299 -12 922 194 0 18 chr15 17862001 17862171 -67833583 + AluSg/x SINE Alu 129 295 -17 2473 79 0 3 chr15 17862354 17862657 -67833097 + AluY SINE Alu 1 302 -9 2387 86 3 10 chr15 17863222 17863525 -67832229 - AluSc SINE Alu -7 302 2 1710 189 3 10 chr15 17863529 17863825 -67831929 - AluJo SINE Alu -18 294 1 2185 125 3 0 chr15 17863997 17864308 -67831446 - AluSx SINE Alu 0 312 1 630 222 0 17 chr15 17864324 17864441 -67831313 - FLAM_A SINE Alu -18 115 1 1396 196 59 28 chr15 17864563 17864849 -67830905 - AluJo SINE Alu -7 295 1 1178 147 0 11 chr15 17864908 17865085 -67830669 - AluSg/x SINE Alu -3 307 133 1965 124 10 51 chr15 17865086 17865400 -67830354 - AluSx SINE Alu -11 301 1 10251 27 5 188 chr15 17866103 17867834 -67827920 + SVA Other Other 5 1386 0 703 167 24 24 chr15 17868001 17868127 -67827627 + AluJb SINE Alu 2 127 -185 1216 184 24 0 chr15 17868244 17868456 -67827298 - AluJo SINE Alu -11 301 85 2495 74 0 0 chr15 17868501 17868800 -67826954 + AluSq SINE Alu 3 301 -12 1006 105 45 0 chr15 17869058 17869191 -67826563 + AluSq/x SINE Alu 4 142 -171 547 73 0 0 chr15 17869191 17869259 -67826495 - Tigger1 DNA MER2_type -866 1552 1485 4934 103 186 52 chr15 17869264 17869361 -67826393 - Tigger1 DNA MER2_type -1273 1145 1062 1580 191 0 0 chr15 17869361 17869617 -67826137 - AluJo SINE Alu -56 256 1 4934 103 186 52 chr15 17869617 17869832 -67825922 - Tigger1 DNA MER2_type -1356 1062 877 1909 133 13 29 chr15 17869832 17870141 -67825613 - AluJb SINE Alu -8 304 1 4934 103 186 52 chr15 17870141 17870332 -67825422 - Tigger1 DNA MER2_type -1541 877 713 2134 118 10 3 chr15 17870332 17870636 -67825118 - AluSq SINE Alu -7 306 1 4934 103 186 52 chr15 17870636 17870976 -67824778 - Tigger1 DNA MER2_type -1705 713 420 2230 86 23 7 chr15 17870976 17871279 -67824475 + AluY SINE Alu 1 308 -3 4934 103 186 52 chr15 17871279 17871394 -67824360 - Tigger1 DNA MER2_type -1998 420 55 2237 114 3 0 chr15 17871415 17871714 -67824040 + AluSx SINE Alu 1 300 -12 2021 158 0 0 chr15 17871726 17872030 -67823724 + AluSx SINE Alu 1 304 -8 1987 122 13 13 chr15 17872269 17872572 -67823182 - AluSp SINE Alu -10 303 1 245 230 128 47 chr15 17872890 17873038 -67822716 + L1MC5 LINE L1 7755 7914 -47 2276 99 3 7 chr15 17873276 17873580 -67822174 + AluSc SINE Alu 1 303 -6 1400 179 120 7 chr15 17873594 17873868 -67821886 + AluSx SINE Alu 1 305 -7 290 246 0 0 chr15 17873871 17873940 -67821814 + L1MC5 LINE L1 7709 7777 -184 858 126 0 0 chr15 17873956 17874075 -67821679 - FLAM_C SINE Alu -12 131 13 397 232 0 0 chr15 17874098 17874180 -67821574 + L1MC5 LINE L1 7807 7888 -73 825 86 17 0 chr15 17874672 17874789 -67820965 + AluSg/x SINE Alu 189 307 -2 2230 113 0 0 chr15 17875011 17875311 -67820443 - AluSg SINE Alu -10 300 1 1128 169 56 44 chr15 17875342 17875401 -67820353 - MER33 DNA MER1_type -2262 323 266 2137 119 7 0 chr15 17875401 17875694 -67820060 - AluSg1 SINE Alu -14 295 1 1128 169 56 44 chr15 17875694 17875794 -67819960 - MER33 DNA MER1_type -2319 266 169 2185 89 3 33 chr15 17875794 17876097 -67819657 - AluSp SINE Alu -19 294 1 2451 55 24 0 chr15 17876107 17876400 -67819354 - AluY SINE Alu -11 300 1 1128 169 56 44 chr15 17876400 17876547 -67819207 - MER33 DNA MER1_type -2424 161 1 640 152 0 0 chr15 17877045 17877137 -67818617 + AluSg/x SINE Alu 87 178 -134 219 376 144 24 chr15 17877161 17877450 -67818304 - L2 LINE L2 -2425 889 562 2218 85 20 0 chr15 17877450 17877743 -67818011 + AluSp SINE Alu 9 307 -6 1696 158 7 0 chr15 17877919 17878198 -67817556 + AluJb SINE Alu 20 300 -12 685 186 0 0 chr15 17878240 17878353 -67817401 - AluSg/x SINE Alu -11 301 189 1404 113 9 35 chr15 17878453 17878682 -67817072 + AluSp SINE Alu 88 310 -3 1844 139 14 0 chr15 17879180 17879468 -67816286 + AluSg SINE Alu 1 292 -18 719 159 0 0 chr15 17880146 17880253 -67815501 + AluSg/x SINE Alu 193 299 -10 1129 266 200 68 chr15 17880406 17880584 -67815170 + L2 LINE L2 1276 1429 -1885 1673 136 7 45 chr15 17880584 17880893 -67814861 - AluJb SINE Alu 0 312 16 1129 266 200 68 chr15 17880893 17881510 -67814244 + L2 LINE L2 1429 2204 -1110 2142 115 0 6 chr15 17881510 17881824 -67813930 - AluSx SINE Alu 0 312 1 1129 266 200 68 chr15 17881824 17881916 -67813838 + L2 LINE L2 2204 2282 -1032 1978 86 4 0 chr15 17882022 17882278 -67813476 + AluSp SINE Alu 37 293 -20 23 33 0 0 chr15 17882278 17882308 -67813446 + AT_rich Low_complexity Low_complexity 1 30 0 683 183 15 15 chr15 17882314 17882445 -67813309 + FLAM_C SINE Alu 2 132 -1 682 208 0 0 chr15 17882944 17883069 -67812685 + FLAM_A SINE Alu 2 126 -7 42 20 0 0 chr15 17883084 17883133 -67812621 + AT_rich Low_complexity Low_complexity 1 49 0 2195 82 0 41 chr15 17883285 17883604 -67812150 - AluY SINE Alu -5 306 1 557 165 0 0 chr15 17883738 17883823 -67811931 - AluJ/FLAM SINE Alu -225 87 3 836 204 6 23 chr15 17884221 17884233 -67811521 - AluJb SINE Alu -7 305 294 1850 138 6 58 chr15 17884233 17884559 -67811195 - AluSx SINE Alu -3 309 1 836 204 6 23 chr15 17884559 17884718 -67811036 - AluJb SINE Alu -18 294 137 2011 116 3 3 chr15 17884876 17885169 -67810585 + AluSq SINE Alu 3 295 -18 2109 100 6 10 chr15 17885294 17885605 -67810149 + AluSg SINE Alu 1 310 0 904 212 0 12 chr15 17885679 17885844 -67809910 + FRAM SINE Alu 1 163 -3 2150 117 0 0 chr15 17885886 17886195 -67809559 + AluSx SINE Alu 1 309 -3 2200 92 0 10 chr15 17886473 17886778 -67808976 - AluSg SINE Alu -7 303 2 2283 84 7 7 chr15 17886781 17887090 -67808664 - AluSq SINE Alu -4 309 1 1411 181 50 7 chr15 17887093 17887374 -67808380 - AluJb SINE Alu -19 293 1 1997 119 3 3 chr15 17887379 17887674 -67808080 - AluSg SINE Alu -15 295 1 2288 79 0 13 chr15 17887767 17888072 -67807682 - AluY SINE Alu -10 301 1 189 0 0 0 chr15 17888276 17888297 -67807457 + (A)n Simple_repeat Simple_repeat 1 21 0 657 280 142 8 chr15 17888304 17888543 -67807211 - L2 LINE L2 -2054 1260 990 264 30 0 0 chr15 17888648 17888681 -67807073 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1874 108 3 21 chr15 17888681 17888967 -67806787 - AluSq SINE Alu -32 281 1 27 96 0 0 chr15 17888967 17889050 -67806704 + AT_rich Low_complexity Low_complexity 1 83 0 309 101 38 114 chr15 17889078 17889236 -67806518 + (TATAG)n Simple_repeat Simple_repeat 2 147 0 287 112 21 64 chr15 17889265 17889453 -67806301 + (TA)n Simple_repeat Simple_repeat 1 180 0 182 100 0 78 chr15 17889488 17889578 -67806176 + (TA)n Simple_repeat Simple_repeat 1 83 0 213 156 47 16 chr15 17889618 17889682 -67806072 + (TA)n Simple_repeat Simple_repeat 1 66 0 21 0 0 0 chr15 17889686 17889707 -67806047 + AT_rich Low_complexity Low_complexity 1 21 0 511 229 60 27 chr15 17889890 17890073 -67805681 - L1MC5 LINE L1 -44 7917 7729 932 93 0 0 chr15 17890098 17890227 -67805527 + AluJb SINE Alu 1 129 -183 1697 65 5 0 chr15 17890528 17890742 -67805012 + AluSg SINE Alu 1 215 -95 1028 149 36 5 chr15 17890913 17891108 -67804646 + AluJo SINE Alu 87 287 -25 180 0 0 0 chr15 17892829 17892849 -67802905 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1657 87 97 67 chr15 17893159 17893457 -67802297 + AluSx SINE Alu 1 307 -5 2044 125 0 3 chr15 17894293 17894597 -67801157 + AluSx SINE Alu 1 303 -9 390 277 152 48 chr15 17894935 17895166 -67800588 + MIR SINE MIR 7 261 -1 696 71 0 10 chr15 17895469 17895568 -67800186 + AluY SINE Alu 211 308 -3 978 71 169 0 chr15 17895598 17895752 -67800002 - AluSp SINE Alu 0 313 134 1219 71 0 0 chr15 17895854 17896008 -67799746 + AluSg/x SINE Alu 154 307 -5 244 204 0 0 chr15 17896144 17896193 -67799561 + L2 LINE L2 3265 3313 0 211 237 53 66 chr15 17896436 17896512 -67799242 + MER5A DNA MER1_type 1 75 -114 2202 83 0 7 chr15 17896512 17896812 -67798942 + AluY SINE Alu 1 298 -13 464 195 0 0 chr15 17896832 17896909 -67798845 + FLAM_A SINE Alu 45 121 -21 1605 171 18 3 chr15 17897193 17897479 -67798275 + AluJb SINE Alu 7 296 -16 414 195 8 6 chr15 17897936 17898188 -67797566 + AluJb SINE Alu 1 301 -11 22 56 0 0 chr15 17898200 17898236 -67797518 + AT_rich Low_complexity Low_complexity 1 36 0 1768 146 14 7 chr15 17898236 17898531 -67797223 + AluJo SINE Alu 3 299 -13 1562 114 28 0 chr15 17898538 17898793 -67796961 + AluSp SINE Alu 1 262 -51 336 267 84 0 chr15 17898905 17899036 -67796718 + MER112 DNA MER1_type 30 171 -89 206 391 33 0 chr15 17899441 17899533 -67796221 + L2 LINE L2 3182 3276 -37 2063 106 0 3 chr15 17899554 17899869 -67795885 + AluSx SINE Alu 1 314 0 1869 112 14 0 chr15 17899939 17900216 -67795538 + AluSx SINE Alu 1 281 -31 2365 64 3 0 chr15 17900536 17900834 -67794920 + AluSg1 SINE Alu 1 299 -10 1483 118 36 5 chr15 17901337 17901595 -67794159 + AluSx SINE Alu 58 322 0 1571 183 3 20 chr15 17901595 17901901 -67793853 + AluJb SINE Alu 1 301 -11 808 488 8 8 chr15 17901959 17902205 -67793549 - AluSx SINE Alu -13 299 54 371 198 0 25 chr15 17902212 17902293 -67793461 - L1M4 LINE L1 -1067 5079 5001 1095 110 7 0 chr15 17902294 17902449 -67793305 - AluSg/x SINE Alu -23 287 132 1955 110 10 7 chr15 17902449 17902740 -67793014 - AluSg1 SINE Alu -17 292 1 2173 60 18 3 chr15 17902753 17903038 -67792716 - AluY SINE Alu -20 291 3 2264 80 0 13 chr15 17903040 17903340 -67792414 - AluY SINE Alu -11 300 5 906 219 0 17 chr15 17903347 17903525 -67792229 - FAM SINE Alu 0 175 1 375 167 77 0 chr15 17903526 17903604 -67792150 - L1M4 LINE L1 -1141 5005 4922 1413 131 6 125 chr15 17903646 17903782 -67791972 + AluJb SINE Alu 1 152 -160 1482 180 7 20 chr15 17903782 17904077 -67791677 + AluJo SINE Alu 1 291 -21 1413 131 6 125 chr15 17904077 17904291 -67791463 + AluJb SINE Alu 152 309 -3 6523 55 6 42 chr15 17904327 17905561 -67790193 - SVA Other Other -520 1386 432 2387 61 0 0 chr15 17905790 17906084 -67789670 + AluY SINE Alu 2 295 -16 2230 95 10 0 chr15 17906097 17906403 -67789351 + AluY SINE Alu 2 310 -1 23 86 0 0 chr15 17906477 17906535 -67789219 + AT_rich Low_complexity Low_complexity 1 58 0 1160 258 67 100 chr15 17906567 17906682 -67789072 - L2 LINE L2 -18 3295 3178 1639 141 65 21 chr15 17906682 17906972 -67788782 + AluSq SINE Alu 1 303 -10 1160 258 67 100 chr15 17906972 17907408 -67788346 - L2 LINE L2 -135 3178 2729 2070 132 0 3 chr15 17907408 17907718 -67788036 - AluSx SINE Alu -3 309 1 1160 258 67 100 chr15 17907718 17907760 -67787994 - L2 LINE L2 -584 2729 2687 2251 119 35 22 chr15 17907760 17908130 -67787624 + THE1C LTR MaLR 1 375 0 1160 258 67 100 chr15 17908130 17908445 -67787309 - L2 LINE L2 -626 2687 2434 2198 107 0 23 chr15 17908466 17908636 -67787118 - AluSx SINE Alu -9 303 131 2122 54 50 24 chr15 17908636 17908934 -67786820 - AluY SINE Alu -5 306 1 2130 71 32 0 chr15 17908934 17909215 -67786539 - AluSc SINE Alu -19 290 1 2198 107 0 23 chr15 17909215 17909353 -67786401 - AluSx SINE Alu -179 133 1 2309 68 3 19 chr15 17909364 17909672 -67786082 - AluSp SINE Alu -4 309 7 490 78 0 65 chr15 17909966 17910043 -67785711 - Alu SINE Alu -7 302 231 860 94 0 0 chr15 17910043 17910160 -67785594 - AluSq/x SINE Alu -195 117 1 1064 173 6 0 chr15 17911726 17911922 -67783832 - AluJb SINE Alu 0 306 110 430 73 0 0 chr15 17911942 17911997 -67783757 + AluSc SINE Alu 29 83 -226 2400 59 0 0 chr15 17911999 17912302 -67783452 + AluY SINE Alu 1 303 -8 1618 112 4 0 chr15 17912302 17912535 -67783219 + AluSg/x SINE Alu 77 310 0 469 219 29 0 chr15 17912548 17912653 -67783101 - FLAM_C SINE Alu -34 109 2 818 138 0 128 chr15 17912654 17912691 -67783063 - AluJo/FRAM SINE Alu -7 305 265 1951 108 38 0 chr15 17912691 17912978 -67782776 + AluSq SINE Alu 1 298 -15 818 138 0 128 chr15 17912978 17913143 -67782611 - AluJo/FRAM SINE Alu -47 265 129 2099 117 0 3 chr15 17913155 17913462 -67782292 + AluSq SINE Alu 1 306 -7 1952 128 0 10 chr15 17913466 17913601 -67782153 + AluSq SINE Alu 1 136 -177 1852 114 28 3 chr15 17913601 17913890 -67781864 + AluSx SINE Alu 1 296 -16 1952 128 0 10 chr15 17913890 17914051 -67781703 + AluSq SINE Alu 136 294 -19 2681 10 0 7 chr15 17914055 17914364 -67781390 + AluYa5 SINE Alu 1 307 -4 279 135 0 0 chr15 17914364 17914401 -67781353 + AluSq SINE Alu 126 162 -141 1001 146 0 0 chr15 17914403 17914568 -67781186 + AluSg/x SINE Alu 144 308 -4 1915 103 18 0 chr15 17914574 17914846 -67780908 + AluSp SINE Alu 1 277 -36 978 106 0 0 chr15 17914950 17915082 -67780672 - AluY SINE Alu -179 132 1 181 347 71 0 chr15 17915109 17915207 -67780547 - MIR SINE MIR -59 203 99 1841 101 44 40 chr15 17915218 17915514 -67780240 - AluSx SINE Alu -15 297 1 1186 98 0 0 chr15 17915514 17915678 -67780076 - AluSg/x SINE Alu -9 301 138 2218 79 31 0 chr15 17915681 17915972 -67779782 - AluSx SINE Alu -12 300 1 618 213 147 0 chr15 17916385 17916535 -67779219 - MIR SINE MIR -25 237 66 2436 63 0 0 chr15 17916975 17917276 -67778478 - AluSg SINE Alu -9 301 1 2113 82 32 0 chr15 17917536 17917818 -67777936 - AluSg SINE Alu -19 291 1 180 77 0 0 chr15 17918190 17918216 -67777538 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 2187 106 0 0 chr15 17918557 17918850 -67776904 + AluSx SINE Alu 1 293 -19 2385 69 10 3 chr15 17918905 17919210 -67776544 + AluSg SINE Alu 1 307 -3 2287 81 3 0 chr15 17920490 17920786 -67774968 - AluSg SINE Alu -13 297 1 1945 127 0 119 chr15 17921062 17921146 -67774608 + MER7A DNA MER2_type 1 93 -2945 1279 129 32 5 chr15 17921146 17921356 -67774398 + L1PA13 LINE L1 5939 6157 -6 2339 76 0 16 chr15 17921356 17921670 -67774084 - AluY SINE Alu -2 309 1 1945 127 0 119 chr15 17921676 17921739 -67774015 + MER7A DNA MER2_type 93 162 -2876 1444 167 3 54 chr15 17921739 17921909 -67773845 - AluJo SINE Alu -11 301 153 2230 90 7 0 chr15 17921909 17922209 -67773545 - AluSq SINE Alu -11 302 1 1444 167 3 54 chr15 17922209 17922355 -67773399 - AluJo SINE Alu -159 153 1 1945 127 0 119 chr15 17922355 17922584 -67773170 + MER7A DNA MER2_type 162 331 -15 387 267 118 33 chr15 17922634 17922942 -67772812 + MLT1J LTR MaLR 154 582 -33 1759 152 0 10 chr15 17923459 17923761 -67771993 - AluSx SINE Alu -13 299 1 831 204 0 7 chr15 17924053 17924205 -67771549 + FAM SINE Alu 1 151 -34 2051 125 10 0 chr15 17924336 17924639 -67771115 + AluSq SINE Alu 1 306 -7 2118 107 3 0 chr15 17924705 17925004 -67770750 + AluSg SINE Alu 3 302 -8 567 187 22 93 chr15 17925226 17925365 -67770389 + FLAM_A SINE Alu 2 130 -3 255 241 191 35 chr15 17925365 17925506 -67770248 - MIR3 SINE MIR -44 164 2 2312 87 0 0 chr15 17925532 17925832 -67769922 + AluSg SINE Alu 1 300 -10 967 164 12 0 chr15 17925848 17926013 -67769741 - AluSg/x SINE Alu -28 282 116 1330 129 5 0 chr15 17926252 17926461 -67769293 + AluSg/x SINE Alu 100 309 -1 493 261 43 27 chr15 17926465 17926653 -67769101 - L1M4 LINE L1 -2199 3947 3757 461 199 0 117 chr15 17926673 17926750 -67769004 - L1M4 LINE L1 -2374 3772 3688 2189 69 0 31 chr15 17926750 17927065 -67768689 - AluY SINE Alu 0 306 1 461 199 0 117 chr15 17927065 17927111 -67768643 - L1M4 LINE L1 -2458 3688 3671 1874 156 10 0 chr15 17927111 17927419 -67768335 + AluSx SINE Alu 1 311 -1 461 199 0 117 chr15 17927419 17927464 -67768290 - L1M4 LINE L1 -2475 3671 3622 243 222 0 0 chr15 17927469 17927532 -67768222 - L1MA10 LINE L1 -6 6328 6266 962 108 0 0 chr15 17927534 17927663 -67768091 + AluSq/x SINE Alu 1 129 -184 207 0 0 0 chr15 17927663 17927686 -67768068 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 343 203 152 0 chr15 17927687 17927766 -67767988 - L1MA10 LINE L1 -60 6274 6184 579 68 0 0 chr15 17927806 17927879 -67767875 + AluS SINE Alu 2 74 -238 2056 118 0 31 chr15 17928373 17928553 -67767201 - AluSq SINE Alu 0 313 146 2441 66 0 0 chr15 17928553 17928858 -67766896 - AluY SINE Alu -6 305 1 2056 118 0 31 chr15 17928858 17929000 -67766754 - AluSq SINE Alu -167 146 1 220 310 0 0 chr15 17929089 17929147 -67766607 + L2 LINE L2 3215 3272 0 244 342 82 58 chr15 17930154 17930397 -67765357 - L2 LINE L2 -92 3180 2932 1562 136 21 133 chr15 17930609 17930851 -67764903 - AluJo SINE Alu 0 302 34 2099 75 0 59 chr15 17930851 17931172 -67764582 - AluY SINE Alu -9 302 1 2153 90 10 3 chr15 17931176 17931465 -67764289 - AluSc SINE Alu -16 293 3 1562 136 21 133 chr15 17931465 17931555 -67764199 - AluJo SINE Alu -271 31 3 886 253 87 29 chr15 17931559 17931836 -67763918 + L2 LINE L2 3016 3308 -5 404 165 94 0 chr15 17931884 17931969 -67763785 - FRAM SINE Alu 0 166 74 988 122 32 0 chr15 17932085 17932241 -67763513 + AluSc SINE Alu 135 295 -14 216 100 0 25 chr15 17932284 17932324 -67763430 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 306 200 50 0 chr15 17932599 17932659 -67763095 + MIR SINE MIR 129 191 -71 1189 233 20 0 chr15 17933043 17933292 -67762462 + MIR SINE MIR 8 261 -1 374 287 46 0 chr15 17933299 17933386 -67762368 - L2 LINE L2 -19 3253 3163 1898 151 13 0 chr15 17933657 17933961 -67761793 + AluJb SINE Alu 1 308 -4 278 193 246 0 chr15 17934028 17934142 -67761612 - MLT1L LTR MaLR -52 563 422 1696 169 6 22 chr15 17934495 17934809 -67760945 - AluJb SINE Alu -3 309 1 2291 96 3 10 chr15 17935144 17935458 -67760296 + AluSx SINE Alu 1 312 0 2150 103 3 3 chr15 17935492 17935793 -67759961 + AluSq SINE Alu 1 301 -12 2097 105 3 0 chr15 17936065 17936376 -67759378 + AluSq SINE Alu 1 312 0 2456 143 22 33 chr15 17936653 17936783 -67758971 + L1MB3 LINE L1 5701 5831 -352 2171 112 0 0 chr15 17936783 17937079 -67758675 + AluSg SINE Alu 1 296 -14 2456 143 22 33 chr15 17937079 17937436 -67758318 + L1MB3 LINE L1 5831 6183 0 2158 128 0 0 chr15 17937443 17937748 -67758006 + AluSx SINE Alu 1 305 -7 1025 169 14 29 chr15 17937799 17938006 -67757748 + AluJb SINE Alu 87 290 -22 866 138 0 36 chr15 17938017 17938155 -67757599 + AluJo/FLAM SINE Alu 1 133 -169 2106 96 0 17 chr15 17938158 17938459 -67757295 + AluSg SINE Alu 1 296 -14 525 200 30 0 chr15 17938477 17938577 -67757177 - FLAM_A SINE Alu -19 123 21 1745 70 9 0 chr15 17938589 17938816 -67756938 - AluSq SINE Alu -84 229 1 229 354 97 9 chr15 17938817 17938930 -67756824 + L2 LINE L2 3191 3313 0 1454 186 13 43 chr15 17939255 17939556 -67756198 + AluJb SINE Alu 1 292 -20 268 268 108 57 chr15 17939596 17939790 -67755964 + MLT1J LTR MaLR 239 442 -69 2033 115 0 0 chr15 17939892 17940179 -67755575 + AluSq SINE Alu 12 298 -15 1677 150 11 18 chr15 17940179 17940499 -67755255 + AluSx SINE Alu 1 318 0 2288 75 0 0 chr15 17940549 17940841 -67754913 + AluY SINE Alu 1 292 -19 2105 84 10 29 chr15 17941966 17942274 -67753480 + AluSx SINE Alu 1 302 -10 2146 121 0 0 chr15 17942348 17942653 -67753101 + AluSq SINE Alu 3 307 -6 374 278 21 0 chr15 17942994 17943091 -67752663 - MIR SINE MIR -118 144 46 699 105 0 9 chr15 17943281 17943386 -67752368 - AluSc SINE Alu -14 295 192 1750 92 62 45 chr15 17943776 17944068 -67751686 + AluSx SINE Alu 1 297 -15 1971 105 7 3 chr15 17944068 17944380 -67751374 + AluSp SINE Alu 1 313 0 2306 70 3 0 chr15 17944663 17944963 -67750791 - AluSx SINE Alu -11 301 1 180 111 0 0 chr15 17945885 17945912 -67749842 + (TTCC)n Simple_repeat Simple_repeat 4 30 0 2229 96 0 0 chr15 17946788 17947089 -67748665 - AluSx SINE Alu -10 302 2 299 367 51 17 chr15 17947466 17947643 -67748111 - L3 LINE CR1 -12 1565 1383 182 356 27 27 chr15 17948141 17948214 -67747540 - L2 LINE L2 -12 3260 3188 1605 179 0 28 chr15 17948517 17948836 -67746918 - AluJo SINE Alu -2 310 1 586 228 72 24 chr15 17949208 17949375 -67746379 + MIR SINE MIR 85 259 -3 1761 133 23 26 chr15 17949816 17950124 -67745630 + AluJb SINE Alu 1 307 -5 1050 159 6 6 chr15 17950662 17950825 -67744929 - FRAM SINE Alu -3 163 1 1899 153 0 0 chr15 17950835 17951135 -67744619 - AluJb SINE Alu -3 309 10 319 235 49 86 chr15 17951252 17951414 -67744340 - L1MC4 LINE L1 -138 7904 7749 2051 121 0 0 chr15 17951415 17951712 -67744042 - AluSq SINE Alu -16 297 1 2197 109 0 3 chr15 17951715 17952028 -67743726 - AluSx SINE Alu 0 312 1 1937 98 79 0 chr15 17952460 17952737 -67743017 - AluSc SINE Alu -10 299 1 29 0 0 0 chr15 17952807 17952836 -67742918 + AT_rich Low_complexity Low_complexity 1 29 0 504 234 0 0 chr15 17952836 17952943 -67742811 - AluJb SINE Alu -205 107 1 21 0 0 0 chr15 17952987 17953008 -67742746 + AT_rich Low_complexity Low_complexity 1 21 0 2223 103 3 0 chr15 17953121 17953423 -67742331 + AluSp SINE Alu 1 303 -10 2057 116 0 0 chr15 17953507 17953800 -67741954 - AluSc SINE Alu -16 293 1 248 308 55 0 chr15 17954015 17954106 -67741648 - MIR SINE MIR -1 261 166 918 126 0 7 chr15 17955132 17955267 -67740487 + AluSg/x SINE Alu 145 278 -32 180 0 0 0 chr15 17955272 17955292 -67740462 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2279 103 3 0 chr15 17955311 17955622 -67740132 + AluSq SINE Alu 1 312 -1 770 109 0 0 chr15 17955708 17955809 -67739945 + AluS SINE Alu 2 102 -211 2116 95 7 0 chr15 17956399 17956693 -67739061 + AluSg SINE Alu 1 296 -14 1062 190 68 0 chr15 17956988 17957193 -67738561 + MER20 DNA MER1_type 1 219 0 1751 168 71 69 chr15 17957484 17957658 -67738096 - L1MB7 LINE L1 -135 6049 5877 1955 99 0 64 chr15 17957658 17957971 -67737783 + AluSx SINE Alu 1 293 -19 1751 168 71 69 chr15 17957971 17958230 -67737524 - L1MB7 LINE L1 -307 5877 5615 1445 207 6 9 chr15 17958226 17958545 -67737209 - L1MB7 LINE L1 -935 5211 4894 * 2130 99 6 22 chr15 17958783 17959097 -67736657 - AluSq SINE Alu -4 309 1 312 182 65 0 chr15 17959112 17959189 -67736565 - FLAM_A SINE Alu 0 133 52 1304 98 88 0 chr15 17959189 17959383 -67736371 + AluY SINE Alu 87 297 -14 778 128 40 0 chr15 17959385 17959510 -67736244 + FLAM_C SINE Alu 3 132 -1 1789 157 3 13 chr15 17959563 17959863 -67735891 + AluSx SINE Alu 1 297 -15 1257 81 0 0 chr15 17960005 17960212 -67735542 + AluY SINE Alu 121 327 0 284 324 0 0 chr15 17960278 17960346 -67735408 - L2 LINE L2 -2 3311 3244 986 199 0 0 chr15 17960346 17960527 -67735227 - AluJb SINE Alu -12 300 120 774 199 0 0 chr15 17960621 17960762 -67734992 - FLAM_C SINE Alu -1 142 2 848 129 0 8 chr15 17960828 17960960 -67734794 + AluJb SINE Alu 1 131 -181 1471 161 97 4 chr15 17961372 17961651 -67734103 - AluJb SINE Alu -7 305 1 2394 84 0 0 chr15 17961660 17961969 -67733785 - AluY SINE Alu -2 309 1 21 0 0 0 chr15 17962026 17962047 -67733707 + AT_rich Low_complexity Low_complexity 1 21 0 1025 67 7 0 chr15 17962325 17962460 -67733294 - AluSg SINE Alu -170 140 5 1593 176 0 18 chr15 17962467 17962746 -67733008 - AluJo SINE Alu -21 291 18 2006 124 0 19 chr15 17962849 17963156 -67732598 + AluSx SINE Alu 1 301 -11 234 289 106 14 chr15 17963564 17963706 -67732048 + HAL1 LINE L1 1283 1437 -1070 2074 115 3 16 chr15 17963715 17964027 -67731727 - AluSc SINE Alu -1 308 1 781 167 88 49 chr15 17964050 17964254 -67731500 - L1ME3A LINE L1 -10 6160 5949 2128 156 15 9 chr15 17964358 17964691 -67731063 + MER1B DNA MER1_type 3 337 0 315 59 0 39 chr15 17964702 17964753 -67731001 - FLAM_A SINE Alu 0 133 85 1181 141 22 0 chr15 17964753 17964937 -67730817 - AluSp SINE Alu -125 188 1 2165 88 17 0 chr15 17965066 17965362 -67730392 - AluSg1 SINE Alu -8 301 1 2481 68 0 0 chr15 17965823 17966132 -67729622 - AluSc SINE Alu 0 309 1 2135 82 4 0 chr15 17966320 17966650 -67729104 - AluY SINE Alu 0 331 1 1613 179 3 28 chr15 17966671 17966989 -67728765 - AluJo SINE Alu -2 310 1 787 205 104 69 chr15 17967824 17968216 -67727538 - L1MC4 LINE L1 -10 7985 7533 238 87 152 0 chr15 17968366 17968412 -67727342 + AluSp/q SINE Alu 251 303 0 2034 102 0 17 chr15 17968453 17968748 -67727006 + AluSx SINE Alu 1 290 -22 548 265 143 16 chr15 17968782 17968971 -67726783 + MIR SINE MIR 20 232 -30 359 189 2 116 chr15 17969961 17970097 -67725657 - L1MC4 LINE L1 -1 8040 7889 573 122 128 13 chr15 17970119 17970275 -67725479 - Charlie5 DNA MER1_type -36 2576 2403 977 101 7 7 chr15 17970277 17970426 -67725328 - AluSg/x SINE Alu -6 306 158 446 213 70 48 chr15 17970568 17970776 -67724978 - L1MC4 LINE L1 -248 7560 7426 21 0 0 0 chr15 17971684 17971705 -67724049 + AT_rich Low_complexity Low_complexity 1 21 0 1794 112 84 3 chr15 17971997 17972283 -67723471 - AluSx SINE Alu -3 309 1 2117 117 3 0 chr15 17972648 17972947 -67722807 - AluSx SINE Alu -12 300 1 338 280 180 11 chr15 17972967 17973156 -67722598 + L1ME4a LINE L1 5743 5963 -158 792 179 7 14 chr15 17973156 17973301 -67722453 - AluSg/x SINE Alu -32 280 137 240 35 0 0 chr15 17973301 17973330 -67722424 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 310 97 0 48 chr15 17973340 17973402 -67722352 + (TTTCC)n Simple_repeat Simple_repeat 1 59 0 1622 122 12 8 chr15 17973403 17973658 -67722096 - AluSx SINE Alu -6 306 51 2015 104 0 0 chr15 17973758 17974028 -67721726 - AluSg SINE Alu -40 270 1 2526 49 0 0 chr15 17974034 17974339 -67721415 - AluY SINE Alu -6 305 1 349 197 0 0 chr15 17974339 17974400 -67721354 + AluY SINE Alu 114 174 -127 908 162 14 0 chr15 17974421 17974569 -67721185 + AluJb SINE Alu 136 285 -27 237 125 50 0 chr15 17974604 17974644 -67721110 + L2 LINE L2 3266 3307 -6 2211 97 0 3 chr15 17974677 17974975 -67720779 - AluSq SINE Alu -16 297 1 235 160 0 40 chr15 17974984 17975034 -67720720 - Alu SINE Alu 0 133 86 2417 81 0 3 chr15 17975146 17975456 -67720298 - AluY SINE Alu -2 309 1 1550 140 3 101 chr15 17975465 17975628 -67720126 - AluJo SINE Alu -16 296 179 1887 138 10 7 chr15 17975628 17975925 -67719829 - AluSx SINE Alu -14 298 1 1550 140 3 101 chr15 17975925 17976089 -67719665 - AluJo SINE Alu -133 179 1 337 299 64 35 chr15 17976400 17976670 -67719084 + L1MC4 LINE L1 7720 8002 -40 2191 105 3 3 chr15 17976670 17976974 -67718780 - AluSp SINE Alu -9 304 1 337 299 64 35 chr15 17976974 17977017 -67718737 + L1MC4 LINE L1 8002 8042 0 1894 139 30 0 chr15 17977035 17977336 -67718418 - AluSq SINE Alu -3 310 1 665 310 205 15 chr15 17977337 17977795 -67717959 + L2 LINE L2 2772 3313 0 2042 113 0 10 chr15 17978334 17978627 -67717127 - AluSg SINE Alu -20 290 1 366 317 103 34 chr15 17979002 17979264 -67716490 + L2 LINE L2 2682 2961 -353 2132 97 3 3 chr15 17979820 17980118 -67715636 + AluSx SINE Alu 1 298 -14 234 284 39 39 chr15 17980308 17980410 -67715344 + MIR3 SINE MIR 14 115 -93 2258 100 0 0 chr15 17980566 17980867 -67714887 - AluSx SINE Alu -11 301 1 2120 82 3 36 chr15 17980886 17981190 -67714564 - AluSq SINE Alu -19 294 1 598 223 0 0 chr15 17981205 17981326 -67714428 - FLAM_A SINE Alu -10 123 3 266 239 15 0 chr15 17981334 17981401 -67714353 - MIR SINE MIR -73 189 122 459 137 0 0 chr15 17981826 17981899 -67713855 - AluJ/FRAM SINE Alu -7 305 233 2035 125 3 3 chr15 17981899 17982204 -67713550 - AluSg1 SINE Alu -4 305 1 1918 112 14 0 chr15 17982207 17982512 -67713242 - AluSc SINE Alu 0 309 1 982 103 0 0 chr15 17982512 17982648 -67713106 - AluSq/x SINE Alu -176 136 1 401 301 131 56 chr15 17982710 17983069 -67712685 + L2 LINE L2 2329 2714 -600 2182 94 0 7 chr15 17983069 17983376 -67712378 + AluSq SINE Alu 1 305 -8 970 58 79 0 chr15 17983376 17983554 -67712200 + AluSq SINE Alu 134 322 0 910 99 8 0 chr15 17983567 17983698 -67712056 + FLAM_C SINE Alu 1 132 -11 293 315 135 37 chr15 17983702 17983997 -67711757 + L2 LINE L2 2705 3029 -243 227 226 12 48 chr15 17984318 17984402 -67711352 + (CGGGG)n Simple_repeat Simple_repeat 4 84 0 189 107 0 0 chr15 17984432 17984460 -67711294 + (CGG)n Simple_repeat Simple_repeat 3 30 0 257 312 0 54 chr15 17985551 17985644 -67710110 + MIR3 SINE MIR 8 95 -113 996 41 57 0 chr15 17985825 17985948 -67709806 + AluSp SINE Alu 1 130 -183 2099 89 16 20 chr15 17986811 17987114 -67708640 - AluY SINE Alu -9 302 1 965 171 0 17 chr15 17987202 17987220 -67708534 - AluSg/x SINE Alu -1 311 294 2074 100 3 7 chr15 17987220 17987521 -67708233 - AluSc SINE Alu -9 300 1 965 171 0 17 chr15 17987521 17987683 -67708071 - AluSg/x SINE Alu -18 294 134 2017 118 0 38 chr15 17987683 17987852 -67707902 - AluSx SINE Alu -9 303 150 2116 88 10 29 chr15 17987852 17988158 -67707596 - AluY SINE Alu -11 300 1 2017 118 0 38 chr15 17988158 17988303 -67707451 - AluSx SINE Alu -162 150 1 347 165 122 139 chr15 17988303 17988418 -67707336 - MIR SINE MIR -133 129 17 421 185 0 0 chr15 17988855 17988920 -67706834 + AluJ/FLAM SINE Alu 3 67 -245 21 0 0 0 chr15 17988974 17988995 -67706759 + AT_rich Low_complexity Low_complexity 1 21 0 936 64 0 8 chr15 17989240 17989365 -67706389 + AluSg/x SINE Alu 175 298 -14 2259 86 0 3 chr15 17989401 17989703 -67706051 + AluSg SINE Alu 1 301 -9 1084 188 125 22 chr15 17989763 17990035 -67705719 - L1ME1 LINE L1 -118 6048 5749 855 206 44 29 chr15 17990145 17990349 -67705405 - AluJb SINE Alu -21 291 85 2087 99 0 3 chr15 17990371 17990706 -67705048 + AluSc SINE Alu 1 334 0 2063 119 3 0 chr15 17990715 17991009 -67704745 + AluSx SINE Alu 1 295 -17 2322 82 3 0 chr15 17991358 17991663 -67704091 + AluY SINE Alu 1 306 -5 1391 215 7 7 chr15 17991665 17991972 -67703782 + AluJo SINE Alu 1 307 -5 1400 104 5 0 chr15 17992010 17992202 -67703552 - AluSq SINE Alu -120 193 1 828 144 0 0 chr15 17992226 17992344 -67703410 - FLAM_C SINE Alu -15 118 1 1900 112 25 0 chr15 17992451 17992757 -67702997 - AluSq SINE Alu 0 313 1 254 310 77 52 chr15 17993146 17993301 -67702453 + L2 LINE L2 3151 3309 -4 2124 135 0 0 chr15 17993579 17993891 -67701863 - AluSq SINE Alu -1 312 1 3728 96 40 42 chr15 17993929 17994525 -67701229 - LTR61 LTR ERV1 0 595 1 1529 193 91 36 chr15 17995021 17995328 -67700426 - MLT1C LTR MaLR -3 464 124 1541 203 10 3 chr15 17995328 17995623 -67700131 + AluJb SINE Alu 1 297 -15 1529 193 91 36 chr15 17995623 17995755 -67699999 - MLT1C LTR MaLR -343 124 1 2247 87 0 3 chr15 17995768 17996066 -67699688 - AluSg SINE Alu -13 297 1 36 23 0 0 chr15 17996103 17996146 -67699608 + AT_rich Low_complexity Low_complexity 1 43 0 277 183 16 35 chr15 17996333 17996401 -67699353 - MER5A DNA MER1_type -87 102 26 1510 131 123 8 chr15 17996402 17996681 -67699073 - AluSg1 SINE Alu 0 308 1 1186 221 55 18 chr15 17996683 17996971 -67698783 - L1MC4 LINE L1 -476 7566 7263 1833 146 30 0 chr15 17996971 17997266 -67698488 - AluSx SINE Alu -8 304 1 1186 221 55 18 chr15 17997266 17997307 -67698447 - L1MC4 LINE L1 -779 7263 7225 204 306 49 54 chr15 17997598 17997799 -67697955 + L2 LINE L2 2796 2997 -275 673 200 9 0 chr15 17997919 17998034 -67697720 + FLAM_A SINE Alu 1 116 -17 2005 117 14 0 chr15 17998049 17998339 -67697415 + AluSx SINE Alu 1 294 -18 180 0 0 0 chr15 17998495 17998515 -67697239 + (TA)n Simple_repeat Simple_repeat 2 21 0 26 0 0 0 chr15 17998516 17998542 -67697212 + AT_rich Low_complexity Low_complexity 1 26 0 2275 68 0 7 chr15 17998561 17998856 -67696898 + AluY SINE Alu 1 293 -18 809 127 0 0 chr15 17998856 17998974 -67696780 - AluJo/FLAM SINE Alu -194 118 1 2207 96 0 0 chr15 17998986 17999288 -67696466 - AluSc SINE Alu 0 309 8 2284 86 0 6 chr15 17999489 17999802 -67695952 - AluY SINE Alu 0 311 1 265 305 79 89 chr15 18000029 18000171 -67695583 + MIR SINE MIR 12 153 -109 2025 124 0 3 chr15 18000171 18000477 -67695277 - AluSc SINE Alu -4 305 1 265 305 79 89 chr15 18000477 18000524 -67695230 + MIR SINE MIR 153 199 -63 319 200 211 11 chr15 18000815 18000910 -67694844 + MER58 DNA MER1_type 3 116 -99 1147 135 6 0 chr15 18000911 18001089 -67694665 + AluSq SINE Alu 1 179 -134 1406 103 0 5 chr15 18001190 18001384 -67694370 - AluSp SINE Alu -120 193 1 226 245 19 0 chr15 18001384 18001437 -67694317 + MER58 DNA MER1_type 2367 2420 0 1948 116 14 3 chr15 18002094 18002387 -67693367 + AluSx SINE Alu 1 296 -16 783 143 0 16 chr15 18002773 18002899 -67692855 - AluJo SINE Alu -178 134 11 2031 115 20 3 chr15 18003258 18003562 -67692192 - AluSq SINE Alu 0 313 5 1063 163 0 0 chr15 18003603 18003781 -67691973 - AluSg/x SINE Alu -17 295 118 349 191 0 0 chr15 18003781 18003844 -67691910 - AluS SINE Alu -5 295 233 1338 71 60 0 chr15 18003949 18004132 -67691622 - AluSc SINE Alu -24 285 92 884 112 51 84 chr15 18004422 18004477 -67691277 - L1MA5A LINE L1 -5 6292 6237 2287 90 0 6 chr15 18004477 18004788 -67690966 - AluSc SINE Alu 0 309 1 884 112 51 84 chr15 18004788 18004910 -67690844 - L1MA5A LINE L1 -60 6237 6121 642 187 19 0 chr15 18004928 18005035 -67690719 - FLAM_C SINE Alu -30 113 5 2103 102 30 0 chr15 18005047 18005350 -67690404 - AluSx SINE Alu 0 312 1 3704 212 101 32 chr15 18005360 18006710 -67689044 - L1M2c LINE L1 -4937 1852 92 755 161 8 0 chr15 18006717 18006835 -67688919 + FLAM_A SINE Alu 8 126 -16 574 120 87 0 chr15 18006841 18006933 -67688821 - L1M2c LINE L1 -6687 102 3 814 139 0 19 chr15 18007063 18007221 -67688533 + AluYa5 SINE Alu 127 281 -30 1238 184 0 14 chr15 18007245 18007309 -67688445 + AluSg/x SINE Alu 72 135 -177 2255 95 3 0 chr15 18007309 18007613 -67688141 + AluSx SINE Alu 1 305 -7 1238 184 0 14 chr15 18007613 18007771 -67687983 + AluSg/x SINE Alu 135 291 -21 350 148 40 50 chr15 18007773 18007874 -67687880 - MER104 DNA Tc2 -78 102 3 237 65 0 0 chr15 18008028 18008059 -67687695 + (GGA)n Simple_repeat Simple_repeat 1 31 0 2239 95 10 0 chr15 18008602 18008908 -67686846 - AluSq SINE Alu -4 309 1 518 296 228 16 chr15 18009193 18009504 -67686250 - L1ME1 LINE L1 -306 5860 5484 544 195 130 52 chr15 18009751 18009905 -67685849 - MLT1A1 LTR MaLR -198 167 2 1943 117 10 0 chr15 18009905 18010195 -67685559 - AluSc SINE Alu -16 293 1 1251 122 0 20 chr15 18010200 18010379 -67685375 - AluSg/x SINE Alu 0 312 136 1908 121 10 36 chr15 18010379 18010545 -67685209 - AluSc SINE Alu -10 299 143 2251 84 7 0 chr15 18010545 18010841 -67684913 - AluSp SINE Alu -10 303 6 1908 121 10 36 chr15 18010841 18010981 -67684773 - AluSc SINE Alu -166 143 1 1251 122 0 20 chr15 18010981 18010998 -67684756 - AluSg/x SINE Alu -176 136 120 1308 115 0 0 chr15 18011269 18011461 -67684293 + AluSq SINE Alu 116 307 -6 2021 89 3 17 chr15 18011483 18011774 -67683980 + AluSx SINE Alu 1 287 -25 2182 80 0 23 chr15 18011776 18012075 -67683679 + AluY SINE Alu 1 292 -19 32 0 0 0 chr15 18012075 18012107 -67683647 + AT_rich Low_complexity Low_complexity 1 32 0 1740 163 0 20 chr15 18012163 18012464 -67683290 + AluSx SINE Alu 1 295 -17 2391 54 0 0 chr15 18012788 18013082 -67682672 + AluY SINE Alu 1 294 -17 2208 50 50 0 chr15 18013093 18013374 -67682380 + AluY SINE Alu 1 295 -16 267 330 25 25 chr15 18013407 18013525 -67682229 - MER5B DNA MER1_type -60 118 1 392 83 0 0 chr15 18014018 18014066 -67681688 - FLAM SINE Alu -12 121 74 477 233 21 41 chr15 18014475 18014630 -67681124 + L1ME LINE L1 5514 5662 -504 461 216 39 0 chr15 18014636 18014738 -67681016 + L1 LINE L1 4218 4323 -1823 2125 108 0 0 chr15 18014739 18015034 -67680720 + AluSx SINE Alu 1 295 -17 22 35 0 0 chr15 18015040 18015069 -67680685 + GC_rich Low_complexity Low_complexity 1 29 0 2650 88 31 90 chr15 18015120 18015811 -67679943 + SVA Other Other 393 868 -555 2320 81 0 0 chr15 18015957 18016255 -67679499 + AluSx SINE Alu 1 298 -14 2200 97 3 10 chr15 18016399 18016710 -67679044 - AluY SINE Alu 0 311 3 2010 143 0 3 chr15 18017022 18017330 -67678424 - AluSx SINE Alu -5 307 1 22 56 0 0 chr15 18017448 18017484 -67678270 + AT_rich Low_complexity Low_complexity 1 36 0 2260 91 7 0 chr15 18017559 18017867 -67677887 - AluSx SINE Alu -2 310 1 2122 104 3 3 chr15 18017869 18018166 -67677588 - AluSc SINE Alu -12 297 1 2414 70 0 0 chr15 18018347 18018649 -67677105 - AluY SINE Alu -9 302 1 2146 94 0 0 chr15 18019549 18019835 -67675919 - AluY SINE Alu -15 296 11 1893 151 0 0 chr15 18019982 18020280 -67675474 + AluSx SINE Alu 1 298 -14 807 163 7 0 chr15 18020996 18021131 -67674623 + AluJ SINE Alu 1 136 -176 2429 64 0 10 chr15 18021163 18021477 -67674277 + AluY SINE Alu 1 311 0 1046 188 0 0 chr15 18021488 18021664 -67674090 + AluJ SINE Alu 124 299 -13 2107 95 3 3 chr15 18021675 18021970 -67673784 - AluSx SINE Alu -17 295 1 2319 70 0 13 chr15 18022297 18022611 -67673143 - AluY SINE Alu -1 310 1 1854 150 0 16 chr15 18023111 18023417 -67672337 - AluSx SINE Alu -11 301 1 183 277 181 24 chr15 18023572 18023655 -67672099 - MIR3 SINE MIR -5 203 108 1992 92 43 0 chr15 18023665 18023946 -67671808 + AluY SINE Alu 1 293 -18 265 186 29 71 chr15 18024032 18024102 -67671652 - MIR SINE MIR -72 190 124 2121 120 0 0 chr15 18024184 18024483 -67671271 - AluSx SINE Alu -13 299 1 26 0 0 0 chr15 18025729 18025755 -67669999 + AT_rich Low_complexity Low_complexity 1 26 0 706 151 0 0 chr15 18025766 18025872 -67669882 + AluSx SINE Alu 2 107 -205 1264 108 0 0 chr15 18025922 18026098 -67669656 + AluSx SINE Alu 106 281 -31 216 0 0 0 chr15 18026101 18026125 -67669629 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 694 101 40 0 chr15 18026125 18026224 -67669530 - U6 snRNA snRNA -3 104 2 55 0 0 15 chr15 18026227 18026272 -67669482 + AT_rich Low_complexity Low_complexity 1 46 -19 1797 151 3 0 chr15 18026272 18026564 -67669190 - AluJb SINE Alu -19 293 1 55 0 0 15 chr15 18026564 18026584 -67669170 + AT_rich Low_complexity Low_complexity 46 65 0 2012 56 0 4 chr15 18026608 18026860 -67668894 - AluY SINE Alu -7 304 54 25 0 0 0 chr15 18026875 18026900 -67668854 + AT_rich Low_complexity Low_complexity 1 25 0 749 169 0 0 chr15 18026907 18027025 -67668729 - FLAM_C SINE Alu -15 118 1 685 204 8 0 chr15 18027072 18027204 -67668550 + FLAM_A SINE Alu 6 138 -4 42 20 0 0 chr15 18027246 18027295 -67668459 + AT_rich Low_complexity Low_complexity 1 49 0 1758 185 3 0 chr15 18027297 18027605 -67668149 + AluJo SINE Alu 1 309 -3 2077 86 3 51 chr15 18027670 18027984 -67667770 + AluSx SINE Alu 1 299 -13 1787 159 3 10 chr15 18028050 18028358 -67667396 + AluJo SINE Alu 1 306 -6 841 167 0 0 chr15 18029301 18029433 -67666321 + FLAM_A SINE Alu 1 132 -1 1831 153 0 3 chr15 18029538 18029832 -67665922 + AluJb SINE Alu 1 293 -19 2058 155 0 0 chr15 18029837 18030128 -67665626 + AluJo SINE Alu 2 292 -20 1937 161 19 19 chr15 18030828 18031139 -67664615 + AluJo SINE Alu 1 311 -1 31 26 0 0 chr15 18031206 18031244 -67664510 + AT_rich Low_complexity Low_complexity 1 38 0 2102 117 26 13 chr15 18031466 18031775 -67663979 - AluSq SINE Alu 0 313 1 1399 211 66 18 chr15 18031781 18032189 -67663565 + L1MC4 LINE L1 7107 7538 -504 478 199 122 32 chr15 18032190 18032346 -67663408 - MER3 DNA MER1_type -80 129 7 1963 102 47 66 chr15 18032382 18032418 -67663336 + L1PB2 LINE L1 5755 5790 -361 2290 104 3 0 chr15 18032418 18032717 -67663037 + AluSg SINE Alu 1 300 -10 1963 102 47 66 chr15 18032717 18032907 -67662847 + L1PB2 LINE L1 5790 5974 -177 1746 140 103 0 chr15 18032907 18033179 -67662575 + AluSx SINE Alu 1 300 -12 1963 102 47 66 chr15 18033179 18033315 -67662439 + L1PB2 LINE L1 5974 6111 -40 1873 120 84 0 chr15 18033315 18033589 -67662165 + AluSq SINE Alu 1 297 -16 2358 92 0 10 chr15 18033589 18033892 -67661862 + AluY SINE Alu 1 300 -11 2052 125 28 0 chr15 18033900 18034187 -67661567 + AluSq SINE Alu 1 295 -18 2218 110 3 7 chr15 18034189 18034490 -67661264 + AluSc SINE Alu 1 300 -9 831 116 0 88 chr15 18034495 18034642 -67661112 + FLAM_C SINE Alu 1 134 -9 2128 108 37 0 chr15 18034644 18034940 -67660814 + AluSq SINE Alu 6 312 -1 297 274 94 8 chr15 18035478 18035595 -67660159 - MIR SINE MIR -38 224 98 * 538 214 68 8 chr15 18035592 18035709 -67660045 + L2 LINE L2 3190 3313 0 343 247 0 14 chr15 18035710 18035783 -67659971 - MIR SINE MIR -157 105 34 1921 120 7 7 chr15 18035884 18036160 -67659594 + AluSx SINE Alu 36 311 -1 2162 117 3 3 chr15 18036174 18036473 -67659281 + AluSx SINE Alu 1 299 -13 1740 151 28 11 chr15 18036483 18036768 -67658986 + AluJb SINE Alu 1 290 -22 2591 83 0 0 chr15 18037490 18037803 -67657951 - AluSq SINE Alu 0 313 1 1571 180 24 20 chr15 18038079 18038245 -67657509 - AluSx SINE Alu -7 295 131 2224 118 6 10 chr15 18038245 18038423 -67657331 - AluSx SINE Alu 0 312 134 2420 76 0 13 chr15 18038423 18038727 -67657027 - AluSq SINE Alu -13 300 1 2224 118 6 10 chr15 18038727 18038861 -67656893 - AluSx SINE Alu -178 134 1 2335 87 10 0 chr15 18038868 18039166 -67656588 - AluY SINE Alu -7 304 4 1571 180 24 20 chr15 18039166 18039285 -67656469 - AluSx SINE Alu -176 126 1 867 150 0 8 chr15 18039301 18039434 -67656320 - FLAM_C SINE Alu 0 133 2 240 299 111 17 chr15 18039741 18039858 -67655896 + MIR3 SINE MIR 3 130 -78 2598 170 114 28 chr15 18040150 18040323 -67655431 - L1MB8 LINE L1 -46 6132 5975 1744 183 7 7 chr15 18040323 18040629 -67655125 - AluJo SINE Alu -6 306 1 2598 170 114 28 chr15 18040629 18041043 -67654711 - L1MB8 LINE L1 -203 5975 5481 2033 163 0 13 chr15 18041043 18041356 -67654398 - AluJb SINE Alu -3 309 1 2598 170 114 28 chr15 18041356 18041415 -67654339 - L1MB8 LINE L1 -697 5481 5429 2321 117 0 0 chr15 18041415 18041724 -67654030 - AluSc SINE Alu 0 309 1 333 130 0 0 chr15 18041730 18041784 -67653970 - Alu SINE Alu -2 299 246 2276 91 34 0 chr15 18041816 18042113 -67653641 - AluSc SINE Alu -2 307 1 25 65 0 0 chr15 18042154 18042200 -67653554 + AT_rich Low_complexity Low_complexity 1 46 0 195 121 52 35 chr15 18042376 18042434 -67653320 + A-rich Low_complexity Low_complexity 2 60 0 306 0 0 0 chr15 18042508 18042542 -67653212 + (TG)n Simple_repeat Simple_repeat 2 35 0 205 206 16 16 chr15 18042647 18042710 -67653044 + CT-rich Low_complexity Low_complexity 1 63 0 * 254 60 45 75 chr15 18042697 18042764 -67652990 + (TTCCC)n Simple_repeat Simple_repeat 1 65 0 753 212 95 0 chr15 18042766 18042903 -67652851 - FAM SINE Alu -35 150 1 1970 158 0 0 chr15 18042941 18043226 -67652528 + AluSx SINE Alu 9 293 -19 1467 173 77 112 chr15 18043943 18044596 -67651158 - L1MC5 LINE L1 -76 7885 7256 313 314 36 44 chr15 18044787 18044924 -67650830 - MLT1H LTR MaLR -245 304 169 2204 128 0 0 chr15 18045007 18045312 -67650442 + AluSx SINE Alu 1 305 -7 955 151 0 0 chr15 18045317 18045456 -67650298 + AluSq/x SINE Alu 1 139 -174 2156 139 0 3 chr15 18045457 18045766 -67649988 + AluSq SINE Alu 1 308 -5 1788 135 66 17 chr15 18046067 18046355 -67649399 - AluSx SINE Alu -10 302 1 23 54 0 0 chr15 18046355 18046392 -67649362 + AT_rich Low_complexity Low_complexity 1 37 0 1000 151 0 7 chr15 18046470 18046622 -67649132 - AluJb SINE Alu -161 151 1 2312 91 3 7 chr15 18046629 18046925 -67648829 - AluSx SINE Alu -17 295 1 315 191 15 0 chr15 18046931 18046999 -67648755 - L1MC/D LINE L1 -1988 5820 5752 2693 24 0 0 chr15 18047747 18048038 -67647716 - AluYa5 SINE Alu 0 311 21 282 163 0 0 chr15 18048910 18048953 -67646801 + Alu SINE Alu 1 43 -259 206 32 32 0 chr15 18048953 18048984 -67646770 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2313 97 30 0 chr15 18048989 18049289 -67646465 - AluSg SINE Alu -1 309 1 2342 113 0 0 chr15 18049297 18049608 -67646146 - AluSq SINE Alu -2 311 1 1389 173 10 51 chr15 18049608 18049786 -67645968 - AluJb SINE Alu 0 312 149 2479 67 0 25 chr15 18049786 18050102 -67645652 - AluY SINE Alu -3 308 1 1389 173 10 51 chr15 18050102 18050218 -67645536 - AluJb SINE Alu -163 149 30 2350 71 3 0 chr15 18050226 18050533 -67645221 - AluY SINE Alu 0 308 1 709 211 0 8 chr15 18050544 18050677 -67645077 - FLAM_C SINE Alu -1 132 1 793 483 75 8 chr15 18050679 18050827 -67644927 - AluJo SINE Alu -17 285 148 2130 99 25 0 chr15 18050827 18051109 -67644645 + AluY SINE Alu 15 303 -8 793 483 75 8 chr15 18051109 18051227 -67644527 - AluJo SINE Alu -154 148 1 238 284 98 20 chr15 18052044 18052146 -67643608 + MIR SINE MIR 41 150 -58 * 286 192 39 0 chr15 18052145 18052197 -67643557 - L2 LINE L2 -2 3311 3258 573 224 0 0 chr15 18052197 18052304 -67643450 - FAM SINE Alu -78 107 1 196 294 0 0 chr15 18052423 18052474 -67643280 - MER5B DNA MER1_type -127 51 1 2173 116 10 0 chr15 18054875 18055167 -67640587 + AluSx SINE Alu 2 296 -16 2318 118 0 6 chr15 18055169 18055482 -67640272 + AluSx SINE Alu 1 311 -1 187 289 39 70 chr15 18056407 18056535 -67639219 + MIR SINE MIR 40 163 -99 2145 119 0 10 chr15 18056630 18056932 -67638822 + AluSq SINE Alu 2 300 -13 186 103 0 0 chr15 18058324 18058353 -67637401 + (TG)n Simple_repeat Simple_repeat 1 29 0 2283 101 0 0 chr15 18058848 18059134 -67636620 + AluSx SINE Alu 2 287 -25 1856 170 14 0 chr15 18060925 18061213 -67634541 - AluJb SINE Alu -20 292 1 310 244 70 12 chr15 18062133 18062219 -67633535 + MIR SINE MIR 50 140 -122 769 145 0 0 chr15 18062743 18062860 -67632894 + FLAM_C SINE Alu 1 117 -16 2330 117 0 0 chr15 18062873 18063182 -67632572 - AluSg SINE Alu -1 309 1 522 128 76 7 chr15 18064897 18065187 -67630567 + (CA)n Simple_repeat Simple_repeat 1 310 0 1831 167 0 10 chr15 18065564 18065869 -67629885 - AluJb SINE Alu -6 306 5 1987 147 7 0 chr15 18065926 18066218 -67629536 + AluSx SINE Alu 1 294 -18 1890 169 0 22 chr15 18066277 18066596 -67629158 + AluJo SINE Alu 1 312 0 1616 175 36 26 chr15 18066705 18067014 -67628740 + AluJo SINE Alu 1 312 0 2073 114 17 17 chr15 18067090 18067389 -67628365 + AluSx SINE Alu 1 299 -13 1545 57 0 0 chr15 18067850 18068026 -67627728 - AluY SINE Alu -135 176 1 589 169 16 24 chr15 18068026 18068150 -67627604 - L1MC5 LINE L1 -842 7119 6997 330 130 0 0 chr15 18068177 18068223 -67627531 + FLAM SINE Alu 76 121 -12 1788 135 66 17 chr15 18068376 18068664 -67627090 - AluSx SINE Alu -10 302 1 23 54 0 0 chr15 18068664 18068701 -67627053 + AT_rich Low_complexity Low_complexity 1 37 0 985 153 0 7 chr15 18068779 18068929 -67626825 - AluJb SINE Alu -161 151 3 2312 91 3 7 chr15 18068939 18069235 -67626519 - AluSx SINE Alu -17 295 1 315 191 15 0 chr15 18069241 18069309 -67626445 - L1MC5 LINE L1 -1988 5820 5752 2461 87 0 0 chr15 18070056 18070368 -67625386 - AluSx SINE Alu 0 312 1 1389 173 10 51 chr15 18070368 18070546 -67625208 - AluJb SINE Alu 0 312 149 2479 67 0 25 chr15 18070546 18070862 -67624892 - AluY SINE Alu -3 308 1 1389 173 10 51 chr15 18070862 18070978 -67624776 - AluJb SINE Alu -163 149 30 2350 71 3 0 chr15 18070986 18071293 -67624461 - AluY SINE Alu 0 308 1 736 203 0 8 chr15 18071304 18071437 -67624317 - FLAM_C SINE Alu -1 132 1 1618 178 0 62 chr15 18071439 18071624 -67624130 - AluJo SINE Alu -27 285 125 2233 101 24 0 chr15 18071624 18071920 -67623834 + AluY SINE Alu 1 303 -8 1618 178 0 62 chr15 18071920 18072038 -67623716 - AluJo SINE Alu -187 125 1 238 284 98 20 chr15 18072855 18072957 -67622797 + MIR SINE MIR 41 150 -58 * 286 192 39 0 chr15 18072956 18073008 -67622746 - L2 LINE L2 -2 3311 3258 573 224 0 0 chr15 18073008 18073115 -67622639 - FAM SINE Alu -78 107 1 196 294 0 0 chr15 18073234 18073285 -67622469 - MER5B DNA MER1_type -127 51 1 2173 116 10 0 chr15 18075686 18075978 -67619776 + AluSx SINE Alu 2 296 -16 2206 103 10 3 chr15 18075980 18076281 -67619473 + AluSx SINE Alu 1 303 -9 303 294 184 0 chr15 18076299 18076408 -67619346 + L2 LINE L2 3182 3310 -3 23 68 0 0 chr15 18077137 18077181 -67618573 + GC_rich Low_complexity Low_complexity 1 44 0 269 189 34 54 chr15 18078020 18078168 -67617586 + (TATAA)n Simple_repeat Simple_repeat 3 147 0 21 0 0 0 chr15 18078226 18078247 -67617507 + AT_rich Low_complexity Low_complexity 1 21 0 3127 87 22 19 chr15 18078394 18078458 -67617296 + MER41A LTR ERV1 90 152 -402 1868 122 13 35 chr15 18078458 18078770 -67616984 - AluSx SINE Alu -7 305 1 3127 87 22 19 chr15 18078770 18079167 -67616587 + MER41A LTR ERV1 152 552 -2 337 164 0 0 chr15 18079167 18079222 -67616532 - LTR8 LTR ERV1 0 691 637 14315 230 19 23 chr15 18079257 18084478 -67611276 + HERVI LTR ERV1 2637 7784 -1 1383 224 110 39 chr15 18084481 18084845 -67610909 + LTR10A LTR ERV1 1 410 -199 2283 68 3 20 chr15 18084845 18085139 -67610615 + AluY SINE Alu 21 309 -2 1383 224 110 39 chr15 18085139 18085266 -67610488 + LTR10A LTR ERV1 410 527 -82 4876 68 3 0 chr15 18085266 18085902 -67609852 - LTR8 LTR ERV1 -53 638 1 2282 104 0 3 chr15 18085975 18086274 -67609480 - AluSc SINE Alu -11 298 1 1931 159 3 3 chr15 18086339 18086640 -67609114 - AluJb SINE Alu -11 301 1 3322 150 45 13 chr15 18086701 18086823 -67608931 - MER41B LTR ERV1 0 635 518 2190 139 0 0 chr15 18086823 18087132 -67608622 + AluSx SINE Alu 1 309 -3 3322 150 45 13 chr15 18087132 18087460 -67608294 - MER41B LTR ERV1 -117 518 157 2242 109 3 3 chr15 18087460 18087763 -67607991 - AluSc SINE Alu -6 303 1 3322 150 45 13 chr15 18087763 18087926 -67607828 - MER41B LTR ERV1 -478 157 1 1865 95 8 4 chr15 18087961 18088202 -67607552 - AluSx SINE Alu -59 253 12 1998 133 11 0 chr15 18088218 18088496 -67607258 - AluSg SINE Alu -1 309 29 1768 129 110 4 chr15 18089229 18089501 -67606253 - AluSc SINE Alu -8 301 1 2413 90 7 0 chr15 18089836 18090135 -67605619 - AluSp SINE Alu -12 301 1 2559 67 0 0 chr15 18090143 18090443 -67605311 - AluY SINE Alu -11 300 1 214 350 0 21 chr15 18091168 18091311 -67604443 + GA-rich Low_complexity Low_complexity 5 144 0 336 137 0 0 chr15 18091342 18091393 -67604361 - Alu SINE Alu -12 290 240 2356 89 0 29 chr15 18091699 18092012 -67603742 - AluSg SINE Alu -6 304 1 2069 99 4 0 chr15 18092012 18092275 -67603479 - AluSx SINE Alu -8 304 41 221 266 53 80 chr15 18092578 18092691 -67603063 + MIR3 SINE MIR 15 124 -84 1352 151 123 53 chr15 18092938 18093071 -67602683 + AluJo SINE Alu 1 123 -189 2179 91 3 17 chr15 18093071 18093369 -67602385 + AluSc SINE Alu 1 294 -15 1352 151 123 53 chr15 18093369 18093520 -67602234 + AluJo SINE Alu 123 305 -7 1123 148 16 11 chr15 18093667 18093834 -67601920 - AluSq SINE Alu -10 303 133 1961 103 37 57 chr15 18093834 18094134 -67601620 - AluSg SINE Alu -16 294 1 1123 148 16 11 chr15 18094134 18094148 -67601606 - AluSq SINE Alu -180 133 121 709 229 51 47 chr15 18094176 18094429 -67601325 + L1ME3A LINE L1 5848 6101 -69 259 159 0 0 chr15 18094473 18094517 -67601237 - Alu SINE Alu -258 44 1 2360 96 0 3 chr15 18094519 18094822 -67600932 - AluSx SINE Alu -10 302 1 1716 146 21 11 chr15 18095154 18095435 -67600319 - AluSx SINE Alu -5 307 24 1993 141 0 26 chr15 18095435 18095741 -67600013 + AluSx SINE Alu 1 298 -14 2115 113 37 10 chr15 18095839 18096139 -67599615 - AluSg SINE Alu -2 308 1 367 236 146 51 chr15 18096216 18096312 -67599442 - L1ME4a LINE L1 -7 6114 6029 2557 73 0 0 chr15 18096312 18096614 -67599140 + AluY SINE Alu 2 303 -8 367 236 146 51 chr15 18096614 18096695 -67599059 - L1ME4a LINE L1 -92 6029 5920 2130 129 10 0 chr15 18096718 18097027 -67598727 + AluSx SINE Alu 1 312 0 1243 146 16 0 chr15 18098586 18098771 -67596983 + AluJb SINE Alu 5 192 -120 1994 91 0 16 chr15 18098772 18099076 -67596678 + AluSp SINE Alu 35 334 0 699 135 0 0 chr15 18099078 18099182 -67596572 - FLAM_A SINE Alu -21 121 18 532 222 35 53 chr15 18099186 18099357 -67596397 - MIR SINE MIR -67 195 28 1546 186 16 50 chr15 18099404 18099726 -67596028 + AluJo SINE Alu 1 311 -1 1091 88 0 7 chr15 18099738 18099874 -67595880 + AluSq/x SINE Alu 1 135 -178 2253 118 3 0 chr15 18099874 18100170 -67595584 + AluSp SINE Alu 1 297 -16 2113 109 38 0 chr15 18100242 18100535 -67595219 - AluSp SINE Alu -9 304 1 2123 134 3 0 chr15 18101349 18101648 -67594106 + AluJb SINE Alu 1 300 -12 617 279 16 16 chr15 18101739 18101929 -67593825 + MIR SINE MIR 10 199 -63 25 31 0 0 chr15 18102182 18102214 -67593540 + AT_rich Low_complexity Low_complexity 1 32 0 1493 150 6 120 chr15 18104158 18104492 -67591262 - AluJo SINE Alu -6 296 1 1690 189 21 7 chr15 18106594 18106879 -67588875 - AluJo SINE Alu -23 289 1 1738 151 19 55 chr15 18106879 18107191 -67588563 - AluJo SINE Alu -11 301 1 556 240 127 58 chr15 18108363 18108606 -67587148 + L2 LINE L2 2802 3059 -254 387 314 86 7 chr15 18109154 18109294 -67586460 + L2 LINE L2 2904 3054 -218 2148 249 99 33 chr15 18109438 18110018 -67585736 - MER115 DNA AcHobo 0 693 66 1980 170 0 19 chr15 18110018 18110336 -67585418 - AluJb SINE Alu 0 312 1 2148 249 99 33 chr15 18110336 18110390 -67585364 - MER115 DNA AcHobo -627 66 17 1865 139 6 65 chr15 18110640 18110964 -67584790 + AluSx SINE Alu 3 307 -5 589 256 24 76 chr15 18111185 18111435 -67584319 + AluSg/x SINE Alu 71 307 -5 213 39 0 0 chr15 18112305 18112331 -67583423 + (TCCC)n Simple_repeat Simple_repeat 1 26 0 769 97 0 83 chr15 18114491 18114636 -67581118 - FLAM_A SINE Alu 0 133 1 180 77 0 0 chr15 18116386 18116412 -67579342 + (CG)n Simple_repeat Simple_repeat 2 27 0 * 363 44 0 0 chr15 18116411 18116456 -67579298 + (CA)n Simple_repeat Simple_repeat 1 45 0 24 0 0 0 chr15 18119018 18119042 -67576712 + AT_rich Low_complexity Low_complexity 1 24 0 246 147 59 0 chr15 18119227 18119295 -67576459 + L1M4 LINE L1 4964 5035 -1111 2248 137 0 0 chr15 18119575 18120017 -67575737 - AluSq SINE Alu 0 442 1 806 71 0 0 chr15 18120597 18120696 -67575058 - AluSg/x SINE Alu -6 306 208 295 116 0 11 chr15 18120696 18120751 -67575003 - Alu SINE Alu -261 40 1 2296 95 0 14 chr15 18120782 18121078 -67574676 + AluSg SINE Alu 17 308 -2 213 139 0 0 chr15 18121358 18121401 -67574353 + (TG)n Simple_repeat Simple_repeat 1 43 0 2269 127 0 0 chr15 18122010 18122318 -67573436 + AluJb SINE Alu 3 310 -2 573 221 0 0 chr15 18122740 18122885 -67572869 + (TG)n Simple_repeat Simple_repeat 2 146 0 2314 107 0 0 chr15 18123005 18123295 -67572459 - AluSg SINE Alu -20 290 1 2300 111 7 0 chr15 18123318 18123624 -67572130 - AluSg SINE Alu -1 309 2 316 217 47 66 chr15 18123624 18123730 -67572024 - L1MC5 LINE L1 -48 7913 7810 1220 165 0 5 chr15 18123815 18124021 -67571733 - AluY SINE Alu -2 309 105 2283 98 0 10 chr15 18124645 18124941 -67570813 + AluSg SINE Alu 16 308 -2 213 139 0 0 chr15 18125221 18125264 -67570490 + (TG)n Simple_repeat Simple_repeat 1 43 0 2214 134 0 0 chr15 18125873 18126179 -67569575 + AluJb SINE Alu 3 308 -4 306 307 0 0 chr15 18126778 18126975 -67568779 + T-rich Low_complexity Low_complexity 1 197 0 358 368 18 0 chr15 18126975 18127089 -67568665 + C-rich Low_complexity Low_complexity 4 119 0 363 308 0 0 chr15 18127115 18127287 -67568467 + T-rich Low_complexity Low_complexity 1 172 0 573 221 0 0 chr15 18127730 18127875 -67567879 + (TG)n Simple_repeat Simple_repeat 2 146 0 2314 107 0 0 chr15 18127995 18128285 -67567469 - AluSg SINE Alu -20 290 1 2300 111 7 0 chr15 18128308 18128614 -67567140 - AluSg SINE Alu -1 309 2 316 217 47 66 chr15 18128614 18128720 -67567034 - L1MC5 LINE L1 -48 7913 7810 1753 173 3 10 chr15 18128805 18129117 -67566637 - AluY SINE Alu -1 310 1 227 256 64 0 chr15 18129671 18129749 -67566005 - L1MC5 LINE L1 -178 7783 7701 2517 64 0 0 chr15 18129770 18130065 -67565689 + AluY SINE Alu 1 295 -16 2444 170 61 71 chr15 18130072 18130219 -67565535 + L1MC3 LINE L1 6573 6720 -1065 612 188 0 8 chr15 18130219 18130369 -67565385 - FLAM_C SINE Alu 0 149 1 2444 170 61 71 chr15 18130369 18130605 -67565149 + L1MC3 LINE L1 6720 6957 -828 2043 148 3 16 chr15 18130605 18130915 -67564839 + AluSx SINE Alu 1 306 -6 2444 170 61 71 chr15 18130915 18130978 -67564776 + L1MC3 LINE L1 6957 7019 -766 2118 115 7 7 chr15 18130978 18131273 -67564481 + AluSx SINE Alu 1 295 -17 2444 170 61 71 chr15 18131273 18131654 -67564100 + L1MC3 LINE L1 7019 7402 -383 2059 133 36 7 chr15 18131654 18131956 -67563798 - AluSx SINE Alu -1 311 1 2444 170 61 71 chr15 18131956 18132092 -67563662 + L1MC3 LINE L1 7402 7538 -247 1818 164 7 17 chr15 18132092 18132390 -67563364 + AluJo SINE Alu 1 295 -17 2084 142 0 0 chr15 18132390 18132677 -67563077 + AluSx SINE Alu 1 290 -22 210 37 0 0 chr15 18132677 18132704 -67563050 + (CATA)n Simple_repeat Simple_repeat 2 28 0 2444 170 61 71 chr15 18132712 18132750 -67563004 + L1MC3 LINE L1 7536 7561 -224 2329 36 47 4 chr15 18132754 18133032 -67562722 + AluY SINE Alu 1 290 -21 2288 108 0 0 chr15 18133042 18133337 -67562417 + AluSq SINE Alu 2 296 -17 1276 199 64 29 chr15 18133337 18133618 -67562136 - AluJo SINE Alu -21 291 1 1194 161 0 11 chr15 18133647 18133833 -67561921 + AluJb SINE Alu 118 301 -11 2234 128 0 13 chr15 18133947 18134081 -67561673 + AluSx SINE Alu 2 136 -176 2202 112 3 16 chr15 18134081 18134385 -67561369 + AluSq SINE Alu 1 300 -13 2234 128 0 13 chr15 18134385 18134563 -67561191 + AluSx SINE Alu 136 310 -2 1639 181 10 34 chr15 18134578 18134876 -67560878 + AluJb SINE Alu 6 296 -16 279 217 33 0 chr15 18135015 18135075 -67560679 - MER5A DNA MER1_type -5 184 123 925 133 70 0 chr15 18135075 18135218 -67560536 + AluSx SINE Alu 1 153 -159 352 197 84 0 chr15 18135438 18135509 -67560245 + MER5A DNA MER1_type 26 102 -87 2377 85 0 0 chr15 18135509 18135804 -67559950 + AluY SINE Alu 1 295 -16 2226 95 18 0 chr15 18135816 18136100 -67559654 + AluSq SINE Alu 1 289 -24 23 33 0 0 chr15 18136167 18136197 -67559557 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr15 18136244 18136266 -67559488 + AT_rich Low_complexity Low_complexity 1 22 0 1795 123 0 0 chr15 18136568 18136803 -67558951 - AluSx SINE Alu -77 235 1 340 185 31 0 chr15 18136803 18136868 -67558886 + MER5A DNA MER1_type 123 189 0 257 324 43 22 chr15 18136893 18137032 -67558722 - L2 LINE L2 -2 3311 3170 2492 70 3 0 chr15 18137600 18137902 -67557852 + AluSx SINE Alu 1 303 -9 236 196 0 71 chr15 18138534 18138590 -67557164 - AluSg/x SINE Alu -134 166 115 468 224 31 118 chr15 18138692 18138837 -67556917 - MIR SINE MIR -15 247 132 2565 58 0 10 chr15 18138837 18139148 -67556606 + AluSq SINE Alu 1 308 -5 468 224 31 118 chr15 18139148 18139256 -67556498 - MIR SINE MIR -130 132 16 650 227 130 24 chr15 18139537 18139744 -67556010 - MIR SINE MIR 0 262 34 197 307 40 40 chr15 18140221 18140322 -67555432 + L2 LINE L2 3198 3298 -15 2361 79 0 7 chr15 18140492 18140784 -67554970 - AluY SINE Alu -21 290 1 2076 127 13 10 chr15 18140908 18141208 -67554546 - AluSx SINE Alu -11 301 1 1145 185 14 5 chr15 18141283 18141499 -67554255 + MER20 DNA MER1_type 1 218 -1 761 230 58 58 chr15 18141603 18141748 -67554006 + MIR SINE MIR 2 149 -113 2518 64 3 0 chr15 18141748 18142045 -67553709 + AluSp SINE Alu 1 298 -15 761 230 58 58 chr15 18142045 18142156 -67553598 + MIR SINE MIR 148 258 -4 27 0 0 0 chr15 18142290 18142317 -67553437 + AT_rich Low_complexity Low_complexity 1 27 0 433 226 10 0 chr15 18142739 18142841 -67552913 - AluSg SINE Alu -206 104 2 754 168 85 93 chr15 18142842 18142868 -67552886 - L1ME1 LINE L1 -32 6134 6109 1685 170 7 47 chr15 18142868 18143006 -67552748 + AluJb SINE Alu 1 143 -169 2456 74 7 10 chr15 18143006 18143316 -67552438 + AluSq SINE Alu 5 313 0 1685 170 7 47 chr15 18143316 18143477 -67552277 + AluJb SINE Alu 143 288 -24 754 168 85 93 chr15 18143477 18143810 -67551944 - L1ME1 LINE L1 -57 6109 5802 455 190 63 28 chr15 18143823 18143965 -67551789 + L1MD3 LINE L1 7841 7987 -8 523 189 21 0 chr15 18144230 18144325 -67551429 + FRAM SINE Alu 49 145 -31 216 0 0 0 chr15 18144328 18144352 -67551402 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2367 68 0 0 chr15 18144355 18144634 -67551120 - AluY SINE Alu -32 279 1 260 202 0 34 chr15 18144634 18144695 -67551059 - L1M4 LINE L1 -1761 4385 4326 2400 93 0 3 chr15 18144695 18144995 -67550759 - AluSq SINE Alu -14 299 1 260 202 0 34 chr15 18144995 18145022 -67550732 - L1M4 LINE L1 -1820 4326 4300 244 206 87 65 chr15 18145050 18145142 -67550612 + MER102a DNA MER1_type 221 314 -16 393 149 0 0 chr15 18145779 18145846 -67549908 - MIR SINE MIR -117 145 79 582 228 35 108 chr15 18146576 18146808 -67548946 - MIR SINE MIR -37 225 11 209 151 0 94 chr15 18147929 18147982 -67547772 - MIR SINE MIR -12 250 203 1275 146 8 79 chr15 18147986 18148158 -67547596 - AluJb SINE Alu -5 307 124 2318 116 0 0 chr15 18148158 18148459 -67547295 - AluSp SINE Alu -12 301 1 2156 93 47 0 chr15 18148459 18148737 -67547017 - AluSq SINE Alu -17 296 6 2127 86 26 40 chr15 18148741 18149043 -67546711 - AluSq SINE Alu -15 298 1 1275 146 8 79 chr15 18149043 18149104 -67546650 - AluJb SINE Alu -190 122 85 2029 148 13 3 chr15 18149104 18149407 -67546347 - AluSx SINE Alu -6 306 1 367 233 57 57 chr15 18149407 18149566 -67546188 - MIR SINE MIR -56 206 48 1992 125 4 7 chr15 18149611 18149892 -67545862 - AluSx SINE Alu -6 306 27 206 228 35 53 chr15 18149941 18150055 -67545699 + (CTATA)n Simple_repeat Simple_repeat 5 116 0 1681 154 3 55 chr15 18150161 18150294 -67545460 + AluJo SINE Alu 11 122 -190 2392 88 0 3 chr15 18150294 18150591 -67545163 + AluSc SINE Alu 1 296 -13 1681 154 3 55 chr15 18150591 18150749 -67545005 + AluJo SINE Alu 122 287 -25 217 188 0 21 chr15 18150749 18150759 -67544995 + (TA)n Simple_repeat Simple_repeat 2 11 -37 1655 119 0 0 chr15 18150759 18150986 -67544768 + AluSg/x SINE Alu 86 312 0 217 188 0 21 chr15 18150986 18151023 -67544731 + (TA)n Simple_repeat Simple_repeat 11 48 0 274 154 15 15 chr15 18152313 18152378 -67543376 + CT-rich Low_complexity Low_complexity 6 70 0 2166 95 4 0 chr15 18153260 18153533 -67542221 - AluSc SINE Alu -18 291 18 1715 157 10 34 chr15 18156052 18156346 -67539408 + AluJb SINE Alu 1 287 -25 2086 144 3 0 chr15 18156356 18156648 -67539106 + AluSx SINE Alu 1 293 -19 2373 97 0 7 chr15 18156651 18156961 -67538793 + AluSg1 SINE Alu 1 308 -1 2239 133 0 0 chr15 18156968 18157277 -67538477 + AluSg SINE Alu 1 309 -1 24 32 0 0 chr15 18157277 18157308 -67538446 + AT_rich Low_complexity Low_complexity 1 31 0 2159 90 20 27 chr15 18157831 18158131 -67537623 + AluSg SINE Alu 1 298 -12 2470 71 3 0 chr15 18159919 18160216 -67535538 + AluSp SINE Alu 5 302 -11 202 304 78 49 chr15 18160983 18161085 -67534669 + MIR SINE MIR 102 206 -56 443 267 61 24 chr15 18161115 18161280 -67534474 - MIR SINE MIR -2 260 90 2226 124 3 0 chr15 18162371 18162670 -67533084 + AluSx SINE Alu 1 300 -12 2347 86 7 16 chr15 18163095 18163399 -67532355 + AluSq SINE Alu 2 302 -11 1569 179 17 14 chr15 18163414 18163705 -67532049 + AluJo SINE Alu 1 292 -20 1177 122 0 53 chr15 18163722 18163911 -67531843 - AluSg/x SINE Alu 0 310 132 2129 119 14 0 chr15 18163911 18164204 -67531550 - AluSx SINE Alu -15 297 1 659 196 0 0 chr15 18165589 18165701 -67530053 + FLAM_A SINE Alu 1 112 -30 516 111 0 0 chr15 18165702 18165783 -67529971 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 2041 134 11 3 chr15 18165783 18166067 -67529687 - AluJb SINE Alu -26 286 1 2319 92 0 29 chr15 18166268 18166583 -67529171 - AluSg SINE Alu -4 306 1 1935 175 0 3 chr15 18166583 18166886 -67528868 - AluSx SINE Alu -10 302 1 823 186 35 17 chr15 18166926 18167098 -67528656 - MER5A DNA MER1_type 0 189 15 2357 86 0 41 chr15 18167199 18167514 -67528240 - AluSg1 SINE Alu -7 302 1 2203 116 10 0 chr15 18167651 18167953 -67527801 - AluSp SINE Alu -7 306 2 25 65 0 0 chr15 18170521 18170567 -67525187 + GC_rich Low_complexity Low_complexity 1 46 0 2459 91 0 0 chr15 18171412 18171719 -67524035 + AluSg1 SINE Alu 1 307 -2 1997 92 89 0 chr15 18171914 18172195 -67523559 + AluSc SINE Alu 3 308 -1 2155 106 25 0 chr15 18172775 18173058 -67522696 - AluSx SINE Alu -22 290 1 2139 56 0 4 chr15 18173102 18173354 -67522400 - AluY SINE Alu -7 304 54 25 0 0 0 chr15 18173369 18173394 -67522360 + AT_rich Low_complexity Low_complexity 1 25 0 718 169 0 0 chr15 18173401 18173519 -67522235 - FLAM_C SINE Alu -15 118 1 418 274 121 88 chr15 18173705 18174126 -67521628 - L1MEc LINE L1 -2841 3541 831 1072 97 0 0 chr15 18174306 18174440 -67521314 - AluSq/x SINE Alu -178 134 1 23 0 0 0 chr15 18174615 18174638 -67521116 + AT_rich Low_complexity Low_complexity 1 23 0 324 291 6 109 chr15 18175040 18175215 -67520539 + HAL1 LINE L1 1046 1202 -1305 2329 116 0 3 chr15 18175411 18175722 -67520032 - AluSx SINE Alu -2 310 1 920 198 0 0 chr15 18176099 18176261 -67519493 - FAM SINE Alu -13 162 1 2320 121 0 0 chr15 18176488 18176793 -67518961 - AluSg SINE Alu -5 305 1 1242 133 38 5 chr15 18176880 18177090 -67518664 - AluSq SINE Alu -12 301 85 506 194 22 15 chr15 18177918 18178052 -67517702 - AluY SINE Alu -175 136 2 2347 52 10 3 chr15 18178053 18178341 -67517413 - AluY SINE Alu -18 293 4 434 234 22 87 chr15 18178348 18178368 -67517386 - L1MA10 LINE L1 -1 6333 6314 733 222 23 69 chr15 18178368 18178479 -67517275 - L1ME2 LINE L1 -9 6155 6057 1930 165 10 0 chr15 18178479 18178770 -67516984 - AluJb SINE Alu -18 294 1 733 222 23 69 chr15 18178770 18178874 -67516880 - L1ME2 LINE L1 -107 6057 5950 567 278 30 10 chr15 18178949 18179147 -67516607 + AluSg1 SINE Alu 2 203 -106 279 326 106 15 chr15 18179625 18179757 -67515997 - L2 LINE L2 -4 3268 3125 189 0 0 0 chr15 18179761 18179782 -67515972 + (CAATA)n Simple_repeat Simple_repeat 4 24 0 1969 165 0 0 chr15 18180023 18180320 -67515434 + AluSg SINE Alu 1 297 -13 1692 130 19 8 chr15 18180672 18180934 -67514820 + AluSg SINE Alu 46 310 0 638 256 207 15 chr15 18180934 18181335 -67514419 - MLT1H1 LTR MaLR -64 531 1 1334 157 13 135 chr15 18181336 18181458 -67514296 - L1ME2 LINE L1 -207 5957 5822 789 113 0 70 chr15 18181458 18181600 -67514154 - FLAM_C SINE Alu -1 132 1 1334 157 13 135 chr15 18181600 18181808 -67513946 - L1ME2 LINE L1 -342 5822 5696 1840 171 3 10 chr15 18181808 18182106 -67513648 + AluJo SINE Alu 2 297 -15 1334 157 13 135 chr15 18182106 18182232 -67513522 - L1ME2 LINE L1 -468 5696 5556 2100 130 13 3 chr15 18182233 18182533 -67513221 - AluSq SINE Alu -10 303 1 1135 209 0 5 chr15 18182543 18182749 -67513005 - AluJo SINE Alu -20 292 88 1198 162 24 40 chr15 18182753 18182835 -67512919 - L1ME2 LINE L1 -608 5562 5480 2267 113 10 0 chr15 18182835 18183141 -67512613 - AluSq SINE Alu -4 309 6 1198 162 24 40 chr15 18183141 18183305 -67512449 - L1ME2 LINE L1 -690 5480 5320 222 98 122 0 chr15 18184033 18184074 -67511680 + MIR SINE MIR 10 55 -207 2277 110 0 0 chr15 18184079 18184378 -67511376 - AluY SINE Alu -12 299 1 526 88 0 0 chr15 18184402 18184470 -67511284 - U3 snRNA snRNA -149 68 1 2451 90 3 0 chr15 18184531 18184842 -67510912 - AluSp SINE Alu -1 312 1 1237 223 92 3 chr15 18184905 18185045 -67510709 + L1M4 LINE L1 4517 4643 -1503 1509 176 23 12 chr15 18185045 18185301 -67510453 + AluJb SINE Alu 1 259 -53 1237 223 92 3 chr15 18185301 18185488 -67510266 + L1M4 LINE L1 4643 4873 -1273 1426 227 145 39 chr15 18185563 18186026 -67509728 + MLT1F LTR MaLR 31 542 0 477 214 36 0 chr15 18186026 18186138 -67509616 + L1M4 LINE L1 4867 4982 -1164 680 62 0 31 chr15 18186138 18186290 -67509464 - AluY SINE Alu 0 311 197 1278 159 12 123 chr15 18187021 18187172 -67508582 + AluJb SINE Alu 1 167 -135 369 0 0 0 chr15 18187172 18187213 -67508541 + (CA)n Simple_repeat Simple_repeat 2 42 0 2342 88 7 0 chr15 18187213 18187507 -67508247 + AluSg SINE Alu 1 296 -14 1278 159 12 123 chr15 18187507 18187694 -67508060 + AluJb SINE Alu 165 302 0 1361 108 4 82 chr15 18187727 18187959 -67507795 - AluJb SINE Alu -13 299 86 2052 142 0 3 chr15 18187968 18188277 -67507477 - AluSx SINE Alu -4 308 1 892 198 0 0 chr15 18188286 18188468 -67507286 - AluSg/x SINE Alu 0 312 131 1348 118 28 19 chr15 18189076 18189287 -67506467 + AluSq SINE Alu 94 306 -7 213 367 44 0 chr15 18189389 18189479 -67506275 - MER5A DNA MER1_type 0 189 96 21 57 0 0 chr15 18191726 18191761 -67503993 + AT_rich Low_complexity Low_complexity 1 35 0 440 200 36 18 chr15 18192385 18192495 -67503259 - MIR SINE MIR -44 218 107 2058 86 68 0 chr15 18192842 18193122 -67502632 + AluSp SINE Alu 2 300 -13 23 0 0 0 chr15 18193130 18193153 -67502601 + AT_rich Low_complexity Low_complexity 1 23 0 1957 128 31 0 chr15 18193153 18193442 -67502312 - AluSq SINE Alu -14 299 2 909 187 26 0 chr15 18193450 18193605 -67502149 - AluJo SINE Alu -16 296 138 1400 99 0 52 chr15 18193617 18193828 -67501926 - AluSg/x SINE Alu -6 304 105 1138 111 17 39 chr15 18193828 18194009 -67501745 - AluSq SINE Alu -136 177 1 724 188 0 0 chr15 18194014 18194147 -67501607 - AluJo SINE Alu -169 133 1 23 0 0 0 chr15 18194148 18194171 -67501583 + AT_rich Low_complexity Low_complexity 1 23 0 1706 180 7 3 chr15 18194239 18194533 -67501221 + AluJo SINE Alu 1 295 -17 239 282 64 13 chr15 18194672 18194750 -67501004 - L2 LINE L2 -4 3309 3228 1381 156 19 0 chr15 18194886 18195124 -67500630 + AluJo SINE Alu 77 318 0 1301 129 203 21 chr15 18195276 18195562 -67500192 + MER44D DNA MER2_type 2 609 0 642 206 0 0 chr15 18195656 18195782 -67499972 - FLAM_A SINE Alu -3 139 14 2332 96 0 13 chr15 18195798 18196101 -67499653 - AluSp SINE Alu -14 299 1 1893 150 34 57 chr15 18196102 18196245 -67499509 - L1MC3 LINE L1 -7 7778 7633 1532 131 18 134 chr15 18196245 18196581 -67499173 - AluSx SINE Alu -5 297 1 1893 150 34 57 chr15 18196581 18196844 -67498910 - L1MC3 LINE L1 -152 7633 7381 325 82 41 0 chr15 18196982 18197031 -67498723 - L1MC3 LINE L1 -492 7293 7243 1503 264 138 39 chr15 18197451 18197576 -67498178 - L2 LINE L2 -11 3302 3191 2219 100 20 7 chr15 18197576 18197876 -67497878 + AluSx SINE Alu 1 304 -8 1503 264 138 39 chr15 18197876 18198345 -67497409 - L2 LINE L2 -122 3191 2770 1650 101 134 11 chr15 18198345 18198613 -67497141 + AluY SINE Alu 1 301 0 1503 264 138 39 chr15 18198613 18199018 -67496736 - L2 LINE L2 -543 2770 2193 818 234 9 35 chr15 18199018 18199245 -67496509 + AluJb SINE Alu 85 305 -7 971 125 0 0 chr15 18199683 18199819 -67495935 - AluSg/x SINE Alu -13 299 164 1073 139 0 0 chr15 18199900 18200051 -67495703 - AluSq/x SINE Alu -161 151 1 860 269 142 12 chr15 18200114 18200639 -67495115 + L2 LINE L2 2709 3313 0 433 237 43 0 chr15 18200647 18200740 -67495014 - MIR SINE MIR -87 175 79 183 80 0 0 chr15 18200828 18200853 -67494901 + (TATG)n Simple_repeat Simple_repeat 4 28 0 394 206 49 0 chr15 18201383 18201485 -67494269 + AluSq/x SINE Alu 5 111 -192 535 156 33 0 chr15 18201588 18201678 -67494076 + Tigger3(Golem) DNA MER2_type 148 240 -2789 231 155 87 68 chr15 18201718 18201821 -67493933 + Tigger3(Golem) DNA MER2_type 203 307 -2722 746 176 0 0 chr15 18201854 18201973 -67493781 - FRAM SINE Alu -20 156 38 1186 160 0 10 chr15 18201990 18202218 -67493536 - AluSg/x SINE Alu 0 308 83 434 121 15 0 chr15 18202218 18202284 -67493470 - AluSg/x SINE Alu -62 247 181 355 102 0 51 chr15 18202285 18202344 -67493410 - AluY SINE Alu -169 132 77 1318 150 5 9 chr15 18202345 18202558 -67493196 - AluSx SINE Alu -100 212 1 521 151 35 12 chr15 18202565 18202651 -67493103 - MER2 DNA MER2_type -257 88 1 181 281 58 50 chr15 18202798 18202919 -67492835 - L2 LINE L2 -2941 373 252 1974 102 49 11 chr15 18203458 18203742 -67492012 - AluSx SINE Alu -17 295 1 2220 108 0 3 chr15 18203742 18204039 -67491715 - AluSx SINE Alu -3 309 14 22 0 0 0 chr15 18204053 18204075 -67491679 + AT_rich Low_complexity Low_complexity 1 22 0 1923 144 7 20 chr15 18204082 18204381 -67491373 - AluJo SINE Alu -17 295 1 599 230 20 7 chr15 18204386 18204538 -67491216 + MIR SINE MIR 67 220 -42 189 107 0 0 chr15 18204682 18204710 -67491044 + (T)n Simple_repeat Simple_repeat 1 28 0 274 287 0 23 chr15 18204831 18204918 -67490836 + CT-rich Low_complexity Low_complexity 3 87 0 2396 84 0 13 chr15 18205167 18205477 -67490277 - AluY SINE Alu -5 306 1 2232 110 3 0 chr15 18206156 18206446 -67489308 - AluSg SINE Alu -19 291 1 3291 183 38 8 chr15 18206455 18207117 -67488637 - L1MB8 LINE L1 -1 6177 5496 2239 117 0 0 chr15 18207117 18207417 -67488337 - AluSc SINE Alu -9 300 1 434 281 66 29 chr15 18207438 18207680 -67488074 - AluJo SINE Alu -24 288 38 431 119 0 0 chr15 18208438 18208497 -67487257 - AluS SINE Alu -249 60 2 557 247 30 12 chr15 18208497 18208663 -67487091 - L1MB8 LINE L1 -1036 5110 4942 256 170 38 0 chr15 18208687 18208740 -67487014 - L1MB8 LINE L1 -1186 4960 4906 841 134 0 15 chr15 18208867 18209001 -67486753 + FLAM_C SINE Alu 11 142 -1 1940 125 30 23 chr15 18209004 18209307 -67486447 + AluSx SINE Alu 1 305 -7 311 336 30 15 chr15 18209344 18209475 -67486279 - MIR3 SINE MIR -9 199 67 4380 173 50 20 chr15 18209488 18209938 -67485816 - Cheshire DNA MER1_type 0 2420 1985 2095 112 21 0 chr15 18209938 18210224 -67485530 + AluSx SINE Alu 1 292 -20 4380 173 50 20 chr15 18210224 18210741 -67485013 - Cheshire DNA MER1_type -435 1985 1424 890 211 14 14 chr15 18210747 18210965 -67484789 - Cheshire DNA MER1_type -1569 851 634 1744 117 95 11 chr15 18210970 18211244 -67484510 - AluSx SINE Alu -6 306 10 680 121 0 0 chr15 18211247 18211338 -67484416 + AluSg/x SINE Alu 190 280 -32 316 229 12 24 chr15 18211357 18211440 -67484314 + Tigger5 DNA MER2_type 2242 2323 0 235 286 14 14 chr15 18211733 18211803 -67483951 - Charlie4 DNA MER1_type -4 1957 1888 245 314 86 19 chr15 18212739 18212844 -67482910 - L2 LINE L2 -4 3268 3157 608 219 104 26 chr15 18212846 18213038 -67482716 + MIR SINE MIR 5 211 -51 769 303 121 26 chr15 18213049 18213659 -67482095 - L2 LINE L2 -109 3204 2527 2263 102 7 3 chr15 18213732 18214025 -67481729 + AluSg1 SINE Alu 1 294 -15 2189 99 0 3 chr15 18214299 18214611 -67481143 - AluSx SINE Alu 0 311 1 1201 180 13 42 chr15 18214761 18215000 -67480754 - AluJo SINE Alu -52 260 29 205 247 136 12 chr15 18215149 18215230 -67480524 + L2 LINE L2 3214 3304 -9 2306 103 0 6 chr15 18215441 18215753 -67480001 + AluSx SINE Alu 1 310 -2 1289 131 5 40 chr15 18215874 18216096 -67479658 + AluJo SINE Alu 95 308 -4 815 196 89 13 chr15 18217012 18217170 -67478584 - AluJo SINE Alu -142 170 1 1219 149 128 79 chr15 18217379 18217521 -67478233 + MER2 DNA MER2_type 1 135 -209 2125 127 19 7 chr15 18217521 18217829 -67477925 - AluSx SINE Alu 0 312 1 1219 149 128 79 chr15 18217829 18218014 -67477740 + MER2 DNA MER2_type 135 344 0 237 265 118 0 chr15 18218320 18218388 -67477366 - L2 LINE L2 0 3272 3197 183 347 84 0 chr15 18218497 18218592 -67477162 - L2 LINE L2 -192 3080 2978 328 40 40 0 chr15 18218675 18218725 -67477029 + (TC)n Simple_repeat Simple_repeat 1 52 0 1411 164 0 68 chr15 18218725 18219005 -67476749 - AluJo SINE Alu -39 273 13 1682 146 13 62 chr15 18219127 18219436 -67476318 - AluJo SINE Alu -18 294 1 2344 105 0 6 chr15 18219698 18220012 -67475742 - AluSx SINE Alu 0 312 1 183 42 0 0 chr15 18220027 18220051 -67475703 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1682 126 95 4 chr15 18225829 18226127 -67469627 - AluSx SINE Alu 0 322 1 1559 160 94 25 chr15 18227749 18228024 -67467730 - AluJb SINE Alu -18 294 1 778 120 58 10 chr15 18228044 18228235 -67467519 - L1MB7 LINE L1 -16 6168 5894 1149 188 96 32 chr15 18228269 18228551 -67467203 - AluJo SINE Alu -2 300 1 755 173 20 20 chr15 18228807 18228957 -67466797 + L1PA16 LINE L1 6015 6164 -2 590 259 135 82 chr15 18228971 18229558 -67466196 - L1MC4a LINE L1 -1893 5915 5298 2120 122 3 0 chr15 18229604 18229898 -67465856 - AluSx SINE Alu -13 299 5 817 176 0 0 chr15 18229911 18230036 -67465718 - AluSq/x SINE Alu -187 125 1 2046 155 0 0 chr15 18230155 18230459 -67465295 - AluSx SINE Alu -7 305 2 344 163 0 2 chr15 18232565 18232622 -67463132 + MER2 DNA MER2_type 6 61 -178 851 189 184 0 chr15 18232647 18232848 -67462906 + L1MA9 LINE L1 5815 6052 -260 2495 52 0 3 chr15 18232872 18233162 -67462592 - AluY SINE Alu -22 289 1 420 235 0 0 chr15 18233412 18233493 -67462261 - MER2 DNA MER2_type -264 81 1 2358 93 0 16 chr15 18233673 18233985 -67461769 - AluSx SINE Alu -5 307 1 1673 203 3 3 chr15 18234515 18234811 -67460943 - AluJb SINE Alu -16 296 1 458 207 11 0 chr15 18235099 18235186 -67460568 + MER58 DNA MER1_type 128 2420 0 225 0 0 0 chr15 18235223 18235248 -67460506 + (CA)n Simple_repeat Simple_repeat 1 25 0 2253 135 0 0 chr15 18235562 18235874 -67459880 - AluSx SINE Alu 0 312 1 2343 109 0 0 chr15 18235886 18236189 -67459565 - AluSq SINE Alu 0 313 11 2065 130 7 0 chr15 18236262 18236546 -67459208 - AluSx SINE Alu -26 286 1 1972 163 3 7 chr15 18236548 18236854 -67458900 - AluSx SINE Alu -7 305 1 2314 107 0 3 chr15 18236866 18237174 -67458580 - AluSc SINE Alu -2 307 1 562 277 45 6 chr15 18237393 18237570 -67458184 - L1ME LINE L1 -400 5762 5579 553 264 62 44 chr15 18237571 18237798 -67457956 + L1M4 LINE L1 4797 5027 -1119 227 220 73 18 chr15 18237856 18237965 -67457789 - L1MB8 LINE L1 0 6178 6064 460 266 79 14 chr15 18238649 18238788 -67456966 - L2 LINE L2 -4 3268 3121 387 130 0 14 chr15 18238890 18238959 -67456795 + L1PA8 LINE L1 6100 6167 -5 1588 166 30 30 chr15 18239005 18239306 -67456448 + AluJo SINE Alu 1 301 -11 711 184 0 50 chr15 18239510 18239651 -67456103 + AluJb SINE Alu 162 295 -17 1408 281 64 116 chr15 18239651 18240091 -67455663 + HAL1 LINE L1 1354 1815 -692 2285 119 0 0 chr15 18240091 18240401 -67455353 + AluSx SINE Alu 1 310 -2 1408 281 64 116 chr15 18240401 18240659 -67455095 + HAL1 LINE L1 1815 2085 -422 2296 108 3 0 chr15 18240659 18240956 -67454798 + AluSp SINE Alu 5 302 -11 1408 281 64 116 chr15 18240956 18241122 -67454632 + HAL1 LINE L1 2085 2258 -249 1973 156 7 0 chr15 18241122 18241417 -67454337 + AluJb SINE Alu 1 297 -15 1408 281 64 116 chr15 18241417 18241747 -67454007 + HAL1 LINE L1 2258 2488 -19 1259 258 67 95 chr15 18241764 18242435 -67453319 + MER21B LTR ERV1 20 671 -192 226 300 27 18 chr15 18242756 18242866 -67452888 + L1M3 LINE L1 4745 4855 -1291 263 257 0 14 chr15 18242874 18242948 -67452806 + L1M2 LINE L1 5367 5439 -852 1033 240 128 40 chr15 18243102 18243233 -67452521 + L1 LINE L1 4483 4601 -1545 2158 112 0 32 chr15 18243233 18243545 -67452209 + AluSg SINE Alu 1 302 -8 1033 240 128 40 chr15 18243545 18243782 -67451972 + L1 LINE L1 4601 4899 -1247 2281 110 0 10 chr15 18243782 18244091 -67451663 - AluSg SINE Alu -2 308 3 1033 240 128 40 chr15 18244091 18244167 -67451587 + L1 LINE L1 4899 4967 -1179 430 162 0 0 chr15 18244848 18244916 -67450838 - AluS SINE Alu -240 69 2 2093 184 87 12 chr15 18244917 18245015 -67450739 + L1M3 LINE L1 4892 4981 -1202 2380 95 0 0 chr15 18245015 18245310 -67450444 + AluSx SINE Alu 6 300 -12 2093 184 87 12 chr15 18245310 18245961 -67449793 + L1M3 LINE L1 4981 5703 -480 1931 139 7 7 chr15 18245961 18246256 -67449498 + AluSx SINE Alu 1 295 -17 2093 184 87 12 chr15 18246256 18246330 -67449424 + L1M3 LINE L1 5703 5770 -413 391 262 81 34 chr15 18246354 18246503 -67449251 - L2 LINE L2 -545 2769 2614 370 275 101 27 chr15 18246523 18246781 -67448973 + L1ME LINE L1 5500 5776 -345 1710 120 102 0 chr15 18246947 18247213 -67448541 + AluSg SINE Alu 1 293 -17 188 324 70 0 chr15 18247338 18247409 -67448345 + L3 LINE CR1 1141 1216 -361 1658 188 3 19 chr15 18247724 18248038 -67447716 + AluJo SINE Alu 1 309 -3 1277 214 38 19 chr15 18248065 18248378 -67447376 + L1ME LINE L1 5458 5776 -386 229 203 0 16 chr15 18248614 18248678 -67447076 + (CGG)n Simple_repeat Simple_repeat 2 64 0 326 233 41 0 chr15 18249015 18249088 -67446666 + MER5A DNA MER1_type 1 76 -113 2243 103 7 0 chr15 18249088 18249389 -67446365 + AluSq SINE Alu 1 303 -10 1293 135 49 69 chr15 18249402 18249542 -67446212 + L1MA8 LINE L1 5989 6130 -161 2364 93 0 3 chr15 18249542 18249842 -67445912 + AluSg SINE Alu 1 299 -11 1293 135 49 69 chr15 18249842 18249979 -67445775 + L1MA8 LINE L1 6130 6262 -29 2351 90 0 3 chr15 18249979 18250269 -67445485 - AluSg SINE Alu -21 289 1 1293 135 49 69 chr15 18250269 18250294 -67445460 + L1MA8 LINE L1 6262 6286 -5 391 225 25 6 chr15 18250296 18250386 -67445368 + MER5A DNA MER1_type 43 141 -48 460 169 0 0 chr15 18250965 18251036 -67444718 + AluSp/q SINE Alu 226 296 -17 1960 115 39 0 chr15 18251242 18251562 -67444192 - AluSx SINE Alu 0 331 1 342 323 40 94 chr15 18251868 18252165 -67443589 - L2 LINE L2 -33 3239 2959 205 233 23 70 chr15 18252840 18252926 -67442828 - MIR3 SINE MIR -41 167 86 2292 95 7 0 chr15 18252959 18253253 -67442501 + AluSp SINE Alu 1 296 -17 2145 108 0 0 chr15 18253263 18253540 -67442214 + AluSx SINE Alu 20 296 -16 205 200 0 18 chr15 18257533 18257588 -67438166 + G-rich Low_complexity Low_complexity 3 56 0 196 326 87 0 chr15 18258609 18258701 -67437053 + MIR SINE MIR 17 116 -146 307 311 27 61 chr15 18258704 18258815 -67436939 - MER5A DNA MER1_type -4 185 79 2346 107 0 3 chr15 18258815 18259124 -67436630 - AluSx SINE Alu -4 308 1 307 311 27 61 chr15 18259124 18259160 -67436594 - MER5A DNA MER1_type -110 79 43 236 203 101 38 chr15 18259204 18259283 -67436471 + MIR SINE MIR 131 214 -48 2459 95 0 0 chr15 18259591 18259896 -67435858 + AluSc SINE Alu 1 305 -4 181 0 0 65 chr15 18259953 18259984 -67435770 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 274 276 57 19 chr15 18260308 18260413 -67435341 + MIR SINE MIR 23 131 -77 183 156 62 0 chr15 18260847 18260879 -67434875 - MIR SINE MIR -111 151 118 1165 180 23 143 chr15 18261523 18261734 -67434020 - AluYb8 SINE Alu 0 308 154 1805 121 0 4 chr15 18261734 18261973 -67433781 - AluSx SINE Alu -67 245 8 1165 180 23 143 chr15 18261973 18262111 -67433643 - AluYb8 SINE Alu -154 154 1 1673 91 5 0 chr15 18262323 18262532 -67433222 + AluSq SINE Alu 3 212 -101 204 97 0 0 chr15 18263459 18263490 -67432264 + (CAGG)n Simple_repeat Simple_repeat 1 31 0 207 200 0 33 chr15 18265388 18265448 -67430306 + C-rich Low_complexity Low_complexity 4 61 0 32 26 0 0 chr15 18265741 18265780 -67429974 + GC_rich Low_complexity Low_complexity 1 39 0 23 86 0 0 chr15 18265831 18265889 -67429865 + GC_rich Low_complexity Low_complexity 1 58 0 29 78 0 0 chr15 18266000 18266064 -67429690 + GC_rich Low_complexity Low_complexity 1 64 0 224 253 0 108 chr15 18266700 18266783 -67428971 + MIR3 SINE MIR 81 154 -54 1917 132 0 68 chr15 18267270 18267596 -67428158 + AluJb SINE Alu 7 310 -2 872 199 13 0 chr15 18267596 18267752 -67428002 + AluJb SINE Alu 137 294 -18 358 233 101 82 chr15 18268424 18268583 -67427171 - MIR3 SINE MIR -12 196 35 810 129 0 71 chr15 18268589 18268729 -67427025 - AluSq SINE Alu -46 267 138 1635 143 26 75 chr15 18268853 18269160 -67426594 + AluJb SINE Alu 1 292 -20 1090 274 99 16 chr15 18269170 18269746 -67426008 - L1MEc LINE L1 -2048 4378 3755 259 235 171 5 chr15 18269743 18269826 -67425928 - L1MEc LINE L1 -2975 3451 3383 * 746 249 88 55 chr15 18269826 18270155 -67425599 + MER58B DNA MER1_type 2 341 0 259 235 171 5 chr15 18270155 18270258 -67425496 - L1MEc LINE L1 -3043 3383 3234 1527 273 62 29 chr15 18270263 18270707 -67425047 - L1MEc LINE L1 -3317 3109 2681 1874 144 25 3 chr15 18270707 18270992 -67424762 - AluSx SINE Alu -21 291 1 1527 273 62 29 chr15 18270992 18271370 -67424384 - L1MEc LINE L1 -3745 2681 2276 1106 194 118 49 chr15 18271370 18271716 -67424038 - MLT1A2 LTR MaLR -4 370 1 1527 273 62 29 chr15 18271716 18271752 -67424002 - L1MEc LINE L1 -4150 2276 2243 487 230 14 0 chr15 18271921 18272060 -67423694 + CT-rich Low_complexity Low_complexity 1 141 0 1973 141 0 0 chr15 18272176 18272446 -67423308 - AluSx SINE Alu 0 312 43 2156 146 43 73 chr15 18272511 18273044 -67422710 - L1MB8 LINE L1 0 6178 5662 2914 203 20 62 chr15 18273048 18273195 -67422559 - L1MB8 LINE L1 -1237 4909 4757 1645 168 0 77 chr15 18273195 18273505 -67422249 + AluJo SINE Alu 1 286 -26 2914 203 20 62 chr15 18273505 18274241 -67421513 - L1MB8 LINE L1 -1389 4757 4063 588 276 70 35 chr15 18274283 18274722 -67421032 - L1MEc LINE L1 -4766 1660 1203 207 0 0 0 chr15 18274722 18274745 -67421009 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 588 276 70 35 chr15 18274745 18274765 -67420989 - L1MEc LINE L1 -5223 1203 1185 2110 108 52 3 chr15 18275334 18275620 -67420134 - AluSx SINE Alu -12 300 1 812 151 0 16 chr15 18275636 18275762 -67419992 - AluSq/x SINE Alu -189 124 1 2590 24 0 0 chr15 18275780 18276073 -67419681 - L1PA3 LINE L1 0 6155 5863 2021 116 65 0 chr15 18276758 18277033 -67418721 + AluSg SINE Alu 1 293 -17 855 196 0 40 chr15 18277098 18277147 -67418607 - AluJo/FRAM SINE Alu 0 302 253 2401 52 49 0 chr15 18277147 18277434 -67418320 - AluY SINE Alu -10 301 1 855 196 0 40 chr15 18277434 18277557 -67418197 - AluJo/FRAM SINE Alu -49 253 137 2266 107 3 0 chr15 18277810 18278109 -67417645 - AluSc SINE Alu -9 300 1 296 157 0 101 chr15 18278346 18278435 -67417319 + L1MB5 LINE L1 6086 6165 -9 2138 142 3 0 chr15 18280027 18280338 -67415416 - AluSx SINE Alu 0 312 1 2255 103 0 7 chr15 18280491 18280792 -67414962 - AluY SINE Alu -12 299 1 2234 102 10 0 chr15 18280794 18281087 -67414667 - AluSc SINE Alu -13 296 1 308 177 81 16 chr15 18281280 18281342 -67414412 - L1ME4a LINE L1 -6 6115 6050 240 226 0 29 chr15 18281798 18281900 -67413854 + T-rich Low_complexity Low_complexity 5 103 0 2015 56 8 16 chr15 18282132 18282384 -67413370 - AluY SINE Alu -23 288 39 2443 77 46 44 chr15 18282549 18282664 -67413090 - L1PA8 LINE L1 -1 6171 6058 2527 59 7 7 chr15 18282664 18282968 -67412786 - AluY SINE Alu -7 304 1 2443 77 46 44 chr15 18282968 18283218 -67412536 - L1PA8 LINE L1 -114 6058 5805 22 0 0 0 chr15 18283758 18283780 -67411974 + AT_rich Low_complexity Low_complexity 1 22 0 220 246 18 0 chr15 18283781 18283838 -67411916 + CT-rich Low_complexity Low_complexity 2 59 0 296 262 30 18 chr15 18283850 18284014 -67411740 - HAL1b LINE L1 -510 838 673 299 236 107 110 chr15 18284145 18284408 -67411346 - Charlie8 DNA MER1_type -1026 1391 32 255 85 21 0 chr15 18284733 18284780 -67410974 + Alu SINE Alu 251 298 -4 2475 162 140 58 chr15 18285313 18285986 -67409768 - L1MC3 LINE L1 -11 7774 7047 1427 111 15 0 chr15 18286003 18286201 -67409553 + AluSg/x SINE Alu 101 301 -11 1662 173 9 31 chr15 18286237 18286555 -67409199 - AluJb SINE Alu -1 311 1 517 196 116 0 chr15 18286661 18286773 -67408981 - FLAM_A SINE Alu -8 125 1 2419 76 3 0 chr15 18286820 18287124 -67408630 + AluY SINE Alu 1 305 -6 459 149 0 14 chr15 18287636 18287710 -67408044 - AluS SINE Alu -240 73 1 1599 208 0 14 chr15 18287809 18288093 -67407661 - AluJb SINE Alu -18 294 15 246 243 159 0 chr15 18288201 18288295 -67407459 - MIR SINE MIR -64 144 37 2425 81 0 0 chr15 18288402 18288698 -67407056 + AluSg SINE Alu 1 296 -14 334 202 0 39 chr15 18288794 18288871 -67406883 - FRAM/FAM SINE Alu -103 63 1 2054 139 23 0 chr15 18289017 18289319 -67406435 - AluSx SINE Alu -3 309 1 1140 215 51 0 chr15 18289595 18289832 -67405922 - MLT1E LTR MaLR -3 590 342 495 252 14 28 chr15 18289877 18290020 -67405734 - MLT1E LTR MaLR -452 141 1 2144 116 0 3 chr15 18290759 18291060 -67404694 - AluSq SINE Alu -9 304 5 1783 140 3 14 chr15 18291508 18291793 -67403961 + AluJb SINE Alu 1 282 -30 1550 186 32 0 chr15 18291902 18292181 -67403573 - AluJb SINE Alu -24 288 1 2136 101 7 20 chr15 18292260 18292566 -67403188 - AluSp SINE Alu -5 308 7 581 242 0 8 chr15 18292879 18293011 -67402743 - FLAM_C SINE Alu -1 132 2 2147 134 3 0 chr15 18294141 18294440 -67401314 - AluSx SINE Alu -12 300 1 30 59 0 0 chr15 18294522 18294573 -67401181 + AT_rich Low_complexity Low_complexity 1 51 0 1433 149 90 30 chr15 18294671 18294963 -67400791 - AluJo SINE Alu 0 308 1 782 217 114 0 chr15 18295133 18295317 -67400437 - MER58A DNA MER1_type -1 223 19 222 230 0 68 chr15 18295857 18295931 -67399823 + GA-rich Low_complexity Low_complexity 2 70 0 1303 195 46 19 chr15 18296975 18297237 -67398517 - AluSx SINE Alu -39 273 5 514 107 13 0 chr15 18297370 18297445 -67398309 - AluSg SINE Alu -205 105 30 25 0 0 0 chr15 18297491 18297516 -67398238 + AT_rich Low_complexity Low_complexity 1 25 0 27 0 0 0 chr15 18297679 18297706 -67398048 + AT_rich Low_complexity Low_complexity 1 27 0 2376 68 0 23 chr15 18298192 18298500 -67397254 + AluY SINE Alu 1 301 -10 25 31 0 0 chr15 18298841 18298873 -67396881 + AT_rich Low_complexity Low_complexity 1 32 0 282 233 151 62 chr15 18298992 18299175 -67396579 - MIR SINE MIR -39 223 17 1413 275 103 2 chr15 18299395 18299988 -67395766 + L1M4 LINE L1 3212 3864 -2282 355 62 0 0 chr15 18300009 18300057 -67395697 + Alu SINE Alu 251 298 -4 328 188 0 21 chr15 18300272 18300368 -67395386 + (TA)n Simple_repeat Simple_repeat 1 94 0 1927 251 68 25 chr15 18300732 18301478 -67394276 + L1M4 LINE L1 3923 4700 -1446 1917 157 0 7 chr15 18301485 18301779 -67393975 + AluJb SINE Alu 1 292 -20 718 294 58 48 chr15 18302022 18302279 -67393475 + L1ME3A LINE L1 4561 4814 -1332 1585 157 24 24 chr15 18302279 18302572 -67393182 + AluJo SINE Alu 1 293 -19 1939 123 25 4 chr15 18302576 18302874 -67392880 + AluSx SINE Alu 1 304 0 718 294 58 48 chr15 18302874 18303148 -67392606 + L1ME3A LINE L1 4816 5103 -1043 2204 125 0 0 chr15 18303212 18303508 -67392246 + AluSx SINE Alu 1 296 -16 1153 272 134 11 chr15 18303532 18304149 -67391605 + L1ME3A LINE L1 5254 5946 -224 2569 62 0 0 chr15 18304149 18304455 -67391299 - AluY SINE Alu -5 306 1 244 237 171 13 chr15 18304558 18304710 -67391044 + L1ME3A LINE L1 5988 6163 -7 1569 189 21 11 chr15 18305453 18305739 -67390015 - AluJo SINE Alu -23 289 1 25 31 0 0 chr15 18306276 18306308 -67389446 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr15 18306443 18306465 -67389289 + (T)n Simple_repeat Simple_repeat 1 22 0 189 0 0 0 chr15 18306643 18306664 -67389090 + (T)n Simple_repeat Simple_repeat 1 21 0 30 45 0 0 chr15 18306702 18306746 -67389008 + GC_rich Low_complexity Low_complexity 1 44 0 29 0 0 0 chr15 18306746 18306775 -67388979 + AT_rich Low_complexity Low_complexity 1 29 0 294 296 121 34 chr15 18307089 18307295 -67388459 + L2 LINE L2 3090 3313 0 707 188 59 70 chr15 18307318 18307504 -67388250 + AluJb SINE Alu 110 293 -19 715 198 0 0 chr15 18307998 18308124 -67387630 + FLAM_A SINE Alu 1 126 -7 702 162 113 21 chr15 18308209 18308351 -67387403 + AluJb SINE Alu 139 293 -19 2593 0 0 7 chr15 18308358 18308691 -67387063 + AluYa5 SINE Alu 1 331 0 239 154 154 0 chr15 18308782 18308847 -67386907 - L1MA8 LINE L1 -11 6280 6206 571 214 107 78 chr15 18308973 18309216 -67386538 + MIR SINE MIR 13 262 0 1980 157 3 3 chr15 18309253 18309552 -67386202 + AluSx SINE Alu 1 299 -13 711 272 96 23 chr15 18309556 18309817 -67385937 + L2 LINE L2 3033 3312 -1 2298 93 0 3 chr15 18310854 18311156 -67384598 + AluSx SINE Alu 1 301 -11 2137 156 57 7 chr15 18311156 18311561 -67384193 - Tigger2a DNA MER2_type -9 425 1 582 148 312 5 chr15 18311562 18311751 -67384003 + MER5C DNA MER1_type 78 324 0 1778 159 0 43 chr15 18312346 18312648 -67383106 + AluSx SINE Alu 1 289 -23 1366 136 5 9 chr15 18313430 18313650 -67382104 + AluSq SINE Alu 81 299 -14 412 258 226 43 chr15 18315113 18315299 -67380455 - MIR SINE MIR -24 238 19 2227 97 3 3 chr15 18315334 18315642 -67380112 - AluY SINE Alu -3 308 1 243 268 0 56 chr15 18315860 18315931 -67379823 + MIR SINE MIR 196 262 0 343 26 53 158 chr15 18316108 18316151 -67379603 + MER41B LTR ERV1 480 513 -122 2023 137 7 0 chr15 18316151 18316451 -67379303 - AluSx SINE Alu -10 302 1 343 26 53 158 chr15 18316451 18316483 -67379271 + MER41B LTR ERV1 513 547 -88 1716 171 30 3 chr15 18317104 18317402 -67378352 - AluJb SINE Alu -6 306 1 2327 75 10 3 chr15 18319285 18319577 -67376177 + AluSc SINE Alu 1 294 -15 36 0 0 0 chr15 18320978 18321014 -67374740 + AT_rich Low_complexity Low_complexity 1 36 0 1267 137 0 118 chr15 18321014 18321284 -67374470 - AluY SINE Alu -73 238 1 2121 120 10 0 chr15 18321528 18321819 -67373935 + AluSx SINE Alu 1 294 -18 2267 91 14 0 chr15 18321948 18322235 -67373519 + AluSg SINE Alu 1 291 -19 29 0 0 0 chr15 18324250 18324279 -67371475 + AT_rich Low_complexity Low_complexity 1 29 0 28 79 0 0 chr15 18324387 18324450 -67371304 + AT_rich Low_complexity Low_complexity 1 63 0 2539 66 0 0 chr15 18324896 18325201 -67370553 + AluSc SINE Alu 1 305 -4 2158 110 0 10 chr15 18325541 18325840 -67369914 - AluSg SINE Alu -14 296 1 2353 99 0 7 chr15 18325936 18326239 -67369515 + AluSp SINE Alu 2 302 -11 21 71 0 0 chr15 18327654 18327696 -67368058 + AT_rich Low_complexity Low_complexity 1 42 0 216 158 0 0 chr15 18328007 18328045 -67367709 + (TA)n Simple_repeat Simple_repeat 1 38 0 1143 143 0 0 chr15 18328045 18328206 -67367548 - AluSg/x SINE Alu -23 287 127 261 245 66 9 chr15 18328589 18328695 -67367059 + MER113 DNA MER1_type? 4 115 -406 1986 118 7 20 chr15 18328713 18329019 -67366735 - AluSg SINE Alu -8 302 1 740 21 0 0 chr15 18329047 18329140 -67366614 + SVA Other Other 1294 1386 0 349 267 72 46 chr15 18329153 18329348 -67366406 + MER113 DNA MER1_type? 158 357 -164 41 36 0 0 chr15 18329398 18329453 -67366301 + AT_rich Low_complexity Low_complexity 1 55 0 1664 191 0 3 chr15 18329462 18329744 -67366010 - AluJo SINE Alu -31 281 1 2409 81 0 13 chr15 18330097 18330405 -67365349 + AluSx SINE Alu 1 304 -8 838 166 40 20 chr15 18330892 18331043 -67364711 + FRAM SINE Alu 6 159 -17 1827 165 0 10 chr15 18331047 18331338 -67364416 + AluSx SINE Alu 1 288 -24 523 180 16 49 chr15 18334067 18334189 -67361565 - MER58B DNA MER1_type 0 341 224 2164 103 3 20 chr15 18334215 18334516 -67361238 + AluSq SINE Alu 3 298 -15 1432 115 14 5 chr15 18334812 18335021 -67360733 - AluSg/x SINE Alu -20 290 80 2262 94 7 13 chr15 18335321 18335630 -67360124 - AluSx SINE Alu -5 307 1 1509 130 0 5 chr15 18335901 18336117 -67359637 + AluSx SINE Alu 2 216 -96 1785 149 10 13 chr15 18336682 18336984 -67358770 - AluJo SINE Alu -4 308 8 395 298 117 19 chr15 18337555 18337760 -67357994 + MIR SINE MIR 32 256 -6 663 303 145 18 chr15 18338586 18339084 -67356670 + L1ME LINE L1 5257 5817 -345 816 170 0 7 chr15 18339152 18339287 -67356467 - AluJo SINE Alu -178 134 1 1669 177 43 7 chr15 18339632 18339937 -67355817 - MER2 DNA MER2_type -28 317 2 485 239 157 35 chr15 18341650 18341905 -67353849 + HAL1 LINE L1 2165 2450 -57 225 0 0 0 chr15 18341912 18341937 -67353817 + (TG)n Simple_repeat Simple_repeat 2 26 0 714 203 8 8 chr15 18341943 18342076 -67353678 - FLAM_C SINE Alu 0 133 1 339 326 43 33 chr15 18342546 18342730 -67353024 - L2 LINE L2 -559 2755 2570 1499 150 21 108 chr15 18343209 18343542 -67352212 - AluYb8 SINE Alu -12 306 3 2005 128 29 10 chr15 18344935 18345262 -67350492 - AluSx SINE Alu 0 333 1 2620 55 0 7 chr15 18345586 18345894 -67349860 - AluY SINE Alu -5 306 1 2181 114 4 0 chr15 18345955 18346265 -67349489 + AluSp SINE Alu 1 311 0 2061 135 0 10 chr15 18346369 18346673 -67349081 + AluSx SINE Alu 1 301 -11 2473 70 0 0 chr15 18346746 18347046 -67348708 - AluY SINE Alu -11 300 1 1694 124 48 45 chr15 18347047 18347337 -67348417 - AluJb SINE Alu -21 291 1 180 0 0 0 chr15 18351796 18351816 -67343938 + (T)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr15 18352297 18352320 -67343434 + AT_rich Low_complexity Low_complexity 1 23 0 2368 76 0 7 chr15 18353338 18353641 -67342113 - AluY SINE Alu -10 301 1 209 161 36 54 chr15 18354040 18354096 -67341658 + L2 LINE L2 3259 3313 0 1380 146 176 23 chr15 18354358 18354659 -67341095 - MER7A DNA MER2_type -1 345 1 2346 89 10 0 chr15 18354844 18355146 -67340608 + AluSc SINE Alu 1 305 -4 224 331 59 29 chr15 18358108 18358244 -67337510 + MIR SINE MIR 41 180 -82 254 257 130 121 chr15 18359337 18359557 -67336197 - L2 LINE L2 0 3272 3047 2335 103 0 0 chr15 18359557 18359858 -67335896 + AluSg SINE Alu 1 301 -9 254 257 130 121 chr15 18359858 18359952 -67335802 - L2 LINE L2 -225 3047 2955 200 337 93 21 chr15 18361242 18361435 -67334319 + L3b LINE CR1 1254 1460 -123 2424 73 0 0 chr15 18361717 18362005 -67333749 - AluSg SINE Alu -22 288 1 906 136 15 0 chr15 18362009 18362141 -67333613 - AluJo SINE Alu -178 134 1 227 176 98 0 chr15 18362141 18362192 -67333562 - AluYb8 SINE Alu -118 190 135 2114 109 0 0 chr15 18363563 18363838 -67331916 - AluSx SINE Alu -3 309 35 1063 155 0 0 chr15 18363994 18364155 -67331599 + FRAM SINE Alu 1 161 -5 2389 58 7 42 chr15 18364464 18364774 -67330980 + AluY SINE Alu 1 299 -12 652 304 31 9 chr15 18364945 18365169 -67330585 - MIR SINE MIR -31 231 3 2372 65 0 0 chr15 18366239 18366517 -67329237 + AluY SINE Alu 16 293 -18 799 150 0 0 chr15 18366856 18366976 -67328778 + FLAM_A SINE Alu 1 120 -13 2532 70 0 0 chr15 18366998 18367300 -67328454 + AluSc SINE Alu 1 302 -7 966 185 0 56 chr15 18367309 18367504 -67328250 + AluJo SINE Alu 36 219 -93 23 68 0 0 chr15 18368192 18368236 -67327518 + AT_rich Low_complexity Low_complexity 1 44 0 841 286 74 48 chr15 18368242 18368848 -67326906 + L1ME4a LINE L1 5500 6121 0 2406 71 0 3 chr15 18368981 18369276 -67326478 + AluY SINE Alu 1 294 -17 243 0 0 0 chr15 18369276 18369303 -67326451 + (TA)n Simple_repeat Simple_repeat 2 28 0 1027 112 0 0 chr15 18369400 18369543 -67326211 - AluSx SINE Alu -15 295 153 438 114 0 148 chr15 18369546 18369634 -67326120 - AluSx SINE Alu -237 76 2 303 158 69 69 chr15 18369701 18369802 -67325952 - L1ME4a LINE L1 -22 6099 5999 24 0 0 0 chr15 18369848 18369872 -67325882 + AT_rich Low_complexity Low_complexity 1 24 0 2194 107 0 0 chr15 18369884 18370164 -67325590 - AluSg SINE Alu -30 280 1 38 22 0 0 chr15 18370426 18370471 -67325283 + AT_rich Low_complexity Low_complexity 1 45 0 2169 104 0 0 chr15 18370475 18370754 -67325000 - AluSg SINE Alu -31 279 1 206 309 191 0 chr15 18370796 18370922 -67324832 - L2 LINE L2 -4 3309 3160 226 317 119 22 chr15 18371203 18371471 -67324283 - L2 LINE L2 -457 2857 2564 490 240 240 6 chr15 18372458 18372641 -67323113 + MIR SINE MIR 25 250 -12 270 280 43 0 chr15 18372770 18372863 -67322891 + MER5B DNA MER1_type 2 98 -80 1858 87 4 0 chr15 18374336 18374566 -67321188 + AluSp SINE Alu 65 295 -18 2109 186 24 8 chr15 18375416 18375704 -67320050 + Charlie1 DNA MER1_type 5 287 -2474 2218 95 48 0 chr15 18375704 18375999 -67319755 + AluY SINE Alu 1 309 -2 2109 186 24 8 chr15 18375999 18376187 -67319567 + Charlie1 DNA MER1_type 287 2761 0 444 191 48 19 chr15 18376187 18376290 -67319464 - MLT1I LTR MaLR -16 393 288 2064 112 11 7 chr15 18376448 18376733 -67319021 + AluSx SINE Alu 1 286 -26 984 279 45 46 chr15 18377163 18377381 -67318373 - L2 LINE L2 0 3313 3096 2357 113 7 0 chr15 18377381 18377691 -67318063 + AluSq SINE Alu 1 312 -1 984 279 45 46 chr15 18377691 18378085 -67317669 - L2 LINE L2 -217 3096 2709 2275 78 0 10 chr15 18378085 18378405 -67317349 - AluY SINE Alu 0 311 1 984 279 45 46 chr15 18378405 18378531 -67317223 - L2 LINE L2 -604 2709 2584 475 271 53 43 chr15 18378535 18378742 -67317012 + MER63A DNA MER1_type 2 210 0 809 234 39 39 chr15 18379327 18379583 -67316171 - MER112 DNA MER1_type 0 256 1 2627 56 0 0 chr15 18380465 18380768 -67314986 + AluY SINE Alu 1 303 -8 2145 125 0 0 chr15 18380792 18381079 -67314675 - AluSx SINE Alu -25 287 1 2154 137 70 41 chr15 18382701 18382848 -67312906 - L1MB7 LINE L1 -2 6182 6041 1822 127 35 3 chr15 18382848 18383131 -67312623 - AluJb SINE Alu -20 292 1 2154 137 70 41 chr15 18383131 18383282 -67312472 - L1MB7 LINE L1 -143 6041 5896 1559 153 76 4 chr15 18383282 18383531 -67312223 - AluJo SINE Alu -45 267 1 2154 137 70 41 chr15 18383531 18383690 -67312064 - L1MB7 LINE L1 -288 5896 5711 2061 126 0 7 chr15 18384062 18384355 -67311399 + AluSx SINE Alu 1 291 -21 3526 105 133 36 chr15 18384395 18384731 -67311023 - Tigger3(Golem) DNA MER2_type 0 3029 2727 203 61 30 0 chr15 18384731 18384764 -67310990 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 3526 105 133 36 chr15 18384764 18384969 -67310785 - Tigger3(Golem) DNA MER2_type -302 2727 2543 2211 123 0 0 chr15 18384969 18385270 -67310484 - AluSx SINE Alu -11 301 1 3526 105 133 36 chr15 18385270 18385413 -67310341 - Tigger3(Golem) DNA MER2_type -486 2543 2278 666 204 0 0 chr15 18385404 18385512 -67310242 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 369 209 191 0 chr15 18385514 18385629 -67310125 - MIR SINE MIR -25 237 101 2313 113 3 0 chr15 18385629 18385940 -67309814 + AluSx SINE Alu 1 312 0 1641 133 0 42 chr15 18385969 18386239 -67309515 + AluJo SINE Alu 37 289 -23 263 310 47 0 chr15 18386234 18386328 -67309426 - MIR SINE MIR -147 115 18 2302 82 3 0 chr15 18386358 18386649 -67309105 - AluSp SINE Alu -21 292 1 200 186 0 0 chr15 18386933 18386976 -67308778 + L2 LINE L2 2923 2965 -349 342 278 209 27 chr15 18388565 18388824 -67306930 - L2 LINE L2 0 3313 3008 2180 109 3 7 chr15 18390265 18390568 -67305186 + AluSx SINE Alu 1 302 -10 2297 84 3 3 chr15 18390603 18390914 -67304840 - AluY SINE Alu 0 311 1 2151 128 0 0 chr15 18390989 18391285 -67304469 - AluSq SINE Alu -17 296 1 1627 106 0 34 chr15 18391365 18391601 -67304153 + AluJb SINE Alu 73 300 -12 810 159 0 0 chr15 18391621 18391747 -67304007 + FLAM_A SINE Alu 10 135 -7 1684 161 39 42 chr15 18392945 18393255 -67302499 + AluJb SINE Alu 1 309 -3 1026 198 11 5 chr15 18393884 18394071 -67301683 - MER5A DNA MER1_type -1 188 1 296 293 61 10 chr15 18394174 18394273 -67301481 - MER5B DNA MER1_type -1 177 74 1557 242 61 40 chr15 18396391 18396936 -67298818 - MER90 LTR ERV1 -16 559 4 467 313 68 0 chr15 18397452 18397599 -67298155 + MIR SINE MIR 85 241 -21 2167 208 51 11 chr15 18398423 18398976 -67296778 + L1MD3 LINE L1 7405 7979 -16 796 257 126 5 chr15 18403073 18403295 -67292459 + MIR SINE MIR 14 262 0 344 263 12 0 chr15 18407317 18407397 -67288357 - MER94 DNA DNA -6 128 48 202 292 0 0 chr15 18408883 18408931 -67286823 + (CA)n Simple_repeat Simple_repeat 1 48 0 2201 86 7 20 chr15 18409524 18409828 -67285926 + AluSx SINE Alu 1 300 -12 24 0 0 0 chr15 18409939 18409963 -67285791 + GC_rich Low_complexity Low_complexity 1 24 0 212 206 19 88 chr15 18410452 18410612 -67285142 + (CGGGG)n Simple_repeat Simple_repeat 1 149 0 226 244 0 0 chr15 18411128 18411173 -67284581 + CT-rich Low_complexity Low_complexity 4 48 0 232 209 295 0 chr15 18411329 18411434 -67284320 - L1MC4a LINE L1 -1868 5940 5805 373 224 46 121 chr15 18411516 18411690 -67284064 - L2 LINE L2 -4 3309 3149 255 281 24 37 chr15 18411708 18411790 -67283964 - L2 LINE L2 -367 2946 2866 1296 170 91 25 chr15 18411828 18412104 -67283650 - AluJo SINE Alu -18 294 1 830 163 208 6 chr15 18412297 18412475 -67283279 + AluJo SINE Alu 1 214 -98 239 247 4 4 chr15 18412476 18412553 -67283201 + MER52C LTR ERV1 1 60 -1218 3737 174 139 16 chr15 18412933 18413793 -67281961 + MER52A LTR ERV1 56 1021 -734 4228 166 46 5 chr15 18414125 18414892 -67280862 + MER52A LTR ERV1 957 1754 -1 504 153 0 0 chr15 18414892 18414964 -67280790 + AluJo SINE Alu 211 282 -30 263 381 41 22 chr15 18415473 18415743 -67280011 - L2 LINE L2 -453 2861 2587 851 272 46 52 chr15 18415745 18415901 -67279853 - L2 LINE L2 0 3313 3158 213 39 0 0 chr15 18415901 18415927 -67279827 + (TA)n Simple_repeat Simple_repeat 2 27 0 1905 161 3 0 chr15 18415927 18416231 -67279523 - AluJo SINE Alu -7 305 1 851 272 46 52 chr15 18416231 18416422 -67279332 - L2 LINE L2 -153 3160 2967 188 310 70 31 chr15 18416389 18416518 -67279236 - L2 LINE L2 -720 2594 2461 * 239 198 0 86 chr15 18416736 18416817 -67278937 + L2 LINE L2 3190 3263 -9 351 324 81 0 chr15 18419886 18420091 -67275663 + MIR SINE MIR 39 258 -4 2192 84 10 7 chr15 18420104 18420400 -67275354 - AluY SINE Alu -14 297 1 633 229 159 10 chr15 18422291 18422492 -67273262 + MIR SINE MIR 24 254 -8 183 326 0 0 chr15 18425305 18425354 -67270400 + L2 LINE L2 3210 3258 -14 1885 97 31 0 chr15 18425593 18425852 -67269902 - AluSx SINE Alu -13 299 33 236 203 0 31 chr15 18427581 18427645 -67268109 + (CTGGGG)n Simple_repeat Simple_repeat 3 64 0 345 289 114 18 chr15 18433107 18433221 -67262533 + MIR3 SINE MIR 6 130 -78 671 79 0 0 chr15 18434452 18434541 -67261213 - 5S rRNA rRNA -32 89 1 343 289 74 7 chr15 18438323 18438458 -67257296 - MER5B DNA MER1_type -4 174 31 233 188 42 0 chr15 18438647 18438695 -67257059 - MER5B DNA MER1_type -128 50 1 339 246 189 0 chr15 18440327 18440449 -67255305 + MIR SINE MIR 77 221 -41 1887 151 0 3 chr15 18440527 18440812 -67254942 + AluSx SINE Alu 2 285 -27 668 167 106 66 chr15 18441644 18441673 -67254081 + MLT1B LTR MaLR 1 27 -363 2157 121 0 0 chr15 18441673 18441970 -67253784 - AluSx SINE Alu -15 297 1 668 167 106 66 chr15 18441970 18442138 -67253616 + MLT1B LTR MaLR 27 206 -184 1889 124 14 3 chr15 18446842 18447125 -67248629 - AluSx SINE Alu -26 286 1 187 271 188 57 chr15 18447405 18447535 -67248219 - MIR SINE MIR -56 152 12 614 245 44 84 chr15 18447836 18448109 -67247645 - L1MD2 LINE L1 -15 6344 6083 270 261 54 45 chr15 18451713 18451824 -67243930 - MIR3 SINE MIR -87 121 10 191 234 18 36 chr15 18455011 18455122 -67240632 + (CCCA)n Simple_repeat Simple_repeat 4 112 0 236 273 30 0 chr15 18460150 18460216 -67235538 - MER91A DNA MER1_type 0 196 129 462 315 48 6 chr15 18460231 18460396 -67235358 - MER91A DNA MER1_type -24 172 1 2339 58 7 0 chr15 18461298 18461593 -67234161 + AluYa5 SINE Alu 2 298 -13 387 301 172 23 chr15 18463143 18463538 -67232216 + L2 LINE L2 2818 3271 -1 404 382 91 29 chr15 18464730 18465154 -67230600 - HAL1 LINE L1 -1208 1299 876 1806 238 103 24 chr15 18466790 18466841 -67228913 + L2 LINE L2 2398 2444 -869 2115 88 6 60 chr15 18466841 18467023 -67228731 - AluSx SINE Alu -12 300 141 2341 87 0 3 chr15 18467023 18467335 -67228419 - AluY SINE Alu 0 311 1 2115 88 6 60 chr15 18467335 18467469 -67228285 - AluSx SINE Alu -171 141 1 1806 238 103 24 chr15 18467469 18468072 -67227682 + L2 LINE L2 2444 3139 -174 2145 96 3 3 chr15 18468072 18468373 -67227381 - AluSx SINE Alu -11 301 1 1806 238 103 24 chr15 18468373 18468563 -67227191 + L2 LINE L2 3139 3313 0 523 309 74 15 chr15 18470039 18470258 -67225496 - MIR SINE MIR -30 232 3 1732 141 4 4 chr15 18471554 18471810 -67223944 - AluSx SINE Alu -56 256 1 852 191 7 7 chr15 18472469 18472621 -67223133 - AluJb SINE Alu -14 298 147 254 336 118 0 chr15 18473740 18473850 -67221904 + MER5B DNA MER1_type 49 171 -7 390 339 130 4 chr15 18473911 18474150 -67221604 + L2 LINE L2 2804 3072 -241 194 284 185 0 chr15 18474214 18474295 -67221459 + L2 LINE L2 3217 3312 -1 687 269 88 5 chr15 18474503 18474696 -67221058 - MER63A DNA MER1_type -1 209 1 241 300 60 10 chr15 18474834 18474934 -67220820 + MIR SINE MIR 66 170 -92 272 271 106 80 chr15 18475527 18475678 -67220076 + MIR3 SINE MIR 47 201 -7 244 358 88 10 chr15 18478395 18478588 -67217166 + L2 LINE L2 2853 3060 -212 29 0 0 0 chr15 18478992 18479021 -67216733 + AT_rich Low_complexity Low_complexity 1 29 0 775 178 8 0 chr15 18479021 18479150 -67216604 - FLAM_C SINE Alu -2 131 2 1918 98 18 4 chr15 18481638 18481912 -67213842 + AluSc SINE Alu 32 309 0 650 271 22 22 chr15 18483501 18483682 -67212072 - MIR3 SINE MIR -3 205 25 1292 120 0 0 chr15 18485543 18485726 -67210028 - AluSx SINE Alu -13 297 115 243 0 0 0 chr15 18485842 18485869 -67209885 + (CA)n Simple_repeat Simple_repeat 2 28 0 934 99 0 0 chr15 18486011 18486132 -67209622 - AluSx SINE Alu -190 123 3 469 343 22 6 chr15 18487063 18487241 -67208513 + MIR SINE MIR 28 208 -54 379 0 0 0 chr15 18487853 18487895 -67207859 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2210 100 0 0 chr15 18487895 18488175 -67207579 - AluSg SINE Alu -1 321 1 21 0 0 0 chr15 18488266 18488287 -67207467 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr15 18488895 18488924 -67206830 + GC_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr15 18489018 18489054 -67206700 + GC_rich Low_complexity Low_complexity 1 36 0 705 126 0 0 chr15 18489206 18489301 -67206453 + AluJ/FLAM SINE Alu 2 96 -216 376 199 18 26 chr15 18489309 18489422 -67206332 + L1MC4 LINE L1 1996 6983 -1339 339 272 22 22 chr15 18489341 18489433 -67206321 - L1MC4 LINE L1 -1339 6703 6612 * 349 244 61 69 chr15 18489884 18490015 -67205739 - L1ME4a LINE L1 -11 6110 5981 282 56 0 0 chr15 18490024 18490060 -67205694 + (CA)n Simple_repeat Simple_repeat 2 37 0 348 299 49 42 chr15 18490084 18490228 -67205526 - L1ME4a LINE L1 -248 5873 5729 290 224 119 75 chr15 18492026 18492160 -67203594 - L2 LINE L2 -23 3290 3151 1646 181 13 7 chr15 18492237 18492540 -67203214 - AluJo SINE Alu -7 305 1 4594 177 97 0 chr15 18492588 18493430 -67202324 + LTR28 LTR ERV1 1 924 -96 1882 155 0 10 chr15 18494099 18494389 -67201365 - AluJb SINE Alu -23 289 3 423 0 0 0 chr15 18494393 18494440 -67201314 + (TG)n Simple_repeat Simple_repeat 2 48 0 2080 125 24 0 chr15 18494441 18494730 -67201024 - AluSx SINE Alu -16 296 1 387 221 158 31 chr15 18495081 18495208 -67200546 + Charlie8 DNA MER1_type 12 154 -2263 255 233 0 0 chr15 18495344 18495404 -67200350 + Charlie8 DNA MER1_type 351 410 -2007 2374 84 3 0 chr15 18497149 18497435 -67198319 - AluSx SINE Alu -25 287 1 2281 124 0 0 chr15 18498979 18499278 -67196476 + AluSx SINE Alu 1 299 -13 334 224 26 40 chr15 18499382 18499458 -67196296 - MIR SINE MIR -104 104 30 333 406 29 6 chr15 18499999 18500174 -67195580 + MIR SINE MIR 33 211 -51 198 0 0 0 chr15 18500608 18500630 -67195124 + (TG)n Simple_repeat Simple_repeat 1 22 0 1376 114 0 0 chr15 18501356 18501540 -67194214 - AluSx SINE Alu -12 298 115 243 0 0 0 chr15 18501656 18501683 -67194071 + (CA)n Simple_repeat Simple_repeat 2 28 0 1015 98 0 0 chr15 18501825 18501948 -67193806 - AluSx SINE Alu -189 123 1 441 322 40 20 chr15 18502877 18503076 -67192678 + MIR SINE MIR 28 230 -32 2296 89 0 0 chr15 18503667 18503985 -67191769 - AluSg SINE Alu 0 318 1 309 51 0 0 chr15 18504784 18504823 -67190931 + (CA)n Simple_repeat Simple_repeat 2 40 0 191 146 73 91 chr15 18504947 18505002 -67190752 + MIR3 SINE MIR 152 205 -3 300 320 165 24 chr15 18505458 18505664 -67190090 - MIR SINE MIR -12 250 16 328 297 25 25 chr15 18507133 18507251 -67188503 - L1MC4 LINE L1 -1 8041 7924 372 330 46 52 chr15 18507262 18507456 -67188298 + L1MD1 LINE L1 5769 5961 -223 299 294 64 9 chr15 18508564 18508673 -67187081 + LTR67 LTR ERVL 428 542 -15 1714 157 18 7 chr15 18508683 18508992 -67186762 + AluJo SINE Alu 1 312 0 649 297 107 20 chr15 18509237 18509584 -67186170 + HsTC2 DNA Tc2 215 591 -1307 1469 138 168 7 chr15 18509616 18509913 -67185841 - L1MB3 LINE L1 -36 6147 5803 519 286 29 4 chr15 18510051 18510227 -67185527 + MER5A DNA MER1_type 1 189 0 794 199 58 103 chr15 18510861 18511122 -67184632 + MIR SINE MIR 11 259 -3 191 231 0 0 chr15 18511139 18511178 -67184576 + L2 LINE L2 3262 3300 -13 484 267 37 51 chr15 18511184 18511366 -67184388 + L1ME1 LINE L1 5949 6129 -37 2003 123 3 14 chr15 18511366 18511650 -67184104 + AluSx SINE Alu 17 297 -15 484 267 37 51 chr15 18511650 18511684 -67184070 + L1ME1 LINE L1 6129 6162 -4 864 139 29 22 chr15 18512650 18512787 -67182967 + FLAM_C SINE Alu 1 138 -5 381 271 71 43 chr15 18513262 18513499 -67182255 + L2 LINE L2 2797 3050 -222 283 268 222 20 chr15 18513665 18513818 -67181936 + L2 LINE L2 3118 3301 -12 2848 155 16 78 chr15 18513820 18514439 -67181315 + L1MB1 LINE L1 5587 6167 -1 956 273 16 4 chr15 18514806 18515055 -67180699 - MIR SINE MIR -10 252 1 299 189 57 47 chr15 18515065 18515171 -67180583 + L1ME4a LINE L1 6015 6121 0 187 279 177 13 chr15 18516265 18516344 -67179410 + MIR3 SINE MIR 103 194 -14 301 148 36 9 chr15 18517484 18517570 -67178184 + L1M3 LINE L1 5352 5443 -712 273 323 23 31 chr15 18517569 18517699 -67178055 + L1MC4a LINE L1 5536 5664 -2144 * 413 97 0 136 chr15 18517729 18517805 -67177949 - L1MA8 LINE L1 -2 6289 6228 2046 126 0 14 chr15 18517805 18518150 -67177604 + AluJb SINE Alu 1 341 0 413 97 0 136 chr15 18518150 18518175 -67177579 - L1MA8 LINE L1 -63 6228 6201 23 33 0 0 chr15 18518493 18518523 -67177231 + AT_rich Low_complexity Low_complexity 1 30 0 30 27 0 0 chr15 18518541 18518578 -67177176 + AT_rich Low_complexity Low_complexity 1 37 0 2566 67 0 0 chr15 18518704 18519002 -67176752 - AluSg SINE Alu -12 298 1 350 265 146 32 chr15 18519113 18519298 -67176456 + L1MC4a LINE L1 5695 5900 -1908 198 279 128 0 chr15 18520020 18520106 -67175648 - MIR SINE MIR -57 205 109 407 227 58 71 chr15 18520402 18520556 -67175198 - MIR SINE MIR -51 211 60 1650 175 16 30 chr15 18521337 18521640 -67174114 - AluJo SINE Alu -13 299 1 554 260 166 18 chr15 18521962 18522416 -67173338 + L2 LINE L2 2738 3253 -19 360 115 33 0 chr15 18522686 18522747 -67173007 + MIR SINE MIR 14 76 -186 641 270 70 64 chr15 18522747 18523241 -67172513 - MLT1H1 LTR MaLR -8 541 64 683 192 53 20 chr15 18523314 18523465 -67172289 + MIR SINE MIR 67 222 -40 1996 134 58 12 chr15 18524890 18525233 -67170521 - MER46B DNA MER2_type -2 234 1 22 0 0 0 chr15 18526304 18526326 -67169428 + AT_rich Low_complexity Low_complexity 1 22 0 814 86 0 19 chr15 18526440 18526545 -67169209 + AluSq/x SINE Alu 1 103 -209 1416 109 35 5 chr15 18526639 18526841 -67168913 + AluSc SINE Alu 93 300 -9 880 110 0 52 chr15 18527010 18527146 -67168608 - FLAM_C SINE Alu -4 129 1 381 296 65 9 chr15 18528202 18528418 -67167336 + L1MC4a LINE L1 5703 5930 -1878 1919 119 20 13 chr15 18529273 18529575 -67166179 - AluSq SINE Alu -8 305 2 358 304 40 67 chr15 18529718 18529942 -67165812 + L2 LINE L2 2966 3183 -89 352 209 363 16 chr15 18530489 18530671 -67165083 - MIR SINE MIR -5 257 13 396 259 43 36 chr15 18531093 18531232 -67164522 + MIR3 SINE MIR 4 143 -65 209 342 76 0 chr15 18531693 18531772 -67163982 - MIR SINE MIR -109 153 69 641 257 62 40 chr15 18532863 18533089 -67162665 + MIR SINE MIR 7 237 -25 1841 141 18 0 chr15 18533480 18533764 -67161990 + AluJo SINE Alu 1 289 -23 617 270 89 21 chr15 18533956 18534193 -67161561 - MIR SINE MIR -3 259 7 213 297 81 36 chr15 18534337 18534448 -67161306 + MIR3 SINE MIR 4 119 -89 263 227 67 0 chr15 18534775 18534850 -67160904 - MER116 DNA Mariner 0 80 1 2231 97 7 0 chr15 18535006 18535295 -67160459 + AluSg SINE Alu 1 291 -19 883 119 0 16 chr15 18535363 18535489 -67160265 - FLAM_C SINE Alu -9 124 1 1764 152 15 0 chr15 18535778 18536048 -67159706 + AluJo SINE Alu 1 274 -38 332 206 44 0 chr15 18536050 18536118 -67159636 - L1MCa LINE L1 -4362 2064 1994 2326 110 0 0 chr15 18536119 18536427 -67159327 + AluSx SINE Alu 1 308 -4 261 301 45 53 chr15 18537771 18537904 -67157850 + MIR3 SINE MIR 12 143 -65 306 0 0 0 chr15 18538033 18538067 -67157687 + (CCCTAA)n Simple_repeat Simple_repeat 3 36 0 597 294 76 9 chr15 18538121 18538332 -67157422 + MIR SINE MIR 38 262 0 180 171 49 24 chr15 18539280 18539321 -67156433 - L3b LINE CR1 -106 1477 1436 2318 105 0 25 chr15 18539737 18540051 -67155703 + AluSx SINE Alu 1 306 -6 668 263 50 0 chr15 18540216 18540395 -67155359 - L3 LINE CR1 -26 1551 1364 742 201 15 8 chr15 18540412 18540546 -67155208 - AluJo SINE Alu -176 136 2 301 364 15 8 chr15 18540550 18540682 -67155072 - L3 LINE CR1 -224 1353 1221 309 360 42 33 chr15 18541346 18541560 -67154194 - L3b LINE CR1 -72 1511 1296 609 289 93 36 chr15 18542465 18542690 -67153064 + MIR SINE MIR 23 260 -2 2019 121 28 14 chr15 18542899 18543188 -67152566 + AluJb SINE Alu 1 293 -19 313 281 120 86 chr15 18543316 18543675 -67152079 + L1MEd LINE L1 814 1184 -4935 258 312 115 0 chr15 18544089 18544246 -67151508 + L2 LINE L2 1821 1995 -1319 473 232 141 15 chr15 18544289 18544709 -67151045 + MLT1K LTR MaLR 40 580 -8 453 258 131 12 chr15 18544842 18545086 -67150668 + L2 LINE L2 2217 2489 -825 245 296 37 93 chr15 18545071 18545233 -67150521 + L2 LINE L2 2966 3118 -154 * 2000 125 28 14 chr15 18545818 18546107 -67149647 - AluJb SINE Alu -19 293 1 525 283 40 77 chr15 18546312 18546431 -67149323 - MIR SINE MIR -2 260 153 2883 10 0 3 chr15 18546431 18546743 -67149011 - AluYa5 SINE Alu 0 311 1 525 283 40 77 chr15 18546743 18546870 -67148884 - MIR SINE MIR -109 153 23 394 291 25 0 chr15 18548418 18548552 -67147202 + L1ME LINE L1 5474 5607 -514 2108 138 3 3 chr15 18548560 18548864 -67146890 + AluJb SINE Alu 2 305 -7 217 265 66 99 chr15 18549005 18549156 -67146598 - MIR3 SINE MIR -40 168 23 563 191 119 0 chr15 18550262 18550402 -67145352 - MIR SINE MIR -18 244 89 2762 35 0 13 chr15 18550621 18550934 -67144820 + AluY SINE Alu 1 309 -2 2212 99 27 7 chr15 18551196 18551490 -67144264 + AluSx SINE Alu 1 300 -12 304 282 92 30 chr15 18551681 18551812 -67143942 - MIR SINE MIR -40 222 84 753 212 151 14 chr15 18551825 18552117 -67143637 - L1ME4a LINE L1 -111 6010 5679 2428 84 3 0 chr15 18552181 18552478 -67143276 - AluSx SINE Alu -9 303 6 230 273 15 0 chr15 18552979 18553045 -67142709 + MER103 DNA DNA 99 165 -1 915 330 119 58 chr15 18553175 18554149 -67141605 + L1ME4a LINE L1 3941 4854 -1292 5485 62 9 7 chr15 18554149 18554821 -67140933 + SVA Other Other 714 1386 0 2144 125 3 7 chr15 18554824 18555127 -67140627 + AluSx SINE Alu 1 302 -10 915 330 119 58 chr15 18555127 18555371 -67140383 + L1ME4a LINE L1 4855 5083 -1063 2566 75 0 0 chr15 18555371 18555676 -67140078 + AluY SINE Alu 1 305 -6 915 330 119 58 chr15 18555676 18555781 -67139973 + L1ME4a LINE L1 5083 5403 -743 1875 127 0 35 chr15 18555832 18556115 -67139639 + AluJo SINE Alu 13 285 -27 546 226 128 116 chr15 18556179 18556290 -67139464 + L1ME4a LINE L1 5524 5632 -489 1951 150 3 3 chr15 18556290 18556576 -67139178 - AluJb SINE Alu -26 286 1 546 226 128 116 chr15 18556576 18556862 -67138892 + L1ME4a LINE L1 5632 5926 -195 312 209 30 0 chr15 18556862 18556929 -67138825 - L3 LINE CR1 -891 686 618 480 243 18 101 chr15 18557013 18557206 -67138548 - MER5A DNA MER1_type 0 189 3 216 214 43 29 chr15 18557424 18557494 -67138260 + (CCCA)n Simple_repeat Simple_repeat 1 71 0 341 268 110 0 chr15 18557697 18557861 -67137893 + L2 LINE L2 1814 1995 -1319 473 232 141 15 chr15 18557904 18558324 -67137430 + MLT1K LTR MaLR 40 580 -8 453 258 131 12 chr15 18558457 18558701 -67137053 + L2 LINE L2 2217 2489 -825 245 296 37 93 chr15 18558686 18558848 -67136906 + L2 LINE L2 2966 3118 -154 * 218 394 61 15 chr15 18559193 18559391 -67136363 - L3 LINE CR1 -1295 282 76 972 135 0 0 chr15 18559960 18560093 -67135661 - FLAM_C SINE Alu 0 133 1 881 178 43 0 chr15 18560287 18560450 -67135304 - L1MB7 LINE L1 -16 6168 5999 289 100 83 33 chr15 18560451 18560511 -67135243 - L1M4 LINE L1 -1202 4944 4882 * 505 154 89 0 chr15 18560510 18560633 -67135121 - L1M4 LINE L1 -1876 4270 4137 2410 62 10 0 chr15 18560772 18561060 -67134694 + AluSp SINE Alu 5 295 -18 22 35 0 0 chr15 18564059 18564088 -67131666 + GC_rich Low_complexity Low_complexity 1 29 0 2425 98 0 0 chr15 18564811 18565118 -67130636 - AluSx SINE Alu -5 307 1 445 216 111 76 chr15 18565234 18565405 -67130349 + MER5A DNA MER1_type 7 183 -6 509 235 0 0 chr15 18565450 18565548 -67130206 - MER5A DNA MER1_type -83 106 9 348 321 113 6 chr15 18565550 18565709 -67130045 + MIR SINE MIR 19 194 -68 321 342 52 52 chr15 18565781 18565974 -67129780 + L1M4 LINE L1 4990 5182 -964 3294 125 10 0 chr15 18565990 18566510 -67129244 + L1MC1 LINE L1 5600 6124 -209 765 159 18 31 chr15 18566533 18566696 -67129058 - L1MC1 LINE L1 -19 6314 6154 1911 187 13 26 chr15 18566713 18567369 -67128385 + L1ME LINE L1 4971 5625 -541 494 233 1 1 chr15 18567369 18567503 -67128251 + L1MA10 LINE L1 5986 6278 -47 1224 138 38 5 chr15 18567504 18567714 -67128040 - MER2 DNA MER2_type -5 340 124 437 90 82 179 chr15 18567745 18567879 -67127875 - MER2 DNA MER2_type -210 135 15 23 0 0 0 chr15 18568690 18568713 -67127041 + AT_rich Low_complexity Low_complexity 1 23 0 3291 132 48 26 chr15 18568864 18568912 -67126842 + L1MB2 LINE L1 5564 5609 -562 1348 187 33 27 chr15 18568912 18569211 -67126543 + AluSx SINE Alu 1 301 -11 3291 132 48 26 chr15 18569211 18569380 -67126374 + L1MB2 LINE L1 5609 5773 -398 186 43 0 0 chr15 18569380 18569403 -67126351 + (CA)n Simple_repeat Simple_repeat 2 24 0 3291 132 48 26 chr15 18569403 18569769 -67125985 + L1MB2 LINE L1 5773 6161 -10 259 286 88 20 chr15 18569829 18569976 -67125778 + L1ME4a LINE L1 5963 6119 -2 274 101 0 0 chr15 18570123 18570170 -67125584 - L1MA2 LINE L1 0 6305 6259 265 136 0 0 chr15 18570182 18570226 -67125528 - L1MA3 LINE L1 -3 6302 6259 212 364 67 42 chr15 18570234 18570399 -67125355 - L3b LINE CR1 -253 1330 1162 1092 253 69 16 chr15 18570783 18571147 -67124607 + MLT1J LTR MaLR 44 426 -85 1714 205 104 60 chr15 18571309 18571864 -67123890 + MLT1G LTR MaLR 11 590 0 348 264 28 28 chr15 18571885 18571991 -67123763 - MLT1J LTR MaLR -64 447 342 * 450 186 79 26 chr15 18571981 18572154 -67123600 + MLT1J LTR MaLR 238 475 -36 261 361 39 29 chr15 18572178 18572383 -67123371 - L2 LINE L2 -1015 2299 2093 280 308 58 25 chr15 18572557 18572677 -67123077 + L2 LINE L2 3190 3313 0 344 284 29 62 chr15 18572694 18572902 -67122852 - L2 LINE L2 -1292 2022 1822 188 326 35 35 chr15 18573093 18573179 -67122575 + L2 LINE L2 3136 3221 -92 332 341 63 8 chr15 18573879 18574005 -67121749 - MER5A DNA MER1_type -7 182 50 1981 81 88 15 chr15 18574945 18575218 -67120536 + AluSx SINE Alu 1 293 -19 214 304 0 0 chr15 18576005 18576074 -67119680 + (CA)n Simple_repeat Simple_repeat 1 69 0 255 298 53 18 chr15 18576074 18576188 -67119566 + L2 LINE L2 3155 3272 0 529 280 47 57 chr15 18576987 18577180 -67118574 + MIR SINE MIR 20 210 -52 2035 121 17 27 chr15 18578461 18578759 -67116995 - AluJb SINE Alu -16 296 2 222 242 97 0 chr15 18578809 18578871 -67116883 + MIR SINE MIR 118 185 -77 357 163 0 113 chr15 18580405 18580485 -67115269 + MIR SINE MIR 191 261 -1 425 294 43 37 chr15 18580526 18580689 -67115065 - MIR SINE MIR -91 171 8 230 109 43 0 chr15 18582637 18582683 -67113071 + C-rich Low_complexity Low_complexity 5 52 0 186 43 0 0 chr15 18582682 18582705 -67113049 + (T)n Simple_repeat Simple_repeat 1 23 0 * 275 296 9 37 chr15 18583485 18583593 -67112161 + L2 LINE L2 3166 3270 -2 181 188 0 0 chr15 18584013 18584045 -67111709 - L3 LINE CR1 -6 1571 1540 862 282 118 0 chr15 18584055 18584402 -67111352 + LTR16B LTR ERVL 3 390 -74 972 241 21 33 chr15 18585132 18585373 -67110381 + MIR SINE MIR 4 241 -21 189 325 25 74 chr15 18585275 18585438 -67110316 - MIR SINE MIR -105 157 3 * 443 299 187 0 chr15 18586007 18586194 -67109560 + MIR SINE MIR 7 228 -34 811 176 0 0 chr15 18586473 18586604 -67109150 - FLAM_C SINE Alu -2 131 1 25 0 0 0 chr15 18586606 18586631 -67109123 + AT_rich Low_complexity Low_complexity 1 25 0 769 151 54 38 chr15 18586645 18586830 -67108924 + ORSL DNA AcHobo 66 253 -22 301 333 9 0 chr15 18587065 18587176 -67108578 - MIR SINE MIR -81 181 70 253 324 48 9 chr15 18587686 18587791 -67107963 - MIR3 SINE MIR -9 199 91 2286 125 0 3 chr15 18588006 18588319 -67107435 + AluJb SINE Alu 1 312 0 348 318 126 28 chr15 18589258 18589472 -67106282 + MIR SINE MIR 25 259 -3 195 229 0 0 chr15 18589654 18589689 -67106065 - L2 LINE L2 -86 3227 3193 441 231 8 17 chr15 18590247 18590364 -67105390 + AluJb SINE Alu 194 309 -3 340 313 130 21 chr15 18591326 18591518 -67104236 + MIR SINE MIR 47 259 -3 186 229 0 0 chr15 18591700 18591735 -67104019 - L2 LINE L2 -86 3227 3193 426 339 16 26 chr15 18592333 18592522 -67103232 - MIR SINE MIR 0 262 76 2123 197 40 33 chr15 18592541 18592760 -67102994 + L1MC/D LINE L1 4844 5060 -1171 2128 101 14 0 chr15 18592760 18593072 -67102682 + AluSx SINE Alu 1 316 0 2123 197 40 33 chr15 18593072 18593495 -67102259 + L1MC/D LINE L1 5060 5488 -743 276 309 147 0 chr15 18594371 18594507 -67101247 - MER5A DNA MER1_type -26 163 8 2017 143 3 7 chr15 18595688 18595982 -67099772 - AluJb SINE Alu -19 293 1 1422 153 164 11 chr15 18596017 18596279 -67099475 + AluSg1 SINE Alu 1 302 -7 1438 111 5 5 chr15 18597253 18597451 -67098303 - AluSg/x SINE Alu -15 297 100 331 112 11 45 chr15 18597853 18597942 -67097812 + (TTCC)n Simple_repeat Simple_repeat 1 86 0 2076 120 58 0 chr15 18598020 18598312 -67097442 + AluSx SINE Alu 1 309 -3 362 194 0 21 chr15 18598329 18598422 -67097332 + GA-rich Low_complexity Low_complexity 4 94 0 328 281 116 0 chr15 18599408 18599529 -67096225 + L2 LINE L2 3179 3313 0 498 285 83 16 chr15 18599660 18599853 -67095901 - MIR SINE MIR -6 256 51 442 272 235 9 chr15 18603253 18603602 -67092152 + L2 LINE L2 2431 2858 -456 268 269 0 0 chr15 18603647 18603714 -67092040 + (CA)n Simple_repeat Simple_repeat 1 67 0 338 275 72 14 chr15 18603756 18603894 -67091860 + L2 LINE L2 2932 3077 -195 1881 149 6 37 chr15 18605434 18605756 -67089998 + AluJb SINE Alu 1 312 0 314 296 12 0 chr15 18607511 18607592 -67088162 + (CA)n Simple_repeat Simple_repeat 2 83 0 368 338 40 54 chr15 18607776 18607879 -67087875 + L2 LINE L2 2999 3102 -170 2214 108 13 3 chr15 18607879 18608185 -67087569 - AluSq SINE Alu -4 309 1 368 338 40 54 chr15 18608185 18608359 -67087395 + L2 LINE L2 3102 3272 0 315 211 13 26 chr15 18609554 18609630 -67086124 - L2 LINE L2 -19 3253 3179 309 111 0 0 chr15 18610234 18610288 -67085466 - Alu SINE Alu 0 302 249 1986 138 7 10 chr15 18610330 18610627 -67085127 - AluSx SINE Alu -16 296 1 202 311 108 27 chr15 18611249 18611397 -67084357 - L3b LINE CR1 -135 1448 1289 * 405 343 87 6 chr15 18611385 18611557 -67084197 - MIR SINE MIR 0 262 77 367 342 95 5 chr15 18612947 18613137 -67082617 - MIR SINE MIR -35 227 21 2752 94 29 0 chr15 18615565 18616010 -67079744 + MER1A DNA MER1_type 32 529 0 307 229 0 15 chr15 18616032 18616141 -67079613 - HsTC2 DNA Tc2 -73 1825 1 2822 175 70 5 chr15 18616157 18617103 -67078651 - MER52A LTR ERV1 0 1755 619 3527 126 6 2 chr15 18618951 18619476 -67076278 - MER1A DNA MER1_type 0 527 1 225 305 0 110 chr15 18619564 18619718 -67076036 - L2 LINE L2 -219 3053 2917 182 360 13 0 chr15 18620630 18620705 -67075049 - L2 LINE L2 -15 3257 3182 2492 78 13 0 chr15 18621570 18621877 -67073877 + AluY SINE Alu 1 311 0 4018 85 16 5 chr15 18621884 18622448 -67073306 - LTR19B LTR ERV1 -10 570 1 417 368 15 5 chr15 18622516 18622720 -67073034 + L1M4 LINE L1 4981 5186 -960 501 357 107 10 chr15 18622767 18623058 -67072696 + L1ME LINE L1 4664 4982 -1164 298 282 46 30 chr15 18623110 18623241 -67072513 + L1ME LINE L1 5412 5544 -577 2297 133 0 0 chr15 18623340 18623648 -67072106 + AluSx SINE Alu 1 308 -4 499 282 60 0 chr15 18624114 18624263 -67071491 + L2 LINE L2 2569 2726 -588 188 304 221 9 chr15 18624350 18624672 -67071082 + L2 LINE L2 2848 3237 -76 226 281 31 0 chr15 18624674 18624738 -67071016 + L1ME LINE L1 5728 5793 -377 499 233 275 0 chr15 18624773 18624962 -67070792 - MIR SINE MIR -12 250 10 2280 104 0 0 chr15 18625018 18625369 -67070385 - AluSx SINE Alu 0 351 1 1841 161 7 14 chr15 18625748 18626058 -67069696 - AluJb SINE Alu 0 308 1 597 274 132 0 chr15 18626274 18626478 -67069276 + MIR SINE MIR 3 233 -29 1528 225 15 45 chr15 18627361 18627625 -67068129 - L1ME1 LINE L1 -162 6004 5755 1841 149 27 30 chr15 18627625 18627926 -67067828 - AluJb SINE Alu -6 306 7 1528 225 15 45 chr15 18627926 18628061 -67067693 - L1ME1 LINE L1 -411 5755 5617 208 333 17 17 chr15 18628130 18628250 -67067504 + CT-rich Low_complexity Low_complexity 5 124 0 2119 154 76 2 chr15 18628526 18628923 -67066831 + MSTB LTR MaLR 1 426 0 226 199 32 19 chr15 18629619 18629775 -67065979 + (TG)n Simple_repeat Simple_repeat 1 158 0 495 259 9 0 chr15 18630774 18630882 -67064872 + MER81 DNA DNA 2 110 -4 252 214 86 14 chr15 18631210 18631280 -67064474 + MLT1K LTR MaLR 141 215 -373 670 250 83 50 chr15 18631357 18631597 -67064157 + MLT1K LTR MaLR 316 563 -25 269 286 0 58 chr15 18632599 18632753 -67063001 - L1ME3A LINE L1 -231 5939 5795 334 138 31 0 chr15 18632795 18632860 -67062894 + MER52A LTR ERV1 1 67 -1688 245 138 103 0 chr15 18633887 18633945 -67061809 - Charlie3 DNA MER1_type -2624 86 23 771 282 37 6 chr15 18634056 18634374 -67061380 - L1ME3A LINE L1 -514 5648 5320 473 354 88 30 chr15 18634444 18634806 -67060948 + L1ME4a LINE L1 5580 5962 -159 327 326 0 0 chr15 18634776 18634862 -67060892 - L1MC4 LINE L1 -1344 6698 6613 * 681 301 74 39 chr15 18634889 18635322 -67060432 + L1ME4a LINE L1 4300 4758 -1388 807 125 8 47 chr15 18635325 18635453 -67060301 + FLAM_C SINE Alu 1 123 -20 285 75 0 0 chr15 18635460 18635500 -67060254 + (CA)n Simple_repeat Simple_repeat 2 41 0 342 284 123 42 chr15 18635752 18635988 -67059766 + L1ME4a LINE L1 5094 5348 -798 673 250 35 12 chr15 18636010 18636182 -67059572 - MER5B DNA MER1_type -2 176 1 623 285 47 19 chr15 18636215 18636471 -67059283 + L1ME4a LINE L1 5401 5663 -2145 330 251 113 69 chr15 18637404 18637723 -67058031 + L1ME4a LINE L1 5789 6121 0 197 329 14 14 chr15 18637801 18637874 -67057880 - MIR SINE MIR -6 256 184 294 301 238 30 chr15 18638168 18638437 -67057317 + L3 LINE CR1 1250 1574 -3 575 228 42 104 chr15 18638938 18639197 -67056557 + MIR SINE MIR 20 262 0 635 287 171 22 chr15 18639306 18639783 -67055971 - L2 LINE L2 -1 3271 2866 2064 68 1 1 chr15 18639783 18640063 -67055691 + L1PA4 LINE L1 5874 6155 0 2052 56 0 4 chr15 18639796 18640063 -67055691 + L1PA5 LINE L1 5889 6154 0 635 287 171 22 chr15 18640063 18640268 -67055486 - L2 LINE L2 -406 2866 2487 1939 288 121 17 chr15 18640857 18642021 -67053733 + L2 LINE L2 2010 3312 -1 500 91 13 0 chr15 18642326 18642403 -67053351 - MSTC LTR MaLR 0 428 351 563 205 54 0 chr15 18642422 18642534 -67053220 - AluSq/x SINE Alu -193 119 2 1696 171 59 6 chr15 18642535 18642857 -67052897 - MSTD LTR MaLR -56 340 2 336 236 55 45 chr15 18643128 18643238 -67052516 + L1ME4a LINE L1 5770 5880 -241 2033 172 9 0 chr15 18643282 18643625 -67052129 + MER7A DNA MER2_type 3 346 0 25 0 0 0 chr15 18643710 18643735 -67052019 + AT_rich Low_complexity Low_complexity 1 25 0 520 258 68 0 chr15 18643978 18644110 -67051644 - MIR SINE MIR -109 153 13 984 181 28 0 chr15 18644556 18644738 -67051016 - MSTD LTR MaLR -198 198 12 215 295 0 0 chr15 18645352 18645413 -67050341 - MIR SINE MIR -29 233 173 397 162 54 0 chr15 18645452 18645526 -67050228 + MIR SINE MIR 76 153 -109 21 36 0 0 chr15 18646661 18646689 -67049065 + AT_rich Low_complexity Low_complexity 1 28 0 1994 151 0 0 chr15 18646890 18647174 -67048580 + AluJo SINE Alu 1 284 -28 210 37 0 0 chr15 18648044 18648071 -67047683 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 221 282 28 14 chr15 18649595 18649666 -67046088 + GA-rich Low_complexity Low_complexity 3 74 0 1846 128 95 0 chr15 18649696 18649970 -67045784 - AluSx SINE Alu -12 300 1 394 275 33 0 chr15 18651674 18651765 -67043989 + MIR SINE MIR 94 187 -75 294 273 45 0 chr15 18652956 18653044 -67042710 - MLT1K LTR MaLR 0 588 497 455 297 47 45 chr15 18653509 18653808 -67041946 + L1ME1 LINE L1 5629 5922 -244 * 2157 171 89 9 chr15 18653588 18654016 -67041738 + L1PA16 LINE L1 5703 6164 -2 24 0 0 0 chr15 18654124 18654148 -67041606 + AT_rich Low_complexity Low_complexity 1 24 0 922 211 0 0 chr15 18654148 18654304 -67041450 - FRAM SINE Alu -23 153 1 1250 258 56 15 chr15 18654345 18654737 -67041017 - L1ME3A LINE L1 -17 6153 5746 659 185 50 0 chr15 18654919 18655038 -67040716 + FLAM_C SINE Alu 1 125 -18 363 349 42 6 chr15 18655360 18655526 -67040228 - MIR SINE MIR -3 259 88 370 323 0 0 chr15 18655909 18656005 -67039749 - MER81 DNA DNA 0 114 19 428 309 100 14 chr15 18656216 18656426 -67039328 + MIR SINE MIR 23 250 -12 1644 191 10 19 chr15 18656631 18656940 -67038814 + AluJb SINE Alu 1 306 -6 503 250 103 0 chr15 18657116 18657272 -67038482 - L1ME3A LINE L1 -244 5926 5755 335 277 6 25 chr15 18657808 18657968 -67037786 - MLT1K LTR MaLR -360 228 41 1809 177 17 0 chr15 18658005 18658299 -67037455 + AluJo SINE Alu 4 302 -10 279 281 74 25 chr15 18658322 18658443 -67037311 + MIR3 SINE MIR 78 204 -4 564 221 145 95 chr15 18658793 18659055 -67036699 + MLT1E1 LTR MaLR 304 578 -76 1187 204 40 27 chr15 18659193 18659227 -67036527 - MLT2D LTR ERVL 0 414 382 222 37 0 0 chr15 18659227 18659254 -67036500 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 408 20 0 0 chr15 18659253 18659302 -67036452 + (TG)n Simple_repeat Simple_repeat 1 49 0 1187 204 40 27 chr15 18659254 18659318 -67036436 - MLT2D LTR ERVL -32 382 320 2311 116 10 0 chr15 18659318 18659621 -67036133 - AluSq SINE Alu -7 306 1 1187 204 40 27 chr15 18659621 18659868 -67035886 - MLT2D LTR ERVL -94 320 112 658 222 0 0 chr15 18659872 18660007 -67035747 - AluJo SINE Alu -176 136 2 401 203 29 0 chr15 18660011 18660124 -67035630 - MLT2C1 LTR ERVL -310 87 1 325 270 141 49 chr15 18660152 18660315 -67035439 - L1M4 LINE L1 -2175 3971 3794 1204 234 51 56 chr15 18660899 18661449 -67034305 - MER77 LTR ERV1 -4 601 54 1439 279 47 18 chr15 18661577 18661696 -67034058 - MER90 LTR ERV1 0 614 500 261 0 0 0 chr15 18661696 18661725 -67034029 + (TG)n Simple_repeat Simple_repeat 1 29 0 1439 279 47 18 chr15 18661725 18662111 -67033643 - MER90 LTR ERV1 -114 500 94 228 330 41 0 chr15 18662151 18662248 -67033506 + MIR SINE MIR 118 218 -44 1872 156 12 38 chr15 18662513 18662833 -67032921 + AluJb SINE Alu 1 312 0 2413 228 56 1 chr15 18662843 18663506 -67032248 + L1ME LINE L1 3763 4461 -1685 254 169 15 0 chr15 18663506 18663571 -67032183 + GA-rich Low_complexity Low_complexity 3 68 0 1948 142 30 17 chr15 18668262 18668558 -67027196 - AluJb SINE Alu -12 300 1 250 293 24 0 chr15 18668662 18668744 -67027010 + MER117 DNA MER1_type 4 87 -110 260 298 137 38 chr15 18668918 18669049 -67026705 + MER5A DNA MER1_type 45 188 -1 21 0 0 0 chr15 18670132 18670153 -67025601 + AT_rich Low_complexity Low_complexity 1 21 0 1295 182 0 0 chr15 18670194 18670397 -67025357 - AluJb SINE Alu -23 289 87 340 280 48 56 chr15 18670734 18670859 -67024895 + L1ME LINE L1 4541 4664 -1482 1861 162 0 0 chr15 18670864 18671142 -67024612 + AluSx SINE Alu 1 278 -34 326 123 18 0 chr15 18671143 18671200 -67024554 + G-rich Low_complexity Low_complexity 3 60 0 243 0 0 0 chr15 18671201 18671228 -67024526 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 603 295 70 49 chr15 18671231 18671719 -67024035 + L1ME LINE L1 4661 5158 -988 725 277 78 35 chr15 18671753 18672179 -67023575 + L1ME LINE L1 5259 5702 -468 2823 138 6 4 chr15 18672228 18672727 -67023027 + L1 LINE L1 3374 3873 -2273 2582 111 5 0 chr15 18672757 18673128 -67022626 + MER66A-int LTR ERV1 6304 6676 0 1384 206 35 12 chr15 18673135 18673543 -67022211 + MER66A LTR ERV1 27 478 0 898 192 17 0 chr15 18674280 18674452 -67021302 - MIR SINE MIR -71 191 17 1161 173 93 3 chr15 18675174 18675463 -67020291 - MER33 DNA MER1_type 0 324 10 187 263 79 13 chr15 18675720 18675796 -67019958 + MIR SINE MIR 118 198 -64 379 304 99 22 chr15 18675838 18676019 -67019735 - MIR SINE MIR -32 230 36 2450 94 0 0 chr15 18677178 18677485 -67018269 - AluSq SINE Alu -6 307 1 243 0 0 0 chr15 18677657 18677684 -67018070 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 27 62 0 0 chr15 18677746 18677794 -67017960 + AT_rich Low_complexity Low_complexity 1 48 0 273 287 150 49 chr15 18677874 18678260 -67017494 - L2 LINE L2 -170 3143 2716 376 250 77 58 chr15 18680838 18680994 -67014760 - MIR SINE MIR -39 223 65 2223 117 3 3 chr15 18681822 18682129 -67013625 + AluSq SINE Alu 1 307 -6 209 363 29 0 chr15 18682217 18682319 -67013435 - MIR SINE MIR -30 232 128 885 200 47 0 chr15 18685324 18685514 -67010240 + MIR SINE MIR 18 216 -46 233 346 26 13 chr15 18686107 18686263 -67009491 + MER65A LTR ERV1 175 332 -113 502 225 45 62 chr15 18686378 18686403 -67009351 - MIR SINE MIR -42 220 196 7702 60 10 4 chr15 18686403 18687404 -67008350 + LTR13 LTR ERVK 1 1007 0 502 225 45 62 chr15 18687404 18687556 -67008198 - MIR SINE MIR -66 196 46 22 0 0 0 chr15 18690712 18690734 -67005020 + AT_rich Low_complexity Low_complexity 1 22 0 1703 173 10 30 chr15 18690743 18691038 -67004716 + AluJo SINE Alu 1 289 -23 1386 194 55 10 chr15 18691778 18692088 -67003666 - MER33 DNA MER1_type 0 324 1 692 324 52 34 chr15 18692761 18693085 -67002669 + MLT1K LTR MaLR 61 390 -198 1741 248 205 6 chr15 18693129 18693665 -67002089 + MER69 DNA AcHobo 1 643 -583 1418 270 165 6 chr15 18693820 18694362 -67001392 + MLT1G LTR MaLR 1 590 0 949 153 40 201 chr15 18694362 18694705 -67001049 + MER69 DNA AcHobo 2045 2291 -235 1866 153 0 0 chr15 18694705 18695006 -67000748 - AluSx SINE Alu -5 307 7 949 153 40 201 chr15 18695006 18695138 -67000616 + MER69 DNA AcHobo 2291 2443 -83 234 264 0 0 chr15 18695263 18695316 -67000438 + MER69 DNA AcHobo 214 266 -960 363 230 82 22 chr15 18695323 18695458 -67000296 - MIR SINE MIR -89 173 31 265 204 0 0 chr15 18696019 18696068 -66999686 - L2 LINE L2 0 3313 3265 183 42 0 0 chr15 18696623 18696647 -66999107 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr15 18697841 18697865 -66997889 + AT_rich Low_complexity Low_complexity 1 24 0 2249 97 0 10 chr15 18698589 18698899 -66996855 + AluSx SINE Alu 1 307 -5 2300 94 0 0 chr15 18700261 18700559 -66995195 + AluSx SINE Alu 1 298 -14 2061 104 0 0 chr15 18701118 18701407 -66994347 + AluSq SINE Alu 1 289 -24 1658 153 35 11 chr15 18701534 18701821 -66993933 + AluJo SINE Alu 1 294 -18 2014 122 3 7 chr15 18702221 18702525 -66993229 + AluSq SINE Alu 3 305 -8 1008 248 26 26 chr15 18703070 18703373 -66992381 + L1ME3 LINE L1 5860 6162 0 232 310 0 0 chr15 18703546 18703604 -66992150 + HAL1 LINE L1 420 477 -2030 1289 221 26 145 chr15 18703607 18704084 -66991670 + HAL1 LINE L1 549 1081 -1426 2718 152 12 0 chr15 18704084 18704513 -66991241 - MER57B LTR ERV1 0 434 1 1289 221 26 145 chr15 18704513 18704734 -66991020 + HAL1 LINE L1 1081 1151 -1356 1844 169 0 6 chr15 18704734 18705047 -66990707 + AluJb SINE Alu 1 311 -1 1289 221 26 145 chr15 18705047 18705111 -66990643 + HAL1 LINE L1 1151 1221 -1286 311 212 12 0 chr15 18705125 18705210 -66990544 + CT-rich Low_complexity Low_complexity 1 86 0 244 197 16 0 chr15 18705210 18705271 -66990483 - FAM SINE Alu 0 179 118 978 252 132 48 chr15 18705284 18705725 -66990029 + HAL1 LINE L1 1233 1710 -797 210 94 31 0 chr15 18705748 18705780 -66989974 + MER5A DNA MER1_type 43 75 -114 * 425 261 76 0 chr15 18705776 18705868 -66989886 - MER5A DNA MER1_type -83 106 8 618 235 130 43 chr15 18705871 18706439 -66989315 + HAL1 LINE L1 1692 2359 -148 1932 122 31 0 chr15 18706439 18706727 -66989027 + AluSg SINE Alu 1 297 -13 618 235 130 43 chr15 18706727 18706854 -66988900 + HAL1 LINE L1 2359 2474 -33 2227 105 0 0 chr15 18706867 18707161 -66988593 + AluSp SINE Alu 1 294 -19 415 226 69 0 chr15 18707511 18707613 -66988141 - MLT1K LTR MaLR 0 588 480 243 215 283 62 chr15 18707624 18707762 -66987992 + MIR SINE MIR 47 153 -109 2061 152 131 8 chr15 18707762 18708143 -66987611 - MSTA LTR MaLR 0 428 1 243 215 283 62 chr15 18708143 18708181 -66987573 + MIR SINE MIR 153 262 0 2298 82 0 7 chr15 18708181 18708487 -66987267 + AluY SINE Alu 2 305 -6 609 287 76 32 chr15 18708499 18708813 -66986941 + L1MC/D LINE L1 1340 1690 -886 434 293 74 58 chr15 18709177 18709337 -66986417 + L1MC/D LINE L1 2053 2220 -4176 2032 128 0 0 chr15 18709337 18709635 -66986119 + AluSx SINE Alu 1 298 -14 434 293 74 58 chr15 18709635 18709716 -66986038 + L1MC/D LINE L1 2220 2298 -4098 741 278 70 73 chr15 18709790 18710458 -66985296 + L1MC/D LINE L1 2279 2944 -3271 3620 147 75 168 chr15 18710474 18711029 -66984725 - L1MC3 LINE L1 -6 7779 7174 367 238 0 48 chr15 18711029 18711134 -66984620 - MLT1F1 LTR MaLR -433 134 35 3620 147 75 168 chr15 18711134 18711357 -66984397 - L1MC3 LINE L1 -611 7174 6932 2176 91 0 20 chr15 18711357 18711655 -66984099 - AluSx SINE Alu -20 292 1 3620 147 75 168 chr15 18711655 18712175 -66983579 - L1MC3 LINE L1 -853 6932 6506 2089 125 0 25 chr15 18712208 18712527 -66983227 + AluSx SINE Alu 1 311 -1 268 323 31 21 chr15 18712658 18712850 -66982904 + L1MC/D LINE L1 4562 4755 -1460 401 260 136 39 chr15 18712878 18713079 -66982675 + L1MC/D LINE L1 4808 4988 -1362 1815 158 7 0 chr15 18713079 18713370 -66982384 - AluJb SINE Alu -19 293 1 401 260 136 39 chr15 18713370 18713843 -66981911 + L1MC/D LINE L1 4988 5555 -795 1478 180 36 36 chr15 18714381 18714715 -66981039 - MLT2D LTR ERVL -9 405 64 1333 209 90 61 chr15 18714733 18715039 -66980715 - LTR16A1 LTR ERVL 0 457 133 2011 173 73 5 chr15 18715039 18715409 -66980345 + MLT2C1 LTR ERVL 1 395 -2 1333 209 90 61 chr15 18715409 18715546 -66980208 - LTR16A1 LTR ERVL -324 133 1 1224 307 29 50 chr15 18715712 18716291 -66979463 - ERVL LTR ERVL -418 5346 4780 964 294 48 3 chr15 18716504 18716813 -66978941 - ERVL LTR ERVL -1274 4490 4168 315 49 0 0 chr15 18717241 18717282 -66978472 + (CA)n Simple_repeat Simple_repeat 2 42 0 469 287 80 39 chr15 18717526 18717718 -66978036 + MIR SINE MIR 42 248 -14 1548 232 78 14 chr15 18717830 18718266 -66977488 + LTR16B LTR ERVL 1 464 0 4612 180 35 31 chr15 18719164 18720090 -66975664 - L1MC1 LINE L1 -220 6113 5184 2234 102 3 0 chr15 18720090 18720393 -66975361 - AluSx SINE Alu -8 304 1 4612 180 35 31 chr15 18720393 18721302 -66974452 - L1MC1 LINE L1 -1149 5184 4280 432 279 128 58 chr15 18721307 18721565 -66974189 - L1 LINE L1 -1147 4999 4724 880 138 0 0 chr15 18721605 18721728 -66974026 - FLAM_C SINE Alu -9 124 2 1729 139 13 10 chr15 18721869 18722172 -66973582 - AluSq SINE Alu -9 304 1 1766 131 3 50 chr15 18722185 18722510 -66973244 - AluSx SINE Alu 0 311 1 360 198 0 12 chr15 18722512 18722593 -66973161 - L1PB4 LINE L1 -4 6152 6073 727 167 47 11 chr15 18722613 18722817 -66972937 + LTR1 LTR ERV1 1 252 -533 * 1361 68 117 10 chr15 18722813 18723019 -66972735 + LTR1 LTR ERV1 558 785 0 4040 131 5 2 chr15 18723021 18723617 -66972137 - L1PA16 LINE L1 -122 6044 5447 237 196 20 0 chr15 18723618 18723669 -66972085 + L1M4 LINE L1 2984 3035 -3111 1300 159 13 121 chr15 18723674 18723988 -66971766 + AluJo SINE Alu 1 280 -32 494 187 0 9 chr15 18723998 18724105 -66971649 + GA-rich Low_complexity Low_complexity 2 107 0 735 144 6 69 chr15 18724111 18724310 -66971444 - L1M LINE L1 -743 5403 5226 2190 189 26 52 chr15 18724416 18724950 -66970804 - L1 LINE L1 -853 5293 4774 1266 188 12 0 chr15 18724984 18725229 -66970525 + L1MB1 LINE L1 5938 6185 -4 836 164 29 18 chr15 18725268 18725439 -66970315 + L1MA10 LINE L1 6161 6333 -1 611 215 114 13 chr15 18725456 18725693 -66970061 + L1M4 LINE L1 3052 3312 -2834 253 236 18 0 chr15 18725693 18725748 -66970006 + MIR3 SINE MIR 128 183 -25 830 251 67 50 chr15 18726942 18727301 -66968453 - MLT1A1 LTR MaLR 0 365 1 277 301 29 0 chr15 18727994 18728097 -66967657 - MIR SINE MIR 0 262 157 2138 100 0 7 chr15 18728264 18728564 -66967190 + AluSx SINE Alu 1 298 -14 2507 132 22 27 chr15 18728815 18729224 -66966530 - MSTB1 LTR MaLR -2 430 24 335 328 82 25 chr15 18729812 18730129 -66965625 + L1MEd LINE L1 908 1242 -4877 1601 174 33 10 chr15 18730170 18730469 -66965285 - AluJo SINE Alu -6 306 1 339 248 31 31 chr15 18730914 18731043 -66964711 - AluSq SINE Alu -146 157 29 337 320 120 39 chr15 18731388 18731612 -66964142 - L1MEd LINE L1 -824 1666 1462 1649 160 3 26 chr15 18731612 18731918 -66963836 - AluJo SINE Alu -3 309 11 337 320 120 39 chr15 18731918 18731954 -66963800 - L1MEd LINE L1 -1028 1462 1430 1601 174 33 10 chr15 18731954 18732253 -66963501 + AluJo SINE Alu 1 306 -6 337 320 120 39 chr15 18732253 18732611 -66963143 - L1MEd LINE L1 -1060 1430 908 268 203 58 0 chr15 18733201 18733270 -66962484 + MSTB1 LTR MaLR 24 96 -336 1651 84 0 4 chr15 18733401 18733628 -66962126 - AluY SINE Alu -85 226 1 1024 189 50 147 chr15 18733651 18734107 -66961647 + L1ME2 LINE L1 5726 6137 -27 302 117 67 17 chr15 18734697 18734757 -66960997 + MER5B DNA MER1_type 113 175 -3 313 170 38 0 chr15 18735030 18735083 -66960671 + Tigger5 DNA MER2_type 1 55 -2268 * 315 232 58 0 chr15 18735052 18735121 -66960633 + Tigger5 DNA MER2_type 2251 2323 0 411 253 50 10 chr15 18735762 18735861 -66959893 - MER91C DNA MER1_type -37 103 1 555 174 0 0 chr15 18736602 18736688 -66959066 - L2 LINE L2 -3 3310 3225 1407 203 33 12 chr15 18738619 18739028 -66956726 - MER66A LTR ERV1 0 478 27 2726 112 0 3 chr15 18739035 18739409 -66956345 - MER66A-int LTR ERV1 0 6676 6304 2962 138 6 4 chr15 18739439 18739938 -66955816 - L1 LINE L1 -2273 3873 3374 635 279 78 40 chr15 18739987 18740385 -66955369 - L1ME LINE L1 -468 5702 5290 302 117 67 17 chr15 18740753 18740813 -66954941 + MER5B DNA MER1_type 113 175 -3 313 170 38 0 chr15 18741086 18741139 -66954615 + Tigger5 DNA MER2_type 1 55 -2268 * 315 232 58 0 chr15 18741108 18741177 -66954577 + Tigger5 DNA MER2_type 2251 2323 0 411 253 50 10 chr15 18741818 18741917 -66953837 + MER91C DNA MER1_type 38 140 0 3178 94 11 0 chr15 18742130 18742565 -66953189 - LTR22A LTR ERVK -18 440 1 526 174 0 0 chr15 18743319 18743405 -66952349 - L2 LINE L2 -3 3310 3225 362 288 25 44 chr15 18745912 18746040 -66949714 + MIR SINE MIR 31 157 -105 2482 98 0 0 chr15 18746040 18746347 -66949407 + AluSc SINE Alu 1 307 -2 362 288 25 44 chr15 18746347 18746378 -66949376 + MIR SINE MIR 157 187 -75 288 305 46 110 chr15 18748075 18748403 -66947351 - L2 LINE L2 -5 3267 2961 329 255 0 29 chr15 18749951 18750053 -66945701 + MER5B DNA MER1_type 72 170 -8 808 229 78 5 chr15 18750960 18751054 -66944700 - MIR SINE MIR -16 246 160 2272 64 44 17 chr15 18751054 18751352 -66944402 + AluY SINE Alu 1 306 -5 808 229 78 5 chr15 18751352 18751475 -66944279 - MIR SINE MIR -102 160 13 769 198 4 110 chr15 18751539 18751776 -66943978 - MER20 DNA MER1_type -7 212 1 1334 199 54 51 chr15 18752291 18752663 -66943091 + MLT1B LTR MaLR 3 375 -15 635 217 126 14 chr15 18754905 18755112 -66940642 + MIR SINE MIR 14 243 -19 452 270 75 46 chr15 18755254 18755645 -66940109 + MLT1H LTR MaLR 26 549 0 288 322 0 11 chr15 18755649 18755739 -66940015 - L3 LINE CR1 -112 1465 1377 278 253 96 36 chr15 18756982 18757065 -66938689 - L2 LINE L2 -36 3277 3190 320 264 6 0 chr15 18758143 18758317 -66937437 + (CA)n Simple_repeat Simple_repeat 1 175 0 228 320 0 0 chr15 18758329 18758538 -66937216 + (CA)n Simple_repeat Simple_repeat 1 209 0 2532 55 0 3 chr15 18760221 18760550 -66935204 - L1PA6 LINE L1 -6 6148 5821 224 254 84 0 chr15 18760580 18760651 -66935103 - L2 LINE L2 -2 3270 3194 241 274 94 0 chr15 18761616 18761722 -66934032 + MER3 DNA MER1_type 1 116 -93 750 183 104 0 chr15 18766008 18766172 -66929582 - MER20 DNA MER1_type 0 219 39 271 271 93 17 chr15 18766229 18766347 -66929407 + MER94 DNA DNA 7 133 -1 483 253 213 15 chr15 18770835 18771037 -66924717 - MIR SINE MIR -1 261 20 375 239 57 25 chr15 18771040 18771060 -66924694 - L1MA10 LINE L1 0 6334 6315 715 216 165 17 chr15 18771060 18771296 -66924458 - L1ME2 LINE L1 -9 6155 5885 2250 125 3 0 chr15 18771681 18771986 -66923768 - AluSx SINE Alu -6 306 1 231 307 40 54 chr15 18772241 18772518 -66923236 + L1ME4a LINE L1 5814 6086 -35 330 224 12 0 chr15 18773131 18773216 -66922538 + L1ME3A LINE L1 6085 6170 0 1205 168 15 0 chr15 18773448 18773651 -66922103 + AluJo SINE Alu 84 289 -23 1676 160 75 14 chr15 18773884 18774177 -66921577 - AluJo SINE Alu -1 311 1 257 299 0 41 chr15 18774186 18774283 -66921471 + L1ME LINE L1 5714 5806 -315 1220 157 20 24 chr15 18774728 18774983 -66920771 - L1MB3 LINE L1 -10 6173 5920 1530 243 63 24 chr15 18775189 18775714 -66920040 + MLT1F LTR MaLR 32 542 0 356 194 0 0 chr15 18775986 18776048 -66919706 + LTR67 LTR ERVL 496 557 0 508 260 91 19 chr15 18776236 18776390 -66919364 - MIR SINE MIR 0 262 98 217 353 12 0 chr15 18777022 18777107 -66918647 - L2 LINE L2 -1 3312 3227 2513 81 0 0 chr15 18777108 18777415 -66918339 + AluY SINE Alu 1 307 -4 1076 151 25 5 chr15 18777512 18777711 -66918043 + L1MD3 LINE L1 7623 7825 -170 2283 100 3 3 chr15 18777834 18778124 -66917630 + AluSx SINE Alu 1 290 -22 2348 88 16 3 chr15 18778274 18778579 -66917175 + AluSc SINE Alu 1 309 0 26 74 0 0 chr15 18779491 18779545 -66916209 + AT_rich Low_complexity Low_complexity 1 54 0 26 30 0 0 chr15 18779691 18779724 -66916030 + AT_rich Low_complexity Low_complexity 1 33 0 2073 166 0 0 chr15 18780023 18780330 -66915424 + AluJb SINE Alu 1 307 -5 469 250 9 0 chr15 18780377 18780489 -66915265 + MARNA DNA Mariner 291 403 -183 21 0 0 0 chr15 18780776 18780797 -66914957 + AT_rich Low_complexity Low_complexity 1 21 0 2310 114 0 0 chr15 18780807 18781105 -66914649 - AluSx SINE Alu -12 300 3 211 350 125 8 chr15 18781157 18781277 -66914477 - MIR3 SINE MIR -65 143 10 1654 186 3 17 chr15 18781881 18782172 -66913582 + AluJo SINE Alu 21 307 -5 2380 57 3 27 chr15 18782428 18782800 -66912954 + AluY SINE Alu 1 311 0 1345 174 94 62 chr15 18782925 18783309 -66912445 + MSTD LTR MaLR 1 396 0 3760 132 22 55 chr15 18783941 18784708 -66911046 + L1MB2 LINE L1 5428 6169 -2 1779 155 3 30 chr15 18784850 18785146 -66910608 - AluJb SINE Alu -18 294 7 24 32 0 0 chr15 18785357 18785388 -66910366 + AT_rich Low_complexity Low_complexity 1 31 0 350 339 50 37 chr15 18785649 18785891 -66909863 - L2 LINE L2 0 3272 3028 1871 146 10 20 chr15 18786238 18786540 -66909214 - AluSx SINE Alu -13 299 1 207 0 0 0 chr15 18787193 18787216 -66908538 + (A)n Simple_repeat Simple_repeat 1 23 0 2730 199 46 52 chr15 18788047 18788319 -66907435 + L1ME1 LINE L1 5479 5751 -415 2364 79 7 16 chr15 18788319 18788623 -66907131 - AluY SINE Alu -10 301 1 2730 199 46 52 chr15 18788623 18789023 -66906731 + L1ME1 LINE L1 5751 6147 -19 1596 157 47 50 chr15 18789298 18789597 -66906157 + AluJo SINE Alu 1 298 -14 347 232 0 50 chr15 18789838 18789937 -66905817 + L1ME4a LINE L1 5975 6068 -53 23 0 0 0 chr15 18790532 18790555 -66905199 + AT_rich Low_complexity Low_complexity 1 23 0 2147 116 26 13 chr15 18791828 18792131 -66903623 + AluSx SINE Alu 1 307 -5 2173 133 3 3 chr15 18792587 18792889 -66902865 + AluSx SINE Alu 1 302 -10 2077 134 0 38 chr15 18792935 18793255 -66902499 - AluJo SINE Alu -4 308 1 338 296 273 23 chr15 18793662 18794058 -66901696 + L2 LINE L2 2819 3313 0 387 302 142 10 chr15 18795382 18795587 -66900167 - MIR SINE MIR -15 247 16 2180 117 0 3 chr15 18795892 18796219 -66899535 - AluSx SINE Alu 0 312 1 460 187 84 18 chr15 18796252 18796418 -66899336 - Charlie1a DNA MER1_type 0 1455 1279 3571 180 51 28 chr15 18796427 18797292 -66898462 - Charlie1a DNA MER1_type -316 1139 255 192 40 0 0 chr15 18797292 18797317 -66898437 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 2170 125 0 28 chr15 18797319 18797639 -66898115 + AluSq SINE Alu 1 311 -2 1235 213 12 0 chr15 18797647 18797887 -66897867 + AluJo SINE Alu 60 302 -10 264 262 16 0 chr15 18797890 18797951 -66897803 - Charlie1a DNA MER1_type -1207 248 187 826 207 9 70 chr15 18797981 18798194 -66897560 - Charlie1a DNA MER1_type -1250 205 6 1380 148 14 9 chr15 18798295 18798512 -66897242 + AluJb SINE Alu 1 218 -94 300 120 0 0 chr15 18798513 18798563 -66897191 + AluJb SINE Alu 85 134 -168 9096 42 5 9 chr15 18798565 18800468 -66895286 + L1PA5 LINE L1 4248 6147 -7 1105 162 0 0 chr15 18800526 18800699 -66895055 + AluJb SINE Alu 120 292 -20 211 316 0 40 chr15 18801132 18801232 -66894522 - MIR SINE MIR -68 140 56 1656 155 61 0 chr15 18801502 18801766 -66893988 - AluJo SINE Alu -21 291 12 951 222 68 0 chr15 18801805 18802012 -66893742 + MER58A DNA MER1_type 1 221 -3 220 27 54 0 chr15 18803101 18803138 -66892616 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 33 90 0 0 chr15 18803404 18803493 -66892261 + AT_rich Low_complexity Low_complexity 1 89 0 3385 157 29 7 chr15 18803686 18804306 -66891448 + L1MB8 LINE L1 5488 6121 -57 1548 210 10 16 chr15 18804306 18804611 -66891143 - AluJb SINE Alu -9 303 1 947 212 22 0 chr15 18804642 18804826 -66890928 - MER5A DNA MER1_type -1 188 1 787 252 97 8 chr15 18805014 18805252 -66890502 - MIR SINE MIR -3 259 1 1663 126 0 40 chr15 18806226 18806322 -66889432 + AluSq SINE Alu 42 140 -173 2086 122 0 20 chr15 18806322 18806625 -66889129 + AluSx SINE Alu 1 297 -15 1663 126 0 40 chr15 18806625 18806806 -66888948 + AluSq SINE Alu 140 308 -5 388 324 21 28 chr15 18807347 18807489 -66888265 + MER5A DNA MER1_type 1 141 -48 2032 116 0 0 chr15 18807503 18807833 -66887921 + AluSx SINE Alu 1 330 0 286 258 0 0 chr15 18808119 18808181 -66887573 + MIR SINE MIR 84 145 -117 1959 292 66 19 chr15 18808250 18809258 -66886496 - L2 LINE L2 -2 3311 2256 251 339 69 15 chr15 18809846 18809976 -66885778 + L2 LINE L2 3133 3269 -3 250 284 251 33 chr15 18811626 18811841 -66883913 + MIR SINE MIR 1 262 0 737 173 54 43 chr15 18811901 18812086 -66883668 + MER5A DNA MER1_type 1 187 -2 789 214 94 20 chr15 18812097 18812298 -66883456 - MER20 DNA MER1_type -1 218 3 408 236 207 0 chr15 18812308 18812458 -66883296 - MER5A DNA MER1_type 0 189 4 26 50 0 0 chr15 18813654 18813694 -66882060 + AT_rich Low_complexity Low_complexity 1 40 0 247 329 0 0 chr15 18815023 18815093 -66880661 + MER5A DNA MER1_type 45 114 -75 25 65 0 0 chr15 18815323 18815369 -66880385 + AT_rich Low_complexity Low_complexity 1 46 0 1465 267 114 7 chr15 18815402 18815987 -66879767 - HAL1 LINE L1 -405 2102 1455 1255 260 53 75 chr15 18816040 18816673 -66879081 + L1MB1 LINE L1 764 1287 -5366 1110 243 3 10 chr15 18816870 18817162 -66878592 + L1MB1 LINE L1 1494 1783 -4870 1379 203 24 71 chr15 18817169 18817633 -66878121 + L1MB1 LINE L1 3949 4390 -2342 * 4698 159 26 23 chr15 18817611 18818079 -66877675 + L1MB1 LINE L1 5378 5843 -911 1934 144 32 12 chr15 18818079 18818355 -66877399 - MER7A DNA MER2_type -2692 346 62 1728 52 0 9 chr15 18818355 18818565 -66877189 + AluY SINE Alu 1 208 -103 1934 144 32 12 chr15 18818565 18818629 -66877125 - MER7A DNA MER2_type -2976 62 1 4698 159 26 23 chr15 18818629 18819535 -66876219 + L1MB1 LINE L1 5843 6752 -2 1997 148 20 0 chr15 18820084 18820389 -66875365 - AluJb SINE Alu -1 311 1 27 29 0 0 chr15 18821652 18821686 -66874068 + AT_rich Low_complexity Low_complexity 1 34 0 4241 148 29 4 chr15 18821687 18822662 -66873092 - L1MA8 LINE L1 -268 6023 5030 710 236 46 15 chr15 18823472 18823667 -66872087 + MIR SINE MIR 56 256 -6 1320 78 0 0 chr15 18823904 18824109 -66871645 - AluY SINE Alu 0 323 119 1100 135 53 0 chr15 18824114 18824284 -66871470 + AluJb SINE Alu 121 299 -13 344 264 80 8 chr15 18824286 18824411 -66871343 + HAL1 LINE L1 2341 2474 -33 2364 99 0 0 chr15 18824424 18824716 -66871038 + AluSp SINE Alu 1 292 -21 746 191 16 0 chr15 18825017 18825143 -66870611 + FLAM_A SINE Alu 1 128 -5 1817 160 10 24 chr15 18825190 18825483 -66870271 - AluJb SINE Alu -23 289 1 1999 131 24 3 chr15 18825488 18825785 -66869969 - AluSp SINE Alu -10 303 1 2285 94 0 3 chr15 18825990 18826288 -66869466 - AluSq SINE Alu -16 297 1 1828 177 0 0 chr15 18826539 18826833 -66868921 + AluJb SINE Alu 1 294 -18 703 192 16 35 chr15 18826859 18827171 -66868583 + MLT1A1 LTR MaLR 1 396 0 395 333 74 28 chr15 18827171 18827423 -66868331 + L1ME3A LINE L1 5368 5634 -528 650 214 78 89 chr15 18827523 18827780 -66867974 + MER77 LTR ERV1 130 383 -222 241 238 95 24 chr15 18827792 18827876 -66867878 + MER68 LTR ERV1 254 343 -219 454 219 19 0 chr15 18827964 18828069 -66867685 + MER77 LTR ERV1 499 605 0 315 276 45 37 chr15 18828069 18828236 -66867518 + L1ME3A LINE L1 5723 5889 -307 1880 124 14 21 chr15 18828973 18829263 -66866491 - AluSx SINE Alu -22 290 3 436 200 208 8 chr15 18829315 18829435 -66866319 + Tigger1 DNA MER2_type 1 144 -2274 2105 118 10 0 chr15 18829439 18829728 -66866026 - AluSx SINE Alu -20 292 1 949 165 65 15 chr15 18829750 18829950 -66865804 + Tigger1 DNA MER2_type 2209 2418 0 596 271 44 33 chr15 18829957 18830138 -66865616 - MIR3 SINE MIR -10 198 16 376 304 62 0 chr15 18830425 18830537 -66865217 - L2 LINE L2 0 3272 3154 1839 168 26 7 chr15 18832429 18832733 -66863021 - AluJb SINE Alu -2 310 1 1987 149 0 3 chr15 18833260 18833556 -66862198 - AluJb SINE Alu -17 295 1 23 0 0 0 chr15 18833962 18833985 -66861769 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr15 18834424 18834445 -66861309 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr15 18835102 18835133 -66860621 + AT_rich Low_complexity Low_complexity 1 31 0 680 204 99 7 chr15 18835655 18835807 -66859947 - FRAM SINE Alu 0 166 1 2310 65 0 31 chr15 18835905 18836196 -66859558 - AluY SINE Alu -13 298 17 462 271 44 17 chr15 18836994 18837175 -66858579 - L1MC5 LINE L1 -80 7881 7696 1668 131 23 65 chr15 18837206 18837512 -66858242 - AluJo SINE Alu -19 293 1 318 245 41 20 chr15 18837524 18837622 -66858132 - L1MC5 LINE L1 -262 7699 7600 322 301 125 0 chr15 18837817 18837953 -66857801 + L2 LINE L2 3161 3313 0 1829 228 189 23 chr15 18838075 18838461 -66857293 + L2 LINE L2 1748 2068 -1246 180 0 0 0 chr15 18838461 18838481 -66857273 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1963 133 7 3 chr15 18838483 18838768 -66856986 - AluSx SINE Alu -26 286 1 1829 228 189 23 chr15 18838768 18839080 -66856674 + L2 LINE L2 2068 2566 -748 570 225 191 65 chr15 18839077 18839370 -66856384 + L2 LINE L2 2967 3296 -17 * 375 270 74 18 chr15 18840449 18840612 -66855142 + MER104 DNA Tc2 1 172 -8 891 150 0 0 chr15 18841125 18841258 -66854496 - FLAM_C SINE Alu 0 133 1 210 118 0 0 chr15 18841436 18841470 -66854284 + (TG)n Simple_repeat Simple_repeat 1 34 0 236 133 22 0 chr15 18841519 18841564 -66854190 + AluSg/x SINE Alu 80 125 -175 710 165 8 8 chr15 18842429 18842550 -66853204 - FLAM_C SINE Alu -10 133 13 309 51 0 0 chr15 18842740 18842779 -66852975 + (TG)n Simple_repeat Simple_repeat 2 40 0 487 248 16 16 chr15 18842922 18843047 -66852707 - AluSq/x SINE Alu -188 125 1 300 357 18 0 chr15 18843158 18843270 -66852484 - MIR SINE MIR -55 153 40 742 220 13 0 chr15 18844657 18844807 -66850947 + MER58A DNA MER1_type 5 156 0 227 229 0 0 chr15 18844807 18844854 -66850900 + MER58A DNA MER1_type 178 224 0 202 413 58 0 chr15 18844865 18844986 -66850768 - L2 LINE L2 -12 3260 3133 700 242 28 28 chr15 18845230 18845441 -66850313 + AluSg/x SINE Alu 100 310 -2 365 180 11 0 chr15 18845856 18845945 -66849809 + GA-rich Low_complexity Low_complexity 1 90 0 517 316 18 53 chr15 18845972 18846311 -66849443 + L1M4 LINE L1 3798 4124 -2022 2262 82 0 7 chr15 18846332 18846674 -66849080 + AluY SINE Alu 1 311 0 206 291 12 70 chr15 18846710 18846796 -66848958 - L2 LINE L2 -655 2659 2579 2255 81 16 26 chr15 18846860 18847167 -66848587 - AluSp SINE Alu -9 304 1 261 174 0 130 chr15 18848835 18848876 -66846878 - MIR SINE MIR -30 232 208 2149 109 3 26 chr15 18848876 18849187 -66846567 - AluSx SINE Alu -8 304 1 261 174 0 130 chr15 18849187 18849237 -66846517 - MIR SINE MIR -54 208 153 1380 222 78 1 chr15 18849242 18849587 -66846167 - L1MB5 LINE L1 -1 6173 5804 389 88 0 29 chr15 18849662 18849730 -66846024 - L1PA6 LINE L1 -10 6144 6079 36126 79 18 7 chr15 18849984 18855872 -66839882 - L1PA6 LINE L1 -195 5959 11 267 203 0 0 chr15 18855883 18855947 -66839807 - L1MB5 LINE L1 -350 5824 5761 1813 282 77 41 chr15 18855990 18857367 -66838387 - L1M4c LINE L1 -5024 1622 5 365 266 125 23 chr15 18857373 18857501 -66838253 - MIR SINE MIR -111 151 11 180 111 0 0 chr15 18857539 18857566 -66838188 + (T)n Simple_repeat Simple_repeat 1 27 0 4041 146 30 20 chr15 18857795 18858459 -66837295 + L1MC1 LINE L1 5588 6261 -72 1550 195 13 27 chr15 18858459 18858631 -66837123 - AluJb SINE Alu -12 300 132 2113 125 7 0 chr15 18858631 18858926 -66836828 - AluSp SINE Alu -16 297 1 1550 195 13 27 chr15 18858926 18859051 -66836703 - AluJb SINE Alu -180 132 7 4041 146 30 20 chr15 18859051 18859119 -66836635 + L1MC1 LINE L1 6261 6327 -6 2139 123 0 32 chr15 18859264 18859574 -66836180 - AluSx SINE Alu -12 300 1 1616 193 4 4 chr15 18859641 18859911 -66835843 - AluSx SINE Alu -18 294 25 1562 192 23 7 chr15 18860210 18860512 -66835242 - AluJb SINE Alu -5 307 1 1920 170 43 38 chr15 18860632 18861049 -66834705 + MSTB1 LTR MaLR 1 419 -13 404 279 92 9 chr15 18861094 18861334 -66834420 + L1ME LINE L1 5592 5848 -303 362 299 93 52 chr15 18861509 18861777 -66833977 + L1ME4a LINE L1 5662 5940 -181 2047 151 7 0 chr15 18861924 18862222 -66833532 - AluSq SINE Alu -13 300 1 2510 211 50 73 chr15 18862335 18862639 -66833115 + L1M4 LINE L1 16 325 -6217 1809 119 0 4 chr15 18862639 18862883 -66832871 - AluSx SINE Alu -33 279 37 2510 211 50 73 chr15 18862883 18863331 -66832423 + L1M4 LINE L1 325 751 -5791 1037 179 60 63 chr15 18863330 18863586 -66832168 + L1MB7 LINE L1 5876 6132 -52 * 1645 195 10 7 chr15 18863586 18863883 -66831871 + AluJb SINE Alu 1 298 -14 1037 179 60 63 chr15 18863883 18863928 -66831826 + L1MB7 LINE L1 6132 6176 -8 432 141 165 16 chr15 18864220 18864341 -66831413 - L1ME4a LINE L1 -9 6112 5974 25 0 0 0 chr15 18864506 18864531 -66831223 + AT_rich Low_complexity Low_complexity 1 25 0 232 211 193 0 chr15 18865031 18865088 -66830666 - MIR3 SINE MIR -28 180 113 2441 70 0 3 chr15 18865130 18865429 -66830325 - AluY SINE Alu -13 298 1 2039 90 83 0 chr15 18865934 18866212 -66829542 - AluSq SINE Alu -12 301 1 2312 137 25 23 chr15 18866644 18866958 -66828796 + L1MB4 LINE L1 5743 6060 -120 1768 191 0 10 chr15 18866958 18867256 -66828498 + AluSx SINE Alu 1 295 -17 2312 137 25 23 chr15 18867256 18867378 -66828376 + L1MB4 LINE L1 6060 6180 0 204 125 0 0 chr15 18868163 18868195 -66827559 + (TA)n Simple_repeat Simple_repeat 1 32 0 5624 108 58 27 chr15 18868195 18869645 -66826109 - L1PA13 LINE L1 -1 6162 4694 2343 102 0 0 chr15 18869729 18870024 -66825730 + AluSx SINE Alu 1 295 -17 4568 199 99 18 chr15 18870024 18871300 -66824454 + Charlie1a DNA MER1_type 76 1455 0 219 280 40 13 chr15 18871364 18871439 -66824315 + MIR3 SINE MIR 125 201 -7 1875 132 14 11 chr15 18871881 18872196 -66823558 + AluJo SINE Alu 1 316 0 2861 13 0 0 chr15 18873150 18873461 -66822293 + AluYb8 SINE Alu 1 311 -7 2200 105 3 3 chr15 18873583 18873888 -66821866 + AluSx SINE Alu 1 305 -7 1142 130 0 0 chr15 18873945 18874099 -66821655 + AluSg/x SINE Alu 135 288 -22 248 254 202 9 chr15 18874357 18874471 -66821283 + L2 LINE L2 3177 3312 -1 1580 154 84 0 chr15 18874930 18875228 -66820526 + MER7A DNA MER2_type 1 321 -25 226 174 29 29 chr15 18875275 18875344 -66820410 + (TA)n Simple_repeat Simple_repeat 1 69 0 285 292 117 8 chr15 18877322 18877442 -66818312 + L3 LINE CR1 1428 1560 -17 730 143 364 18 chr15 18878188 18878405 -66817349 + AluJo SINE Alu 1 292 -20 24 0 0 29 chr15 18878580 18878591 -66817163 + AT_rich Low_complexity Low_complexity 1 11 -23 1660 156 10 10 chr15 18878591 18878879 -66816875 + AluJb SINE Alu 3 290 -22 24 0 0 29 chr15 18878879 18878902 -66816852 + AT_rich Low_complexity Low_complexity 11 34 0 1269 263 84 23 chr15 18880222 18880746 -66815008 - L1MC4a LINE L1 -1736 6072 5517 2274 115 0 6 chr15 18880746 18881060 -66814694 + AluSx SINE Alu 1 312 0 799 154 13 47 chr15 18881060 18881209 -66814545 + AluJo/FRAM SINE Alu 134 277 -35 22 0 0 0 chr15 18881210 18881232 -66814522 + AT_rich Low_complexity Low_complexity 1 22 0 264 273 0 0 chr15 18881423 18881478 -66814276 + (CA)n Simple_repeat Simple_repeat 2 56 0 936 120 66 11 chr15 18881512 18881695 -66814059 - AluSg/x SINE Alu -18 292 100 1750 87 0 5 chr15 18881797 18882016 -66813738 - AluSx SINE Alu -94 218 1 198 0 0 0 chr15 18882030 18882052 -66813702 + (A)n Simple_repeat Simple_repeat 1 22 0 2006 141 0 3 chr15 18882837 18883135 -66812619 + AluJb SINE Alu 12 308 -4 472 271 65 32 chr15 18883205 18883360 -66812394 - MIR SINE MIR -29 233 74 1869 147 18 3 chr15 18885516 18885802 -66809952 + AluSx SINE Alu 1 290 -22 357 315 8 16 chr15 18885807 18885934 -66809820 + L1 LINE L1 3661 3786 -2360 1021 119 0 0 chr15 18886019 18886153 -66809601 + AluSq/x SINE Alu 1 134 -179 2201 99 3 7 chr15 18886155 18886447 -66809307 + AluSg SINE Alu 1 291 -19 1538 203 17 31 chr15 18886865 18887225 -66808529 - MLT1A2 LTR MaLR -16 358 4 862 206 0 25 chr15 18888759 18888919 -66806835 - FAM SINE Alu -20 165 10 24 32 0 0 chr15 18889173 18889204 -66806550 + AT_rich Low_complexity Low_complexity 1 31 0 213 39 0 0 chr15 18889518 18889544 -66806210 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 2159 126 0 10 chr15 18889639 18889941 -66805813 + AluSx SINE Alu 6 304 -8 376 246 76 0 chr15 18891472 18891590 -66804164 - MER94 DNA DNA -4 130 4 335 43 0 0 chr15 18892055 18892102 -66803652 + MADE1 DNA Mariner 1 47 -33 679 199 0 15 chr15 18892934 18893065 -66802689 - FLAM_C SINE Alu -4 129 1 307 306 12 0 chr15 18893195 18893280 -66802474 - L1 LINE L1 -2412 3734 3649 247 254 32 16 chr15 18893390 18893453 -66802301 + LTR67 LTR ERVL 114 177 -380 355 291 35 35 chr15 18893668 18893840 -66801914 + LTR67 LTR ERVL 384 555 -2 2312 151 5 10 chr15 18893968 18894358 -66801396 + MLT1B LTR MaLR 1 388 -2 1785 197 0 0 chr15 18894767 18895061 -66800693 + AluJo SINE Alu 1 294 -18 715 334 57 45 chr15 18895191 18896111 -66799643 + ERVL LTR ERVL 790 1696 -3958 474 300 63 41 chr15 18896238 18896508 -66799246 + ERVL LTR ERVL 1904 2179 -3585 617 319 42 42 chr15 18896595 18896855 -66798899 - MIR SINE MIR -1 261 2 226 223 117 11 chr15 18897802 18897896 -66797858 - L1ME4a LINE L1 -4 6117 6014 1838 154 20 10 chr15 18898013 18898311 -66797443 + AluJb SINE Alu 1 301 -11 2350 106 0 3 chr15 18898533 18898835 -66796919 + AluSx SINE Alu 1 301 -11 729 258 120 27 chr15 18898894 18899214 -66796540 - L1MC4a LINE L1 -1853 5955 5595 2301 86 3 13 chr15 18899214 18899515 -66796239 - AluY SINE Alu -13 298 1 729 258 120 27 chr15 18899515 18899562 -66796192 - L1MC4a LINE L1 -2213 5595 5554 22 0 0 0 chr15 18899587 18899609 -66796145 + AT_rich Low_complexity Low_complexity 1 22 0 391 299 134 31 chr15 18899609 18899870 -66795884 + L1MB3 LINE L1 4914 5201 -945 441 0 0 0 chr15 18899881 18899930 -66795824 + (CA)n Simple_repeat Simple_repeat 2 50 0 522 145 0 0 chr15 18899951 18900034 -66795720 + L1MCa LINE L1 17 99 -6327 236 244 23 93 chr15 18900034 18900101 -66795653 - L1M4 LINE L1 -3649 2497 2427 1392 211 16 20 chr15 18900101 18900404 -66795350 + AluSq SINE Alu 1 302 -11 236 244 23 93 chr15 18900404 18900508 -66795246 - L1M4 LINE L1 -3719 2427 2338 1552 168 34 14 chr15 18900645 18900936 -66794818 + AluSq SINE Alu 5 301 -12 477 237 7 7 chr15 18900937 18901089 -66794665 - L1M4 LINE L1 -3705 2441 2290 207 100 0 0 chr15 18901138 18901168 -66794586 + (GTTTG)n Simple_repeat Simple_repeat 2 31 0 2186 100 0 21 chr15 18901175 18901466 -66794288 - AluSq SINE Alu -26 287 3 216 97 0 0 chr15 18901610 18901641 -66794113 + (T)n Simple_repeat Simple_repeat 1 31 0 252 340 41 10 chr15 18901669 18901863 -66793891 + L1MB3 LINE L1 5372 5571 -2237 21 57 0 0 chr15 18901976 18902011 -66793743 + AT_rich Low_complexity Low_complexity 1 35 0 814 180 0 0 chr15 18902108 18902236 -66793518 - FLAM_A SINE Alu -4 129 2 357 24 0 0 chr15 18902596 18902638 -66793116 + (TTCA)n Simple_repeat Simple_repeat 4 45 0 662 348 19 75 chr15 18902641 18903109 -66792645 - L2 LINE L2 -12 3260 2819 360 266 44 18 chr15 18903139 18903252 -66792502 - L2 LINE L2 -5 3308 3193 246 346 19 9 chr15 18903277 18903384 -66792370 - L2 LINE L2 -541 2773 2666 4490 105 9 12 chr15 18903440 18904182 -66791572 - L1P LINE L1 -1594 4552 3813 2479 69 12 0 chr15 18904322 18904655 -66791099 + L1PA8A LINE L1 5445 5781 -350 2269 119 6 0 chr15 18904655 18904966 -66790788 + AluSp SINE Alu 1 313 0 11875 136 64 49 chr15 18904977 18908043 -66787711 + L1P3 LINE L1 2 3338 -3123 6344 99 23 12 chr15 18908028 18909245 -66786509 + L1P3 LINE L1 4717 5930 -539 * 543 204 7 23 chr15 18909674 18909829 -66785925 + L1MB3 LINE L1 5830 5983 -185 4958 52 8 0 chr15 18909829 18910468 -66785286 + L1PA7 LINE L1 5432 6075 -79 1420 94 0 0 chr15 18910472 18910653 -66785101 - AluSg/x SINE Alu -16 296 116 658 72 0 54 chr15 18910657 18910768 -66784986 + L1MB3 LINE L1 6077 6181 -2 1027 173 0 0 chr15 18911745 18911913 -66783841 - FRAM SINE Alu -8 168 1 2176 114 0 10 chr15 18912903 18913200 -66782554 - AluSg SINE Alu -16 294 1 1632 168 3 7 chr15 18913738 18914024 -66781730 - AluSc SINE Alu -15 294 10 1995 146 3 3 chr15 18914227 18914522 -66781232 + AluSx SINE Alu 1 295 -17 26 0 0 0 chr15 18914713 18914739 -66781015 + AT_rich Low_complexity Low_complexity 1 26 0 2544 197 41 18 chr15 18915694 18915949 -66779805 + L1M4 LINE L1 4044 4292 -1854 2265 121 131 8 chr15 18915949 18916330 -66779424 - MSTA LTR MaLR 0 428 1 2544 197 41 18 chr15 18916330 18916738 -66779016 + L1M4 LINE L1 4292 4722 -1424 1119 110 93 0 chr15 18916744 18916926 -66778828 + THE1B LTR MaLR 3 201 -163 757 126 92 0 chr15 18917067 18917186 -66778568 + AluSx SINE Alu 1 130 -183 580 269 6 6 chr15 18917262 18917437 -66778317 + AluSx SINE Alu 117 291 -21 921 212 54 63 chr15 18917977 18918312 -66777442 + THE1B LTR MaLR 20 351 -13 1281 194 47 140 chr15 18918330 18918379 -66777375 + L1M4 LINE L1 4730 4782 -1364 2116 106 17 17 chr15 18918379 18918680 -66777074 + AluSx SINE Alu 3 303 -9 1281 194 47 140 chr15 18918680 18919264 -66776490 + L1M4 LINE L1 4782 5304 -842 344 278 12 124 chr15 18919506 18919698 -66776056 + AluJb SINE Alu 137 309 0 21 36 0 0 chr15 18920563 18920591 -66775163 + AT_rich Low_complexity Low_complexity 1 28 0 1834 147 28 17 chr15 18920978 18921338 -66774416 + L1MB4 LINE L1 5263 5626 -548 2015 147 35 0 chr15 18921338 18921684 -66774070 + MLT2D LTR ERVL 1 358 -56 245 128 21 0 chr15 18921735 18921782 -66773972 + MLT2D LTR ERVL 464 511 -9 2568 167 51 13 chr15 18921809 18921908 -66773846 + L1MB4 LINE L1 5621 5715 -465 3712 188 46 43 chr15 18921908 18922859 -66772895 - LTR13 LTR ERVK 0 954 1 2568 167 51 13 chr15 18922859 18923293 -66772461 + L1MB4 LINE L1 5715 6174 -6 354 121 72 60 chr15 18923312 18923395 -66772359 + L1MB8 LINE L1 6093 6176 -2 362 262 106 55 chr15 18923791 18924066 -66771688 - HAL1 LINE L1 -581 1926 1638 988 113 102 6 chr15 18924225 18924402 -66771352 - MER46A DNA MER2_type 0 236 43 912 169 32 87 chr15 18924740 18924959 -66770795 + AluSg/x SINE Alu 85 291 -21 401 145 0 0 chr15 18924978 18925040 -66770714 - MER46A DNA MER2_type -173 63 2 2182 109 0 0 chr15 18925230 18925513 -66770241 - AluSx SINE Alu -26 286 4 386 276 52 11 chr15 18925653 18925827 -66769927 - HAL1 LINE L1 -2298 209 29 560 363 76 49 chr15 18925908 18926505 -66769249 + L2 LINE L2 2660 3270 -2 1649 226 26 19 chr15 18927035 18927451 -66768303 - LTR52 LTR ERVL -2 419 1 530 326 78 12 chr15 18927796 18928038 -66767716 - MIR SINE MIR -3 259 2 2067 150 0 6 chr15 18928258 18928571 -66767183 - AluSx SINE Alu -1 311 1 4949 151 11 27 chr15 18928781 18929746 -66766008 + L1MB2 LINE L1 5226 6170 -1 2377 83 0 29 chr15 18929750 18930063 -66765691 + AluSx SINE Alu 1 304 -8 1948 170 0 3 chr15 18930514 18930826 -66764928 - AluJb SINE Alu -1 311 1 207 0 0 0 chr15 18930911 18930934 -66764820 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr15 18932493 18932515 -66763239 + AT_rich Low_complexity Low_complexity 1 22 0 874 282 15 23 chr15 18932702 18932961 -66762793 - MIR SINE MIR -1 261 5 746 197 21 0 chr15 18933034 18933176 -66762578 + MER58B DNA MER1_type 197 341 0 417 289 164 50 chr15 18933261 18933579 -66762175 + L3 LINE CR1 1216 1569 -8 530 273 10 68 chr15 18933826 18934031 -66761723 - L2 LINE L2 0 3313 3121 333 292 117 13 chr15 18934973 18935127 -66760627 + MIR SINE MIR 93 262 0 2021 138 0 40 chr15 18935540 18935865 -66759889 - AluJb SINE Alu 0 312 1 248 281 43 43 chr15 18936415 18936554 -66759200 + L1ME LINE L1 5676 5814 -307 24 32 0 0 chr15 18936558 18936589 -66759165 + AT_rich Low_complexity Low_complexity 1 31 0 884 213 51 4 chr15 18936689 18936924 -66758830 - L1MA4 LINE L1 -5 6295 6050 324 124 180 11 chr15 18937014 18937103 -66758651 + L1ME4a LINE L1 6018 6121 0 2151 93 7 14 chr15 18937498 18937788 -66757966 + AluSq SINE Alu 1 288 -25 180 0 0 0 chr15 18937788 18937808 -66757946 + (TA)n Simple_repeat Simple_repeat 2 21 0 1961 143 7 3 chr15 18937823 18938110 -66757644 + AluSx SINE Alu 9 296 -16 877 315 8 0 chr15 18938319 18938560 -66757194 + MIR SINE MIR 20 262 0 1837 197 18 59 chr15 18938660 18938934 -66756820 + L1M4 LINE L1 4787 5028 -1118 2191 125 0 0 chr15 18938934 18939229 -66756525 - AluSx SINE Alu -17 295 1 1837 197 18 59 chr15 18939229 18939517 -66756237 + L1M4 LINE L1 5028 5326 -820 * 10810 147 27 38 chr15 18939508 18942487 -66753267 + L1PA14 LINE L1 3196 6143 -18 239 184 0 0 chr15 18942497 18942546 -66753208 + L1M LINE L1 5320 5368 -934 2012 131 3 10 chr15 18942548 18942845 -66752909 + AluSx SINE Alu 1 295 -17 477 0 0 0 chr15 18944074 18944127 -66751627 + (CA)n Simple_repeat Simple_repeat 2 54 0 244 126 0 0 chr15 18945100 18945140 -66750614 + Alu SINE Alu 1 34 -266 956 97 0 8 chr15 18945242 18945366 -66750388 - AluSg1 SINE Alu -186 123 1 2023 145 3 3 chr15 18945870 18946166 -66749588 - AluSx SINE Alu -16 296 1 565 298 40 13 chr15 18946364 18946515 -66749239 + L2 LINE L2 3116 3270 -2 1682 181 10 29 chr15 18946604 18946918 -66748836 + AluJo SINE Alu 1 308 -4 1571 205 142 21 chr15 18948448 18948878 -66746876 - MLT1D LTR MaLR -4 501 20 467 294 0 8 chr15 18949718 18949837 -66745917 + L2 LINE L2 3151 3268 -4 22 35 0 0 chr15 18949924 18949953 -66745801 + AT_rich Low_complexity Low_complexity 1 29 0 1445 211 21 40 chr15 18950177 18950551 -66745203 - MLT1A2 LTR MaLR -4 370 4 1054 158 29 49 chr15 18950593 18950839 -66744915 + L1MB8 LINE L1 5935 6175 -3 450 279 44 7 chr15 18951275 18951411 -66744343 - MIR3 SINE MIR -21 187 47 22 35 0 0 chr15 18952318 18952347 -66743407 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr15 18953248 18953274 -66742480 + AT_rich Low_complexity Low_complexity 1 26 0 2418 98 0 16 chr15 18953934 18954250 -66741504 - AluSx SINE Alu 0 312 2 2518 69 3 0 chr15 18954326 18954629 -66741125 - AluSp SINE Alu -5 308 5 2428 79 0 10 chr15 18954855 18955158 -66740596 - AluSq SINE Alu -12 301 2 2009 138 0 0 chr15 18955168 18955473 -66740281 - AluSx SINE Alu 0 307 3 1441 134 4 13 chr15 18957195 18957427 -66738327 + MER96B DNA MER1_type? 1 230 -187 34 0 0 0 chr15 18958792 18958826 -66736928 + AT_rich Low_complexity Low_complexity 1 34 0 735 164 0 0 chr15 18958829 18958939 -66736815 - FLAM_C SINE Alu -32 111 2 2043 119 0 0 chr15 18959501 18959778 -66735976 - AluSx SINE Alu -2 310 34 329 244 23 12 chr15 18959939 18960025 -66735729 + MIR SINE MIR 35 121 -87 2177 110 3 3 chr15 18960052 18960344 -66735410 + AluSx SINE Alu 3 294 -18 1561 204 16 3 chr15 18960482 18960796 -66734958 + L1MD3 LINE L1 7398 7715 -280 320 116 29 14 chr15 18960803 18960872 -66734882 + L1MD3 LINE L1 7924 7993 -2 525 302 35 30 chr15 18961983 18962215 -66733539 - MIR SINE MIR -2 260 28 673 166 150 32 chr15 18962714 18962901 -66732853 + MER6B DNA MER2_type 1 209 -1 2167 115 0 3 chr15 18962915 18963211 -66732543 - AluSx SINE Alu -16 296 2 187 319 118 52 chr15 18964941 18965076 -66730678 - MIR3 SINE MIR -12 196 53 412 229 18 9 chr15 18965192 18965301 -66730453 - L2 LINE L2 -5 3308 3199 1681 159 3 24 chr15 18965487 18965799 -66729955 + AluJb SINE Alu 1 306 0 888 134 0 28 chr15 18966435 18966577 -66729177 + FLAM_C SINE Alu 1 138 -5 324 322 68 0 chr15 18966934 18967052 -66728702 - MIR3 SINE MIR 0 208 83 961 247 31 0 chr15 18967993 18968220 -66727534 - MIR SINE MIR -1 261 28 692 264 47 35 chr15 18968452 18968706 -66727048 + MIR SINE MIR 6 262 0 294 178 0 0 chr15 18970323 18970368 -66725386 - HsTC2 DNA Tc2 -612 1286 1242 258 307 0 0 chr15 18970366 18970441 -66725313 - HsTC2 DNA Tc2 -1780 118 44 * 2121 132 7 0 chr15 18971125 18971435 -66724319 - AluSx SINE Alu 0 312 1 309 346 56 26 chr15 18971889 18972123 -66723631 - L3b LINE CR1 -84 1499 1259 671 141 8 41 chr15 18972123 18972244 -66723510 - FLAM_A SINE Alu -6 136 20 3088 184 58 39 chr15 18972370 18973010 -66722744 - MER82 DNA MER2_type 0 653 2 1960 153 7 19 chr15 18973073 18973243 -66722511 + AluJb SINE Alu 1 167 -145 3190 56 99 7 chr15 18973243 18973688 -66722066 - LTR19A LTR ERV1 0 486 1 1960 153 7 19 chr15 18973688 18973825 -66721929 + AluJb SINE Alu 167 304 -8 846 219 32 14 chr15 18973852 18974071 -66721683 - L1MC4 LINE L1 -1013 7029 6807 2375 102 0 3 chr15 18974162 18974476 -66721278 - AluSq SINE Alu 0 313 1 604 225 14 7 chr15 18974598 18974736 -66721018 + MIR SINE MIR 43 181 -81 288 310 108 13 chr15 18975027 18975185 -66720569 + MIR SINE MIR 9 181 -81 637 242 39 22 chr15 18975307 18975485 -66720269 + MIR SINE MIR 21 201 -61 522 231 40 67 chr15 18975830 18976084 -66719670 - L1M LINE L1 -747 5423 5175 2243 109 0 25 chr15 18976086 18976406 -66719348 + AluSx SINE Alu 1 312 0 411 228 132 9 chr15 18976413 18976567 -66719187 - L1MEc LINE L1 -1537 4889 4718 882 146 0 0 chr15 18976568 18976698 -66719056 - AluSp/q SINE Alu -17 296 167 317 137 20 0 chr15 18977408 18977459 -66718295 - Alu SINE Alu -250 52 1 2261 98 0 0 chr15 18977574 18977861 -66717893 + AluSx SINE Alu 9 295 -17 2106 125 0 14 chr15 18977907 18978218 -66717536 + AluSx SINE Alu 1 307 0 491 249 85 28 chr15 18978220 18978397 -66717357 - MER5A DNA MER1_type 0 189 3 1599 158 32 45 chr15 18979795 18979987 -66715767 - AluJo SINE Alu -6 306 118 450 0 0 0 chr15 18979987 18980037 -66715717 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 1599 158 32 45 chr15 18980037 18980154 -66715600 - AluJo SINE Alu -194 118 1 381 216 62 21 chr15 18980555 18980652 -66715102 + Charlie7 DNA MER1_type 1 101 -2511 4814 138 102 111 chr15 18980654 18981234 -66714520 - L1MC3 LINE L1 -7 7778 7194 283 253 24 24 chr15 18981234 18981317 -66714437 - MLT1F1 LTR MaLR -443 124 42 4814 138 102 111 chr15 18981317 18981898 -66713856 - L1MC3 LINE L1 -591 7194 6546 7760 227 34 29 chr15 18981925 18983012 -66712742 - L1MEc LINE L1 -1751 4675 3595 2194 185 74 15 chr15 18983012 18983487 -66712267 - LTR22 LTR ERVK -4 505 3 7760 227 34 29 chr15 18983487 18984033 -66711721 - L1MEc LINE L1 -2831 3595 3053 2260 107 3 0 chr15 18984033 18984323 -66711431 + AluSg SINE Alu 2 292 -18 7760 227 34 29 chr15 18984323 18984835 -66710919 - L1MEc LINE L1 -3373 3053 2555 1951 125 60 0 chr15 18984835 18985116 -66710638 + AluSq SINE Alu 1 298 -15 7760 227 34 29 chr15 18985116 18985352 -66710402 - L1MEc LINE L1 -3871 2555 2322 1208 142 0 16 chr15 18985369 18985559 -66710195 - AluJ SINE Alu -1 311 125 399 211 0 0 chr15 18985560 18985650 -66710104 + (TATG)n Simple_repeat Simple_repeat 1 90 0 216 0 0 0 chr15 18985729 18985753 -66710001 + (TA)n Simple_repeat Simple_repeat 2 25 0 907 150 0 0 chr15 18985758 18985891 -66709863 - AluJ SINE Alu -169 133 1 1510 194 148 18 chr15 18985891 18986345 -66709409 - L1MEc LINE L1 -4145 2281 1769 2274 106 3 0 chr15 18986545 18986838 -66708916 - AluSg SINE Alu -16 294 1 892 259 42 63 chr15 18986914 18987339 -66708415 - HAL1b LINE L1 -709 639 224 2052 160 0 0 chr15 18987361 18987667 -66708087 - AluJb SINE Alu -4 308 3 337 248 139 84 chr15 18987837 18988075 -66707679 - L1MC4a LINE L1 -1571 6237 5987 1917 106 12 84 chr15 18988307 18988627 -66707127 + AluSx SINE Alu 1 297 -15 200 29 0 59 chr15 18988646 18988680 -66707074 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1561 84 31 0 chr15 18988682 18988873 -66706881 - AluSq SINE Alu -116 197 1 532 189 27 9 chr15 18988962 18989073 -66706681 + MIR SINE MIR 59 171 -91 2313 87 0 0 chr15 18989132 18989418 -66706336 + AluSc SINE Alu 1 286 -23 192 77 0 0 chr15 18989418 18989444 -66706310 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 303 28 0 0 chr15 18990532 18990568 -66705186 + (GA)n Simple_repeat Simple_repeat 2 37 0 211 296 70 0 chr15 18990849 18990920 -66704834 + L3b LINE CR1 1282 1357 -226 253 240 53 0 chr15 18992366 18992441 -66703313 + MER5B DNA MER1_type 4 82 -96 197 347 65 16 chr15 18992474 18992598 -66703156 - L2 LINE L2 -15 3257 3128 1878 146 0 17 chr15 18993307 18993602 -66702152 - AluJb SINE Alu -17 295 6 325 235 80 53 chr15 18993651 18993820 -66701934 + MIR SINE MIR 16 187 -58 240 316 22 15 chr15 18994782 18994918 -66700836 + CT-rich Low_complexity Low_complexity 1 137 0 277 140 18 0 chr15 18995417 18995474 -66700280 - L2 LINE L2 0 3313 3256 1096 251 70 48 chr15 18995562 18995775 -66699979 - L1ME4a LINE L1 -18 6103 5896 2122 129 0 19 chr15 18995775 18996093 -66699661 - AluSx SINE Alu 0 312 1 1096 251 70 48 chr15 18996093 18996362 -66699392 - L1ME4a LINE L1 -225 5896 5610 2441 70 0 3 chr15 18996882 18997195 -66698559 + AluSx SINE Alu 1 312 0 1385 187 111 16 chr15 18998063 18998378 -66697376 + MER2 DNA MER2_type 1 345 0 2334 87 0 3 chr15 18998584 18998893 -66696861 - AluSg SINE Alu -2 308 1 287 289 10 39 chr15 18999636 18999740 -66696014 + MIR SINE MIR 92 192 -70 341 256 13 0 chr15 19000129 19000207 -66695547 - L2 LINE L2 -2 3311 3233 387 272 59 94 chr15 19000316 19000570 -66695184 - L2 LINE L2 -19 3253 3009 585 312 50 10 chr15 19001039 19001241 -66694513 - MIR SINE MIR -25 237 28 2258 79 3 0 chr15 19001242 19001533 -66694221 - AluSg SINE Alu -11 299 8 1448 107 4 22 chr15 19002121 19002346 -66693408 + AluSc SINE Alu 76 296 -13 22 35 0 0 chr15 19002385 19002414 -66693340 + AT_rich Low_complexity Low_complexity 1 29 0 611 122 11 0 chr15 19002420 19002510 -66693244 - FLAM_C SINE Alu -25 118 28 1264 144 10 0 chr15 19002514 19002716 -66693038 + AluJo SINE Alu 88 291 -21 267 170 24 0 chr15 19002716 19002763 -66692991 - Alu SINE Alu -263 37 1 1012 107 6 13 chr15 19002828 19002987 -66692767 - L1MA4 LINE L1 -27 6273 6116 2074 115 3 0 chr15 19002989 19003276 -66692478 + AluSx SINE Alu 1 288 -24 560 110 0 11 chr15 19003277 19003368 -66692386 + (CA)n Simple_repeat Simple_repeat 2 91 0 1208 138 11 77 chr15 19003410 19003468 -66692286 - L1MA4 LINE L1 -179 6121 6061 2155 120 0 0 chr15 19003468 19003768 -66691986 - AluSx SINE Alu -8 304 5 1208 138 11 77 chr15 19003768 19003969 -66691785 - L1MA4 LINE L1 -239 6061 5879 2297 139 11 0 chr15 19004548 19004907 -66690847 - MER47A DNA MER2_type 0 366 4 279 385 8 0 chr15 19004926 19005043 -66690711 - L2 LINE L2 -658 2656 2539 800 152 4 2 chr15 19005140 19005400 -66690354 + AluJb SINE Alu 4 309 -3 238 217 72 24 chr15 19005446 19005529 -66690225 - L2 LINE L2 -943 2371 2285 2178 102 0 0 chr15 19005599 19005893 -66689861 + AluSx SINE Alu 1 294 -18 268 336 35 35 chr15 19005895 19006121 -66689633 - L2 LINE L2 -1049 2265 2040 959 204 33 41 chr15 19007893 19008163 -66687591 - L2 LINE L2 0 3313 3046 549 261 121 19 chr15 19008880 19009088 -66686666 + MIR SINE MIR 15 244 -18 465 339 17 7 chr15 19009129 19009328 -66686426 - MIR SINE MIR -56 206 5 2109 101 0 3 chr15 19010045 19010365 -66685389 - AluSq SINE Alu 0 319 1 433 294 75 25 chr15 19010555 19010715 -66685039 - MIR SINE MIR -82 180 13 351 257 95 20 chr15 19011267 19011366 -66684388 - MIR SINE MIR -56 206 91 2107 98 7 3 chr15 19011366 19011661 -66684093 - AluY SINE Alu -15 296 1 351 257 95 20 chr15 19011661 19011709 -66684045 - MIR SINE MIR -171 91 48 210 266 97 0 chr15 19012047 19012115 -66683639 - MIR SINE MIR -95 113 47 2137 124 0 0 chr15 19019155 19019454 -66676300 - AluSq SINE Alu -14 299 1 2234 65 24 0 chr15 19019772 19020064 -66675690 - AluSx SINE Alu -13 299 1 1310 196 3 81 chr15 19022390 19022712 -66673042 - AluSq SINE Alu -2 301 5 1559 148 0 77 chr15 19022980 19023102 -66672652 + AluJb SINE Alu 22 152 -160 1989 112 34 0 chr15 19023102 19023397 -66672357 + AluSx SINE Alu 1 305 -7 1559 148 0 77 chr15 19023397 19023584 -66672170 + AluJb SINE Alu 152 307 -5 2285 86 0 0 chr15 19023685 19023989 -66671765 + AluSg SINE Alu 1 304 -6 1402 214 19 0 chr15 19024113 19024375 -66671379 + Tigger7 DNA MER2_type 1 267 -2220 382 252 19 28 chr15 19026342 19026449 -66669305 + MER5A DNA MER1_type 2 107 -82 1860 157 0 10 chr15 19027101 19027414 -66668340 + AluJb SINE Alu 1 310 -2 1257 184 29 36 chr15 19027416 19027694 -66668060 - AluJo SINE Alu -36 276 1 1640 176 23 3 chr15 19028495 19028796 -66666958 - AluJb SINE Alu -5 307 1 2021 89 43 0 chr15 19029525 19029806 -66665948 - AluSx SINE Alu -19 293 1 1611 167 0 14 chr15 19030434 19030716 -66665038 - AluJo SINE Alu -30 282 5 213 305 152 14 chr15 19031111 19031321 -66664433 + L2 LINE L2 2489 2727 -587 228 250 0 0 chr15 19031401 19031449 -66664305 + L2 LINE L2 3225 3272 0 826 94 0 0 chr15 19031608 19031714 -66664040 - U6 snRNA snRNA -1 106 1 292 333 78 35 chr15 19032624 19032765 -66662989 + MER5A DNA MER1_type 43 189 0 2120 57 43 7 chr15 19032789 19033069 -66662685 - AluY SINE Alu -21 290 1 1165 149 6 0 chr15 19033176 19033357 -66662397 + AluSc SINE Alu 1 182 -127 1264 253 33 14 chr15 19034450 19034813 -66660941 + L1ME3 LINE L1 5793 6162 0 303 185 93 139 chr15 19034892 19035043 -66660711 - L1MC/D LINE L1 -2330 5547 5404 1647 164 3 24 chr15 19035059 19035357 -66660397 - AluJb SINE Alu -20 292 1 573 192 64 24 chr15 19035491 19035616 -66660138 - AluJb SINE Alu -181 131 2 1688 201 96 11 chr15 19035617 19036055 -66659699 - L1MC/D LINE L1 -3057 3158 2684 1202 128 0 16 chr15 19036062 19036249 -66659505 - AluSx SINE Alu -9 301 118 969 113 7 13 chr15 19036298 19036448 -66659306 - AluSq/x SINE Alu -164 149 1 685 104 10 0 chr15 19036453 19036549 -66659205 - AluSx SINE Alu -179 133 37 536 86 0 0 chr15 19036656 19036726 -66659028 - AluS SINE Alu -242 71 2 1791 204 48 71 chr15 19036727 19036974 -66658780 - L1MEc LINE L1 -3524 2691 2440 1534 191 14 10 chr15 19036974 19037268 -66658486 - AluJo SINE Alu -17 295 1 1791 204 48 71 chr15 19037268 19037406 -66658348 - L1MEc LINE L1 -3775 2440 2300 1489 185 0 40 chr15 19037406 19037708 -66658046 + AluJo SINE Alu 3 292 -20 1791 204 48 71 chr15 19037708 19037912 -66657842 - L1MEc LINE L1 -3915 2300 2093 2503 49 0 0 chr15 19037912 19038218 -66657536 - AluY SINE Alu -5 306 1 1791 204 48 71 chr15 19038218 19038286 -66657468 - L1MEc LINE L1 -4122 2093 2090 1805 104 4 0 chr15 19038286 19038537 -66657217 - AluSg SINE Alu -1 309 58 1791 204 48 71 chr15 19038537 19038571 -66657183 - L1MEc LINE L1 -4125 2090 2057 440 189 0 0 chr15 19038571 19038645 -66657109 + MER5A DNA MER1_type 1 74 -115 1495 175 7 25 chr15 19038645 19038925 -66656829 - AluJo SINE Alu -1 311 37 290 143 0 0 chr15 19039036 19039085 -66656669 + FAM SINE Alu 127 175 0 452 173 12 0 chr15 19039102 19039183 -66656571 + MER5A DNA MER1_type 108 189 0 285 300 105 5 chr15 19039184 19039394 -66656360 - L1MEc LINE L1 -4332 2064 1834 2259 96 3 3 chr15 19039507 19039820 -66655934 - AluSp SINE Alu 0 313 1 363 235 15 0 chr15 19040356 19040424 -66655330 + L2 LINE L2 3233 3301 -12 2320 76 7 0 chr15 19040698 19040999 -66654755 - AluY SINE Alu -8 303 1 379 329 68 59 chr15 19041723 19041960 -66653794 + MLT1L LTR MaLR 368 606 -9 2068 110 17 3 chr15 19042371 19042672 -66653082 + AluSx SINE Alu 1 305 -7 1916 125 0 14 chr15 19042851 19043139 -66652615 + AluSx SINE Alu 1 284 -28 297 268 95 49 chr15 19044987 19045271 -66650483 + L1ME4a LINE L1 5598 5894 -227 421 77 0 0 chr15 19045360 19045425 -66650329 + L1MA3 LINE L1 6241 6305 0 2094 114 0 3 chr15 19045447 19045745 -66650009 + AluSq SINE Alu 1 297 -16 450 0 0 0 chr15 19045745 19045795 -66649959 + (TA)n Simple_repeat Simple_repeat 2 51 0 1689 153 0 27 chr15 19045805 19046099 -66649655 + AluJb SINE Alu 7 292 -20 1313 157 20 137 chr15 19047358 19047541 -66648213 - AluYb8 SINE Alu -7 311 187 1747 68 0 0 chr15 19047541 19047746 -66648008 - AluSg/x SINE Alu -23 287 83 1313 157 20 137 chr15 19047746 19047913 -66647841 - AluYb8 SINE Alu -131 187 2 307 333 11 11 chr15 19047936 19048023 -66647731 - MIR SINE MIR -102 106 20 721 213 0 0 chr15 19048097 19048219 -66647535 + FLAM_C SINE Alu 2 123 -20 51 65 0 0 chr15 19048221 19048314 -66647440 + AT_rich Low_complexity Low_complexity 1 93 0 1139 152 0 0 chr15 19048328 19048493 -66647261 + AluJb SINE Alu 135 299 -13 2159 108 6 22 chr15 19048571 19048885 -66646869 + AluSx SINE Alu 1 309 -3 3259 139 44 2 chr15 19049050 19049525 -66646229 + LTR42 LTR ERVL 1 495 0 494 307 51 31 chr15 19050293 19050550 -66645204 + L2 LINE L2 2251 2512 -802 1310 178 23 5 chr15 19051045 19051264 -66644490 + AluJo SINE Alu 1 223 -89 727 212 0 0 chr15 19051980 19052098 -66643656 + FLAM_A SINE Alu 1 118 -15 40 0 0 0 chr15 19052098 19052138 -66643616 + AT_rich Low_complexity Low_complexity 1 40 0 240 319 121 0 chr15 19053519 19053610 -66642144 - L2 LINE L2 -37 3235 3134 27 49 0 0 chr15 19056783 19056824 -66638930 + AT_rich Low_complexity Low_complexity 1 41 0 2084 135 7 0 chr15 19056881 19057178 -66638576 + AluSx SINE Alu 1 299 -13 2317 93 0 26 chr15 19057322 19057633 -66638121 - AluSx SINE Alu -9 303 1 821 265 36 56 chr15 19058140 19058236 -66637518 - MIR SINE MIR -5 257 161 2375 64 0 0 chr15 19058236 19058516 -66637238 - AluSg SINE Alu -13 297 18 821 265 36 56 chr15 19058516 19058668 -66637086 - MIR SINE MIR -101 161 14 1847 142 0 48 chr15 19059243 19059553 -66636201 + AluJb SINE Alu 3 297 -15 1703 136 159 7 chr15 19059824 19060133 -66635621 - MER46B DNA MER2_type -4 232 2 291 244 154 57 chr15 19060199 19060322 -66635432 - AluJo SINE Alu -166 136 2 2109 128 0 23 chr15 19061006 19061310 -66634444 + AluSx SINE Alu 1 297 -15 213 233 0 0 chr15 19061651 19061694 -66634060 + CT-rich Low_complexity Low_complexity 2 44 0 2244 111 0 7 chr15 19063065 19063371 -66632383 + AluSg SINE Alu 1 304 -6 2407 97 0 0 chr15 19063833 19064143 -66631611 + AluSx SINE Alu 1 310 -2 2365 86 0 13 chr15 19064398 19064702 -66631052 + AluSg SINE Alu 1 300 -10 2401 67 3 0 chr15 19065232 19065516 -66630238 + AluSp SINE Alu 15 299 -14 2126 92 3 3 chr15 19066955 19067274 -66628480 + AluSq SINE Alu 1 319 0 1775 116 20 53 chr15 19067436 19067737 -66628017 - AluJo SINE Alu -21 291 1 617 217 8 16 chr15 19068054 19068183 -66627571 + FLAM_A SINE Alu 1 128 -5 1094 126 5 73 chr15 19068242 19068448 -66627306 + AluJo SINE Alu 97 288 -24 2386 93 0 0 chr15 19068699 19068999 -66626755 + AluSg SINE Alu 1 300 -10 1685 155 6 59 chr15 19069162 19069371 -66626383 - AluJb SINE Alu -6 306 118 2605 124 22 0 chr15 19069371 19069727 -66626027 + THE1B LTR MaLR 1 364 0 1685 155 6 59 chr15 19069727 19069840 -66625914 - AluJb SINE Alu -194 118 1 1715 174 10 10 chr15 19069922 19070216 -66625538 - AluJo SINE Alu -18 294 1 264 175 88 0 chr15 19071179 19071236 -66624518 + L2 LINE L2 3248 3309 -4 2393 90 0 0 chr15 19071492 19071792 -66623962 + AluSc SINE Alu 1 300 -9 306 286 13 0 chr15 19072059 19072136 -66623618 - L2 LINE L2 -2 3311 3234 2038 96 16 68 chr15 19072149 19072472 -66623282 + AluSq SINE Alu 1 306 -7 302 224 24 35 chr15 19072497 19072582 -66623172 - MIR SINE MIR -178 84 1 2294 97 0 7 chr15 19072708 19073017 -66622737 - AluSx SINE Alu -5 307 1 2432 80 3 0 chr15 19073102 19073404 -66622350 + AluSg SINE Alu 1 303 -7 2268 87 7 0 chr15 19073548 19073835 -66621919 + AluSq SINE Alu 5 293 -20 1473 191 29 35 chr15 19074195 19074542 -66621212 + AluJb SINE Alu 1 345 0 345 171 17 16 chr15 19074722 19074796 -66620958 + FLAM SINE Alu 62 118 -15 1860 157 0 7 chr15 19076087 19076380 -66619374 + AluSx SINE Alu 1 291 -21 860 250 113 98 chr15 19077019 19077369 -66618385 + L2 LINE L2 2337 2680 -633 2110 109 14 0 chr15 19077369 19077663 -66618091 + AluSg SINE Alu 1 298 -12 860 250 113 98 chr15 19077663 19077685 -66618069 + L2 LINE L2 2680 2700 -613 1411 159 17 29 chr15 19077685 19077924 -66617830 + MER46A DNA MER2_type 1 236 0 860 250 113 98 chr15 19077924 19078344 -66617410 + L2 LINE L2 2700 3132 -181 1230 235 125 37 chr15 19078344 19078868 -66616886 + MLT1G1 LTR MaLR 1 555 0 495 258 68 37 chr15 19078875 19079038 -66616716 + L2 LINE L2 3136 3303 -10 1425 198 37 4 chr15 19079116 19079384 -66616370 + AluJo SINE Alu 1 277 -35 207 0 0 0 chr15 19079390 19079413 -66616341 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2254 95 37 0 chr15 19079810 19080105 -66615649 + AluSx SINE Alu 1 306 -6 252 192 211 0 chr15 19080355 19080407 -66615347 - L2 LINE L2 -5 3308 3246 774 101 37 0 chr15 19081131 19081240 -66614514 - AluSq/x SINE Alu -199 113 1 975 147 49 38 chr15 19081288 19081472 -66614282 - Tigger2a DNA MER2_type -248 186 1 1467 163 32 4 chr15 19081472 19081718 -66614036 + Tigger2a DNA MER2_type 192 444 0 801 225 108 13 chr15 19081720 19081997 -66613757 - L1M4 LINE L1 -2886 3260 2984 576 128 51 17 chr15 19081997 19082114 -66613640 - L1MC3 LINE L1 0 7719 2849 591 207 107 8 chr15 19082123 19082244 -66613510 + AluJo SINE Alu 10 142 -170 2251 116 0 3 chr15 19082249 19082560 -66613194 + AluSq SINE Alu 4 313 0 379 94 0 0 chr15 19082561 19082614 -66613140 - L1MC3 LINE L1 -113 7672 7620 560 91 0 39 chr15 19082615 19082714 -66613040 - AluSg/x SINE Alu 0 302 207 885 144 5 113 chr15 19082744 19082806 -66612948 - L1MC3 LINE L1 -108 7677 7610 2240 119 0 0 chr15 19082806 19083101 -66612653 - AluSg SINE Alu -15 295 1 885 144 5 113 chr15 19083101 19083146 -66612608 - L1MC3 LINE L1 -175 7610 7562 2267 102 13 0 chr15 19083146 19083451 -66612303 - AluSx SINE Alu -3 309 1 885 144 5 113 chr15 19083451 19083564 -66612190 - L1MC3 LINE L1 -223 7562 7480 914 209 88 55 chr15 19083564 19083731 -66612023 - L1MC3 LINE L1 -3170 2910 2727 2219 107 7 0 chr15 19083731 19084021 -66611733 + AluSq SINE Alu 1 292 -21 914 209 88 55 chr15 19084021 19084160 -66611594 - L1MC3 LINE L1 -3353 2727 2594 1303 183 8 52 chr15 19084177 19084199 -66611555 - AluJo SINE Alu -21 291 270 2056 117 3 0 chr15 19084199 19084509 -66611245 + AluSq SINE Alu 1 311 0 1303 183 8 52 chr15 19084509 19084753 -66611001 - AluJo SINE Alu -42 270 36 2850 251 135 44 chr15 19084753 19085342 -66610412 - L1MC3 LINE L1 -3547 2533 1999 2228 108 0 0 chr15 19085342 19085637 -66610117 + AluSq SINE Alu 1 295 -18 2850 251 135 44 chr15 19085637 19085985 -66609769 - L1MC3 LINE L1 -4081 1999 1684 2130 125 3 6 chr15 19085985 19086298 -66609456 - AluSx SINE Alu 0 312 1 2850 251 135 44 chr15 19086298 19087162 -66608592 - L1MC3 LINE L1 -4396 1684 901 2517 72 0 7 chr15 19087162 19087467 -66608287 - AluSg SINE Alu -6 304 2 2850 251 135 44 chr15 19087467 19087937 -66607817 - L1MC3 LINE L1 -5179 901 2 550 335 51 4 chr15 19088234 19088587 -66607167 + L2 LINE L2 2720 3087 -185 1450 208 136 59 chr15 19088829 19089124 -66606630 - MER20B DNA MER1_type -28 755 484 1719 134 84 0 chr15 19089124 19089385 -66606369 + AluSg SINE Alu 6 288 -22 1450 208 136 59 chr15 19089385 19089517 -66606237 - MER20B DNA MER1_type -299 484 364 1689 158 37 3 chr15 19089517 19089814 -66605940 + AluSx SINE Alu 1 307 -5 1450 208 136 59 chr15 19089814 19089914 -66605840 - MER20B DNA MER1_type -419 364 186 587 136 88 61 chr15 19089919 19089994 -66605760 + L1MA8 LINE L1 6137 6208 -83 4562 172 53 24 chr15 19089994 19090596 -66605158 + MER6 DNA MER2_type 1 584 -281 2315 83 3 10 chr15 19090596 19090897 -66604857 - AluSc SINE Alu -10 299 1 1693 196 7 3 chr15 19090898 19091194 -66604560 - AluJo SINE Alu -11 301 5 4562 172 53 24 chr15 19091194 19091426 -66604328 + MER6 DNA MER2_type 583 861 -4 587 136 88 61 chr15 19091426 19091497 -66604257 + L1MA8 LINE L1 6208 6287 -4 2213 85 7 4 chr15 19091508 19091789 -66603965 + AluSq SINE Alu 1 282 -31 216 0 0 0 chr15 19091794 19091818 -66603936 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1708 177 0 35 chr15 19091837 19092154 -66603600 + AluJo SINE Alu 1 306 -6 1257 147 35 15 chr15 19092270 19092522 -66603232 - L1MB3 LINE L1 -15 6165 5914 1225 203 59 53 chr15 19092522 19092862 -66602892 + MER2 DNA MER2_type 3 344 0 1257 147 35 15 chr15 19092862 19092884 -66602870 - L1MB3 LINE L1 -266 5914 5894 321 271 84 0 chr15 19092898 19093005 -66602749 - L1MC4a LINE L1 -1892 5916 5801 203 156 0 0 chr15 19093072 19093104 -66602650 + (CA)n Simple_repeat Simple_repeat 2 33 0 2234 101 7 3 chr15 19093434 19093731 -66602023 + AluSx SINE Alu 1 298 -14 225 0 0 0 chr15 19093733 19093758 -66601996 + (CA)n Simple_repeat Simple_repeat 2 26 0 2180 97 43 7 chr15 19093816 19094116 -66601638 - AluSp SINE Alu -2 311 1 2307 96 0 10 chr15 19094393 19094705 -66601049 + AluSx SINE Alu 1 309 -3 1367 89 6 6 chr15 19094705 19094885 -66600869 + AluSq SINE Alu 120 299 -14 474 271 103 48 chr15 19096126 19096366 -66599388 + MIR SINE MIR 12 262 0 937 93 0 16 chr15 19096392 19096521 -66599233 - AluJb SINE Alu -185 127 1 216 86 0 0 chr15 19096529 19096564 -66599190 + (TTAG)n Simple_repeat Simple_repeat 2 36 0 2070 129 0 0 chr15 19096564 19096850 -66598904 - AluSx SINE Alu -26 286 1 2450 67 0 0 chr15 19097041 19097339 -66598415 + AluSc SINE Alu 5 302 -7 470 172 46 0 chr15 19097612 19097699 -66598055 - MER20 DNA MER1_type -3 216 126 1651 176 11 0 chr15 19097699 19097971 -66597783 + AluJb SINE Alu 1 275 -37 207 0 0 0 chr15 19097972 19097995 -66597759 + (TC)n Simple_repeat Simple_repeat 2 24 0 597 176 81 37 chr15 19098028 19098164 -66597590 - MER20 DNA MER1_type -75 144 3 251 324 102 62 chr15 19098182 19099008 -66596746 + L2 LINE L2 1112 1962 -1352 286 70 0 0 chr15 19099035 19099078 -66596676 - AluSc SINE Alu -3 296 254 288 103 0 0 chr15 19099100 19099139 -66596615 - AluSq SINE Alu -130 173 135 2256 85 6 29 chr15 19099139 19099455 -66596299 - AluSq SINE Alu -2 311 3 331 274 69 129 chr15 19099745 19100095 -66595659 + L2 LINE L2 2939 3267 -5 1487 104 125 57 chr15 19101032 19101073 -66594681 - THE1C LTR MaLR 0 375 338 2169 134 0 0 chr15 19101073 19101380 -66594374 + AluSx SINE Alu 1 307 -5 1487 104 125 57 chr15 19101380 19101618 -66594136 - THE1C LTR MaLR -37 338 77 1944 139 16 19 chr15 19101667 19101843 -66593911 - AluSg SINE Alu 0 310 134 2407 89 0 0 chr15 19101843 19102147 -66593607 - AluSx SINE Alu -8 304 1 1944 139 16 19 chr15 19102147 19102279 -66593475 - AluSg SINE Alu -176 134 3 6871 120 33 14 chr15 19102282 19103332 -66592422 - THE1C-int LTR MaLR -6 1574 505 2277 83 10 13 chr15 19103711 19104011 -66591743 - AluSp SINE Alu -14 299 1 1331 142 23 14 chr15 19104503 19104722 -66591032 + AluJb SINE Alu 1 221 -91 2328 115 0 3 chr15 19105017 19105329 -66590425 - AluSq SINE Alu -2 311 1 569 211 19 0 chr15 19105699 19105803 -66589951 + FLAM_A SINE Alu 1 106 -36 21 36 0 0 chr15 19105954 19105982 -66589772 + AT_rich Low_complexity Low_complexity 1 28 0 1699 175 6 38 chr15 19106037 19106351 -66589403 - AluJo SINE Alu -8 304 1 492 189 144 15 chr15 19106398 19106530 -66589224 - MIR SINE MIR -14 248 100 2523 56 10 0 chr15 19106659 19106962 -66588792 - AluY SINE Alu -4 307 2 640 174 43 17 chr15 19107043 19107158 -66588596 + FLAM_C SINE Alu 2 119 -24 216 0 0 0 chr15 19107159 19107183 -66588571 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 671 153 0 18 chr15 19107597 19107708 -66588046 - FLAM_A SINE Alu -14 128 20 2287 98 0 16 chr15 19107825 19108008 -66587746 - AluSx SINE Alu 0 312 135 2377 106 0 0 chr15 19108008 19108309 -66587445 - AluSx SINE Alu -11 301 1 2287 98 0 16 chr15 19108309 19108442 -66587312 - AluSx SINE Alu -177 135 1 1713 144 3 41 chr15 19108688 19109013 -66586741 + AluSx SINE Alu 2 315 0 502 318 103 29 chr15 19109223 19109465 -66586289 - MIR SINE MIR -1 261 2 1399 135 154 26 chr15 19109738 19110004 -66585750 - AluSg SINE Alu -10 300 1 209 130 43 0 chr15 19110142 19110188 -66585566 + T-rich Low_complexity Low_complexity 3 50 0 2346 101 7 0 chr15 19110197 19110495 -66585259 - AluSx SINE Alu -12 300 1 196 154 39 19 chr15 19110518 19110570 -66585184 + CT-rich Low_complexity Low_complexity 3 55 0 2282 106 0 6 chr15 19110573 19110884 -66584870 - AluSg SINE Alu -1 309 1 1475 196 38 14 chr15 19110886 19111177 -66584577 - AluJo SINE Alu -14 298 1 1855 165 3 0 chr15 19111460 19111757 -66583997 - AluJb SINE Alu -14 298 1 278 256 61 0 chr15 19111826 19111908 -66583846 + MIR SINE MIR 66 152 -110 505 120 0 27 chr15 19112474 19112547 -66583207 + Tigger2 DNA MER2_type 1 71 -2647 285 203 102 0 chr15 19112547 19112606 -66583148 - MER2 DNA MER2_type 0 345 281 1701 185 9 31 chr15 19112613 19112932 -66582822 + AluJb SINE Alu 1 312 0 395 222 25 0 chr15 19112934 19113015 -66582739 - MER8 DNA MER2_type -78 161 79 2404 91 0 0 chr15 19114080 19114377 -66581377 - AluSg SINE Alu -13 297 1 2173 131 0 0 chr15 19114426 19114724 -66581030 + AluSx SINE Alu 1 298 -14 1909 171 0 0 chr15 19114771 19115075 -66580679 - AluJb SINE Alu -8 304 1 207 265 265 0 chr15 19115240 19115323 -66580431 - L2 LINE L2 0 3313 3209 795 134 75 59 chr15 19115389 19115575 -66580179 - MER20 DNA MER1_type 0 219 31 2406 99 0 0 chr15 19117014 19117316 -66578438 - AluSg SINE Alu -8 302 1 780 157 15 22 chr15 19117355 19117489 -66578265 - FLAM_C SINE Alu 0 133 1 343 195 0 69 chr15 19118368 19118455 -66577299 - AluSq SINE Alu -131 172 92 2276 88 0 3 chr15 19118470 19118754 -66577000 - AluSq SINE Alu -30 283 1 216 0 0 0 chr15 19118754 19118778 -66576976 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1871 141 0 36 chr15 19118783 19119088 -66576666 - AluSx SINE Alu -18 294 1 2189 119 7 0 chr15 19119337 19119640 -66576114 - AluSx SINE Alu -7 305 1 853 204 25 0 chr15 19120806 19120968 -66574786 - FRAM SINE Alu 0 166 1 2379 86 0 3 chr15 19120978 19121268 -66574486 - AluSc SINE Alu -20 289 1 2280 104 0 0 chr15 19121571 19121859 -66573895 - AluSx SINE Alu -24 288 1 1753 164 0 7 chr15 19122361 19122648 -66573106 - AluJo SINE Alu -23 289 5 1840 149 58 0 chr15 19123063 19123358 -66572396 - AluJb SINE Alu 0 312 1 379 175 90 166 chr15 19123359 19123515 -66572239 + MER46C DNA MER2_type 22 188 -150 1662 149 0 88 chr15 19123515 19123685 -66572069 - AluJo SINE Alu -25 287 104 2406 107 0 0 chr15 19123685 19123994 -66571760 - AluSx SINE Alu -3 309 1 2085 147 7 0 chr15 19124001 19124307 -66571447 - AluSx SINE Alu -2 310 3 1662 149 0 88 chr15 19124307 19124436 -66571318 - AluJo SINE Alu -214 98 7 379 175 90 166 chr15 19124436 19124490 -66571264 + MER46C DNA MER2_type 188 216 -122 2459 86 3 0 chr15 19124685 19124988 -66570766 - AluSg SINE Alu -6 304 1 2669 49 0 0 chr15 19125126 19125433 -66570321 - AluY SINE Alu -4 307 1 23 68 0 0 chr15 19125861 19125905 -66569849 + AT_rich Low_complexity Low_complexity 1 44 0 195 42 0 0 chr15 19127356 19127380 -66568374 + (A)n Simple_repeat Simple_repeat 1 24 0 2212 110 7 3 chr15 19127482 19127781 -66567973 - AluSx SINE Alu -9 303 4 212 376 40 0 chr15 19128295 19128420 -66567334 - MIR SINE MIR -101 161 32 2249 99 0 3 chr15 19128429 19128755 -66566999 - AluSg SINE Alu 0 310 1 189 320 97 29 chr15 19128925 19128999 -66566755 + MER5A DNA MER1_type 70 154 -35 1871 136 55 33 chr15 19128999 19129329 -66566425 + MER1B DNA MER1_type 1 337 0 189 320 97 29 chr15 19129329 19129357 -66566397 + MER5A DNA MER1_type 154 179 -10 2594 47 0 3 chr15 19129725 19130024 -66565730 + AluY SINE Alu 1 298 -13 2361 100 0 0 chr15 19130091 19130401 -66565353 - AluSg SINE Alu 0 310 1 24 0 0 0 chr15 19130909 19130933 -66564821 + AT_rich Low_complexity Low_complexity 1 24 0 2317 94 0 7 chr15 19131478 19131777 -66563977 - AluSx SINE Alu -15 297 1 1297 149 0 5 chr15 19132027 19132222 -66563532 - AluJ SINE Alu -14 298 105 499 103 0 26 chr15 19132226 19132304 -66563450 + AluS SINE Alu 2 77 -236 806 142 0 0 chr15 19132304 19132424 -66563330 - AluJ SINE Alu -181 121 2 2418 101 0 0 chr15 19133218 19133525 -66562229 - AluSx SINE Alu -5 307 1 304 198 164 35 chr15 19133528 19133644 -66562110 + L1ME4a LINE L1 5990 6120 -1 1066 197 30 0 chr15 19133699 19133897 -66561857 - MER58A DNA MER1_type -19 205 2 635 217 87 60 chr15 19133906 19134090 -66561664 - MER5A DNA MER1_type 0 189 1 551 153 36 27 chr15 19134773 19134884 -66560870 - FRAM SINE Alu -22 154 43 1823 163 41 7 chr15 19135117 19135411 -66560343 + AluJo SINE Alu 1 304 -8 420 195 24 0 chr15 19135751 19135833 -66559921 - HsTC2 DNA Tc2 -1812 86 3 2232 100 17 0 chr15 19136725 19137024 -66558730 - AluSg SINE Alu -6 304 1 1277 107 25 10 chr15 19138383 19138579 -66557175 - Tigger1 DNA MER2_type 0 2418 2220 1166 123 25 0 chr15 19138584 19138747 -66557007 + AluSx SINE Alu 1 167 -145 2340 104 0 0 chr15 19138761 19139069 -66556685 - AluSg SINE Alu -2 308 1 5798 108 56 21 chr15 19139069 19139985 -66555769 - Tigger1 DNA MER2_type -726 1692 745 753 96 39 0 chr15 19139983 19140087 -66555667 - Tigger1 DNA MER2_type -1787 631 524 * 1747 102 120 11 chr15 19140088 19140354 -66555400 - AluSg1 SINE Alu -14 295 1 899 151 84 0 chr15 19140357 19140523 -66555231 - Tigger1 DNA MER2_type -1961 457 278 1158 172 20 5 chr15 19140524 19140722 -66555032 + AluJb SINE Alu 88 288 -24 1341 150 146 0 chr15 19140722 19140975 -66554779 - Tigger1 DNA MER2_type -2127 291 2 280 214 107 29 chr15 19140975 19141078 -66554676 + MIR SINE MIR 152 262 0 342 255 49 29 chr15 19141386 19141488 -66554266 + MIR SINE MIR 7 110 -152 638 112 0 0 chr15 19141759 19141848 -66553906 + FLAM_A SINE Alu 22 110 -32 201 39 0 0 chr15 19141849 19141875 -66553879 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 336 48 0 0 chr15 19141874 19141916 -66553838 + (CA)n Simple_repeat Simple_repeat 1 42 0 5111 126 46 29 chr15 19141916 19142828 -66552926 + L1MA4A LINE L1 5369 6296 -7 548 43 0 0 chr15 19142993 19143062 -66552692 - MER41A LTR ERV1 -86 468 400 596 220 15 8 chr15 19143064 19143196 -66552558 - FLAM_A SINE Alu 0 133 1 426 277 214 10 chr15 19143300 19143506 -66552248 - MIR SINE MIR -13 249 2 1677 168 18 11 chr15 19143543 19143829 -66551925 + AluJo SINE Alu 1 288 -24 2092 136 3 0 chr15 19143837 19144139 -66551615 + AluSx SINE Alu 1 303 -9 693 183 48 0 chr15 19144150 19144276 -66551478 + FLAM_C SINE Alu 2 133 0 2236 104 7 3 chr15 19144553 19144851 -66550903 + AluSx SINE Alu 1 299 -13 780 219 166 33 chr15 19144877 19145178 -66550576 - MER2 DNA MER2_type 0 344 4 2334 80 3 17 chr15 19145386 19145688 -66550066 + AluSx SINE Alu 1 298 -14 1746 171 25 0 chr15 19145862 19146142 -66549612 + AluSx SINE Alu 1 287 -25 2579 50 0 0 chr15 19146462 19146760 -66548994 - AluY SINE Alu -13 298 1 2167 98 28 0 chr15 19146760 19147047 -66548707 - AluSg SINE Alu -15 295 1 2238 114 0 3 chr15 19147570 19147869 -66547885 - AluSg SINE Alu -12 298 1 2202 119 0 10 chr15 19147899 19148201 -66547553 - AluSx SINE Alu -13 299 1 1205 163 202 0 chr15 19148981 19149233 -66546521 + AluJo SINE Alu 1 303 -9 1617 156 33 11 chr15 19149241 19149516 -66546238 + AluJb SINE Alu 1 281 -31 243 0 0 0 chr15 19149516 19149543 -66546211 + (CA)n Simple_repeat Simple_repeat 1 27 0 189 333 0 38 chr15 19150089 19150194 -66545560 + L2 LINE L2 1806 1906 -1408 584 203 101 0 chr15 19150207 19150355 -66545399 - L1ME4a LINE L1 -4 6117 5955 598 208 15 15 chr15 19150898 19151028 -66544726 + MER5A DNA MER1_type 60 189 0 2241 70 0 11 chr15 19154135 19154450 -66541304 - AluY SINE Alu 0 312 1 216 0 0 0 chr15 19154467 19154491 -66541263 + (A)n Simple_repeat Simple_repeat 1 24 0 894 149 11 96 chr15 19154816 19155004 -66540750 + AluJb SINE Alu 133 304 -8 183 300 82 27 chr15 19155033 19155143 -66540611 - MIR3 SINE MIR -7 201 86 226 274 0 0 chr15 19155278 19155329 -66540425 - LTR69 LTR ERVL -4 584 534 2403 81 3 0 chr15 19155372 19155667 -66540087 - AluY SINE Alu -15 296 1 1805 138 29 0 chr15 19155684 19155960 -66539794 - AluSx SINE Alu 0 312 29 228 100 0 0 chr15 19156072 19156102 -66539652 + Alu SINE Alu 14 43 -259 374 74 0 0 chr15 19156372 19156426 -66539328 - AluSc SINE Alu 0 299 246 21 0 0 0 chr15 19156820 19156841 -66538913 + AT_rich Low_complexity Low_complexity 1 21 0 411 98 81 40 chr15 19157332 19157505 -66538249 + (TA)n Simple_repeat Simple_repeat 1 180 0 2254 75 0 7 chr15 19157505 19157783 -66537971 - AluY SINE Alu -26 285 10 1524 121 0 130 chr15 19157782 19158105 -66537649 - AluSq SINE Alu -32 281 1 * 529 261 37 22 chr15 19158130 19158264 -66537490 + MER58B DNA MER1_type 1 136 -205 2013 122 17 3 chr15 19158264 19158551 -66537203 + AluSx SINE Alu 1 291 -21 2397 105 0 3 chr15 19158912 19159225 -66536529 - AluSx SINE Alu 0 312 1 2290 75 7 0 chr15 19159887 19160166 -66535588 - AluSp SINE Alu -12 301 21 296 189 0 0 chr15 19160455 19160508 -66535246 - Alu SINE Alu -255 53 1 187 265 88 0 chr15 19160824 19160892 -66534862 + MIR SINE MIR 68 141 -121 657 204 156 0 chr15 19161192 19161359 -66534395 - L1MB4 LINE L1 0 6180 5988 2066 139 3 0 chr15 19161399 19161693 -66534061 - AluSx SINE Alu -17 295 1 1767 151 0 45 chr15 19161747 19161898 -66533856 - AluJo SINE Alu -29 283 150 2381 72 7 0 chr15 19161898 19162189 -66533565 - AluSc SINE Alu -16 293 1 1767 151 0 45 chr15 19162189 19162328 -66533426 - AluJo SINE Alu -162 150 6 856 209 50 0 chr15 19162668 19162850 -66532904 - MER58B DNA MER1_type -4 337 147 2027 113 0 42 chr15 19162852 19163161 -66532593 - AluSx SINE Alu -14 298 3 395 268 24 31 chr15 19163163 19163290 -66532464 - AluSg/x SINE Alu 0 300 175 2141 79 0 25 chr15 19163605 19163883 -66531871 - AluY SINE Alu -40 271 1 1896 162 0 3 chr15 19163932 19164228 -66531526 + AluJo SINE Alu 1 295 -17 210 244 0 0 chr15 19164304 19164349 -66531405 + (TAG)n Simple_repeat Simple_repeat 1 45 0 884 163 59 0 chr15 19164394 19164547 -66531207 - AluJb SINE Alu -14 298 137 1390 193 36 103 chr15 19164870 19164975 -66530779 + L1MC4 LINE L1 7554 7664 -378 573 226 40 16 chr15 19164975 19165099 -66530655 - FLAM_A SINE Alu -6 127 1 1390 193 36 103 chr15 19165099 19165134 -66530620 + L1MC4 LINE L1 7664 7700 -342 1773 151 21 11 chr15 19165134 19165418 -66530336 + AluJb SINE Alu 1 287 -25 1390 193 36 103 chr15 19165418 19165800 -66529954 + L1MC4 LINE L1 7700 8042 0 1142 188 118 30 chr15 19165879 19166150 -66529604 - AluJo SINE Alu -6 296 2 223 321 26 62 chr15 19167010 19167207 -66528547 + MIR3 SINE MIR 2 189 -57 860 151 145 38 chr15 19167237 19167423 -66528331 + AluJb SINE Alu 84 289 -23 2042 125 10 7 chr15 19167573 19167870 -66527884 + AluSx SINE Alu 1 298 -14 2041 154 0 13 chr15 19168086 19168391 -66527363 + AluSx SINE Alu 1 301 -11 2292 111 10 0 chr15 19168394 19168700 -66527054 + AluSc SINE Alu 1 309 0 2222 115 6 16 chr15 19169374 19169686 -66526068 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr15 19169722 19169744 -66526010 + AT_rich Low_complexity Low_complexity 1 22 0 800 170 0 22 chr15 19170043 19170178 -66525576 - FLAM_C SINE Alu 0 133 2 2279 100 0 3 chr15 19170221 19170521 -66525233 - AluSq SINE Alu -8 305 7 186 320 26 26 chr15 19170700 19170778 -66524976 - L2 LINE L2 -494 2820 2743 405 0 0 0 chr15 19170778 19170823 -66524931 + (TG)n Simple_repeat Simple_repeat 2 46 0 392 242 180 31 chr15 19170936 19171064 -66524690 + MER5A DNA MER1_type 34 180 -9 2255 105 0 3 chr15 19171311 19171605 -66524149 + AluSc SINE Alu 1 293 -16 268 340 58 0 chr15 19171681 19171837 -66523917 - L2 LINE L2 -974 2340 2176 1936 156 0 3 chr15 19172513 19172802 -66522952 + AluJb SINE Alu 6 293 -19 2351 86 0 17 chr15 19172812 19172947 -66522807 + AluSg SINE Alu 1 137 -173 2150 123 0 16 chr15 19172947 19173257 -66522497 + AluSx SINE Alu 1 305 -7 2351 86 0 17 chr15 19173257 19173422 -66522332 + AluSg SINE Alu 137 296 -14 2897 153 66 21 chr15 19173498 19173601 -66522153 + MER68 LTR ERV1 1 98 -464 1386 214 127 11 chr15 19173601 19173956 -66521798 - MSTD LTR MaLR 0 396 1 2897 153 66 21 chr15 19173956 19174382 -66521372 + MER68 LTR ERV1 98 554 -8 2035 144 0 22 chr15 19174678 19174997 -66520757 - AluJb SINE Alu 0 312 1 1613 172 40 7 chr15 19175626 19175928 -66519826 - AluJo SINE Alu 0 312 1 766 125 211 47 chr15 19176340 19176377 -66519377 + Tigger2 DNA MER2_type 6 36 -2682 2321 99 7 0 chr15 19176377 19176670 -66519084 - AluSc SINE Alu -14 295 1 766 125 211 47 chr15 19176670 19176734 -66519020 + Tigger2 DNA MER2_type 36 88 -2630 2247 105 10 0 chr15 19176734 19177039 -66518715 + AluSp SINE Alu 1 308 -5 766 125 211 47 chr15 19177039 19177213 -66518541 + Tigger2 DNA MER2_type 88 365 -2353 2872 133 79 6 chr15 19178075 19178555 -66517199 + Tigger2 DNA MER2_type 350 864 -1854 21 0 0 0 chr15 19178557 19178578 -66517176 + AT_rich Low_complexity Low_complexity 1 21 0 307 83 0 21 chr15 19178765 19178813 -66516941 - Alu SINE Alu -251 48 2 4195 93 30 71 chr15 19178817 19178854 -66516900 + Tigger2 DNA MER2_type 851 888 -1830 2201 113 0 0 chr15 19178854 19179188 -66516566 + AluSx SINE Alu 1 334 0 4195 93 30 71 chr15 19179188 19179242 -66516512 + Tigger2 DNA MER2_type 888 943 -1775 2338 102 3 6 chr15 19179242 19179555 -66516199 + AluSx SINE Alu 1 312 0 4195 93 30 71 chr15 19179555 19180151 -66515603 + Tigger2 DNA MER2_type 943 1512 -1206 2176 114 10 0 chr15 19180151 19180450 -66515304 - AluSx SINE Alu -10 302 1 2547 62 0 0 chr15 19182650 19182957 -66512797 - AluY SINE Alu -4 307 1 2282 98 30 0 chr15 19183611 19183906 -66511848 - AluSx SINE Alu -8 304 1 195 204 0 0 chr15 19185066 19185115 -66510639 + GA-rich Low_complexity Low_complexity 4 52 0 2056 91 11 21 chr15 19186042 19186329 -66509425 + AluSg SINE Alu 6 289 -21 1410 199 62 21 chr15 19187372 19187663 -66508091 + AluJo SINE Alu 1 303 -9 819 221 0 12 chr15 19188199 19188362 -66507392 - FRAM SINE Alu -5 161 1 492 292 28 48 chr15 19188397 19188647 -66507107 + MIR SINE MIR 15 259 -3 2064 123 57 29 chr15 19190373 19190723 -66505031 + MER46B DNA MER2_type 2 236 0 1704 181 0 4 chr15 19192383 19192659 -66503095 - AluJb SINE Alu -37 275 1 30 27 0 0 chr15 19192782 19192819 -66502935 + AT_rich Low_complexity Low_complexity 1 37 0 2218 103 7 10 chr15 19193066 19193367 -66502387 - AluSp SINE Alu -11 302 3 246 32 0 0 chr15 19193713 19193744 -66502010 + (TG)n Simple_repeat Simple_repeat 2 32 0 2089 117 12 55 chr15 19194293 19194619 -66501135 - AluSx SINE Alu 0 312 1 879 165 0 0 chr15 19194729 19194856 -66500898 - FLAM_C SINE Alu -16 127 1 1136 204 113 6 chr15 19194856 19195112 -66500642 - L1ME1 LINE L1 -33 6133 5855 2290 101 7 0 chr15 19195112 19195409 -66500345 - AluSq SINE Alu -14 299 1 1136 204 113 6 chr15 19195409 19195438 -66500316 - L1ME1 LINE L1 -311 5855 5831 2087 143 0 19 chr15 19195454 19195768 -66499986 - AluJo SINE Alu -4 308 1 2108 193 42 0 chr15 19196079 19196488 -66499266 - MSTB LTR MaLR 0 426 1 983 130 34 45 chr15 19196552 19196711 -66499043 - MER20 DNA MER1_type 0 219 61 2275 111 0 0 chr15 19196711 19197009 -66498745 + AluSx SINE Alu 1 298 -14 983 130 34 45 chr15 19197009 19197026 -66498728 - MER20 DNA MER1_type -158 61 45 188 229 260 21 chr15 19197029 19197125 -66498629 - MIR3 SINE MIR -48 160 42 355 302 188 10 chr15 19197334 19197536 -66498218 - MIR SINE MIR -13 249 12 436 269 86 11 chr15 19197593 19197779 -66497975 - MIR SINE MIR -55 207 8 2357 100 3 0 chr15 19197940 19198249 -66497505 - AluSx SINE Alu -2 310 1 596 273 87 0 chr15 19198392 19198575 -66497179 + MIR SINE MIR 31 229 -33 2568 55 0 16 chr15 19199157 19199466 -66496288 - AluY SINE Alu 0 311 8 232 185 19 0 chr15 19199566 19199620 -66496134 + GA-rich Low_complexity Low_complexity 1 55 0 300 316 59 0 chr15 19200775 19200911 -66494843 - MIR SINE MIR -114 148 5 1149 208 168 0 chr15 19202607 19202857 -66492897 - AluJb SINE Alu -8 294 3 2159 111 3 10 chr15 19202877 19203040 -66492714 - AluSx SINE Alu -16 296 134 2165 119 3 3 chr15 19203040 19203342 -66492412 - AluSx SINE Alu -10 302 1 2159 111 3 10 chr15 19203342 19203476 -66492278 - AluSx SINE Alu -178 134 1 594 63 0 0 chr15 19203476 19203555 -66492199 + (TG)n Simple_repeat Simple_repeat 2 80 0 2439 64 0 0 chr15 19203555 19203838 -66491916 - AluY SINE Alu -28 283 1 317 327 60 52 chr15 19203845 19204096 -66491658 - L1M4 LINE L1 -988 5158 4906 1161 146 110 0 chr15 19204102 19204321 -66491433 - L1MA4 LINE L1 -5 6295 6053 2159 124 13 0 chr15 19204419 19204726 -66491028 - AluSx SINE Alu 0 312 2 197 330 58 58 chr15 19204870 19205058 -66490696 + L2 LINE L2 2858 3045 -227 224 315 153 0 chr15 19205243 19205354 -66490400 - L2 LINE L2 0 3272 3145 264 159 143 0 chr15 19205908 19205971 -66489783 - L2 LINE L2 0 3272 3201 2396 98 3 0 chr15 19206022 19206327 -66489427 - AluSp SINE Alu -2 311 6 5693 71 18 16 chr15 19206370 19207145 -66488609 - SVA Other Other 0 1386 610 1946 136 27 7 chr15 19207350 19207651 -66488103 - AluSx SINE Alu -5 307 1 2577 179 91 62 chr15 19207881 19208489 -66487265 - MER51A LTR ERV1 -9 625 1 303 122 0 0 chr15 19208674 19208738 -66487016 - AluSg SINE Alu 0 307 244 1192 145 28 0 chr15 19208738 19208917 -66486837 - AluSg SINE Alu -121 189 6 2511 172 41 120 chr15 19208989 19209739 -66486015 - LTR8 LTR ERV1 0 691 1 279 340 90 13 chr15 19209862 19210018 -66485736 - L2 LINE L2 -1 3271 3104 2202 124 3 16 chr15 19210134 19210449 -66485305 - AluJo SINE Alu -1 311 1 278 274 186 0 chr15 19211602 19211726 -66484028 - MIR SINE MIR -6 256 110 1885 157 0 20 chr15 19211962 19212268 -66483486 - AluJb SINE Alu -12 300 1 987 127 0 0 chr15 19212474 19212608 -66483146 - FRAM SINE Alu -32 144 11 2399 107 0 0 chr15 19212702 19213010 -66482744 - AluSx SINE Alu 0 312 5 384 59 0 0 chr15 19213147 19213198 -66482556 + (CA)n Simple_repeat Simple_repeat 2 52 0 2293 105 3 0 chr15 19214955 19215249 -66480505 - AluSg SINE Alu -15 295 1 2115 142 0 0 chr15 19215322 19215631 -66480123 + AluSx SINE Alu 1 309 -3 801 259 119 16 chr15 19215692 19216049 -66479705 + MLT1I LTR MaLR 1 501 -10 2423 91 7 0 chr15 19216049 19216358 -66479396 - AluSq SINE Alu -2 311 1 1088 226 5 9 chr15 19216635 19216852 -66478902 + MER58A DNA MER1_type 1 216 -8 1851 141 0 31 chr15 19217471 19217789 -66477965 - AluJo SINE Alu 0 309 1 2086 136 7 0 chr15 19218214 19218522 -66477232 + AluSx SINE Alu 1 310 -2 632 241 77 0 chr15 19218977 19219147 -66476607 + MIR SINE MIR 59 241 -21 2164 133 0 0 chr15 19219194 19219495 -66476259 + AluSx SINE Alu 1 301 -11 2170 107 17 0 chr15 19219542 19219831 -66475923 + AluSg SINE Alu 1 294 -16 556 299 67 42 chr15 19219835 19220196 -66475558 + L1MC/D LINE L1 5273 5623 -683 2355 90 0 0 chr15 19220196 19220495 -66475259 + AluSg SINE Alu 1 299 -11 556 299 67 42 chr15 19220495 19220525 -66475229 + L1MC/D LINE L1 5623 5651 -655 1917 136 17 7 chr15 19220525 19220820 -66474934 - AluSx SINE Alu -14 298 1 556 299 67 42 chr15 19220820 19220939 -66474815 + L1MC/D LINE L1 5651 5809 -497 23 36 0 54 chr15 19220996 19221052 -66474702 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr15 19221088 19221109 -66474645 + AT_rich Low_complexity Low_complexity 1 21 0 277 191 26 104 chr15 19222082 19222121 -66473633 + MIR SINE MIR 111 151 -111 2489 87 0 0 chr15 19222121 19222432 -66473322 + AluY SINE Alu 1 311 0 277 191 26 104 chr15 19222432 19222507 -66473247 + MIR SINE MIR 151 216 -46 186 322 17 0 chr15 19222647 19222706 -66473048 + L2 LINE L2 3252 3311 -2 988 117 0 0 chr15 19222877 19223014 -66472740 - AluSp/q SINE Alu -16 297 161 1712 185 3 19 chr15 19223257 19223570 -66472184 - AluJb SINE Alu -4 308 1 1975 130 7 0 chr15 19223667 19223944 -66471810 - AluJo SINE Alu -33 279 1 306 304 37 92 chr15 19223951 19224105 -66471649 - L1M4 LINE L1 -2700 3446 3285 1894 108 104 0 chr15 19224105 19224383 -66471371 - AluSc SINE Alu -2 307 1 306 304 37 92 chr15 19224383 19224577 -66471177 - L1M4 LINE L1 -2861 3285 3117 919 216 46 27 chr15 19224613 19224879 -66470875 - L1ME1 LINE L1 -18 6148 5881 1140 139 80 15 chr15 19224879 19225080 -66470674 + AluJo SINE Alu 86 299 -13 1204 146 9 82 chr15 19225080 19225300 -66470454 - Charlie3 DNA MER1_type -2455 255 52 958 95 51 0 chr15 19225666 19225803 -66469951 - LTR23 LTR ERV1 -1 436 293 1293 132 6 0 chr15 19225822 19226004 -66469750 + AluJb SINE Alu 112 294 -18 1379 183 202 79 chr15 19226007 19226240 -66469514 - L1MC4 LINE L1 -265 7777 7574 2045 114 4 0 chr15 19226240 19226558 -66469196 - AluSx SINE Alu 0 327 9 1379 183 202 79 chr15 19226558 19226803 -66468951 - L1MC4 LINE L1 -468 7574 7238 258 175 50 12 chr15 19226828 19226908 -66468846 - L1MC4 LINE L1 -959 7083 7001 2251 169 23 8 chr15 19226909 19227299 -66468455 - MER57A LTR ERV1 0 403 8 910 219 131 25 chr15 19227318 19227555 -66468199 - L1MC4 LINE L1 -1228 6814 6553 823 193 62 0 chr15 19227645 19227806 -66467948 + FRAM SINE Alu 1 171 -5 252 59 0 0 chr15 19227847 19227881 -66467873 + (TC)n Simple_repeat Simple_repeat 2 35 0 814 219 12 0 chr15 19227882 19228042 -66467712 - FRAM SINE Alu -4 162 1 2397 92 0 0 chr15 19228482 19228776 -66466978 + AluSp SINE Alu 1 294 -19 26 64 0 0 chr15 19229764 19229811 -66465943 + AT_rich Low_complexity Low_complexity 1 47 0 230 161 32 97 chr15 19229947 19230040 -66465714 + L1ME4a LINE L1 5943 6029 -92 2101 127 0 0 chr15 19230055 19230347 -66465407 - AluSx SINE Alu -5 307 16 2092 138 7 0 chr15 19230550 19230840 -66464914 - AluSx SINE Alu -20 292 1 2282 102 3 0 chr15 19230849 19231143 -66464611 - AluSx SINE Alu -17 295 1 189 147 0 0 chr15 19231147 19231181 -66464573 + (T)n Simple_repeat Simple_repeat 1 34 0 2189 116 0 7 chr15 19231438 19231741 -66464013 - AluSx SINE Alu -10 302 2 1044 152 0 0 chr15 19231768 19232013 -66463741 + CT-rich Low_complexity Low_complexity 1 245 0 2175 92 3 54 chr15 19232013 19232330 -66463424 - AluSq SINE Alu -12 301 1 712 169 0 29 chr15 19232371 19232507 -66463247 - AluJb SINE Alu -18 294 163 331 188 0 0 chr15 19232509 19232567 -66463187 - Alu SINE Alu -249 51 1 1751 158 0 4 chr15 19232570 19232830 -66462924 + AluJb SINE Alu 40 298 -14 6994 197 54 64 chr15 19232830 19234540 -66461214 - L1MA3 LINE L1 -10 7714 5989 1582 205 7 3 chr15 19234540 19234837 -66460917 - AluJb SINE Alu -14 298 1 6994 197 54 64 chr15 19234837 19235510 -66460244 - L1MA3 LINE L1 -1735 5989 5311 2241 122 0 6 chr15 19235510 19235821 -66459933 - AluSc SINE Alu 0 309 1 6994 197 54 64 chr15 19235821 19236568 -66459186 - L1MA3 LINE L1 -2413 5311 4558 682 138 0 0 chr15 19236568 19236662 -66459092 - AluJ/FLAM SINE Alu -217 95 2 6994 197 54 64 chr15 19236662 19236819 -66458935 - L1MA3 LINE L1 -3166 4558 4401 1755 179 10 0 chr15 19236819 19237115 -66458639 + AluSx SINE Alu 1 299 -13 6994 197 54 64 chr15 19237115 19238232 -66457522 - L1MA3 LINE L1 -3323 4401 3270 878 193 0 0 chr15 19238233 19238378 -66457376 + FRAM SINE Alu 20 164 -12 1828 162 7 10 chr15 19238379 19238681 -66457073 + AluJb SINE Alu 1 301 -11 427 258 24 0 chr15 19238722 19238846 -66456908 - MIR SINE MIR -57 205 79 2254 110 3 3 chr15 19239153 19239462 -66456292 - AluSx SINE Alu -3 309 1 224 264 14 42 chr15 19240133 19240205 -66455549 + L2 LINE L2 3244 3313 0 21 57 0 0 chr15 19240280 19240315 -66455439 + AT_rich Low_complexity Low_complexity 1 35 0 955 139 73 0 chr15 19240643 19240794 -66454960 + AluSp SINE Alu 137 298 -15 2373 77 0 0 chr15 19240861 19241147 -66454607 - AluY SINE Alu -25 286 1 1699 171 3 21 chr15 19241533 19241820 -66453934 + AluJb SINE Alu 2 283 -29 2165 125 0 0 chr15 19241820 19242116 -66453638 + AluSg SINE Alu 1 297 -13 2308 112 6 6 chr15 19242302 19242615 -66453139 + AluSq SINE Alu 1 313 0 2000 149 0 7 chr15 19242726 19243034 -66452720 - AluJb SINE Alu -6 306 1 721 117 0 0 chr15 19243943 19244046 -66451708 + AluSg/x SINE Alu 199 301 -9 215 328 0 16 chr15 19244110 19244174 -66451580 - MIR SINE MIR -130 78 16 739 307 119 32 chr15 19244400 19244837 -66450917 - L2 LINE L2 -4 3309 2835 2087 135 0 7 chr15 19245101 19245398 -66450356 + AluSx SINE Alu 3 297 -15 1683 199 17 0 chr15 19245435 19245737 -66450017 - AluJo SINE Alu -5 307 1 2359 80 7 7 chr15 19246059 19246361 -66449393 + AluSc SINE Alu 1 302 -7 222 269 92 50 chr15 19246394 19246513 -66449241 - MIR3 SINE MIR -31 177 54 1629 59 31 9 chr15 19246885 19247107 -66448647 - L1PA5 LINE L1 0 6154 5928 2443 81 7 3 chr15 19247115 19247425 -66448329 - AluSp SINE Alu -2 311 1 199 262 16 33 chr15 19247681 19247742 -66448012 - L2 LINE L2 -8 3305 3246 397 240 133 33 chr15 19248133 19248283 -66447471 - L1MEc LINE L1 -1985 4441 4277 233 29 114 0 chr15 19248283 19248318 -66447436 - MER5C DNA MER1_type -4 320 282 1260 173 0 23 chr15 19248327 19248541 -66447213 - AluJo SINE Alu -19 293 85 541 155 130 6 chr15 19248541 19248702 -66447052 - MER5C DNA MER1_type -26 298 118 2268 120 3 0 chr15 19248709 19249017 -66446737 - AluSx SINE Alu -3 309 1 1529 108 38 46 chr15 19249036 19249276 -66446478 - AluSg SINE Alu -31 279 42 892 243 23 0 chr15 19249278 19249537 -66446217 - L1MEc LINE L1 -3113 3313 3049 7150 123 41 14 chr15 19249555 19249733 -66446021 - Tigger1 DNA MER2_type 0 2418 2246 2450 75 0 0 chr15 19249733 19250027 -66445727 + AluY SINE Alu 1 294 -17 7150 123 41 14 chr15 19250027 19251085 -66444669 - Tigger1 DNA MER2_type -172 2246 1153 1510 133 90 18 chr15 19251085 19251363 -66444391 - AluJb SINE Alu -14 298 1 7150 123 41 14 chr15 19251363 19251408 -66444346 - Tigger1 DNA MER2_type -1265 1153 1111 410 157 27 0 chr15 19251406 19251480 -66444274 + AluS SINE Alu 8 70 -233 * 1314 124 0 0 chr15 19251594 19251814 -66443940 + AluSq SINE Alu 108 327 0 6088 126 30 3 chr15 19251816 19252739 -66443015 - Tigger1 DNA MER2_type -1300 1118 171 1239 278 50 24 chr15 19252749 19253558 -66442196 - L1MEc LINE L1 -3398 3028 2234 2095 127 0 0 chr15 19253772 19254071 -66441683 - AluSx SINE Alu -13 299 1 302 265 72 0 chr15 19254075 19254210 -66441544 - L1M2 LINE L1 -4338 2089 1538 361 298 137 18 chr15 19254212 19254380 -66441374 - L1MEd LINE L1 -4910 1474 1287 710 167 0 9 chr15 19254517 19254631 -66441123 - FLAM_A SINE Alu -16 126 14 451 206 50 44 chr15 19254632 19254643 -66441111 - L1MEd LINE L1 -5034 1338 1329 2164 102 0 0 chr15 19254643 19254936 -66440818 - AluSg SINE Alu -17 293 1 451 206 50 44 chr15 19254936 19255104 -66440650 - L1MEd LINE L1 -5043 1329 1158 1819 137 7 17 chr15 19255171 19255471 -66440283 - AluSq SINE Alu -16 297 1 2183 93 13 0 chr15 19255471 19255771 -66439983 - AluSp SINE Alu -9 304 1 239 352 70 39 chr15 19256012 19256242 -66439512 + L2 LINE L2 2963 3199 -73 181 216 39 20 chr15 19256261 19256312 -66439442 + MIR SINE MIR 141 192 -70 252 303 204 23 chr15 19256347 19256479 -66439275 + L2 LINE L2 3113 3268 -4 270 216 81 14 chr15 19257517 19257591 -66438163 + L3b LINE CR1 1362 1440 -143 206 83 56 0 chr15 19257759 19257795 -66437959 + A-rich Low_complexity Low_complexity 4 41 0 1910 136 3 10 chr15 19258277 19258586 -66437168 - AluSx SINE Alu -5 307 1 994 247 129 57 chr15 19258981 19260043 -66435711 + L1ME1 LINE L1 1317 2607 -3956 * 5861 147 36 30 chr15 19260015 19260608 -66435146 + L1PB1 LINE L1 4353 4941 -1446 2222 87 3 3 chr15 19260608 19260906 -66434848 + AluSx SINE Alu 1 298 -14 5861 147 36 30 chr15 19260906 19261683 -66434071 + L1PB1 LINE L1 4941 5736 -651 1662 125 87 3 chr15 19261683 19261971 -66433783 + AluSx SINE Alu 1 312 0 5861 147 36 30 chr15 19261971 19262626 -66433128 + L1PB1 LINE L1 5736 6386 -1 1393 210 55 31 chr15 19262621 19262682 -66433072 + L1ME1 LINE L1 2540 2598 -3784 * 2187 106 0 10 chr15 19262682 19262983 -66432771 + AluSq SINE Alu 1 298 -15 1393 210 55 31 chr15 19262983 19263340 -66432414 + L1ME1 LINE L1 2598 2968 -3414 2692 201 86 47 chr15 19263345 19263761 -66431993 + L1ME1 LINE L1 4984 5382 -1020 1714 154 10 17 chr15 19263761 19263896 -66431858 - AluJb SINE Alu -21 291 157 270 0 0 0 chr15 19263896 19263926 -66431828 + (TG)n Simple_repeat Simple_repeat 2 31 0 1714 154 10 17 chr15 19263926 19264083 -66431671 - AluJb SINE Alu -155 157 1 2051 130 0 3 chr15 19264091 19264391 -66431363 - AluSx SINE Alu -13 299 1 2692 201 86 47 chr15 19264391 19264438 -66431316 + L1ME1 LINE L1 5388 5432 -970 1959 137 10 3 chr15 19264438 19264745 -66431009 + AluSx SINE Alu 1 309 -3 2692 201 86 47 chr15 19264745 19265121 -66430633 + L1ME1 LINE L1 5432 5792 -610 1926 132 7 3 chr15 19265121 19265431 -66430323 - AluY SINE Alu 0 311 1 2692 201 86 47 chr15 19265431 19265850 -66429904 + L1ME1 LINE L1 5792 6288 -114 2182 104 3 3 chr15 19265895 19266203 -66429551 + AluSq SINE Alu 6 313 0 578 177 65 108 chr15 19267009 19267053 -66428701 + MER5B DNA MER1_type 1 45 -133 1430 176 60 25 chr15 19267053 19267215 -66428539 - AluJo SINE Alu -18 294 116 231 36 0 0 chr15 19267215 19267243 -66428511 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 1430 176 60 25 chr15 19267243 19267364 -66428390 - AluJo SINE Alu -196 116 1 578 177 65 108 chr15 19267364 19267505 -66428249 + MER5B DNA MER1_type 45 178 0 21 71 0 0 chr15 19267547 19267589 -66428165 + AT_rich Low_complexity Low_complexity 1 42 0 750 133 0 89 chr15 19267622 19267757 -66427997 + FLAM_A SINE Alu 11 133 -9 532 146 0 0 chr15 19269806 19269895 -66425859 - AluJ/FRAM SINE Alu 0 312 224 1579 207 0 10 chr15 19269965 19270274 -66425480 - AluJb SINE Alu -6 306 1 324 0 0 0 chr15 19270397 19270433 -66425321 + (CA)n Simple_repeat Simple_repeat 2 37 0 964 169 38 11 chr15 19270561 19270744 -66425010 - MER5A DNA MER1_type -1 188 1 207 265 20 0 chr15 19271796 19271845 -66423909 - L2 LINE L2 -84 3229 3180 207 336 26 17 chr15 19272238 19272354 -66423400 - L2 LINE L2 -589 2725 2609 2083 136 0 0 chr15 19272413 19272722 -66423032 - AluSx SINE Alu -3 309 1 2307 90 0 0 chr15 19272783 19273084 -66422670 - AluSg SINE Alu -3 307 7 1988 116 14 3 chr15 19273092 19273384 -66422370 - AluSq SINE Alu -17 296 2 182 339 36 0 chr15 19273659 19273715 -66422039 + MIR SINE MIR 40 97 -165 294 130 0 0 chr15 19274475 19274529 -66421225 - L1ME4a LINE L1 -1 6120 6067 240 275 147 18 chr15 19275131 19275240 -66420514 + MIR SINE MIR 23 145 -63 2178 138 0 0 chr15 19275375 19275686 -66420068 + AluSq SINE Alu 1 311 -2 2082 119 0 19 chr15 19276734 19276894 -66418860 - AluSx SINE Alu -6 306 153 3402 103 34 16 chr15 19276894 19277398 -66418356 - LTR10D LTR ERV1 0 513 1 2082 119 0 19 chr15 19277398 19277549 -66418205 - AluSx SINE Alu -159 153 1 191 30 0 61 chr15 19277747 19277780 -66417974 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 2219 104 0 0 chr15 19278423 19278722 -66417032 + AluSx SINE Alu 1 299 -13 2179 116 3 0 chr15 19278727 19279037 -66416717 + AluSq SINE Alu 1 311 -2 514 316 50 9 chr15 19279078 19279296 -66416458 + MIR SINE MIR 24 250 -12 432 217 237 7 chr15 19280792 19280944 -66414810 + MIR SINE MIR 76 262 0 190 222 19 56 chr15 19281194 19281248 -66414506 + L2 LINE L2 3258 3309 -4 1988 105 0 45 chr15 19282578 19282891 -66412863 + AluSc SINE Alu 1 299 -10 376 303 76 17 chr15 19283218 19283398 -66412356 + MIR SINE MIR 8 203 -37 1261 183 23 5 chr15 19285240 19285459 -66410295 - MER58A DNA MER1_type 0 224 2 2194 112 0 0 chr15 19285925 19286221 -66409533 + AluSx SINE Alu 1 296 -16 316 221 84 69 chr15 19286272 19286403 -66409351 - L1MC5 LINE L1 -121 7840 7708 256 316 42 0 chr15 19288732 19288827 -66406927 + L2 LINE L2 3162 3260 -12 228 264 70 97 chr15 19288887 19289519 -66406235 - L1MC4 LINE L1 -2 8040 7292 204 338 0 0 chr15 19291020 19291091 -66404663 + (CCCCAG)n Simple_repeat Simple_repeat 1 71 0 644 311 184 33 chr15 19301672 19302629 -66393125 - L2 LINE L2 -1 3312 2206 260 200 21 100 chr15 19302777 19302886 -66392868 - L1MC4a LINE L1 -1889 5919 5822 767 189 0 0 chr15 19302886 19303008 -66392746 - FLAM_C SINE Alu -11 122 1 260 200 21 100 chr15 19303008 19303038 -66392716 - L1MC4a LINE L1 -1986 5822 5791 2024 162 26 0 chr15 19303126 19303478 -66392276 + MER46B DNA MER2_type 1 236 0 1266 273 173 18 chr15 19303588 19304500 -66391254 - L1MC4a LINE L1 -753 5393 4885 351 120 53 53 chr15 19304642 19304717 -66391037 - L1MA6 LINE L1 0 7260 7186 5761 194 53 13 chr15 19304844 19305130 -66390624 - L1MA6 LINE L1 -68 7192 6919 2474 61 3 0 chr15 19305130 19305440 -66390314 - AluY SINE Alu 0 311 1 1959 139 0 0 chr15 19305443 19305737 -66390017 - AluSx SINE Alu -1 311 18 5761 194 53 13 chr15 19305737 19307295 -66388459 - L1MA6 LINE L1 -342 6918 5266 651 160 19 0 chr15 19307295 19307401 -66388353 + LTR59 LTR ERV1 1 108 -489 2070 112 7 7 chr15 19307421 19307725 -66388029 + AluSg SINE Alu 1 304 -6 1114 157 0 0 chr15 19307725 19307903 -66387851 + LTR59 LTR ERV1 85 262 -335 2255 96 0 0 chr15 19307909 19308210 -66387544 - AluSg SINE Alu -9 301 1 2097 192 7 7 chr15 19308210 19308653 -66387101 - L1MA6 LINE L1 -4385 2721 2279 787 179 0 8 chr15 19308679 19308802 -66386952 - FLAM_C SINE Alu -20 123 2 3424 241 46 86 chr15 19308803 19309059 -66386695 - L1MA6 LINE L1 -4809 2297 2032 2043 112 0 37 chr15 19309059 19309381 -66386373 - AluSg SINE Alu 0 310 1 3424 241 46 86 chr15 19309381 19309621 -66386133 - L1MA6 LINE L1 -5074 2032 1784 2300 70 0 10 chr15 19309621 19309919 -66385835 - AluSq SINE Alu -18 295 1 3424 241 46 86 chr15 19309919 19311117 -66384637 - L1MA6 LINE L1 -5322 1784 6 1544 166 10 28 chr15 19311152 19311442 -66384312 - AluSx SINE Alu -27 285 1 1831 186 0 6 chr15 19311444 19311756 -66383998 - AluSx SINE Alu -2 310 1 248 235 77 33 chr15 19311904 19312087 -66383667 - L1 LINE L1 -1658 4488 4298 2125 95 10 7 chr15 19312157 19312453 -66383301 - AluSx SINE Alu -15 297 1 261 243 116 64 chr15 19312611 19312784 -66382970 - L1 LINE L1 -2309 3837 3656 267 248 28 28 chr15 19313002 19313111 -66382643 + L1P3 LINE L1 5696 5804 -368 1667 113 0 8 chr15 19313172 19313420 -66382334 - AluSg SINE Alu -11 299 54 1415 175 77 0 chr15 19313595 19313869 -66381885 + AluJb SINE Alu 1 295 -17 896 240 18 22 chr15 19313994 19314219 -66381535 + MER58A DNA MER1_type 1 224 0 354 216 62 50 chr15 19314275 19314399 -66381355 - L1MC4a LINE L1 -257 7738 7617 510 188 30 0 chr15 19314399 19314500 -66381254 - U13 snRNA snRNA 0 104 1 354 216 62 50 chr15 19314500 19314581 -66381173 - L1MC4a LINE L1 -378 7617 7354 432 169 56 0 chr15 19314584 19314673 -66381081 + MER53 DNA DNA 2 95 -94 1542 218 66 66 chr15 19314685 19314821 -66380933 - L1MC4a LINE L1 -451 7357 7222 1382 175 43 14 chr15 19314821 19315101 -66380653 + AluJb SINE Alu 1 288 -24 1542 218 66 66 chr15 19315101 19315112 -66380642 - L1MC4a LINE L1 -586 7222 7212 1951 108 0 0 chr15 19315112 19315389 -66380365 + AluSg SINE Alu 1 277 -33 1542 218 66 66 chr15 19315389 19315765 -66379989 - L1MC4a LINE L1 -596 7212 6830 1791 132 10 16 chr15 19315765 19316069 -66379685 - AluJb SINE Alu -10 302 1 1542 218 66 66 chr15 19316069 19316088 -66379666 - L1MC4a LINE L1 -977 6831 6813 1219 139 130 9 chr15 19316091 19316337 -66379417 - L1MB4 LINE L1 -50 6130 5855 921 234 67 67 chr15 19316337 19316598 -66379156 - MLT1C LTR MaLR 0 467 204 216 0 0 0 chr15 19316598 19316622 -66379132 + (TC)n Simple_repeat Simple_repeat 2 25 0 921 234 67 67 chr15 19316622 19316642 -66379112 - MLT1C LTR MaLR -262 205 186 626 220 24 42 chr15 19316674 19316842 -66378912 - FRAM SINE Alu -4 172 8 2329 76 0 3 chr15 19316847 19317148 -66378606 - AluSx SINE Alu -12 300 1 735 202 40 17 chr15 19317156 19317329 -66378425 - MLT1C LTR MaLR -290 177 1 6878 201 85 33 chr15 19317331 19317772 -66377982 - L1MB4 LINE L1 -327 5857 5440 765 0 89 18 chr15 19317772 19317940 -66377814 + (TA)n Simple_repeat Simple_repeat 1 180 0 6878 201 85 33 chr15 19317940 19318555 -66377199 - L1MB4 LINE L1 -744 5440 4858 712 167 0 0 chr15 19318555 19318669 -66377085 - FLAM_C SINE Alu -19 114 1 6878 201 85 33 chr15 19318669 19319896 -66375858 - L1MB4 LINE L1 -1326 4858 3434 2334 52 0 13 chr15 19319896 19320203 -66375551 - AluY SINE Alu -8 303 1 6878 201 85 33 chr15 19320203 19320325 -66375429 - L1MB4 LINE L1 -2750 3434 3320 295 230 115 30 chr15 19320293 19320458 -66375296 - L1MB4 LINE L1 -3092 3054 2876 * 357 170 74 0 chr15 19320476 19320562 -66375192 - FLAM_A SINE Alu -49 84 18 375 298 12 71 chr15 19320568 19320736 -66375018 - L1 LINE L1 -1085 5061 4904 392 310 122 48 chr15 19320744 19321218 -66374536 - L2 LINE L2 -1064 2250 1742 821 155 0 62 chr15 19321235 19321358 -66374396 + AluJb SINE Alu 1 113 -199 1936 74 56 11 chr15 19321358 19321643 -66374111 - AluSx SINE Alu -14 298 1 821 155 0 62 chr15 19321643 19321680 -66374074 + AluJb SINE Alu 113 151 -161 908 150 0 0 chr15 19323040 19323173 -66372581 + FLAM_C SINE Alu 1 133 0 1884 138 3 10 chr15 19323178 19323476 -66372278 + AluJb SINE Alu 1 296 -16 2206 85 3 19 chr15 19327188 19327495 -66368259 + AluSx SINE Alu 1 302 -10 602 253 44 16 chr15 19327587 19327769 -66367985 - MER5A DNA MER1_type -2 187 1 1782 138 14 14 chr15 19328165 19328462 -66367292 - AluJb SINE Alu -15 297 1 712 203 20 34 chr15 19328806 19328954 -66366800 - FRAM SINE Alu -14 162 17 1834 119 4 14 chr15 19329569 19329847 -66365907 - AluSx SINE Alu -37 275 1 1933 114 52 0 chr15 19331548 19331837 -66363917 + AluSg SINE Alu 1 304 -6 190 294 55 28 chr15 19332672 19332781 -66362973 - L3b LINE CR1 -316 1267 1156 887 231 20 25 chr15 19332805 19333004 -66362750 - MER58A DNA MER1_type -26 198 1 217 256 22 44 chr15 19334371 19334461 -66361293 + GA-rich Low_complexity Low_complexity 1 88 0 236 318 164 9 chr15 19337815 19337925 -66357829 - MIR SINE MIR -122 140 14 2166 91 7 7 chr15 19339115 19339411 -66356343 - AluSq SINE Alu -17 296 1 1385 163 26 64 chr15 19340442 19340755 -66354999 - AluJb SINE Alu -11 301 1 1247 132 66 31 chr15 19343639 19343867 -66351887 - MER46A DNA MER2_type 0 236 1 288 301 12 0 chr15 19344419 19344502 -66351252 + L2 LINE L2 3227 3310 -3 769 194 157 8 chr15 19345118 19345366 -66350388 - MER33 DNA MER1_type -32 292 8 2215 141 21 24 chr15 19345600 19345976 -66349778 + THE1C LTR MaLR 1 375 0 11190 100 12 27 chr15 19345976 19347581 -66348173 + THE1C-int LTR MaLR 1 1580 0 2140 136 24 27 chr15 19347581 19347957 -66347797 + THE1C LTR MaLR 1 375 0 348 146 10 126 chr15 19348278 19348381 -66347373 - L1MB7 LINE L1 -19 6165 6075 2039 123 27 0 chr15 19348861 19349161 -66346593 + AluJb SINE Alu 5 312 0 5300 196 125 110 chr15 19349293 19350768 -66344986 - L1MCa LINE L1 -3976 2450 925 2725 7 0 0 chr15 19350768 19351071 -66344683 + AluYa5 SINE Alu 1 303 -8 5300 196 125 110 chr15 19351071 19351995 -66343759 - L1MCa LINE L1 -5501 925 16 2864 135 49 5 chr15 19352084 19352492 -66343262 - MSTB LTR MaLR 0 426 1 8413 174 90 11 chr15 19352492 19354022 -66341732 - MSTB-int LTR MaLR 0 1651 1 375 135 0 0 chr15 19354022 19354070 -66341684 - MSTB LTR MaLR 0 426 379 1379 150 191 24 chr15 19354070 19354364 -66341390 + THE1C LTR MaLR 1 343 -85 2248 145 38 11 chr15 19354373 19354745 -66341009 - MSTB LTR MaLR -44 382 1 319 115 58 0 chr15 19355572 19355624 -66340130 + MLT1C LTR MaLR 380 434 -33 715 196 119 26 chr15 19355940 19356134 -66339620 + L1MA9 LINE L1 6069 6280 -32 25 0 0 0 chr15 19356134 19356159 -66339595 + AT_rich Low_complexity Low_complexity 1 25 0 2132 45 4 0 chr15 19356392 19356639 -66339115 + L1PA4 LINE L1 5908 6155 0 683 46 0 23 chr15 19357371 19357458 -66338296 - L1PA8A LINE L1 -29 6102 6018 188 340 187 10 chr15 19358970 19359179 -66336575 + L2 LINE L2 2836 3081 -191 221 302 0 0 chr15 19359343 19359396 -66336358 + L2 LINE L2 3247 3299 -14 2085 107 4 0 chr15 19360006 19360311 -66335443 + AluSx SINE Alu 1 306 0 295 252 0 137 chr15 19360333 19360355 -66335399 + MIR SINE MIR 40 63 -145 422 251 11 99 chr15 19360355 19360546 -66335208 + MER5B DNA MER1_type 1 174 -4 295 252 0 137 chr15 19360546 19360654 -66335100 + MIR SINE MIR 63 152 -56 893 254 45 35 chr15 19361872 19362131 -66333623 + L1ME LINE L1 683 949 -5121 7947 173 151 39 chr15 19362131 19363709 -66332045 + MER52A LTR ERV1 1 1755 0 893 254 45 35 chr15 19363709 19363851 -66331903 + L1ME LINE L1 949 1088 -4982 2138 125 3 3 chr15 19363898 19364203 -66331551 + AluSq SINE Alu 1 305 -8 198 0 0 0 chr15 19364539 19364561 -66331193 + (A)n Simple_repeat Simple_repeat 1 22 0 2033 260 106 30 chr15 19364586 19365597 -66330157 + L1ME LINE L1 1183 2270 -3991 1788 174 17 0 chr15 19365773 19366066 -66329688 - AluJo SINE Alu -14 298 1 3290 144 39 17 chr15 19366127 19366663 -66329091 - MER44D DNA MER2_type -2 603 1 388 288 76 0 chr15 19366676 19366794 -66328960 - L2 LINE L2 -2 3311 3185 27 62 0 0 chr15 19366985 19367033 -66328721 + AT_rich Low_complexity Low_complexity 1 48 0 2310 102 0 3 chr15 19367455 19367749 -66328005 + AluSg SINE Alu 1 293 -17 2531 48 3 0 chr15 19368081 19368373 -66327381 - AluY SINE Alu -18 293 1 2913 10 0 0 chr15 19368575 19368887 -66326867 - AluYb8 SINE Alu -6 312 1 2221 85 0 39 chr15 19369001 19369306 -66326448 - AluSq SINE Alu -20 293 1 1444 118 90 0 chr15 19369635 19369744 -66326010 - MER30 DNA MER1_type 0 230 132 225 0 0 0 chr15 19369744 19369769 -66325985 + (TG)n Simple_repeat Simple_repeat 2 26 0 1444 118 90 0 chr15 19369769 19369870 -66325884 - MER30 DNA MER1_type -98 132 1 519 207 76 138 chr15 19369951 19370287 -66325467 - MLT1H LTR MaLR -4 545 132 813 187 0 0 chr15 19370287 19370410 -66325344 - FLAM_A SINE Alu -10 123 1 519 207 76 138 chr15 19370410 19370528 -66325226 - MLT1H LTR MaLR -417 132 8 2339 95 6 16 chr15 19370652 19370967 -66324787 - AluSq SINE Alu -1 312 1 554 176 69 29 chr15 19371714 19371843 -66323911 - FLAM_A SINE Alu 0 142 10 416 250 26 7 chr15 19371937 19372110 -66323644 - L1ME3A LINE L1 -189 5975 5801 1382 198 10 54 chr15 19372112 19372426 -66323328 + MLT1D LTR MaLR 1 300 -205 879 189 17 23 chr15 19372428 19372603 -66323151 + FAM SINE Alu 1 174 -11 761 161 244 0 chr15 19372628 19372796 -66322958 + MLT1D LTR MaLR 291 499 -6 781 246 18 26 chr15 19372818 19373046 -66322708 - L1ME3A LINE L1 -380 5790 5565 1688 188 18 0 chr15 19373250 19373532 -66322222 - AluJo SINE Alu -20 292 6 1619 174 10 49 chr15 19373634 19373939 -66321815 - AluJb SINE Alu -19 293 1 375 196 43 0 chr15 19373946 19374038 -66321716 - L1MB3 LINE L1 -1 6182 6087 4453 121 28 40 chr15 19374045 19374693 -66321061 - L1MA4 LINE L1 -286 6014 5371 880 163 0 15 chr15 19374693 19374828 -66320926 - FLAM_C SINE Alu 0 133 1 4453 121 28 40 chr15 19374828 19375238 -66320516 - L1MA4 LINE L1 -929 5371 4958 2338 92 3 0 chr15 19375531 19375824 -66319930 - AluSp SINE Alu -19 294 1 301 262 110 41 chr15 19375827 19375972 -66319782 - MIR SINE MIR -14 248 94 995 202 70 11 chr15 19376089 19376361 -66319393 - AluSp SINE Alu -15 288 1 386 236 122 54 chr15 19376364 19376512 -66319242 - MIR SINE MIR -14 248 91 1554 189 60 0 chr15 19376711 19376992 -66318762 + AluJb SINE Alu 1 298 -14 1945 154 0 7 chr15 19377094 19377393 -66318361 + AluJb SINE Alu 1 297 -15 22 0 0 0 chr15 19377865 19377887 -66317867 + AT_rich Low_complexity Low_complexity 1 22 0 1632 253 75 65 chr15 19378014 19378598 -66317156 - MLT1E LTR MaLR -1 592 3 1845 186 31 0 chr15 19378813 19379163 -66316591 - L1MB3 LINE L1 0 6183 5823 269 41 41 41 chr15 19379192 19379241 -66316513 + AluY SINE Alu 252 300 -1 1762 164 26 7 chr15 19379253 19379557 -66316197 - AluJb SINE Alu -2 310 1 2063 197 16 52 chr15 19379560 19379729 -66316025 - L1MB3 LINE L1 -580 5603 5429 2212 90 3 27 chr15 19379729 19380028 -66315726 - AluSq SINE Alu -20 293 2 2278 98 0 0 chr15 19380037 19380334 -66315420 - AluSx SINE Alu -15 297 1 2063 197 16 52 chr15 19380334 19380637 -66315117 - L1MB3 LINE L1 -762 5421 5109 987 115 8 0 chr15 19380637 19380767 -66314987 - FLAM_A SINE Alu -2 131 1 2063 197 16 52 chr15 19380767 19380803 -66314951 - L1MB3 LINE L1 -1074 5109 5073 180 0 0 0 chr15 19380803 19380823 -66314931 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2063 197 16 52 chr15 19380823 19380893 -66314861 - L1MB3 LINE L1 -1110 5073 5002 2391 84 0 3 chr15 19380893 19381189 -66314565 - AluSx SINE Alu -17 295 1 2063 197 16 52 chr15 19381189 19381404 -66314350 - L1MB3 LINE L1 -1181 5002 4832 248 234 138 56 chr15 19381427 19381531 -66314223 - L1ME4a LINE L1 0 6121 6027 1788 133 10 40 chr15 19381531 19381831 -66313923 - AluSx SINE Alu -21 291 1 248 234 138 56 chr15 19381831 19381957 -66313797 - L1ME4a LINE L1 -94 6027 5872 2226 94 10 3 chr15 19381976 19382275 -66313479 + AluSq SINE Alu 1 301 -12 330 98 0 0 chr15 19382277 19382345 -66313409 - Alu SINE Alu 0 310 243 2137 86 0 47 chr15 19382346 19382516 -66313238 - AluSq SINE Alu -11 302 150 2255 78 10 7 chr15 19382516 19382809 -66312945 - AluSc SINE Alu -15 294 1 2137 86 0 47 chr15 19382809 19382939 -66312815 - AluSq SINE Alu -163 150 16 1654 164 3 21 chr15 19382970 19383257 -66312497 + AluJb SINE Alu 1 282 -30 811 289 66 29 chr15 19383303 19383653 -66312101 - HAL1 LINE L1 0 2507 2145 242 211 0 0 chr15 19383670 19383722 -66312032 - HAL1 LINE L1 -332 2175 2124 1364 153 160 8 chr15 19383727 19383995 -66311759 - AluSg1 SINE Alu 0 309 1 1122 184 0 5 chr15 19384168 19384358 -66311396 - AluJb SINE Alu -121 191 3 378 0 0 0 chr15 19384402 19384444 -66311310 + (TG)n Simple_repeat Simple_repeat 2 43 0 462 242 30 15 chr15 19384444 19384571 -66311183 - HAL1 LINE L1 -2279 228 100 231 224 0 35 chr15 19384575 19384633 -66311121 + L2 LINE L2 3258 3313 0 275 295 13 0 chr15 19384658 19384736 -66311018 - MER117 DNA MER1_type -65 132 54 351 184 257 33 chr15 19385391 19385511 -66310243 - Charlie1 DNA MER1_type -1 2760 2668 2221 92 6 29 chr15 19385511 19385827 -66309927 + AluSg SINE Alu 1 309 -1 351 184 257 33 chr15 19385827 19385858 -66309896 - Charlie1 DNA MER1_type -93 2668 2575 1814 146 3 29 chr15 19385867 19386183 -66309571 - AluJo SINE Alu -4 308 1 663 156 75 96 chr15 19386183 19386328 -66309426 - L1MDa LINE L1 -1106 5434 5292 2108 105 7 11 chr15 19386328 19386644 -66309110 - AluSx SINE Alu 0 315 1 663 156 75 96 chr15 19386644 19386696 -66309058 - L1MDa LINE L1 -1248 5292 5240 * 934 130 14 0 chr15 19386693 19386839 -66308915 + L1MB7 LINE L1 5932 6079 -105 2486 74 0 0 chr15 19386851 19387148 -66308606 + AluY SINE Alu 1 297 -14 1100 153 6 6 chr15 19387171 19387347 -66308407 - L1PA15 LINE L1 0 6165 5990 616 249 72 9 chr15 19387357 19387578 -66308176 - L1MDa LINE L1 -1333 5207 4973 1803 255 79 14 chr15 19387597 19387918 -66307836 - L1MDa LINE L1 -2128 4412 4113 1762 179 3 7 chr15 19387918 19388214 -66307540 - AluJb SINE Alu -13 299 5 1803 255 79 14 chr15 19388214 19388371 -66307383 - L1MDa LINE L1 -2427 4113 3968 2628 118 14 11 chr15 19388371 19388734 -66307020 - THE1B LTR MaLR 0 364 1 1803 255 79 14 chr15 19388734 19389141 -66306613 - L1MDa LINE L1 -2572 3968 3437 39 22 0 0 chr15 19389150 19389196 -66306558 + AT_rich Low_complexity Low_complexity 1 46 0 1485 177 36 18 chr15 19389196 19389473 -66306281 - AluJo SINE Alu -30 282 1 436 187 106 0 chr15 19389637 19389760 -66305994 - L1MDa LINE L1 -3135 3405 3270 2321 106 3 3 chr15 19389786 19390098 -66305656 - AluSx SINE Alu 0 312 1 1984 155 7 0 chr15 19390098 19390401 -66305353 - AluJo SINE Alu -6 306 1 669 235 12 18 chr15 19390401 19390571 -66305183 - MER58A DNA MER1_type -11 213 45 588 218 60 87 chr15 19390586 19390852 -66304902 - L1MDa LINE L1 -3274 3266 3008 1690 212 94 118 chr15 19390868 19391352 -66304402 - MER21B LTR ERV1 -124 739 245 1929 139 20 10 chr15 19391352 19391653 -66304101 + AluJo SINE Alu 1 304 -8 2205 89 0 20 chr15 19391653 19391956 -66303798 + AluSx SINE Alu 1 298 -14 1690 212 94 118 chr15 19391956 19392162 -66303592 - MER21B LTR ERV1 -616 247 65 613 134 28 113 chr15 19392278 19392420 -66303334 - MER21B LTR ERV1 -316 615 406 792 159 89 58 chr15 19392477 19392866 -66302888 - LTR7 LTR ERV1 -7 443 1 345 71 43 100 chr15 19392866 19392936 -66302818 - HERVH LTR ERV1 0 7713 7648 9123 197 46 16 chr15 19393037 19395522 -66300232 - HERVH LTR ERV1 -4908 2805 1 1397 185 115 61 chr15 19395522 19395949 -66299805 - LTR7 LTR ERV1 0 450 1 905 207 88 23 chr15 19395957 19396174 -66299580 - MER21B LTR ERV1 -533 330 100 341 211 10 106 chr15 19396289 19396393 -66299361 - MER21B LTR ERV1 -767 96 3 2985 251 85 64 chr15 19396456 19397311 -66298443 - L1MDa LINE L1 -3538 3002 2166 2371 81 17 0 chr15 19397311 19397608 -66298146 - AluSp SINE Alu -11 302 1 2985 251 85 64 chr15 19397608 19398050 -66297704 - L1MDa LINE L1 -4374 2166 1735 1934 134 0 50 chr15 19398050 19398391 -66297363 - AluSx SINE Alu 0 326 1 2985 251 85 64 chr15 19398391 19398819 -66296935 - L1MDa LINE L1 -4805 1735 1266 2376 91 3 0 chr15 19398819 19399116 -66296638 - AluSg SINE Alu -12 298 1 2985 251 85 64 chr15 19399116 19399388 -66296366 - L1MDa LINE L1 -5274 1266 1001 2211 120 0 3 chr15 19399400 19399708 -66296046 - AluSx SINE Alu -5 307 1 21 0 0 0 chr15 19399766 19399787 -66295967 + AT_rich Low_complexity Low_complexity 1 21 0 233 191 0 0 chr15 19399787 19399834 -66295920 - L1PB1 LINE L1 0 6151 6105 1776 191 0 22 chr15 19400014 19400328 -66295426 + AluJo SINE Alu 1 307 -5 527 277 105 36 chr15 19400571 19400681 -66295073 - L1MC4a LINE L1 -1638 6170 6069 1807 196 0 0 chr15 19400681 19400993 -66294761 - AluJo SINE Alu 0 312 1 527 277 105 36 chr15 19400993 19401016 -66294738 - L1MC4a LINE L1 -1739 6069 6049 979 213 36 41 chr15 19401016 19401237 -66294517 + MER58A DNA MER1_type 5 224 0 527 277 105 36 chr15 19401237 19401434 -66294320 - L1MC4a LINE L1 -1759 6049 5816 828 177 37 0 chr15 19402045 19402209 -66293545 - AluJb SINE Alu -5 307 138 276 173 0 0 chr15 19402309 19402361 -66293393 + Alu SINE Alu 257 308 0 2112 139 0 0 chr15 19402404 19402713 -66293041 - AluSc SINE Alu 0 309 1 190 313 80 54 chr15 19402982 19403094 -66292660 + MER5A DNA MER1_type 71 185 -4 1941 221 36 34 chr15 19403225 19403362 -66292392 - L1M4 LINE L1 -977 5169 5034 2446 73 0 0 chr15 19403362 19403664 -66292090 - AluY SINE Alu -9 302 1 1941 221 36 34 chr15 19403664 19404052 -66291702 - L1M4 LINE L1 -1112 5034 4643 204 175 25 0 chr15 19404054 19404094 -66291660 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1267 194 135 12 chr15 19404099 19404351 -66291403 - AluJo SINE Alu -18 284 2 273 156 31 47 chr15 19404352 19404416 -66291338 - L1M4 LINE L1 -1491 4655 4593 2058 79 12 0 chr15 19404416 19404670 -66291084 - AluSq SINE Alu -56 257 1 354 252 102 0 chr15 19404735 19404862 -66290892 - L1MC4a LINE L1 -1881 5927 5788 2153 155 3 23 chr15 19405077 19405426 -66290328 + MER2 DNA MER2_type 2 343 -1 2523 69 3 0 chr15 19406713 19407016 -66288738 - AluSc SINE Alu -5 304 1 2267 100 6 6 chr15 19408344 19408655 -66287099 - AluY SINE Alu 0 311 1 195 69 0 0 chr15 19408735 19408764 -66286990 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 1619 186 7 11 chr15 19408764 19409043 -66286711 - AluJo SINE Alu -32 280 3 2380 68 0 7 chr15 19409423 19409717 -66286037 - AluY SINE Alu -19 292 1 2267 65 0 71 chr15 19409936 19410258 -66285496 - AluSg SINE Alu -11 299 1 1102 289 179 22 chr15 19410284 19410399 -66285355 + L2 LINE L2 2346 2442 -871 2132 128 0 3 chr15 19410399 19410695 -66285059 - AluSx SINE Alu -17 295 1 1102 289 179 22 chr15 19410695 19411427 -66284327 + L2 LINE L2 2442 3311 -2 198 0 0 0 chr15 19411593 19411615 -66284139 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2089 121 0 0 chr15 19411618 19411900 -66283854 - AluSx SINE Alu -30 282 1 188 83 0 28 chr15 19411962 19411998 -66283756 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 11403 27 3 2 chr15 19411998 19414061 -66281693 - L1PA3 LINE L1 -24 6131 4066 1999 108 49 11 chr15 19414260 19414547 -66281207 - AluSx SINE Alu -10 302 5 2267 87 7 10 chr15 19414994 19415303 -66280451 + AluSq SINE Alu 4 311 -2 24 0 0 0 chr15 19415441 19415465 -66280289 + AT_rich Low_complexity Low_complexity 1 24 0 1813 127 38 4 chr15 19415598 19415865 -66279889 - AluSx SINE Alu -13 299 24 2374 86 0 10 chr15 19416526 19416828 -66278926 + AluSx SINE Alu 1 299 -13 742 307 113 35 chr15 19417237 19417773 -66277981 - L2 LINE L2 -55 3258 2684 2522 62 3 3 chr15 19417799 19418104 -66277650 - AluSp SINE Alu -6 307 3 1068 252 90 59 chr15 19419358 19419504 -66276250 + LTR33A LTR ERVL 33 173 -350 2302 101 0 0 chr15 19419504 19419802 -66275952 + AluSx SINE Alu 1 298 -14 1068 252 90 59 chr15 19419802 19420131 -66275623 + LTR33A LTR ERVL 173 523 0 220 253 0 40 chr15 19420137 19420212 -66275542 + A-rich Low_complexity Low_complexity 5 76 0 1845 121 59 38 chr15 19420247 19420536 -66275218 + AluSg SINE Alu 1 295 -15 552 101 0 0 chr15 19420561 19420630 -66275124 + AluS SINE Alu 1 69 -244 1904 116 0 63 chr15 19420996 19421299 -66274455 + AluSx SINE Alu 1 284 -28 1123 168 24 0 chr15 19421334 19421501 -66274253 + FAM SINE Alu 1 171 -4 426 277 106 67 chr15 19421507 19422252 -66273502 + L1ME4a LINE L1 5042 5752 -369 2527 57 0 3 chr15 19422252 19422552 -66273202 + AluY SINE Alu 1 299 -12 426 277 106 67 chr15 19422552 19422630 -66273124 + L1ME4a LINE L1 5752 5825 -296 2100 124 3 0 chr15 19423221 19423512 -66272242 - AluSx SINE Alu -20 292 1 9333 28 3 237 chr15 19424161 19425961 -66269793 + SVA Other Other 1 1378 -8 21 36 0 0 chr15 19426852 19426880 -66268874 + AT_rich Low_complexity Low_complexity 1 28 0 1830 142 0 0 chr15 19426890 19427158 -66268596 - AluSx SINE Alu -18 294 27 24 32 0 0 chr15 19427766 19427797 -66267957 + AT_rich Low_complexity Low_complexity 1 31 0 1705 119 4 0 chr15 19427859 19428086 -66267668 + AluSx SINE Alu 25 252 -60 268 215 47 9 chr15 19428279 19428386 -66267368 + (TA)n Simple_repeat Simple_repeat 1 111 0 898 145 0 43 chr15 19428761 19428899 -66266855 - FLAM_C SINE Alu 0 133 2 180 0 0 0 chr15 19428909 19428929 -66266825 + (TTA)n Simple_repeat Simple_repeat 3 22 0 6904 66 7 3 chr15 19428930 19429986 -66265768 - L1PA7 LINE L1 -36 6118 5060 5892 86 8 0 chr15 19429985 19430787 -66264967 + L1PA7 LINE L1 4252 5059 -1087 * 2089 128 27 0 chr15 19431094 19431390 -66264364 - AluSq SINE Alu -9 304 1 187 347 69 14 chr15 19431676 19431748 -66264006 - L3b LINE CR1 -24 1559 1484 192 310 97 18 chr15 19431754 19431867 -66263887 + MIR SINE MIR 61 182 -80 364 222 0 22 chr15 19432115 19432205 -66263549 - L1ME2 LINE L1 -1 6163 6076 5893 148 23 22 chr15 19432223 19432733 -66263021 - L1MC1 LINE L1 0 6333 5820 2248 121 0 6 chr15 19432733 19433046 -66262708 - AluSx SINE Alu -1 311 1 5893 148 23 22 chr15 19433046 19433545 -66262209 - L1MC1 LINE L1 -513 5820 5323 911 159 0 0 chr15 19433546 19433672 -66262082 - FLAM_C SINE Alu -6 127 2 1498 212 10 10 chr15 19433683 19433971 -66261783 - AluSx SINE Alu -13 289 2 1988 139 3 13 chr15 19434328 19434631 -66261123 - AluSx SINE Alu -12 300 1 25 0 0 0 chr15 19434865 19434890 -66260864 + AT_rich Low_complexity Low_complexity 1 25 0 225 0 0 0 chr15 19436066 19436091 -66259663 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1616 128 47 12 chr15 19436094 19436352 -66259402 - AluJo SINE Alu -30 282 16 594 186 17 17 chr15 19436362 19436480 -66259274 - MLT1F LTR MaLR -50 492 375 324 0 0 0 chr15 19439087 19439123 -66256631 + (TG)n Simple_repeat Simple_repeat 2 37 0 1653 60 5 41 chr15 19439334 19439552 -66256202 + AluY SINE Alu 1 210 -101 755 224 107 15 chr15 19439586 19439849 -66255905 - L1MC5 LINE L1 -30 7931 7645 2424 192 73 86 chr15 19439925 19440811 -66254943 - L1MC5 LINE L1 -264 7697 6823 23 0 0 0 chr15 19440879 19440902 -66254852 + AT_rich Low_complexity Low_complexity 1 23 0 666 249 166 116 chr15 19441391 19441684 -66254070 - MLT1H1 LTR MaLR 0 555 259 2393 91 3 0 chr15 19441684 19441991 -66253763 - AluSx SINE Alu -4 308 1 666 249 166 116 chr15 19441991 19442264 -66253490 - MLT1H1 LTR MaLR -296 259 1 2330 85 7 0 chr15 19442617 19442910 -66252844 - AluSg SINE Alu -15 295 1 2301 109 0 3 chr15 19442999 19443312 -66252442 + AluSx SINE Alu 1 312 0 2157 121 0 7 chr15 19444161 19444466 -66251288 - AluSx SINE Alu -9 303 1 26 88 0 0 chr15 19444720 19444788 -66250966 + AT_rich Low_complexity Low_complexity 1 68 0 2316 108 0 0 chr15 19446739 19447035 -66248719 - AluSc SINE Alu -13 296 1 1990 144 13 3 chr15 19447415 19447721 -66248033 - AluSx SINE Alu -3 309 1 1933 150 0 3 chr15 19448227 19448520 -66247234 + AluSx SINE Alu 1 292 -20 1750 146 7 21 chr15 19448714 19449041 -66246713 - AluJo SINE Alu 0 323 1 1611 127 45 15 chr15 19449078 19449345 -66246409 - L1MC1 LINE L1 0 6333 6059 479 114 29 0 chr15 19449353 19449423 -66246331 - Tigger5 DNA MER2_type -1 2322 2251 320 152 0 0 chr15 19449400 19449446 -66246308 - Tigger5 DNA MER2_type -2276 47 2 * 3502 174 111 1 chr15 19449451 19450199 -66245555 - L1MC3 LINE L1 -743 5683 5501 3351 193 66 36 chr15 19450195 19450340 -66245414 - L1MC3 LINE L1 -2953 3473 3334 * 2665 42 0 6 chr15 19450340 19450653 -66245101 - AluY SINE Alu 0 311 1 3351 193 66 36 chr15 19450653 19451313 -66244441 - L1MC3 LINE L1 -3092 3334 2696 626 233 25 0 chr15 19451313 19451458 -66244296 - FLAM_A SINE Alu 0 148 1 3351 193 66 36 chr15 19451458 19451766 -66243988 - L1MC3 LINE L1 -3730 2696 2399 1653 212 0 6 chr15 19451766 19452077 -66243677 - AluJo SINE Alu -3 309 1 3351 193 66 36 chr15 19452077 19452125 -66243629 - L1MC3 LINE L1 -4027 2399 2354 1565 167 25 65 chr15 19452125 19452449 -66243305 - AluSx SINE Alu -1 311 1 3351 193 66 36 chr15 19452449 19453012 -66242742 - L1MC3 LINE L1 -4072 2354 1600 2128 126 3 0 chr15 19453012 19453313 -66242441 - AluSp SINE Alu -11 302 1 3351 193 66 36 chr15 19453313 19453356 -66242398 - L1MC3 LINE L1 -4826 1600 1560 * 10945 206 16 25 chr15 19453341 19454710 -66241044 - L1 LINE L1 -812 5334 3954 2203 110 3 0 chr15 19454710 19455009 -66240745 - AluSp SINE Alu -13 300 1 10945 206 16 25 chr15 19455009 19456657 -66239097 - L1 LINE L1 -2192 3954 2334 1912 95 60 73 chr15 19456667 19456982 -66238772 + AluSq SINE Alu 1 311 -2 323 157 129 0 chr15 19456985 19457055 -66238699 - AluJo SINE Alu -160 142 64 507 182 11 0 chr15 19457062 19457150 -66238604 - AluJo SINE Alu -223 89 1 180 0 0 0 chr15 19457155 19457175 -66238579 + (TTG)n Simple_repeat Simple_repeat 2 21 0 263 78 0 109 chr15 19457175 19457239 -66238515 - L1MCa LINE L1 -4911 1515 1459 6020 166 43 78 chr15 19457245 19458204 -66237550 - L1MCa LINE L1 -4940 1486 600 1861 158 0 23 chr15 19458204 19458507 -66237247 + AluJb SINE Alu 1 296 -16 6020 166 43 78 chr15 19458507 19459085 -66236669 - L1MCa LINE L1 -5826 600 3 348 197 89 94 chr15 19459077 19459290 -66236464 - L1MC5 LINE L1 -35 7926 7715 * 234 0 0 0 chr15 19459507 19459533 -66236221 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1811 141 50 0 chr15 19459538 19459815 -66235939 - AluSx SINE Alu -21 291 1 1873 177 0 13 chr15 19460077 19460382 -66235372 - AluJo SINE Alu -11 301 1 980 118 56 36 chr15 19460385 19460538 -66235216 - L1MC2 LINE L1 -17 6327 6168 2135 131 3 0 chr15 19460538 19460835 -66234919 - AluSx SINE Alu -13 299 2 980 118 56 36 chr15 19460835 19460876 -66234878 - L1MC2 LINE L1 -176 6168 6129 405 180 79 34 chr15 19460904 19460993 -66234761 - FLAM_C SINE Alu -16 127 35 594 269 40 37 chr15 19461038 19461387 -66234367 - L1MC5 LINE L1 -297 7664 7315 902 231 36 100 chr15 19461412 19461634 -66234120 - L1MC5 LINE L1 -750 7211 6976 2202 54 18 4 chr15 19461634 19461949 -66233805 + AluY SINE Alu 1 319 0 902 231 36 100 chr15 19461949 19462306 -66233448 - L1MC5 LINE L1 -985 6976 6668 869 130 0 8 chr15 19462411 19462542 -66233212 + AluSg/x SINE Alu 172 301 -9 942 179 53 39 chr15 19463028 19463235 -66232519 - MER6B DNA MER2_type 0 210 1 1830 179 0 10 chr15 19463377 19463685 -66232069 + AluJo SINE Alu 1 305 -7 1088 127 0 0 chr15 19463708 19463866 -66231888 - AluSg/x SINE Alu -3 309 152 24 0 0 0 chr15 19464112 19464136 -66231618 + AT_rich Low_complexity Low_complexity 1 24 0 2201 122 3 0 chr15 19465247 19465543 -66230211 + AluSx SINE Alu 1 297 -15 305 237 11 54 chr15 19465906 19465999 -66229755 + L1MC4 LINE L1 6614 6702 -1340 191 316 59 46 chr15 19466125 19466277 -66229477 + L2 LINE L2 2682 2835 -479 2307 78 0 69 chr15 19466339 19466672 -66229082 - AluY SINE Alu -1 310 1 23 0 0 0 chr15 19466958 19466981 -66228773 + AT_rich Low_complexity Low_complexity 1 23 0 458 358 22 19 chr15 19467051 19467367 -66228387 + L1ME LINE L1 21 337 -6203 1578 233 86 10 chr15 19467905 19468534 -66227220 + L1ME LINE L1 916 1548 -4992 1800 193 57 39 chr15 19468543 19468826 -66226928 + L1ME LINE L1 4533 4810 -1730 2398 84 3 0 chr15 19468826 19469122 -66226632 + AluSp SINE Alu 1 297 -16 1800 193 57 39 chr15 19469122 19469403 -66226351 + L1ME LINE L1 4810 5107 -1433 447 151 173 7 chr15 19469421 19469560 -66226194 + L1MA8 LINE L1 6126 6287 -4 812 234 34 24 chr15 19469561 19469770 -66225984 + AluJo SINE Alu 97 307 -5 1972 215 66 11 chr15 19469775 19470480 -66225274 + L1ME LINE L1 5122 5860 -700 1706 207 127 71 chr15 19470480 19471046 -66224708 - MER21B LTR ERV1 -261 602 5 1627 151 16 69 chr15 19471062 19471134 -66224620 - MER2 DNA MER2_type 0 345 271 2073 123 36 0 chr15 19471134 19471435 -66224319 + AluSx SINE Alu 1 312 0 1627 151 16 69 chr15 19471435 19471580 -66224174 - MER2 DNA MER2_type -74 271 120 1748 171 67 6 chr15 19471580 19471907 -66223847 + MER7A DNA MER2_type 2 346 0 1627 151 16 69 chr15 19471907 19471953 -66223801 - MER2 DNA MER2_type -225 120 73 1755 108 115 11 chr15 19471953 19472231 -66223523 - AluSg1 SINE Alu -1 308 2 1627 151 16 69 chr15 19472231 19472329 -66223425 - MER2 DNA MER2_type -272 73 1 313 265 162 0 chr15 19472609 19472726 -66223028 + L2 LINE L2 3147 3282 -31 517 274 240 0 chr15 19472828 19473007 -66222747 + MIR SINE MIR 9 230 -32 1827 160 18 0 chr15 19473054 19473335 -66222419 - AluJb SINE Alu -26 286 1 1250 187 90 162 chr15 19473447 19473833 -66221921 - LTR8A LTR ERV1 0 727 419 2363 95 0 0 chr15 19473833 19474137 -66221617 - AluSg SINE Alu -6 304 1 1250 187 90 162 chr15 19474137 19474498 -66221256 - LTR8A LTR ERV1 -308 419 34 821 146 8 8 chr15 19474880 19475010 -66220744 - FLAM_A SINE Alu -3 130 1 839 141 15 7 chr15 19475420 19475555 -66220199 + AluJo SINE Alu 1 136 -176 2022 133 0 13 chr15 19476105 19476405 -66219349 + AluJb SINE Alu 1 296 -16 204 313 0 0 chr15 19476531 19476579 -66219175 + MER5B DNA MER1_type 130 177 -1 207 236 18 0 chr15 19476929 19476984 -66218770 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 959 219 31 46 chr15 19477589 19477849 -66217905 - MSTD LTR MaLR 0 396 141 5198 129 1 2 chr15 19477853 19478679 -66217075 + L1PA15 LINE L1 5341 6165 0 2088 137 0 0 chr15 19478790 19479082 -66216672 - AluSx SINE Alu -20 292 1 303 28 0 0 chr15 19479226 19479262 -66216492 + (CA)n Simple_repeat Simple_repeat 2 37 0 2164 96 3 0 chr15 19479384 19479689 -66216065 - AluSx SINE Alu 0 307 2 2244 121 3 3 chr15 19479934 19480240 -66215514 - AluSx SINE Alu -6 306 1 2218 104 7 0 chr15 19480240 19480538 -66215216 - AluSx SINE Alu -12 300 1 304 300 9 27 chr15 19480636 19480746 -66215008 - MIR SINE MIR -61 201 94 1242 202 112 78 chr15 19481664 19482420 -66213334 - L1MC5 LINE L1 -36 7925 7238 1185 222 44 103 chr15 19482435 19482727 -66213027 - L1MC5 LINE L1 -740 7221 6913 1589 131 0 0 chr15 19482727 19482948 -66212806 - AluSg/x SINE Alu -18 292 72 1185 222 44 103 chr15 19482948 19483350 -66212404 - L1MC5 LINE L1 -1048 6913 6558 1680 167 31 24 chr15 19483419 19483573 -66212181 - AluJb SINE Alu -17 295 144 261 0 0 0 chr15 19483573 19483602 -66212152 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2167 91 0 14 chr15 19483602 19483888 -66211866 - AluSc SINE Alu -27 282 1 1680 167 31 24 chr15 19483888 19484025 -66211729 - AluJb SINE Alu -167 145 1 448 171 15 141 chr15 19484035 19484234 -66211520 + L1MC5 LINE L1 7730 7903 -58 198 0 0 0 chr15 19484346 19484368 -66211386 + (T)n Simple_repeat Simple_repeat 1 22 0 1389 96 5 5 chr15 19484409 19484617 -66211137 - L1PA14 LINE L1 -10 6151 5944 425 190 13 0 chr15 19484705 19484784 -66210970 - Tigger7 DNA MER2_type 0 2487 2408 1304 176 20 8 chr15 19484788 19485038 -66210716 - Tigger7 DNA MER2_type -2223 264 12 26 82 0 0 chr15 19485235 19485296 -66210458 + AT_rich Low_complexity Low_complexity 1 61 0 358 329 150 0 chr15 19485952 19486119 -66209635 + MIR SINE MIR 20 211 -51 237 344 0 0 chr15 19486190 19486254 -66209500 - MIR SINE MIR 0 262 199 663 163 82 22 chr15 19486255 19486390 -66209364 + FLAM_C SINE Alu 1 143 0 291 184 115 0 chr15 19486404 19486491 -66209263 - MIR SINE MIR -70 192 96 279 79 0 0 chr15 19486563 19486601 -66209153 + (CA)n Simple_repeat Simple_repeat 1 38 0 2240 96 0 0 chr15 19486601 19486892 -66208862 - AluY SINE Alu -20 291 1 50 42 0 0 chr15 19486899 19486970 -66208784 + AT_rich Low_complexity Low_complexity 1 71 0 2292 87 3 7 chr15 19487129 19487427 -66208327 + AluSq SINE Alu 1 297 -16 959 173 6 0 chr15 19487921 19488083 -66207671 + FAM SINE Alu 2 164 -11 2218 105 0 30 chr15 19488879 19489184 -66206570 - AluSg SINE Alu -14 296 1 48 0 0 0 chr15 19490106 19490154 -66205600 + AT_rich Low_complexity Low_complexity 1 48 0 680 195 0 0 chr15 19490523 19490651 -66205103 + MER3 DNA MER1_type 1 128 -81 1940 126 0 14 chr15 19490651 19490962 -66204792 - AluSx SINE Alu 0 310 4 739 221 21 14 chr15 19491283 19491428 -66204326 - FRAM SINE Alu -30 146 1 185 0 40 0 chr15 19491441 19491466 -66204288 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1124 185 19 0 chr15 19491514 19491730 -66204024 - L1PA13 LINE L1 -6 6157 5938 745 207 72 15 chr15 19491871 19492133 -66203621 - L1MD3 LINE L1 -1 7983 6091 2303 146 17 15 chr15 19492135 19492544 -66203210 + MSTB1 LTR MaLR 1 410 -22 1114 81 81 11 chr15 19492544 19492730 -66203024 + MER30 DNA MER1_type 1 199 -31 1090 187 25 22 chr15 19494116 19494403 -66201351 + L1ME1 LINE L1 5149 5426 -740 2435 84 3 3 chr15 19494403 19494713 -66201041 + AluY SINE Alu 1 310 -1 1090 187 25 22 chr15 19494713 19494793 -66200961 + L1ME1 LINE L1 5426 5504 -662 913 156 75 10 chr15 19494790 19494989 -66200765 + L1ME1 LINE L1 5949 6160 -6 * 1301 232 25 71 chr15 19495043 19495334 -66200420 - L1MC4a LINE L1 -1707 6101 5847 1276 168 6 123 chr15 19495334 19495674 -66200080 - AluJb SINE Alu -12 300 1 1301 232 25 71 chr15 19495674 19495942 -66199812 - L1MC4a LINE L1 -1961 5847 5568 234 57 0 0 chr15 19497029 19497064 -66198690 - Alu SINE Alu -5 296 262 1155 64 7 0 chr15 19497065 19497205 -66198549 - AluSc SINE Alu -168 141 1 238 136 0 0 chr15 19497232 19497276 -66198478 - L1ME4a LINE L1 -4 6117 6074 208 135 0 0 chr15 19497432 19497469 -66198285 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 575 258 9 26 chr15 19497489 19497932 -66197822 + CT-rich Low_complexity Low_complexity 1 435 0 344 332 84 0 chr15 19498033 19498232 -66197522 + L1M4 LINE L1 3073 3305 -2841 2403 66 0 3 chr15 19498374 19498677 -66197077 - AluY SINE Alu -9 302 1 304 266 57 32 chr15 19498699 19498823 -66196931 + MIR SINE MIR 47 173 -89 1013 164 0 13 chr15 19498871 19499030 -66196724 + FRAM SINE Alu 1 153 -23 491 257 52 64 chr15 19499048 19499297 -66196457 - L2 LINE L2 -130 3183 2938 249 237 17 17 chr15 19499368 19499427 -66196327 - L2 LINE L2 -497 2817 2759 1906 116 4 4 chr15 19500144 19500168 -66195586 - AluSg SINE Alu 0 310 287 186 43 0 0 chr15 19500168 19500191 -66195563 + (TA)n Simple_repeat Simple_repeat 2 24 0 1906 116 4 4 chr15 19500191 19500442 -66195312 - AluSg SINE Alu -22 288 35 1886 136 0 0 chr15 19500737 19500987 -66194767 + AluSg SINE Alu 38 287 -23 438 114 0 0 chr15 19500987 19501066 -66194688 + (TA)n Simple_repeat Simple_repeat 2 80 0 512 133 8 0 chr15 19501136 19501256 -66194498 + (TA)n Simple_repeat Simple_repeat 1 121 0 1703 199 7 0 chr15 19502532 19502818 -66192936 - AluJo SINE Alu -24 288 1 1553 113 0 5 chr15 19502879 19503100 -66192654 + AluSq SINE Alu 87 306 -7 336 280 72 88 chr15 19503156 19503245 -66192509 - HAL1 LINE L1 -939 1568 1479 1972 124 0 42 chr15 19503245 19503552 -66192202 - AluSx SINE Alu -18 294 1 336 280 72 88 chr15 19503552 19503572 -66192182 - HAL1 LINE L1 -1028 1479 1460 1900 175 7 0 chr15 19503572 19503875 -66191879 - AluJb SINE Alu -7 305 1 336 280 72 88 chr15 19503875 19503957 -66191797 - HAL1 LINE L1 -1047 1460 1379 1050 286 85 66 chr15 19503968 19504952 -66190802 - L1MEd LINE L1 -4865 1254 254 26 50 0 0 chr15 19505176 19505216 -66190538 + AT_rich Low_complexity Low_complexity 1 40 0 1842 171 0 11 chr15 19505825 19506112 -66189642 + AluJb SINE Alu 5 288 -24 21 0 0 0 chr15 19506113 19506134 -66189620 + AT_rich Low_complexity Low_complexity 1 21 0 1341 203 21 28 chr15 19508258 19508548 -66187206 - AluJb SINE Alu -24 288 1 1471 175 16 91 chr15 19509378 19509711 -66186043 + AluJb SINE Alu 1 310 0 198 313 0 0 chr15 19510129 19510177 -66185577 - L2 LINE L2 -246 3067 3020 1579 67 10 0 chr15 19510180 19510375 -66185379 + MER30 DNA MER1_type 1 197 -33 664 318 111 46 chr15 19510378 19510791 -66184963 - L2 LINE L2 -234 3038 2605 2176 122 3 3 chr15 19510830 19511133 -66184621 - AluSx SINE Alu -9 303 1 442 251 55 18 chr15 19511293 19511456 -66184298 - MLT1J2 LTR MaLR -239 211 43 199 302 205 39 chr15 19511523 19511728 -66184026 + L2 LINE L2 2819 3057 -215 193 330 100 0 chr15 19511792 19511892 -66183862 + L2 LINE L2 3171 3280 -33 316 228 89 20 chr15 19511902 19512003 -66183751 + L2 LINE L2 3158 3265 -48 279 259 170 12 chr15 19512520 19512657 -66183097 + MIR SINE MIR 16 183 -61 2220 108 14 0 chr15 19512657 19512952 -66182802 - AluSq SINE Alu -14 299 1 23 33 0 0 chr15 19512974 19513004 -66182750 + AT_rich Low_complexity Low_complexity 1 30 0 1750 152 64 0 chr15 19513083 19513366 -66182388 - AluSx SINE Alu -11 301 1 2299 132 11 17 chr15 19513690 19513955 -66181799 + MER7A DNA MER2_type 1 263 -2775 3594 60 25 9 chr15 19513955 19514392 -66181362 - MLT2A1 LTR ERVL 0 444 1 2299 132 11 17 chr15 19514392 19514475 -66181279 + MER7A DNA MER2_type 263 345 -1 207 0 0 0 chr15 19514521 19514544 -66181210 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 254 262 97 10 chr15 19516880 19516983 -66178771 - L1ME4a LINE L1 -2 6119 6008 1339 166 0 9 chr15 19516992 19517215 -66178539 - AluJb SINE Alu -6 306 86 2212 111 3 10 chr15 19517379 19517685 -66178069 + AluSx SINE Alu 1 304 -8 1099 159 96 23 chr15 19517691 19517735 -66178019 - MER46A DNA MER2_type -2495 236 197 2248 93 0 3 chr15 19517735 19518025 -66177729 - AluY SINE Alu -20 291 3 1099 159 96 23 chr15 19518025 19518200 -66177554 - MER46A DNA MER2_type -2534 197 1 2340 104 0 0 chr15 19518931 19519238 -66176516 + AluSx SINE Alu 1 307 -5 214 234 31 16 chr15 19519284 19519348 -66176406 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 754 223 82 98 chr15 19520472 19520705 -66175049 + L2 LINE L2 1974 2202 -1112 2033 122 14 3 chr15 19520705 19520993 -66174761 - AluSx SINE Alu -21 291 1 754 223 82 98 chr15 19520993 19521064 -66174690 + L2 LINE L2 2202 2273 -1041 243 309 155 72 chr15 19521118 19521251 -66174503 + L2 LINE L2 2551 2704 -610 1616 123 0 0 chr15 19521251 19521471 -66174283 - AluSg/x SINE Alu -9 301 82 243 309 155 72 chr15 19521471 19521518 -66174236 + L2 LINE L2 2704 2746 -568 330 157 29 5 chr15 19521519 19521607 -66174147 + L1MC5 LINE L1 6743 6839 -946 259 219 288 0 chr15 19522048 19522121 -66173633 - L1MC4 LINE L1 -152 7890 7797 183 189 0 0 chr15 19522967 19523020 -66172734 + T-rich Low_complexity Low_complexity 1 53 0 756 162 9 0 chr15 19523069 19523180 -66172574 + FRAM SINE Alu 35 146 -30 2033 114 45 0 chr15 19523257 19523547 -66172207 - AluSq SINE Alu -10 303 1 1034 185 49 0 chr15 19523550 19523712 -66172042 - FAM SINE Alu -5 170 1 473 294 82 6 chr15 19523820 19523990 -66171764 + MER5A DNA MER1_type 7 189 0 242 305 136 40 chr15 19523996 19524120 -66171634 - MIR3 SINE MIR -53 155 20 23 0 0 0 chr15 19524525 19524548 -66171206 + AT_rich Low_complexity Low_complexity 1 23 0 717 186 0 125 chr15 19524714 19524780 -66170974 - LTR41 LTR ERVL -7 766 693 1193 121 24 48 chr15 19524780 19524958 -66170796 - L1MA4 LINE L1 -8 6292 6118 2082 114 17 10 chr15 19524958 19525255 -66170499 - AluSx SINE Alu -13 299 1 1193 121 24 48 chr15 19525255 19525282 -66170472 - L1MA4 LINE L1 -182 6118 6092 717 186 0 125 chr15 19525282 19525463 -66170291 - LTR41 LTR ERVL -80 693 550 301 274 33 104 chr15 19525548 19525760 -66169994 + HAL1b LINE L1 2 198 -1150 2007 128 0 45 chr15 19525797 19525931 -66169823 + AluSg SINE Alu 1 139 -171 2303 85 10 13 chr15 19525931 19526238 -66169516 + AluY SINE Alu 1 306 -5 2007 128 0 45 chr15 19526238 19526415 -66169339 + AluSg SINE Alu 139 298 -12 2032 153 0 3 chr15 19526529 19526837 -66168917 + AluJb SINE Alu 1 307 -5 1054 185 23 23 chr15 19526910 19527126 -66168628 - L1 LINE L1 -1083 5063 4848 587 208 0 0 chr15 19527133 19527234 -66168520 + L1MA8 LINE L1 5679 5779 -533 207 0 0 0 chr15 19527237 19527260 -66168494 + (TG)n Simple_repeat Simple_repeat 2 24 0 751 189 43 188 chr15 19527301 19527354 -66168400 + L1MA8 LINE L1 5755 5814 -477 2125 139 0 0 chr15 19527354 19527663 -66168091 - AluSx SINE Alu -3 309 1 751 189 43 188 chr15 19527663 19528206 -66167548 + L1MA8 LINE L1 5814 6268 -23 767 298 103 39 chr15 19528225 19528948 -66166806 + L1M4 LINE L1 2113 2901 -3245 2107 163 9 11 chr15 19528948 19529297 -66166457 + MER7A DNA MER2_type 1 346 0 767 298 103 39 chr15 19529297 19529423 -66166331 + L1M4 LINE L1 2901 3017 -3129 * 819 225 58 0 chr15 19529415 19529606 -66166148 - L1MC4a LINE L1 -459 7349 7148 229 128 136 32 chr15 19529608 19529684 -66166070 + MER58 DNA MER1_type 131 2420 0 765 244 85 10 chr15 19529826 19530027 -66165727 - MER58A DNA MER1_type 0 224 9 192 77 0 0 chr15 19530968 19530994 -66164760 + (T)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr15 19531350 19531374 -66164380 + AT_rich Low_complexity Low_complexity 1 24 0 2279 112 0 3 chr15 19531694 19531999 -66163755 + AluSx SINE Alu 1 304 -8 1557 193 28 8 chr15 19532087 19532492 -66163262 + MER65C LTR ERV1 1 461 0 2379 87 0 0 chr15 19532538 19532836 -66162918 + AluSq SINE Alu 2 299 -14 2374 112 0 0 chr15 19533023 19533335 -66162419 - AluSx SINE Alu 0 312 1 1851 153 41 10 chr15 19533684 19534011 -66161743 - MLT1A1 LTR MaLR -29 403 1 2277 104 0 0 chr15 19534743 19535031 -66160723 + AluSx SINE Alu 1 288 -24 227 129 0 0 chr15 19535292 19535323 -66160431 - LTR16A1 LTR ERVL 0 457 427 1291 248 15 18 chr15 19535324 19535720 -66160034 + L1M4 LINE L1 2738 3132 -3014 283 214 101 0 chr15 19535729 19535818 -66159936 - L1MEc LINE L1 -3166 2963 2866 * 336 275 85 48 chr15 19535815 19536131 -66159623 - L1MEc LINE L1 -3684 2445 2118 2112 124 7 0 chr15 19536141 19536431 -66159323 - AluSx SINE Alu -20 292 1 364 283 45 70 chr15 19536489 19536733 -66159021 - L1MEc LINE L1 -4226 2084 1847 1611 134 4 41 chr15 19536784 19537052 -66158702 + AluJb SINE Alu 3 260 -52 274 321 25 0 chr15 19537063 19537144 -66158610 + C-rich Low_complexity Low_complexity 1 83 0 255 188 0 52 chr15 19537144 19537240 -66158514 + CT-rich Low_complexity Low_complexity 5 95 0 418 226 0 0 chr15 19537482 19537566 -66158188 + AluS SINE Alu 220 303 -7 2058 127 10 7 chr15 19537586 19537886 -66157868 - AluSx SINE Alu -11 301 1 485 278 74 96 chr15 19537957 19538147 -66157607 - L1MEc LINE L1 -4480 1649 1456 2105 131 6 16 chr15 19538147 19538461 -66157293 - AluSx SINE Alu -1 311 1 485 278 74 96 chr15 19538461 19538888 -66156866 - L1MEc LINE L1 -4673 1456 1021 2251 112 0 13 chr15 19538888 19539201 -66156553 - AluSg SINE Alu -1 309 1 485 278 74 96 chr15 19539201 19539692 -66156062 - L1MEc LINE L1 -5108 1021 563 192 152 0 0 chr15 19540597 19540630 -66155124 + (TTA)n Simple_repeat Simple_repeat 2 34 0 355 235 51 51 chr15 19542948 19543046 -66152708 - MER5A DNA MER1_type -46 143 46 685 354 28 0 chr15 19543565 19543746 -66152008 + MER91A DNA MER1_type 3 188 -8 218 263 0 40 chr15 19543760 19543836 -66151918 + CT-rich Low_complexity Low_complexity 1 73 0 279 0 0 0 chr15 19544114 19544145 -66151609 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1223 99 0 12 chr15 19544147 19544309 -66151445 - AluSg/x SINE Alu -29 283 124 816 206 11 22 chr15 19544364 19544544 -66151210 - AluJ SINE Alu -12 300 123 225 0 0 0 chr15 19544640 19544665 -66151089 + (TTG)n Simple_repeat Simple_repeat 2 26 0 266 111 0 0 chr15 19544665 19544701 -66151053 - AluJ SINE Alu -181 121 86 881 273 5 5 chr15 19544701 19544921 -66150833 - AluJo SINE Alu -92 220 1 1745 202 58 106 chr15 19545002 19545557 -66150197 - MLT1F LTR MaLR -12 530 3 2313 84 3 10 chr15 19546312 19546621 -66149133 + AluSg1 SINE Alu 1 307 -2 181 327 64 36 chr15 19546994 19547104 -66148650 + L3 LINE CR1 1386 1498 -79 275 375 62 0 chr15 19547139 19547251 -66148503 - L2 LINE L2 -16 3256 3138 40351 73 10 6 chr15 19547327 19553447 -66142307 - L1PA6 LINE L1 -2 6152 11 4810 98 30 43 chr15 19553893 19554072 -66141682 - L1MA5A LINE L1 -9 6930 6750 2273 122 3 0 chr15 19554072 19554383 -66141371 + AluSx SINE Alu 1 312 0 813 73 0 0 chr15 19554392 19554501 -66141253 + (TA)n Simple_repeat Simple_repeat 2 110 0 4810 98 30 43 chr15 19554501 19554836 -66140918 - L1MA5A LINE L1 -197 6742 6417 2059 120 3 3 chr15 19554836 19555150 -66140604 - AluSx SINE Alu 0 312 1 4810 98 30 43 chr15 19555150 19555382 -66140372 - L1MA5A LINE L1 -522 6417 6183 2494 80 49 20 chr15 19555382 19555732 -66140022 - THE1B LTR MaLR 0 364 5 4423 127 27 114 chr15 19555732 19556994 -66138760 - L1MA5A LINE L1 -743 6045 5045 6955 172 212 20 chr15 19557027 19557171 -66138583 - L1MA5A LINE L1 -4747 2042 1927 2421 100 3 0 chr15 19557171 19557482 -66138272 - AluSx SINE Alu 0 312 1 6955 172 212 20 chr15 19557482 19558907 -66136847 - L1MA5A LINE L1 -4862 1927 172 2347 95 7 0 chr15 19558907 19559212 -66136542 - AluSp SINE Alu -6 307 1 1742 136 36 52 chr15 19560177 19560486 -66135268 + AluJo SINE Alu 3 306 -6 846 168 8 0 chr15 19560702 19560833 -66134921 - FLAM_A SINE Alu 0 133 2 2346 95 3 0 chr15 19560976 19561282 -66134472 - AluSq SINE Alu -6 307 1 2023 129 0 29 chr15 19561361 19561672 -66134082 - AluSx SINE Alu -10 302 1 907 182 15 49 chr15 19562551 19562754 -66133000 - AluSp SINE Alu -10 303 108 288 234 0 0 chr15 19562952 19563029 -66132725 + A-rich Low_complexity Low_complexity 1 77 0 844 163 0 7 chr15 19563396 19563555 -66132199 + AluSg/x SINE Alu 152 309 0 1848 157 17 3 chr15 19563559 19563859 -66131895 + AluJb SINE Alu 1 304 -8 1153 311 80 9 chr15 19564026 19564489 -66131265 - LTR33 LTR ERVL -8 513 18 657 71 0 61 chr15 19566140 19566177 -66129577 - L1MB3 LINE L1 -8 6175 6137 1900 140 0 23 chr15 19566177 19566485 -66129269 - AluSx SINE Alu -11 301 1 657 71 0 61 chr15 19566485 19566545 -66129209 - L1MB3 LINE L1 -46 6137 6084 9870 126 105 99 chr15 19566545 19567833 -66127921 - L1M4c LINE L1 -4206 2178 686 1182 151 0 11 chr15 19567833 19568019 -66127735 - AluJo SINE Alu -9 303 120 9870 126 105 99 chr15 19568019 19568693 -66127061 - L1M4c LINE L1 -5698 686 18 187 336 100 18 chr15 19568738 19568848 -66126906 + MIR SINE MIR 118 236 -26 1171 159 48 5 chr15 19569227 19569416 -66126338 + AluJb SINE Alu 1 197 -115 2164 115 3 3 chr15 19569466 19569761 -66125993 - AluSx SINE Alu -13 299 5 1753 96 74 33 chr15 19570272 19570542 -66125212 + MER1B DNA MER1_type 59 339 0 1861 154 7 20 chr15 19570671 19570976 -66124778 + AluJb SINE Alu 1 301 -11 300 242 242 0 chr15 19571463 19571554 -66124200 - MIR SINE MIR -85 177 65 22 0 0 0 chr15 19571645 19571667 -66124087 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr15 19573932 19573961 -66121793 + AT_rich Low_complexity Low_complexity 1 29 0 2390 80 0 10 chr15 19577085 19577399 -66118355 + AluY SINE Alu 1 311 0 24 32 0 0 chr15 19577917 19577948 -66117806 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr15 19578901 19578933 -66116821 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr15 19579184 19579206 -66116548 + AT_rich Low_complexity Low_complexity 1 22 0 526 76 0 0 chr15 19579636 19579702 -66116052 + Alu SINE Alu 235 300 -12 1951 123 20 10 chr15 19579712 19580013 -66115741 + AluSq SINE Alu 1 304 -9 2038 111 35 3 chr15 19580066 19580354 -66115400 + AluSx SINE Alu 1 297 -15 842 158 8 15 chr15 19581770 19581903 -66113851 + FLAM_A SINE Alu 1 132 -1 2176 106 0 0 chr15 19581995 19582288 -66113466 + AluSx SINE Alu 1 293 -19 289 224 191 61 chr15 19582618 19582765 -66112989 - MIR SINE MIR -91 171 6 1890 148 30 10 chr15 19583232 19583535 -66112219 - AluJo SINE Alu -3 309 1 3357 193 40 9 chr15 19583594 19584247 -66111507 - L1MB5 LINE L1 0 6174 5502 514 271 136 66 chr15 19584269 19584500 -66111254 - L1M4c LINE L1 -6026 358 96 2162 108 0 33 chr15 19584500 19584806 -66110948 + AluSx SINE Alu 1 296 -16 514 271 136 66 chr15 19584806 19584906 -66110848 - L1M4c LINE L1 -6288 96 4 2205 104 0 0 chr15 19585935 19586239 -66109515 - AluSg1 SINE Alu 0 304 1 1721 171 14 10 chr15 19586257 19586549 -66109205 + AluSx SINE Alu 1 293 -19 2020 150 0 7 chr15 19586941 19587247 -66108507 + AluJb SINE Alu 1 304 -8 924 76 17 0 chr15 19588065 19588207 -66107547 + AluSg/x SINE Alu 162 305 0 23 33 0 0 chr15 19589174 19589204 -66106550 + AT_rich Low_complexity Low_complexity 1 30 0 1571 182 65 4 chr15 19589214 19589489 -66106265 + AluJo SINE Alu 1 292 -20 2048 124 0 10 chr15 19589603 19589902 -66105852 + AluSg SINE Alu 1 296 -14 347 286 0 0 chr15 19590375 19590459 -66105295 - L1MC/D LINE L1 -2143 5665 5582 1655 149 15 94 chr15 19590557 19590886 -66104868 - AluJo SINE Alu -9 303 1 663 244 22 39 chr15 19591980 19592160 -66103594 + MER5B DNA MER1_type 2 178 0 1998 121 16 50 chr15 19593586 19593761 -66101993 - AluSx SINE Alu -1 311 150 2419 97 0 0 chr15 19593761 19594061 -66101693 - AluSc SINE Alu -9 300 1 1998 121 16 50 chr15 19594061 19594207 -66101547 - AluSx SINE Alu -162 150 1 258 288 113 50 chr15 19594257 19594428 -66101326 + MIR SINE MIR 8 200 -62 1891 148 0 24 chr15 19594428 19594726 -66101028 - AluSx SINE Alu -21 291 1 258 288 113 50 chr15 19594726 19594794 -66100960 + MIR SINE MIR 200 262 0 284 242 30 0 chr15 19594826 19594892 -66100862 + MIR SINE MIR 65 132 -76 533 307 101 18 chr15 19595223 19595441 -66100313 + MIR SINE MIR 6 241 -21 336 48 0 0 chr15 19595450 19595492 -66100262 + (TCCA)n Simple_repeat Simple_repeat 4 45 0 1777 164 25 0 chr15 19595495 19595770 -66099984 - AluJb SINE Alu -30 282 1 238 319 30 52 chr15 19596172 19596307 -66099447 + L2 LINE L2 2900 3031 -241 2007 65 0 4 chr15 19596359 19596604 -66099150 - AluY SINE Alu -13 298 55 672 231 8 0 chr15 19596918 19597039 -66098715 - FLAM_A SINE Alu -11 122 1 1901 126 0 25 chr15 19598244 19598529 -66097225 + AluSq SINE Alu 1 278 -35 333 0 0 0 chr15 19598534 19598571 -66097183 + (TAA)n Simple_repeat Simple_repeat 2 38 0 22 35 0 0 chr15 19598718 19598747 -66097007 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr15 19599818 19599844 -66095910 + AT_rich Low_complexity Low_complexity 1 26 0 2272 86 3 3 chr15 19600228 19600518 -66095236 - AluSq SINE Alu -20 293 4 210 229 21 0 chr15 19600629 19600677 -66095077 + (CCG)n Simple_repeat Simple_repeat 3 51 0 184 298 65 83 chr15 19601628 19601796 -66093958 - MIR3 SINE MIR -30 178 14 692 187 0 0 chr15 19602317 19602424 -66093330 + FLAM_C SINE Alu 2 108 -35 198 0 0 0 chr15 19602442 19602464 -66093290 + (CA)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr15 19602484 19602505 -66093249 + AT_rich Low_complexity Low_complexity 1 21 0 1890 122 6 110 chr15 19602505 19602840 -66092914 + AluJo SINE Alu 2 301 -1 1741 136 48 18 chr15 19603101 19603373 -66092381 + AluJo SINE Alu 3 282 -30 2670 220 9 24 chr15 19603384 19603934 -66091820 + MLT1F LTR MaLR 1 542 0 245 215 18 0 chr15 19604369 19604445 -66091309 + L1MB8 LINE L1 6105 6182 -2 2360 80 0 7 chr15 19604599 19604899 -66090855 - AluY SINE Alu -13 298 1 268 250 161 24 chr15 19604905 19605073 -66090681 - L2 LINE L2 -12 3301 3111 2180 122 0 0 chr15 19605274 19605569 -66090185 - AluSx SINE Alu -17 295 1 2292 113 0 0 chr15 19605573 19605873 -66089881 - AluSg SINE Alu -10 300 1 2298 90 0 10 chr15 19606278 19606577 -66089177 - AluSq SINE Alu -17 296 1 2325 96 0 0 chr15 19606933 19607226 -66088528 - AluSx SINE Alu -19 293 1 1145 229 25 25 chr15 19607676 19607956 -66087798 - AluJo SINE Alu -31 281 2 2024 94 33 33 chr15 19608325 19608624 -66087130 - AluSq SINE Alu -14 299 1 2612 225 53 57 chr15 19608891 19609978 -66085776 + L1ME2 LINE L1 4971 6163 -1 1781 156 26 13 chr15 19609980 19610288 -66085466 + AluJo SINE Alu 1 312 0 280 278 45 15 chr15 19610431 19610564 -66085190 + L1MC4 LINE L1 7904 8040 -2 1595 194 0 33 chr15 19610572 19610876 -66084878 + AluJo SINE Alu 12 305 -7 761 187 75 43 chr15 19611173 19611360 -66084394 + MIR SINE MIR 70 262 0 3910 110 17 15 chr15 19611544 19612070 -66083684 - MER1A DNA MER1_type 0 527 1 1747 161 55 0 chr15 19612435 19612726 -66083028 - AluJo SINE Alu -5 307 1 2498 57 0 29 chr15 19613347 19613663 -66082091 - AluY SINE Alu -4 307 1 889 165 0 0 chr15 19614642 19614775 -66080979 - FLAM_C SINE Alu 0 133 1 360 356 50 32 chr15 19614806 19615087 -66080667 + L1 LINE L1 2726 3011 -3135 967 136 57 17 chr15 19615190 19615367 -66080387 - AluSg/x SINE Alu -17 293 110 2197 106 0 13 chr15 19615373 19615675 -66080079 + AluSx SINE Alu 1 298 -14 390 281 51 67 chr15 19615720 19615973 -66079781 + L1MDa LINE L1 100 348 -6192 317 325 77 34 chr15 19616232 19616441 -66079313 + L1MDa LINE L1 702 919 -5611 1488 239 90 69 chr15 19616513 19616989 -66078765 + L1MDa LINE L1 908 1373 -5167 1579 176 7 53 chr15 19616989 19617290 -66078464 + AluJo SINE Alu 1 287 -25 1488 239 90 69 chr15 19617290 19617640 -66078114 + L1MDa LINE L1 1373 1726 -4814 714 154 14 98 chr15 19617640 19617753 -66078001 + FLAM_A SINE Alu 1 101 -201 2101 125 0 3 chr15 19617753 19618048 -66077706 - AluSx SINE Alu -18 294 1 714 154 14 98 chr15 19618048 19618077 -66077677 + FLAM_A SINE Alu 101 131 -171 1488 239 90 69 chr15 19618077 19618142 -66077612 + L1MDa LINE L1 1726 1788 -4752 537 237 30 23 chr15 19618145 19618276 -66077478 - MIR SINE MIR -129 133 2 449 281 154 4 chr15 19618282 19618549 -66077205 + L1ME4a LINE L1 5792 6098 -23 1366 172 75 18 chr15 19618572 19618851 -66076903 + AluJo SINE Alu 5 299 -13 204 118 29 0 chr15 19619631 19619665 -66076089 + (CA)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr15 19620438 19620459 -66075295 + AT_rich Low_complexity Low_complexity 1 21 0 1523 182 47 0 chr15 19620459 19620734 -66075020 + AluJo SINE Alu 1 288 -24 216 0 0 0 chr15 19620748 19620772 -66074982 + (CA)n Simple_repeat Simple_repeat 1 24 0 2202 99 3 10 chr15 19621087 19621389 -66074365 + AluSg SINE Alu 1 300 -10 508 308 7 7 chr15 19621496 19621639 -66074115 + MIR SINE MIR 1 143 -119 6969 183 55 30 chr15 19621642 19623135 -66072619 - MER52A LTR ERV1 0 1755 17 454 246 55 9 chr15 19623135 19623245 -66072509 + MIR SINE MIR 148 262 0 307 223 77 39 chr15 19623346 19623476 -66072278 + L1ME4a LINE L1 5718 5852 -269 451 212 129 24 chr15 19623521 19623691 -66072063 + L1ME4a LINE L1 5934 6121 0 652 256 86 48 chr15 19624274 19624610 -66071144 - L1MC4 LINE L1 -237 7805 7457 1014 151 44 0 chr15 19624689 19624848 -66070906 + AluJb SINE Alu 1 166 -146 1017 216 31 14 chr15 19624908 19625130 -66070624 - MIR SINE MIR 0 262 37 8761 40 8 225 chr15 19625150 19626920 -66068834 - SVA Other Other 0 1386 1 29 60 0 0 chr15 19626979 19627029 -66068725 + AT_rich Low_complexity Low_complexity 1 50 0 2199 110 0 0 chr15 19627703 19627993 -66067761 + AluSq SINE Alu 1 290 -23 1770 154 20 24 chr15 19628744 19629042 -66066712 + AluJb SINE Alu 1 297 -15 2037 130 3 10 chr15 19629812 19630113 -66065641 + AluSg SINE Alu 1 299 -11 2103 133 3 0 chr15 19630126 19630428 -66065326 + AluSx SINE Alu 1 303 -9 427 262 166 11 chr15 19630527 19630714 -66065040 - MIR SINE MIR -18 244 29 1747 158 28 3 chr15 19631427 19631712 -66064042 - AluJo SINE Alu -20 292 1 774 274 70 50 chr15 19631741 19632020 -66063734 - L2 LINE L2 -91 3222 2933 2357 86 0 13 chr15 19632020 19632321 -66063433 + AluSc SINE Alu 1 297 -12 774 274 70 50 chr15 19632321 19632399 -66063355 - L2 LINE L2 -380 2933 2858 1108 267 20 32 chr15 19632414 19632758 -66062996 - L2 LINE L2 -572 2742 2403 22 0 0 0 chr15 19633141 19633163 -66062591 + AT_rich Low_complexity Low_complexity 1 22 0 1263 202 46 63 chr15 19633307 19633502 -66062252 - MLT1D LTR MaLR -145 360 172 2402 86 10 0 chr15 19633502 19633804 -66061950 + AluSg SINE Alu 1 305 -5 1263 202 46 63 chr15 19633804 19633955 -66061799 - MLT1D LTR MaLR -333 172 20 2213 129 21 37 chr15 19634231 19634612 -66061142 + THE1C LTR MaLR 1 375 0 1789 165 7 0 chr15 19634805 19635096 -66060658 + AluJb SINE Alu 5 297 -15 1437 132 68 34 chr15 19635713 19635948 -66059806 + AluJo SINE Alu 49 291 -21 213 65 0 0 chr15 19635948 19635979 -66059775 + (TA)n Simple_repeat Simple_repeat 2 32 0 296 236 112 22 chr15 19636093 19636182 -66059572 - MER34 LTR ERV1 -29 513 417 1585 153 4 0 chr15 19636357 19636598 -66059156 + AluJo SINE Alu 49 290 -22 2243 101 3 10 chr15 19636610 19636918 -66058836 + AluSx SINE Alu 1 306 -6 2007 159 156 17 chr15 19636932 19637354 -66058400 - L1MC3 LINE L1 -163 7622 7142 1651 150 4 8 chr15 19637369 19637636 -66058118 + AluJb SINE Alu 34 299 -13 672 203 160 0 chr15 19637636 19637823 -66057931 + L1ME2 LINE L1 5697 5913 -251 1343 285 98 60 chr15 19637863 19638118 -66057636 + ERVL LTR ERVL 3678 3922 -1386 2358 101 0 0 chr15 19638118 19638424 -66057330 - AluSx SINE Alu -6 306 1 1343 285 98 60 chr15 19638424 19638476 -66057278 + ERVL LTR ERVL 3922 3971 -1337 1979 141 14 10 chr15 19638476 19638773 -66056981 - AluJo SINE Alu -14 298 1 1343 285 98 60 chr15 19638773 19639128 -66056626 + ERVL LTR ERVL 3971 4678 -630 3436 165 24 24 chr15 19639134 19639764 -66055990 - L1MB7 LINE L1 -112 6072 5443 2154 126 12 27 chr15 19639766 19639914 -66055840 - MER6 DNA MER2_type -3 862 713 2323 81 10 0 chr15 19639914 19640209 -66055545 - AluSp SINE Alu -15 298 1 2154 126 12 27 chr15 19640209 19640394 -66055360 - MER6 DNA MER2_type -152 713 274 2605 49 0 0 chr15 19640450 19640755 -66054999 - AluY SINE Alu -6 305 1 2616 43 0 0 chr15 19640930 19641232 -66054522 - AluY SINE Alu -9 302 1 28 0 0 0 chr15 19641273 19641301 -66054453 + AT_rich Low_complexity Low_complexity 1 28 0 328 266 138 15 chr15 19642603 19642806 -66052948 - HAL1b LINE L1 -627 721 494 884 165 37 0 chr15 19643004 19643168 -66052586 - AluJb SINE Alu -5 307 138 276 173 0 0 chr15 19643268 19643320 -66052434 + Alu SINE Alu 257 308 0 2451 100 0 0 chr15 19643363 19643672 -66052082 - AluSc SINE Alu 0 309 1 372 290 37 9 chr15 19643947 19644054 -66051700 + MER5B DNA MER1_type 66 175 -3 251 234 0 0 chr15 19644059 19644106 -66051648 + MER3 DNA MER1_type 42 88 -121 * 762 182 81 50 chr15 19644070 19644226 -66051528 - MER3 DNA MER1_type -5 204 39 2303 92 0 0 chr15 19644226 19644521 -66051233 - AluY SINE Alu -16 295 1 762 182 81 50 chr15 19644521 19644562 -66051192 - MER3 DNA MER1_type -170 39 1 381 171 83 72 chr15 19644626 19644819 -66050935 + Charlie7 DNA MER1_type 2414 2608 -4 21 71 0 0 chr15 19644941 19644983 -66050771 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr15 19646945 19646971 -66048783 + AT_rich Low_complexity Low_complexity 1 26 0 1638 154 20 50 chr15 19646971 19647270 -66048484 - AluJo SINE Alu -21 291 2 1178 272 81 45 chr15 19647292 19647407 -66048347 + L1MC4 LINE L1 5292 5401 -2407 1905 145 13 35 chr15 19647407 19647725 -66048029 + AluSq SINE Alu 1 311 -2 1178 272 81 45 chr15 19647725 19648164 -66047590 + L1MC4 LINE L1 5401 5866 -1942 22 0 0 0 chr15 19648633 19648655 -66047099 + AT_rich Low_complexity Low_complexity 1 22 0 216 306 0 0 chr15 19649758 19649807 -66045947 - L2 LINE L2 -15 3257 3209 591 246 185 73 chr15 19649808 19650047 -66045707 + L1MC4 LINE L1 7316 7527 -515 2129 137 0 3 chr15 19650047 19650360 -66045394 + AluSx SINE Alu 1 312 0 591 246 185 73 chr15 19650360 19650530 -66045224 + L1MC4 LINE L1 7527 7771 -271 28 0 0 0 chr15 19651543 19651571 -66044183 + AT_rich Low_complexity Low_complexity 1 28 0 197 273 0 0 chr15 19651686 19651730 -66044024 - L2 LINE L2 0 3272 3229 2280 102 7 0 chr15 19652563 19652866 -66042888 + AluSg SINE Alu 1 305 -5 23 0 0 0 chr15 19652873 19652896 -66042858 + AT_rich Low_complexity Low_complexity 1 23 0 2217 128 0 3 chr15 19652900 19653212 -66042542 + AluSx SINE Alu 1 311 -1 204 40 0 0 chr15 19653213 19653238 -66042516 + (CA)n Simple_repeat Simple_repeat 2 26 0 331 303 160 6 chr15 19653606 19653781 -66041973 + LTR16B LTR ERVL 263 464 0 21 82 0 0 chr15 19654174 19654223 -66041531 + AT_rich Low_complexity Low_complexity 1 49 0 245 188 29 0 chr15 19654389 19654458 -66041296 + (CATA)n Simple_repeat Simple_repeat 3 73 0 474 265 122 0 chr15 19655075 19655222 -66040532 - MIR3 SINE MIR -14 194 30 2240 74 0 44 chr15 19655839 19656162 -66039592 + AluSg SINE Alu 1 310 0 22 0 0 0 chr15 19656442 19656464 -66039290 + AT_rich Low_complexity Low_complexity 1 22 0 1010 123 0 0 chr15 19657329 19657459 -66038295 + AluSg SINE Alu 1 130 -180 2174 98 0 33 chr15 19657462 19657768 -66037986 + AluSg SINE Alu 1 296 -14 24 0 0 0 chr15 19657768 19657792 -66037962 + AT_rich Low_complexity Low_complexity 1 24 0 1815 156 6 19 chr15 19657920 19658056 -66037698 + AluSx SINE Alu 1 137 -175 2070 104 11 4 chr15 19658056 19658392 -66037362 + AluSg SINE Alu 1 338 0 1815 156 6 19 chr15 19658392 19658568 -66037186 + AluSx SINE Alu 137 310 -2 263 211 9 140 chr15 19658659 19658713 -66037041 + L1ME LINE L1 5563 5596 -525 2157 102 40 7 chr15 19658713 19659016 -66036738 + AluSp SINE Alu 1 313 0 263 211 9 140 chr15 19659016 19659075 -66036679 + L1ME LINE L1 5596 5661 -460 3258 24 5 0 chr15 19659507 19659926 -66035828 - L1P LINE L1 -772 5374 4954 2260 11 0 11 chr15 19659926 19660187 -66035567 + L1PA2 LINE L1 5889 6148 -7 446 114 14 0 chr15 19661026 19661096 -66034658 - L1PA10 LINE L1 0 6168 6098 2138 143 0 6 chr15 19661164 19661478 -66034276 + AluSx SINE Alu 1 312 0 277 190 17 17 chr15 19662057 19662115 -66033639 + MIR3 SINE MIR 119 176 -32 2155 91 53 0 chr15 19662425 19662710 -66033044 + AluSx SINE Alu 1 300 -12 57 103 0 0 chr15 19663009 19663213 -66032541 + AT_rich Low_complexity Low_complexity 1 204 0 355 137 8 145 chr15 19663265 19663389 -66032365 + L1MB3 LINE L1 4972 5078 -1068 * 5534 43 0 0 chr15 19663388 19664100 -66031654 - L1PA5 LINE L1 -1605 4541 3830 6983 47 13 10 chr15 19664102 19665703 -66030051 + L1PA5 LINE L1 4546 6154 0 4110 142 35 13 chr15 19665714 19666644 -66029110 + L1MB3 LINE L1 5071 6019 -164 22 35 0 0 chr15 19666645 19666674 -66029080 + AT_rich Low_complexity Low_complexity 1 29 0 1741 157 23 30 chr15 19667462 19667762 -66027992 - AluJb SINE Alu -13 299 2 22 35 0 0 chr15 19668416 19668445 -66027309 + AT_rich Low_complexity Low_complexity 1 29 0 2307 97 0 13 chr15 19668627 19668936 -66026818 + AluSg SINE Alu 1 305 -5 1774 169 0 27 chr15 19669193 19669488 -66026266 + AluJb SINE Alu 1 287 -25 240 59 0 0 chr15 19669488 19669522 -66026232 + (CA)n Simple_repeat Simple_repeat 2 35 0 344 343 74 29 chr15 19669899 19670141 -66025613 - L2 LINE L2 -1291 2023 1771 197 193 193 0 chr15 19671395 19671452 -66024302 + MIR SINE MIR 1 68 -194 266 148 19 74 chr15 19671484 19671538 -66024216 + MIR SINE MIR 55 105 -157 422 312 8 0 chr15 19671801 19671926 -66023828 + MIR SINE MIR 127 252 -10 2064 88 81 4 chr15 19671945 19672218 -66023536 + AluSc SINE Alu 1 294 -15 234 265 193 12 chr15 19673180 19673263 -66022491 - L2 LINE L2 -52 3220 3123 2205 51 0 0 chr15 19673310 19673563 -66022191 + AluY SINE Alu 13 265 -46 429 235 8 0 chr15 19673857 19673965 -66021789 + MER5A DNA MER1_type 1 109 -80 1611 175 12 0 chr15 19673977 19674229 -66021525 - AluJo SINE Alu -21 291 37 5753 106 14 23 chr15 19674289 19674444 -66021310 + L1PA13 LINE L1 5162 5317 -846 2095 112 0 45 chr15 19674444 19674758 -66020996 + AluSx SINE Alu 1 300 -12 5753 106 14 23 chr15 19674758 19675607 -66020147 + L1PA13 LINE L1 5317 6161 -2 806 307 82 39 chr15 19676077 19676491 -66019263 + L3 LINE CR1 996 1427 -150 332 330 194 10 chr15 19676868 19677074 -66018680 + MIR SINE MIR 6 249 -13 1293 186 0 14 chr15 19677610 19677831 -66017923 - AluJo SINE Alu -13 299 82 900 107 0 0 chr15 19677844 19677966 -66017788 - AluSc SINE Alu -12 297 176 428 179 0 0 chr15 19677986 19678053 -66017701 + MER2 DNA MER2_type 279 345 0 1856 146 7 10 chr15 19678084 19678386 -66017368 + AluJo SINE Alu 1 301 -11 2091 117 7 0 chr15 19679187 19679470 -66016284 + AluSx SINE Alu 9 293 -19 2169 117 0 3 chr15 19679649 19679957 -66015797 + AluSx SINE Alu 1 307 -5 212 0 36 0 chr15 19680716 19680744 -66015010 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2237 107 0 3 chr15 19681928 19682226 -66013528 - AluSx SINE Alu -15 297 1 200 194 0 0 chr15 19682826 19682862 -66012892 + (CATA)n Simple_repeat Simple_repeat 2 37 0 759 164 8 22 chr15 19683247 19683381 -66012373 - FLAM_C SINE Alu -1 132 1 537 243 99 50 chr15 19684691 19684872 -66010882 - MIR SINE MIR -70 192 3 564 251 5 36 chr15 19685180 19685375 -66010379 + L1PBa LINE L1 6 194 -6669 905 113 38 13 chr15 19685375 19685534 -66010220 + L1PB1 LINE L1 5627 5789 -362 315 191 0 0 chr15 19685537 19685600 -66010154 + (CA)n Simple_repeat Simple_repeat 2 64 0 2332 119 0 22 chr15 19685605 19685976 -66009778 + L1PB1 LINE L1 5781 6143 -8 1593 174 26 3 chr15 19685984 19686295 -66009459 + L1MB2 LINE L1 5465 5782 -401 195 129 0 0 chr15 19686330 19686361 -66009393 + (TA)n Simple_repeat Simple_repeat 2 32 0 1336 151 57 8 chr15 19686361 19686626 -66009128 + L1MB2 LINE L1 5892 6169 -2 620 157 167 0 chr15 19686646 19686754 -66009000 - FRAM SINE Alu -30 146 21 795 167 0 0 chr15 19687539 19687665 -66008089 + FLAM_C SINE Alu 2 127 -6 2166 98 3 35 chr15 19687735 19688051 -66007703 - AluSp SINE Alu -6 307 2 377 329 148 30 chr15 19688171 19688536 -66007218 + L3 LINE CR1 1087 1494 -83 2254 103 24 0 chr15 19688594 19688886 -66006868 - AluSx SINE Alu -13 299 1 22 0 0 0 chr15 19689029 19689051 -66006703 + AT_rich Low_complexity Low_complexity 1 22 0 342 306 16 0 chr15 19689252 19689376 -66006378 + T-rich Low_complexity Low_complexity 1 126 0 2239 103 60 0 chr15 19689377 19689725 -66006029 - L1PA11 LINE L1 -2 6172 5804 5544 141 24 4 chr15 19689725 19690745 -66005009 - L1M LINE L1 -743 5403 4379 899 153 0 0 chr15 19690803 19690940 -66004814 - FLAM_C SINE Alu -6 137 1 356 257 44 81 chr15 19691087 19691223 -66004531 + MIR SINE MIR 132 262 0 22 80 0 0 chr15 19691700 19691750 -66004004 + AT_rich Low_complexity Low_complexity 1 50 0 223 186 0 0 chr15 19692088 19692131 -66003623 + A-rich Low_complexity Low_complexity 1 43 0 1868 176 10 3 chr15 19692201 19692503 -66003251 - AluJb SINE Alu -8 304 1 632 211 55 62 chr15 19692549 19692629 -66003125 - MER113 DNA MER1_type? -98 423 344 1853 114 0 8 chr15 19692629 19692894 -66002860 - AluSx SINE Alu 0 312 44 632 211 55 62 chr15 19692894 19693069 -66002685 - MER113 DNA MER1_type? -177 344 170 195 243 111 97 chr15 19693121 19693265 -66002489 + MIR SINE MIR 61 206 -56 2284 75 10 0 chr15 19693298 19693591 -66002163 - AluY SINE Alu -15 296 1 219 296 93 43 chr15 19693636 19693798 -66001956 - MIR SINE MIR -70 192 23 234 0 0 0 chr15 19694265 19694291 -66001463 + (A)n Simple_repeat Simple_repeat 1 26 0 1184 159 48 71 chr15 19695365 19695660 -66000094 + L1MB2 LINE L1 5884 6171 0 255 370 0 0 chr15 19695663 19695736 -66000018 - MIR SINE MIR -102 106 34 597 169 17 16 chr15 19695788 19695940 -65999814 + L1M4 LINE L1 5371 5517 -667 241 143 20 20 chr15 19695955 19696004 -65999750 + L1M4 LINE L1 4285 4333 -1813 905 165 183 0 chr15 19696004 19696168 -65999586 - AluJb SINE Alu -118 194 1 262 120 0 0 chr15 19696211 19696261 -65999493 + L1M4 LINE L1 3829 3878 -2268 228 108 0 0 chr15 19696270 19696307 -65999447 - L1M4 LINE L1 -1890 4256 4220 631 114 0 0 chr15 19696309 19696397 -65999357 - AluJ/FLAM SINE Alu -214 98 11 290 106 0 0 chr15 19696423 19696470 -65999284 - Tigger2 DNA MER2_type -2480 238 192 1638 211 36 3 chr15 19696470 19696854 -65998900 - L1M4 LINE L1 -1921 4225 3829 2016 141 40 0 chr15 19696897 19697195 -65998559 + AluSx SINE Alu 1 310 -2 523 268 73 29 chr15 19697225 19697607 -65998147 - L1MC4 LINE L1 -650 7392 7000 438 252 196 56 chr15 19697667 19697953 -65997801 - L1MC4 LINE L1 -976 7066 6741 2024 113 39 3 chr15 19698454 19698737 -65997017 - AluSx SINE Alu -19 293 1 1300 25 0 13 chr15 19699454 19699613 -65996141 - L1PA2 LINE L1 -1 6154 5998 2452 77 3 0 chr15 19699634 19699931 -65995823 - AluSp SINE Alu -15 298 1 279 0 0 0 chr15 19699973 19700004 -65995750 + (TCTCCC)n Simple_repeat Simple_repeat 3 33 0 6390 69 46 24 chr15 19700012 19701676 -65994078 + SVA Other Other 50 1380 -6 233 29 29 0 chr15 19701682 19701716 -65994038 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 974 206 0 6 chr15 19702702 19702867 -65992887 + AluJo SINE Alu 1 164 -148 767 152 8 24 chr15 19703203 19703328 -65992426 + FLAM_C SINE Alu 3 125 -18 21 57 0 0 chr15 19703334 19703369 -65992385 + AT_rich Low_complexity Low_complexity 1 35 0 483 259 147 45 chr15 19703376 19703514 -65992240 + HAL1b LINE L1 214 337 -1011 2301 63 0 11 chr15 19703514 19703827 -65991927 + AluY SINE Alu 1 310 0 483 259 147 45 chr15 19703827 19704042 -65991712 + HAL1b LINE L1 337 604 -744 1338 235 59 6 chr15 19704056 19704379 -65991375 - MER58B DNA MER1_type 0 341 2 3768 146 27 33 chr15 19704389 19704689 -65991065 - L1MC2 LINE L1 -350 5994 5694 2127 118 14 0 chr15 19704689 19704977 -65990777 + AluSx SINE Alu 1 292 -20 3768 146 27 33 chr15 19704977 19705153 -65990601 - L1MC2 LINE L1 -650 5694 5518 2226 116 7 0 chr15 19705153 19705463 -65990291 + AluSp SINE Alu 1 312 -1 3768 146 27 33 chr15 19705463 19705800 -65989954 - L1MC2 LINE L1 -826 5518 5186 452 253 21 27 chr15 19705795 19705981 -65989773 + L1ME LINE L1 5598 5782 -339 * 25 83 0 0 chr15 19706022 19706082 -65989672 + AT_rich Low_complexity Low_complexity 1 60 0 250 340 40 10 chr15 19706539 19706639 -65989115 + L3 LINE CR1 1465 1567 -10 225 361 8 0 chr15 19706788 19706907 -65988847 - MARNA DNA Mariner -345 241 122 493 256 58 16 chr15 19707152 19707273 -65988481 + L2 LINE L2 3187 3312 -1 2044 108 7 36 chr15 19707393 19707698 -65988056 - AluSx SINE Alu -16 296 1 2157 101 0 7 chr15 19707777 19708064 -65987690 + AluSp SINE Alu 1 285 -28 186 0 40 0 chr15 19708064 19708089 -65987665 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 884 159 43 37 chr15 19708170 19708333 -65987421 - MER20 DNA MER1_type -1 218 55 2207 95 7 0 chr15 19708474 19708768 -65986986 - AluSg1 SINE Alu -13 296 1 785 225 45 27 chr15 19709106 19709328 -65986426 + MER46C DNA MER2_type 1 226 -112 21 71 0 0 chr15 19709515 19709557 -65986197 + AT_rich Low_complexity Low_complexity 1 42 0 2037 104 0 112 chr15 19709617 19709955 -65985799 + AluSx SINE Alu 1 300 -2 657 209 31 19 chr15 19710633 19710883 -65984871 + L1MC4a LINE L1 5078 5504 -662 818 156 78 13 chr15 19710898 19711052 -65984702 + FAM SINE Alu 1 46 -3 2476 66 0 0 chr15 19711140 19711441 -65984313 + AluY SINE Alu 1 301 -10 626 239 233 21 chr15 19711636 19711967 -65983787 + L1MC4a LINE L1 5548 5948 -1860 236 285 85 0 chr15 19712283 19712385 -65983369 + L1MC/D LINE L1 5682 5790 -416 22 80 0 0 chr15 19712442 19712492 -65983262 + AT_rich Low_complexity Low_complexity 1 50 0 948 155 0 0 chr15 19712506 19712648 -65983106 - AluSp/q SINE Alu -7 306 165 2299 95 0 0 chr15 19712906 19713191 -65982563 + AluSx SINE Alu 11 295 -17 2232 87 0 11 chr15 19713227 19713513 -65982241 + AluY SINE Alu 1 283 -28 198 0 0 0 chr15 19713517 19713539 -65982215 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 580 138 100 92 chr15 19713624 19713754 -65982000 - FLAM_A SINE Alu -2 131 1 1616 203 70 10 chr15 19713758 19714157 -65981597 + L1MC4a LINE L1 7372 7794 -14 38 51 0 0 chr15 19714425 19714484 -65981270 + AT_rich Low_complexity Low_complexity 1 59 0 475 266 7 52 chr15 19714767 19714921 -65980833 - MIR3 SINE MIR -52 156 10 2344 97 6 0 chr15 19714943 19715254 -65980500 - AluSp SINE Alu 0 313 1 752 126 200 0 chr15 19715339 19715474 -65980280 + MER46A DNA MER2_type 73 234 -2 2020 93 114 0 chr15 19715673 19715953 -65979801 + AluSx SINE Alu 1 312 0 936 185 12 0 chr15 19715953 19716115 -65979639 + AluSg/x SINE Alu 132 295 -15 319 246 114 48 chr15 19716337 19716504 -65979250 + L2 LINE L2 3129 3306 -7 2410 79 0 0 chr15 19716577 19716868 -65978886 - AluSc SINE Alu -18 291 1 1751 154 9 38 chr15 19717517 19717835 -65977919 + AluJb SINE Alu 3 311 -1 271 273 130 39 chr15 19717841 19717995 -65977759 - L3 LINE CR1 -205 1372 1205 2061 96 18 11 chr15 19718171 19718481 -65977273 + AluSx SINE Alu 6 312 0 224 140 0 53 chr15 19718495 19718552 -65977202 + (T)n Simple_repeat Simple_repeat 1 54 0 566 229 294 14 chr15 19718594 19718887 -65976867 - L3 LINE CR1 -603 974 600 15973 125 32 6 chr15 19719872 19720183 -65975571 - Tigger1 DNA MER2_type 0 2418 2117 2165 102 41 0 chr15 19720183 19720478 -65975276 - AluSx SINE Alu -5 307 1 15973 125 32 6 chr15 19720478 19722522 -65973232 - Tigger1 DNA MER2_type -301 2117 1 2131 104 45 0 chr15 19723073 19723360 -65972394 + AluSx SINE Alu 3 302 -10 651 210 35 21 chr15 19723465 19723608 -65972146 + L1ME1 LINE L1 6016 6160 -6 210 37 0 0 chr15 19723672 19723699 -65972055 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 283 310 70 0 chr15 19723711 19723811 -65971943 - L2 LINE L2 -44 3228 3122 2399 82 0 0 chr15 19723897 19724191 -65971563 - AluY SINE Alu -17 294 1 363 269 42 71 chr15 19724507 19724571 -65971183 - L2 LINE L2 0 3313 3249 2389 70 3 0 chr15 19724571 19724858 -65970896 + AluSc SINE Alu 1 288 -21 363 269 42 71 chr15 19724858 19725005 -65970749 - L2 LINE L2 -64 3249 3108 944 261 133 25 chr15 19725067 19725435 -65970319 - L2 LINE L2 -338 2976 2569 409 298 25 97 chr15 19725488 19725564 -65970190 + L2 LINE L2 2351 2431 -883 1645 149 0 8 chr15 19725564 19725701 -65970053 + AluSx SINE Alu 1 137 -175 2237 104 3 10 chr15 19725701 19726010 -65969744 + AluSx SINE Alu 1 307 -5 1645 149 0 8 chr15 19726010 19726120 -65969634 + AluSx SINE Alu 137 246 -66 409 298 25 97 chr15 19726120 19726362 -65969392 + L2 LINE L2 2431 2646 -668 * 682 234 54 22 chr15 19726358 19726542 -65969212 - L2 LINE L2 -977 2337 2148 1949 160 3 0 chr15 19726904 19727192 -65968562 + AluSx SINE Alu 1 289 -23 1138 182 11 5 chr15 19727204 19727391 -65968363 + AluJb SINE Alu 105 292 -20 411 195 45 46 chr15 19727454 19727566 -65968188 + MER5A DNA MER1_type 2 102 -76 1855 94 3 94 chr15 19728757 19729066 -65966688 + AluSq SINE Alu 23 303 -10 295 266 154 30 chr15 19730578 19730747 -65965007 + L1MC4a LINE L1 5716 5905 -1903 26 64 0 0 chr15 19730873 19730920 -65964834 + AT_rich Low_complexity Low_complexity 1 47 0 267 246 80 125 chr15 19731066 19731330 -65964424 + MER112 DNA MER1_type 8 259 -1 2348 103 3 3 chr15 19731456 19731767 -65963987 + AluSq SINE Alu 1 311 -2 356 264 31 78 chr15 19731853 19731982 -65963772 - MIR SINE MIR -84 178 56 780 120 51 17 chr15 19731987 19732104 -65963650 + FLAM_C SINE Alu 7 127 -16 2289 98 3 0 chr15 19732244 19732540 -65963214 - AluSp SINE Alu -16 297 1 3883 129 21 20 chr15 19732562 19733172 -65962582 + L1MB3 LINE L1 5572 6182 -1 2338 97 0 0 chr15 19733180 19733479 -65962275 + AluSx SINE Alu 1 299 -13 352 333 53 47 chr15 19733494 19733549 -65962205 + L1ME LINE L1 4931 4984 -1162 2453 73 0 3 chr15 19733549 19733850 -65961904 - AluSg SINE Alu -10 300 1 352 333 53 47 chr15 19733850 19733919 -65961835 + L1ME LINE L1 4984 5051 -1095 1903 148 3 3 chr15 19733919 19734209 -65961545 - AluJb SINE Alu -22 290 1 352 333 53 47 chr15 19734209 19734404 -65961350 + L1ME LINE L1 5051 5253 -893 2000 152 0 0 chr15 19734418 19734720 -65961034 + AluJb SINE Alu 1 302 -10 583 281 106 64 chr15 19734724 19735029 -65960725 + L1ME LINE L1 5298 5634 -487 2409 82 0 3 chr15 19735029 19735333 -65960421 + AluSg1 SINE Alu 1 303 -6 583 281 106 64 chr15 19735333 19735529 -65960225 + L1ME LINE L1 5634 5820 -301 245 279 59 15 chr15 19735529 19735597 -65960157 + Charlie1 DNA MER1_type 20 90 -2671 964 173 28 0 chr15 19735598 19735777 -65959977 + AluJb SINE Alu 118 301 -11 3057 156 85 60 chr15 19735838 19736557 -65959197 + Charlie1 DNA MER1_type 1421 2157 -604 970 51 80 43 chr15 19736557 19736695 -65959059 + AluSg1 SINE Alu 1 143 -166 1721 177 105 47 chr15 19736723 19736848 -65958906 + Charlie1 DNA MER1_type 2156 2272 -489 2251 62 25 68 chr15 19736848 19737000 -65958754 + AluSg SINE Alu 1 133 -177 2392 63 3 0 chr15 19737000 19737287 -65958467 + AluY SINE Alu 7 294 -17 2251 62 25 68 chr15 19737287 19737458 -65958296 + AluSg SINE Alu 133 310 0 1721 177 105 47 chr15 19737458 19737476 -65958278 + Charlie1 DNA MER1_type 2272 2288 -473 2104 67 7 77 chr15 19737476 19737809 -65957945 + AluSq SINE Alu 6 317 0 1721 177 105 47 chr15 19737809 19737929 -65957825 + Charlie1 DNA MER1_type 2288 2400 -361 2655 45 0 0 chr15 19737929 19738240 -65957514 + AluY SINE Alu 1 311 0 1721 177 105 47 chr15 19738240 19738441 -65957313 + Charlie1 DNA MER1_type 2400 2650 -111 1116 98 0 52 chr15 19738441 19738614 -65957140 - AluSg/x SINE Alu -4 308 145 359 204 68 58 chr15 19738862 19738965 -65956789 + MER5B DNA MER1_type 5 108 -70 2282 91 0 0 chr15 19738968 19739266 -65956488 + AluY SINE Alu 14 311 0 1925 164 7 0 chr15 19739285 19739595 -65956159 + AluSx SINE Alu 1 312 0 243 61 0 0 chr15 19739640 19739673 -65956081 + (T)n Simple_repeat Simple_repeat 1 33 0 206 259 0 19 chr15 19740547 19740601 -65955153 + MER5B DNA MER1_type 126 178 0 1063 176 101 17 chr15 19740696 19740934 -65954820 - AluJo SINE Alu -19 293 36 1593 246 80 26 chr15 19741193 19741619 -65954135 - LTR16A LTR ERVL -1 449 1 775 59 0 126 chr15 19741681 19741800 -65953954 + AluSc SINE Alu 2 105 -204 2185 96 0 11 chr15 19741814 19742094 -65953660 + AluSc SINE Alu 2 278 -31 197 33 33 0 chr15 19742097 19742127 -65953627 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 280 336 129 0 chr15 19742176 19742316 -65953438 + MIR SINE MIR 49 206 -56 424 270 72 20 chr15 19742943 19743095 -65952659 - MIR SINE MIR -63 199 40 863 186 32 6 chr15 19743911 19744067 -65951687 + MER8 DNA MER2_type 1 160 -79 21 36 0 0 chr15 19744067 19744095 -65951659 + AT_rich Low_complexity Low_complexity 1 28 0 1086 163 0 0 chr15 19744095 19744255 -65951499 - AluSg/x SINE Alu -27 283 124 2357 93 3 0 chr15 19744255 19744565 -65951189 - AluSx SINE Alu -1 311 1 641 111 22 0 chr15 19744566 19744656 -65951098 + MER8 DNA MER2_type 147 238 -1 2181 155 22 11 chr15 19744698 19745059 -65950695 - MLT1A1 LTR MaLR 0 365 1 1611 152 14 22 chr15 19745093 19745369 -65950385 + AluJb SINE Alu 11 284 -28 1164 61 7 0 chr15 19745398 19745546 -65950208 - L1PA6 LINE L1 -4 6150 6002 1020 184 206 0 chr15 19745898 19746176 -65949578 + MER58B DNA MER1_type 1 340 -1 322 253 21 11 chr15 19746232 19746327 -65949427 + HAL1 LINE L1 2107 2202 -305 459 0 0 0 chr15 19747558 19747609 -65948145 + (TG)n Simple_repeat Simple_repeat 2 52 0 21 57 0 0 chr15 19747661 19747696 -65948058 + AT_rich Low_complexity Low_complexity 1 35 0 1168 83 0 0 chr15 19747907 19748051 -65947703 - AluSp/q SINE Alu -14 299 156 363 288 58 37 chr15 19748205 19748396 -65947358 - L1ME LINE L1 -328 5793 5599 603 204 0 0 chr15 19748405 19748513 -65947241 + AluY SINE Alu 2 109 -202 337 303 112 62 chr15 19748518 19749112 -65946642 - HAL1 LINE L1 -1205 1302 876 32 26 0 0 chr15 19749307 19749346 -65946408 + AT_rich Low_complexity Low_complexity 1 39 0 1443 189 79 0 chr15 19749386 19749651 -65946103 - AluJb SINE Alu -26 286 1 1986 150 0 10 chr15 19749661 19749961 -65945793 - AluSx SINE Alu -15 297 1 530 123 0 14 chr15 19749961 19750034 -65945720 + MER2 DNA MER2_type 274 345 0 1624 139 29 0 chr15 19750034 19750307 -65945447 - L1MB3 LINE L1 -82 6101 5821 1263 135 10 13 chr15 19750422 19750440 -65945314 + L1MB4 LINE L1 5649 5666 -494 3607 122 4 9 chr15 19750440 19750964 -65944790 + L1PA15 LINE L1 5642 6162 -3 1263 135 10 13 chr15 19750964 19751171 -65944583 + L1MB4 LINE L1 5666 5876 -284 295 136 0 0 chr15 19751174 19751218 -65944536 + L1MB4 LINE L1 6074 6117 -63 1673 170 0 14 chr15 19751220 19751503 -65944251 - AluJb SINE Alu -33 279 1 24 0 0 0 chr15 19751516 19751540 -65944214 + AT_rich Low_complexity Low_complexity 1 24 0 1845 113 0 19 chr15 19751542 19751835 -65943919 + AluSx SINE Alu 26 313 0 1904 134 11 14 chr15 19751965 19752242 -65943512 + AluSq SINE Alu 1 276 -37 4566 70 19 6 chr15 19752759 19753774 -65941980 + MER11A LTR ERVK 1 1261 -5 181 384 71 0 chr15 19754343 19754455 -65941299 + L2 LINE L2 2832 2951 -363 2014 116 0 11 chr15 19754622 19754907 -65940847 - AluSc SINE Alu -27 282 1 21 71 0 0 chr15 19755117 19755159 -65940595 + AT_rich Low_complexity Low_complexity 1 42 0 2565 68 0 0 chr15 19755256 19755563 -65940191 + AluY SINE Alu 1 307 -4 207 0 0 0 chr15 19755567 19755590 -65940164 + (TA)n Simple_repeat Simple_repeat 1 23 0 2507 74 0 3 chr15 19756321 19756630 -65939124 + AluY SINE Alu 1 308 -3 1439 93 121 31 chr15 19757575 19757832 -65937922 + AluJo SINE Alu 2 281 -31 287 228 81 73 chr15 19757958 19758081 -65937673 - MIR SINE MIR -50 212 89 26 0 0 0 chr15 19758412 19758438 -65937316 + GC_rich Low_complexity Low_complexity 1 26 0 186 257 201 42 chr15 19759129 19759273 -65936481 - MIR3 SINE MIR -24 184 18 1277 55 6 0 chr15 19760514 19760677 -65935077 - L1PA7 LINE L1 0 6154 5991 1133 189 32 25 chr15 19760751 19761036 -65934718 + L1ME1 LINE L1 5862 6148 -18 22 70 0 0 chr15 19761049 19761092 -65934662 + AT_rich Low_complexity Low_complexity 1 43 0 1945 137 0 40 chr15 19761092 19761392 -65934362 - AluSx SINE Alu -24 288 1 1763 170 17 14 chr15 19761400 19761688 -65934066 - AluJo SINE Alu -23 289 1 21 0 0 0 chr15 19763187 19763208 -65932546 + AT_rich Low_complexity Low_complexity 1 21 0 619 202 25 8 chr15 19763351 19763470 -65932284 - FLAM_A SINE Alu -12 121 1 7031 109 19 7 chr15 19763611 19764709 -65931045 + Tigger1 DNA MER2_type 1 1111 -1307 7879 100 38 25 chr15 19765906 19766797 -65928957 + Tigger1 DNA MER2_type 1105 1983 -435 2395 80 3 0 chr15 19766797 19767098 -65928656 - AluSg SINE Alu -8 302 1 7879 100 38 25 chr15 19767098 19767295 -65928459 + Tigger1 DNA MER2_type 1983 2176 -242 2079 136 7 3 chr15 19767295 19767605 -65928149 - AluJb SINE Alu -1 311 1 7879 100 38 25 chr15 19767605 19767699 -65928055 + Tigger1 DNA MER2_type 2176 2267 -151 2233 124 0 0 chr15 19767699 19767997 -65927757 - AluSx SINE Alu -14 298 1 7879 100 38 25 chr15 19767997 19768110 -65927644 + Tigger1 DNA MER2_type 2267 2418 0 749 44 0 0 chr15 19769665 19769755 -65925999 + AluY SINE Alu 208 297 -14 22 56 0 0 chr15 19769790 19769826 -65925928 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr15 19769837 19769858 -65925896 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr15 19770318 19770344 -65925410 + AT_rich Low_complexity Low_complexity 1 26 0 1944 151 0 10 chr15 19770423 19770722 -65925032 - AluY SINE Alu -15 296 1 204 208 146 0 chr15 19771038 19771086 -65924668 - L2 LINE L2 -2 3270 3216 2182 127 0 0 chr15 19772189 19772481 -65923273 - AluSx SINE Alu -20 292 1 439 304 41 35 chr15 19772984 19773155 -65922599 + MER5A DNA MER1_type 2 173 -16 302 184 109 34 chr15 19773170 19773187 -65922567 - L1MA10 LINE L1 0 6334 6318 1645 217 102 2 chr15 19773187 19773620 -65922134 - L1ME2 LINE L1 -10 6154 5679 251 230 20 60 chr15 19773715 19773815 -65921939 + MIR SINE MIR 121 216 -46 432 289 16 16 chr15 19774608 19774729 -65921025 - MER5A DNA MER1_type -8 181 61 1391 103 5 5 chr15 19774754 19774939 -65920815 - AluSq SINE Alu -128 185 1 184 186 85 34 chr15 19774939 19774998 -65920756 + MER5A DNA MER1_type 127 188 -1 340 281 14 29 chr15 19775951 19776090 -65919664 - MLT1I LTR MaLR -205 204 68 1860 105 126 4 chr15 19776281 19776558 -65919196 + AluSx SINE Alu 2 312 0 219 36 0 0 chr15 19777602 19777630 -65918124 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1943 132 0 0 chr15 19777632 19777912 -65917842 - AluSx SINE Alu -32 280 1 319 244 127 41 chr15 19778233 19778430 -65917324 - L1ME LINE L1 -333 5788 5575 3778 118 12 60 chr15 19778486 19778876 -65916878 - L1MB3 LINE L1 -16 6167 5823 261 0 0 0 chr15 19778876 19778905 -65916849 + (TG)n Simple_repeat Simple_repeat 2 30 0 3778 118 12 60 chr15 19778905 19779201 -65916553 - L1MB3 LINE L1 -360 5823 5514 2116 129 0 7 chr15 19780163 19780472 -65915282 + AluJb SINE Alu 1 307 -5 1723 160 4 0 chr15 19780474 19780743 -65915011 + AluJo SINE Alu 43 312 0 198 0 0 0 chr15 19781253 19781275 -65914479 + (CA)n Simple_repeat Simple_repeat 2 23 0 187 321 143 0 chr15 19781441 19781553 -65914201 - MIR SINE MIR -13 249 122 542 234 63 54 chr15 19781956 19782161 -65913593 - L1ME1 LINE L1 -7 6159 5953 1019 194 23 0 chr15 19782398 19782573 -65913181 + MER5A DNA MER1_type 7 185 -4 1603 217 70 44 chr15 19782759 19783059 -65912695 - L1MC5 LINE L1 -36 7925 7634 252 86 0 0 chr15 19783059 19783094 -65912660 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 1603 217 70 44 chr15 19783094 19783452 -65912302 - L1MC5 LINE L1 -327 7634 7250 523 225 35 126 chr15 19783525 19783756 -65911998 + MER63A DNA MER1_type 1 210 0 808 197 34 66 chr15 19783775 19784111 -65911643 - L1MC4 LINE L1 -733 7228 6920 795 245 21 117 chr15 19784113 19784318 -65911436 - L1MC4 LINE L1 -1003 7039 6885 4286 82 22 8 chr15 19784318 19784939 -65910815 - L1MA2 LINE L1 0 6304 5675 795 245 21 117 chr15 19784939 19785108 -65910646 - L1MC4 LINE L1 -1157 6885 6701 2129 125 7 0 chr15 19785191 19785486 -65910268 - AluSx SINE Alu -15 297 1 1235 149 104 36 chr15 19785486 19785794 -65909960 - L1MA2 LINE L1 -684 5607 5279 829 210 55 22 chr15 19786468 19786649 -65909105 + AluJo SINE Alu 92 278 -34 348 24 0 0 chr15 19786652 19786693 -65909061 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2005 116 43 6 chr15 19786959 19787286 -65908468 + MER44D DNA MER2_type 1 609 0 309 267 87 50 chr15 19787573 19787734 -65908020 - L1ME4a LINE L1 -19 6102 5936 2168 93 7 10 chr15 19787750 19788070 -65907684 - AluSq SINE Alu 0 319 1 422 227 101 47 chr15 19788086 19788240 -65907514 - L1ME4a LINE L1 -175 5946 5802 2003 130 20 3 chr15 19788240 19788541 -65907213 - AluSx SINE Alu -6 306 1 2241 111 0 0 chr15 19788542 19788840 -65906914 - AluSx SINE Alu -14 298 1 422 227 101 47 chr15 19788840 19789000 -65906754 - L1ME4a LINE L1 -318 5803 5613 320 160 296 64 chr15 19789056 19789181 -65906573 + L2 LINE L2 3160 3313 0 22 0 0 0 chr15 19789286 19789308 -65906446 + AT_rich Low_complexity Low_complexity 1 22 0 341 270 146 0 chr15 19789575 19789609 -65906145 - MER5A DNA MER1_type -29 160 132 2592 56 0 0 chr15 19789609 19789915 -65905839 + AluY SINE Alu 1 306 -5 341 270 146 0 chr15 19789915 19790017 -65905737 - MER5A DNA MER1_type -57 132 4 820 196 0 20 chr15 19790376 19790580 -65905174 - L1M1 LINE L1 -4364 3201 3002 1193 157 0 11 chr15 19790585 19790763 -65904991 - AluJo SINE Alu -131 181 6 7274 189 45 46 chr15 19790765 19791560 -65904194 - L1M1 LINE L1 -4526 3039 2245 2399 76 0 0 chr15 19791560 19791897 -65903857 + AluY SINE Alu 1 337 0 7274 189 45 46 chr15 19791897 19792663 -65903091 - L1M1 LINE L1 -5320 2245 1480 6995 56 17 17 chr15 19792663 19794278 -65901476 - SVA Other Other -723 1386 5 7274 189 45 46 chr15 19794278 19795351 -65900403 - L1M1 LINE L1 -6085 1480 16 356 175 75 12 chr15 19795468 19795548 -65900206 - MER21B LTR ERV1 -778 85 1 1668 189 14 14 chr15 19795771 19796126 -65899628 - MER4D LTR ERV1 0 903 549 1318 134 10 0 chr15 19796190 19796399 -65899355 - MER49 LTR ERV1 -663 260 50 1017 169 49 63 chr15 19796401 19796856 -65898898 - MER65-int LTR ERV1 -2111 4021 2480 368 123 12 62 chr15 19796941 19797022 -65898732 - MER65-int LTR ERV1 -2868 3730 3654 2284 114 0 3 chr15 19797114 19797412 -65898342 + AluSx SINE Alu 1 297 -15 295 243 39 10 chr15 19797413 19797516 -65898238 - MER65-int LTR ERV1 -1831 3049 2944 2313 103 0 6 chr15 19797675 19797987 -65897767 - AluY SINE Alu -1 310 1 2061 204 52 44 chr15 19798059 19798830 -65896924 - MER65-int LTR ERV1 -2378 2493 1725 1681 122 118 8 chr15 19799006 19799268 -65896486 + AluSg1 SINE Alu 1 291 -18 390 356 100 26 chr15 19799323 19799674 -65896080 + L2 LINE L2 2585 2961 -353 249 248 54 114 chr15 19799868 19799916 -65895838 + L2 LINE L2 3169 3218 -95 1999 121 10 26 chr15 19799916 19800223 -65895531 - AluSx SINE Alu -7 305 4 249 248 54 114 chr15 19800223 19800323 -65895431 + L2 LINE L2 3218 3308 -5 689 268 22 6 chr15 19800626 19800809 -65894945 - MIR SINE MIR -56 206 21 824 229 12 12 chr15 19800823 19800993 -65894761 + MER5B DNA MER1_type 7 176 -2 722 173 86 25 chr15 19801007 19801169 -65894585 + MER5B DNA MER1_type 1 172 -6 29 0 0 0 chr15 19801213 19801242 -65894512 + AT_rich Low_complexity Low_complexity 1 29 0 11404 50 1 6 chr15 19801762 19803266 -65892488 + L1P LINE L1 9 1504 -4642 6691 31 5 5 chr15 19803272 19804076 -65891678 + L1PA3 LINE L1 5352 6155 0 252 143 0 0 chr15 19804335 19804377 -65891377 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 212 273 0 0 chr15 19805023 19805067 -65890687 + L2 LINE L2 3019 3062 -251 702 167 25 0 chr15 19805181 19805301 -65890453 + FLAM_A SINE Alu 3 125 -8 414 200 0 12 chr15 19805471 19805551 -65890203 + Tigger3(Golem) DNA MER2_type 4 82 -2947 476 209 136 0 chr15 19805552 19805662 -65890092 + Tigger3(Golem) DNA MER2_type 2905 3029 0 2208 120 0 0 chr15 19806192 19806484 -65889270 - AluSx SINE Alu -20 292 1 183 80 0 0 chr15 19806581 19806606 -65889148 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1988 154 7 0 chr15 19807570 19807863 -65887891 - AluSx SINE Alu -17 295 1 2370 105 0 0 chr15 19808502 19808815 -65886939 - AluSq SINE Alu 0 313 1 873 250 241 35 chr15 19808957 19809857 -65885897 + L2 LINE L2 2200 3313 0 251 215 7 104 chr15 19811309 19811444 -65884310 + (CGGGG)n Simple_repeat Simple_repeat 3 124 0 339 244 38 0 chr15 19811690 19811821 -65883933 + G-rich Low_complexity Low_complexity 4 139 0 285 274 195 18 chr15 19812393 19812506 -65883248 + MIR SINE MIR 124 256 -6 26 0 0 0 chr15 19812720 19812746 -65883008 + AT_rich Low_complexity Low_complexity 1 26 0 2319 101 0 0 chr15 19813333 19813631 -65882123 - AluSx SINE Alu -14 298 1 324 298 67 19 chr15 19813886 19813990 -65881764 + L1MC4 LINE L1 6593 6701 -1341 189 189 19 0 chr15 19814066 19814119 -65881635 - MER5C DNA MER1_type -34 290 237 549 183 78 0 chr15 19814142 19814257 -65881497 - MER5C DNA MER1_type -200 124 1 823 197 112 5 chr15 19814467 19814655 -65881099 - MER58A DNA MER1_type -16 208 1 2437 105 0 3 chr15 19814856 19815169 -65880585 + AluSx SINE Alu 1 312 0 24 32 0 0 chr15 19816571 19816602 -65879152 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chr15 19817408 19817430 -65878324 + (T)n Simple_repeat Simple_repeat 1 22 0 1278 222 135 36 chr15 19817824 19818454 -65877300 - L1MC4 LINE L1 0 8042 7351 2084 97 76 0 chr15 19819139 19819427 -65876327 + AluSg SINE Alu 1 310 0 279 0 0 0 chr15 19820111 19820142 -65875612 + (T)n Simple_repeat Simple_repeat 1 31 0 2393 104 0 7 chr15 19822344 19822652 -65873102 - AluSx SINE Alu -6 306 1 1888 146 113 28 chr15 19822888 19823285 -65872469 + MSTB1 LTR MaLR 1 431 -1 2893 54 8 0 chr15 19823836 19824188 -65871566 + THE1A LTR MaLR 1 355 0 12106 86 13 3 chr15 19824188 19825751 -65870003 + THE1A-int LTR MaLR 1 1580 0 2444 97 41 0 chr15 19825751 19826092 -65869662 + THE1A LTR MaLR 1 355 0 500 331 75 41 chr15 19826466 19826882 -65868872 + L1ME LINE L1 5213 5661 -509 2372 87 0 3 chr15 19826882 19827180 -65868574 - AluY SINE Alu -14 297 1 500 331 75 41 chr15 19827180 19827337 -65868417 + L1ME LINE L1 5661 5811 -359 22 0 0 0 chr15 19827390 19827412 -65868342 + AT_rich Low_complexity Low_complexity 1 22 0 303 351 48 65 chr15 19828453 19828701 -65867053 + L2 LINE L2 2943 3186 -86 342 295 187 0 chr15 19828758 19828924 -65866830 + MIR SINE MIR 65 261 -1 207 247 274 0 chr15 19829579 19829652 -65866102 + MIR SINE MIR 84 176 -86 226 125 0 0 chr15 19829668 19829708 -65866046 - Alu SINE Alu -4 298 259 839 256 16 36 chr15 19829793 19830016 -65865738 + MIR SINE MIR 45 262 0 203 333 26 0 chr15 19830026 19830140 -65865614 + L2 LINE L2 1575 1691 -1623 322 336 53 48 chr15 19830257 19830674 -65865080 + L2 LINE L2 1992 2410 -904 798 163 20 20 chr15 19830839 19830986 -65864768 + MER5B DNA MER1_type 1 147 -31 240 105 53 0 chr15 19830986 19831024 -65864730 + MER57A LTR ERV1 294 333 -70 280 149 21 0 chr15 19831044 19831091 -65864663 - MER5B DNA MER1_type -129 49 2 269 282 84 64 chr15 19831100 19831302 -65864452 + L2 LINE L2 2654 2859 -455 187 327 0 0 chr15 19831329 19831381 -65864373 - L2 LINE L2 -661 2653 2602 574 178 107 71 chr15 19831392 19831463 -65864291 - MER5B DNA MER1_type -3 175 108 2341 106 0 0 chr15 19831463 19831765 -65863989 - AluSx SINE Alu -10 302 1 574 178 107 71 chr15 19831765 19831862 -65863892 - MER5B DNA MER1_type -70 108 1 202 268 71 0 chr15 19831915 19831971 -65863783 + MER5B DNA MER1_type 50 109 -69 249 256 58 47 chr15 19831974 19832060 -65863694 + L2 LINE L2 2930 3016 -256 213 67 0 0 chr15 19832221 19832251 -65863503 + L2 LINE L2 3284 3313 0 452 178 59 40 chr15 19833047 19833148 -65862606 + MER20 DNA MER1_type 117 219 0 217 139 0 0 chr15 19833827 19833863 -65861891 - MIR SINE MIR -11 251 216 212 189 0 0 chr15 19833830 19833867 -65861887 - L2 LINE L2 -20 3293 3257 * 378 310 28 7 chr15 19835600 19835745 -65860009 + MER5A DNA MER1_type 6 153 -36 268 249 141 104 chr15 19836819 19837116 -65858638 - L2 LINE L2 -18 3254 2947 1922 145 14 14 chr15 19837852 19838149 -65857605 + AluJo SINE Alu 1 297 -15 2430 105 0 3 chr15 19838151 19838465 -65857289 + AluSq SINE Alu 1 313 0 21 0 0 0 chr15 19839185 19839206 -65856548 + AT_rich Low_complexity Low_complexity 1 21 0 430 180 0 0 chr15 19840651 19840733 -65855021 + MER69 DNA AcHobo 2442 2523 -3 378 274 37 30 chr15 19841582 19841717 -65854037 + MIR SINE MIR 125 260 -2 2347 93 20 3 chr15 19841754 19842056 -65853698 - AluSq SINE Alu -6 307 1 665 211 114 63 chr15 19842566 19842803 -65852951 + MIR SINE MIR 14 262 0 330 267 89 10 chr15 19842921 19843022 -65852732 - MIR3 SINE MIR -9 199 91 2191 118 158 13 chr15 19843154 19843528 -65852226 + MSTA LTR MaLR 1 428 0 275 291 124 78 chr15 19844415 19844721 -65851033 + L2 LINE L2 2953 3272 0 1809 207 17 34 chr15 19845110 19845526 -65850228 + MER63B DNA MER1_type 19 427 -9 2386 71 3 3 chr15 19845731 19846026 -65849728 + AluSc SINE Alu 1 295 -14 296 237 35 41 chr15 19846535 19846704 -65849050 + (CACCAT)n Simple_repeat Simple_repeat 5 172 0 * 358 232 18 36 chr15 19846596 19846764 -65848990 + (CCA)n Simple_repeat Simple_repeat 1 165 0 216 0 0 0 chr15 19847887 19847911 -65847843 + (A)n Simple_repeat Simple_repeat 1 24 0 2215 91 28 3 chr15 19847932 19848219 -65847535 + AluSq SINE Alu 7 300 -13 399 313 60 25 chr15 19848315 19848683 -65847071 + L1MC4a LINE L1 4280 4660 -1486 897 259 68 29 chr15 19848783 19849105 -65846649 + L1MC4a LINE L1 4854 5162 -1133 2200 101 0 7 chr15 19849105 19849401 -65846353 + AluSg SINE Alu 5 298 -12 897 259 68 29 chr15 19849401 19849746 -65846008 + L1MC4a LINE L1 5162 5552 -743 1919 155 24 0 chr15 19849763 19850059 -65845695 + AluSx SINE Alu 1 303 -9 1302 172 96 33 chr15 19850122 19850454 -65845300 - MLT1B LTR MaLR -37 353 1 444 46 15 0 chr15 19850503 19850568 -65845186 + MER41A LTR ERV1 401 466 -88 848 249 36 68 chr15 19850587 19850844 -65844910 + L1MC4a LINE L1 5612 5855 -1953 2107 129 10 0 chr15 19850844 19851139 -65844615 - AluJo SINE Alu -14 298 1 848 249 36 68 chr15 19851139 19851246 -65844508 + L1MC4a LINE L1 5855 5964 -1844 420 309 61 93 chr15 19851600 19851878 -65843876 - L2 LINE L2 -18 3254 2986 4227 140 41 26 chr15 19851885 19853180 -65842574 - LTR12 LTR ERV1 0 1522 6 815 292 132 32 chr15 19853204 19853553 -65842201 - L2 LINE L2 -357 2957 2549 2491 82 0 0 chr15 19853553 19853856 -65841898 + AluSx SINE Alu 1 303 -9 815 292 132 32 chr15 19853856 19853969 -65841785 - L2 LINE L2 -765 2549 2449 205 290 51 72 chr15 19853977 19854115 -65841639 - MIR SINE MIR -24 238 104 235 253 114 0 chr15 19854331 19854410 -65841344 - MIR SINE MIR -84 124 37 318 363 53 29 chr15 19854499 19854670 -65841084 + L1MEd LINE L1 2 176 -5943 2028 102 33 53 chr15 19854882 19855010 -65840744 + AluSp SINE Alu 1 130 -183 180 0 0 0 chr15 19855010 19855030 -65840724 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2028 102 33 53 chr15 19855030 19855204 -65840550 + AluSp SINE Alu 130 297 -16 194 278 0 0 chr15 19855952 19855988 -65839766 + MIR SINE MIR 80 115 -147 293 319 55 0 chr15 19856501 19856592 -65839162 + L2 LINE L2 3217 3312 -1 588 238 78 121 chr15 19856865 19857286 -65838468 + L2 LINE L2 2870 3272 0 2869 3 0 0 chr15 19857606 19857907 -65837847 - AluYa5 SINE Alu -10 301 1 710 172 57 73 chr15 19858416 19858608 -65837146 + L2 LINE L2 3124 3312 -1 603 183 70 49 chr15 19858981 19859123 -65836631 - L2 LINE L2 0 3313 3169 1725 159 36 67 chr15 19859838 19860229 -65835525 + MER34B LTR ERV1 11 389 -176 432 270 140 17 chr15 19860356 19860534 -65835220 - MIR3 SINE MIR -7 201 2 405 273 14 43 chr15 19861126 19861265 -65834489 - MIR3 SINE MIR -68 140 6 426 116 12 23 chr15 19861318 19861404 -65834350 + (GGAA)n Simple_repeat Simple_repeat 2 86 0 403 317 25 12 chr15 19862108 19862127 -65833627 - MIR SINE MIR -98 164 147 189 0 0 0 chr15 19862127 19862148 -65833606 + (TTC)n Simple_repeat Simple_repeat 1 21 0 403 317 25 12 chr15 19862148 19862289 -65833465 - MIR SINE MIR -115 147 2 2237 125 0 7 chr15 19862750 19863054 -65832700 + AluSx SINE Alu 1 302 -10 896 286 29 7 chr15 19863240 19863516 -65832238 + LTR16C LTR ERVL 3 284 -207 437 172 189 8 chr15 19863535 19863615 -65832139 + MER53 DNA DNA 1 65 -124 896 213 0 6 chr15 19863615 19863779 -65831975 - FRAM SINE Alu -3 163 1 437 172 189 8 chr15 19863779 19863820 -65831934 + MER53 DNA DNA 65 144 -45 571 239 48 6 chr15 19863851 19864018 -65831736 + LTR16C LTR ERVL 316 489 -2 1544 200 29 0 chr15 19865465 19865745 -65830009 + AluJo SINE Alu 1 288 -24 3974 124 39 19 chr15 19865981 19866617 -65829137 + MER39B LTR ERV1 1 649 -4 216 196 0 20 chr15 19866772 19866823 -65828931 + G-rich Low_complexity Low_complexity 3 52 0 1831 58 0 27 chr15 19867780 19868005 -65827749 - AluSx SINE Alu -93 219 1 632 270 102 0 chr15 19868097 19868293 -65827461 - MIR SINE MIR 0 262 47 295 313 0 0 chr15 19868336 19868432 -65827322 - L1ME4a LINE L1 -210 5911 5816 256 329 121 7 chr15 19868441 19868590 -65827164 - L1ME4a LINE L1 -364 5757 5592 192 256 139 66 chr15 19869692 19869829 -65825925 + L2 LINE L2 2125 2271 -1043 393 298 147 40 chr15 19869902 19870100 -65825654 - MIR SINE MIR -30 232 14 208 300 0 0 chr15 19870360 19870410 -65825344 + L2 LINE L2 3214 3263 -9 1932 122 0 51 chr15 19870852 19871147 -65824607 + AluJo SINE Alu 1 280 -32 198 0 0 0 chr15 19871147 19871169 -65824585 + (TAAAA)n Simple_repeat Simple_repeat 1 22 0 272 296 104 35 chr15 19872156 19872386 -65823368 + L1MC5 LINE L1 7331 7576 -385 892 186 23 0 chr15 19872447 19872624 -65823130 + L1MC3 LINE L1 7236 7416 -369 * 1340 241 131 88 chr15 19872616 19873014 -65822740 + L1MEc LINE L1 220 600 -5796 1757 119 0 0 chr15 19873014 19873250 -65822504 + AluSq SINE Alu 73 308 -5 1340 241 131 88 chr15 19873250 19873462 -65822292 + L1MEc LINE L1 600 801 -5595 607 140 20 0 chr15 19873462 19873562 -65822192 + L1PA16 LINE L1 6056 6157 -9 1340 241 131 88 chr15 19873562 19873746 -65822008 + L1MEc LINE L1 801 1049 -5347 767 62 0 0 chr15 19873750 19873846 -65821908 + HY3 scRNA scRNA 5 100 -1 2193 117 17 0 chr15 19874239 19874538 -65821216 - AluY SINE Alu -7 304 1 215 250 173 58 chr15 19874614 19874718 -65821036 - MIR SINE MIR -1 261 146 1508 183 21 3 chr15 19875325 19875614 -65820140 - L1MB7 LINE L1 -10 6174 5881 290 271 47 0 chr15 19876002 19876087 -65819667 + MIR SINE MIR 98 186 -76 311 239 42 0 chr15 19876235 19876306 -65819448 + MIR SINE MIR 119 192 -70 1097 255 24 0 chr15 19876313 19876564 -65819190 - MIR SINE MIR -5 257 1 285 196 0 0 chr15 19876571 19876622 -65819132 + MIR SINE MIR 211 261 -1 214 278 56 83 chr15 19876719 19876827 -65818927 + L2 LINE L2 3168 3272 0 2329 92 0 7 chr15 19878378 19878682 -65817072 - AluSg SINE Alu -8 302 1 326 307 106 38 chr15 19880214 19880478 -65815276 + L2 LINE L2 2988 3269 -3 638 300 99 69 chr15 19880560 19881108 -65814646 + L2 LINE L2 2710 3271 -1 2198 141 0 0 chr15 19881118 19881430 -65814324 + AluJb SINE Alu 1 312 0 337 261 180 43 chr15 19881889 19882100 -65813654 + L1ME4a LINE L1 5879 6118 -3 524 198 119 2 chr15 19882994 19883140 -65812614 - MIR SINE MIR -47 161 3 466 330 6 0 chr15 19883178 19883360 -65812394 + L1ME LINE L1 5618 5800 -321 344 62 0 0 chr15 19883542 19883590 -65812164 - MADE1 DNA Mariner 0 80 33 346 123 0 0 chr15 19883591 19883648 -65812106 + L1PA15 LINE L1 5984 6040 -125 5387 55 1 1 chr15 19883648 19884308 -65811446 + L1PA5 LINE L1 5495 6154 0 841 150 0 36 chr15 19884329 19884469 -65811285 + L1PA15 LINE L1 6023 6157 -8 182 61 0 30 chr15 19884921 19884954 -65810800 + (GA)n Simple_repeat Simple_repeat 1 32 0 278 262 102 73 chr15 19885346 19885552 -65810202 + L1ME LINE L1 5694 5826 -295 423 248 51 33 chr15 19886681 19886844 -65808910 + MIR SINE MIR 51 212 -50 2623 61 0 0 chr15 19887144 19887455 -65808299 - AluY SINE Alu 0 311 1 5865 185 70 6 chr15 19888503 19888571 -65807183 + L1MB7 LINE L1 3921 3983 -2201 2032 88 0 0 chr15 19888571 19888821 -65806933 + AluSg1 SINE Alu 1 250 -59 5865 185 70 6 chr15 19888821 19890863 -65804891 + L1MB7 LINE L1 3983 6176 -8 518 278 28 56 chr15 19891104 19891284 -65804470 - MIR SINE MIR -5 257 83 557 281 83 20 chr15 19891763 19892016 -65803738 + L1MC4a LINE L1 5643 5911 -1897 21 0 0 0 chr15 19892182 19892203 -65803551 + AT_rich Low_complexity Low_complexity 1 21 0 566 311 28 0 chr15 19892480 19892657 -65803097 - MIR3 SINE MIR -7 201 20 202 182 167 61 chr15 19895732 19895798 -65799956 + L2 LINE L2 3209 3281 -32 604 302 73 0 chr15 19895835 19896027 -65799727 - MIR SINE MIR -37 225 20 250 249 165 45 chr15 19897057 19897171 -65798583 + MIR3 SINE MIR 29 161 -47 6369 82 7 1 chr15 19897372 19898027 -65797727 - L1PA14 LINE L1 0 6161 5511 212 0 36 0 chr15 19898027 19898055 -65797699 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6369 82 7 1 chr15 19898055 19898836 -65796918 - L1PA14 LINE L1 -650 5511 4706 22 88 0 0 chr15 19898844 19898901 -65796853 + AT_rich Low_complexity Low_complexity 1 57 0 2099 116 7 3 chr15 19898908 19899216 -65796538 - AluSx SINE Alu 0 309 1 319 190 0 147 chr15 19899219 19899335 -65796419 - MIR SINE MIR -50 212 114 236 214 214 0 chr15 19899683 19899767 -65795987 - MIR3 SINE MIR -16 192 91 185 94 31 0 chr15 19899775 19899807 -65795947 + GA-rich Low_complexity Low_complexity 3 35 0 2245 107 3 0 chr15 19899830 19900129 -65795625 - AluSq SINE Alu -13 300 1 2293 103 0 34 chr15 19900584 19900949 -65794805 + AluSg SINE Alu 1 354 0 188 232 18 54 chr15 19900991 19901103 -65794651 + GA-rich Low_complexity Low_complexity 3 110 0 21 0 0 0 chr15 19901193 19901214 -65794540 + AT_rich Low_complexity Low_complexity 1 21 0 5775 104 9 3 chr15 19901923 19903384 -65792370 - L1PA14 LINE L1 0 6161 4706 22 88 0 0 chr15 19903392 19903449 -65792305 + AT_rich Low_complexity Low_complexity 1 57 0 2099 116 7 3 chr15 19903456 19903764 -65791990 - AluSx SINE Alu 0 309 1 319 190 0 147 chr15 19903767 19903883 -65791871 - MIR SINE MIR -50 212 114 236 214 214 0 chr15 19904231 19904315 -65791439 - MIR3 SINE MIR -16 192 91 185 94 31 0 chr15 19904323 19904355 -65791399 + GA-rich Low_complexity Low_complexity 3 35 0 2165 117 3 0 chr15 19904379 19904678 -65791076 - AluSq SINE Alu -13 300 1 2267 104 0 35 chr15 19905133 19905451 -65790303 + AluSg SINE Alu 1 307 -3 329 250 0 10 chr15 19905518 19905622 -65790132 + GA-rich Low_complexity Low_complexity 2 104 0 333 273 8 23 chr15 19905870 19906002 -65789752 + L1ME4a LINE L1 5992 6121 0 2207 81 11 7 chr15 19906062 19906370 -65789384 + AluSq SINE Alu 1 309 0 245 283 66 28 chr15 19908077 19908183 -65787571 - MIR3 SINE MIR -96 112 3 251 299 13 13 chr15 19908290 19908367 -65787387 + L2 LINE L2 3232 3308 -5 1720 161 41 17 chr15 19909083 19909375 -65786379 - AluJo SINE Alu -13 299 1 248 254 254 0 chr15 19910675 19910793 -65784961 + MIR SINE MIR 24 171 -91 231 195 0 0 chr15 19910848 19910889 -65784865 + (CACCAT)n Simple_repeat Simple_repeat 2 42 0 2278 108 3 0 chr15 19910963 19911259 -65784495 + AluSq SINE Alu 1 297 -16 2018 113 22 92 chr15 19911305 19911675 -65784079 - LTR3b LTR ERVK 0 500 157 670 233 88 15 chr15 19911714 19911932 -65783822 - MIR SINE MIR -11 251 18 495 170 18 9 chr15 19912033 19912145 -65783609 - MER53 DNA DNA -8 181 69 * 769 129 74 49 chr15 19912143 19912306 -65783448 - MER53 DNA DNA -22 167 1 380 241 54 96 chr15 19912829 19912995 -65782759 - MIR SINE MIR -48 214 56 903 224 120 100 chr15 19913344 19913391 -65782363 - L1MC4 LINE L1 0 8042 7997 2301 81 0 0 chr15 19913391 19913689 -65782065 + AluY SINE Alu 1 298 -13 903 224 120 100 chr15 19913689 19914099 -65781655 - L1MC4 LINE L1 -45 7997 7570 484 149 0 0 chr15 19914099 19914186 -65781568 - L1PB4 LINE L1 0 6156 6070 903 224 120 100 chr15 19914186 19914286 -65781468 - L1MC4 LINE L1 -472 7570 7473 398 190 116 15 chr15 19914392 19914518 -65781236 - MIR SINE MIR -50 212 73 2102 94 31 0 chr15 19914548 19914834 -65780920 + AluSx SINE Alu 1 295 -17 189 195 0 0 chr15 19914966 19915007 -65780747 + (CA)n Simple_repeat Simple_repeat 2 42 0 1252 82 22 27 chr15 19915877 19916061 -65779693 + AluSg SINE Alu 1 183 -127 770 70 0 0 chr15 19916079 19916179 -65779575 - L1PA14 LINE L1 -3 6158 6059 234 62 0 0 chr15 19916458 19916490 -65779264 + (CA)n Simple_repeat Simple_repeat 2 33 0 290 247 14 0 chr15 19917798 19917871 -65777883 + MIR SINE MIR 77 150 -112 253 200 5 185 chr15 19919079 19919274 -65776480 + L1MC5 LINE L1 7619 7778 -183 1899 120 46 0 chr15 19919278 19919562 -65776192 + AluSx SINE Alu 2 298 -14 1594 193 33 30 chr15 19919617 19919685 -65776069 - MER58B DNA MER1_type -2087 333 267 13163 35 2 0 chr15 19919685 19922013 -65773741 - L1PA4 LINE L1 -1 6154 3825 1594 193 33 30 chr15 19922013 19922276 -65773478 - MER58B DNA MER1_type -2153 267 1 285 214 30 92 chr15 19922281 19922412 -65773342 + L1MC5 LINE L1 7809 7931 -30 537 261 137 43 chr15 19922931 19923253 -65772501 - L1ME4a LINE L1 -1 6120 5769 587 275 12 12 chr15 19923684 19923844 -65771910 + MIR SINE MIR 66 225 -37 285 191 0 63 chr15 19924336 19924462 -65771292 + G-rich Low_complexity Low_complexity 2 119 0 670 279 97 13 chr15 19925363 19925600 -65770154 + MIR SINE MIR 6 262 0 419 188 141 0 chr15 19925725 19925810 -65769944 + MER20 DNA MER1_type 1 97 -122 906 203 5 28 chr15 19925927 19926144 -65769610 - AluJo SINE Alu -17 295 84 369 293 48 104 chr15 19926180 19926332 -65769422 - L3 LINE CR1 -875 702 578 1926 141 10 0 chr15 19926332 19926637 -65769117 + AluSx SINE Alu 1 308 -4 369 293 48 104 chr15 19926637 19926819 -65768935 - L3 LINE CR1 -999 578 387 351 269 92 7 chr15 19926975 19927116 -65768638 - MER112 DNA MER1_type -6 254 102 2437 63 0 0 chr15 19927167 19927469 -65768285 + AluY SINE Alu 1 302 -9 201 231 15 62 chr15 19927843 19927908 -65767846 + L2 LINE L2 1845 1906 -1408 2139 115 3 0 chr15 19928197 19928674 -65767080 + AluSg SINE Alu 1 478 0 195 314 64 57 chr15 19928772 19928912 -65766842 + L2 LINE L2 2995 3135 -178 353 283 288 16 chr15 19929011 19929202 -65766552 - MIR SINE MIR -4 258 16 360 204 50 99 chr15 19929426 19929498 -65766256 + L1ME4a LINE L1 5535 5609 -512 2183 75 7 0 chr15 19929498 19929812 -65765942 + AluSc SINE Alu 1 316 0 360 204 50 99 chr15 19929812 19929918 -65765836 + L1ME4a LINE L1 5609 5706 -415 240 255 85 0 chr15 19930108 19930202 -65765552 + L1ME4a LINE L1 6007 6108 -13 281 385 46 6 chr15 19930233 19930407 -65765347 - L2 LINE L2 -571 2743 2563 182 280 40 40 chr15 19930927 19931027 -65764727 + L2 LINE L2 2752 2851 -463 556 275 74 37 chr15 19931268 19931457 -65764297 - MIR SINE MIR -54 208 13 2300 59 0 14 chr15 19931543 19931833 -65763921 + AluY SINE Alu 1 286 -25 1640 179 0 3 chr15 19932003 19932304 -65763450 - AluJb SINE Alu -10 302 3 2247 106 0 0 chr15 19932371 19932682 -65763072 + AluSx SINE Alu 1 311 -1 2354 133 12 31 chr15 19933888 19934303 -65761451 + L1MA5 LINE L1 5894 6300 0 22 35 0 0 chr15 19935017 19935046 -65760708 + AT_rich Low_complexity Low_complexity 1 29 0 2104 112 3 0 chr15 19935083 19935378 -65760376 - AluSx SINE Alu -8 304 9 242 343 82 8 chr15 19935813 19935947 -65759807 - L2 LINE L2 -1 3312 3169 1960 127 0 0 chr15 19935948 19936231 -65759523 + AluSx SINE Alu 1 283 -29 471 113 0 0 chr15 19936233 19936313 -65759441 + (CA)n Simple_repeat Simple_repeat 2 81 0 184 379 52 0 chr15 19937110 19937226 -65758528 + L2 LINE L2 2228 2349 -965 429 264 66 71 chr15 19937337 19937534 -65758220 + MIR SINE MIR 21 216 -46 2269 78 3 0 chr15 19937636 19937929 -65757825 + AluY SINE Alu 1 294 -17 235 317 69 28 chr15 19938087 19938232 -65757522 + L2 LINE L2 2715 2865 -449 182 348 39 83 chr15 19938276 19938480 -65757274 + L2 LINE L2 2962 3156 -116 315 85 0 0 chr15 19939005 19939052 -65756702 - AluYb8 SINE Alu -1 300 254 1728 68 0 5 chr15 19939052 19939273 -65756481 - AluYb8 SINE Alu -98 220 1 512 280 117 43 chr15 19939533 19939858 -65755896 + L2 LINE L2 2502 2850 -464 992 290 94 37 chr15 19939868 19940391 -65755363 - L2 LINE L2 0 3313 2762 272 381 44 6 chr15 19940390 19940550 -65755204 + L2 LINE L2 2888 3053 -219 * 366 232 85 0 chr15 19940579 19940661 -65755093 - L2 LINE L2 0 3313 3225 895 299 67 58 chr15 19941190 19942094 -65753660 - L2 LINE L2 0 3272 2323 1619 164 0 24 chr15 19942103 19942395 -65753359 - AluJo SINE Alu -25 287 3 397 147 52 86 chr15 19942407 19942523 -65753231 + L1ME1 LINE L1 6055 6166 0 276 281 37 12 chr15 19942526 19942608 -65753146 - Charlie8 DNA MER1_type -2331 86 3 622 359 80 3 chr15 19942609 19942971 -65752783 - L2 LINE L2 -1702 1612 1223 580 285 140 56 chr15 19942980 19943238 -65752516 - MLT1J LTR MaLR -9 502 267 1867 137 40 0 chr15 19943238 19943537 -65752217 - AluSq SINE Alu -2 311 1 580 285 140 56 chr15 19943537 19943741 -65752013 - MLT1J LTR MaLR -244 267 1 210 338 107 39 chr15 19943757 19944065 -65751689 - L2 LINE L2 -2120 1194 866 382 318 126 25 chr15 19944376 19944615 -65751139 + LTR16C LTR ERVL 98 360 -131 2423 164 15 20 chr15 19944627 19944953 -65750801 - L1MB5 LINE L1 -22 6152 5827 2181 109 0 0 chr15 19944953 19945256 -65750498 - AluSx SINE Alu -9 303 1 2423 164 15 20 chr15 19945256 19945385 -65750369 - L1MB5 LINE L1 -347 5827 5699 198 279 200 0 chr15 19945429 19945569 -65750185 - L2 LINE L2 -634 2680 2513 724 153 26 0 chr15 19945576 19945718 -65750036 + L1MB7 LINE L1 5800 5944 -222 232 262 0 33 chr15 19946318 19946379 -65749375 - MER115 DNA AcHobo -631 62 4 443 293 67 18 chr15 19946437 19946601 -65749153 - MIR SINE MIR -9 253 82 1828 151 3 3 chr15 19946637 19946941 -65748813 + AluJo SINE Alu 6 309 -3 1118 115 6 0 chr15 19948057 19948222 -65747532 + FRAM SINE Alu 1 166 -10 871 127 0 0 chr15 19948514 19948640 -65747114 + FLAM_C SINE Alu 1 126 -17 2308 86 0 0 chr15 19949091 19949394 -65746360 + AluSq SINE Alu 1 303 -10 329 259 83 9 chr15 19949499 19949607 -65746147 + MIR SINE MIR 47 162 -100 194 281 43 73 chr15 19950255 19950419 -65745335 - L2 LINE L2 -51 3262 3104 1580 151 28 7 chr15 19950483 19950767 -65744987 - AluJb SINE Alu -13 299 10 195 343 0 0 chr15 19950865 19950932 -65744822 - L2 LINE L2 -310 2962 2896 1363 231 80 10 chr15 19951355 19951741 -65744013 + L2 LINE L2 2304 2716 -598 2004 113 7 10 chr15 19951746 19952056 -65743698 + AluSq SINE Alu 1 309 -4 2340 133 87 30 chr15 19952065 19952500 -65743254 + L1MC1 LINE L1 5874 6333 0 624 265 121 67 chr15 19952504 19952964 -65742790 + L2 LINE L2 2702 3313 0 235 314 68 0 chr15 19953411 19953529 -65742225 - L1 LINE L1 -1139 5007 4882 2289 79 3 0 chr15 19953776 19954067 -65741687 + AluSc SINE Alu 1 292 -17 271 197 329 0 chr15 19954921 19954997 -65740757 - L2 LINE L2 -5 3308 3208 2148 85 0 33 chr15 19955358 19955702 -65740052 + AluSx SINE Alu 1 312 0 209 188 125 100 chr15 19956780 19956860 -65738894 + MIR SINE MIR 2 83 -179 841 164 82 0 chr15 19956895 19957041 -65738713 - AluJb SINE Alu -30 282 125 847 131 7 21 chr15 19957067 19957212 -65738542 - FLAM_C SINE Alu 0 143 1 1324 167 152 11 chr15 19957478 19957741 -65738013 - AluJb SINE Alu -2 300 1 1445 258 86 40 chr15 19958130 19958230 -65737524 - LTR33 LTR ERVL -21 500 406 845 210 124 0 chr15 19958230 19958416 -65737338 + MER3 DNA MER1_type 1 209 0 1445 258 86 40 chr15 19958416 19958768 -65736986 - LTR33 LTR ERVL -115 406 27 648 344 65 45 chr15 19962678 19963250 -65732504 - L2 LINE L2 -1366 1948 1366 468 195 110 8 chr15 19963631 19963749 -65732005 + MIR SINE MIR 119 248 -14 1798 146 41 20 chr15 19964164 19964458 -65731296 + AluJb SINE Alu 1 300 -12 405 266 92 9 chr15 19964961 19965070 -65730684 - L2 LINE L2 -19 3253 3136 317 271 68 60 chr15 19965193 19965326 -65730428 - MIR SINE MIR -109 153 20 29 47 0 0 chr15 19965327 19965370 -65730384 + AT_rich Low_complexity Low_complexity 1 43 0 2176 115 7 0 chr15 19965370 19965657 -65730097 + AluSx SINE Alu 1 289 -23 279 0 0 0 chr15 19965658 19965689 -65730065 + (TA)n Simple_repeat Simple_repeat 1 31 0 2067 122 7 3 chr15 19966277 19966571 -65729183 + AluSx SINE Alu 1 295 -17 1790 175 0 10 chr15 19967065 19967368 -65728386 - AluJo SINE Alu -11 301 2 2469 63 0 25 chr15 19968011 19968326 -65727428 + AluY SINE Alu 1 307 -4 250 371 161 0 chr15 19968935 19969059 -65726695 - L2 LINE L2 -27 3245 3102 537 245 122 32 chr15 19969531 19969719 -65726035 - MIR SINE MIR -57 205 1 353 225 37 126 chr15 19970286 19970477 -65725277 + LTR67 LTR ERVL 301 474 -83 858 192 40 0 chr15 19971668 19971819 -65723935 - FRAM SINE Alu -6 160 4 532 200 156 11 chr15 19972514 19972694 -65723060 + L1ME4a LINE L1 5738 5943 -178 756 154 0 0 chr15 19972696 19972806 -65722948 + AluJb SINE Alu 2 111 -201 445 121 76 0 chr15 19972828 19972894 -65722860 + AluJ/FRAM SINE Alu 218 288 -24 253 146 146 48 chr15 19972944 19972974 -65722780 + L1ME4a LINE L1 5999 6025 -96 2129 114 7 0 chr15 19972974 19973272 -65722482 - AluSx SINE Alu -8 304 5 253 146 146 48 chr15 19973272 19973344 -65722410 + L1ME4a LINE L1 6025 6111 -10 180 0 0 0 chr15 19973584 19973604 -65722150 + (A)n Simple_repeat Simple_repeat 1 20 0 1810 160 7 3 chr15 19973604 19973898 -65721856 + AluJo SINE Alu 1 295 -17 22 0 0 0 chr15 19973944 19973966 -65721788 + AT_rich Low_complexity Low_complexity 1 22 0 889 277 113 37 chr15 19974448 19974935 -65720819 + L2 LINE L2 2773 3293 -20 474 256 210 16 chr15 19975265 19975574 -65720180 + L1ME4a LINE L1 5580 5948 -173 2234 120 10 0 chr15 19975664 19975964 -65719790 + AluSq SINE Alu 1 303 -10 984 183 174 99 chr15 19976052 19976210 -65719544 + L1MC5 LINE L1 7153 7298 -663 2324 97 0 3 chr15 19976210 19976510 -65719244 + AluY SINE Alu 1 299 -12 984 183 174 99 chr15 19976510 19976816 -65718938 + L1MC5 LINE L1 7298 7652 -309 25 143 0 0 chr15 19977727 19977769 -65717985 + AT_rich Low_complexity Low_complexity 1 42 0 2176 115 7 0 chr15 19977769 19978056 -65717698 + AluSx SINE Alu 1 289 -23 279 0 0 0 chr15 19978057 19978088 -65717666 + (TA)n Simple_repeat Simple_repeat 1 31 0 2077 122 7 3 chr15 19978676 19978971 -65716783 + AluSx SINE Alu 1 296 -16 660 177 57 28 chr15 19979439 19979580 -65716174 - MER105 DNA DNA -59 145 1 1279 108 54 0 chr15 19979617 19979802 -65715952 - MER20 DNA MER1_type -24 195 1 250 261 182 0 chr15 19980026 19980114 -65715640 + L2 LINE L2 3149 3252 -20 294 293 0 13 chr15 19981494 19981569 -65714185 + MIR SINE MIR 28 101 -161 381 264 208 0 chr15 19982548 19982654 -65713100 + L2 LINE L2 3185 3312 -1 476 252 207 14 chr15 19982795 19983017 -65712737 - L2 LINE L2 -18 3295 3031 1938 87 17 45 chr15 19983426 19983713 -65712041 - AluY SINE Alu -32 279 1 1174 133 0 0 chr15 19984496 19984661 -65711093 + AluSp SINE Alu 137 301 -12 608 195 31 23 chr15 19984750 19984878 -65710876 - MER5B DNA MER1_type -49 129 1 205 239 0 22 chr15 19985377 19985423 -65710331 + L2 LINE L2 3215 3259 -13 486 180 40 0 chr15 19985739 19985839 -65709915 + MER21B LTR ERV1 749 852 -11 305 261 85 31 chr15 19985988 19986118 -65709636 + L1ME4a LINE L1 5768 5904 -217 318 132 19 0 chr15 19986288 19986341 -65709413 + L1M4 LINE L1 3995 4048 -2098 866 166 77 33 chr15 19986369 19986550 -65709204 + AluJo SINE Alu 1 189 -123 1679 157 21 7 chr15 19988169 19988456 -65707298 + AluSg SINE Alu 1 291 -19 23 0 0 0 chr15 19988566 19988589 -65707165 + AT_rich Low_complexity Low_complexity 1 23 0 2463 59 0 16 chr15 19989421 19989726 -65706028 + AluY SINE Alu 1 300 -11 282 204 0 0 chr15 19991787 19991836 -65703918 + MER103 DNA DNA 73 121 -45 436 275 198 24 chr15 19991951 19992066 -65703688 - MIR SINE MIR 0 262 168 2044 99 39 3 chr15 19992066 19992350 -65703404 - AluSp SINE Alu -19 294 1 436 275 198 24 chr15 19992350 19992441 -65703313 - MIR SINE MIR -94 168 20 1782 121 83 31 chr15 19993696 19993986 -65701768 + AluSx SINE Alu 1 305 -7 234 255 10 29 chr15 19994063 19994165 -65701589 + GA-rich Low_complexity Low_complexity 3 102 0 451 288 32 16 chr15 19994248 19994373 -65701381 - MIR SINE MIR -62 146 20 387 186 108 29 chr15 19994449 19994551 -65701203 + MER103 DNA DNA 36 145 -21 707 170 47 0 chr15 19994556 19994662 -65701092 + FLAM_A SINE Alu 6 116 -26 28 29 0 0 chr15 19994663 19994698 -65701056 + AT_rich Low_complexity Low_complexity 1 35 0 192 305 34 0 chr15 19995079 19995138 -65700616 - MIR3 SINE MIR -133 75 15 211 330 47 28 chr15 19996316 19996422 -65699332 + L2 LINE L2 2554 2661 -653 212 368 0 0 chr15 19996896 19996964 -65698790 + L3 LINE CR1 705 772 -805 234 294 106 78 chr15 19997251 19997314 -65698440 + L3b LINE CR1 1108 1168 -415 2895 3 0 3 chr15 19997314 19997626 -65698128 + AluYa5 SINE Alu 1 311 0 234 294 106 78 chr15 19997626 19997780 -65697974 + L3b LINE CR1 1168 1331 -252 27 65 0 0 chr15 20000050 20000081 -65695673 + GC_rich Low_complexity Low_complexity 1 31 0 247 278 146 35 chr15 20000356 20000500 -65695254 + MIR SINE MIR 32 191 -71 429 250 184 7 chr15 20000529 20000681 -65695073 + MIR SINE MIR 23 201 -61 242 164 18 36 chr15 20000794 20000849 -65694905 - L2 LINE L2 0 3272 3219 32 0 0 0 chr15 20001638 20001670 -65694084 + GC_rich Low_complexity Low_complexity 1 32 0 510 298 121 28 chr15 20002241 20002523 -65693231 + L2 LINE L2 3005 3312 -1 23 33 0 0 chr15 20002690 20002720 -65693034 + AT_rich Low_complexity Low_complexity 1 30 0 749 189 163 11 chr15 20002973 20003163 -65692591 - MIR SINE MIR -16 246 28 2537 52 0 13 chr15 20003166 20003474 -65692280 - AluY SINE Alu -6 305 2 276 282 0 39 chr15 20003678 20003781 -65691973 + L2 LINE L2 3180 3278 -35 2983 135 121 34 chr15 20003781 20003850 -65691904 + L1MB3 LINE L1 5539 5601 -582 1643 189 10 20 chr15 20003850 20004147 -65691607 + AluJo SINE Alu 1 294 -18 2983 135 121 34 chr15 20004147 20004437 -65691317 + L1MB3 LINE L1 5601 5864 -319 2214 107 0 0 chr15 20004437 20004726 -65691028 - AluSx SINE Alu -23 289 1 2983 135 121 34 chr15 20004726 20004951 -65690803 + L1MB3 LINE L1 5864 6175 -8 1968 139 40 3 chr15 20006864 20007165 -65688589 + AluSx SINE Alu 1 312 0 349 270 38 8 chr15 20008253 20008454 -65687300 - MIR SINE MIR 0 262 1 313 293 60 20 chr15 20008684 20008834 -65686920 + L1MB8 LINE L1 5980 6135 -43 543 269 28 33 chr15 20009205 20009387 -65686367 + L1MB7 LINE L1 5986 6166 0 2404 69 7 7 chr15 20009396 20009700 -65686054 + AluY SINE Alu 1 304 -7 382 295 95 29 chr15 20010559 20010769 -65684985 + L1ME3A LINE L1 5597 5820 -301 180 316 53 0 chr15 20010937 20010994 -65684760 + L3 LINE CR1 1509 1568 -9 898 143 0 0 chr15 20011017 20011143 -65684611 - FLAM_C SINE Alu -17 126 1 1860 226 63 95 chr15 20011427 20011491 -65684263 - L1MC4 LINE L1 -1 8041 7976 2083 118 17 0 chr15 20011491 20011788 -65683966 + AluJo SINE Alu 1 302 -10 1860 226 63 95 chr15 20011788 20011978 -65683776 - L1MC4 LINE L1 -66 7976 7781 1817 150 40 0 chr15 20011978 20012278 -65683476 + AluJo SINE Alu 1 312 0 1860 226 63 95 chr15 20012278 20012852 -65682902 - L1MC4 LINE L1 -261 7781 7239 35 0 0 0 chr15 20013003 20013038 -65682716 + AT_rich Low_complexity Low_complexity 1 35 0 1836 136 16 48 chr15 20013839 20014148 -65681606 - AluSx SINE Alu -13 299 1 544 269 185 41 chr15 20014217 20014585 -65681169 - L2 LINE L2 0 3313 2893 565 363 113 16 chr15 20014693 20015250 -65680504 - L2 LINE L2 -483 2831 2221 297 0 0 0 chr15 20016384 20016417 -65679337 + (TA)n Simple_repeat Simple_repeat 2 34 0 204 40 0 0 chr15 20016417 20016442 -65679312 + (T)n Simple_repeat Simple_repeat 1 25 0 2363 108 0 0 chr15 20016481 20016788 -65678966 + AluSx SINE Alu 1 307 -5 221 264 36 129 chr15 20017454 20017495 -65678259 - MER5B DNA MER1_type -3 175 132 2174 128 10 0 chr15 20017495 20017800 -65677954 - AluSx SINE Alu -4 308 1 221 264 36 129 chr15 20017800 20017886 -65677868 - MER5B DNA MER1_type -46 132 59 1880 149 3 10 chr15 20017886 20018188 -65677566 - AluJb SINE Alu -11 301 2 221 264 36 129 chr15 20018188 20018199 -65677555 - MER5B DNA MER1_type -119 59 49 1033 189 70 48 chr15 20018959 20019229 -65676525 + L1ME3A LINE L1 5895 6170 0 234 305 78 19 chr15 20019273 20019427 -65676327 - L1 LINE L1 -1796 4350 4188 483 176 22 0 chr15 20019428 20019519 -65676235 - FLAM_A SINE Alu -9 133 41 622 253 192 32 chr15 20019530 20019726 -65676028 - L1 LINE L1 -2187 3959 3796 1761 157 34 115 chr15 20019726 20020134 -65675620 - THE1C LTR MaLR 0 375 1 622 253 192 32 chr15 20020134 20020443 -65675311 - L1 LINE L1 -2350 3796 3373 2246 114 10 0 chr15 20020539 20020846 -65674908 - AluSx SINE Alu -2 310 1 880 156 6 220 chr15 20020873 20021232 -65674522 - AluJo SINE Alu -30 282 1 1751 169 0 24 chr15 20021237 20021533 -65674221 - AluJo SINE Alu -18 294 6 1453 169 0 0 chr15 20021533 20021758 -65673996 - 7SLRNA srpRNA srpRNA -92 228 4 33 0 0 0 chr15 20021771 20021804 -65673950 + AT_rich Low_complexity Low_complexity 1 33 0 2039 143 0 13 chr15 20021806 20022106 -65673648 + AluSx SINE Alu 1 296 -16 405 0 0 0 chr15 20022113 20022158 -65673596 + (CA)n Simple_repeat Simple_repeat 2 46 0 316 278 31 10 chr15 20022308 20022405 -65673349 - L1 LINE L1 -3148 2998 2900 234 281 21 10 chr15 20022419 20022515 -65673239 - L1 LINE L1 -3329 2817 2721 2176 108 0 3 chr15 20022517 20022836 -65672918 - AluSx SINE Alu 0 312 1 256 262 33 16 chr15 20022836 20022902 -65672852 - L1 LINE L1 -3769 2377 2312 991 193 41 78 chr15 20022902 20023243 -65672511 - L1ME1 LINE L1 -164 6002 2254 1768 80 0 4 chr15 20023250 20023476 -65672278 - AluSc SINE Alu -14 295 71 3391 34 0 0 chr15 20023486 20023865 -65671889 - L1PA4 LINE L1 -3 6152 5774 443 119 0 0 chr15 20023880 20023939 -65671815 - AluSc SINE Alu -224 85 27 1094 204 168 8 chr15 20023940 20024121 -65671633 - L1M3 LINE L1 -730 5441 5290 2140 114 3 3 chr15 20024121 20024418 -65671336 - AluY SINE Alu -12 299 3 1094 204 168 8 chr15 20024418 20024617 -65671137 - L1M3 LINE L1 -881 5290 4999 2184 129 111 3 chr15 20024617 20025003 -65670751 + MSTA LTR MaLR 1 428 0 839 283 105 71 chr15 20026588 20027140 -65668614 - MLT1K LTR MaLR -16 572 2 271 242 11 84 chr15 20027833 20027928 -65667826 - MIR3 SINE MIR -34 174 87 1552 140 0 5 chr15 20028133 20028355 -65667399 - AluSg/x SINE Alu -20 290 70 760 172 8 15 chr15 20028681 20028815 -65666939 + FLAM_A SINE Alu 1 133 0 237 319 28 0 chr15 20028864 20028936 -65666818 - Charlie8 DNA MER1_type 0 2417 2344 458 263 119 27 chr15 20029213 20029506 -65666248 - L1MC5 LINE L1 -102 7859 7540 1688 146 86 4 chr15 20029793 20030061 -65665693 - AluJo SINE Alu -22 290 1 331 215 89 0 chr15 20030248 20030327 -65665427 - L1ME3A LINE L1 -321 5849 5764 1374 166 5 9 chr15 20030800 20031054 -65664700 - AluJo SINE Alu 0 313 61 1995 128 0 7 chr15 20031061 20031349 -65664405 + AluSq SINE Alu 13 298 -15 2084 95 3 57 chr15 20032428 20032743 -65663011 + AluSg SINE Alu 1 298 -12 578 229 115 13 chr15 20033055 20033212 -65662542 + MER5B DNA MER1_type 1 173 -5 388 311 115 75 chr15 20033498 20033871 -65661883 - L2 LINE L2 -6 3266 2879 208 289 157 12 chr15 20035056 20035139 -65660615 - MIR3 SINE MIR -8 200 106 332 276 86 0 chr15 20035259 20035364 -65660390 + MIR SINE MIR 33 146 -62 389 238 0 12 chr15 20035922 20036006 -65659748 - L2 LINE L2 -1 3312 3230 1279 174 30 30 chr15 20036209 20036514 -65659240 + AluSq SINE Alu 1 305 -8 222 224 0 0 chr15 20037429 20037478 -65658276 + L3 LINE CR1 1527 1575 -2 217 156 0 89 chr15 20037656 20037701 -65658053 + L2 LINE L2 3251 3291 -22 1803 166 3 10 chr15 20038393 20038695 -65657059 + AluJb SINE Alu 1 300 -12 2120 98 0 0 chr15 20038705 20038982 -65656772 + AluY SINE Alu 2 278 -33 324 0 0 0 chr15 20038982 20039018 -65656736 + (CA)n Simple_repeat Simple_repeat 1 36 0 2401 68 0 0 chr15 20039020 20039316 -65656438 + AluY SINE Alu 1 296 -15 390 259 46 96 chr15 20039580 20039777 -65655977 - L3b LINE CR1 -87 1496 1310 1473 156 28 16 chr15 20040107 20040357 -65655397 - AluSp SINE Alu -12 301 49 219 224 86 0 chr15 20040508 20040566 -65655188 + L2 LINE L2 3249 3311 -2 1874 129 64 0 chr15 20040600 20040880 -65654874 + AluSx SINE Alu 1 298 -14 2496 104 6 3 chr15 20041052 20041399 -65654355 + L1MB3 LINE L1 5835 6182 -1 22 70 0 0 chr15 20041592 20041635 -65654119 + AT_rich Low_complexity Low_complexity 1 43 0 2066 219 45 54 chr15 20041655 20042280 -65653474 + L1MC4 LINE L1 7183 7801 -241 1402 102 30 5 chr15 20042714 20042911 -65652843 + L1PA15 LINE L1 5957 6158 -7 180 273 0 0 chr15 20043452 20043496 -65652258 - MIR SINE MIR -4 258 215 * 1326 246 17 0 chr15 20043490 20043783 -65651971 + L2 LINE L2 2160 2457 -857 448 184 98 43 chr15 20043901 20044022 -65651732 - L1MC5 LINE L1 -133 7828 7694 2207 126 0 3 chr15 20044022 20044331 -65651423 + AluSx SINE Alu 1 308 -4 448 184 98 43 chr15 20044331 20044372 -65651382 - L1MC5 LINE L1 -267 7694 7657 754 176 78 14 chr15 20044379 20044521 -65651233 + AluJb SINE Alu 137 287 -25 2925 190 57 39 chr15 20044633 20044688 -65651066 - L1ME2 LINE L1 -1 6163 6110 1751 148 7 52 chr15 20044688 20044998 -65650756 - AluJo SINE Alu -16 296 1 2925 190 57 39 chr15 20044998 20045530 -65650224 - L1ME2 LINE L1 -54 6110 5560 1785 156 3 23 chr15 20045530 20045838 -65649916 + AluJo SINE Alu 9 310 -2 2925 190 57 39 chr15 20045838 20045919 -65649835 - L1ME2 LINE L1 -604 5560 5482 2088 105 20 16 chr15 20045937 20046242 -65649512 - AluY SINE Alu -5 306 1 1934 150 10 0 chr15 20046243 20046536 -65649218 - AluSx SINE Alu -16 296 1 791 205 24 101 chr15 20046545 20046833 -65648921 - L1ME2 LINE L1 0 6164 5899 1851 143 11 0 chr15 20046859 20047169 -65648585 + AluSx SINE Alu 1 313 0 1042 167 0 0 chr15 20047169 20047325 -65648429 + AluJb SINE Alu 137 292 -20 594 225 133 67 chr15 20047423 20047663 -65648091 + Charlie8 DNA MER1_type 9 264 -2153 270 234 13 52 chr15 20047733 20047810 -65647944 + Charlie8 DNA MER1_type 2343 2416 -1 201 317 0 0 chr15 20047996 20048037 -65647717 - L2 LINE L2 -98 3174 3134 304 230 0 27 chr15 20048339 20048413 -65647341 - AluSc SINE Alu -10 289 218 316 217 33 11 chr15 20048545 20048637 -65647117 + LTR16B LTR ERVL 271 364 -100 1155 168 51 5 chr15 20048663 20048877 -65646877 - MER2 DNA MER2_type -1 344 121 754 147 7 63 chr15 20048877 20049020 -65646734 + AluJo SINE Alu 2 136 -176 866 199 6 32 chr15 20049029 20049185 -65646569 - FRAM SINE Alu -24 152 1 674 258 46 16 chr15 20049215 20049409 -65646345 - MIR SINE MIR -36 226 27 2206 108 3 16 chr15 20049611 20049926 -65645828 + AluSx SINE Alu 1 311 -1 1543 139 111 84 chr15 20051668 20052009 -65643745 + MER51A LTR ERV1 1 569 -65 2385 94 0 0 chr15 20052009 20052308 -65643446 - AluSx SINE Alu -13 299 1 1543 139 111 84 chr15 20052308 20052376 -65643378 + MER51A LTR ERV1 569 634 0 26 64 0 0 chr15 20052452 20052499 -65643255 + AT_rich Low_complexity Low_complexity 1 47 0 1674 166 40 3 chr15 20052584 20052885 -65642869 - AluJb SINE Alu 0 312 1 1992 131 3 39 chr15 20052950 20053256 -65642498 + AluSg SINE Alu 1 295 -15 405 170 64 0 chr15 20053349 20053443 -65642311 - HAL1 LINE L1 -90 2417 2318 1691 170 17 30 chr15 20053443 20053743 -65642011 - AluJo SINE Alu -16 296 1 3131 205 147 27 chr15 20053765 20054359 -65641395 - HAL1 LINE L1 -307 2200 1678 858 154 0 22 chr15 20054359 20054522 -65641232 + FLAM_C SINE Alu 1 133 0 3131 205 147 27 chr15 20054522 20054888 -65640866 - HAL1 LINE L1 -829 1678 1125 831 193 58 40 chr15 20054901 20055124 -65640630 - L1MB8 LINE L1 -6 6172 5946 208 289 157 12 chr15 20056589 20056672 -65639082 - MIR3 SINE MIR -8 200 106 332 276 86 0 chr15 20056792 20056897 -65638857 + MIR SINE MIR 33 146 -62 422 226 0 12 chr15 20057455 20057539 -65638215 - L2 LINE L2 -1 3312 3230 2455 85 0 3 chr15 20057742 20058049 -65637705 + AluY SINE Alu 1 306 -5 1016 208 30 10 chr15 20058409 20058606 -65637148 + MER58A DNA MER1_type 24 224 0 21 0 0 0 chr15 20058681 20058702 -65637052 + AT_rich Low_complexity Low_complexity 1 21 0 1736 161 0 11 chr15 20060190 20060470 -65635284 + AluJb SINE Alu 12 288 -24 575 254 96 32 chr15 20062004 20062224 -65633530 - L3b LINE CR1 -136 1447 1214 216 301 105 35 chr15 20062854 20062997 -65632757 - L3 LINE CR1 -437 1140 988 234 235 49 62 chr15 20064820 20064901 -65630853 + MIR SINE MIR 104 183 -79 471 262 157 26 chr15 20066178 20066369 -65629385 + MIR SINE MIR 41 256 -6 182 270 90 60 chr15 20066493 20066593 -65629161 + L2 LINE L2 3150 3252 -20 2046 122 7 7 chr15 20066696 20066991 -65628763 - AluSx SINE Alu -17 295 1 1302 101 0 6 chr15 20067183 20067361 -65628393 - AluSq SINE Alu -5 308 132 278 167 128 90 chr15 20069018 20069096 -65626658 + MIR SINE MIR 30 109 -99 2189 133 0 0 chr15 20069881 20070189 -65625565 + AluSx SINE Alu 1 308 -4 2040 133 0 25 chr15 20070199 20070516 -65625238 + AluSx SINE Alu 1 309 -3 2684 134 40 113 chr15 20070867 20070929 -65624825 + L1MD3 LINE L1 7388 7453 -542 1868 137 7 14 chr15 20070929 20071213 -65624541 + AluSx SINE Alu 9 290 -22 2684 134 40 113 chr15 20071213 20071352 -65624402 + L1MD3 LINE L1 7453 7601 -394 1549 146 16 84 chr15 20071352 20071660 -65624094 - AluJo SINE Alu -21 291 5 2684 134 40 113 chr15 20071660 20072113 -65623641 + L1MD3 LINE L1 7601 7995 0 393 214 77 17 chr15 20074212 20074329 -65621425 + L1ME2 LINE L1 6007 6130 -34 1732 188 3 3 chr15 20074695 20074998 -65620756 + AluJb SINE Alu 1 303 -9 602 291 20 31 chr15 20075062 20075258 -65620496 + MER117 DNA MER1_type 1 194 -3 1998 131 7 7 chr15 20075359 20075656 -65620098 + AluSx SINE Alu 1 297 -15 281 328 70 35 chr15 20075736 20076020 -65619734 + L2 LINE L2 1979 2272 -1042 453 289 74 65 chr15 20076057 20076424 -65619330 + L2 LINE L2 322 691 -2623 580 204 61 8 chr15 20076438 20076570 -65619184 + MIR SINE MIR 123 261 -1 553 165 43 35 chr15 20076645 20076760 -65618994 + MER103 DNA DNA 7 122 -44 2337 148 39 58 chr15 20076775 20077209 -65618545 + MSTC LTR MaLR 1 426 -2 1859 154 10 0 chr15 20077330 20077622 -65618132 + AluJb SINE Alu 7 301 -11 2194 50 0 0 chr15 20077807 20078068 -65617686 + AluY SINE Alu 41 301 -10 2219 117 13 0 chr15 20078145 20078453 -65617301 + AluSx SINE Alu 1 312 0 2078 103 10 32 chr15 20078715 20079025 -65616729 + AluSg SINE Alu 2 304 -6 200 311 122 28 chr15 20079377 20079557 -65616197 - MIR SINE MIR -46 216 20 1731 196 0 3 chr15 20079657 20079969 -65615785 + AluJb SINE Alu 1 311 -1 196 302 0 0 chr15 20080884 20080937 -65614817 - L2 LINE L2 -7 3306 3254 228 143 0 0 chr15 20082389 20082431 -65613323 - L1MB4 LINE L1 -1 6179 6138 2628 204 67 19 chr15 20082625 20083279 -65612475 - Tigger7 DNA MER2_type -8 2579 1 859 164 0 0 chr15 20083400 20083528 -65612226 - FLAM_C SINE Alu -5 128 1 237 159 0 0 chr15 20084702 20084746 -65611008 + (TG)n Simple_repeat Simple_repeat 2 45 0 488 242 91 50 chr15 20085611 20085809 -65609945 + L3 LINE CR1 974 1179 -398 1739 154 148 22 chr15 20086462 20086786 -65608968 + MLT1A1 LTR MaLR 1 365 0 2119 115 0 22 chr15 20086962 20087276 -65608478 + AluSx SINE Alu 1 307 -5 1790 149 3 23 chr15 20087678 20087980 -65607774 - AluSx SINE Alu -16 296 1 1640 152 72 0 chr15 20087980 20088256 -65607498 - AluJb SINE Alu -16 296 1 180 0 0 0 chr15 20088447 20088467 -65607287 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1596 180 7 27 chr15 20088471 20088765 -65606989 - AluJb SINE Alu -24 288 1 1493 197 34 24 chr15 20088864 20089159 -65606595 + AluJo SINE Alu 1 298 -14 1488 175 67 4 chr15 20089339 20089608 -65606146 + AluJo SINE Alu 5 290 -22 1200 169 69 159 chr15 20089798 20090231 -65605523 - MSTD LTR MaLR -2 394 1 1772 185 62 67 chr15 20090588 20091155 -65604599 + L1MC5 LINE L1 7348 7911 -50 1899 148 10 3 chr15 20091241 20091538 -65604216 + AluJb SINE Alu 2 300 -12 444 264 96 1 chr15 20092117 20092265 -65603489 + Charlie8 DNA MER1_type 115 248 -1180 2105 51 0 16 chr15 20092265 20092521 -65603233 + AluY SINE Alu 52 303 -8 444 264 96 1 chr15 20092521 20092554 -65603200 + Charlie8 DNA MER1_type 248 1411 -17 1961 166 0 3 chr15 20092594 20092902 -65602852 + AluJb SINE Alu 5 311 -1 1463 143 16 12 chr15 20093730 20093982 -65601772 - AluSx SINE Alu -5 307 55 352 141 0 16 chr15 20093992 20094066 -65601688 - Alu SINE Alu -1 301 244 2415 72 0 3 chr15 20094067 20094371 -65601383 - AluY SINE Alu -8 303 1 487 193 53 0 chr15 20094610 20094724 -65601030 - AluY SINE Alu -189 122 3 1998 158 0 7 chr15 20094842 20095140 -65600614 - AluSx SINE Alu -16 296 1 2496 91 0 0 chr15 20095157 20095466 -65600288 - AluSx SINE Alu -3 309 1 32 81 0 0 chr15 20095573 20095647 -65600107 + AT_rich Low_complexity Low_complexity 1 74 0 1896 156 3 13 chr15 20095750 20096065 -65599689 + AluJb SINE Alu 1 312 0 329 284 96 50 chr15 20096527 20096809 -65598945 + L2 LINE L2 1812 2106 -1208 361 350 55 27 chr15 20096842 20097025 -65598729 + MIR SINE MIR 20 207 -55 217 302 48 0 chr15 20097252 20097315 -65598439 + L2 LINE L2 2692 2757 -557 210 208 0 21 chr15 20098489 20098537 -65597217 + CT-rich Low_complexity Low_complexity 2 48 0 258 105 0 0 chr15 20098835 20098873 -65596881 + (A)n Simple_repeat Simple_repeat 1 38 0 203 206 0 48 chr15 20099429 20099492 -65596262 + CT-rich Low_complexity Low_complexity 2 61 0 989 179 0 0 chr15 20099560 20099716 -65596038 - AluSg/x SINE Alu -23 287 132 5710 32 3 0 chr15 20099860 20100489 -65595265 - L1PA3 LINE L1 0 6155 5525 1122 214 71 4 chr15 20100525 20100805 -65594949 + AluSq SINE Alu 1 299 -4 1234 143 0 5 chr15 20101519 20101735 -65594019 + AluY SINE Alu 92 306 -5 379 222 37 0 chr15 20101920 20102009 -65593745 + MIR SINE MIR 19 109 -126 491 149 0 0 chr15 20102099 20102166 -65593588 - AluS SINE Alu -17 294 228 1528 97 0 0 chr15 20102166 20102361 -65593393 - AluSq SINE Alu -118 195 1 251 308 0 13 chr15 20102365 20102443 -65593311 + MER94 DNA DNA 32 108 -26 659 133 10 0 chr15 20102443 20102541 -65593213 + AluSc SINE Alu 2 100 -209 1507 172 7 26 chr15 20103171 20103479 -65592275 - AluY SINE Alu -9 302 1 1809 160 26 16 chr15 20103802 20104108 -65591646 - AluJb SINE Alu -3 309 1 2200 130 0 0 chr15 20104239 20104539 -65591215 - AluSx SINE Alu -12 300 1 5500 44 3 2 chr15 20104576 20105206 -65590548 + L1PA3 LINE L1 5525 6155 0 900 205 0 0 chr15 20105349 20105505 -65590249 + AluSg/x SINE Alu 132 287 -23 2643 46 0 0 chr15 20105892 20106198 -65589556 + AluY SINE Alu 1 306 -5 379 161 32 0 chr15 20106383 20106445 -65589309 + MIR SINE MIR 19 82 -126 1672 118 122 11 chr15 20106561 20106824 -65588930 - AluSg1 SINE Alu -17 292 1 285 244 0 122 chr15 20106828 20106905 -65588849 + MER94 DNA DNA 32 92 -42 2142 93 3 14 chr15 20106905 20107195 -65588559 + AluSc SINE Alu 1 287 -22 285 244 0 122 chr15 20107195 20107232 -65588522 + MER94 DNA DNA 92 132 -2 2242 106 3 0 chr15 20107351 20107644 -65588110 - AluSp SINE Alu -19 294 1 1986 135 10 3 chr15 20107714 20108011 -65587743 - AluSx SINE Alu -13 299 1 2058 122 10 10 chr15 20108420 20108715 -65587039 + AluSx SINE Alu 1 295 -17 24 100 0 0 chr15 20110274 20110354 -65585400 + AT_rich Low_complexity Low_complexity 1 80 0 1715 82 0 9 chr15 20110463 20110683 -65585071 + AluSg/x SINE Alu 93 310 0 1998 150 0 0 chr15 20110718 20111033 -65584721 + AluSx SINE Alu 1 315 0 1133 204 4 113 chr15 20111042 20111131 -65584623 + L1ME1 LINE L1 5390 5487 -679 2172 104 3 23 chr15 20111131 20111430 -65584324 + AluSx SINE Alu 1 293 -19 1133 204 4 113 chr15 20111430 20111478 -65584276 + L1ME1 LINE L1 5487 5539 -627 1809 159 3 19 chr15 20111478 20111786 -65583968 + AluJo SINE Alu 1 303 -9 1133 204 4 113 chr15 20111786 20112025 -65583729 + L1ME1 LINE L1 5539 5716 -450 2003 141 3 0 chr15 20112037 20112327 -65583427 + AluSx SINE Alu 1 291 -21 744 207 56 19 chr15 20112426 20112639 -65583115 + L1ME1 LINE L1 5707 5927 -239 1239 179 5 14 chr15 20112639 20112862 -65582892 - AluJo SINE Alu -5 307 87 931 221 21 55 chr15 20112872 20113107 -65582647 + L1ME1 LINE L1 5933 6159 -7 1664 184 7 0 chr15 20113234 20113538 -65582216 - AluJo SINE Alu 0 308 3 481 252 91 69 chr15 20113689 20113722 -65582032 + L1ME4a LINE L1 5521 5552 -569 1505 170 85 18 chr15 20113722 20114005 -65581749 + AluJb SINE Alu 1 302 -10 481 252 91 69 chr15 20114005 20114200 -65581554 + L1ME4a LINE L1 5552 5760 -361 1899 150 17 10 chr15 20114200 20114500 -65581254 - AluJb SINE Alu -10 302 1 481 252 91 69 chr15 20114500 20114588 -65581166 + L1ME4a LINE L1 5760 5845 -276 2165 109 7 3 chr15 20114656 20114950 -65580804 - AluSx SINE Alu -17 295 1 962 202 103 24 chr15 20115832 20116084 -65579670 + AluJb SINE Alu 31 302 -10 439 268 84 53 chr15 20116084 20116279 -65579475 + L1ME4a LINE L1 5553 5761 -360 1961 147 17 7 chr15 20116279 20116578 -65579176 - AluJb SINE Alu -10 302 1 439 268 84 53 chr15 20116578 20116666 -65579088 + L1ME4a LINE L1 5761 5845 -276 1525 137 0 4 chr15 20116734 20116960 -65578794 - AluSg/x SINE Alu -17 295 71 235 53 0 0 chr15 20117954 20117992 -65577762 + Alu SINE Alu 265 302 0 1499 176 3 52 chr15 20118054 20118361 -65577393 - AluJo SINE Alu -10 302 11 506 135 63 79 chr15 20118475 20118530 -65577224 - L1MB5 LINE L1 0 6174 6120 2246 129 0 0 chr15 20118530 20118839 -65576915 + AluSx SINE Alu 1 309 -3 506 135 63 79 chr15 20118839 20118909 -65576845 - L1MB5 LINE L1 -54 6120 6051 618 218 156 31 chr15 20119271 20119496 -65576258 + HAL1 LINE L1 11 263 -2244 1946 232 76 34 chr15 20119532 20120179 -65575575 + HAL1 LINE L1 455 1128 -1379 1079 150 26 75 chr15 20120184 20120377 -65575377 + L1MB7 LINE L1 5626 5746 -432 2181 98 3 17 chr15 20120377 20120695 -65575059 + AluSp SINE Alu 1 314 0 1079 150 26 75 chr15 20120695 20120914 -65574840 + L1MB7 LINE L1 5746 5974 -204 1197 136 86 47 chr15 20120920 20121177 -65574577 + L1MB7 LINE L1 5915 6181 -3 1495 197 199 130 chr15 20121180 20121546 -65574208 + HAL1 LINE L1 1125 1464 -1043 217 0 61 0 chr15 20121555 20121588 -65574166 + (TTG)n Simple_repeat Simple_repeat 2 36 0 834 167 0 0 chr15 20121588 20121710 -65574044 - FLAM_C SINE Alu -187 125 1 1495 197 199 130 chr15 20121710 20122326 -65573428 + HAL1 LINE L1 1464 2331 -176 1691 170 17 30 chr15 20122326 20122626 -65573128 + AluJo SINE Alu 1 296 -16 1495 197 199 130 chr15 20122626 20122720 -65573034 + HAL1 LINE L1 2331 2417 -90 1840 141 10 39 chr15 20122813 20123119 -65572635 - AluJb SINE Alu -15 297 1 2103 125 7 3 chr15 20123544 20123840 -65571914 - AluSx SINE Alu -15 297 1 730 219 0 0 chr15 20123851 20123979 -65571775 - FLAM_C SINE Alu -4 129 2 1861 170 0 16 chr15 20124018 20124330 -65571424 + AluJb SINE Alu 1 307 -5 691 232 101 29 chr15 20124417 20124624 -65571130 - MIR SINE MIR -27 235 14 29 28 0 0 chr15 20124946 20124982 -65570772 + AT_rich Low_complexity Low_complexity 1 36 0 333 73 0 0 chr15 20125220 20125261 -65570493 + MER4B LTR ERV1 499 539 -71 21 0 0 0 chr15 20125261 20125282 -65570472 + AT_rich Low_complexity Low_complexity 1 21 0 602 201 21 28 chr15 20125431 20125575 -65570179 + L1MB7 LINE L1 6042 6184 0 333 239 82 37 chr15 20127052 20127186 -65568568 + L1ME4a LINE L1 5981 6120 -1 2209 112 0 3 chr15 20127188 20127483 -65568271 - AluSx SINE Alu -18 294 1 31 0 0 0 chr15 20127491 20127522 -65568232 + AT_rich Low_complexity Low_complexity 1 31 0 909 231 93 4 chr15 20127848 20128073 -65567681 + MIR SINE MIR 5 249 -13 5661 109 102 117 chr15 20128609 20130201 -65565553 - pTR5 LTR ERV1 0 2438 741 224 219 0 0 chr15 20130211 20130252 -65565502 + A-rich Low_complexity Low_complexity 3 43 0 184 228 70 35 chr15 20131161 20131218 -65564536 + L2 LINE L2 916 974 -2340 2307 114 0 0 chr15 20131742 20132049 -65563705 + AluSx SINE Alu 5 311 -1 2438 88 0 0 chr15 20132774 20133082 -65562672 + AluY SINE Alu 1 308 -3 930 139 0 0 chr15 20134684 20134813 -65560941 + FLAM_C SINE Alu 1 129 -14 286 181 278 0 chr15 20134874 20134946 -65560808 + FLAM_A SINE Alu 23 114 -19 213 39 0 0 chr15 20134946 20134972 -65560782 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 2161 119 3 10 chr15 20135922 20136232 -65559522 + AluSx SINE Alu 1 308 -4 241 278 0 0 chr15 20136688 20136742 -65559012 + CT-rich Low_complexity Low_complexity 1 54 0 288 0 0 0 chr15 20137216 20137248 -65558506 + (CA)n Simple_repeat Simple_repeat 2 33 0 604 141 0 109 chr15 20137248 20137290 -65558464 - AluJo/FRAM SINE Alu -3 309 264 2457 75 0 0 chr15 20137290 20137585 -65558169 + AluSc SINE Alu 1 295 -14 604 141 0 109 chr15 20137585 20137670 -65558084 - AluJo/FRAM SINE Alu -48 264 196 2353 59 0 7 chr15 20137701 20138017 -65557737 + AluY SINE Alu 1 314 0 1886 142 14 17 chr15 20138109 20138242 -65557512 + AluSx SINE Alu 1 133 -179 2293 88 0 0 chr15 20138242 20138536 -65557218 + AluY SINE Alu 1 294 -17 1886 142 14 17 chr15 20138536 20138698 -65557056 + AluSx SINE Alu 133 295 -17 433 248 59 98 chr15 20138705 20138959 -65556795 + L1MC4 LINE L1 7634 7877 -165 351 0 0 0 chr15 20138989 20139028 -65556726 + (CA)n Simple_repeat Simple_repeat 2 40 0 301 232 49 37 chr15 20139204 20139286 -65556468 + L1ME4a LINE L1 5966 6048 -73 2605 239 78 63 chr15 20139573 20139913 -65555841 + L2 LINE L2 2065 2399 -914 261 200 0 100 chr15 20139913 20139973 -65555781 + FLAM_A SINE Alu 1 40 -93 2605 239 78 63 chr15 20139973 20140503 -65555251 + L2 LINE L2 2399 3020 -293 1715 151 4 0 chr15 20140503 20140761 -65554993 - AluJb SINE Alu -11 301 43 2605 239 78 63 chr15 20140761 20141040 -65554714 + L2 LINE L2 3020 3293 -20 2507 64 0 0 chr15 20141049 20141347 -65554407 + AluY SINE Alu 1 298 -13 1950 113 0 28 chr15 20141347 20141629 -65554125 + AluSx SINE Alu 33 307 -5 2205 98 10 0 chr15 20141849 20142156 -65553598 + AluSp SINE Alu 1 310 -3 201 317 0 0 chr15 20142650 20142691 -65553063 - L2 LINE L2 -98 3174 3134 234 329 0 0 chr15 20142893 20142963 -65552791 - L2 LINE L2 -296 2976 2907 2200 119 0 0 chr15 20142996 20143289 -65552465 - AluSq SINE Alu -20 293 1 4637 158 45 39 chr15 20143290 20143590 -65552164 - L1MD2 LINE L1 -163 6196 5899 1739 176 7 0 chr15 20143590 20143880 -65551874 - AluJo SINE Alu -16 296 5 4637 158 45 39 chr15 20143880 20144092 -65551662 - L1MD2 LINE L1 -460 5899 5690 2139 121 30 0 chr15 20144092 20144390 -65551364 - AluSx SINE Alu -5 307 1 4637 158 45 39 chr15 20144390 20144916 -65550838 - L1MD2 LINE L1 -669 5690 5147 409 143 0 0 chr15 20144976 20145032 -65550722 + AluS SINE Alu 2 57 -261 228 194 15 30 chr15 20146486 20146553 -65549201 + CT-rich Low_complexity Low_complexity 1 66 0 989 179 0 0 chr15 20146618 20146774 -65548980 - AluSg/x SINE Alu -23 289 134 5706 32 3 0 chr15 20146918 20147547 -65548207 - L1PA3 LINE L1 0 6155 5525 2090 131 0 3 chr15 20147585 20147875 -65547879 + AluSx SINE Alu 1 289 -23 494 230 0 0 chr15 20147885 20147972 -65547782 + FRAM SINE Alu 17 103 -73 281 26 26 0 chr15 20148061 20148099 -65547655 + (TC)n Simple_repeat Simple_repeat 2 40 0 1536 171 4 25 chr15 20148111 20148386 -65547368 - AluJo SINE Alu -39 273 5 1938 125 20 27 chr15 20148486 20148651 -65547103 - AluSx SINE Alu -17 295 131 2274 96 0 0 chr15 20148651 20148944 -65546810 - AluSc SINE Alu -16 293 1 1938 125 20 27 chr15 20148944 20149075 -65546679 - AluSx SINE Alu -181 131 1 184 370 0 0 chr15 20151333 20151387 -65544367 - L2 LINE L2 -76 3196 3143 442 343 47 45 chr15 20151700 20152193 -65543561 + L1MEd LINE L1 843 1336 -5036 245 281 52 0 chr15 20152250 20152346 -65543408 + L1MEd LINE L1 1292 1392 -4992 240 250 0 0 chr15 20152390 20152446 -65543308 + GA-rich Low_complexity Low_complexity 1 56 0 1823 134 30 24 chr15 20152755 20153053 -65542701 - AluSx SINE Alu -11 301 2 1032 243 40 58 chr15 20153054 20153314 -65542440 - L1M4 LINE L1 -3063 3083 2831 2108 106 55 0 chr15 20153314 20153607 -65542147 - AluSx SINE Alu -1 311 3 1032 243 40 58 chr15 20153607 20153725 -65542029 - L1M4 LINE L1 -3315 2831 2712 21 82 0 0 chr15 20154292 20154341 -65541413 + AT_rich Low_complexity Low_complexity 1 49 0 22 70 0 0 chr15 20154592 20154635 -65541119 + AT_rich Low_complexity Low_complexity 1 43 0 1360 269 60 49 chr15 20154915 20155489 -65540265 + MLT1G LTR MaLR 10 549 0 3238 180 49 19 chr15 20155724 20156731 -65539023 + MER61-int LTR ERV1 1409 4471 -2525 1878 152 29 37 chr15 20156732 20157080 -65538674 + THE1B LTR MaLR 1 345 -19 879 207 17 0 chr15 20157098 20157272 -65538482 + MER61-int LTR ERV1 1720 1896 -3321 2394 63 0 0 chr15 20157526 20157812 -65537942 + AluY SINE Alu 14 299 -12 189 0 0 0 chr15 20157838 20157859 -65537895 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 249 277 84 42 chr15 20158347 20158513 -65537241 + L1MC5 LINE L1 7692 7864 -97 619 134 0 0 chr15 20158806 20158888 -65536866 - AluS SINE Alu -229 83 2 458 131 60 0 chr15 20160784 20160868 -65534886 - AluJ/FLAM SINE Alu -222 90 2 32 81 0 0 chr15 20160972 20161046 -65534708 + AT_rich Low_complexity Low_complexity 1 74 0 2496 91 0 0 chr15 20161153 20161462 -65534292 + AluSx SINE Alu 1 309 -3 2176 119 0 7 chr15 20161479 20161773 -65533981 + AluSx SINE Alu 1 292 -20 1289 208 112 11 chr15 20161779 20162039 -65533715 + AluJo SINE Alu 1 286 -16 2222 117 0 0 chr15 20162814 20163112 -65532642 - AluSx SINE Alu -14 298 1 188 0 74 0 chr15 20163257 20163284 -65532470 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 411 333 11 32 chr15 20163585 20163771 -65531983 - L3b LINE CR1 -137 1446 1265 2308 82 13 7 chr15 20166451 20166754 -65529000 + AluSp SINE Alu 1 305 -8 2147 115 24 0 chr15 20168338 20168633 -65527121 + AluSx SINE Alu 1 302 -10 337 293 51 32 chr15 20169027 20169184 -65526570 - MIR SINE MIR -56 206 47 354 266 18 9 chr15 20176115 20176228 -65519526 + GA-rich Low_complexity Low_complexity 1 114 0 2408 80 0 10 chr15 20189240 20189539 -65506215 + AluSx SINE Alu 1 296 -16 1157 149 0 11 chr15 20189539 20189720 -65506034 + AluSg/x SINE Alu 132 310 0 522 221 92 131 chr15 20189729 20189956 -65505798 - L1MC5 LINE L1 -252 7709 7475 1650 179 14 3 chr15 20189956 20190241 -65505513 - AluJb SINE Alu -24 288 1 522 221 92 131 chr15 20190241 20190263 -65505491 - L1MC5 LINE L1 -486 7475 7454 2261 116 3 22 chr15 20190263 20190581 -65505173 + AluSq SINE Alu 1 312 -1 522 221 92 131 chr15 20190581 20191069 -65504685 - L1MC5 LINE L1 -507 7454 7000 1823 158 4 7 chr15 20191142 20191420 -65504334 - AluJb SINE Alu -34 278 2 450 0 0 0 chr15 20191476 20191526 -65504228 + (TG)n Simple_repeat Simple_repeat 2 51 0 1360 199 17 0 chr15 20191526 20191767 -65503987 - AluJo SINE Alu -26 286 42 333 244 125 3 chr15 20191778 20191934 -65503820 - L1MC4 LINE L1 -869 6939 6758 581 193 90 14 chr15 20191946 20192091 -65503663 + MER106A DNA MER1_type 44 199 -37 1186 86 0 0 chr15 20192092 20192283 -65503471 + L1PA4 LINE L1 5991 6155 0 2568 248 105 49 chr15 20192325 20193341 -65502413 - L1MC4a LINE L1 -1036 6772 5815 1628 167 6 62 chr15 20193341 20193665 -65502089 + AluJo SINE Alu 1 306 -6 2568 248 105 49 chr15 20193665 20193725 -65502029 - L1MC4a LINE L1 -1993 5815 5760 2409 81 3 0 chr15 20193725 20194023 -65501731 + AluY SINE Alu 1 299 -12 2568 248 105 49 chr15 20194023 20194297 -65501457 - L1MC4a LINE L1 -2048 5760 5345 675 223 24 24 chr15 20194303 20194469 -65501285 - FRAM SINE Alu 0 166 1 4473 183 129 164 chr15 20194599 20194767 -65500987 - L1MB4 LINE L1 0 6180 6008 544 29 0 0 chr15 20194767 20194836 -65500918 + MER41B LTR ERV1 481 549 -86 4473 183 129 164 chr15 20194836 20195119 -65500635 - L1MB4 LINE L1 -172 6008 5717 1718 174 37 17 chr15 20195119 20195418 -65500336 - AluJo SINE Alu -7 305 1 4473 183 129 164 chr15 20195418 20195482 -65500272 - L1MB4 LINE L1 -463 5717 5652 2013 145 20 7 chr15 20195482 20195786 -65499968 - AluJb SINE Alu -4 308 1 4473 183 129 164 chr15 20195786 20196841 -65498913 - L1MB4 LINE L1 -528 5652 4561 343 120 0 0 chr15 20196841 20196891 -65498863 - AluJb SINE Alu -7 295 246 960 153 5 100 chr15 20196893 20196932 -65498822 - AluJb SINE Alu -139 173 132 2092 109 0 34 chr15 20196932 20197225 -65498529 - AluSg SINE Alu -19 291 9 960 153 5 100 chr15 20197225 20197375 -65498379 - AluJb SINE Alu -180 132 2 1736 154 9 72 chr15 20197376 20197573 -65498181 - AluJo SINE Alu -13 299 91 2330 97 3 7 chr15 20197573 20197883 -65497871 + AluSx SINE Alu 3 311 -1 294 29 0 0 chr15 20197883 20197918 -65497836 + (TA)n Simple_repeat Simple_repeat 2 36 0 1736 154 9 72 chr15 20197918 20198038 -65497716 - AluJo SINE Alu -219 93 1 4473 183 129 164 chr15 20198038 20198209 -65497545 - L1MB4 LINE L1 -1620 4560 4384 1712 167 39 0 chr15 20198209 20198490 -65497264 + AluJb SINE Alu 1 292 -20 4473 183 129 164 chr15 20198490 20198529 -65497225 - L1MB4 LINE L1 -1796 4384 4345 1906 166 0 0 chr15 20198529 20198807 -65496947 + AluJb SINE Alu 14 291 -21 790 180 0 0 chr15 20198811 20198933 -65496821 - FLAM_C SINE Alu -11 122 1 4473 183 129 164 chr15 20198933 20198956 -65496798 - L1MB4 LINE L1 -1838 4342 4320 1730 177 44 0 chr15 20198956 20199129 -65496625 - AluJb SINE Alu -5 307 114 183 42 0 0 chr15 20199129 20199153 -65496601 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1730 177 44 0 chr15 20199153 20199273 -65496481 - AluJb SINE Alu -198 114 1 4473 183 129 164 chr15 20199273 20200063 -65495691 - L1MB4 LINE L1 -1860 4320 3504 2237 115 3 3 chr15 20200063 20200359 -65495395 + AluSx SINE Alu 1 296 -16 4473 183 129 164 chr15 20200359 20200434 -65495320 - L1MB4 LINE L1 -2676 3504 3428 2702 24 0 3 chr15 20200434 20200730 -65495024 - AluYa5 SINE Alu -16 295 1 4473 183 129 164 chr15 20200730 20200805 -65494949 - L1MB4 LINE L1 -2752 3428 3352 1451 213 72 4 chr15 20200805 20201082 -65494672 - AluJb SINE Alu -16 296 1 4473 183 129 164 chr15 20201082 20201251 -65494503 - L1MB4 LINE L1 -2828 3352 3179 1474 114 111 97 chr15 20201251 20201549 -65494205 + AluJb SINE Alu 1 302 -10 4473 183 129 164 chr15 20201549 20201591 -65494163 - L1MB4 LINE L1 -3001 3179 3137 2156 122 24 0 chr15 20201591 20201887 -65493867 + AluSx SINE Alu 3 305 -7 4473 183 129 164 chr15 20201887 20202158 -65493596 - L1MB4 LINE L1 -3043 3137 2858 1639 182 0 40 chr15 20202158 20202454 -65493300 - AluJo SINE Alu -2 310 27 2480 81 0 3 chr15 20202464 20202773 -65492981 - AluY SINE Alu -3 308 1 4473 183 129 164 chr15 20202773 20202825 -65492929 - L1MB4 LINE L1 -3331 2849 2797 802 211 56 0 chr15 20202825 20202986 -65492768 + FRAM SINE Alu 1 166 -10 4473 183 129 164 chr15 20202986 20203154 -65492600 - L1MB4 LINE L1 -3383 2797 2625 625 205 34 0 chr15 20203154 20203271 -65492483 - FLAM_A SINE Alu -8 125 5 4473 183 129 164 chr15 20203271 20203426 -65492328 - L1MB4 LINE L1 -3555 2625 2234 354 107 0 0 chr15 20203446 20203502 -65492252 + (CA)n Simple_repeat Simple_repeat 1 56 0 33 25 0 0 chr15 20203607 20203647 -65492107 + AT_rich Low_complexity Low_complexity 1 40 0 2048 140 0 3 chr15 20203670 20203963 -65491791 - AluSq SINE Alu -19 294 3 21 0 0 0 chr15 20203980 20204001 -65491753 + AT_rich Low_complexity Low_complexity 1 21 0 1865 171 0 31 chr15 20204092 20204414 -65491340 - AluJb SINE Alu 0 312 1 1971 145 6 25 chr15 20204417 20204734 -65491020 - AluSx SINE Alu -1 311 1 21 82 0 0 chr15 20204734 20204783 -65490971 + AT_rich Low_complexity Low_complexity 1 49 0 2367 108 0 7 chr15 20204866 20205173 -65490581 + AluSc SINE Alu 1 305 -4 1115 129 0 18 chr15 20205182 20205345 -65490409 + AluSx SINE Alu 1 160 -152 521 344 72 36 chr15 20205413 20205855 -65489899 - L1M4 LINE L1 -6061 481 24 239 317 58 8 chr15 20205871 20205991 -65489763 - L1 LINE L1 -1127 5019 4894 2118 120 0 7 chr15 20205992 20206283 -65489471 + AluSx SINE Alu 1 289 -23 489 230 0 0 chr15 20206293 20206380 -65489374 + FRAM SINE Alu 17 103 -73 1587 200 3 23 chr15 20206484 20206794 -65488960 - AluJo SINE Alu -4 308 5 1972 134 20 7 chr15 20206894 20207054 -65488700 - AluSx SINE Alu -16 296 129 2320 103 0 0 chr15 20207054 20207354 -65488400 - AluSc SINE Alu -9 300 1 1972 134 20 7 chr15 20207354 20207485 -65488269 - AluSx SINE Alu -183 129 1 1972 168 0 0 chr15 20214381 20214678 -65481076 - AluJo SINE Alu -15 297 1 740 222 25 6 chr15 20214678 20214840 -65480914 - MIR3 SINE MIR -11 197 33 2246 130 0 3 chr15 20215946 20216245 -65479509 - AluSx SINE Alu -14 298 1 834 167 0 0 chr15 20218673 20218799 -65476955 - FLAM_C SINE Alu -17 126 1 280 227 45 162 chr15 20219776 20219930 -65475824 - MIR SINE MIR -93 169 34 1860 136 9 22 chr15 20220925 20221106 -65474648 - AluSx SINE Alu 0 312 135 2302 92 0 0 chr15 20221106 20221400 -65474354 - AluSg SINE Alu -16 294 1 1860 136 9 22 chr15 20221400 20221534 -65474220 - AluSx SINE Alu -177 135 1 1924 145 7 0 chr15 20221550 20221846 -65473908 - AluSx SINE Alu -14 298 1 366 259 69 65 chr15 20221848 20222064 -65473690 + L1MC5 LINE L1 7703 7919 -42 1723 88 58 0 chr15 20222602 20222842 -65472912 - AluSp SINE Alu -13 300 47 2128 70 52 3 chr15 20223005 20223292 -65472462 + AluY SINE Alu 1 301 -10 225 0 0 0 chr15 20224087 20224112 -65471642 + (TC)n Simple_repeat Simple_repeat 2 26 0 2223 113 0 0 chr15 20224112 20224413 -65471341 - AluSx SINE Alu -11 301 1 2217 95 0 31 chr15 20224447 20224764 -65470990 - AluSg SINE Alu -3 307 1 2207 109 3 0 chr15 20225377 20225681 -65470073 - AluSq SINE Alu -8 305 1 204 323 156 10 chr15 20225900 20225996 -65469758 + MER5A DNA MER1_type 80 189 0 30 0 0 0 chr15 20228095 20228125 -65467629 + AT_rich Low_complexity Low_complexity 1 30 0 2168 108 3 0 chr15 20228392 20228689 -65467065 + AluSq SINE Alu 1 298 -15 556 74 0 49 chr15 20228825 20228906 -65466848 + Alu SINE Alu 1 77 -241 1305 253 28 83 chr15 20229018 20229124 -65466630 - L1MC/D LINE L1 -2031 5777 5667 1451 155 7 68 chr15 20229124 20229433 -65466321 + AluJo SINE Alu 1 290 -22 1305 253 28 83 chr15 20229433 20229509 -65466245 - L1MC/D LINE L1 -2141 5667 5588 2322 77 0 0 chr15 20229509 20229808 -65465946 + AluY SINE Alu 1 299 -12 1305 253 28 83 chr15 20229808 20230082 -65465672 - L1MC/D LINE L1 -2220 5588 5345 648 223 24 24 chr15 20230088 20230254 -65465500 - FRAM SINE Alu 0 166 1 1075 113 18 6 chr15 20230384 20230552 -65465202 - L1MB5 LINE L1 0 6174 6005 567 29 0 0 chr15 20230552 20230621 -65465133 + MER41A LTR ERV1 400 468 -86 1955 139 45 45 chr15 20230637 20230922 -65464832 - L1MB5 LINE L1 -156 6018 5731 1534 148 44 19 chr15 20230922 20231192 -65464562 - AluJo SINE Alu -25 287 11 1955 139 45 45 chr15 20231192 20231265 -65464489 - L1MB5 LINE L1 -442 5732 5660 2164 93 21 0 chr15 20231266 20231556 -65464198 - AluSg SINE Alu -14 296 1 1531 191 30 3 chr15 20231621 20231925 -65463829 + AluJb SINE Alu 1 312 0 26 64 0 0 chr15 20232010 20232057 -65463697 + AT_rich Low_complexity Low_complexity 1 47 0 1557 139 111 84 chr15 20232133 20232201 -65463553 - MER51A LTR ERV1 0 634 569 2275 94 0 0 chr15 20232201 20232500 -65463254 + AluSx SINE Alu 1 299 -13 1557 139 111 84 chr15 20232500 20232841 -65462913 - MER51A LTR ERV1 -65 569 1 702 96 0 39 chr15 20234443 20234547 -65461207 - AluY SINE Alu -218 100 1 2168 108 3 0 chr15 20234683 20234980 -65460774 - AluSq SINE Alu -15 298 1 30 0 0 0 chr15 20235247 20235277 -65460477 + AT_rich Low_complexity Low_complexity 1 30 0 204 323 156 10 chr15 20237378 20237474 -65458280 - MER5A DNA MER1_type 0 189 80 2207 109 3 0 chr15 20237693 20237997 -65457757 + AluSq SINE Alu 1 305 -8 2217 95 0 31 chr15 20238611 20238928 -65456826 + AluSg SINE Alu 1 307 -3 2223 113 0 0 chr15 20238962 20239263 -65456491 + AluSx SINE Alu 1 301 -11 225 0 0 0 chr15 20239263 20239288 -65456466 + (GA)n Simple_repeat Simple_repeat 2 26 0 2069 74 53 3 chr15 20240084 20240369 -65455385 - AluY SINE Alu -10 301 3 830 162 0 21 chr15 20240371 20240513 -65455241 - FLAM_C SINE Alu -3 140 2 1584 154 9 72 chr15 20240514 20240711 -65455043 - AluJo SINE Alu -13 299 91 2178 97 3 7 chr15 20240711 20241021 -65454733 + AluSx SINE Alu 3 311 -1 294 29 0 0 chr15 20241021 20241056 -65454698 + (TA)n Simple_repeat Simple_repeat 1 35 0 1584 154 9 72 chr15 20241056 20241176 -65454578 - AluJo SINE Alu -219 93 1 2805 201 151 96 chr15 20241176 20241346 -65454408 - L1 LINE L1 -1655 4491 4332 1575 167 39 0 chr15 20241346 20241627 -65454127 + AluJb SINE Alu 1 292 -20 2805 201 151 96 chr15 20241627 20241666 -65454088 - L1 LINE L1 -1814 4332 4297 1766 166 0 0 chr15 20241666 20241944 -65453810 + AluJb SINE Alu 14 291 -21 770 180 0 0 chr15 20241948 20242070 -65453684 - FLAM_C SINE Alu -11 122 1 2805 201 151 96 chr15 20242070 20242093 -65453661 - L1 LINE L1 -1851 4295 4275 1587 177 44 0 chr15 20242093 20242266 -65453488 - AluJb SINE Alu -5 307 114 183 42 0 0 chr15 20242266 20242290 -65453464 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1587 177 44 0 chr15 20242290 20242410 -65453344 - AluJb SINE Alu -198 114 1 2805 201 151 96 chr15 20242410 20243200 -65452554 - L1 LINE L1 -1871 4275 3530 2088 115 3 3 chr15 20243200 20243496 -65452258 + AluSx SINE Alu 1 296 -16 2805 201 151 96 chr15 20243496 20243571 -65452183 - L1 LINE L1 -2616 3530 3461 2563 24 0 3 chr15 20243571 20243867 -65451887 - AluYa5 SINE Alu -16 295 1 2805 201 151 96 chr15 20243867 20243942 -65451812 - L1 LINE L1 -2685 3461 3392 1309 213 72 4 chr15 20243942 20244219 -65451535 - AluJb SINE Alu -16 296 1 2805 201 151 96 chr15 20244219 20244388 -65451366 - L1 LINE L1 -2754 3392 3234 1371 114 111 94 chr15 20244388 20244685 -65451069 + AluJb SINE Alu 1 302 -10 2805 201 151 96 chr15 20244685 20244727 -65451027 - L1 LINE L1 -2912 3234 3196 2006 122 24 0 chr15 20244727 20245023 -65450731 + AluSx SINE Alu 3 305 -7 2805 201 151 96 chr15 20245023 20245294 -65450460 - L1 LINE L1 -2950 3196 2941 1491 182 0 40 chr15 20245294 20245590 -65450164 - AluJo SINE Alu -2 310 27 2331 81 0 3 chr15 20245600 20245909 -65449845 - AluY SINE Alu -3 308 1 2805 201 151 96 chr15 20245909 20245960 -65449794 - L1 LINE L1 -3213 2933 2553 778 211 56 0 chr15 20245961 20246122 -65449632 + FRAM SINE Alu 1 166 -10 1067 196 50 53 chr15 20246125 20246290 -65449464 - L1 LINE L1 -3593 2553 2388 599 188 34 17 chr15 20246290 20246407 -65449347 - FLAM_A SINE Alu -10 123 5 1067 196 50 53 chr15 20246407 20246562 -65449192 - L1 LINE L1 -3758 2388 2234 354 107 0 0 chr15 20246582 20246638 -65449116 + (CA)n Simple_repeat Simple_repeat 1 56 0 33 25 0 0 chr15 20246743 20246783 -65448971 + AT_rich Low_complexity Low_complexity 1 40 0 1903 140 0 3 chr15 20246806 20247099 -65448655 - AluSq SINE Alu -19 294 3 21 0 0 0 chr15 20247116 20247137 -65448617 + AT_rich Low_complexity Low_complexity 1 21 0 1707 171 0 31 chr15 20247228 20247550 -65448204 - AluJb SINE Alu 0 312 1 1815 145 6 25 chr15 20247553 20247870 -65447884 - AluSx SINE Alu -1 311 1 21 82 0 0 chr15 20247870 20247919 -65447835 + AT_rich Low_complexity Low_complexity 1 49 0 2214 108 0 7 chr15 20248002 20248309 -65447445 + AluSc SINE Alu 1 305 -4 339 123 0 10 chr15 20248318 20248521 -65447233 + AluSx SINE Alu 1 296 -4 576 337 75 39 chr15 20248549 20248991 -65446763 - L1M4 LINE L1 -6061 481 24 251 317 58 8 chr15 20249007 20249127 -65446627 - L1 LINE L1 -1127 5019 4894 1948 124 0 7 chr15 20249128 20249419 -65446335 + AluSx SINE Alu 1 289 -23 472 230 0 0 chr15 20249429 20249516 -65446238 + FRAM SINE Alu 17 103 -73 1446 201 3 19 chr15 20249620 20249929 -65445825 - AluJo SINE Alu -4 308 5 1839 123 20 33 chr15 20250029 20250195 -65445559 - AluSx SINE Alu -16 296 134 2135 103 0 0 chr15 20250195 20250487 -65445267 - AluSc SINE Alu -15 294 3 1839 123 20 33 chr15 20250487 20250620 -65445134 - AluSx SINE Alu -178 134 1 1815 169 0 0 chr15 20257513 20257809 -65437945 - AluJo SINE Alu -16 296 1 741 222 25 6 chr15 20257809 20257971 -65437783 - MIR3 SINE MIR -11 197 33 2196 125 0 3 chr15 20259079 20259392 -65436362 - AluSx SINE Alu 0 312 1 834 167 0 0 chr15 20261820 20261946 -65433808 - FLAM_C SINE Alu -17 126 1 280 227 45 162 chr15 20262923 20263077 -65432677 - MIR SINE MIR -93 169 34 1718 157 26 26 chr15 20264126 20264432 -65431322 + AluJb SINE Alu 1 306 -6 437 110 0 52 chr15 20267062 20267155 -65428599 + L1MB3 LINE L1 6080 6167 -16 372 280 160 8 chr15 20267276 20267401 -65428353 + MIR SINE MIR 1 144 -118 748 259 128 71 chr15 20267428 20267894 -65427860 + MLT1H LTR MaLR 1 548 -1 1111 223 103 13 chr15 20267896 20268196 -65427558 - MER46C DNA MER2_type -11 327 1 343 257 48 29 chr15 20268196 20268301 -65427453 + MIR SINE MIR 156 262 0 1684 146 13 52 chr15 20270229 20270538 -65425216 + AluJo SINE Alu 14 310 -2 706 135 4 2 chr15 20270577 20270838 -65424916 + AluSx SINE Alu 1 310 -2 372 133 0 0 chr15 20271358 20271418 -65424336 + (CA)n Simple_repeat Simple_repeat 2 61 0 288 300 0 0 chr15 20271467 20271557 -65424197 + L1MC4 LINE L1 6614 6703 -1339 252 303 0 0 chr15 20271522 20271611 -65424143 - L1MC4 LINE L1 -1340 6702 6614 * 2352 115 0 13 chr15 20271628 20271804 -65423950 - AluSq SINE Alu -4 309 137 2278 108 0 25 chr15 20271804 20272120 -65423634 - AluSq SINE Alu -5 308 1 2352 115 0 13 chr15 20272120 20272256 -65423498 - AluSq SINE Alu -176 137 1 34 0 0 0 chr15 20272538 20272572 -65423182 + AT_rich Low_complexity Low_complexity 1 34 0 2051 138 3 0 chr15 20272572 20272868 -65422886 - AluSq SINE Alu -16 297 1 2123 114 41 0 chr15 20275853 20276143 -65419611 - AluSx SINE Alu -10 302 1 1891 162 3 13 chr15 20277104 20277413 -65418341 + AluJb SINE Alu 1 306 -6 1541 171 7 79 chr15 20277465 20277597 -65418157 + AluJo SINE Alu 1 141 -197 1457 220 0 14 chr15 20277597 20277883 -65417871 + AluJo SINE Alu 1 282 -30 2374 68 6 40 chr15 20277883 20278205 -65417549 + AluY SINE Alu 1 311 0 2105 108 10 24 chr15 20278207 20278502 -65417252 - AluSg SINE Alu -19 291 1 1541 171 7 79 chr15 20278502 20278725 -65417029 + AluJo SINE Alu 141 338 0 457 253 75 118 chr15 20278981 20279021 -65416733 + L1ME3A LINE L1 5619 5659 -511 1127 174 53 0 chr15 20279021 20279228 -65416526 + MER20 DNA MER1_type 2 219 0 457 253 75 118 chr15 20279228 20279587 -65416167 + L1ME3A LINE L1 5659 6001 -169 2294 101 0 7 chr15 20279981 20280288 -65415466 + AluSq SINE Alu 3 307 -6 404 255 9 19 chr15 20282761 20282867 -65412887 + MIR SINE MIR 48 152 -110 2280 105 0 10 chr15 20282872 20283177 -65412577 + AluSc SINE Alu 1 302 -7 1820 188 0 3 chr15 20283197 20283500 -65412254 + AluJb SINE Alu 1 302 -10 396 254 23 39 chr15 20288572 20288702 -65407052 + MER94 DNA DNA 7 134 0 538 180 99 0 chr15 20289272 20289416 -65406338 + MIR SINE MIR 93 252 -10 1674 125 143 0 chr15 20290419 20290691 -65405063 + AluJb SINE Alu 1 311 -1 380 277 84 26 chr15 20293547 20293702 -65402052 + MIR3 SINE MIR 14 177 -31 2160 117 16 23 chr15 20293810 20294119 -65401635 + AluJb SINE Alu 1 307 -5 1900 153 0 10 chr15 20294155 20294456 -65401298 - AluJb SINE Alu -14 298 1 537 144 31 21 chr15 20294516 20294613 -65401141 + U6 snRNA snRNA 2 99 -8 2265 109 0 3 chr15 20294613 20294917 -65400837 - AluY SINE Alu -8 303 1 304 303 22 0 chr15 20295802 20295891 -65399863 - MIR3 SINE MIR -7 201 111 234 313 0 21 chr15 20297609 20297705 -65398049 - MIR SINE MIR -67 195 102 272 265 26 43 chr15 20297787 20297854 -65397900 - MIR SINE MIR -30 232 166 1817 147 0 15 chr15 20297854 20298126 -65397628 - AluSg SINE Alu -40 270 3 272 265 26 43 chr15 20298126 20298175 -65397579 - MIR SINE MIR -96 166 118 2289 95 0 0 chr15 20298292 20298608 -65397146 + AluSg SINE Alu 1 316 0 1993 131 0 0 chr15 20298728 20299002 -65396752 + AluSx SINE Alu 39 312 0 469 324 199 17 chr15 20299171 20299458 -65396296 - L3 LINE CR1 -20 1557 1219 181 286 20 92 chr15 20299527 20299625 -65396129 - L3 LINE CR1 -542 1035 945 201 323 21 21 chr15 20300342 20300438 -65395316 - MIR SINE MIR -68 140 45 2150 80 8 0 chr15 20300453 20300715 -65395039 + AluSx SINE Alu 39 302 -10 766 293 36 9 chr15 20300824 20301046 -65394708 - MIR SINE MIR 0 262 35 347 208 50 40 chr15 20301116 20301217 -65394537 + L2 LINE L2 3163 3264 -8 1563 153 0 124 chr15 20301540 20301714 -65394040 + AluJo SINE Alu 1 114 -198 2221 108 0 16 chr15 20301714 20302021 -65393733 + AluSg SINE Alu 1 302 -8 1563 153 0 124 chr15 20302021 20302185 -65393569 + AluJo SINE Alu 114 297 -15 354 261 22 0 chr15 20302618 20302710 -65393044 + MIR3 SINE MIR 98 191 -17 261 0 0 0 chr15 20302973 20303002 -65392752 + (TG)n Simple_repeat Simple_repeat 2 30 0 2258 103 3 19 chr15 20305297 20305608 -65390146 - AluSg SINE Alu 0 310 5 565 173 0 0 chr15 20305644 20305748 -65390006 + U13 snRNA snRNA 1 104 0 265 204 0 19 chr15 20306747 20306801 -65388953 + L2 LINE L2 3201 3253 -19 * 429 259 49 48 chr15 20306768 20306940 -65388814 - MIR3 SINE MIR -50 212 37 487 260 202 36 chr15 20307092 20307315 -65388439 - MIR SINE MIR 0 262 3 913 218 86 25 chr15 20309079 20309322 -65386432 - MIR SINE MIR -2 260 3 297 0 0 0 chr15 20310631 20310664 -65385090 + (CAG)n Simple_repeat Simple_repeat 1 33 0 350 256 51 34 chr15 20311220 20311337 -65384417 - MIR3 SINE MIR -7 201 83 2242 91 7 19 chr15 20311572 20311881 -65383873 - AluSx SINE Alu 0 312 8 2053 140 3 7 chr15 20311884 20312184 -65383570 - AluSx SINE Alu -13 299 1 694 194 0 0 chr15 20312400 20312534 -65383220 - FRAM SINE Alu -3 173 40 456 306 0 0 chr15 20312543 20312664 -65383090 - MIR3 SINE MIR -30 178 58 535 254 101 43 chr15 20312919 20313006 -65382748 + MIR SINE MIR 41 122 -140 237 83 0 0 chr15 20313006 20313042 -65382712 + (TTG)n Simple_repeat Simple_repeat 2 37 0 535 254 101 43 chr15 20313042 20313163 -65382591 + MIR SINE MIR 122 261 -1 238 156 89 0 chr15 20313131 20313176 -65382578 - L2 LINE L2 -3 3310 3262 * 2008 145 3 3 chr15 20313827 20314124 -65381630 - AluSx SINE Alu -15 297 1 306 172 31 0 chr15 20314223 20314287 -65381467 + MLT1J2 LTR MaLR 69 134 -316 330 315 41 45 chr15 20314344 20314424 -65381330 + MLT1I LTR MaLR 242 321 -88 3004 202 10 46 chr15 20314424 20314646 -65381108 - MER82 DNA MER2_type 0 653 425 2247 96 10 0 chr15 20314646 20314938 -65380816 - AluSc SINE Alu -14 295 1 3004 202 10 46 chr15 20314938 20315124 -65380630 - MER82 DNA MER2_type -228 425 234 2431 94 0 0 chr15 20315124 20315421 -65380333 + AluSx SINE Alu 3 299 -13 3004 202 10 46 chr15 20315421 20315688 -65380066 - MER82 DNA MER2_type -419 234 1 330 315 41 45 chr15 20315688 20315824 -65379930 + MLT1I LTR MaLR 321 409 0 2437 92 0 0 chr15 20316089 20316392 -65379362 + AluY SINE Alu 1 303 -8 2125 112 10 3 chr15 20316394 20316689 -65379065 - AluSp SINE Alu -16 297 1 1268 173 0 9 chr15 20316893 20317113 -65378641 + AluJo SINE Alu 95 312 0 335 237 52 21 chr15 20317189 20317286 -65378468 + L2 LINE L2 3209 3308 -5 1997 129 7 7 chr15 20317393 20317680 -65378074 + AluSx SINE Alu 1 287 -25 374 103 0 52 chr15 20317689 20317747 -65378007 + LTR8 LTR ERV1 549 603 -88 252 246 0 0 chr15 20317748 20317817 -65377937 + GA-rich Low_complexity Low_complexity 1 69 0 232 280 0 0 chr15 20317794 20317865 -65377889 + polypurine Low_complexity Low_complexity 1 71 0 * 1370 112 93 0 chr15 20317960 20318165 -65377589 - AluSq SINE Alu -89 224 1 203 191 0 48 chr15 20318197 20318239 -65377515 - MER5A DNA MER1_type -85 104 65 2343 97 0 0 chr15 20318240 20318528 -65377226 - AluSg SINE Alu -22 288 1 2232 58 46 8 chr15 20318535 20318832 -65376922 - AluY SINE Alu -8 303 1 1503 156 0 35 chr15 20318919 20319175 -65376579 - AluJb SINE Alu -55 257 11 734 182 8 0 chr15 20319201 20319322 -65376432 - FLAM_C SINE Alu -20 123 2 212 0 36 0 chr15 20319639 20319667 -65376087 + (TG)n Simple_repeat Simple_repeat 2 30 0 1304 182 76 51 chr15 20319767 20320042 -65375712 - AluJb SINE Alu -30 282 1 847 169 27 59 chr15 20320042 20320074 -65375680 - L1MB7 LINE L1 -44 6140 6109 2278 95 3 22 chr15 20320074 20320390 -65375364 - AluSq SINE Alu -3 310 1 847 169 27 59 chr15 20320390 20320576 -65375178 - L1MB7 LINE L1 -75 6109 5929 765 219 33 16 chr15 20320860 20321043 -65374711 - L1ME3 LINE L1 -10 6152 5967 365 214 0 87 chr15 20321369 20321472 -65374282 + MIR SINE MIR 47 140 -122 420 313 50 6 chr15 20321609 20321788 -65373966 + L3 LINE CR1 1382 1568 -9 827 195 52 0 chr15 20322167 20322321 -65373433 - FRAM SINE Alu -15 161 1 1332 126 0 16 chr15 20322418 20322609 -65373145 - AluSg/x SINE Alu -33 279 92 2054 126 3 3 chr15 20323277 20323571 -65372183 - AluSc SINE Alu -15 294 1 200 255 0 0 chr15 20324785 20324832 -65370922 + GA-rich Low_complexity Low_complexity 2 48 0 1217 204 199 0 chr15 20325144 20325541 -65370213 + L2 LINE L2 2457 2932 -382 979 214 39 101 chr15 20325661 20325885 -65369869 + L2 LINE L2 2852 3038 -275 1613 133 22 67 chr15 20325885 20326200 -65369554 + AluSx SINE Alu 1 301 -11 979 214 39 101 chr15 20326200 20326409 -65369345 + L2 LINE L2 3038 3258 -55 1703 185 26 7 chr15 20326431 20326733 -65369021 - AluJb SINE Alu 0 312 5 681 234 0 58 chr15 20326744 20326915 -65368839 - AluJo SINE Alu -25 287 127 1415 227 52 43 chr15 20327008 20327471 -65368283 - MLT1C LTR MaLR 0 467 1 2325 108 0 0 chr15 20328609 20328914 -65366840 - AluSx SINE Alu -7 305 1 2066 150 16 0 chr15 20329040 20329346 -65366408 - AluSx SINE Alu -1 311 1 33 56 0 0 chr15 20329538 20329592 -65366162 + AT_rich Low_complexity Low_complexity 1 54 0 813 103 0 0 chr15 20329855 20329962 -65365792 - U6 snRNA snRNA 0 107 1 358 230 44 18 chr15 20330060 20330160 -65365594 - MIR SINE MIR -10 252 147 2268 110 3 16 chr15 20330160 20330477 -65365277 - AluSq SINE Alu 0 313 1 358 230 44 18 chr15 20330477 20330489 -65365265 - MIR SINE MIR -115 147 137 2344 101 0 0 chr15 20330502 20330810 -65364944 - AluSc SINE Alu -1 308 1 2161 82 3 73 chr15 20331473 20331788 -65363966 - AluSg SINE Alu -17 293 1 418 293 13 7 chr15 20332174 20332324 -65363430 + MIR SINE MIR 97 247 -15 2280 82 14 0 chr15 20333317 20333636 -65362118 - AluSp SINE Alu 0 323 1 1411 181 58 29 chr15 20333943 20334220 -65361534 - AluJb SINE Alu -26 286 2 580 198 62 62 chr15 20334277 20334326 -65361428 + MER104 DNA Tc2 16 64 -1834 2138 84 0 0 chr15 20334326 20334587 -65361167 - AluSc SINE Alu -14 295 35 580 198 62 62 chr15 20334587 20334699 -65361055 + MER104 DNA Tc2 63 177 -3 1811 125 55 14 chr15 20335570 20335859 -65359895 - AluSx SINE Alu -11 301 1 814 137 0 0 chr15 20336075 20336199 -65359555 - FRAM SINE Alu -15 161 38 2021 132 56 0 chr15 20336716 20337035 -65358719 + MER1B DNA MER1_type 1 337 0 2020 138 10 0 chr15 20337288 20337577 -65358177 - AluJb SINE Alu -18 294 3 1832 147 7 27 chr15 20337728 20338021 -65357733 + AluJb SINE Alu 1 287 -25 1780 127 4 4 chr15 20338531 20338783 -65356971 - AluSq SINE Alu -60 253 2 2184 119 0 7 chr15 20338930 20339240 -65356514 - AluSx SINE Alu -4 308 1 208 244 11 56 chr15 20340877 20340967 -65354787 + (CCCCAG)n Simple_repeat Simple_repeat 2 87 0 25 51 0 0 chr15 20341453 20341492 -65354262 + GC_rich Low_complexity Low_complexity 1 39 0 43350 34 22 4 chr15 20342117 20348145 -65347609 + L1PA3 LINE L1 20 6155 0 207 0 0 0 chr15 20348208 20348231 -65347523 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2226 111 3 0 chr15 20349021 20349319 -65346435 + AluSp SINE Alu 1 299 -14 2112 112 14 7 chr15 20349579 20349875 -65345879 - AluSq SINE Alu -15 298 1 1418 106 5 0 chr15 20349877 20350065 -65345689 - AluSg/x SINE Alu -12 300 112 2142 81 8 0 chr15 20400956 20401217 -65294537 + AluSx SINE Alu 39 301 -11 753 297 36 9 chr15 20401326 20401548 -65294206 - MIR SINE MIR 0 262 35 347 208 50 40 chr15 20401618 20401719 -65294035 + L2 LINE L2 3163 3264 -8 1547 156 0 124 chr15 20402041 20402215 -65293539 + AluJo SINE Alu 1 114 -198 2238 104 0 16 chr15 20402215 20402522 -65293232 + AluSg SINE Alu 1 302 -8 1547 156 0 124 chr15 20402522 20402686 -65293068 + AluJo SINE Alu 114 297 -15 354 261 22 0 chr15 20403119 20403211 -65292543 + MIR3 SINE MIR 98 191 -17 351 0 0 0 chr15 20403474 20403513 -65292241 + (TG)n Simple_repeat Simple_repeat 2 40 0 2256 103 3 19 chr15 20405808 20406119 -65289635 - AluSg SINE Alu 0 310 5 565 173 0 0 chr15 20406155 20406259 -65289495 + U13 snRNA snRNA 1 104 0 265 204 0 19 chr15 20407258 20407312 -65288442 + L2 LINE L2 3201 3253 -19 * 429 259 49 48 chr15 20407279 20407451 -65288303 - MIR3 SINE MIR -50 212 37 487 260 202 36 chr15 20407603 20407826 -65287928 - MIR SINE MIR 0 262 3 913 218 86 25 chr15 20409590 20409833 -65285921 - MIR SINE MIR -2 260 3 297 0 0 0 chr15 20411142 20411175 -65284579 + (CAG)n Simple_repeat Simple_repeat 1 33 0 350 256 51 34 chr15 20411731 20411848 -65283906 - MIR3 SINE MIR -7 201 83 2357 108 0 0 chr15 20412331 20412636 -65283118 - AluSx SINE Alu -7 305 1 1816 146 19 0 chr15 20412763 20413030 -65282724 - AluSx SINE Alu -2 310 39 2253 94 0 3 chr15 20413150 20413467 -65282287 - AluSg SINE Alu 0 316 1 272 265 26 43 chr15 20413584 20413633 -65282121 + MIR SINE MIR 118 166 -96 1817 147 0 15 chr15 20413633 20413905 -65281849 + AluSg SINE Alu 3 270 -40 272 265 26 43 chr15 20413905 20413972 -65281782 + MIR SINE MIR 166 232 -30 234 313 0 21 chr15 20414054 20414150 -65281604 + MIR SINE MIR 102 195 -67 304 303 22 0 chr15 20415868 20415957 -65279797 + MIR3 SINE MIR 111 201 -7 537 198 62 62 chr15 20416494 20416543 -65279211 + MER104 DNA Tc2 16 64 -1834 2162 84 0 0 chr15 20416543 20416804 -65278950 - AluSc SINE Alu -14 295 35 537 198 62 62 chr15 20416804 20416916 -65278838 + MER104 DNA Tc2 63 177 -3 1817 128 55 14 chr15 20417786 20418075 -65277679 - AluSx SINE Alu -11 301 1 1932 127 18 25 chr15 20418354 20418637 -65277117 - AluJb SINE Alu -31 281 1 380 277 84 26 chr15 20418745 20418900 -65276854 - MIR3 SINE MIR -31 177 14 520 341 133 8 chr15 20421699 20422048 -65273706 + L1 LINE L1 858 3199 -1231 578 180 99 0 chr15 20423027 20423171 -65272583 - MIR SINE MIR -10 252 93 408 254 23 39 chr15 20423741 20423871 -65271883 - MER94 DNA DNA 0 134 7 1668 175 0 3 chr15 20428943 20429235 -65266519 - AluJb SINE Alu -10 302 12 2123 105 0 10 chr15 20429266 20429571 -65266183 - AluSc SINE Alu -7 302 1 431 255 9 19 chr15 20429576 20429682 -65266072 - MIR SINE MIR -110 152 48 2037 110 3 17 chr15 20432144 20432443 -65263311 - AluSq SINE Alu -18 295 1 2173 107 0 0 chr15 20432468 20432776 -65262978 - AluSc SINE Alu -1 308 1 189 171 0 0 chr15 20432776 20432811 -65262943 - MIR SINE MIR -118 144 110 2091 76 3 73 chr15 20433437 20433752 -65262002 - AluSg SINE Alu -17 293 1 475 293 13 7 chr15 20434138 20434288 -65261466 + MIR SINE MIR 97 247 -15 533 269 47 21 chr15 20435043 20435277 -65260477 + L1M4 LINE L1 2509 2748 -3398 12912 122 37 27 chr15 20435287 20436239 -65259515 + Tigger1 DNA MER2_type 171 1112 -1306 2095 103 0 3 chr15 20436239 20436530 -65259224 - AluSq SINE Alu -13 300 11 12912 122 37 27 chr15 20436530 20436576 -65259178 + Tigger1 DNA MER2_type 1112 1156 -1262 1510 133 90 18 chr15 20436576 20436854 -65258900 + AluJb SINE Alu 1 298 -14 12912 122 37 27 chr15 20436854 20437912 -65257842 + Tigger1 DNA MER2_type 1156 2248 -170 2191 61 17 14 chr15 20437912 20438205 -65257549 - AluY SINE Alu -17 294 1 1307 220 0 14 chr15 20438205 20438491 -65257263 - AluJo SINE Alu -30 282 1 734 216 0 0 chr15 20438497 20438622 -65257132 - FLAM_C SINE Alu -7 126 2 1733 162 3 13 chr15 20438675 20438984 -65256770 - AluJb SINE Alu -6 306 1 184 315 0 0 chr15 20438992 20439046 -65256708 + L2 LINE L2 3256 3309 -4 1924 117 41 3 chr15 20439945 20440236 -65255518 + AluSx SINE Alu 1 302 -10 1894 138 3 0 chr15 20443221 20443517 -65252237 + AluSq SINE Alu 1 297 -16 34 0 0 0 chr15 20443517 20443551 -65252203 + AT_rich Low_complexity Low_complexity 1 34 0 2002 116 3 3 chr15 20444036 20444330 -65251424 - AluSc SINE Alu -15 294 1 200 255 0 0 chr15 20445544 20445591 -65250163 + GA-rich Low_complexity Low_complexity 2 48 0 1753 208 103 40 chr15 20445903 20446463 -65249291 + L2 LINE L2 2457 3063 -250 1945 104 6 50 chr15 20446463 20446780 -65248974 + AluSx SINE Alu 1 303 -9 1753 208 103 40 chr15 20446780 20446989 -65248765 + L2 LINE L2 3063 3258 -55 1658 180 27 0 chr15 20447011 20447311 -65248443 - AluJb SINE Alu 0 312 5 680 234 0 58 chr15 20447322 20447493 -65248261 - AluJo SINE Alu -25 287 127 1119 224 31 12 chr15 20447586 20447841 -65247913 - MLT1C LTR MaLR 0 467 208 218 191 0 48 chr15 20448009 20448051 -65247703 - MER5A DNA MER1_type -85 104 65 2189 97 0 0 chr15 20448052 20448340 -65247414 - AluSg SINE Alu -22 288 1 2102 61 41 10 chr15 20448350 20448644 -65247110 - AluY SINE Alu -8 303 1 1384 153 4 35 chr15 20448731 20448986 -65246768 - AluJb SINE Alu -55 257 11 584 192 42 0 chr15 20449009 20449129 -65246625 - FLAM_C SINE Alu -8 125 1 868 158 24 91 chr15 20449391 20449424 -65246330 - L1MB7 LINE L1 -19 6165 6131 405 0 0 0 chr15 20449424 20449469 -65246285 + (TG)n Simple_repeat Simple_repeat 2 46 0 1477 133 75 50 chr15 20449469 20449747 -65246007 - AluJb SINE Alu -27 285 1 868 158 24 91 chr15 20449747 20449779 -65245975 - L1MB7 LINE L1 -52 6132 6099 2151 101 3 16 chr15 20449779 20450095 -65245659 - AluSq SINE Alu -1 312 1 868 158 24 91 chr15 20450095 20450281 -65245473 - L1MB7 LINE L1 -85 6099 5929 769 225 33 11 chr15 20450565 20450747 -65245007 - L1ME3 LINE L1 -10 6152 5967 391 259 51 107 chr15 20451073 20451289 -65244465 + MIR SINE MIR 47 250 -12 252 246 0 0 chr15 20454251 20454320 -65241434 + CT-rich Low_complexity Low_complexity 1 69 0 394 103 0 52 chr15 20454321 20454379 -65241375 - LTR8 LTR ERV1 -88 603 549 1851 131 7 3 chr15 20454388 20454670 -65241084 - AluSx SINE Alu -25 287 5 370 237 52 21 chr15 20454783 20454880 -65240874 - L2 LINE L2 -5 3308 3209 1189 149 0 10 chr15 20454981 20455176 -65240578 - AluJo SINE Alu -25 287 95 192 254 111 0 chr15 20455176 20455239 -65240515 + L2 LINE L2 2339 2408 -906 398 107 0 0 chr15 20455380 20455436 -65240318 + Alu SINE Alu 1 56 -246 361 208 0 0 chr15 20455538 20455610 -65240144 + AluS SINE Alu 229 300 -1 2254 89 0 0 chr15 20456725 20457018 -65238736 - AluY SINE Alu -18 293 1 190 297 161 25 chr15 20457149 20457267 -65238487 - MIR SINE MIR -99 163 30 339 260 0 21 chr15 20457283 20457379 -65238375 - MLT1I LTR MaLR 0 409 316 1807 228 9 44 chr15 20457419 20457687 -65238067 + MER82 DNA MER2_type 1 248 -405 2273 94 0 0 chr15 20457687 20457984 -65237770 - AluSx SINE Alu -13 299 3 1807 228 9 44 chr15 20457984 20458167 -65237587 + MER82 DNA MER2_type 248 436 -217 1334 154 14 57 chr15 20459330 20459609 -65236145 + AluJo SINE Alu 14 280 -32 683 120 4 2 chr15 20459684 20459926 -65235828 + AluSx SINE Alu 1 291 -21 390 129 0 0 chr15 20460463 20460525 -65235229 + (CA)n Simple_repeat Simple_repeat 2 63 0 293 300 0 0 chr15 20460574 20460664 -65235090 + L1MC4 LINE L1 6614 6703 -1339 233 253 0 63 chr15 20460629 20460724 -65235030 - L1MC4 LINE L1 -1340 6702 6614 * 1952 117 0 14 chr15 20460739 20460914 -65234840 - AluSq SINE Alu -5 308 137 2118 108 0 25 chr15 20460914 20461230 -65234524 - AluSq SINE Alu -5 308 1 1952 117 0 14 chr15 20461230 20461337 -65234417 - AluSq SINE Alu -176 137 30 280 227 45 162 chr15 20462121 20462275 -65233479 - MIR SINE MIR -93 169 34 1700 150 26 26 chr15 20463324 20463630 -65232124 + AluJb SINE Alu 1 306 -6 576 337 75 39 chr15 20463974 20464416 -65231338 - L1M4 LINE L1 -6061 481 24 251 317 58 8 chr15 20464432 20464552 -65231202 - L1 LINE L1 -1127 5019 4894 1975 120 0 7 chr15 20464553 20464844 -65230910 + AluSx SINE Alu 1 289 -23 472 230 0 0 chr15 20464854 20464941 -65230813 + FRAM SINE Alu 17 103 -73 329 245 75 0 chr15 20565901 20565995 -65129759 - HsTC2 DNA Tc2 0 1898 1798 2076 108 0 0 chr15 20566655 20566923 -65128831 - AluSx SINE Alu -30 282 15 2435 93 0 0 chr15 20567673 20567973 -65127781 + AluSc SINE Alu 1 300 -9 1274 164 134 22 chr15 20568020 20568288 -65127466 + AluJo SINE Alu 1 298 -14 1361 160 143 0 chr15 20568289 20568527 -65127227 + AluJb SINE Alu 24 295 -17 2214 97 0 7 chr15 20568603 20568893 -65126861 + AluSx SINE Alu 1 288 -24 2465 77 0 0 chr15 20569191 20569491 -65126263 + AluSq SINE Alu 1 300 -13 386 267 127 0 chr15 20569499 20569649 -65126105 + MIR SINE MIR 71 239 -23 197 306 0 32 chr15 20569990 20570052 -65125702 - MER5B DNA MER1_type -104 74 15 446 244 36 65 chr15 20570542 20570710 -65125044 - L2 LINE L2 0 3313 3151 459 225 126 9 chr15 20570714 20570825 -65124929 + FLAM_A SINE Alu 1 124 -9 2635 40 0 0 chr15 20570836 20571133 -65124621 + AluY SINE Alu 1 297 -14 2139 106 0 11 chr15 20571138 20571421 -65124333 + AluSg SINE Alu 1 280 -30 890 117 21 163 chr15 20571466 20571522 -65124232 + L1MB3 LINE L1 5444 5506 -677 2282 78 27 0 chr15 20571522 20571818 -65123936 + AluSp SINE Alu 1 304 -9 890 117 21 163 chr15 20571818 20571936 -65123818 + L1MB3 LINE L1 5506 5639 -544 2075 131 3 16 chr15 20571936 20572248 -65123506 + AluSx SINE Alu 1 308 -4 2116 136 7 3 chr15 20572253 20572562 -65123192 + AluSx SINE Alu 1 310 -2 2259 88 0 0 chr15 20572568 20572851 -65122903 + AluY SINE Alu 1 283 -28 187 43 0 0 chr15 20572851 20572874 -65122880 + (TAAA)n Simple_repeat Simple_repeat 2 176 0 890 117 21 163 chr15 20572874 20572923 -65122831 + L1MB3 LINE L1 5594 5648 -535 744 220 105 31 chr15 20572926 20573117 -65122637 - MER6B DNA MER2_type -5 205 1 964 154 24 12 chr15 20573130 20573299 -65122455 + L1MB3 LINE L1 5679 5849 -334 2117 78 7 36 chr15 20573363 20573670 -65122084 + AluSq SINE Alu 1 298 -15 1250 207 3 10 chr15 20573682 20573981 -65121773 + AluJo SINE Alu 14 310 -2 2026 117 3 3 chr15 20574246 20574536 -65121218 - AluSx SINE Alu -22 290 1 1230 101 16 16 chr15 20575262 20575451 -65120303 - L1MA4A LINE L1 -64 6239 6051 213 139 0 0 chr15 20575456 20575499 -65120255 + (A)n Simple_repeat Simple_repeat 1 43 0 587 256 194 11 chr15 20575707 20576080 -65119674 + L1MC4a LINE L1 5524 5649 -472 1183 111 0 0 chr15 20576211 20576373 -65119381 - AluSg/x SINE Alu -16 294 133 675 287 100 17 chr15 20576640 20576870 -65118884 + MIR SINE MIR 2 250 -12 1116 271 31 3 chr15 20576876 20577103 -65118651 + L1ME1 LINE L1 5816 6056 -110 2124 112 0 7 chr15 20577103 20577407 -65118347 - AluSx SINE Alu -10 302 1 1116 271 31 3 chr15 20577407 20577500 -65118254 + L1ME1 LINE L1 6056 6145 -21 1621 161 18 3 chr15 20577501 20577786 -65117968 - AluJb SINE Alu -23 289 1 2086 178 55 29 chr15 20577787 20578140 -65117614 - L1M4 LINE L1 -447 5731 5362 2246 88 7 0 chr15 20578140 20578448 -65117306 - AluSx SINE Alu 0 312 3 2086 178 55 29 chr15 20578448 20578549 -65117205 - L1M4 LINE L1 -816 5362 5265 1794 156 0 3 chr15 20578583 20578878 -65116876 + AluJb SINE Alu 1 294 -18 2166 121 0 0 chr15 20578885 20579198 -65116556 + AluSq SINE Alu 1 313 0 1369 93 25 5 chr15 20579200 20579404 -65116350 + L1MB8 LINE L1 5742 5949 -229 2058 88 4 4 chr15 20579412 20579723 -65116031 + AluSg SINE Alu 8 318 0 1191 123 0 0 chr15 20579723 20579894 -65115860 + AluSq SINE Alu 133 303 -10 1486 184 28 18 chr15 20580004 20580287 -65115467 - AluJb SINE Alu -26 286 1 851 143 8 0 chr15 20580290 20580423 -65115331 - AluJo SINE Alu -178 134 1 1022 230 22 9 chr15 20580513 20580739 -65115015 - MIR SINE MIR -21 241 13 2311 57 0 0 chr15 20581480 20581807 -65113947 + AluY SINE Alu 1 327 0 23 0 0 0 chr15 20582017 20582040 -65113714 + AT_rich Low_complexity Low_complexity 1 23 0 621 224 236 69 chr15 20582160 20582241 -65113513 - HAL1b LINE L1 -7 1341 1275 2249 73 7 0 chr15 20582241 20582529 -65113225 + AluSg1 SINE Alu 1 290 -19 621 224 236 69 chr15 20582529 20582879 -65112875 - HAL1b LINE L1 -73 1275 838 1557 93 0 0 chr15 20582883 20583088 -65112666 - AluSg/x SINE Alu -13 297 93 1924 114 11 4 chr15 20583143 20583416 -65112338 - AluSx SINE Alu -37 275 1 1333 207 3 39 chr15 20583819 20584128 -65111626 - AluJo SINE Alu -14 298 1 450 187 48 72 chr15 20584129 20584218 -65111536 + L1MB7 LINE L1 6023 6108 -76 1825 131 7 23 chr15 20584218 20584354 -65111400 + AluSx SINE Alu 1 138 -174 2006 106 3 7 chr15 20584354 20584647 -65111107 + AluSg1 SINE Alu 1 292 -17 1825 131 7 23 chr15 20584647 20584815 -65110939 + AluSx SINE Alu 138 300 -12 450 187 48 72 chr15 20584815 20584891 -65110863 + L1MB7 LINE L1 6108 6184 0 2073 105 7 3 chr15 20585028 20585334 -65110420 - AluSp SINE Alu -6 307 1 264 279 124 70 chr15 20585457 20585494 -65110260 + L2 LINE L2 1759 1793 -1521 1688 154 7 27 chr15 20585494 20585793 -65109961 + AluJo SINE Alu 5 297 -15 264 279 124 70 chr15 20585793 20586085 -65109669 + L2 LINE L2 1793 2106 -1208 1948 155 70 6 chr15 20586447 20586788 -65108966 - MLT1A1 LTR MaLR -2 363 1 2206 76 7 13 chr15 20586825 20587127 -65108627 + AluY SINE Alu 1 300 -11 2337 74 3 0 chr15 20588097 20588396 -65107358 + AluSp SINE Alu 2 301 -12 1923 134 0 0 chr15 20589136 20589419 -65106335 - AluSx SINE Alu -29 283 1 279 405 82 9 chr15 20589731 20589963 -65105791 - L2 LINE L2 -342 2972 2724 790 107 90 0 chr15 20589964 20590086 -65105668 - MER85 DNA T2_type -6 133 1 2046 126 3 0 chr15 20590332 20590633 -65105121 - AluSq SINE Alu -11 302 1 323 302 40 40 chr15 20590658 20590784 -65104970 - MIR3 SINE MIR -48 160 35 1599 170 3 18 chr15 20590974 20591257 -65104497 + AluJo SINE Alu 15 293 -19 25 0 0 0 chr15 20591998 20592023 -65103731 + AT_rich Low_complexity Low_complexity 1 25 0 2287 99 0 6 chr15 20592932 20593246 -65102508 + AluSp SINE Alu 1 312 -1 2079 110 20 0 chr15 20593364 20593663 -65102091 + AluSg SINE Alu 5 309 -1 838 114 14 57 chr15 20593689 20593829 -65101925 + AluJo SINE Alu 1 134 -178 2083 87 7 7 chr15 20594614 20594902 -65100852 + AluSq SINE Alu 9 296 -17 359 198 0 6 chr15 20595057 20595129 -65100625 - AluSp SINE Alu -107 196 136 441 75 0 0 chr15 20595964 20596017 -65099737 - AluSg/x SINE Alu -142 168 116 2013 80 69 0 chr15 20596524 20596813 -65098941 - AluSp SINE Alu -4 309 1 499 209 310 6 chr15 20597454 20597612 -65098142 + MER3 DNA MER1_type 4 209 0 221 378 54 0 chr15 20598312 20598423 -65097331 + MER5B DNA MER1_type 59 175 -3 2002 81 10 52 chr15 20599266 20599576 -65096178 + AluY SINE Alu 1 297 -14 1881 154 0 3 chr15 20599584 20599877 -65095877 + AluSx SINE Alu 1 292 -20 1225 203 128 8 chr15 20600715 20600981 -65094773 + AluJo SINE Alu 1 298 -4 335 131 98 0 chr15 20600981 20601042 -65094712 + FLAM_A SINE Alu 57 123 -10 2400 64 0 0 chr15 20603821 20604119 -65091635 - AluY SINE Alu -13 298 1 1023 148 12 0 chr15 20604248 20604410 -65091344 + FRAM SINE Alu 1 161 -15 306 0 0 0 chr15 20604438 20604472 -65091282 + (A)n Simple_repeat Simple_repeat 1 34 0 1926 127 7 7 chr15 20604474 20604765 -65090989 + AluSx SINE Alu 1 291 -21 1235 244 124 20 chr15 20604768 20605226 -65090528 - L2 LINE L2 -1536 1778 1273 1558 197 65 34 chr15 20605269 20605344 -65090410 + Charlie4a DNA MER1_type 1 72 -1889 1618 169 3 3 chr15 20605344 20605649 -65090105 - AluJo SINE Alu 0 305 1 1558 197 65 34 chr15 20605649 20605988 -65089766 + Charlie4a DNA MER1_type 72 429 -79 2237 69 0 16 chr15 20605991 20606297 -65089457 - AluY SINE Alu -9 302 2 1112 143 24 38 chr15 20606298 20606507 -65089247 - L1MB2 LINE L1 -42 6129 5924 3706 164 30 8 chr15 20606507 20607129 -65088625 - MER44D DNA MER2_type 0 605 98 1458 146 13 0 chr15 20607129 20607362 -65088392 + AluSx SINE Alu 1 236 -76 230 0 0 32 chr15 20607381 20607412 -65088342 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1642 137 39 0 chr15 20607660 20607915 -65087839 - AluSq SINE Alu -48 265 1 2134 109 3 0 chr15 20607919 20608222 -65087532 - AluSx SINE Alu -8 304 1 1838 241 60 47 chr15 20608236 20608875 -65086879 - HAL1 LINE L1 -245 2262 1616 1239 85 0 6 chr15 20608877 20609042 -65086712 - AluSc SINE Alu -11 298 135 2104 125 0 0 chr15 20609042 20609339 -65086415 - AluSc SINE Alu -12 297 1 2043 106 7 14 chr15 20609342 20609635 -65086119 - AluSx SINE Alu -21 291 1 1457 181 20 43 chr15 20609641 20609800 -65085954 - AluJo SINE Alu -20 292 142 1808 117 3 76 chr15 20609800 20610116 -65085638 - AluSg SINE Alu -17 293 1 1457 181 20 43 chr15 20610116 20610255 -65085499 - AluJo SINE Alu -170 142 1 783 226 92 0 chr15 20610257 20610474 -65085280 - HAL1 LINE L1 -939 1568 1332 29 0 0 0 chr15 20610477 20610506 -65085248 + AT_rich Low_complexity Low_complexity 1 29 0 2186 57 43 0 chr15 20610508 20610789 -65084965 - AluY SINE Alu -18 293 1 2029 128 0 0 chr15 20610797 20611086 -65084668 - AluSx SINE Alu -23 289 1 2143 119 0 0 chr15 20611090 20611402 -65084352 - AluSx SINE Alu 0 312 1 922 210 0 5 chr15 20611412 20611598 -65084156 - FRAM SINE Alu 0 176 1 2173 122 0 0 chr15 20611727 20612039 -65083715 - AluSx SINE Alu 0 312 1 474 243 70 92 chr15 20612050 20612167 -65083587 - HAL1 LINE L1 -1599 908 795 2285 96 0 0 chr15 20612167 20612468 -65083286 + AluY SINE Alu 1 301 -10 474 243 70 92 chr15 20612468 20612535 -65083219 - HAL1 LINE L1 -1712 795 728 180 271 17 0 chr15 20612552 20612611 -65083143 + L2 LINE L2 2896 2955 -317 356 322 96 46 chr15 20612633 20613027 -65082727 - MLT1K LTR MaLR -18 570 157 2327 50 10 10 chr15 20613030 20613332 -65082422 - AluY SINE Alu -9 302 1 2051 111 3 3 chr15 20613434 20613731 -65082023 - AluSp SINE Alu -16 297 1 1726 157 7 17 chr15 20613735 20613900 -65081854 - AluJo SINE Alu -15 297 135 2060 127 3 3 chr15 20613900 20614208 -65081546 - AluSx SINE Alu -4 308 1 1726 157 7 17 chr15 20614208 20614342 -65081412 - AluJo SINE Alu -177 135 1 887 79 0 0 chr15 20614344 20614458 -65081296 - AluY SINE Alu -197 114 1 629 101 0 0 chr15 20614510 20614599 -65081155 - AluJ/FRAM SINE Alu -8 304 216 269 310 92 0 chr15 20614638 20614725 -65081029 + L2 LINE L2 2615 2709 -605 425 312 51 0 chr15 20614749 20614887 -65080867 + MIR SINE MIR 48 192 -70 2478 47 0 0 chr15 20614900 20615201 -65080553 + AluY SINE Alu 1 301 -10 298 262 107 41 chr15 20615399 20615521 -65080233 + L2 LINE L2 2924 3053 -219 1847 110 20 33 chr15 20615758 20615893 -65079861 + AluSx SINE Alu 1 136 -176 2191 100 0 3 chr15 20615893 20616192 -65079562 + AluSx SINE Alu 3 300 -12 1847 110 20 33 chr15 20616192 20616357 -65079397 + AluSx SINE Alu 136 297 -15 234 160 0 0 chr15 20616399 20616449 -65079305 + GA-rich Low_complexity Low_complexity 2 51 0 1931 140 0 10 chr15 20616514 20616814 -65078940 + AluSq SINE Alu 1 297 -16 1947 115 4 0 chr15 20616814 20617093 -65078661 + AluSg SINE Alu 1 280 -30 803 176 52 0 chr15 20617106 20617259 -65078495 + AluJb SINE Alu 136 296 -16 297 75 0 0 chr15 20617259 20617299 -65078455 + (TA)n Simple_repeat Simple_repeat 2 41 0 1655 134 84 0 chr15 20617389 20617651 -65078103 - AluSg SINE Alu -26 284 1 213 39 0 0 chr15 20617702 20617728 -65078026 + (T)n Simple_repeat Simple_repeat 1 26 0 674 178 34 0 chr15 20618296 20618414 -65077340 + FLAM_C SINE Alu 2 123 -20 208 380 50 30 chr15 20619685 20619785 -65075969 - MIR3 SINE MIR -93 115 14 512 176 108 10 chr15 20619792 20619894 -65075860 + MER6B DNA MER2_type 4 115 -161 1255 130 8 20 chr15 20619894 20620133 -65075621 - AluJb SINE Alu -9 303 1 565 224 0 9 chr15 20620133 20620240 -65075514 + MER6B DNA MER2_type 102 207 -3 2168 109 3 13 chr15 20620817 20621129 -65074625 - AluSq SINE Alu 0 313 5 221 217 22 0 chr15 20621145 20621191 -65074563 + L2 LINE L2 3215 3261 -11 201 315 146 0 chr15 20623410 20623499 -65072255 - MIR SINE MIR -67 141 40 227 327 168 9 chr15 20623545 20623652 -65072102 - MIR SINE MIR -43 219 96 2362 104 7 0 chr15 20624255 20624553 -65071201 - AluSx SINE Alu -12 300 1 1788 104 61 32 chr15 20624707 20624987 -65070767 - AluSx SINE Alu -19 293 6 1943 115 30 20 chr15 20624993 20625288 -65070466 - AluSx SINE Alu -8 304 7 2056 140 0 23 chr15 20627067 20627375 -65068379 - AluJb SINE Alu -11 301 1 415 259 86 11 chr15 20627975 20628129 -65067625 + MIR3 SINE MIR 41 204 -4 600 313 40 0 chr15 20634066 20634242 -65061512 + MIR SINE MIR 2 184 -78 1677 190 10 52 chr15 20634246 20634652 -65061102 + L1MB7 LINE L1 5514 5902 -282 528 65 9 157 chr15 20634666 20634722 -65061032 + L1MB7 LINE L1 6086 6120 -64 2361 119 0 0 chr15 20634722 20635033 -65060721 + AluSx SINE Alu 2 312 0 528 65 9 157 chr15 20635033 20635084 -65060670 + L1MB7 LINE L1 6120 6177 -7 421 255 105 13 chr15 20636666 20636819 -65058935 + MIR SINE MIR 10 176 -86 880 159 0 0 chr15 20636851 20636983 -65058771 - FLAM_C SINE Alu -1 132 1 270 276 133 19 chr15 20638168 20638273 -65057481 + MIR SINE MIR 44 160 -102 210 71 0 0 chr15 20638877 20638905 -65056849 + (GGA)n Simple_repeat Simple_repeat 2 29 0 2503 94 3 0 chr15 20639106 20639415 -65056339 + AluSq SINE Alu 2 311 -2 2052 132 67 14 chr15 20639638 20639994 -65055760 + THE1C LTR MaLR 1 375 0 183 229 0 42 chr15 20640106 20640154 -65055600 + MIR SINE MIR 20 65 -143 290 246 200 0 chr15 20640274 20640384 -65055370 + MIR SINE MIR 119 250 -12 458 211 155 28 chr15 20641354 20641496 -65054258 + MIR SINE MIR 47 206 -56 2327 104 0 3 chr15 20642519 20642816 -65052938 - AluSg SINE Alu -13 297 2 2087 145 27 69 chr15 20642825 20643232 -65052522 + MLT1B LTR MaLR 1 390 0 869 132 7 49 chr15 20644466 20644610 -65051144 + FRAM SINE Alu 29 166 -10 242 283 121 0 chr15 20644658 20644757 -65050997 - Charlie8 DNA MER1_type -2303 114 4 273 257 55 73 chr15 20645305 20645414 -65050340 - L2 LINE L2 -27 3245 3139 2006 121 10 41 chr15 20646266 20646580 -65049174 - AluSx SINE Alu -8 304 1 2408 96 0 0 chr15 20647037 20647338 -65048416 - AluSx SINE Alu -11 301 1 187 237 0 0 chr15 20648385 20648423 -65047331 - L2 LINE L2 -9 3304 3267 2611 59 0 0 chr15 20648496 20648802 -65046952 - AluY SINE Alu -5 306 1 882 172 53 0 chr15 20649278 20649429 -65046325 - AluJo/FRAM SINE Alu -7 295 137 1221 96 102 0 chr15 20649429 20649595 -65046159 - AluSc SINE Alu -14 295 113 2178 89 0 17 chr15 20649695 20649988 -65045766 - AluY SINE Alu -23 288 1 1405 55 0 0 chr15 20650002 20650166 -65045588 - AluY SINE Alu -20 291 128 2124 64 35 18 chr15 20650172 20650455 -65045299 - AluSg SINE Alu -22 288 1 819 244 48 19 chr15 20655064 20655273 -65040481 + MIR SINE MIR 34 248 -14 2289 108 0 3 chr15 20656624 20656919 -65038835 - AluSg SINE Alu -16 294 1 2355 88 0 7 chr15 20657282 20657577 -65038177 - AluSc SINE Alu -16 293 1 245 231 200 10 chr15 20657990 20658089 -65037665 - MIR SINE MIR -91 117 38 2092 121 10 26 chr15 20661513 20661820 -65033934 + AluSg SINE Alu 1 302 -8 2235 101 7 26 chr15 20661822 20662129 -65033625 + AluSg SINE Alu 3 303 -7 826 168 0 0 chr15 20662135 20662254 -65033500 + FLAM_C SINE Alu 1 119 -24 1541 171 20 30 chr15 20662334 20662632 -65033122 + AluJo SINE Alu 1 295 -17 2280 86 20 13 chr15 20662736 20663037 -65032717 + AluSq SINE Alu 1 303 -10 1472 75 16 5 chr15 20663100 20663286 -65032468 + AluY SINE Alu 1 188 -123 187 97 161 0 chr15 20664490 20664521 -65031233 - L2 LINE L2 -858 2456 2421 2231 114 0 0 chr15 20664842 20665140 -65030614 - AluY SINE Alu -13 298 1 911 178 22 43 chr15 20665168 20665353 -65030401 - AluJb SINE Alu -2 310 130 2145 110 4 0 chr15 20665821 20666131 -65029623 + AluSg SINE Alu 1 311 0 2035 120 0 0 chr15 20666297 20666564 -65029190 + AluSx SINE Alu 1 267 -45 1715 127 16 0 chr15 20666688 20666941 -65028813 + AluSx SINE Alu 42 298 -14 749 259 156 36 chr15 20666960 20667451 -65028303 + MLT1H LTR MaLR 5 589 -6 2296 96 7 7 chr15 20668245 20668546 -65027208 - AluSg SINE Alu -9 301 1 2269 95 14 0 chr15 20668708 20669002 -65026752 + AluSp SINE Alu 1 298 -15 2091 132 7 0 chr15 20669921 20670210 -65025544 - AluJb SINE Alu -17 295 5 2237 115 3 7 chr15 20670374 20670670 -65025084 - AluSx SINE Alu -17 295 1 1527 166 87 85 chr15 20670686 20670970 -65024784 + MER119 DNA MER1_type 130 417 -166 2465 84 3 6 chr15 20670970 20671281 -65024473 - AluSg SINE Alu 0 310 1 1527 166 87 85 chr15 20671281 20671442 -65024312 + MER119 DNA MER1_type 417 576 -7 527 232 49 14 chr15 20671731 20671873 -65023881 + MIR SINE MIR 59 205 -57 2499 79 0 0 chr15 20672752 20673055 -65022699 - AluY SINE Alu -8 303 1 453 282 103 0 chr15 20673062 20673236 -65022518 + L1M4 LINE L1 3587 3778 -2368 216 67 0 0 chr15 20673241 20673271 -65022483 + (A)n Simple_repeat Simple_repeat 1 30 0 1528 199 24 20 chr15 20673347 20673639 -65022115 + AluJo SINE Alu 1 293 -19 1975 144 0 27 chr15 20673646 20673931 -65021823 + AluSx SINE Alu 1 279 -33 217 0 0 0 chr15 20673931 20673955 -65021799 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1975 144 0 27 chr15 20673955 20673968 -65021786 + AluSx SINE Alu 279 291 -21 839 155 0 40 chr15 20674030 20674178 -65021576 - FLAM_C SINE Alu -1 142 1 2209 109 0 10 chr15 20674256 20674568 -65021186 - AluSg SINE Alu -1 309 1 1109 152 0 0 chr15 20674573 20674737 -65021017 - AluSg/x SINE Alu -4 308 145 2145 135 0 0 chr15 20674578 20674881 -65020873 - AluSx SINE Alu -9 303 1 670 226 112 60 chr15 20674919 20675233 -65020521 - L1ME3A LINE L1 -208 5962 5633 490 269 93 19 chr15 20675671 20675928 -65019826 - L1MC4a LINE L1 -1902 5906 5631 21 36 0 0 chr15 20676138 20676166 -65019588 + AT_rich Low_complexity Low_complexity 1 28 0 2249 107 0 3 chr15 20676254 20676554 -65019200 - AluSx SINE Alu -13 299 1 1405 151 0 10 chr15 20677092 20677298 -65018456 + AluJo SINE Alu 1 204 -108 28 0 0 0 chr15 20677301 20677329 -65018425 + AT_rich Low_complexity Low_complexity 1 28 0 237 205 181 12 chr15 20677329 20677412 -65018342 + MER112 DNA MER1_type 49 145 -115 1306 131 4 72 chr15 20677412 20677648 -65018106 - AluSg/x SINE Alu -8 304 85 1589 158 36 0 chr15 20677799 20678052 -65017702 + AluJo SINE Alu 4 265 -47 1589 173 43 0 chr15 20678145 20678423 -65017331 - AluJb SINE Alu -22 290 1 1470 160 26 77 chr15 20679125 20679438 -65016316 + AluJo SINE Alu 1 297 -15 2509 72 0 3 chr15 20680289 20680596 -65015158 - AluY SINE Alu -5 306 1 2206 109 3 0 chr15 20680690 20680983 -65014771 - AluSg SINE Alu -16 294 1 2309 110 0 3 chr15 20681061 20681371 -65014383 + AluSc SINE Alu 1 309 0 2136 139 3 3 chr15 20681423 20681733 -65014021 - AluSx SINE Alu -2 310 1 2084 132 7 0 chr15 20681834 20682130 -65013624 + AluSx SINE Alu 1 298 -14 827 252 159 39 chr15 20682149 20682640 -65013114 + MLT1H LTR MaLR 5 589 -6 2271 100 3 7 chr15 20683434 20683734 -65012020 - AluSg1 SINE Alu -10 299 1 2252 95 14 0 chr15 20683897 20684191 -65011563 + AluSp SINE Alu 1 298 -15 2067 132 7 0 chr15 20685110 20685399 -65010355 - AluJb SINE Alu -17 295 5 2219 115 3 7 chr15 20685563 20685859 -65009895 - AluSx SINE Alu -17 295 1 1655 163 87 87 chr15 20685875 20686160 -65009594 + MER119 DNA MER1_type 130 417 -166 2442 84 3 6 chr15 20686160 20686471 -65009283 - AluSg SINE Alu 0 310 1 1655 163 87 87 chr15 20686471 20686632 -65009122 + MER119 DNA MER1_type 416 576 -7 470 232 49 14 chr15 20686921 20687063 -65008691 + MIR SINE MIR 59 205 -57 2486 79 0 0 chr15 20687942 20688245 -65007509 - AluY SINE Alu -8 303 1 231 282 103 0 chr15 20688252 20688426 -65007328 + L1ME LINE L1 3587 3778 -2368 216 67 0 0 chr15 20688431 20688461 -65007293 + (A)n Simple_repeat Simple_repeat 1 30 0 1491 199 24 20 chr15 20688537 20688829 -65006925 + AluJo SINE Alu 1 293 -19 1953 144 0 27 chr15 20688836 20689158 -65006596 + AluSx SINE Alu 1 312 0 824 132 0 69 chr15 20689224 20689368 -65006386 - AluJo SINE Alu -178 134 1 2001 123 0 7 chr15 20689449 20689759 -65005995 - AluSx SINE Alu 0 308 1 2250 99 3 3 chr15 20689792 20690095 -65005659 + AluY SINE Alu 1 303 -8 1301 101 6 0 chr15 20690095 20690273 -65005481 + AluY SINE Alu 133 311 0 2018 140 0 10 chr15 20690528 20690835 -65004919 - AluJb SINE Alu -8 304 1 1081 128 39 54 chr15 20690847 20691050 -65004704 - AluJo SINE Alu -27 285 86 456 259 139 27 chr15 20691068 20691369 -65004385 + L1ME LINE L1 4377 4711 -1435 265 213 113 0 chr15 20691536 20691616 -65004138 + L1P LINE L1 4919 5007 -1139 229 277 0 20 chr15 20691945 20692046 -65003708 + L1ME LINE L1 5304 5402 -957 563 89 0 0 chr15 20692067 20692146 -65003608 + AluSp/q SINE Alu 224 302 -11 465 236 36 50 chr15 20692146 20692286 -65003468 + L1ME LINE L1 5393 5530 -632 2340 106 0 0 chr15 20692297 20692600 -65003154 - AluSx SINE Alu -9 303 1 1383 167 42 77 chr15 20692611 20692752 -65003002 - AluJo SINE Alu -31 281 154 2305 79 7 7 chr15 20692752 20693063 -65002691 - AluSq SINE Alu 0 313 1 1383 167 42 77 chr15 20693063 20693208 -65002546 - AluJo SINE Alu -158 154 5 2044 127 3 3 chr15 20693304 20693603 -65002151 - AluSx SINE Alu -13 299 1 429 141 0 13 chr15 20693773 20693851 -65001903 + FLAM_A SINE Alu 31 107 -35 230 228 53 9 chr15 20694069 20694183 -65001571 + (TA)n Simple_repeat Simple_repeat 1 119 0 1626 135 87 0 chr15 20695249 20695515 -65000239 - AluSx SINE Alu -23 289 1 1066 88 0 7 chr15 20695515 20695651 -65000103 - AluSq/x SINE Alu -177 135 1 21 0 0 0 chr15 20695720 20695741 -65000013 + AT_rich Low_complexity Low_complexity 1 21 0 1746 161 11 0 chr15 20696108 20696382 -64999372 - AluJb SINE Alu -35 277 1 2329 75 14 3 chr15 20696506 20696799 -64998955 - AluSq SINE Alu -17 296 1 2165 111 0 10 chr15 20697474 20697771 -64997983 - AluSc SINE Alu -15 294 1 2289 99 3 0 chr15 20698824 20699126 -64996628 - AluSg SINE Alu -7 303 1 2520 72 3 0 chr15 20699426 20699732 -64996022 - AluY SINE Alu -4 307 1 479 172 95 0 chr15 20699799 20699915 -64995839 - MER5A DNA MER1_type -2 187 61 237 132 0 0 chr15 20699915 20699953 -64995801 + (T)n Simple_repeat Simple_repeat 1 38 0 593 184 0 0 chr15 20699994 20700092 -64995662 - AluJ/FLAM SINE Alu -213 99 2 288 206 73 0 chr15 20700094 20700162 -64995592 - MER5A DNA MER1_type -116 73 1 2415 83 3 0 chr15 20700207 20700508 -64995246 + AluSp SINE Alu 1 302 -11 1673 136 0 19 chr15 20700603 20700691 -64995063 + AluSx SINE Alu 49 137 -175 1941 139 0 35 chr15 20700691 20701008 -64994746 + AluSx SINE Alu 1 306 -6 1673 136 0 19 chr15 20701008 20701176 -64994578 + AluSx SINE Alu 137 300 -12 1032 148 5 42 chr15 20701176 20701365 -64994389 - AluJo SINE Alu -130 182 1 2104 122 0 3 chr15 20701372 20701660 -64994094 - AluSx SINE Alu -19 293 7 447 182 202 0 chr15 20701660 20701759 -64993995 - HAL1 LINE L1 -752 1755 1637 584 98 12 0 chr15 20701760 20701842 -64993912 - AluSg SINE Alu -11 299 217 1000 122 0 0 chr15 20701842 20701973 -64993781 - AluSg SINE Alu -179 131 1 792 217 71 0 chr15 20701975 20702173 -64993581 - HAL1 LINE L1 -866 1641 1430 761 185 73 20 chr15 20702173 20702324 -64993430 + FRAM SINE Alu 1 157 -19 2072 135 30 0 chr15 20702359 20702662 -64993092 - AluSx SINE Alu 0 312 1 1888 129 20 20 chr15 20702669 20702972 -64992782 - AluSx SINE Alu -3 309 7 362 151 43 108 chr15 20702981 20703074 -64992680 - HAL1 LINE L1 -1122 1385 1299 668 211 0 0 chr15 20703101 20703215 -64992539 - FRAM SINE Alu -23 153 40 2437 80 0 3 chr15 20703232 20703544 -64992210 - AluY SINE Alu 0 311 1 2242 108 0 16 chr15 20703546 20703860 -64991894 - AluSc SINE Alu 0 309 1 241 219 172 42 chr15 20703866 20704104 -64991650 - HAL1 LINE L1 -1210 1297 1029 2284 102 0 35 chr15 20704224 20704537 -64991217 - AluSq SINE Alu -11 302 1 929 148 0 0 chr15 20704537 20704672 -64991082 - AluSq/x SINE Alu -178 135 1 1388 179 13 84 chr15 20705109 20705417 -64990337 + AluJo SINE Alu 1 286 -26 2343 104 7 0 chr15 20705577 20705884 -64989870 - AluSq SINE Alu -4 309 1 499 97 0 14 chr15 20705886 20705958 -64989796 - AluJ/FRAM SINE Alu -16 296 226 351 278 57 66 chr15 20706526 20706677 -64989077 - MIR SINE MIR -6 256 106 2100 126 6 31 chr15 20706677 20706994 -64988760 + AluSp SINE Alu 1 309 -4 351 278 57 66 chr15 20706994 20707054 -64988700 - MIR SINE MIR -156 106 47 184 290 14 58 chr15 20707489 20707558 -64988196 + MIR SINE MIR 49 114 -148 26 50 0 0 chr15 20707592 20707632 -64988122 + AT_rich Low_complexity Low_complexity 1 40 0 2541 62 7 0 chr15 20707793 20708100 -64987654 - AluY SINE Alu -2 309 1 2145 135 0 0 chr15 20708110 20708413 -64987341 - AluSx SINE Alu -9 303 1 680 223 112 60 chr15 20708451 20708765 -64986989 - L1ME3A LINE L1 -208 5962 5633 490 269 93 19 chr15 20709203 20709460 -64986294 - L1MC4a LINE L1 -1902 5906 5631 21 36 0 0 chr15 20709670 20709698 -64986056 + AT_rich Low_complexity Low_complexity 1 28 0 2249 107 0 3 chr15 20709786 20710086 -64985668 - AluSx SINE Alu -13 299 1 1405 151 0 10 chr15 20710624 20710830 -64984924 + AluJo SINE Alu 1 204 -108 28 0 0 0 chr15 20710833 20710861 -64984893 + AT_rich Low_complexity Low_complexity 1 28 0 514 214 112 31 chr15 20710861 20710944 -64984810 + MER112 DNA MER1_type 49 124 -136 1954 129 3 68 chr15 20710944 20711123 -64984631 - AluSx SINE Alu -8 304 154 2166 104 30 3 chr15 20711123 20711421 -64984333 - AluY SINE Alu -5 306 1 1954 129 3 68 chr15 20711421 20711566 -64984188 - AluSx SINE Alu -158 154 1 514 214 112 31 chr15 20711566 20711678 -64984076 + MER112 DNA MER1_type 124 260 0 396 233 62 88 chr15 20711701 20711783 -64983971 + MIR SINE MIR 41 124 -138 2125 115 0 0 chr15 20711783 20712071 -64983683 - AluSg SINE Alu 0 310 23 396 233 62 88 chr15 20712071 20712181 -64983573 + MIR SINE MIR 124 228 -34 349 303 35 35 chr15 20712180 20712322 -64983432 - L2 LINE L2 0 3313 3172 * 227 200 160 0 chr15 20712822 20712872 -64982882 + L2 LINE L2 3256 3313 0 1863 179 10 0 chr15 20712941 20713248 -64982506 - AluJb SINE Alu -2 310 1 23 33 0 0 chr15 20713292 20713322 -64982432 + AT_rich Low_complexity Low_complexity 1 30 0 491 284 70 82 chr15 20713437 20713768 -64981986 - L1MC4a LINE L1 -457 5664 5338 2178 93 21 7 chr15 20714263 20714554 -64981200 + AluSx SINE Alu 1 295 -17 1614 64 0 81 chr15 20714555 20714790 -64980964 + AluY SINE Alu 1 216 -95 2245 104 3 3 chr15 20714872 20715179 -64980575 + AluSp SINE Alu 1 307 -6 466 187 48 72 chr15 20715316 20715392 -64980362 - L1MB7 LINE L1 0 6184 6108 1945 131 7 23 chr15 20715392 20715560 -64980194 - AluSx SINE Alu -12 300 138 2129 106 3 7 chr15 20715560 20715853 -64979901 - AluSg1 SINE Alu -17 292 1 1945 131 7 23 chr15 20715853 20715989 -64979765 - AluSx SINE Alu -174 138 1 466 187 48 72 chr15 20715989 20716078 -64979676 - L1MB7 LINE L1 -76 6108 6023 1442 204 3 39 chr15 20716079 20716388 -64979366 + AluJo SINE Alu 1 298 -14 2047 114 11 4 chr15 20716791 20717064 -64978690 + AluSx SINE Alu 1 275 -37 1644 93 0 0 chr15 20717119 20717324 -64978430 + AluSg/x SINE Alu 93 297 -13 366 219 27 75 chr15 20717614 20717678 -64978076 + HAL1b LINE L1 1203 1269 -79 2379 73 7 0 chr15 20717678 20717966 -64977788 - AluSg1 SINE Alu -19 290 1 366 219 27 75 chr15 20717966 20718047 -64977707 + HAL1b LINE L1 1269 1341 -7 23 0 0 0 chr15 20718167 20718190 -64977564 + AT_rich Low_complexity Low_complexity 1 23 0 2442 57 0 0 chr15 20718400 20718727 -64977027 - AluY SINE Alu 0 327 1 923 230 22 9 chr15 20719468 20719694 -64976060 + MIR SINE MIR 13 241 -21 904 143 8 0 chr15 20719784 20719917 -64975837 + AluJo SINE Alu 1 134 -178 1599 184 28 18 chr15 20719920 20720203 -64975551 + AluJb SINE Alu 1 286 -26 1260 123 0 0 chr15 20720313 20720484 -64975270 - AluSq SINE Alu -10 303 133 291 54 0 0 chr15 20720484 20720521 -64975233 + (TTG)n Simple_repeat Simple_repeat 3 39 0 2216 88 4 0 chr15 20720522 20720794 -64974960 - AluSg SINE Alu -30 280 8 1380 93 25 5 chr15 20720802 20721006 -64974748 - L1MB8 LINE L1 -229 5949 5742 2288 121 0 0 chr15 20721008 20721321 -64974433 - AluSq SINE Alu 0 313 1 1912 156 0 3 chr15 20721328 20721623 -64974131 - AluJb SINE Alu -18 294 1 2109 178 55 29 chr15 20721657 20721758 -64973996 + L1M4 LINE L1 5265 5362 -816 2445 78 7 0 chr15 20721758 20722066 -64973688 + AluSx SINE Alu 3 312 0 2109 178 55 29 chr15 20722066 20722419 -64973335 + L1M4 LINE L1 5362 5731 -447 1732 161 18 3 chr15 20722420 20722705 -64973049 + AluJb SINE Alu 1 289 -23 1127 271 31 3 chr15 20722706 20722799 -64972955 - L1ME1 LINE L1 -21 6145 6056 2251 112 0 7 chr15 20722799 20723103 -64972651 + AluSx SINE Alu 1 302 -10 1127 271 31 3 chr15 20723103 20723330 -64972424 - L1ME1 LINE L1 -110 6056 5816 584 287 100 17 chr15 20723336 20723566 -64972188 - MIR SINE MIR -12 250 2 1254 111 0 0 chr15 20723833 20723995 -64971759 + AluSg/x SINE Alu 135 296 -16 612 261 194 11 chr15 20724126 20724499 -64971255 - L1MC4a LINE L1 -472 5649 5524 213 139 0 0 chr15 20724707 20724750 -64971004 + (T)n Simple_repeat Simple_repeat 1 43 0 1242 101 16 16 chr15 20724755 20724944 -64970810 + L1MA4A LINE L1 6051 6239 -64 2252 121 3 3 chr15 20725670 20725976 -64969778 + AluSx SINE Alu 1 306 -6 189 0 0 0 chr15 20726094 20726115 -64969639 + (T)n Simple_repeat Simple_repeat 1 21 0 1817 116 0 0 chr15 20726130 20726363 -64969391 - AluSg SINE Alu -77 233 1 2125 92 33 0 chr15 20726377 20726678 -64969076 - AluSp SINE Alu 0 310 1 1793 167 22 0 chr15 20728101 20728377 -64967377 + AluJb SINE Alu 1 282 -30 1555 158 13 77 chr15 20728629 20728939 -64966815 - AluJb SINE Alu -22 290 1 1674 160 77 7 chr15 20729043 20729330 -64966424 - AluJo SINE Alu -5 307 1 2350 102 0 3 chr15 20729964 20730267 -64965487 - AluSg SINE Alu -8 302 1 204 40 0 0 chr15 20730404 20730429 -64965325 + (T)n Simple_repeat Simple_repeat 1 25 0 2033 138 3 49 chr15 20730440 20730629 -64965125 - AluSx SINE Alu -2 310 141 2483 87 0 0 chr15 20730629 20730940 -64964814 - AluY SINE Alu 0 311 1 2033 138 3 49 chr15 20730940 20731075 -64964679 - AluSx SINE Alu -171 141 1 2088 133 3 10 chr15 20731077 20731370 -64964384 - AluSx SINE Alu -21 291 1 4325 143 64 49 chr15 20731370 20731710 -64964044 - L1MA8 LINE L1 -1 6290 5956 1463 203 7 4 chr15 20731710 20731991 -64963763 - AluJo SINE Alu -30 282 1 4325 143 64 49 chr15 20731991 20732028 -64963726 - L1MA8 LINE L1 -335 5956 5921 825 91 0 0 chr15 20732028 20732138 -64963616 - HY1 scRNA scRNA -2 110 1 4325 143 64 49 chr15 20732138 20732713 -64963041 - L1MA8 LINE L1 -370 5921 5323 2128 137 3 6 chr15 20732713 20733026 -64962728 - AluSq SINE Alu -1 312 1 1133 109 15 55 chr15 20733039 20733221 -64962533 - AluSg/x SINE Alu 0 310 135 2176 117 7 10 chr15 20733221 20733395 -64962359 - AluSx SINE Alu -5 307 133 2200 127 7 0 chr15 20733395 20733703 -64962051 - AluSx SINE Alu -2 310 1 2176 117 7 10 chr15 20733703 20733836 -64961918 - AluSx SINE Alu -179 133 1 1133 109 15 55 chr15 20733836 20733854 -64961900 - AluSg/x SINE Alu -175 135 118 2523 75 0 3 chr15 20734755 20735060 -64960694 - AluSq SINE Alu -9 304 1 230 257 199 35 chr15 20735490 20735661 -64960093 - MER112 DNA MER1_type -2 258 60 29 0 0 0 chr15 20735686 20735715 -64960039 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr15 20736422 20736442 -64959312 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 189 0 0 0 chr15 20736925 20736946 -64958808 + (T)n Simple_repeat Simple_repeat 1 21 0 191 367 42 8 chr15 20737932 20738052 -64957702 - L2 LINE L2 -586 2728 2605 371 274 137 8 chr15 20738232 20738349 -64957405 + MIR3 SINE MIR 11 142 -66 2376 95 0 3 chr15 20738390 20738694 -64957060 - AluSg SINE Alu -7 303 1 26 30 0 0 chr15 20738898 20738931 -64956823 + AT_rich Low_complexity Low_complexity 1 33 0 862 244 78 0 chr15 20740109 20740314 -64955440 + MER58A DNA MER1_type 4 224 0 21 0 0 0 chr15 20741670 20741691 -64954063 + AT_rich Low_complexity Low_complexity 1 21 0 2163 127 0 13 chr15 20742750 20743050 -64952704 + AluSx SINE Alu 1 296 -16 2080 115 4 0 chr15 20743050 20743329 -64952425 + AluSg SINE Alu 1 280 -30 873 192 48 0 chr15 20743342 20743496 -64952258 + AluJb SINE Alu 136 300 -12 300 53 0 0 chr15 20743496 20743534 -64952220 + (TA)n Simple_repeat Simple_repeat 2 39 0 873 192 48 0 chr15 20743534 20743546 -64952208 + AluJb SINE Alu 300 310 -2 1805 130 84 0 chr15 20743624 20743886 -64951868 - AluSg SINE Alu -26 284 1 222 37 0 0 chr15 20743937 20743964 -64951790 + (T)n Simple_repeat Simple_repeat 1 27 0 693 178 34 0 chr15 20744532 20744650 -64951104 + FLAM_C SINE Alu 2 123 -20 209 380 50 30 chr15 20745921 20746021 -64949733 - MIR3 SINE MIR -93 115 14 480 176 108 10 chr15 20746028 20746130 -64949624 + MER6B DNA MER2_type 4 115 -161 1356 130 8 20 chr15 20746130 20746369 -64949385 - AluJb SINE Alu -9 303 1 539 224 0 9 chr15 20746369 20746476 -64949278 + MER6B DNA MER2_type 102 207 -3 2322 109 3 13 chr15 20747053 20747365 -64948389 - AluSq SINE Alu 0 313 5 219 217 22 0 chr15 20747381 20747427 -64948327 + L2 LINE L2 3215 3261 -11 201 315 146 0 chr15 20749646 20749735 -64946019 - MIR SINE MIR -67 141 40 227 327 168 9 chr15 20749781 20749888 -64945866 - MIR SINE MIR -43 219 96 2362 104 7 0 chr15 20750491 20750789 -64944965 - AluSx SINE Alu -12 300 1 1788 104 61 32 chr15 20750943 20751223 -64944531 - AluSx SINE Alu -19 293 6 1943 115 30 20 chr15 20751229 20751524 -64944230 - AluSx SINE Alu -8 304 7 2056 140 0 23 chr15 20753304 20753612 -64942142 - AluJb SINE Alu -11 301 1 415 259 86 11 chr15 20754212 20754366 -64941388 + MIR3 SINE MIR 41 204 -4 600 313 40 0 chr15 20760303 20760479 -64935275 + MIR SINE MIR 2 184 -78 1677 190 10 52 chr15 20760483 20760889 -64934865 + L1MB7 LINE L1 5514 5902 -282 528 65 9 157 chr15 20760903 20760959 -64934795 + L1MB7 LINE L1 6086 6120 -64 2361 119 0 0 chr15 20760959 20761270 -64934484 + AluSx SINE Alu 2 312 0 528 65 9 157 chr15 20761270 20761321 -64934433 + L1MB7 LINE L1 6120 6177 -7 421 255 105 13 chr15 20762903 20763056 -64932698 + MIR SINE MIR 10 176 -86 880 159 0 0 chr15 20763088 20763220 -64932534 - FLAM_C SINE Alu -1 132 1 270 276 133 19 chr15 20764405 20764510 -64931244 + MIR SINE MIR 44 160 -102 210 71 0 0 chr15 20765114 20765142 -64930612 + (GGA)n Simple_repeat Simple_repeat 2 29 0 2503 94 3 0 chr15 20765343 20765652 -64930102 + AluSq SINE Alu 2 311 -2 2052 132 67 14 chr15 20765875 20766231 -64929523 + THE1C LTR MaLR 1 375 0 183 229 0 42 chr15 20766343 20766391 -64929363 + MIR SINE MIR 20 65 -143 290 246 200 0 chr15 20766511 20766621 -64929133 + MIR SINE MIR 119 250 -12 458 211 155 28 chr15 20767591 20767733 -64928021 + MIR SINE MIR 47 206 -56 2327 104 0 3 chr15 20768756 20769053 -64926701 - AluSg SINE Alu -13 297 2 2087 145 27 69 chr15 20769062 20769469 -64926285 + MLT1B LTR MaLR 1 390 0 869 132 7 49 chr15 20770703 20770847 -64924907 + FRAM SINE Alu 29 166 -10 242 283 121 0 chr15 20770895 20770994 -64924760 - Charlie8 DNA MER1_type -2303 114 4 273 257 55 73 chr15 20771542 20771651 -64924103 - L2 LINE L2 -27 3245 3139 2006 121 10 41 chr15 20772503 20772817 -64922937 - AluSx SINE Alu -8 304 1 2408 96 0 0 chr15 20773274 20773575 -64922179 - AluSx SINE Alu -11 301 1 187 237 0 0 chr15 20774622 20774660 -64921094 - L2 LINE L2 -9 3304 3267 2637 52 0 0 chr15 20774733 20775039 -64920715 - AluY SINE Alu -5 306 1 1853 140 32 3 chr15 20775517 20775666 -64920088 - AluJb SINE Alu -19 293 150 2119 93 61 0 chr15 20775666 20775944 -64919810 - AluSc SINE Alu -14 295 1 1853 140 32 3 chr15 20775944 20776079 -64919675 - AluJb SINE Alu -162 150 1 1485 153 0 4 chr15 20776252 20776488 -64919266 + AluJb SINE Alu 70 304 -8 2070 123 0 16 chr15 20777251 20777568 -64918186 + AluSx SINE Alu 1 312 0 2008 136 3 0 chr15 20777609 20777918 -64917836 - AluSx SINE Alu -2 310 1 547 91 23 11 chr15 20778653 20778741 -64917013 + AluJ/FRAM SINE Alu 224 312 0 783 265 56 8 chr15 20778863 20779112 -64916642 - MIR SINE MIR 0 262 2 2633 171 68 6 chr15 20779320 20779805 -64915949 + MLT1F1 LTR MaLR 3 517 -50 360 294 224 0 chr15 20780143 20780286 -64915468 + MER5A DNA MER1_type 9 183 -6 2088 90 6 50 chr15 20780878 20781201 -64914553 + AluSq SINE Alu 1 309 -4 322 273 216 0 chr15 20781866 20781954 -64913800 - MIR SINE MIR -65 143 37 261 161 45 152 chr15 20782498 20782610 -64913144 + L2 LINE L2 3173 3272 -41 250 26 51 0 chr15 20782612 20782651 -64913103 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 443 211 53 45 chr15 20782658 20782791 -64912963 - L2 LINE L2 -29 3284 3151 374 217 158 127 chr15 20782784 20782880 -64912874 - MIR SINE MIR 0 262 171 * 2348 87 3 3 chr15 20782880 20783192 -64912562 - AluSx SINE Alu 0 312 1 374 217 158 127 chr15 20783192 20783316 -64912438 - MIR SINE MIR -91 171 35 1228 135 82 14 chr15 20783322 20783529 -64912225 + MER58A DNA MER1_type 1 221 -3 469 188 42 21 chr15 20784714 20784810 -64910944 - MIR SINE MIR -75 187 90 2226 93 0 3 chr15 20784945 20785245 -64910509 - AluSq SINE Alu -13 300 2 2052 95 25 3 chr15 20785566 20785851 -64909903 - AluSx SINE Alu -21 291 1 2264 78 7 0 chr15 20786310 20786605 -64909149 + AluSq SINE Alu 1 297 -16 391 244 24 12 chr15 20788860 20788942 -64906812 + L2 LINE L2 3156 3238 -34 611 250 94 26 chr15 20790357 20790549 -64905205 + MIR SINE MIR 25 229 -33 198 273 0 0 chr15 20790596 20790640 -64905114 + L2 LINE L2 3217 3260 -12 1880 146 3 3 chr15 20790835 20791136 -64904618 - AluSx SINE Alu -11 301 1 827 302 57 74 chr15 20791346 20791820 -64903934 - L2 LINE L2 0 3272 2807 348 259 32 63 chr15 20792075 20792233 -64903521 + MIR3 SINE MIR 46 198 -10 638 310 16 0 chr15 20792811 20792998 -64902756 + L2 LINE L2 2504 2693 -621 2202 110 0 0 chr15 20793170 20793471 -64902283 - AluSx SINE Alu -11 301 1 470 240 110 0 chr15 20793588 20793742 -64902012 - L1MC4a LINE L1 -1944 5864 5694 929 249 179 27 chr15 20793775 20794263 -64901491 + L2 LINE L2 2752 3309 -4 250 88 0 0 chr15 20794540 20794574 -64901180 + tRNA-Val-GTG tRNA tRNA 2 35 -41 3065 139 12 48 chr15 20794949 20795466 -64900288 + MER41E LTR ERV1 15 512 0 25 0 0 0 chr15 20797154 20797179 -64898575 + AT_rich Low_complexity Low_complexity 1 25 0 354 316 90 7 chr15 20800083 20800238 -64895516 + MIR SINE MIR 22 189 -73 1108 151 6 0 chr15 20801484 20801656 -64894098 - MER5A DNA MER1_type 0 189 17 206 275 14 14 chr15 20802420 20802489 -64893265 + MIR SINE MIR 71 139 -123 341 260 114 104 chr15 20802515 20802991 -64892763 + L1M2 LINE L1 1668 3895 -2953 751 204 0 40 chr15 20804014 20804190 -64891564 + AluSq SINE Alu 2 170 -143 1981 126 0 16 chr15 20804670 20804980 -64890774 + AluSq SINE Alu 1 305 -8 1791 139 7 20 chr15 20805661 20805963 -64889791 - AluJo SINE Alu -14 298 1 817 304 8 40 chr15 20806759 20806838 -64888916 - LTR16A LTR ERVL 0 450 370 1994 104 34 24 chr15 20806838 20807136 -64888618 + AluSx SINE Alu 1 301 -11 817 304 8 40 chr15 20807136 20807309 -64888445 - LTR16A LTR ERVL -80 370 206 182 216 0 0 chr15 20807420 20807457 -64888297 - MIR SINE MIR 0 262 226 322 95 0 0 chr15 20807458 20807500 -64888254 + AluY SINE Alu 1 42 -260 1713 71 0 5 chr15 20807500 20807724 -64888030 + AluY SINE Alu 79 301 -10 582 279 87 0 chr15 20807732 20807915 -64887839 - MIR SINE MIR -44 218 20 1936 116 0 36 chr15 20808342 20808645 -64887109 - AluSx SINE Alu -20 292 1 1286 136 10 5 chr15 20809490 20809689 -64886065 + AluJb SINE Alu 1 200 -112 694 204 26 26 chr15 20809690 20809842 -64885912 - AluJo SINE Alu -47 265 114 1740 139 0 55 chr15 20811171 20811363 -64884391 - AluJb SINE Alu -20 292 122 2190 102 3 3 chr15 20811363 20811667 -64884087 + AluSp SINE Alu 1 304 -9 1740 139 0 55 chr15 20811667 20811783 -64883971 - AluJb SINE Alu -190 122 1 1821 179 114 14 chr15 20811872 20812292 -64883462 + MLT1C LTR MaLR 6 467 0 2175 143 8 30 chr15 20812465 20812828 -64882926 - MSTC LTR MaLR 0 428 74 1249 129 19 129 chr15 20812828 20813138 -64882616 - AluSq SINE Alu -17 296 21 851 205 12 12 chr15 20813149 20813315 -64882439 - L1ME LINE L1 -5616 454 289 785 137 23 8 chr15 20813358 20813489 -64882265 - AluJb SINE Alu -178 134 2 660 289 40 18 chr15 20813502 20813727 -64882027 - L1ME LINE L1 -5830 240 11 23 0 0 0 chr15 20813753 20813776 -64881978 + AT_rich Low_complexity Low_complexity 1 23 0 1506 157 32 21 chr15 20814189 20814470 -64881284 + AluSg1 SINE Alu 9 292 -17 21 0 0 0 chr15 20814869 20814890 -64880864 + AT_rich Low_complexity Low_complexity 1 21 0 780 71 0 0 chr15 20815116 20815214 -64880540 + AluSg/x SINE Alu 198 295 -15 800 286 91 5 chr15 20817142 20817362 -64878392 - MIR SINE MIR -19 243 5 799 105 18 94 chr15 20820243 20820355 -64875399 - L1MA5 LINE L1 -80 6220 6124 2257 88 0 7 chr15 20820355 20820661 -64875093 + AluY SINE Alu 2 305 -6 799 105 18 94 chr15 20820661 20820719 -64875035 - L1MA5 LINE L1 -176 6124 6063 674 44 11 0 chr15 20821167 20821257 -64874497 + (TG)n Simple_repeat Simple_repeat 2 92 0 232 353 128 0 chr15 20823108 20823210 -64872544 - MIR SINE MIR -60 148 34 1952 145 0 7 chr15 20824046 20824349 -64871405 - AluSx SINE Alu -11 301 1 339 215 231 0 chr15 20824752 20824873 -64870881 - MIR SINE MIR -12 250 102 202 299 0 0 chr15 20825167 20825234 -64870520 + A-rich Low_complexity Low_complexity 1 67 0 1489 151 12 81 chr15 20825266 20825598 -64870156 - AluJb SINE Alu -3 309 1 253 273 0 0 chr15 20826461 20826516 -64869238 + MIR3 SINE MIR 151 205 -3 1306 77 0 0 chr15 20826780 20826936 -64868818 - AluSp SINE Alu -24 289 134 1850 137 0 19 chr15 20826936 20827107 -64868647 - AluY SINE Alu -8 303 139 2095 97 28 0 chr15 20827107 20827396 -64868358 - AluY SINE Alu -12 299 3 1850 137 0 19 chr15 20827396 20827531 -64868223 - AluY SINE Alu -172 139 3 18782 33 2 0 chr15 20828089 20830970 -64864784 + L1PA4 LINE L1 3273 6155 0 261 0 0 0 chr15 20830983 20831012 -64864742 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 246 154 0 0 chr15 20831285 20831324 -64864430 + Alu SINE Alu 1 39 -261 537 133 0 0 chr15 20831324 20831434 -64864320 + AluJ/FRAM SINE Alu 226 312 0 393 308 31 39 chr15 20832264 20832394 -64863360 - MIR SINE MIR -89 173 45 2388 89 7 0 chr15 20832477 20832779 -64862975 - AluSp SINE Alu -9 304 1 2049 125 14 3 chr15 20832983 20833278 -64862476 + AluSq SINE Alu 1 298 -15 22 77 0 0 chr15 20833663 20833689 -64862065 + AT_rich Low_complexity Low_complexity 1 26 0 298 266 25 13 chr15 20833822 20833901 -64861853 - AluSc SINE Alu -217 82 3 363 350 10 12 chr15 20833903 20834100 -64861654 - MIR SINE MIR -53 209 16 2163 50 15 12 chr15 20834128 20834387 -64861367 - L1PA8 LINE L1 -4 6168 5909 387 211 145 40 chr15 20834473 20834625 -64861129 - L1MC5 LINE L1 -48 7913 7746 1633 158 28 11 chr15 20835459 20835744 -64860010 - AluJo SINE Alu -11 301 12 355 336 29 0 chr15 20835815 20835919 -64859835 - L2 LINE L2 -2 3270 3164 1604 118 95 23 chr15 20836858 20837120 -64858634 - AluSx SINE Alu -28 284 4 1456 152 141 0 chr15 20837339 20837433 -64858321 + AluSc SINE Alu 2 81 -228 279 0 0 0 chr15 20837433 20837464 -64858290 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1456 152 141 0 chr15 20837464 20837638 -64858116 + AluSc SINE Alu 81 308 -1 1251 102 68 0 chr15 20837787 20837963 -64857791 + AluSg SINE Alu 2 189 -121 765 323 71 45 chr15 20838110 20838188 -64857566 - L3 LINE CR1 -353 1224 1149 2641 49 0 0 chr15 20838188 20838496 -64857258 - AluY SINE Alu -3 308 1 765 323 71 45 chr15 20838496 20838543 -64857211 - L3 LINE CR1 -428 1149 1105 2221 110 0 7 chr15 20838543 20838842 -64856912 - AluSx SINE Alu -15 297 1 765 323 71 45 chr15 20838842 20839177 -64856577 - L3 LINE CR1 -472 1105 751 190 367 23 31 chr15 20839354 20839482 -64856272 - L2 LINE L2 -212 3060 2934 1179 130 0 0 chr15 20839869 20840030 -64855724 - AluSp SINE Alu -13 300 140 2182 122 3 10 chr15 20840033 20840336 -64855418 - AluSx SINE Alu -11 301 1 1775 187 0 20 chr15 20891643 20891937 -64803817 + AluJo SINE Alu 1 288 -24 1845 74 0 9 chr15 20892261 20892492 -64803262 - AluY SINE Alu -10 301 73 658 220 84 58 chr15 20892713 20892861 -64802893 + MIR SINE MIR 3 159 -103 2337 105 0 6 chr15 20892861 20893174 -64802580 + AluSq SINE Alu 1 311 -2 658 220 84 58 chr15 20893174 20893216 -64802538 + MIR SINE MIR 159 198 -64 17419 75 4 3 chr15 20893569 20896093 -64799661 - L1P LINE L1 -985 5161 2636 743 158 62 7 chr15 20896093 20896239 -64799515 - L1P LINE L1 -3421 2725 2572 243 133 0 22 chr15 20896352 20896397 -64799357 - L1MC3 LINE L1 -544 7241 7198 359 253 0 0 chr15 20896415 20896498 -64799256 - MLT1F1 LTR MaLR -448 119 37 1881 158 26 44 chr15 20896500 20896930 -64798824 - L1MC3 LINE L1 -688 7097 6676 298 264 35 35 chr15 20897173 20897260 -64798494 - MIR3 SINE MIR -3 205 119 * 546 283 57 60 chr15 20897232 20897515 -64798239 - L2 LINE L2 -1 3312 3031 1006 307 102 54 chr15 20897619 20898326 -64797428 - L2 LINE L2 -440 2874 2134 197 304 137 0 chr15 20898334 20898436 -64797318 + MIR SINE MIR 129 244 -18 2437 90 0 0 chr15 20899200 20899500 -64796254 + AluSg SINE Alu 1 300 -10 355 225 68 136 chr15 20899521 20899712 -64796042 + MER91A DNA MER1_type 19 196 0 252 289 133 61 chr15 20901004 20901184 -64794570 - L2 LINE L2 -156 3116 2924 364 234 103 7 chr15 20901647 20901792 -64793962 + L1ME4a LINE L1 5738 5896 -225 2254 97 3 7 chr15 20901968 20902268 -64793486 - AluSx SINE Alu -12 300 2 279 372 88 14 chr15 20902596 20902959 -64792795 + L2 LINE L2 2286 2675 -639 226 272 37 25 chr15 20902966 20903047 -64792707 + L2 LINE L2 2783 2864 -450 574 148 117 16 chr15 20903088 20903216 -64792538 - L1MB4 LINE L1 -8 6172 6032 467 315 13 88 chr15 20903225 20903533 -64792221 + L2 LINE L2 2945 3229 -43 512 235 0 0 chr15 20905436 20905534 -64790220 - FLAM_A SINE Alu -23 119 22 483 278 94 48 chr15 20905704 20905897 -64789857 - Tigger8 DNA MER2_type -5 661 478 2233 110 0 0 chr15 20905897 20906189 -64789565 + AluSx SINE Alu 1 292 -20 483 278 94 48 chr15 20906189 20906369 -64789385 - Tigger8 DNA MER2_type -188 478 271 353 151 0 0 chr15 20906447 20906500 -64789254 + Alu SINE Alu 2 54 -247 1435 110 14 182 chr15 20906603 20906920 -64788834 - L1MC1 LINE L1 -394 5939 5711 977 191 18 0 chr15 20906920 20907088 -64788666 - FAM SINE Alu -4 171 1 1435 110 14 182 chr15 20907088 20907199 -64788555 - L1MC1 LINE L1 -622 5711 5583 355 262 213 7 chr15 20907471 20907612 -64788142 + MIR SINE MIR 56 225 -37 214 235 20 0 chr15 20907865 20907916 -64787838 + (TA)n Simple_repeat Simple_repeat 2 53 0 2296 80 23 0 chr15 20908572 20908874 -64786880 - AluY SINE Alu -2 309 1 2353 64 3 10 chr15 20909201 20909499 -64786255 - AluY SINE Alu -15 296 1 1067 79 0 0 chr15 20909499 20909626 -64786128 - AluSg SINE Alu -183 127 1 380 278 19 127 chr15 20910047 20910124 -64785630 + MIR SINE MIR 18 102 -160 1903 110 11 73 chr15 20910124 20910479 -64785275 - L1MA2 LINE L1 0 6304 5972 380 278 19 127 chr15 20910479 20910613 -64785141 + MIR SINE MIR 102 206 -56 733 289 11 66 chr15 20911512 20911862 -64783892 - MER102b DNA MER1_type -1 340 10 265 123 31 0 chr15 20912896 20912961 -64782793 + (TA)n Simple_repeat Simple_repeat 2 68 0 180 0 0 0 chr15 20912981 20913001 -64782753 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 741 167 27 47 chr15 20913004 20913154 -64782600 - FRAM SINE Alu -30 146 1 2211 88 0 72 chr15 20913533 20913853 -64781901 + AluSx SINE Alu 1 297 -15 288 111 0 0 chr15 20914709 20914754 -64781000 + (T)n Simple_repeat Simple_repeat 1 45 0 279 114 0 0 chr15 20915403 20915447 -64780307 + (T)n Simple_repeat Simple_repeat 1 44 0 1006 174 0 0 chr15 20916206 20916367 -64779387 - AluJb SINE Alu -10 302 142 28 29 0 0 chr15 20916367 20916402 -64779352 + AT_rich Low_complexity Low_complexity 1 35 0 1944 135 24 14 chr15 20916403 20916692 -64779062 - AluJb SINE Alu -20 292 1 585 258 16 8 chr15 20917229 20917353 -64778401 + L2 LINE L2 3187 3311 -2 990 351 107 33 chr15 20917403 20917966 -64777788 - L2 LINE L2 -359 2955 2435 2265 61 37 20 chr15 20917966 20918260 -64777494 - AluY SINE Alu -12 299 1 990 351 107 33 chr15 20918260 20918822 -64776932 - L2 LINE L2 -879 2435 1747 221 0 35 0 chr15 20919083 20919112 -64776642 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 2101 132 23 0 chr15 20919146 20919450 -64776304 + AluSx SINE Alu 1 311 -1 318 307 80 22 chr15 20919539 20919714 -64776040 + L1MC/D LINE L1 4369 4532 -1614 1549 143 38 56 chr15 20919714 20920030 -64775724 + AluJb SINE Alu 1 311 0 2027 73 45 73 chr15 20920036 20920350 -64775404 + AluY SINE Alu 1 305 -6 318 307 80 22 chr15 20920350 20920391 -64775363 + L1MC/D LINE L1 4536 4606 -1540 2248 109 3 0 chr15 20920495 20920788 -64774966 + AluSq SINE Alu 1 294 -19 25 0 0 0 chr15 20921002 20921027 -64774727 + AT_rich Low_complexity Low_complexity 1 25 0 303 313 87 7 chr15 20921157 20921307 -64774447 + L1MC/D LINE L1 5320 5481 -761 737 128 0 8 chr15 20921422 20921539 -64774215 - AluSp/q SINE Alu -11 302 187 302 148 0 0 chr15 20921693 20921747 -64774007 - AluJb SINE Alu -7 295 242 1124 129 59 0 chr15 20921750 20921920 -64773834 - AluJb SINE Alu -129 183 4 2004 140 7 0 chr15 20922905 20923208 -64772546 - AluSx SINE Alu 0 305 1 276 179 0 0 chr15 20923450 20923468 -64772286 + A-rich Low_complexity Low_complexity 1 18 -38 2222 124 0 3 chr15 20923468 20923782 -64771972 + AluSq SINE Alu 1 313 0 276 179 0 0 chr15 20923782 20923819 -64771935 + A-rich Low_complexity Low_complexity 17 56 0 29 28 0 0 chr15 20923997 20924033 -64771721 + AT_rich Low_complexity Low_complexity 1 36 0 495 118 0 0 chr15 20924151 20924227 -64771527 - AluJ/FRAM SINE Alu -12 300 225 268 222 42 0 chr15 20924351 20924423 -64771331 - MIR SINE MIR -111 151 77 * 320 269 90 0 chr15 20924418 20924496 -64771258 - L2 LINE L2 -41 3231 3147 2171 168 108 33 chr15 20924527 20925021 -64770733 + MER63C DNA MER1_type 253 797 -263 1702 157 44 4 chr15 20925021 20925295 -64770459 + AluJb SINE Alu 1 285 -27 2171 168 108 33 chr15 20925295 20925373 -64770381 + MER63C DNA MER1_type 797 868 -62 3898 165 87 13 chr15 20925389 20926288 -64769466 + L1MB4 LINE L1 5215 6180 0 2042 127 3 49 chr15 20926298 20926622 -64769132 + AluSx SINE Alu 1 309 -3 245 319 0 0 chr15 20926676 20926748 -64769006 + MER63C DNA MER1_type 859 930 0 514 271 121 27 chr15 20928307 20928680 -64767074 - L1ME LINE L1 -474 5688 5281 203 252 234 0 chr15 20928784 20928891 -64766863 + MIR SINE MIR 125 256 -6 537 279 124 30 chr15 20928940 20929173 -64766581 + MIR SINE MIR 6 260 -2 2196 130 0 0 chr15 20929717 20930018 -64765736 + AluSx SINE Alu 1 301 -11 1668 153 30 34 chr15 20930025 20930320 -64765434 + AluJo SINE Alu 12 305 -7 254 357 123 7 chr15 20930607 20930761 -64764993 - L2 LINE L2 -1 3271 3100 214 204 23 0 chr15 20930937 20930981 -64764773 + L2 LINE L2 3268 3312 -1 24 0 0 0 chr15 20931158 20931182 -64764572 + AT_rich Low_complexity Low_complexity 1 24 0 4273 145 57 23 chr15 20931777 20931803 -64763951 + L1MB7 LINE L1 5093 5117 -1067 2117 132 3 0 chr15 20931803 20932092 -64763662 + AluSx SINE Alu 1 290 -22 4273 145 57 23 chr15 20932092 20933122 -64762632 + L1MB7 LINE L1 5117 6184 0 240 111 0 0 chr15 20933326 20933362 -64762392 + (TCCCC)n Simple_repeat Simple_repeat 4 39 0 2105 118 7 7 chr15 20933362 20933650 -64762104 - AluSx SINE Alu -24 288 1 275 288 0 0 chr15 20934531 20934597 -64761157 - L2 LINE L2 0 3272 3207 4088 62 24 0 chr15 20935755 20936289 -64759465 - L1PA7 LINE L1 -1 6153 5607 247 188 0 0 chr15 20936389 20936437 -64759317 - Alu SINE Alu -124 178 131 2432 79 3 0 chr15 20936616 20936920 -64758834 + AluSp SINE Alu 1 305 -8 2156 48 3 35 chr15 20936923 20937234 -64758520 + AluY SINE Alu 1 301 -10 394 275 36 43 chr15 20937350 20937488 -64758266 + L2 LINE L2 3136 3272 0 710 232 23 161 chr15 20938709 20939180 -64756574 + LTR67 LTR ERVL 102 636 79 2107 99 0 11 chr15 20939180 20939463 -64756291 + AluSx SINE Alu 1 280 -32 225 0 0 0 chr15 20939463 20939488 -64756266 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 710 232 23 161 chr15 20939488 20939536 -64756218 + LTR67 LTR ERVL 497 550 -7 1957 151 17 0 chr15 20939597 20939896 -64755858 + AluJb SINE Alu 1 304 -8 321 248 9 19 chr15 20939980 20940085 -64755669 - L1ME LINE L1 -392 5729 5626 2190 133 3 0 chr15 20940547 20940855 -64754899 + AluSx SINE Alu 2 310 -2 1214 174 0 24 chr15 20941215 20941427 -64754327 + AluJb SINE Alu 87 293 -19 2206 107 0 7 chr15 20941638 20941936 -64753818 - AluSx SINE Alu -16 296 1 25 0 0 0 chr15 20944059 20944084 -64751670 + AT_rich Low_complexity Low_complexity 1 25 0 713 186 32 0 chr15 20944136 20944260 -64751494 - FLAM_A SINE Alu -5 128 1 2052 139 7 0 chr15 20944288 20944583 -64751171 + AluSx SINE Alu 1 297 -15 2049 129 3 3 chr15 20945823 20946109 -64749645 - AluSx SINE Alu -26 286 1 1673 149 0 84 chr15 20946140 20946463 -64749291 - AluJo SINE Alu -16 296 1 31 44 0 0 chr15 20946772 20946817 -64748937 + AT_rich Low_complexity Low_complexity 1 45 0 1911 139 24 10 chr15 20947571 20947859 -64747895 - AluSx SINE Alu -20 292 1 363 358 9 0 chr15 20948019 20948128 -64747626 - MIR SINE MIR -147 115 6 283 226 0 0 chr15 20948835 20948888 -64746866 + MIR SINE MIR 89 141 -67 1766 49 5 0 chr15 20948898 20949121 -64746633 + L1PA8 LINE L1 5940 6163 -9 210 226 0 38 chr15 20949352 20949405 -64746349 + MIR3 SINE MIR 157 207 -1 536 241 0 0 chr15 20949407 20949540 -64746214 + L1MC/D LINE L1 5391 5523 -719 1917 143 0 11 chr15 20949982 20950268 -64745486 - AluSx SINE Alu -29 283 1 464 280 44 93 chr15 20951410 20951626 -64744128 - MLT1I LTR MaLR -26 383 189 2179 112 20 0 chr15 20951626 20951930 -64743824 - AluY SINE Alu -1 310 1 464 280 44 93 chr15 20951930 20952056 -64743698 - MLT1I LTR MaLR -220 189 58 364 247 47 0 chr15 20952981 20953066 -64742688 + L2 LINE L2 3225 3313 0 448 194 111 56 chr15 20953688 20953832 -64741922 - MER5A DNA MER1_type -3 186 35 21 36 0 0 chr15 20954179 20954207 -64741547 + AT_rich Low_complexity Low_complexity 1 28 0 2135 137 25 25 chr15 20955319 20955684 -64740070 - MLT1A1 LTR MaLR 0 365 1 6266 68 13 43 chr15 20955940 20957390 -64738364 + L1PA14 LINE L1 4743 6161 0 635 343 45 0 chr15 20957677 20957922 -64737832 + MIR SINE MIR 2 257 -5 663 274 73 5 chr15 20960423 20960627 -64735127 + MIR SINE MIR 1 218 -44 315 233 176 19 chr15 20960667 20960826 -64734928 - L1M4 LINE L1 -1891 4255 4072 361 341 15 7 chr15 20960831 20960966 -64734788 + L2 LINE L2 1839 1974 -1340 6656 56 24 0 chr15 20960978 20961449 -64734305 - L1PA7 LINE L1 0 6154 5696 2166 113 0 26 chr15 20961449 20961759 -64733995 - AluSc SINE Alu -6 303 2 6656 56 24 0 chr15 20961759 20962504 -64733250 - L1PA7 LINE L1 -458 5696 4926 180 0 0 0 chr15 20962507 20962527 -64733227 + (T)n Simple_repeat Simple_repeat 1 20 0 11400 163 16 76 chr15 20962546 20965336 -64730418 + L1P LINE L1 10 2632 -3514 25 18 0 73 chr15 20965337 20965392 -64730362 + AT_rich Low_complexity Low_complexity 1 51 0 511 279 0 17 chr15 20965431 20965671 -64730083 + L1P LINE L1 2647 2882 -3264 843 207 0 0 chr15 20965837 20965982 -64729772 + FRAM SINE Alu 1 140 -36 198 0 0 0 chr15 20965990 20966012 -64729742 + (TAA)n Simple_repeat Simple_repeat 1 22 0 298 370 46 17 chr15 20966024 20966197 -64729557 - L3 LINE CR1 -1169 408 231 1886 141 3 34 chr15 20967780 20968078 -64727676 - AluSx SINE Alu -23 289 1 24 0 0 0 chr15 20968250 20968274 -64727480 + AT_rich Low_complexity Low_complexity 1 24 0 1837 164 10 7 chr15 20968277 20968575 -64727179 + AluJb SINE Alu 1 299 -13 2166 119 10 0 chr15 20968886 20969189 -64726565 + AluSq SINE Alu 3 308 -5 22 0 0 0 chr15 20970207 20970229 -64725525 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr15 20971595 20971623 -64724131 + AT_rich Low_complexity Low_complexity 1 28 0 3843 149 17 59 chr15 20971833 20972505 -64723249 + L1MB3 LINE L1 5340 6039 -144 3680 114 8 4 chr15 20972505 20973030 -64722724 - MER1A DNA MER1_type 0 527 1 3843 149 17 59 chr15 20973030 20973126 -64722628 + L1MB3 LINE L1 6039 6137 -46 1791 188 0 0 chr15 20973126 20973414 -64722340 - AluJo SINE Alu -22 290 3 276 53 0 0 chr15 20973419 20973457 -64722297 + (TATG)n Simple_repeat Simple_repeat 2 39 0 2151 113 0 17 chr15 20973457 20973748 -64722006 - AluSg SINE Alu -24 286 1 3843 149 17 59 chr15 20973748 20973803 -64721951 + L1MB3 LINE L1 6080 6136 -47 720 73 0 0 chr15 20973803 20973931 -64721823 + AluSc SINE Alu 183 310 0 643 62 0 0 chr15 20973983 20974064 -64721690 + AluY SINE Alu 1 81 -230 4416 152 35 17 chr15 20974167 20974205 -64721549 - L1MB3 LINE L1 -15 6404 6368 1987 125 17 0 chr15 20974205 20974493 -64721261 - AluSq SINE Alu -20 293 1 4416 152 35 17 chr15 20974493 20975288 -64720466 - L1MB3 LINE L1 -51 6368 5556 652 271 66 31 chr15 20975300 20975684 -64720070 + L1ME3 LINE L1 5219 5617 -545 564 229 64 55 chr15 20975686 20975957 -64719797 + L1ME3 LINE L1 5680 5904 -258 2073 122 10 0 chr15 20975957 20976252 -64719502 - AluSx SINE Alu -14 298 1 999 205 92 7 chr15 20976255 20976558 -64719196 - L1MB3 LINE L1 -814 5568 5240 2656 199 34 69 chr15 20976569 20976753 -64719001 - L1MB3 LINE L1 -1656 4726 4537 2488 93 0 0 chr15 20976753 20977064 -64718690 - AluY SINE Alu 0 311 1 2137 144 0 0 chr15 20977065 20977370 -64718384 - AluSx SINE Alu -7 305 1 1533 181 23 55 chr15 20977372 20977682 -64718072 - AluJo SINE Alu -12 300 1 2656 199 34 69 chr15 20977682 20978385 -64717369 - L1MB3 LINE L1 -1846 4536 3866 3748 144 38 8 chr15 20978394 20979305 -64716449 - L1MB3 LINE L1 -3625 2757 1811 1078 159 43 0 chr15 20979305 20979513 -64716241 - Tigger1 DNA MER2_type 0 2418 2202 844 131 31 56 chr15 20979502 20979609 -64716145 - Tigger1 DNA MER2_type -2261 157 54 * 2517 44 0 0 chr15 20979609 20979903 -64715851 + AluY SINE Alu 1 294 -17 844 131 31 56 chr15 20979903 20979955 -64715799 - Tigger1 DNA MER2_type -2364 54 2 2782 156 32 55 chr15 20979987 20980546 -64715208 - L1MB3 LINE L1 -5823 561 16 6639 71 14 0 chr15 20980603 20982171 -64713583 + L1PA10 LINE L1 4551 6152 -16 23 0 0 0 chr15 20983116 20983139 -64712615 + AT_rich Low_complexity Low_complexity 1 23 0 2211 103 3 0 chr15 20984226 20984536 -64711218 - AluY SINE Alu 0 311 1 2227 102 0 13 chr15 20985058 20985372 -64710382 - AluSg SINE Alu 0 310 1 873 333 152 40 chr15 20985735 20986560 -64709194 + L3 LINE CR1 280 1196 -381 300 289 89 28 chr15 20986593 20987275 -64708479 - L1M4 LINE L1 -1118 5028 4233 2025 143 7 13 chr15 20987275 20987583 -64708171 - AluJb SINE Alu -6 306 1 300 289 89 28 chr15 20987583 20987756 -64707998 - L1M4 LINE L1 -1913 4233 4072 481 291 129 20 chr15 20987773 20988075 -64707679 - L1MDa LINE L1 -3161 3379 3045 235 296 11 0 chr15 20988086 20988174 -64707580 + L1MC4 LINE L1 6615 6703 -1339 378 273 54 66 chr15 20988203 20988438 -64707316 - L1MDa LINE L1 -3529 3011 2782 842 136 8 0 chr15 20988438 20988570 -64707184 - FLAM_C SINE Alu 0 133 1 378 273 54 66 chr15 20988570 20988744 -64707010 - L1MDa LINE L1 -3758 2782 2607 288 0 0 0 chr15 20988849 20988881 -64706873 + (TG)n Simple_repeat Simple_repeat 2 33 0 22 56 0 0 chr15 20988948 20988984 -64706770 + AT_rich Low_complexity Low_complexity 1 36 0 1630 134 17 81 chr15 20989029 20989387 -64706367 - L1MB8 LINE L1 -1 6177 5843 452 263 150 17 chr15 20989592 20989885 -64705869 - L1MDa LINE L1 -4602 1938 1607 1686 114 8 4 chr15 20990857 20991093 -64704661 - AluSg SINE Alu -73 237 1 393 293 57 0 chr15 20991546 20991669 -64704085 + L2 LINE L2 2596 2725 -589 * 610 295 112 8 chr15 20991659 20991891 -64703863 + L2 LINE L2 2826 3091 -222 2261 103 0 3 chr15 20991891 20992192 -64703562 + AluSx SINE Alu 1 300 -12 610 295 112 8 chr15 20992192 20992227 -64703527 + L2 LINE L2 3091 3121 -192 964 137 72 13 chr15 20992366 20992519 -64703235 + FRAM SINE Alu 1 161 -15 21 0 0 0 chr15 20992702 20992723 -64703031 + AT_rich Low_complexity Low_complexity 1 21 0 1221 109 0 22 chr15 20993036 20993219 -64702535 - AluY SINE Alu -6 305 127 1977 71 104 0 chr15 20994364 20994632 -64701122 - AluSx SINE Alu -16 296 1 284 272 110 136 chr15 20994910 20995101 -64700653 + MIR3 SINE MIR 16 201 -7 1598 136 17 33 chr15 20995448 20995749 -64700005 + L1MB8 LINE L1 5874 6169 -9 2266 66 0 0 chr15 20995767 20996040 -64699714 + AluY SINE Alu 37 309 -2 2177 112 0 13 chr15 20996738 20997041 -64698713 - AluY SINE Alu -12 299 1 196 370 34 76 chr15 20998093 20998212 -64697542 + L2 LINE L2 3126 3239 -33 2273 110 3 0 chr15 20999635 20999934 -64695820 + AluSx SINE Alu 1 300 -12 672 139 148 0 chr15 20999934 21000049 -64695705 - MER2 DNA MER2_type -213 132 1 951 210 73 15 chr15 21000055 21000353 -64695401 - L1M4 LINE L1 -1162 4984 4623 482 284 44 16 chr15 21000405 21000588 -64695166 - L1M4 LINE L1 -2606 3540 3353 1924 112 11 0 chr15 21001551 21001840 -64693914 + AluSp SINE Alu 16 307 0 931 244 138 0 chr15 21002243 21002468 -64693286 + MIR SINE MIR 6 261 -1 251 296 93 37 chr15 21003450 21003558 -64692196 - L2 LINE L2 -8 3264 3151 237 321 82 57 chr15 21004062 21004464 -64691290 - L2 LINE L2 -1546 1768 1357 4920 152 21 33 chr15 21004558 21004642 -64691112 + L1MB7 LINE L1 5100 5184 -1000 1707 197 34 8 chr15 21004642 21004998 -64690756 - MLT1A1 LTR MaLR 0 365 1 4920 152 21 33 chr15 21004998 21005986 -64689768 + L1MB7 LINE L1 5184 6154 -30 5564 127 48 10 chr15 21006193 21007122 -64688632 + L1MD1 LINE L1 5278 6242 0 764 211 0 0 chr15 21007420 21007553 -64688201 + FLAM_C SINE Alu 1 133 0 246 283 127 14 chr15 21007729 21007897 -64687857 + MIR SINE MIR 37 262 0 830 304 45 14 chr15 21007926 21008212 -64687542 - L3 LINE CR1 -42 1535 1241 259 281 97 18 chr15 21008235 21008349 -64687405 + MIR3 SINE MIR 56 178 -30 345 354 23 0 chr15 21008387 21008517 -64687237 - L3 LINE CR1 -376 1201 1069 764 141 16 8 chr15 21008525 21008690 -64687064 + AluJb SINE Alu 153 318 0 286 363 65 12 chr15 21008765 21008933 -64686821 - L3 LINE CR1 -609 968 792 355 303 41 7 chr15 21009038 21009183 -64686571 - L3 LINE CR1 -704 873 724 21 36 0 0 chr15 21009205 21009233 -64686521 + AT_rich Low_complexity Low_complexity 1 28 0 2216 99 0 0 chr15 21009297 21009580 -64686174 - AluSx SINE Alu -29 283 1 1454 200 20 30 chr15 21010262 21010567 -64685187 + AluJo SINE Alu 1 302 -10 192 253 0 81 chr15 21011506 21011593 -64684161 + MIR3 SINE MIR 84 163 -45 857 78 0 54 chr15 21011912 21012041 -64683713 - AluSg/x SINE Alu -6 306 185 1825 11 0 0 chr15 21013259 21013521 -64682233 - L1PA3 LINE L1 -681 5474 5213 5912 23 0 0 chr15 21013521 21014201 -64681553 + L1PA3 LINE L1 5472 6155 0 4433 148 61 78 chr15 21015840 21016828 -64678926 + L1MB3 LINE L1 4635 5586 -597 487 214 46 30 chr15 21016828 21016959 -64678795 + FLAM_A SINE Alu 1 133 0 4433 148 61 78 chr15 21016959 21017548 -64678206 + L1MB3 LINE L1 5586 6183 0 219 364 20 0 chr15 21017924 21018023 -64677731 - L2 LINE L2 -1005 2309 2209 25 51 0 0 chr15 21019038 21019077 -64676677 + AT_rich Low_complexity Low_complexity 1 39 0 30 45 0 0 chr15 21019469 21019513 -64676241 + AT_rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr15 21021429 21021466 -64674288 + AT_rich Low_complexity Low_complexity 1 37 0 376 242 30 10 chr15 21021490 21021589 -64674165 + MIR SINE MIR 51 151 -57 921 268 48 78 chr15 21021726 21022099 -64673655 - L3 LINE CR1 -15 1562 1201 249 62 67 134 chr15 21022112 21022190 -64673564 + L1MB8 LINE L1 6106 6184 0 618 260 12 53 chr15 21022735 21022981 -64672773 + L1MEd LINE L1 3 238 -5881 215 404 20 0 chr15 21023096 21023195 -64672559 - L2 LINE L2 -604 2710 2610 * 454 256 123 8 chr15 21023188 21023361 -64672393 - MIR SINE MIR 0 262 74 185 215 108 32 chr15 21023421 21023514 -64672240 - L2 LINE L2 -764 2550 2451 3099 157 36 19 chr15 21023565 21024150 -64671604 + L1MB5 LINE L1 5580 6174 0 1740 160 4 7 chr15 21024463 21024732 -64671022 - AluSx SINE Alu -41 271 4 709 249 95 83 chr15 21024896 21025149 -64670605 + MIR SINE MIR 1 256 -6 459 0 0 0 chr15 21025152 21025203 -64670551 + (CAT)n Simple_repeat Simple_repeat 2 52 0 313 281 109 16 chr15 21025414 21025542 -64670212 - L2 LINE L2 0 3313 3174 1424 133 40 36 chr15 21025550 21025828 -64669926 - L1MB8 LINE L1 -1 6177 5899 869 281 16 16 chr15 21026078 21026327 -64669427 - MIR SINE MIR -8 254 6 1717 186 3 0 chr15 21026836 21027126 -64668628 + AluJb SINE Alu 1 291 -21 233 369 28 13 chr15 21027576 21027706 -64668048 + MIR SINE MIR 38 168 -40 1980 133 17 10 chr15 21027858 21028152 -64667602 - AluSq SINE Alu -15 298 3 225 94 0 0 chr15 21028765 21028797 -64666957 + (CA)n Simple_repeat Simple_repeat 1 32 0 367 235 25 84 chr15 21029827 21029946 -64665808 - L2 LINE L2 -13 3300 3189 2489 86 0 0 chr15 21030342 21030644 -64665110 - AluSc SINE Alu -7 302 1 2484 61 0 0 chr15 21030989 21031286 -64664468 - AluY SINE Alu -14 297 1 284 260 130 41 chr15 21032463 21032609 -64663145 + MER5A DNA MER1_type 2 160 -29 1903 170 0 7 chr15 21032613 21032919 -64662835 - AluJo SINE Alu -8 304 1 2261 110 3 0 chr15 21033339 21033639 -64662115 + AluSp SINE Alu 1 301 -12 184 118 20 20 chr15 21034864 21034915 -64660839 + A-rich Low_complexity Low_complexity 5 55 0 2446 85 0 0 chr15 21035000 21035295 -64660459 + AluSc SINE Alu 1 295 -14 717 193 143 37 chr15 21035985 21036146 -64659608 - MER5A DNA MER1_type 0 189 12 2155 119 0 16 chr15 21036795 21037113 -64658641 - AluSq SINE Alu 0 313 1 2377 87 0 3 chr15 21037625 21037934 -64657820 + AluSc SINE Alu 1 308 -1 384 265 63 29 chr15 21038546 21038691 -64657063 + MER5A DNA MER1_type 7 144 -34 1204 157 0 60 chr15 21040270 21040519 -64655235 - L1MB8 LINE L1 -6 6172 5939 1591 143 59 0 chr15 21040520 21040806 -64654948 + Tigger3(Golem) DNA MER2_type 1 303 -2726 4082 116 81 26 chr15 21040807 21041576 -64654178 + Tigger3(Golem) DNA MER2_type 2218 3028 -1 997 175 74 0 chr15 21041576 21041793 -64653961 - L1MB8 LINE L1 -255 5923 5691 2026 148 27 0 chr15 21041835 21042133 -64653621 - AluJb SINE Alu -6 306 1 243 106 170 0 chr15 21042231 21042278 -64653476 + MLT1A1 LTR MaLR 259 313 -52 968 144 31 2 chr15 21042625 21042872 -64652882 + MER2 DNA MER2_type 23 316 -29 23 0 0 0 chr15 21042959 21042982 -64652772 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr15 21043033 21043053 -64652701 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 297 331 97 23 chr15 21043057 21043339 -64652415 + L2 LINE L2 2749 3047 -225 213 291 148 82 chr15 21043396 21043578 -64652176 + L2 LINE L2 3064 3257 -15 723 163 7 7 chr15 21043601 21043754 -64652000 - Charlie1 DNA MER1_type -1 2760 2608 313 186 70 12 chr15 21043771 21043857 -64651897 - Charlie1 DNA MER1_type -2655 106 16 469 303 27 5 chr15 21044776 21044964 -64650790 + MER58C DNA MER1_type 1 192 -23 469 200 85 62 chr15 21044982 21045112 -64650642 + FLAM_A SINE Alu 1 133 0 2346 89 3 16 chr15 21045120 21045436 -64650318 + AluSp SINE Alu 1 312 -1 1570 170 15 11 chr15 21045439 21045710 -64650044 + AluJo SINE Alu 3 274 -38 495 0 0 0 chr15 21045723 21045778 -64649976 + (TAAAA)n Simple_repeat Simple_repeat 2 56 0 257 231 0 31 chr15 21045799 21045864 -64649890 + MIR SINE MIR 200 262 0 279 70 0 0 chr15 21046031 21046074 -64649680 - L1MB4 LINE L1 -2 6178 6136 * 394 218 73 0 chr15 21046072 21046182 -64649572 - L1MCa LINE L1 -4760 1666 1549 374 299 19 0 chr15 21096239 21096346 -64599408 - MIR3 SINE MIR -2 206 98 2420 76 0 0 chr15 21096361 21096651 -64599103 + AluSc SINE Alu 1 290 -19 2111 118 7 3 chr15 21097321 21097617 -64598137 - AluSx SINE Alu -15 297 1 286 103 0 0 chr15 21097674 21097713 -64598041 - U6 snRNA snRNA -66 41 3 433 257 64 0 chr15 21097716 21097825 -64597929 - L2 LINE L2 -8 3305 3190 1714 106 17 0 chr15 21098314 21098550 -64597204 - AluSg/x SINE Alu -2 308 69 1771 143 0 7 chr15 21098650 21098923 -64596831 + AluJo SINE Alu 21 291 -21 2238 102 0 7 chr15 21099061 21099354 -64596400 + AluSc SINE Alu 1 291 -18 260 207 107 107 chr15 21099549 21099670 -64596084 + L2 LINE L2 3193 3313 0 1477 140 133 33 chr15 21099781 21100052 -64595702 + AluJo SINE Alu 1 298 -14 188 135 27 0 chr15 21100323 21100360 -64595394 + CT-rich Low_complexity Low_complexity 1 38 0 329 206 16 0 chr15 21100453 21100516 -64595238 - HAL1 LINE L1 -1 2506 2443 911 204 0 12 chr15 21100516 21100721 -64595033 + AluJb SINE Alu 117 319 0 1643 211 114 69 chr15 21100729 21100845 -64594909 - HAL1 LINE L1 -76 2431 2322 1954 161 0 19 chr15 21100845 21101162 -64594592 - AluJo SINE Alu 0 312 2 1643 211 114 69 chr15 21101162 21101700 -64594054 - HAL1 LINE L1 -185 2322 1747 487 305 61 6 chr15 21101735 21101899 -64593855 - MLT1I LTR MaLR -39 370 198 1761 164 0 7 chr15 21102021 21102308 -64593446 - AluJb SINE Alu -8 304 20 2553 44 7 0 chr15 21102343 21102639 -64593115 - AluY SINE Alu -13 298 1 866 219 87 35 chr15 21102644 21102931 -64592823 - HAL1 LINE L1 -762 1745 1444 2399 86 3 0 chr15 21103875 21104176 -64591578 + AluSg SINE Alu 1 302 -8 2251 128 0 0 chr15 21104252 21104564 -64591190 + AluSx SINE Alu 1 312 0 264 75 50 0 chr15 21104892 21104932 -64590822 + L2 LINE L2 3271 3312 -1 2640 7 0 0 chr15 21104962 21105244 -64590510 + AluYb8 SINE Alu 35 316 -2 1366 181 36 4 chr15 21106107 21106356 -64589398 + AluJb SINE Alu 47 303 -9 1769 132 10 84 chr15 21106370 21106506 -64589248 + AluJb SINE Alu 3 148 -164 2074 129 3 3 chr15 21106506 21106809 -64588945 + AluSc SINE Alu 1 303 -6 1745 117 23 23 chr15 21106811 21107075 -64588679 + AluSx SINE Alu 36 299 -13 1769 132 10 84 chr15 21107075 21107245 -64588509 + AluJb SINE Alu 149 289 -23 209 326 174 57 chr15 21107343 21107659 -64588095 + L2 LINE L2 2900 3252 -20 443 239 134 67 chr15 21107822 21107980 -64587774 - L1ME4a LINE L1 -1 6120 5974 1812 162 37 3 chr15 21107980 21108276 -64587478 - AluJo SINE Alu -4 308 3 443 239 134 67 chr15 21108276 21108485 -64587269 - L1ME4a LINE L1 -147 5974 5731 2044 135 30 0 chr15 21108522 21108825 -64586929 - AluSx SINE Alu 0 312 1 2142 119 0 0 chr15 21108979 21109273 -64586481 - AluSx SINE Alu -18 294 1 267 214 18 0 chr15 21109439 21109495 -64586259 - Charlie7 DNA MER1_type -2521 91 35 405 320 156 17 chr15 21109516 21109747 -64586007 - L2 LINE L2 -453 2861 2599 2077 150 0 0 chr15 21110856 21111162 -64584592 + AluSx SINE Alu 1 306 -6 385 272 29 15 chr15 21111162 21111298 -64584456 - HAL1b LINE L1 -450 898 761 8521 97 26 25 chr15 21111306 21112567 -64583187 - HSMAR2 DNA Mariner 0 1302 41 1431 168 7 42 chr15 21112595 21112880 -64582874 - AluJo SINE Alu -17 295 21 1894 151 7 0 chr15 21112958 21113237 -64582517 - AluSx SINE Alu -21 291 11 189 0 0 0 chr15 21113242 21113263 -64582491 + (T)n Simple_repeat Simple_repeat 1 21 0 818 314 8 8 chr15 21113645 21113884 -64581870 - MIR SINE MIR -20 242 4 425 247 143 7 chr15 21113904 21114058 -64581696 + MIR SINE MIR 12 186 -76 372 257 59 10 chr15 21114061 21114162 -64581592 + HAL1 LINE L1 1 106 -2401 1633 183 21 0 chr15 21114163 21114448 -64581306 + AluJb SINE Alu 1 291 -21 717 63 31 50 chr15 21114448 21114607 -64581147 + (GGAA)n Simple_repeat Simple_repeat 1 156 0 2529 74 0 0 chr15 21114610 21114921 -64580833 + AluY SINE Alu 1 311 0 1423 233 78 13 chr15 21114927 21115309 -64580445 + HAL1 LINE L1 94 500 -2007 537 220 25 92 chr15 21115299 21115581 -64580173 + HAL1 LINE L1 846 1108 -1399 * 2391 108 0 0 chr15 21115882 21116188 -64579566 - AluSx SINE Alu -6 306 1 559 225 45 18 chr15 21116206 21116317 -64579437 - MER81 DNA DNA 0 114 1 2037 121 3 3 chr15 21116650 21116955 -64578799 - AluSx SINE Alu 0 305 1 1485 238 57 7 chr15 21117131 21117551 -64578203 - MER113 DNA MER1_type? -3 518 78 1908 133 0 18 chr15 21118044 21118322 -64577432 - AluSx SINE Alu -27 285 13 2506 81 0 0 chr15 21118645 21118953 -64576801 - AluSx SINE Alu -4 308 1 2284 113 60 28 chr15 21119530 21119883 -64575871 - THE1B LTR MaLR 0 364 1 275 196 0 0 chr15 21120115 21120161 -64575593 - L2 LINE L2 -16 3256 3211 360 340 191 10 chr15 21120636 21120845 -64574909 - MIR SINE MIR -3 259 13 777 212 190 0 chr15 21120985 21121169 -64574585 - MIR SINE MIR -26 236 18 2376 70 0 23 chr15 21121187 21121486 -64574268 - AluY SINE Alu -19 292 1 2486 73 0 0 chr15 21121831 21122133 -64573621 + AluY SINE Alu 1 302 -9 2045 125 4 0 chr15 21122144 21122450 -64573304 + AluSg SINE Alu 1 307 0 2128 110 0 27 chr15 21122614 21122915 -64572839 - AluSg SINE Alu -17 293 1 725 161 51 22 chr15 21122948 21123085 -64572669 - L1M4 LINE L1 -354 5824 5684 1583 157 64 4 chr15 21123420 21123701 -64572053 - AluSx SINE Alu -14 298 1 213 193 35 18 chr15 21124450 21124507 -64571247 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 1411 132 29 0 chr15 21124513 21124717 -64571037 - AluJo SINE Alu -102 210 1 796 153 186 77 chr15 21125299 21125482 -64570272 - MER20 DNA MER1_type -16 203 1 735 197 8 8 chr15 21125484 21125616 -64570138 + FLAM_A SINE Alu 1 132 -1 2593 62 0 0 chr15 21125663 21125970 -64569784 - AluY SINE Alu 0 311 5 728 142 0 0 chr15 21126081 21126194 -64569560 + L1MB4 LINE L1 6063 6175 -5 2281 103 0 0 chr15 21126194 21126485 -64569269 - AluSg SINE Alu -19 291 1 1739 175 10 29 chr15 21126514 21126823 -64568931 + AluJo SINE Alu 1 303 -9 270 268 149 13 chr15 21127093 21127180 -64568574 - MIR3 SINE MIR -30 178 79 28508 25 0 1 chr15 21128125 21132063 -64563691 + L1PA2 LINE L1 2217 6153 -2 180 77 0 0 chr15 21132179 21132205 -64563549 + (CATGT)n Simple_repeat Simple_repeat 1 26 0 244 278 56 0 chr15 21132725 21132797 -64562957 - MIR SINE MIR -91 171 96 1869 231 82 24 chr15 21133138 21133893 -64561861 + L1ME3A LINE L1 4628 5438 -732 841 152 0 36 chr15 21133896 21134076 -64561678 + AluJo/FLAM SINE Alu 1 133 -169 1311 185 0 4 chr15 21134076 21134308 -64561446 + AluJo SINE Alu 82 312 0 1262 255 56 61 chr15 21134308 21134642 -64561112 + L1ME3A LINE L1 5429 5762 -408 2424 83 0 3 chr15 21134642 21134954 -64560800 + AluY SINE Alu 1 311 0 1262 255 56 61 chr15 21134954 21135047 -64560707 + L1ME3A LINE L1 5762 5854 -316 486 223 87 98 chr15 21135418 21135683 -64560071 + L1ME3A LINE L1 5909 6170 0 2299 97 0 7 chr15 21135935 21136235 -64559519 + AluSg SINE Alu 1 298 -12 274 257 122 14 chr15 21136363 21136511 -64559243 - L2 LINE L2 -1414 1900 1737 1407 174 7 56 chr15 21136660 21136930 -64558824 - AluJo SINE Alu -55 257 1 2324 82 23 7 chr15 21136934 21137239 -64558515 - AluSg SINE Alu 0 310 1 487 313 69 69 chr15 21137325 21137613 -64558141 + L2 LINE L2 2980 3267 -5 2102 118 10 0 chr15 21137934 21138230 -64557524 - AluSx SINE Alu -13 299 1 2374 82 0 19 chr15 21138244 21138561 -64557193 - AluY SINE Alu 0 311 1 2391 76 3 3 chr15 21138711 21139013 -64556741 + AluSg1 SINE Alu 1 302 -7 499 254 58 58 chr15 21139013 21139151 -64556603 - L1PB4 LINE L1 -4 6152 6011 1972 158 3 0 chr15 21139508 21139806 -64555948 + AluJb SINE Alu 1 299 -13 1744 163 67 0 chr15 21140165 21140435 -64555319 - AluJo SINE Alu -24 288 1 2194 105 0 7 chr15 21141144 21141438 -64554316 - AluSg1 SINE Alu -17 292 1 2085 69 0 0 chr15 21141449 21141725 -64554029 - AluY SINE Alu 0 313 38 2019 92 44 20 chr15 21141775 21142069 -64553685 - AluSg SINE Alu -9 301 1 1890 163 3 3 chr15 21142079 21142374 -64553380 - AluJb SINE Alu -17 295 1 398 215 37 47 chr15 21143024 21143131 -64552623 - MIR SINE MIR -66 196 91 45 19 0 0 chr15 21143290 21143342 -64552412 + AT_rich Low_complexity Low_complexity 1 52 0 3216 174 24 162 chr15 21143379 21143496 -64552258 + L1MD3 LINE L1 6871 7002 -993 1974 125 3 34 chr15 21143496 21143791 -64551963 + AluSx SINE Alu 1 286 -26 695 12 12 0 chr15 21143792 21143876 -64551878 + (TAGA)n Simple_repeat Simple_repeat 3 87 0 3216 174 24 162 chr15 21143876 21144047 -64551707 + L1MD3 LINE L1 7002 7195 -800 2314 104 3 0 chr15 21144047 21144354 -64551400 + AluSq SINE Alu 1 308 -5 3216 174 24 162 chr15 21144354 21144644 -64551110 + L1MD3 LINE L1 7195 7523 -472 887 173 0 0 chr15 21144644 21144777 -64550977 + FLAM_C SINE Alu 1 133 0 3216 174 24 162 chr15 21144777 21144812 -64550942 + L1MD3 LINE L1 7523 7561 -434 2442 85 0 3 chr15 21144812 21145118 -64550636 + AluSc SINE Alu 1 305 -4 3216 174 24 162 chr15 21145118 21145792 -64549962 + L1MD3 LINE L1 7561 7985 -10 2210 97 10 3 chr15 21145793 21146083 -64549671 + AluSx SINE Alu 1 292 -20 665 233 0 0 chr15 21146292 21146408 -64549346 - FLAM_A SINE Alu -17 116 1 219 229 33 0 chr15 21146488 21146549 -64549205 + (TA)n Simple_repeat Simple_repeat 2 64 0 2263 83 3 3 chr15 21147596 21147885 -64547869 + AluSq SINE Alu 1 289 -24 214 171 0 0 chr15 21147885 21147920 -64547834 + (CATATA)n Simple_repeat Simple_repeat 3 37 0 259 284 0 0 chr15 21147920 21148008 -64547746 - L1MC4 LINE L1 -1339 6703 6616 20739 43 52 3 chr15 21148092 21150681 -64545073 + L1P LINE L1 13 2728 -3418 515 153 0 0 chr15 21150790 21150875 -64544879 - MIR SINE MIR -67 195 111 862 183 0 0 chr15 21150876 21151007 -64544747 + FLAM_C SINE Alu 3 133 0 2069 127 0 0 chr15 21151020 21151303 -64544451 - AluSx SINE Alu -27 285 3 22 35 0 0 chr15 21151306 21151335 -64544419 + AT_rich Low_complexity Low_complexity 1 29 0 391 216 226 0 chr15 21151339 21151441 -64544313 - MIR SINE MIR -136 126 2 2085 122 0 3 chr15 21151614 21151920 -64543834 - AluSq SINE Alu 0 305 1 471 135 144 0 chr15 21153163 21153267 -64542487 + L1MA8 LINE L1 6163 6281 -10 656 154 18 9 chr15 21153300 21153410 -64542344 - FLAM_A SINE Alu -12 130 20 606 115 0 0 chr15 21153986 21154064 -64541690 + AluSp/q SINE Alu 216 293 -20 213 39 0 0 chr15 21154064 21154090 -64541664 + (TA)n Simple_repeat Simple_repeat 2 27 0 511 298 42 6 chr15 21154749 21154811 -64540943 + MER5B DNA MER1_type 1 59 -119 216 0 0 0 chr15 21154811 21154835 -64540919 + (TA)n Simple_repeat Simple_repeat 2 25 0 511 298 42 6 chr15 21154835 21154940 -64540814 + MER5B DNA MER1_type 59 174 -4 522 106 150 9 chr15 21154982 21155095 -64540659 - MER106A DNA MER1_type 0 236 108 583 207 9 26 chr15 21155142 21155258 -64540496 - AluJo SINE Alu -105 207 94 21 36 0 0 chr15 21155286 21155314 -64540440 + AT_rich Low_complexity Low_complexity 1 28 0 2297 82 3 36 chr15 21155314 21155620 -64540134 + AluSq SINE Alu 1 296 -17 1108 260 60 27 chr15 21155677 21155977 -64539777 - MLT1I LTR MaLR -21 388 79 2136 78 3 27 chr15 21156240 21156536 -64539218 + AluY SINE Alu 5 293 -18 2439 65 0 0 chr15 21157032 21157326 -64538428 + AluY SINE Alu 1 294 -17 2434 90 0 0 chr15 21158673 21158984 -64536770 - AluSq SINE Alu -2 311 1 21 0 0 0 chr15 21159080 21159101 -64536653 + AT_rich Low_complexity Low_complexity 1 21 0 201 318 182 0 chr15 21159176 21159264 -64536490 + MIR3 SINE MIR 59 162 -46 897 204 11 17 chr15 21159421 21159597 -64536157 + MER5B DNA MER1_type 4 178 0 1994 150 0 16 chr15 21159830 21160143 -64535611 + AluSq SINE Alu 1 308 -5 307 197 84 0 chr15 21160504 21160575 -64535179 - MIR SINE MIR -67 195 119 315 0 0 0 chr15 21160661 21160696 -64535058 + (TG)n Simple_repeat Simple_repeat 1 35 0 2216 118 0 10 chr15 21160774 21161079 -64534675 - AluSq SINE Alu -11 302 1 1038 85 0 0 chr15 21161594 21161724 -64534030 + AluSg/x SINE Alu 163 292 -18 2256 103 0 13 chr15 21161737 21161873 -64533881 + AluSx SINE Alu 1 137 -175 2061 102 27 7 chr15 21161873 21162168 -64533586 + AluSp SINE Alu 1 301 -12 2256 103 0 13 chr15 21162168 21162333 -64533421 + AluSx SINE Alu 137 298 -14 217 256 0 0 chr15 21162472 21162511 -64533243 + L2 LINE L2 2582 2620 -694 889 105 0 0 chr15 21162597 21162721 -64533033 - AluSg/x SINE Alu -4 306 183 654 106 21 0 chr15 21162725 21162819 -64532935 - AluSc SINE Alu -212 97 2 345 365 42 69 chr15 21162828 21163125 -64532629 + L2 LINE L2 2697 2981 -291 1703 167 0 46 chr15 21163125 21163460 -64532294 - AluJb SINE Alu 0 312 1 345 365 42 69 chr15 21163460 21163648 -64532106 + L2 LINE L2 2981 3172 -100 184 306 41 0 chr15 21163708 21163757 -64531997 - L2 LINE L2 -93 3179 3129 1102 208 0 0 chr15 21164472 21164645 -64531109 - FAM SINE Alu -2 173 1 7588 51 5 3 chr15 21164742 21166267 -64529487 + L1PA6 LINE L1 4627 6152 -2 2154 213 63 27 chr15 21166471 21166986 -64528768 - HsTC2c DNA Tc2 -1259 639 103 1508 76 0 0 chr15 21166986 21167170 -64528584 + AluSq SINE Alu 5 188 -125 285 130 0 0 chr15 21167170 21167216 -64528538 + AluSq SINE Alu 255 300 -1 3507 202 21 70 chr15 21167321 21168340 -64527414 + LTR5 LTR ERVK 1 969 0 964 182 0 17 chr15 21168566 21168742 -64527012 + AluJb SINE Alu 136 308 -4 21 0 0 0 chr15 21168937 21168958 -64526796 + AT_rich Low_complexity Low_complexity 1 21 0 1272 189 7 33 chr15 21168964 21169265 -64526489 + AluJo SINE Alu 1 293 -19 1624 178 0 14 chr15 21170402 21170677 -64525077 + AluJo SINE Alu 11 281 -31 2430 37 0 37 chr15 21170677 21170970 -64524784 - AluY SINE Alu -12 299 17 198 0 0 0 chr15 21170985 21171007 -64524747 + (A)n Simple_repeat Simple_repeat 1 22 0 2339 95 3 3 chr15 21171007 21171311 -64524443 + AluSp SINE Alu 1 304 -9 1039 191 10 21 chr15 21171332 21171526 -64524228 + AluJb SINE Alu 112 303 -9 1930 148 0 19 chr15 21171775 21172093 -64523661 - AluSx SINE Alu 0 312 1 28 91 0 0 chr15 21172856 21172933 -64522821 + AT_rich Low_complexity Low_complexity 1 77 0 2181 117 0 10 chr15 21173051 21173350 -64522404 + AluSx SINE Alu 1 296 -16 21 57 0 0 chr15 21173381 21173416 -64522338 + AT_rich Low_complexity Low_complexity 1 35 0 2351 75 3 0 chr15 21173713 21174008 -64521746 - AluY SINE Alu -15 296 1 2411 78 3 0 chr15 21174495 21174791 -64520963 - AluY SINE Alu -14 297 1 25 0 0 0 chr15 21175176 21175201 -64520553 + AT_rich Low_complexity Low_complexity 1 25 0 1029 236 82 0 chr15 21175237 21175470 -64520284 + MER58 DNA MER1_type 2 253 -88 1145 131 98 95 chr15 21175470 21175526 -64520228 + L1MD3 LINE L1 7690 7744 -251 1973 125 3 22 chr15 21175526 21175837 -64519917 + AluSg SINE Alu 1 305 -5 1145 131 98 95 chr15 21175837 21176085 -64519669 + L1MD3 LINE L1 7744 7995 0 22 0 0 0 chr15 21176138 21176160 -64519594 + AT_rich Low_complexity Low_complexity 1 22 0 242 325 0 13 chr15 21176510 21176587 -64519167 + MIR SINE MIR 28 103 -159 2380 99 0 0 chr15 21176587 21176889 -64518865 - AluSg SINE Alu -8 302 1 2164 96 7 3 chr15 21176902 21177193 -64518561 - AluY SINE Alu -19 292 1 270 287 11 11 chr15 21177376 21177463 -64518291 - AluY SINE Alu -201 100 14 2508 72 0 0 chr15 21177691 21177997 -64517757 + AluY SINE Alu 1 306 -5 180 0 0 0 chr15 21180391 21180411 -64515343 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2045 123 3 10 chr15 21180411 21180694 -64515060 - AluSx SINE Alu -29 283 1 1629 162 46 39 chr15 21180705 21180864 -64514890 - AluJb SINE Alu -26 286 123 1935 175 0 6 chr15 21180864 21181178 -64514576 - AluJb SINE Alu 0 312 1 1629 162 46 39 chr15 21181178 21181302 -64514452 - AluJb SINE Alu -189 123 1 1402 193 58 0 chr15 21181339 21181614 -64514140 - AluJo SINE Alu -21 291 1 1125 210 16 0 chr15 21181620 21181806 -64513948 + MER5A DNA MER1_type 1 189 0 2486 88 0 0 chr15 21182129 21182435 -64513319 - AluY SINE Alu -4 307 2 2298 79 7 13 chr15 21182748 21183052 -64512702 - AluSg1 SINE Alu -7 302 1 1898 146 3 37 chr15 21183300 21183623 -64512131 - AluJo SINE Alu 0 312 1 236 239 0 45 chr15 21183815 21183882 -64511872 + L2 LINE L2 3201 3264 -8 615 255 193 9 chr15 21183896 21184108 -64511646 + MIR SINE MIR 12 262 0 2007 104 54 0 chr15 21184108 21184388 -64511366 + AluSq SINE Alu 1 295 -18 2294 109 7 0 chr15 21184600 21184903 -64510851 + AluSx SINE Alu 1 305 -7 1857 144 3 30 chr15 21185025 21185330 -64510424 + AluJb SINE Alu 1 297 -15 240 111 0 0 chr15 21185332 21185368 -64510386 + (TA)n Simple_repeat Simple_repeat 1 36 0 899 214 0 0 chr15 21185636 21185804 -64509950 - FRAM SINE Alu -1 175 8 24 0 0 0 chr15 21185813 21185837 -64509917 + AT_rich Low_complexity Low_complexity 1 24 0 2191 61 0 103 chr15 21185837 21186167 -64509587 - AluY SINE Alu -15 296 1 1292 98 0 0 chr15 21186169 21186333 -64509421 - AluSq SINE Alu -16 297 134 1988 85 53 11 chr15 21186333 21186616 -64509138 - AluY SINE Alu -16 295 1 191 62 62 0 chr15 21186889 21186921 -64508833 + T-rich Low_complexity Low_complexity 3 36 0 216 0 0 0 chr15 21186955 21186979 -64508775 + (TG)n Simple_repeat Simple_repeat 1 24 0 2165 104 0 4 chr15 21186979 21187259 -64508495 - AluSx SINE Alu -33 279 1 617 250 17 40 chr15 21187323 21187499 -64508255 - MER5B DNA MER1_type 0 178 7 1046 217 9 24 chr15 21187527 21187739 -64508015 - MER3 DNA MER1_type 0 209 1 21 36 0 0 chr15 21187872 21187900 -64507854 + AT_rich Low_complexity Low_complexity 1 28 0 1716 173 25 3 chr15 21187904 21188188 -64507566 + AluJo SINE Alu 1 290 -22 198 0 0 0 chr15 21188188 21188210 -64507544 + (GA)n Simple_repeat Simple_repeat 2 23 0 8656 181 66 15 chr15 21188210 21189821 -64505933 + L1MA3 LINE L1 17 1710 -5855 1042 168 0 0 chr15 21189821 21189976 -64505778 + AluJb SINE Alu 147 301 -11 15462 154 21 57 chr15 21189976 21190034 -64505720 + L1MA3 LINE L1 3627 3686 -4038 2525 60 3 0 chr15 21190034 21190333 -64505421 + AluSp SINE Alu 1 300 -13 15462 154 21 57 chr15 21190333 21192351 -64503403 + L1MA3 LINE L1 3686 5775 -1949 2466 76 0 3 chr15 21192351 21192655 -64503099 + AluY SINE Alu 1 303 -8 15462 154 21 57 chr15 21192655 21193686 -64502068 + L1MA3 LINE L1 5775 6540 -1184 2282 105 20 0 chr15 21193686 21193991 -64501763 + AluSq SINE Alu 1 311 -2 15462 154 21 57 chr15 21193991 21195134 -64500620 + L1MA3 LINE L1 6540 7723 -1 413 180 22 11 chr15 21195199 21195288 -64500466 + L1MC1 LINE L1 2639 2728 -3418 1768 30 0 0 chr15 21195292 21195546 -64500208 + L1PA4 LINE L1 5929 6182 0 237 259 12 0 chr15 21195580 21195661 -64500093 + L1MC1 LINE L1 2752 2833 -3313 9393 223 28 27 chr15 21196971 21197945 -64497809 + L1MC1 LINE L1 2821 3793 -2353 1653 160 32 55 chr15 21197945 21198257 -64497497 + AluJo SINE Alu 1 305 -7 9393 223 28 27 chr15 21198257 21199129 -64496625 + L1MC1 LINE L1 3793 4663 -1483 2125 130 3 0 chr15 21199129 21199430 -64496324 + AluSx SINE Alu 2 303 -9 9393 223 28 27 chr15 21199430 21199931 -64495823 + L1MC1 LINE L1 4663 5173 -973 2249 79 23 3 chr15 21199931 21200234 -64495520 + AluY SINE Alu 1 309 -2 9393 223 28 27 chr15 21200234 21200358 -64495396 + L1MC1 LINE L1 5173 5295 -851 2325 74 0 3 chr15 21200362 21200677 -64495077 + AluY SINE Alu 1 314 0 32539 27 3 0 chr15 21200677 21205264 -64490490 + L1PA3 LINE L1 1556 6155 0 5593 149 39 33 chr15 21205261 21205298 -64490456 + L1MC1 LINE L1 5264 5299 -1034 * 1854 141 0 40 chr15 21205298 21205602 -64490152 + AluSx SINE Alu 1 292 -20 981 207 0 0 chr15 21205607 21205771 -64489983 + FRAM SINE Alu 3 166 0 5593 149 39 33 chr15 21205771 21206301 -64489453 + L1MC1 LINE L1 5302 5850 -483 1636 194 27 13 chr15 21206301 21206600 -64489154 + AluJb SINE Alu 1 303 -9 5593 149 39 33 chr15 21206600 21207067 -64488687 + L1MC1 LINE L1 5850 6312 -21 2577 58 0 0 chr15 21207072 21207380 -64488374 + AluY SINE Alu 1 308 -3 1670 158 37 7 chr15 21207429 21207701 -64488053 + AluJo SINE Alu 14 293 -19 828 241 12 6 chr15 21207772 21207934 -64487820 + FRAM SINE Alu 1 163 -13 27 0 0 0 chr15 21208063 21208090 -64487664 + AT_rich Low_complexity Low_complexity 1 27 0 672 200 118 0 chr15 21208132 21208322 -64487432 + MER58A DNA MER1_type 42 224 0 1731 250 46 78 chr15 21208344 21208570 -64487184 - L1MEc LINE L1 -4621 2204 1972 2211 92 14 3 chr15 21208570 21208862 -64486892 + AluSc SINE Alu 1 295 -14 1731 250 46 78 chr15 21208862 21209192 -64486562 - L1MEc LINE L1 -4853 1972 1633 1521 136 0 56 chr15 21209192 21209464 -64486290 - AluSx SINE Alu 0 302 45 1731 250 46 78 chr15 21209464 21209949 -64485805 - L1MEc LINE L1 -5192 1633 1057 257 88 0 0 chr15 21210065 21210099 -64485655 - MLT2A2 LTR ERVL -7 446 413 483 27 27 14 chr15 21210100 21210174 -64485580 + (TA)n Simple_repeat Simple_repeat 2 76 0 312 137 0 0 chr15 21210241 21210292 -64485462 + (TG)n Simple_repeat Simple_repeat 2 52 0 225 207 0 17 chr15 21210293 21210351 -64485403 + L1MC4 LINE L1 6667 6723 -1319 734 181 105 59 chr15 21210361 21210599 -64485155 + L2 LINE L2 3022 3270 -43 688 101 0 0 chr15 21210599 21210688 -64485066 + AluSg1 SINE Alu 2 90 -219 231 105 88 53 chr15 21210698 21210755 -64484999 - L1MCa LINE L1 -4362 2064 2006 225 0 0 0 chr15 21210755 21210780 -64484974 + (CA)n Simple_repeat Simple_repeat 1 25 0 243 0 0 0 chr15 21210780 21210814 -64484940 - MLT2A1 LTR ERVL -44 400 367 236 196 0 0 chr15 21210817 21210863 -64484891 + Alu SINE Alu 251 296 -4 2789 91 22 25 chr15 21210922 21211329 -64484425 - MLT2A1 LTR ERVL -38 406 1 821 221 0 0 chr15 21211468 21211613 -64484141 + FRAM SINE Alu 1 140 -36 1285 206 8 4 chr15 21211768 21212016 -64483738 - AluJo SINE Alu -63 249 1 250 279 44 95 chr15 21212108 21212266 -64483488 - L1MEc LINE L1 -5969 856 707 331 331 26 7 chr15 21212269 21212423 -64483331 - L1MEc LINE L1 -6203 622 466 500 293 54 78 chr15 21212963 21213205 -64482549 - MIR SINE MIR -8 254 19 260 289 289 8 chr15 21213217 21213345 -64482409 - MER5B DNA MER1_type -14 164 1 1015 215 198 38 chr15 21213832 21214232 -64481522 + L2 LINE L2 2809 3272 -41 2616 24 0 0 chr15 21214232 21214523 -64481231 + AluY SINE Alu 1 291 -20 2246 118 0 0 chr15 21214530 21214835 -64480919 + AluSg SINE Alu 1 305 -5 2095 134 0 0 chr15 21214875 21215188 -64480566 + AluSx SINE Alu 1 313 0 248 146 0 0 chr15 21215382 21215423 -64480331 - MSTA LTR MaLR 0 428 388 871 154 0 0 chr15 21215423 21215540 -64480214 + FLAM_C SINE Alu 1 117 -16 2355 103 92 8 chr15 21215568 21215938 -64479816 - MSTA LTR MaLR -27 401 1 2106 112 0 11 chr15 21216061 21216375 -64479379 - AluSg SINE Alu 0 311 1 1605 171 20 30 chr15 21216551 21216850 -64478904 + AluJo SINE Alu 1 296 -16 2271 67 14 3 chr15 21217011 21217317 -64478437 + AluSp SINE Alu 1 309 0 1350 189 102 4 chr15 21217336 21217600 -64478154 - AluJo SINE Alu -18 294 5 23 0 0 0 chr15 21217829 21217852 -64477902 + AT_rich Low_complexity Low_complexity 1 23 0 1816 187 3 0 chr15 21218147 21218447 -64477307 + AluJo SINE Alu 1 301 -11 1583 170 0 11 chr15 21218459 21218730 -64477024 - AluSx SINE Alu -44 268 1 344 267 131 29 chr15 21218857 21219063 -64476691 + L1ME4a LINE L1 5874 6100 -21 2193 73 0 25 chr15 21219070 21219409 -64476345 - AluY SINE Alu 0 334 3 1572 114 0 9 chr15 21219411 21219631 -64476123 - AluSq SINE Alu -11 302 85 2137 125 14 3 chr15 21219804 21220101 -64475653 - AluSg SINE Alu -10 300 1 445 252 61 0 chr15 21220104 21220219 -64475535 - L2 LINE L2 -1 3312 3191 1963 123 0 23 chr15 21220251 21220551 -64475203 + AluSx SINE Alu 1 293 -19 180 0 0 0 chr15 21220675 21220695 -64475059 + (T)n Simple_repeat Simple_repeat 1 20 0 22 56 0 0 chr15 21221808 21221844 -64473910 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr15 21222674 21222700 -64473054 + AT_rich Low_complexity Low_complexity 1 26 0 959 107 0 8 chr15 21222878 21223009 -64472745 - FLAM_C SINE Alu -3 130 1 2148 103 0 67 chr15 21223353 21223683 -64472071 - AluSx SINE Alu -4 308 1 1196 110 12 0 chr15 21223837 21224000 -64471754 + AluSg/x SINE Alu 141 305 -7 249 149 45 0 chr15 21224149 21224216 -64471538 + (TA)n Simple_repeat Simple_repeat 2 71 0 255 307 78 45 chr15 21224359 21224538 -64471216 - L1ME LINE L1 -463 5658 5474 1766 190 0 13 chr15 21224720 21225036 -64470718 - AluJo SINE Alu 0 312 1 25 0 0 0 chr15 21225134 21225159 -64470595 + AT_rich Low_complexity Low_complexity 1 25 0 4694 170 40 75 chr15 21225174 21225387 -64470367 - L1MB5 LINE L1 -28 6146 5927 2253 103 0 13 chr15 21225387 21225521 -64470233 + AluSc SINE Alu 1 135 -174 2490 58 0 3 chr15 21225521 21225816 -64469938 + AluY SINE Alu 1 294 -17 2253 103 0 13 chr15 21225816 21225981 -64469773 + AluSc SINE Alu 135 296 -13 4694 170 40 75 chr15 21225981 21226616 -64469138 - L1MB5 LINE L1 -247 5927 5271 1618 177 0 40 chr15 21226616 21226915 -64468839 - AluJo SINE Alu -25 287 1 4694 170 40 75 chr15 21226915 21227645 -64468109 - L1MB5 LINE L1 -903 5271 4517 1823 176 3 7 chr15 21227645 21227947 -64467807 + AluJo SINE Alu 1 301 -11 1955 147 0 26 chr15 21227949 21228261 -64467493 + AluJb SINE Alu 1 304 -8 4694 170 40 75 chr15 21228261 21228537 -64467217 - L1MB5 LINE L1 -1658 4516 4331 2087 133 7 0 chr15 21228537 21228838 -64466916 + AluSx SINE Alu 1 303 -9 4694 170 40 75 chr15 21228838 21228881 -64466873 - L1MB5 LINE L1 -1843 4331 4288 806 118 0 0 chr15 21229026 21229136 -64466618 - AluSg/x SINE Alu -13 297 188 1610 104 9 0 chr15 21229138 21229349 -64466405 + AluSg/x SINE Alu 89 301 -11 21 36 0 0 chr15 21229413 21229441 -64466313 + AT_rich Low_complexity Low_complexity 1 28 0 1982 140 7 0 chr15 21229450 21229742 -64466012 + AluJb SINE Alu 1 294 -18 657 204 9 9 chr15 21229753 21229866 -64465888 - FLAM_A SINE Alu -17 116 4 2419 68 0 7 chr15 21229878 21230173 -64465581 - AluY SINE Alu -18 293 1 1824 157 7 0 chr15 21230304 21230614 -64465140 + AluSx SINE Alu 1 312 0 1872 162 10 3 chr15 21230734 21231036 -64464718 - AluJb SINE Alu -8 304 1 2417 76 3 13 chr15 21231622 21231925 -64463829 - AluSp SINE Alu -13 300 1 728 193 41 7 chr15 21231925 21232070 -64463684 - MSTC LTR MaLR -215 150 1 541 252 34 68 chr15 21232233 21232289 -64463465 + L1M4 LINE L1 3182 3238 -2908 2473 63 0 10 chr15 21232289 21232590 -64463164 + AluY SINE Alu 1 298 -13 541 252 34 68 chr15 21232590 21232855 -64462899 + L1M4 LINE L1 3238 3492 -2654 1016 151 5 16 chr15 21232896 21233107 -64462647 - AluSp SINE Alu 0 311 103 2111 58 4 0 chr15 21233679 21233936 -64461818 + AluY SINE Alu 1 258 -53 29 0 0 0 chr15 21234467 21234496 -64461258 + GC_rich Low_complexity Low_complexity 1 29 0 1348 114 5 30 chr15 21234782 21234846 -64460908 - AluSp SINE Alu -116 197 133 2403 69 0 16 chr15 21234846 21235151 -64460603 - AluY SINE Alu -11 300 1 1348 114 5 30 chr15 21235151 21235288 -64460466 - AluSp SINE Alu -180 133 1 857 218 6 6 chr15 21235295 21235465 -64460289 - FAM SINE Alu -15 170 1 2280 98 3 0 chr15 21235487 21235782 -64459972 - AluSc SINE Alu -13 296 1 2380 77 3 3 chr15 21235855 21236152 -64459602 - AluSq SINE Alu -16 297 1 1820 171 0 3 chr15 21236220 21236513 -64459241 - AluJo SINE Alu -20 292 1 1705 192 0 7 chr15 21236514 21236806 -64458948 - AluJo SINE Alu -22 290 1 354 212 152 0 chr15 21236974 21237073 -64458681 - MIR SINE MIR -9 253 140 2386 84 7 0 chr15 21237300 21237599 -64458155 - AluSc SINE Alu -8 301 1 283 111 0 0 chr15 21237600 21237645 -64458109 - AluJo SINE Alu -7 295 251 1166 168 20 5 chr15 21237645 21237841 -64457913 - AluJo SINE Alu -113 199 1 410 244 63 24 chr15 21237926 21238053 -64457701 + MLT1J LTR MaLR 377 508 -3 348 244 110 39 chr15 21238056 21238183 -64457571 - MIR SINE MIR -119 143 8 704 175 76 29 chr15 21238244 21238415 -64457339 - LTR16A LTR ERVL -256 194 16 272 318 28 9 chr15 21238444 21238551 -64457203 - MER117 DNA MER1_type -32 165 57 2185 120 0 0 chr15 21238554 21238855 -64456899 - AluSg SINE Alu -9 301 1 1138 227 25 43 chr15 21238901 21239179 -64456575 + LTR16A LTR ERVL 178 450 0 560 271 78 92 chr15 21239334 21239701 -64456053 + MLT1K LTR MaLR 154 516 -72 2348 94 7 0 chr15 21239701 21239999 -64455755 - AluSg SINE Alu -10 300 1 560 271 78 92 chr15 21239999 21240067 -64455687 + MLT1K LTR MaLR 516 583 -5 2318 109 0 0 chr15 21240297 21240601 -64455153 - AluSc SINE Alu -5 304 1 1767 145 13 35 chr15 21240747 21241064 -64454690 + AluJb SINE Alu 1 310 -2 3078 126 84 0 chr15 21241162 21241662 -64454092 - L1MC3 LINE L1 0 7785 7244 2859 13 0 0 chr15 21241801 21242112 -64453642 + AluY SINE Alu 1 311 0 239 167 347 0 chr15 21242157 21242229 -64453525 + MIR SINE MIR 65 161 -101 1074 138 0 0 chr15 21242371 21242531 -64453223 - AluSg/x SINE Alu -16 294 135 218 245 0 0 chr15 21243203 21243252 -64452502 + MIR SINE MIR 93 141 -121 1194 45 0 0 chr15 21243891 21244048 -64451706 + (GA)n Simple_repeat Simple_repeat 1 157 0 2263 87 3 7 chr15 21245956 21246276 -64449478 - AluSp SINE Alu 0 319 1 1057 166 41 6 chr15 21246282 21246451 -64449303 - FAM SINE Alu 0 175 1 204 330 140 52 chr15 21246544 21246944 -64448810 + L2 LINE L2 1725 2159 -1155 435 266 26 0 chr15 21247057 21247170 -64448584 - MER103 DNA DNA -43 123 8 231 114 0 0 chr15 21247341 21247376 -64448378 + (TA)n Simple_repeat Simple_repeat 1 35 0 2346 82 3 0 chr15 21247376 21247669 -64448085 - AluY SINE Alu -17 294 1 676 192 23 15 chr15 21247694 21247824 -64447930 - FLAM_C SINE Alu 0 133 3 1748 164 30 7 chr15 21247976 21248281 -64447473 - AluJo SINE Alu 0 312 1 342 169 136 0 chr15 21248336 21248395 -64447359 - AluJ/FLAM SINE Alu -235 67 1 3825 134 108 143 chr15 21248399 21248969 -64446785 - L1MC3 LINE L1 -27 7758 7169 230 296 57 0 chr15 21248969 21249057 -64446697 - MLT1F1 LTR MaLR -442 125 33 3825 134 108 143 chr15 21249057 21249469 -64446285 - L1MC3 LINE L1 -616 7169 6727 1791 112 34 99 chr15 21249469 21249606 -64446148 + AluSx SINE Alu 1 145 -167 2333 84 7 7 chr15 21249606 21249903 -64445851 + AluSg SINE Alu 1 297 -13 1791 112 34 99 chr15 21249903 21250087 -64445667 + AluSx SINE Alu 145 301 -11 3825 134 108 143 chr15 21250087 21250122 -64445632 - L1MC3 LINE L1 -1058 6727 6692 2095 131 3 0 chr15 21250255 21250553 -64445201 - AluSx SINE Alu -13 299 1 2111 161 58 26 chr15 21250695 21251073 -64444681 - MLT1B LTR MaLR 0 390 1 333 47 0 0 chr15 21251085 21251128 -64444626 + (CA)n Simple_repeat Simple_repeat 1 43 0 981 225 0 17 chr15 21251219 21251392 -64444362 - FAM SINE Alu -5 170 1 201 74 0 0 chr15 21251523 21251550 -64444204 + (CA)n Simple_repeat Simple_repeat 2 28 0 204 256 134 12 chr15 21251716 21251798 -64443956 + MIR SINE MIR 143 234 -28 2367 73 0 32 chr15 21252727 21253043 -64442711 - AluY SINE Alu -5 306 1 2346 96 0 10 chr15 21253043 21253344 -64442410 - AluSg SINE Alu -12 298 1 2319 102 0 37 chr15 21253427 21253751 -64442003 - AluSq SINE Alu -1 312 1 1596 175 72 103 chr15 21253947 21254422 -64441332 + MLT1C LTR MaLR 8 467 0 2099 90 0 0 chr15 21254468 21254734 -64441020 - AluSx SINE Alu -12 300 35 243 267 199 80 chr15 21254768 21254944 -64440810 + MIR3 SINE MIR 2 198 -10 1524 214 23 0 chr15 21254999 21255303 -64440451 + AluJo SINE Alu 1 311 -1 494 188 15 15 chr15 21255320 21255453 -64440301 + GA-rich Low_complexity Low_complexity 1 133 0 688 159 0 9 chr15 21256321 21256428 -64439326 - FRAM SINE Alu -77 99 1 224 184 46 83 chr15 21256431 21256540 -64439214 + L2 LINE L2 1945 2049 -1265 216 358 22 60 chr15 21256597 21256731 -64439023 - L2 LINE L2 0 3272 3144 1019 146 0 7 chr15 21256937 21257128 -64438626 + AluSg/x SINE Alu 133 322 0 1711 166 6 45 chr15 21257550 21257718 -64438036 - AluJo SINE Alu -11 301 149 2060 131 24 0 chr15 21257718 21258015 -64437739 - AluSx SINE Alu -8 304 1 1711 166 6 45 chr15 21258015 21258159 -64437595 - AluJo SINE Alu -163 149 1 9962 115 64 78 chr15 21258161 21258216 -64437538 - Tigger1 DNA MER2_type -628 1790 1736 2417 100 3 0 chr15 21258216 21258527 -64437227 - AluSq SINE Alu -1 312 1 9962 115 64 78 chr15 21258527 21258567 -64437187 - Tigger1 DNA MER2_type -682 1736 1697 1517 183 11 11 chr15 21258567 21258840 -64436914 - AluJo SINE Alu -39 273 1 9962 115 64 78 chr15 21258840 21258995 -64436759 - Tigger1 DNA MER2_type -721 1697 1541 1689 162 39 7 chr15 21258995 21259279 -64436475 - AluJb SINE Alu -19 293 1 9962 115 64 78 chr15 21259279 21259293 -64436461 - Tigger1 DNA MER2_type -877 1541 1528 1826 162 7 0 chr15 21259293 21259583 -64436171 - AluJb SINE Alu -20 292 1 9962 115 64 78 chr15 21259583 21261130 -64434624 - Tigger1 DNA MER2_type -890 1528 1 2412 89 0 0 chr15 21261195 21261497 -64434257 - AluY SINE Alu -9 302 1 3359 140 35 12 chr15 21262027 21262600 -64433154 - L1MB4 LINE L1 -2 6178 5593 771 203 43 0 chr15 21262600 21262738 -64433016 - AluJb SINE Alu -24 288 145 2452 135 30 17 chr15 21262738 21263282 -64432472 + L1MA9 LINE L1 5107 5658 -633 593 133 23 10 chr15 21263282 21263453 -64432301 + L1MA9 LINE L1 5974 6302 -10 717 297 72 14 chr15 21263633 21263855 -64431899 - MIR SINE MIR 0 262 28 2065 140 0 0 chr15 21263877 21264169 -64431585 - AluSx SINE Alu -20 292 1 1100 147 82 82 chr15 21264348 21264416 -64431338 + AluJo SINE Alu 40 107 -205 204 40 0 0 chr15 21264416 21264441 -64431313 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 303 28 0 0 chr15 21264440 21264476 -64431278 + (TA)n Simple_repeat Simple_repeat 1 36 0 1100 147 82 82 chr15 21264441 21264475 -64431279 + AluJo SINE Alu 107 140 -172 315 49 0 0 chr15 21264475 21264516 -64431238 + (CA)n Simple_repeat Simple_repeat 2 42 0 1100 147 82 82 chr15 21264516 21264692 -64431062 + AluJo SINE Alu 139 284 -28 2299 103 0 0 chr15 21264722 21265022 -64430732 + AluSg SINE Alu 1 300 -10 250 278 78 11 chr15 21265496 21265586 -64430168 - MLT1I LTR MaLR -311 98 3 2167 98 0 0 chr15 21265655 21265930 -64429824 - AluSx SINE Alu -32 280 6 558 324 159 22 chr15 21266048 21266637 -64429117 + L2 LINE L2 925 1673 -1641 2142 96 3 23 chr15 21266649 21266784 -64428970 + AluSq SINE Alu 1 137 -176 2287 96 3 3 chr15 21266784 21267085 -64428669 + AluSg SINE Alu 1 301 -9 2142 96 3 23 chr15 21267085 21267250 -64428504 + AluSq SINE Alu 137 295 -18 229 343 121 0 chr15 21267380 21267587 -64428167 + L2 LINE L2 2037 2268 -1046 281 278 14 0 chr15 21267589 21267661 -64428093 + L2 LINE L2 3188 3260 -12 229 247 55 41 chr15 21267738 21267811 -64427943 + L2 LINE L2 3197 3270 -2 2550 78 0 0 chr15 21267941 21268250 -64427504 + AluY SINE Alu 1 309 -2 2343 104 0 0 chr15 21268262 21268561 -64427193 + AluSq SINE Alu 1 299 -14 613 221 0 21 chr15 21268815 21268960 -64426794 + MIR SINE MIR 121 262 0 466 260 120 7 chr15 21269013 21269163 -64426591 + MER5B DNA MER1_type 2 168 -10 409 136 0 0 chr15 21270273 21270332 -64425422 + FLAM_A SINE Alu 74 132 -10 2355 76 0 3 chr15 21270459 21270761 -64424993 + AluSg SINE Alu 1 301 -9 1042 199 0 5 chr15 21270769 21270960 -64424794 + AluJb SINE Alu 82 271 -41 1142 180 0 6 chr15 21271186 21271369 -64424385 + AluJb SINE Alu 108 289 -23 498 329 110 48 chr15 21271597 21271907 -64423847 + L2 LINE L2 2175 2503 -811 1392 172 132 17 chr15 21271992 21272288 -64423466 - MER58B DNA MER1_type -11 330 1 389 323 82 65 chr15 21272294 21272411 -64423343 + L2 LINE L2 2592 2706 -566 2053 146 0 3 chr15 21272411 21272712 -64423042 + AluSx SINE Alu 1 300 -12 389 323 82 65 chr15 21272712 21273203 -64422551 + L2 LINE L2 2706 3207 -65 1651 179 10 30 chr15 21273204 21273505 -64422249 - AluJo SINE Alu -17 295 1 1807 176 0 7 chr15 21273568 21273874 -64421880 - AluJb SINE Alu -8 304 1 1865 181 0 36 chr15 21273900 21274287 -64421467 - L1MB7 LINE L1 -19 6165 5793 1660 162 23 43 chr15 21274288 21274590 -64421164 - AluJo SINE Alu -16 296 1 246 402 60 21 chr15 21274783 21275017 -64420737 + L2 LINE L2 2815 3057 -215 1799 159 14 0 chr15 21275175 21275470 -64420284 + AluJo SINE Alu 1 299 -13 721 203 10 45 chr15 21275482 21275757 -64419997 + L1MD2 LINE L1 6034 6349 -10 1625 180 20 27 chr15 21275757 21276051 -64419703 + AluJb SINE Alu 1 292 -20 2112 113 3 0 chr15 21276071 21276362 -64419392 + AluSx SINE Alu 1 292 -20 181 87 22 43 chr15 21277451 21277497 -64418257 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr15 21278414 21278442 -64417312 + AT_rich Low_complexity Low_complexity 1 28 0 1286 69 6 0 chr15 21279005 21279165 -64416589 - L1PA12 LINE L1 0 6168 6008 2409 88 0 7 chr15 21279967 21280274 -64415480 + AluSg SINE Alu 1 305 -5 2096 108 27 0 chr15 21280998 21281294 -64414460 - AluSp SINE Alu -9 304 1 2794 255 76 34 chr15 21281296 21281485 -64414269 + L1M4 LINE L1 3543 3723 -2423 2290 91 7 3 chr15 21281485 21281783 -64413971 + AluSx SINE Alu 1 299 -13 2794 255 76 34 chr15 21281783 21282754 -64413000 + L1M4 LINE L1 3723 4752 -1394 594 172 0 0 chr15 21282755 21282869 -64412885 - AluSg/x SINE Alu 0 310 197 2055 112 0 4 chr15 21282869 21283137 -64412617 - AluSx SINE Alu -45 267 1 512 202 11 0 chr15 21283137 21283231 -64412523 - MER2 DNA MER2_type -247 98 4 704 150 21 144 chr15 21283242 21283429 -64412325 - MER77 LTR ERV1 -410 195 32 557 179 19 19 chr15 21283434 21283540 -64412214 - Tigger3(Golem) DNA MER2_type -6 3023 2918 2101 71 41 37 chr15 21284158 21284452 -64411302 - AluY SINE Alu -16 295 1 1057 126 27 126 chr15 21284647 21284704 -64411050 - LTR49-int LTR ERV1 -3200 3131 3070 2212 104 0 0 chr15 21284704 21285008 -64410746 + AluSc SINE Alu 1 280 -29 1057 126 27 126 chr15 21285008 21285217 -64410537 - LTR49-int LTR ERV1 -3261 3070 2907 2032 129 7 10 chr15 21285217 21285511 -64410243 + AluSx SINE Alu 1 293 -19 21 36 0 0 chr15 21285511 21285539 -64410215 + AT_rich Low_complexity Low_complexity 1 28 0 636 146 0 27 chr15 21285596 21285706 -64410048 - LTR49-int LTR ERV1 -3427 2904 2798 2615 61 0 0 chr15 21286342 21286652 -64409102 + AluY SINE Alu 1 310 -1 216 0 0 0 chr15 21286653 21286677 -64409077 + (CA)n Simple_repeat Simple_repeat 1 24 0 267 367 140 21 chr15 21286704 21287184 -64408570 + L2 LINE L2 2081 2617 -697 215 350 0 0 chr15 21287175 21287235 -64408519 - L2 LINE L2 -55 3258 3199 * 868 182 110 0 chr15 21287444 21287598 -64408156 - FRAM SINE Alu -6 170 1 2299 97 0 10 chr15 21287802 21288112 -64407642 - AluSq SINE Alu -6 307 1 2265 76 59 0 chr15 21288857 21289147 -64406607 + AluSq SINE Alu 1 307 -6 183 42 0 0 chr15 21289331 21289355 -64406399 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 1787 109 8 8 chr15 21289463 21289720 -64406034 - AluSp SINE Alu -13 300 44 * 2390 70 27 0 chr15 21289719 21290019 -64405735 - AluY SINE Alu -3 308 1 207 69 0 0 chr15 21290242 21290271 -64405483 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 798 192 16 0 chr15 21290276 21290401 -64405353 - AluJ SINE Alu -30 282 156 1740 165 46 7 chr15 21290411 21290696 -64405058 - AluJo SINE Alu -16 296 1 28 29 0 0 chr15 21290699 21290734 -64405020 + AT_rich Low_complexity Low_complexity 1 35 0 2311 112 0 0 chr15 21290970 21291274 -64404480 - AluSq SINE Alu -9 304 1 1034 168 0 0 chr15 21291481 21291636 -64404118 - AluJ SINE Alu -157 155 1 2412 80 3 0 chr15 21292307 21292606 -64403148 - AluSp SINE Alu -13 300 1 27 0 0 0 chr15 21292691 21292718 -64403036 + AT_rich Low_complexity Low_complexity 1 27 0 211 274 0 16 chr15 21293790 21293852 -64401902 + L2 LINE L2 3173 3233 -80 322 130 0 0 chr15 21294681 21294727 -64401027 - Alu SINE Alu -8 292 247 2325 105 0 10 chr15 21294752 21295066 -64400688 - AluSx SINE Alu -1 311 1 2077 108 47 3 chr15 21295263 21295559 -64400195 + AluSx SINE Alu 1 309 -3 334 181 128 64 chr15 21295599 21295693 -64400061 + MIR3 SINE MIR 97 196 -12 226 143 54 0 chr15 21296172 21296228 -64399526 + (TA)n Simple_repeat Simple_repeat 2 60 0 412 123 59 6 chr15 21296251 21296421 -64399333 + (TA)n Simple_repeat Simple_repeat 2 180 0 1782 147 0 33 chr15 21296421 21296720 -64399034 - AluJb SINE Alu -23 289 1 900 147 8 0 chr15 21296762 21296891 -64398863 - FLAM_C SINE Alu -1 132 3 2039 119 51 0 chr15 21296901 21297194 -64398560 - AluSg SINE Alu -2 308 1 1846 86 67 11 chr15 21297842 21298132 -64397622 + AluY SINE Alu 1 305 0 2405 60 0 23 chr15 21298141 21298440 -64397314 + AluY SINE Alu 1 292 -19 2185 98 3 16 chr15 21298451 21298768 -64396986 + AluSq SINE Alu 1 313 0 2309 79 0 30 chr15 21298773 21299078 -64396676 + AluSg SINE Alu 2 297 -13 2192 50 36 11 chr15 21299302 21299581 -64396173 + AluY SINE Alu 1 286 -25 1803 155 7 29 chr15 21299760 21300069 -64395685 + AluJb SINE Alu 1 302 -10 2142 140 0 0 chr15 21300159 21300467 -64395287 - AluJb SINE Alu -4 308 1 2005 125 38 0 chr15 21300706 21300994 -64394760 + AluSg SINE Alu 2 300 -10 1490 165 4 4 chr15 21301074 21301344 -64394410 + AluJb SINE Alu 45 314 0 304 192 283 8 chr15 21301649 21301769 -64393985 + L1ME4a LINE L1 5969 6121 0 2241 112 0 0 chr15 21301866 21302162 -64393592 + AluSx SINE Alu 1 296 -16 2155 98 0 76 chr15 21302953 21303281 -64392473 - AluSq SINE Alu -10 303 1 25 0 0 0 chr15 21303574 21303599 -64392155 + AT_rich Low_complexity Low_complexity 1 25 0 2364 92 3 0 chr15 21305027 21305319 -64390435 - AluSx SINE Alu -19 293 1 689 218 75 32 chr15 21305365 21305553 -64390201 - L2 LINE L2 -5 3308 3113 2210 95 7 0 chr15 21305559 21305844 -64389910 + AluSg SINE Alu 1 287 -23 222 293 122 67 chr15 21305914 21306078 -64389676 - L2 LINE L2 -433 2881 2709 2408 59 0 7 chr15 21306222 21306510 -64389244 + AluSg SINE Alu 4 289 -21 2018 135 60 30 chr15 21306533 21306897 -64388857 - THE1C LTR MaLR 0 375 1 2257 56 19 0 chr15 21307057 21307356 -64388398 - AluSc SINE Alu 0 308 5 272 310 112 73 chr15 21307390 21307693 -64388061 - MLT1K LTR MaLR -22 566 252 1696 184 3 30 chr15 21307694 21307993 -64387761 + AluJb SINE Alu 1 291 -21 449 319 144 24 chr15 21308012 21308388 -64387366 + L1MEc LINE L1 35 455 -5941 2137 101 13 13 chr15 21308542 21308840 -64386914 + AluSx SINE Alu 1 298 -14 897 222 90 72 chr15 21309096 21309288 -64386466 + L1MEc LINE L1 666 853 -5422 2632 58 0 0 chr15 21309288 21309596 -64386158 - AluY SINE Alu -3 308 1 1833 140 7 18 chr15 21309598 21309883 -64385871 - AluSx SINE Alu -30 282 1 897 222 90 72 chr15 21309883 21310137 -64385617 + L1MEc LINE L1 853 1165 -5110 714 278 70 41 chr15 21310260 21310461 -64385293 - L2 LINE L2 -7 3306 3112 2156 79 18 7 chr15 21310461 21310762 -64384992 + AluSg SINE Alu 1 304 0 2157 114 7 0 chr15 21310764 21311072 -64384682 + AluSx SINE Alu 1 310 -2 714 278 70 41 chr15 21311072 21311136 -64384618 - L2 LINE L2 -201 3112 3029 382 127 273 67 chr15 21311168 21311229 -64384525 - Charlie5 DNA MER1_type -1 2584 2537 2516 54 0 3 chr15 21311229 21311526 -64384228 - AluY SINE Alu -15 296 1 382 127 273 67 chr15 21311526 21311614 -64384140 - Charlie5 DNA MER1_type -48 2537 2404 2036 106 32 0 chr15 21311614 21311898 -64383856 - AluSg SINE Alu -17 293 1 246 139 0 0 chr15 21311900 21311936 -64383818 + Alu SINE Alu 210 245 -58 1346 140 0 35 chr15 21311936 21312164 -64383590 + AluSg/x SINE Alu 83 302 -8 678 257 250 0 chr15 21312164 21312468 -64383286 - L2 LINE L2 -625 2689 2310 2334 92 0 3 chr15 21312701 21313004 -64382750 - AluSg SINE Alu -8 302 1 2184 123 3 0 chr15 21313008 21313309 -64382445 - AluSx SINE Alu -10 302 1 893 148 0 63 chr15 21313390 21313532 -64382222 + FLAM_A SINE Alu 1 133 0 601 168 35 18 chr15 21314016 21314129 -64381625 - FLAM_C SINE Alu -15 128 14 272 217 63 137 chr15 21314195 21314370 -64381384 + MIR SINE MIR 50 211 -51 800 184 7 0 chr15 21314496 21314637 -64381117 + FRAM SINE Alu 26 167 -9 704 258 61 0 chr15 21314645 21314808 -64380946 + FRAM SINE Alu 1 173 -3 247 308 118 86 chr15 21315131 21315448 -64380306 + L2 LINE L2 2824 3157 -115 2417 45 14 3 chr15 21315448 21315740 -64380014 + AluSg SINE Alu 1 295 -15 247 308 118 86 chr15 21315740 21315805 -64379949 + L2 LINE L2 3157 3218 -54 2262 89 3 3 chr15 21318728 21319020 -64376734 + AluSg SINE Alu 1 292 -18 1376 180 86 7 chr15 21319406 21319684 -64376070 - AluJo SINE Alu -7 305 6 2287 113 0 0 chr15 21319963 21320264 -64375490 - AluSp SINE Alu -12 301 1 922 118 0 29 chr15 21320267 21320403 -64375351 - AluJo/FLAM SINE Alu -169 133 2 2016 94 7 24 chr15 21320835 21321166 -64374588 - AluSq SINE Alu 0 326 1 2141 102 0 7 chr15 21321443 21321759 -64373995 - AluSg SINE Alu 0 314 1 2154 107 0 7 chr15 21321770 21322061 -64373693 - AluSx SINE Alu -23 289 1 1877 138 3 49 chr15 21322173 21322499 -64373255 + AluJb SINE Alu 1 311 -1 236 152 0 0 chr15 21322530 21322563 -64373191 - Alu SINE Alu -275 33 1 258 105 0 0 chr15 21322589 21322627 -64373127 + (CA)n Simple_repeat Simple_repeat 2 39 0 1284 114 0 0 chr15 21322627 21322802 -64372952 - AluSg/x SINE Alu -17 295 121 476 62 0 0 chr15 21322806 21322870 -64372884 - Alu SINE Alu -8 303 240 1801 93 0 17 chr15 21322870 21323107 -64372647 + AluSg SINE Alu 62 294 -16 237 33 0 0 chr15 21323211 21323241 -64372513 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2287 105 0 0 chr15 21323259 21323553 -64372201 + AluSc SINE Alu 1 294 -15 1584 181 7 28 chr15 21323553 21323839 -64371915 - AluJb SINE Alu -31 281 1 27 49 0 0 chr15 21323971 21324012 -64371742 + AT_rich Low_complexity Low_complexity 1 41 0 2258 106 10 0 chr15 21324119 21324420 -64371334 + AluSg SINE Alu 1 304 -6 2095 115 7 0 chr15 21324433 21324729 -64371025 + AluSx SINE Alu 7 304 -8 2362 91 0 0 chr15 21324748 21325046 -64370708 - AluSx SINE Alu -14 298 1 275 204 0 0 chr15 21325392 21325446 -64370308 - L3 LINE CR1 -1 1576 1523 286 386 8 8 chr15 21325654 21325781 -64369973 - MIR3 SINE MIR -53 155 29 2379 89 24 54 chr15 21325995 21326367 -64369387 - MER46B DNA MER2_type 0 236 1 2573 60 0 0 chr15 21327122 21327421 -64368333 + AluY SINE Alu 1 299 -12 371 268 60 127 chr15 21327589 21327903 -64367851 - L2 LINE L2 -775 2539 2247 231 36 0 0 chr15 21328261 21328289 -64367465 + (TTA)n Simple_repeat Simple_repeat 2 29 0 2078 93 3 43 chr15 21328291 21328593 -64367161 - AluSg SINE Alu -15 295 6 579 178 36 23 chr15 21328618 21328808 -64366946 - MER46A DNA MER2_type 0 236 1 24 0 0 0 chr15 21328918 21328942 -64366812 + AT_rich Low_complexity Low_complexity 1 24 0 1543 256 94 27 chr15 21328999 21329323 -64366431 - L1MCc LINE L1 -2461 4480 4179 2309 112 0 0 chr15 21329323 21329635 -64366119 - AluSx SINE Alu 0 312 1 1543 256 94 27 chr15 21329635 21330948 -64364806 - L1MCc LINE L1 -2762 4179 25 2385 78 14 0 chr15 21331308 21331603 -64364151 + AluSx SINE Alu 1 299 -13 1832 166 0 3 chr15 21331833 21332128 -64363626 + AluJb SINE Alu 1 294 -18 2932 192 50 29 chr15 21332225 21333052 -64362702 - L1MB3 LINE L1 -39 6144 5336 1266 202 61 22 chr15 21333052 21333329 -64362425 - AluJo SINE Alu -24 288 1 2932 192 50 29 chr15 21333329 21333439 -64362315 - L1MB3 LINE L1 -847 5336 5230 384 71 0 0 chr15 21333439 21333495 -64362259 + (CA)n Simple_repeat Simple_repeat 1 56 0 1896 166 0 3 chr15 21333495 21333785 -64361969 - AluSx SINE Alu -23 289 1 2932 192 50 29 chr15 21333785 21333918 -64361836 - L1MB3 LINE L1 -952 5231 4912 2431 49 26 16 chr15 21333976 21334283 -64361471 - AluY SINE Alu -1 310 1 1942 151 0 20 chr15 21334324 21334629 -64361125 - AluJb SINE Alu -13 299 1 2190 115 0 3 chr15 21334772 21335076 -64360678 - AluSg SINE Alu -7 303 1 2128 104 31 0 chr15 21335076 21335363 -64360391 - AluSg SINE Alu -14 296 1 2047 126 0 7 chr15 21335485 21335796 -64359958 + AluSx SINE Alu 1 285 -27 1863 99 4 0 chr15 21335894 21336136 -64359618 - AluSg SINE Alu -12 298 56 311 229 86 19 chr15 21336277 21336382 -64359372 + MIR SINE MIR 125 236 -26 1784 116 0 36 chr15 21338493 21338769 -64356985 - AluSx SINE Alu -46 266 1 2034 136 7 3 chr15 21338846 21339141 -64356613 + AluSx SINE Alu 1 296 -16 437 262 184 44 chr15 21339397 21339728 -64356026 + L1ME4a LINE L1 5471 5754 -367 2218 114 3 7 chr15 21339728 21340036 -64355718 - AluSx SINE Alu -5 307 1 437 262 184 44 chr15 21340036 21340232 -64355522 + L1ME4a LINE L1 5754 5921 -200 1729 152 6 35 chr15 21340232 21340548 -64355206 - AluJo SINE Alu -5 307 1 437 262 184 44 chr15 21340548 21340588 -64355166 + L1ME4a LINE L1 5921 6119 -2 639 244 83 23 chr15 21340728 21340945 -64354809 - L1M4b LINE L1 -5423 1436 1207 22 35 0 0 chr15 21340945 21340974 -64354780 + AT_rich Low_complexity Low_complexity 1 29 0 348 280 113 34 chr15 21341101 21341340 -64354414 + L1ME4a LINE L1 5617 5874 -247 1346 244 87 38 chr15 21341354 21342193 -64353561 - L1ME2 LINE L1 -172 5992 5122 * 1428 207 30 19 chr15 21342187 21342554 -64353200 - L1ME2 LINE L1 -1898 4248 3878 14206 42 7 0 chr15 21342568 21344978 -64350776 - L1PA5 LINE L1 -5 6149 3734 2165 118 0 0 chr15 21345081 21345378 -64350376 - AluSx SINE Alu -15 297 1 2084 117 28 7 chr15 21345387 21345677 -64350077 - AluSx SINE Alu -16 296 1 866 134 17 0 chr15 21345700 21345819 -64349935 + FLAM_C SINE Alu 2 122 -11 21 0 0 0 chr15 21346597 21346618 -64349136 + AT_rich Low_complexity Low_complexity 1 21 0 1689 192 7 3 chr15 21346624 21346916 -64348838 + AluJb SINE Alu 1 293 -19 1624 178 0 14 chr15 21348053 21348328 -64347426 + AluJo SINE Alu 11 281 -31 2562 29 0 35 chr15 21348328 21348637 -64347117 - AluY SINE Alu -12 299 1 5239 64 8 7 chr15 21348637 21349354 -64346400 - L1P LINE L1 -2402 3744 3027 2173 132 7 0 chr15 21349354 21349664 -64346090 - AluJb SINE Alu 0 312 1 2364 125 115 14 chr15 21349665 21350081 -64345673 - Tigger1 DNA MER2_type -1353 1065 608 1993 121 0 7 chr15 21350119 21350401 -64345353 - AluSx SINE Alu -32 280 1 290 350 25 45 chr15 21350996 21351153 -64344601 + L2 LINE L2 3158 3311 -2 27 49 0 0 chr15 21351428 21351469 -64344285 + AT_rich Low_complexity Low_complexity 1 41 0 2361 52 7 3 chr15 21351733 21352022 -64343732 + AluY SINE Alu 1 290 -21 198 294 69 29 chr15 21352392 21352494 -64343260 + MIR SINE MIR 19 124 -84 2325 92 3 0 chr15 21352589 21352895 -64342859 - AluSc SINE Alu -2 307 1 202 93 0 70 chr15 21353165 21353208 -64342546 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 217 313 188 0 chr15 21353349 21353461 -64342293 - L3 LINE CR1 -80 1497 1365 1166 160 11 5 chr15 21353697 21353884 -64341870 - Tigger2a DNA MER2_type -1 443 256 1353 176 0 98 chr15 21353886 21354182 -64341572 - AluJo SINE Alu -22 290 24 1475 114 84 4 chr15 21354192 21354429 -64341325 - Tigger2a DNA MER2_type -176 258 3 1179 205 64 8 chr15 21354467 21354716 -64341038 - AluJb SINE Alu -49 263 1 1948 189 9 46 chr15 21354820 21355170 -64340584 - MER1B DNA MER1_type 0 337 1 1958 146 13 0 chr15 21355189 21355490 -64340264 - AluSx SINE Alu -7 305 1 180 0 0 0 chr15 21355627 21355647 -64340107 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 2053 117 0 4 chr15 21355647 21355928 -64339826 - AluSx SINE Alu -32 280 1 357 348 68 39 chr15 21355933 21356243 -64339511 - L3 LINE CR1 -1004 573 255 198 143 0 0 chr15 21356417 21356452 -64339302 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1195 123 0 0 chr15 21356495 21356658 -64339096 - AluSp SINE Alu -12 301 139 915 235 83 13 chr15 21356677 21356907 -64338847 - MIR SINE MIR -15 247 2 930 180 53 121 chr15 21356981 21357210 -64338544 - MLT1B LTR MaLR -65 325 125 1949 114 18 7 chr15 21357210 21357490 -64338264 - AluSx SINE Alu -29 283 1 930 180 53 121 chr15 21357490 21357599 -64338155 - MLT1B LTR MaLR -265 125 10 266 288 96 14 chr15 21357971 21358117 -64337637 + MER112 DNA MER1_type 99 256 -4 1704 104 4 4 chr15 21358197 21358427 -64337327 - AluSx SINE Alu -10 300 71 2177 105 7 7 chr15 21358427 21358721 -64337033 - AluSx SINE Alu -16 296 1 527 145 40 0 chr15 21358722 21358798 -64336956 - AluSx SINE Alu -233 80 2 1713 164 58 60 chr15 21358975 21359147 -64336607 - MER7A DNA MER2_type -2693 345 174 2153 57 43 29 chr15 21359147 21359447 -64336307 + AluY SINE Alu 1 304 0 1713 164 58 60 chr15 21359447 21359620 -64336134 - MER7A DNA MER2_type -2864 174 2 433 95 48 0 chr15 21359648 21359711 -64336043 + L1MC4a LINE L1 6672 6737 -1071 1514 246 175 33 chr15 21359718 21360052 -64335702 - L1MEc LINE L1 -1908 4307 4022 2289 114 0 3 chr15 21360052 21360360 -64335394 - AluSx SINE Alu -5 307 1 1514 246 175 33 chr15 21360360 21361061 -64334693 - L1MEc LINE L1 -2193 4022 3125 659 226 122 38 chr15 21361061 21361206 -64334548 - MER58 DNA MER1_type 0 2420 2289 2678 194 61 8 chr15 21361206 21361728 -64334026 + MER44D DNA MER2_type 1 605 0 659 226 122 38 chr15 21361728 21361882 -64333872 - MER58 DNA MER1_type -131 2289 10 707 194 225 108 chr15 21361893 21362253 -64333501 - L1MEc LINE L1 -3085 3130 2813 294 85 0 0 chr15 21362253 21362300 -64333454 - MER41A LTR ERV1 -86 468 422 2393 59 7 13 chr15 21362301 21362605 -64333149 + AluY SINE Alu 1 302 -9 707 194 225 108 chr15 21362605 21362926 -64332828 - L1MEc LINE L1 -3401 2814 2316 2100 137 0 0 chr15 21362933 21363232 -64332522 - AluSx SINE Alu -13 299 1 451 236 39 44 chr15 21363235 21363417 -64332337 - L1MEc LINE L1 -4113 2283 2103 513 213 242 42 chr15 21363538 21363778 -64331976 - L1ME1 LINE L1 -190 5976 5689 388 94 0 62 chr15 21363830 21363894 -64331860 - L1MB7 LINE L1 -9 6175 6116 699 217 160 28 chr15 21363916 21364128 -64331626 - L1MA10 LINE L1 -29 6305 6066 3355 145 73 122 chr15 21364136 21365040 -64330714 - L1MB8 LINE L1 -42 6136 5189 1536 143 4 66 chr15 21365040 21365162 -64330592 - AluJb SINE Alu -69 243 144 1754 159 21 3 chr15 21365162 21365445 -64330309 - AluSx SINE Alu -24 288 1 1536 143 4 66 chr15 21365445 21365581 -64330173 - AluJb SINE Alu -168 144 1 3355 145 73 122 chr15 21365581 21365784 -64329970 - L1MB8 LINE L1 -989 5189 5053 2492 64 0 0 chr15 21365784 21366079 -64329675 - AluY SINE Alu -16 295 1 3355 145 73 122 chr15 21366079 21366232 -64329522 - L1MB8 LINE L1 -1125 5053 4894 473 224 133 6 chr15 21366230 21366395 -64329359 - L1ME1 LINE L1 -559 5603 5418 * 1092 191 44 0 chr15 21366400 21366604 -64329150 - AluJb SINE Alu -91 221 9 3506 230 106 50 chr15 21366605 21366677 -64329077 - Charlie1 DNA MER1_type -1102 1659 1592 1784 124 6 81 chr15 21366677 21366999 -64328755 + AluSx SINE Alu 1 298 -14 3506 230 106 50 chr15 21366999 21367058 -64328696 - Charlie1 DNA MER1_type -1169 1592 1538 2171 106 35 0 chr15 21367058 21367342 -64328412 + AluSx SINE Alu 1 294 -18 3506 230 106 50 chr15 21367342 21367465 -64328289 - Charlie1 DNA MER1_type -1223 1538 1423 194 0 39 0 chr15 21367465 21367491 -64328263 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 3506 230 106 50 chr15 21367491 21367841 -64327913 - Charlie1 DNA MER1_type -1338 1423 1094 2447 84 0 0 chr15 21367841 21368138 -64327616 + AluSx SINE Alu 1 297 -15 3506 230 106 50 chr15 21368138 21368555 -64327199 - Charlie1 DNA MER1_type -1667 1094 701 2296 65 10 7 chr15 21368555 21368849 -64326905 - AluY SINE Alu -16 295 1 3506 230 106 50 chr15 21368849 21368999 -64326755 - Charlie1 DNA MER1_type -2060 701 561 1333 196 134 0 chr15 21368999 21369305 -64326449 + MER7A DNA MER2_type 1 345 -1 3506 230 106 50 chr15 21369305 21369416 -64326338 - Charlie1 DNA MER1_type -2200 561 301 1642 189 0 17 chr15 21369425 21369721 -64326033 + AluJo SINE Alu 1 291 -21 1734 144 20 37 chr15 21369734 21370033 -64325721 + AluJo SINE Alu 1 294 -18 2380 84 0 3 chr15 21370039 21370335 -64325419 + AluSp SINE Alu 2 296 -17 1867 147 6 28 chr15 21370648 21370967 -64324787 + AluSq SINE Alu 1 312 -1 227 233 33 17 chr15 21371013 21371073 -64324681 - L1M4c LINE L1 -4731 1653 1593 1657 108 104 21 chr15 21371187 21371466 -64324288 + AluSx SINE Alu 5 306 -6 180 97 0 0 chr15 21371541 21371572 -64324182 + (A)n Simple_repeat Simple_repeat 1 31 0 676 256 0 0 chr15 21371587 21371716 -64324038 + FLAM_A SINE Alu 1 129 -13 1724 166 17 7 chr15 21371881 21372170 -64323584 - AluJo SINE Alu 0 312 21 1538 176 16 0 chr15 21373078 21373334 -64322420 + AluJo SINE Alu 47 306 -6 846 143 0 0 chr15 21373535 21373654 -64322100 + FLAM_C SINE Alu 1 119 -24 2316 107 3 0 chr15 21374054 21374354 -64321400 - AluSp SINE Alu -12 301 1 21 0 0 0 chr15 21374354 21374375 -64321379 + AT_rich Low_complexity Low_complexity 1 21 0 869 146 89 13 chr15 21374641 21374799 -64320955 - AluJo SINE Alu -25 287 118 2303 100 0 13 chr15 21375460 21375771 -64319983 + AluSg SINE Alu 1 307 -3 1463 110 0 0 chr15 21375842 21376033 -64319721 + AluSq SINE Alu 106 296 -17 2020 136 0 17 chr15 21376934 21377236 -64318518 + AluSx SINE Alu 1 297 -15 1179 199 38 0 chr15 21377528 21377739 -64318015 + MER20 DNA MER1_type 1 219 0 1895 147 57 45 chr15 21377840 21378173 -64317581 - MER1B DNA MER1_type 0 337 1 2043 123 3 19 chr15 21379240 21379548 -64316206 - AluSq SINE Alu -9 304 2 1414 187 9 57 chr15 21379653 21379968 -64315786 + AluJo SINE Alu 1 300 -12 343 309 0 0 chr15 21380036 21380120 -64315634 - L2 LINE L2 -289 2983 2900 383 141 26 39 chr15 21380278 21380315 -64315439 - MER41A LTR ERV1 -87 467 431 2166 114 26 13 chr15 21380315 21380621 -64315133 + AluSg SINE Alu 1 310 0 383 141 26 39 chr15 21380621 21380661 -64315093 - MER41A LTR ERV1 -123 431 391 269 320 262 6 chr15 21380661 21381008 -64314746 - L2 LINE L2 -577 2737 2302 2202 79 3 27 chr15 21381011 21381330 -64314424 + AluSp SINE Alu 1 312 0 256 309 0 24 chr15 21381547 21381673 -64314081 + CT-rich Low_complexity Low_complexity 4 126 0 289 355 116 47 chr15 21381689 21382542 -64313212 - L2 LINE L2 -2104 1210 299 1897 149 24 17 chr15 21382617 21382912 -64312842 - AluJb SINE Alu -15 297 1 21 36 0 0 chr15 21382945 21382973 -64312781 + AT_rich Low_complexity Low_complexity 1 28 0 1495 189 26 23 chr15 21384247 21384360 -64311394 + AluJo SINE Alu 1 112 -200 1919 131 0 24 chr15 21384360 21384650 -64311104 - AluSx SINE Alu -29 283 1 1495 189 26 23 chr15 21384650 21384842 -64310912 + AluJo SINE Alu 112 307 -5 546 151 12 0 chr15 21384936 21385022 -64310732 + Tigger5 DNA MER2_type 2237 2323 0 183 255 196 59 chr15 21385837 21385990 -64309764 + MIR SINE MIR 79 252 -10 1852 164 3 19 chr15 21385993 21386303 -64309451 + AluJb SINE Alu 1 305 -7 1251 166 100 30 chr15 21386819 21387090 -64308664 + AluJo SINE Alu 4 293 -19 2055 122 0 19 chr15 21387109 21387421 -64308333 + AluSx SINE Alu 1 306 -6 2198 114 7 0 chr15 21387452 21387751 -64308003 - AluSp SINE Alu -12 301 1 1703 118 118 0 chr15 21387782 21388045 -64307709 + AluSg1 SINE Alu 1 294 -15 2006 138 7 3 chr15 21388135 21388433 -64307321 + AluSx SINE Alu 3 301 -11 189 200 25 0 chr15 21388452 21388492 -64307262 - L2 LINE L2 -10 3262 3222 1296 180 153 0 chr15 21389070 21389331 -64306423 + AluJb SINE Alu 1 301 -11 2393 67 0 17 chr15 21389851 21390151 -64305603 - AluY SINE Alu -16 295 1 1847 176 0 7 chr15 21390194 21390489 -64305265 + AluSx SINE Alu 1 293 -19 1504 161 77 18 chr15 21390806 21391091 -64304663 + AluJo SINE Alu 1 302 -10 1781 114 4 0 chr15 21391099 21391335 -64304419 + AluSq SINE Alu 1 237 -76 608 188 61 117 chr15 21391551 21391610 -64304144 - MER5A DNA MER1_type -3 186 125 2187 89 41 3 chr15 21391610 21391902 -64303852 + AluSq SINE Alu 2 304 -9 608 188 61 117 chr15 21391902 21392039 -64303715 - MER5A DNA MER1_type -64 125 1 331 177 32 0 chr15 21394633 21394695 -64301059 - L1MB5 LINE L1 -8 6166 6103 23 54 0 0 chr15 21394899 21394936 -64300818 + AT_rich Low_complexity Low_complexity 1 37 0 938 245 77 0 chr15 21394944 21395152 -64300602 - MER58A DNA MER1_type 0 224 1 1948 189 9 46 chr15 21395690 21396040 -64299714 - MER1B DNA MER1_type 0 337 1 2209 122 7 0 chr15 21396058 21396362 -64299392 - AluSx SINE Alu -6 306 1 202 93 0 70 chr15 21396632 21396675 -64299079 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 217 313 188 0 chr15 21396816 21396928 -64298826 - L3 LINE CR1 -80 1497 1365 1166 160 11 5 chr15 21397164 21397351 -64298403 - Tigger2a DNA MER2_type -1 443 256 1353 176 0 98 chr15 21397353 21397649 -64298105 - AluJo SINE Alu -22 290 24 1475 114 84 4 chr15 21397659 21397896 -64297858 - Tigger2a DNA MER2_type -176 258 3 1168 206 65 8 chr15 21397934 21398181 -64297573 - AluJb SINE Alu -49 263 3 272 288 0 98 chr15 21398290 21398443 -64297311 - MER1B DNA MER1_type -4 335 198 2143 117 0 7 chr15 21399888 21400196 -64295558 + AluSx SINE Alu 3 308 -4 1148 140 34 10 chr15 21400412 21400619 -64295135 + AluJo SINE Alu 1 212 -100 1589 176 47 3 chr15 21400970 21401266 -64294488 + AluJo SINE Alu 1 309 -3 2218 112 3 10 chr15 21401272 21401586 -64294168 + AluSx SINE Alu 1 312 0 2195 122 0 22 chr15 21401846 21402157 -64293597 - AluSx SINE Alu -8 304 1 1755 169 17 10 chr15 21402233 21402535 -64293219 - AluJb SINE Alu -8 304 1 2447 58 0 3 chr15 21402596 21402887 -64292867 - AluY SINE Alu -21 290 1 2183 110 3 19 chr15 21402887 21403204 -64292550 - AluSx SINE Alu 0 312 1 773 213 6 30 chr15 21403653 21403822 -64291932 - MIR SINE MIR 0 262 98 2011 134 0 41 chr15 21403896 21404216 -64291538 - AluJb SINE Alu -5 307 1 878 124 0 0 chr15 21404462 21404591 -64291163 + AluSg1 SINE Alu 2 130 -179 1719 138 15 8 chr15 21404778 21405046 -64290708 + AluSg1 SINE Alu 28 297 -12 2100 120 0 22 chr15 21405300 21405617 -64290137 - AluSx SINE Alu -2 310 1 186 40 0 0 chr15 21405766 21405775 -64289979 + (TA)n Simple_repeat Simple_repeat 1 9 -16 1786 136 79 0 chr15 21405775 21406040 -64289714 + AluSx SINE Alu 1 286 -26 186 40 0 0 chr15 21406040 21406055 -64289699 + (TA)n Simple_repeat Simple_repeat 8 25 0 2097 106 3 40 chr15 21406104 21406407 -64289347 - AluSx SINE Alu -19 293 2 21 36 0 0 chr15 21406515 21406543 -64289211 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr15 21406602 21406641 -64289113 + AT_rich Low_complexity Low_complexity 1 39 0 679 118 41 178 chr15 21407642 21407707 -64288047 + MER46A DNA MER2_type 1 73 -163 1884 163 10 0 chr15 21407707 21408014 -64287740 + AluSx SINE Alu 3 312 0 1578 177 26 46 chr15 21408024 21408329 -64287425 + AluJb SINE Alu 1 299 -13 679 118 41 178 chr15 21408329 21408421 -64287333 + MER46A DNA MER2_type 83 146 -90 854 147 147 6 chr15 21408928 21409091 -64286663 + AluSx SINE Alu 2 187 -125 948 174 32 18 chr15 21409193 21409412 -64286342 + L1M4 LINE L1 3464 3685 -2461 24 0 0 0 chr15 21409470 21409494 -64286260 + AT_rich Low_complexity Low_complexity 1 24 0 579 178 36 23 chr15 21409604 21409794 -64285960 + MER46A DNA MER2_type 1 236 0 2052 99 3 43 chr15 21409819 21410121 -64285633 + AluSg SINE Alu 6 295 -15 2237 96 0 3 chr15 21410219 21410510 -64285244 + AluSq SINE Alu 1 290 -23 2321 82 0 7 chr15 21412624 21412918 -64282836 + AluSp SINE Alu 1 292 -21 1994 129 58 3 chr15 21412954 21413303 -64282451 - AluSx SINE Alu 0 365 1 210 164 134 30 chr15 21413672 21413739 -64282015 - L2 LINE L2 -61 3252 3179 197 33 33 0 chr15 21413869 21413899 -64281855 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 2153 92 0 0 chr15 21413903 21414176 -64281578 - AluSg SINE Alu -37 273 1 883 188 22 11 chr15 21414268 21414449 -64281305 + AluSg SINE Alu 2 184 -126 725 186 54 0 chr15 21415301 21415430 -64280324 + MER3 DNA MER1_type 6 141 -68 759 112 0 0 chr15 21415496 21415603 -64280151 + AluSg/x SINE Alu 204 310 -2 521 205 8 25 chr15 21416778 21416900 -64278854 + MIR SINE MIR 23 142 -66 22 65 0 0 chr15 21417227 21417258 -64278496 + AT_rich Low_complexity Low_complexity 1 31 0 2368 77 6 16 chr15 21417960 21418273 -64277481 - AluSp SINE Alu 0 313 4 2070 119 10 10 chr15 21418343 21418653 -64277101 - AluSx SINE Alu -2 310 1 626 191 0 19 chr15 21419745 21419850 -64275904 + FLAM_A SINE Alu 18 120 -22 2832 7 0 3 chr15 21419860 21420168 -64275586 + AluY SINE Alu 1 307 -4 180 0 0 0 chr15 21420169 21420189 -64275565 + (ATG)n Simple_repeat Simple_repeat 2 21 0 1785 188 0 0 chr15 21420250 21420538 -64275216 - AluJb SINE Alu -24 288 1 2361 104 0 0 chr15 21420675 21420984 -64274770 + AluSx SINE Alu 1 309 -3 2164 124 0 0 chr15 21421201 21421500 -64274254 - AluSx SINE Alu -12 300 2 1389 181 32 8 chr15 21421501 21421593 -64274161 + AluJo SINE Alu 25 113 -199 486 0 0 0 chr15 21421593 21421647 -64274107 + (CATA)n Simple_repeat Simple_repeat 3 56 0 1389 181 32 8 chr15 21421647 21421802 -64273952 + AluJo SINE Alu 113 278 -34 210 71 0 0 chr15 21421802 21421830 -64273924 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 1834 126 0 15 chr15 21421854 21422124 -64273630 + AluSx SINE Alu 39 304 -8 21 0 0 0 chr15 21424213 21424234 -64271520 + AT_rich Low_complexity Low_complexity 1 21 0 422 254 69 40 chr15 21426419 21426540 -64269214 - MER5B DNA MER1_type 0 178 49 248 70 23 0 chr15 21426540 21426583 -64269171 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 422 254 69 40 chr15 21426583 21426634 -64269120 - MER5B DNA MER1_type -129 49 1 22 80 0 0 chr15 21426897 21426947 -64268807 + AT_rich Low_complexity Low_complexity 1 50 0 273 221 183 29 chr15 21427119 21427223 -64268531 + MIR SINE MIR 72 191 -71 201 250 0 0 chr15 21427670 21427706 -64268048 - MIR SINE MIR -138 70 35 1042 86 0 29 chr15 21428263 21428402 -64267352 - AluSq/x SINE Alu -177 135 1 2354 57 43 7 chr15 21428613 21428913 -64266841 + AluY SINE Alu 1 311 0 1761 121 42 4 chr15 21428919 21429183 -64266571 + AluSq SINE Alu 1 274 -39 2051 118 20 3 chr15 21429462 21429758 -64265996 + AluSx SINE Alu 1 301 -11 237 300 20 40 chr15 21429758 21429858 -64265896 - L2 LINE L2 -32 3281 3184 832 477 45 7 chr15 21430370 21430657 -64265097 - AluJb SINE Alu -4 298 1 194 125 31 0 chr15 21430707 21430739 -64265015 + MIR SINE MIR 116 148 -114 2106 109 3 10 chr15 21430796 21431099 -64264655 - AluSx SINE Alu -10 302 2 2119 111 47 0 chr15 21431289 21431587 -64264167 - AluSx SINE Alu 0 312 1 2072 102 17 10 chr15 21431587 21431882 -64263872 - AluSq SINE Alu -15 298 2 1778 140 43 0 chr15 21431883 21432161 -64263593 - AluSx SINE Alu -9 303 14 2203 135 81 33 chr15 21432288 21432681 -64263073 - MLT2D LTR ERVL 0 414 3 244 320 147 0 chr15 21432799 21432874 -64262880 - L2 LINE L2 -36 3236 3151 1409 130 119 47 chr15 21432914 21433191 -64262563 - AluJo SINE Alu -15 297 1 2257 79 10 10 chr15 21433382 21433687 -64262067 - AluSx SINE Alu -7 305 1 181 185 31 15 chr15 21434741 21434806 -64260948 + C-rich Low_complexity Low_complexity 6 71 0 207 0 0 0 chr15 21435023 21435046 -64260708 + (CGG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr15 21435086 21435109 -64260645 + GC_rich Low_complexity Low_complexity 1 23 0 2409 93 3 0 chr15 21436850 21437152 -64258602 - AluSq SINE Alu -10 303 1 2364 63 25 0 chr15 21437241 21437526 -64258228 - AluY SINE Alu -19 292 1 210 71 0 0 chr15 21437549 21437577 -64258177 + (T)n Simple_repeat Simple_repeat 1 28 0 1657 157 24 41 chr15 21437606 21437762 -64257992 - AluJb SINE Alu -24 288 131 2528 73 0 0 chr15 21437762 21438062 -64257692 - AluSg1 SINE Alu -8 301 2 297 0 0 0 chr15 21438062 21438095 -64257659 + (TA)n Simple_repeat Simple_repeat 2 34 0 1657 157 24 41 chr15 21438095 21438230 -64257524 - AluJb SINE Alu -179 133 1 962 141 0 7 chr15 21438257 21438399 -64257355 - AluJo SINE Alu -171 141 1 867 184 0 0 chr15 21438426 21438567 -64257187 - AluJb SINE Alu -171 141 1 478 130 0 0 chr15 21439264 21439333 -64256421 + FLAM_A SINE Alu 42 110 -32 276 240 40 10 chr15 21439622 21439722 -64256032 - L1MC5 LINE L1 -118 7843 7741 2454 71 7 0 chr15 21441244 21441538 -64254216 - AluSc SINE Alu -13 296 1 276 130 0 0 chr15 21441895 21441941 -64253813 + (T)n Simple_repeat Simple_repeat 1 46 0 1133 79 0 0 chr15 21442042 21442181 -64253573 + AluSp/q SINE Alu 165 303 -10 2259 94 0 0 chr15 21442197 21442473 -64253281 + AluSc SINE Alu 18 293 -16 23 54 0 0 chr15 21442653 21442690 -64253064 + AT_rich Low_complexity Low_complexity 1 37 0 1229 131 131 0 chr15 21443037 21443273 -64252481 - L1MA6 LINE L1 -5 6295 6029 331 230 23 0 chr15 21443345 21443432 -64252322 + MIR SINE MIR 112 200 -62 1885 123 18 7 chr15 21444273 21444558 -64251196 - AluSx SINE Alu -2 310 23 2289 82 4 0 chr15 21444607 21444886 -64250868 - AluSp SINE Alu -20 293 14 2319 91 7 13 chr15 21444894 21445203 -64250551 - AluSg SINE Alu -3 307 1 480 251 79 89 chr15 21445441 21445596 -64250158 + L1M4 LINE L1 4615 4770 -1376 2206 105 24 0 chr15 21445596 21445892 -64249862 + AluSq SINE Alu 1 303 -10 480 251 79 89 chr15 21445892 21446001 -64249753 + L1M4 LINE L1 4770 4879 -1267 1313 191 146 17 chr15 21446001 21446351 -64249403 - MSTD LTR MaLR 0 396 2 480 251 79 89 chr15 21446351 21446568 -64249186 + L1M4 LINE L1 4879 5092 -1054 2069 117 11 0 chr15 21446568 21446887 -64248867 + AluSp SINE Alu 1 322 0 2322 99 10 0 chr15 21446944 21447246 -64248508 + AluSg SINE Alu 1 305 -5 1294 106 62 0 chr15 21447246 21447425 -64248329 + AluSp SINE Alu 109 298 -15 500 244 132 43 chr15 21447472 21447730 -64248024 + L1M4 LINE L1 4040 4320 -1826 992 160 14 80 chr15 21447742 21447955 -64247799 - AluJo SINE Alu -12 300 102 532 309 32 28 chr15 21447962 21448296 -64247458 + L1M4 LINE L1 4330 4665 -1481 267 265 0 0 chr15 21448900 21448968 -64246786 + A-rich Low_complexity Low_complexity 5 72 0 2170 99 26 3 chr15 21449275 21449577 -64246177 - AluSc SINE Alu 0 309 1 2073 147 10 0 chr15 21449702 21450001 -64245753 - AluSx SINE Alu -10 302 1 2079 131 16 3 chr15 21450010 21450316 -64245438 - AluSx SINE Alu -2 310 1 2026 157 0 0 chr15 21450366 21450666 -64245088 + AluJo SINE Alu 7 306 -6 2462 63 3 3 chr15 21450667 21450967 -64244787 + AluY SINE Alu 1 300 -11 679 238 76 24 chr15 21451124 21451393 -64244361 - L1ME LINE L1 -344 5777 5501 208 175 132 114 chr15 21451428 21451542 -64244212 + MIR SINE MIR 39 154 -108 2226 134 0 0 chr15 21451551 21451857 -64243897 + AluSx SINE Alu 1 306 -6 1746 137 13 37 chr15 21453322 21453622 -64242132 - AluJb SINE Alu -19 293 1 1662 163 0 64 chr15 21453805 21453965 -64241789 - AluJo SINE Alu -19 293 161 2144 116 0 16 chr15 21453965 21454268 -64241486 - AluSx SINE Alu -14 298 1 1662 163 0 64 chr15 21454268 21454420 -64241334 - AluJo SINE Alu -151 161 1 1084 182 126 70 chr15 21454425 21454837 -64240917 - Charlie4a DNA MER1_type -73 435 1 481 160 160 0 chr15 21455679 21455779 -64239975 - AluSc SINE Alu -8 301 186 896 94 0 8 chr15 21455783 21455995 -64239759 + AluY SINE Alu 6 291 -20 1590 80 5 5 chr15 21455995 21456196 -64239558 - AluSq SINE Alu -112 201 1 2146 113 3 42 chr15 21456573 21456883 -64238871 + AluSx SINE Alu 1 298 -14 2466 61 10 0 chr15 21456885 21457178 -64238576 + AluY SINE Alu 1 296 -15 859 141 0 0 chr15 21457379 21457507 -64238247 - FLAM_C SINE Alu -5 128 1 317 343 119 0 chr15 21457985 21458128 -64237626 + MIR SINE MIR 33 192 -70 1792 164 10 0 chr15 21460861 21461160 -64234594 - AluSx SINE Alu -10 302 1 563 200 173 27 chr15 21461160 21461310 -64234444 - FAM SINE Alu 0 175 4 2153 114 7 3 chr15 21461516 21461815 -64233939 - AluSx SINE Alu -12 300 1 680 161 16 32 chr15 21462434 21462558 -64233196 - FLAM_A SINE Alu -11 122 1 1913 166 70 0 chr15 21462803 21463116 -64232638 - MER1B DNA MER1_type 0 339 5 1956 135 3 17 chr15 21464229 21464525 -64231229 - AluSx SINE Alu -20 292 1 2319 91 3 3 chr15 21464592 21464890 -64230864 + AluSg SINE Alu 1 298 -12 614 238 220 40 chr15 21465267 21465679 -64230075 + L1ME4a LINE L1 5506 5999 -122 276 188 43 0 chr15 21465712 21465781 -64229973 + L1ME4a LINE L1 6048 6119 -2 2328 85 30 3 chr15 21466412 21466717 -64229037 + AluSp SINE Alu 1 313 0 2280 92 31 0 chr15 21467238 21467530 -64228224 - AluSx SINE Alu -11 301 1 246 235 103 0 chr15 21468902 21468970 -64226784 + L2 LINE L2 3189 3263 -9 2505 78 0 0 chr15 21469010 21469319 -64226435 - AluY SINE Alu -2 309 1 1560 183 14 21 chr15 21469324 21469613 -64226141 - AluJo SINE Alu -21 291 5 329 218 120 30 chr15 21469639 21469772 -64225982 + L1ME4a LINE L1 5789 5933 -188 232 246 35 0 chr15 21469831 21469888 -64225866 + MIR SINE MIR 26 84 -178 2429 78 3 0 chr15 21470500 21470807 -64224947 - AluY SINE Alu -3 308 1 2081 132 0 0 chr15 21471545 21471826 -64223928 - AluSp SINE Alu -32 281 1 2127 138 0 0 chr15 21473016 21473313 -64222441 - AluSx SINE Alu -11 301 5 2582 72 3 0 chr15 21473383 21473690 -64222064 + AluSp SINE Alu 1 308 -5 318 263 56 26 chr15 21473757 21473889 -64221865 + L1MC/D LINE L1 5693 5830 -331 2493 70 0 3 chr15 21473889 21474190 -64221564 + AluY SINE Alu 1 300 -11 2190 116 0 3 chr15 21474356 21474650 -64221104 - AluSx SINE Alu -19 293 1 28 0 0 0 chr15 21474707 21474735 -64221019 + AT_rich Low_complexity Low_complexity 1 28 0 2030 164 0 0 chr15 21474743 21475053 -64220701 + AluJb SINE Alu 1 310 -2 180 0 0 0 chr15 21475067 21475087 -64220667 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 257 221 79 64 chr15 21475129 21475269 -64220485 + L1ME LINE L1 328 469 -5927 2461 52 10 32 chr15 21475543 21475853 -64219901 - AluY SINE Alu -8 303 1 2317 204 103 80 chr15 21476198 21476396 -64219358 + L1ME LINE L1 775 967 -5439 2358 106 0 6 chr15 21476396 21476708 -64219046 + AluSx SINE Alu 1 310 -2 2317 204 103 80 chr15 21476708 21476765 -64218989 + L1ME LINE L1 967 1021 -5385 2224 96 22 29 chr15 21476765 21477078 -64218676 + AluSx SINE Alu 1 311 -1 2317 204 103 80 chr15 21477078 21477294 -64218460 + L1ME LINE L1 1021 1231 -5175 3013 148 40 84 chr15 21477294 21477924 -64217830 + MER7C DNA MER2_type 1 602 0 2317 204 103 80 chr15 21477924 21478019 -64217735 + L1ME LINE L1 1231 1322 -5084 2249 90 0 45 chr15 21478019 21478331 -64217423 + AluSc SINE Alu 1 298 -11 2317 204 103 80 chr15 21478331 21478729 -64217025 + L1ME LINE L1 1322 1739 -4667 2117 140 0 0 chr15 21478729 21479029 -64216725 - AluJb SINE Alu -12 300 1 2317 204 103 80 chr15 21479029 21479115 -64216639 + L1ME LINE L1 1739 1822 -4584 444 54 0 0 chr15 21479135 21479191 -64216563 + Alu SINE Alu 2 57 -261 663 246 80 26 chr15 21479195 21479508 -64216246 + L1ME LINE L1 1995 2324 -4082 1072 235 43 4 chr15 21479511 21479788 -64215966 + L1ME LINE L1 3663 3950 -2456 1985 120 19 19 chr15 21479788 21480097 -64215657 + AluSx SINE Alu 1 309 -3 3164 216 35 34 chr15 21480866 21481027 -64214727 + L1M4 LINE L1 3519 3678 -2468 2091 137 0 0 chr15 21481027 21481320 -64214434 + AluSx SINE Alu 1 293 -19 3164 216 35 34 chr15 21481320 21481958 -64213796 + L1M4 LINE L1 3678 4322 -1824 2034 95 75 14 chr15 21481958 21482253 -64213501 + AluSq SINE Alu 1 313 0 3164 216 35 34 chr15 21482253 21482303 -64213451 + L1M4 LINE L1 4322 4370 -1776 1932 134 7 3 chr15 21483407 21483691 -64212063 - AluJo SINE Alu -27 285 1 2315 67 9 51 chr15 21484070 21484386 -64211368 + AluY SINE Alu 1 303 -8 1538 134 9 0 chr15 21484746 21484969 -64210785 - AluSg/x SINE Alu -9 303 79 2276 95 14 7 chr15 21485126 21485422 -64210332 + AluSx SINE Alu 1 298 -14 755 153 0 29 chr15 21485813 21485950 -64209804 + FLAM_C SINE Alu 1 133 0 1876 157 10 22 chr15 21486170 21486483 -64209271 + AluSx SINE Alu 1 309 -3 22 56 0 0 chr15 21486542 21486578 -64209176 + AT_rich Low_complexity Low_complexity 1 36 0 2074 194 55 18 chr15 21487286 21487739 -64208015 + LTR22B LTR ERVK 23 492 0 2296 101 0 10 chr15 21488562 21488869 -64206885 - AluSg SINE Alu -6 304 1 639 159 22 65 chr15 21489198 21489336 -64206418 - FLAM_C SINE Alu 0 133 2 1317 156 120 36 chr15 21490453 21490593 -64205161 + AluJo SINE Alu 1 128 -184 2285 101 0 10 chr15 21490593 21490899 -64204855 + AluSx SINE Alu 4 306 -6 1317 156 120 36 chr15 21490899 21491034 -64204720 + AluJo SINE Alu 128 299 -13 1919 141 0 3 chr15 21491299 21491603 -64204151 + AluSx SINE Alu 1 303 0 997 161 43 0 chr15 21491604 21491765 -64203989 + AluJo/FRAM SINE Alu 133 300 -12 1713 158 34 14 chr15 21491958 21492250 -64203504 - AluJb SINE Alu -12 300 3 306 228 0 175 chr15 21492416 21492517 -64203237 + MIR SINE MIR 70 131 -131 1924 133 0 51 chr15 21492517 21492832 -64202922 - AluSx SINE Alu -13 299 1 306 228 0 175 chr15 21492832 21492901 -64202853 + MIR SINE MIR 131 210 -52 2443 70 0 6 chr15 21492906 21493218 -64202536 + AluSg SINE Alu 1 310 0 1357 190 6 80 chr15 21493226 21493552 -64202202 + AluJb SINE Alu 1 302 -10 2349 93 7 0 chr15 21493577 21493879 -64201875 - AluSx SINE Alu -8 304 1 2335 99 7 0 chr15 21495865 21496169 -64199585 - AluSp SINE Alu -7 306 1 182 258 0 0 chr15 21496867 21496898 -64198856 - L2 LINE L2 -18 3254 3224 2262 114 0 3 chr15 21498048 21498355 -64197399 - AluSg SINE Alu -4 306 1 1194 74 27 0 chr15 21498619 21498767 -64196987 - L1PA8 LINE L1 -15 6157 6006 21 0 0 0 chr15 21498811 21498832 -64196922 + AT_rich Low_complexity Low_complexity 1 21 0 285 253 137 14 chr15 21498847 21498993 -64196761 - L1ME4a LINE L1 -2 6119 5956 869 199 50 0 chr15 21499038 21499199 -64196555 - FRAM SINE Alu -6 170 2 2276 101 7 0 chr15 21499629 21499926 -64195828 + AluSp SINE Alu 1 299 -14 257 216 20 0 chr15 21499932 21499983 -64195771 + MIR SINE MIR 56 107 -155 1873 160 0 0 chr15 21500018 21500305 -64195449 - AluJb SINE Alu -12 300 14 2009 145 0 23 chr15 21500312 21500622 -64195132 - AluSx SINE Alu -9 303 1 3861 136 20 9 chr15 21500648 21501233 -64194521 - L1 LINE L1 -1665 4481 3887 2298 98 0 13 chr15 21501233 21501539 -64194215 - AluY SINE Alu -9 302 1 3861 136 20 9 chr15 21501539 21501606 -64194148 - L1 LINE L1 -2259 3887 3822 1614 139 27 131 chr15 21501812 21502149 -64193605 - AluJo SINE Alu 0 302 1 1463 170 71 54 chr15 21502398 21502734 -64193020 + MER2 DNA MER2_type 2 343 -1 2399 86 10 19 chr15 21503404 21503718 -64192036 + AluY SINE Alu 1 311 0 256 293 17 0 chr15 21504000 21504058 -64191696 - L2 LINE L2 -7 3265 3207 354 316 128 37 chr15 21504326 21504513 -64191241 - MIR SINE MIR -57 205 2 1956 123 47 0 chr15 21506050 21506326 -64189428 - AluSx SINE Alu -23 289 1 226 265 0 0 chr15 21506430 21506479 -64189275 + Charlie4 DNA MER1_type 2 50 -1911 1449 261 97 21 chr15 21506692 21507168 -64188586 + LTR33A LTR ERVL 4 515 -8 384 292 56 50 chr15 21507469 21507630 -64188124 + MIR3 SINE MIR 9 170 -38 30 27 0 0 chr15 21507667 21507704 -64188050 + AT_rich Low_complexity Low_complexity 1 37 0 2182 61 27 24 chr15 21507893 21508186 -64187568 - AluY SINE Alu -17 294 1 1794 138 10 61 chr15 21508493 21508653 -64187101 - AluJb SINE Alu -16 296 158 2381 104 0 0 chr15 21508653 21508960 -64186794 - AluSx SINE Alu -5 307 1 1794 138 10 61 chr15 21508960 21509111 -64186643 - AluJb SINE Alu -154 158 1 2173 102 17 0 chr15 21509141 21509435 -64186319 - AluSx SINE Alu -13 299 1 225 0 0 0 chr15 21509849 21509874 -64185880 + (A)n Simple_repeat Simple_repeat 1 25 0 918 285 85 38 chr15 21510042 21510567 -64185187 + L1ME4a LINE L1 5270 5828 -293 2238 84 17 13 chr15 21510567 21510866 -64184888 - AluY SINE Alu -11 300 1 918 285 85 38 chr15 21510866 21510940 -64184814 + L1ME4a LINE L1 5828 5897 -224 330 238 25 12 chr15 21510947 21511027 -64184727 + L2 LINE L2 3232 3312 -1 302 163 0 0 chr15 21511068 21511117 -64184637 + L1ME4a LINE L1 5973 6021 -100 30 0 0 0 chr15 21511160 21511190 -64184564 + AT_rich Low_complexity Low_complexity 1 30 0 1561 156 80 8 chr15 21511190 21511453 -64184301 - AluJo SINE Alu -30 282 1 1020 181 12 0 chr15 21512654 21512820 -64182934 + FRAM SINE Alu 1 167 -9 1742 170 14 7 chr15 21512993 21513281 -64182473 - AluJb SINE Alu -22 290 1 768 211 51 11 chr15 21513378 21513553 -64182201 + MIR SINE MIR 62 243 -19 1841 148 35 0 chr15 21514965 21515255 -64180499 - AluJo SINE Alu -12 300 1 601 243 70 5 chr15 21515311 21515496 -64180258 - L1ME3A LINE L1 -222 5948 5752 470 248 15 15 chr15 21515491 21515624 -64180130 + L1M4 LINE L1 3922 4054 -2092 * 349 222 0 0 chr15 21515661 21515742 -64180012 - L1ME3A LINE L1 -2358 5427 5347 460 280 64 6 chr15 21515747 21515904 -64179850 + LTR33 LTR ERVL 1 166 -355 774 285 68 45 chr15 21516051 21516447 -64179307 - L1ME3A LINE L1 -1070 5076 4672 1938 194 46 5 chr15 21516561 21516952 -64178802 - L1P LINE L1 -2006 4140 3734 2216 108 7 0 chr15 21516952 21517248 -64178506 - AluSx SINE Alu -13 299 2 581 279 145 16 chr15 21517270 21517701 -64178053 - L1ME3A LINE L1 -294 5876 5502 423 0 0 0 chr15 21517701 21517748 -64178006 + (TG)n Simple_repeat Simple_repeat 2 48 0 581 279 145 16 chr15 21517748 21518068 -64177686 - L1ME3A LINE L1 -668 5502 5016 802 147 0 0 chr15 21518072 21518188 -64177566 - AluYa5 SINE Alu -62 249 134 2487 61 3 7 chr15 21518307 21518617 -64177137 + AluSc SINE Alu 1 309 0 1357 190 6 80 chr15 21518625 21518951 -64176803 + AluJb SINE Alu 1 302 -10 2349 93 7 0 chr15 21518976 21519278 -64176476 - AluSx SINE Alu -8 304 1 2335 99 7 0 chr15 21521269 21521573 -64174181 - AluSp SINE Alu -7 306 1 182 258 0 0 chr15 21522271 21522302 -64173452 - L2 LINE L2 -18 3254 3224 2262 114 0 3 chr15 21523452 21523759 -64171995 - AluSg SINE Alu -4 306 1 1194 74 27 0 chr15 21524023 21524171 -64171583 - L1PA8 LINE L1 -15 6157 6006 21 0 0 0 chr15 21524215 21524236 -64171518 + AT_rich Low_complexity Low_complexity 1 21 0 285 253 137 14 chr15 21524251 21524397 -64171357 - L1ME4a LINE L1 -2 6119 5956 869 199 50 0 chr15 21524442 21524603 -64171151 - FRAM SINE Alu -6 170 2 2276 101 7 0 chr15 21525033 21525330 -64170424 + AluSp SINE Alu 1 299 -14 257 216 20 0 chr15 21525336 21525387 -64170367 + MIR SINE MIR 56 107 -155 1873 160 0 0 chr15 21525422 21525709 -64170045 - AluJb SINE Alu -12 300 14 2009 145 0 23 chr15 21525716 21526026 -64169728 - AluSx SINE Alu -9 303 1 3861 136 20 9 chr15 21526052 21526637 -64169117 - L1 LINE L1 -1665 4481 3887 2298 98 0 13 chr15 21526637 21526943 -64168811 - AluY SINE Alu -9 302 1 3861 136 20 9 chr15 21526943 21527010 -64168744 - L1 LINE L1 -2259 3887 3822 1614 139 27 131 chr15 21527216 21527553 -64168201 - AluJo SINE Alu 0 302 1 1463 170 71 54 chr15 21527802 21528138 -64167616 + MER2 DNA MER2_type 2 343 -1 2434 76 10 19 chr15 21528808 21529122 -64166632 + AluY SINE Alu 1 311 0 256 293 17 0 chr15 21529404 21529462 -64166292 - L2 LINE L2 -7 3265 3207 354 316 128 37 chr15 21529730 21529917 -64165837 - MIR SINE MIR -57 205 2 1956 123 47 0 chr15 21531454 21531730 -64164024 - AluSx SINE Alu -23 289 1 226 265 0 0 chr15 21531834 21531883 -64163871 + Charlie4 DNA MER1_type 2 50 -1911 1449 261 97 21 chr15 21532096 21532572 -64163182 + LTR33A LTR ERVL 4 515 -8 384 292 56 50 chr15 21532873 21533034 -64162720 + MIR3 SINE MIR 9 170 -38 30 27 0 0 chr15 21533071 21533108 -64162646 + AT_rich Low_complexity Low_complexity 1 37 0 2182 61 27 24 chr15 21533297 21533590 -64162164 - AluY SINE Alu -17 294 1 1794 138 10 61 chr15 21533897 21534057 -64161697 - AluJb SINE Alu -16 296 158 2381 104 0 0 chr15 21534057 21534364 -64161390 - AluSx SINE Alu -5 307 1 1794 138 10 61 chr15 21534364 21534515 -64161239 - AluJb SINE Alu -154 158 1 2173 102 17 0 chr15 21534545 21534839 -64160915 - AluSx SINE Alu -13 299 1 225 0 0 0 chr15 21535253 21535278 -64160476 + (A)n Simple_repeat Simple_repeat 1 25 0 918 285 85 38 chr15 21535446 21535971 -64159783 + L1ME4a LINE L1 5270 5828 -293 2238 84 17 13 chr15 21535971 21536270 -64159484 - AluY SINE Alu -11 300 1 918 285 85 38 chr15 21536270 21536344 -64159410 + L1ME4a LINE L1 5828 5897 -224 330 238 25 12 chr15 21536351 21536431 -64159323 + L2 LINE L2 3232 3312 -1 302 163 0 0 chr15 21536472 21536521 -64159233 + L1ME4a LINE L1 5973 6021 -100 30 0 0 0 chr15 21536564 21536594 -64159160 + AT_rich Low_complexity Low_complexity 1 30 0 1561 156 80 8 chr15 21536594 21536857 -64158897 - AluJo SINE Alu -30 282 1 1020 181 12 0 chr15 21538058 21538224 -64157530 + FRAM SINE Alu 1 167 -9 1742 170 14 7 chr15 21538397 21538685 -64157069 - AluJb SINE Alu -22 290 1 768 211 51 11 chr15 21538782 21538957 -64156797 + MIR SINE MIR 62 243 -19 1841 148 35 0 chr15 21540369 21540659 -64155095 - AluJo SINE Alu -12 300 1 601 243 70 5 chr15 21540715 21540900 -64154854 - L1ME3A LINE L1 -222 5948 5752 470 248 15 15 chr15 21540895 21541028 -64154726 + L1M4 LINE L1 3922 4054 -2092 * 349 222 0 0 chr15 21541065 21541146 -64154608 - L1ME3A LINE L1 -2358 5427 5347 460 280 64 6 chr15 21541151 21541308 -64154446 + LTR33 LTR ERVL 1 166 -355 801 293 65 31 chr15 21541455 21541807 -64153947 - L1ME3A LINE L1 -1070 5076 4713 1909 166 0 0 chr15 21541834 21542136 -64153618 - AluSx SINE Alu -9 303 2 255 217 0 33 chr15 21542596 21542656 -64153098 - L1ME3A LINE L1 -1524 4622 4565 * 615 225 39 93 chr15 21542653 21542780 -64152974 - L1ME3A LINE L1 -2042 4104 3972 2336 65 3 32 chr15 21542780 21543089 -64152665 + AluY SINE Alu 1 300 -11 2280 81 7 10 chr15 21543089 21543385 -64152369 + AluY SINE Alu 1 295 -16 615 225 39 93 chr15 21543385 21543514 -64152240 - L1ME3A LINE L1 -2172 3974 3861 239 277 0 0 chr15 21543708 21543773 -64151981 + MIR SINE MIR 90 154 -108 433 213 0 0 chr15 21543893 21543973 -64151781 + MER116 DNA Mariner 1 80 0 2211 102 24 0 chr15 21544275 21544569 -64151185 - AluSx SINE Alu -11 301 1 22 0 0 0 chr15 21544975 21544997 -64150757 + AT_rich Low_complexity Low_complexity 1 22 0 1528 161 26 59 chr15 21545100 21545256 -64150498 - AluJo SINE Alu -17 295 152 2269 87 28 0 chr15 21545256 21545544 -64150210 - AluSx SINE Alu -16 296 1 1528 161 26 59 chr15 21545544 21545692 -64150062 - AluJo SINE Alu -160 152 1 25 0 0 0 chr15 21545876 21545901 -64149853 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr15 21546500 21546526 -64149228 + AT_rich Low_complexity Low_complexity 1 26 0 2013 132 10 3 chr15 21547506 21547802 -64147952 - AluJb SINE Alu -14 298 1 1902 138 10 22 chr15 21548303 21548614 -64147140 - AluSx SINE Alu -5 307 1 3173 143 28 52 chr15 21548654 21548759 -64146995 + L1MA9 LINE L1 5726 5832 -480 991 143 0 0 chr15 21548759 21548892 -64146862 + FLAM_C SINE Alu 1 133 0 3173 143 28 52 chr15 21548892 21549386 -64146368 + L1MA9 LINE L1 5832 6311 -1 2251 100 7 3 chr15 21549406 21549706 -64146048 + AluSp SINE Alu 1 301 -12 1385 151 82 68 chr15 21549737 21549870 -64145884 - AluJo SINE Alu -16 296 166 2367 103 108 79 chr15 21549870 21550245 -64145509 + MSTA LTR MaLR 1 391 -37 2175 97 0 3 chr15 21550245 21550533 -64145221 - AluSx SINE Alu -25 287 1 2367 103 108 79 chr15 21550533 21550573 -64145181 + MSTA LTR MaLR 391 428 0 1385 151 82 68 chr15 21550573 21550731 -64145023 - AluJo SINE Alu -146 166 1 425 362 64 34 chr15 21551384 21551811 -64143943 - L2 LINE L2 -226 3046 2601 2255 89 3 7 chr15 21552147 21552440 -64143314 - AluSg SINE Alu -16 294 3 586 279 28 11 chr15 21554163 21554342 -64141412 - MIR SINE MIR -14 248 67 2166 83 4 11 chr15 21554342 21554618 -64141136 + AluSq SINE Alu 1 274 -39 236 246 0 82 chr15 21554626 21554687 -64141067 - MIR SINE MIR -184 78 23 2077 134 3 0 chr15 21555133 21555431 -64140323 - AluSg SINE Alu -11 299 1 559 258 81 58 chr15 21555578 21555938 -64139816 + L1ME4a LINE L1 5542 5909 -212 2106 175 44 76 chr15 21555940 21556215 -64139539 - LTR54 LTR ERV1 0 510 228 910 113 0 70 chr15 21556215 21556357 -64139397 - FLAM_C SINE Alu 0 133 2 2120 151 0 0 chr15 21556357 21556662 -64139092 - AluJb SINE Alu -7 305 1 2106 175 44 76 chr15 21556662 21556912 -64138842 - LTR54 LTR ERV1 -280 230 1 1585 168 39 7 chr15 21557071 21557356 -64138398 - AluJo SINE Alu -14 298 5 1787 125 80 7 chr15 21557619 21557908 -64137846 + AluJo SINE Alu 3 312 0 280 320 116 14 chr15 21558313 21558385 -64137369 + MIR3 SINE MIR 41 104 -104 2217 136 0 0 chr15 21558385 21558693 -64137061 - AluSq SINE Alu -5 308 1 280 320 116 14 chr15 21558693 21558767 -64136987 + MIR3 SINE MIR 104 202 -6 1456 183 11 42 chr15 21558854 21559138 -64136616 - AluSx SINE Alu -37 275 1 1794 146 36 11 chr15 21559153 21559434 -64136320 - AluSx SINE Alu -24 288 1 30 45 0 0 chr15 21559440 21559484 -64136270 + AT_rich Low_complexity Low_complexity 1 44 0 1847 166 10 7 chr15 21559491 21559793 -64135961 + AluSg SINE Alu 1 303 -7 348 143 0 0 chr15 21559795 21559844 -64135910 + MER58 DNA MER1_type 2353 2401 -19 1781 113 33 97 chr15 21559851 21560180 -64135574 + AluJo SINE Alu 5 312 0 2134 150 0 0 chr15 21560189 21560495 -64135259 + AluSx SINE Alu 1 306 -6 760 259 30 0 chr15 21560517 21560683 -64135071 - MER5A DNA MER1_type -18 171 1 382 226 36 93 chr15 21560896 21561017 -64134737 + L1MC4 LINE L1 7804 7930 -112 1778 68 0 5 chr15 21561017 21561236 -64134518 + AluY SINE Alu 84 301 -10 1903 119 22 0 chr15 21561241 21561510 -64134244 + AluSx SINE Alu 38 312 0 382 226 36 93 chr15 21561510 21561630 -64134124 + L1MC4 LINE L1 7934 8037 -5 446 193 105 4 chr15 21561635 21561771 -64133983 + L1MEc LINE L1 1007 1129 -5076 1804 157 20 7 chr15 21561863 21562162 -64133592 - AluSx SINE Alu -7 305 3 552 182 10 10 chr15 21562217 21562316 -64133438 + Tigger3b DNA MER2_type 2 100 -1131 1476 132 128 4 chr15 21562317 21562583 -64133171 + Tigger3b DNA MER2_type 275 573 -658 1967 123 10 14 chr15 21562734 21563047 -64132707 + AluSx SINE Alu 1 312 0 293 235 29 0 chr15 21563178 21563246 -64132508 + L1ME3A LINE L1 6011 6080 -90 1999 141 7 0 chr15 21563268 21563559 -64132195 + AluSx SINE Alu 1 293 -19 963 249 142 75 chr15 21563640 21563807 -64131947 + L1MB7 LINE L1 3839 3993 -2153 375 73 0 0 chr15 21563807 21563862 -64131892 + (CA)n Simple_repeat Simple_repeat 2 56 0 963 249 142 75 chr15 21563862 21563976 -64131778 + L1MB7 LINE L1 3993 4098 -2048 1586 197 7 0 chr15 21563976 21564266 -64131488 + AluJb SINE Alu 1 292 -20 963 249 142 75 chr15 21564266 21564483 -64131271 + L1MB7 LINE L1 4098 4299 -1847 2248 113 0 0 chr15 21564483 21564784 -64130970 + AluY SINE Alu 1 301 -10 963 249 142 75 chr15 21564784 21565262 -64130492 + L1MB7 LINE L1 4299 4883 -1263 2075 143 3 0 chr15 21565284 21565585 -64130169 - AluSx SINE Alu -10 302 1 207 0 0 0 chr15 21566138 21566161 -64129593 + (A)n Simple_repeat Simple_repeat 1 23 0 2272 110 7 0 chr15 21566297 21566605 -64129149 + AluSx SINE Alu 2 311 -1 29 28 0 0 chr15 21566620 21566656 -64129098 + AT_rich Low_complexity Low_complexity 1 36 0 1665 195 0 35 chr15 21566790 21567103 -64128651 + AluJo SINE Alu 1 302 -10 420 296 9 9 chr15 21567371 21567486 -64128268 + MIR SINE MIR 43 157 -105 305 212 10 50 chr15 21567521 21567620 -64128134 + L1ME4a LINE L1 5955 6049 -72 4802 148 81 45 chr15 21567642 21567968 -64127786 + L1MB7 LINE L1 4891 5204 -980 9074 168 8 40 chr15 21567968 21568093 -64127661 + L1PA15 LINE L1 3613 3740 -2425 2473 63 0 13 chr15 21568093 21568395 -64127359 + AluY SINE Alu 1 298 -13 9074 168 8 40 chr15 21568395 21570478 -64125276 + L1PA15 LINE L1 3740 5753 -412 1718 82 182 43 chr15 21570478 21570807 -64124947 - THE1C LTR MaLR 0 375 1 9074 168 8 40 chr15 21570807 21571202 -64124552 + L1PA15 LINE L1 5753 6159 -6 4802 148 81 45 chr15 21571202 21572151 -64123603 + L1MB7 LINE L1 5204 6184 0 367 299 33 48 chr15 21572175 21572364 -64123390 + MIR SINE MIR 27 206 -56 1993 142 10 7 chr15 21572443 21572745 -64123009 + AluSx SINE Alu 1 303 -9 1472 157 3 105 chr15 21573415 21573739 -64122015 - AluJo SINE Alu -17 295 5 2154 104 3 10 chr15 21573821 21574120 -64121634 + AluSq SINE Alu 1 297 -16 1302 208 123 4 chr15 21574448 21574708 -64121046 + AluJo SINE Alu 1 291 -11 329 161 0 0 chr15 21574708 21574764 -64120990 + AluJb SINE Alu 126 181 -121 1312 185 6 34 chr15 21574793 21575118 -64120636 + L1M1 LINE L1 2891 3206 -4359 1966 102 0 87 chr15 21575628 21575961 -64119793 - AluSp SINE Alu -8 305 2 402 311 56 6 chr15 21575961 21576122 -64119632 - Charlie8 DNA MER1_type -2248 169 1 23 0 0 0 chr15 21576151 21576174 -64119580 + AT_rich Low_complexity Low_complexity 1 23 0 411 279 108 0 chr15 21577399 21577528 -64118226 - MIR SINE MIR -10 252 110 1967 113 0 8 chr15 21577565 21577830 -64117924 - AluSx SINE Alu -8 304 42 376 337 111 11 chr15 21577965 21578146 -64117608 - L2 LINE L2 -399 2915 2717 500 311 72 14 chr15 21578412 21578621 -64117133 - L2 LINE L2 -605 2709 2489 530 172 11 0 chr15 21578649 21578735 -64117019 - MER44D DNA MER2_type 0 609 523 789 189 0 0 chr15 21578735 21578878 -64116876 + Tigger2 DNA MER2_type 1 143 -2575 1076 156 0 0 chr15 21578879 21579033 -64116721 - AluJb SINE Alu -23 289 136 3216 139 29 89 chr15 21579033 21579142 -64116612 + Tigger2 DNA MER2_type 130 244 -2474 1969 130 10 13 chr15 21579142 21579441 -64116313 + AluSx SINE Alu 1 298 -14 3216 139 29 89 chr15 21579441 21579471 -64116283 + Tigger2 DNA MER2_type 244 274 -2444 2162 97 20 10 chr15 21579471 21579769 -64115985 + AluSq SINE Alu 1 301 -12 3216 139 29 89 chr15 21579769 21580066 -64115688 + Tigger2 DNA MER2_type 274 518 -2200 779 177 8 0 chr15 21580066 21580190 -64115564 + FLAM_A SINE Alu 5 129 -4 3216 139 29 89 chr15 21580190 21580405 -64115349 + Tigger2 DNA MER2_type 518 744 -1974 1597 118 49 0 chr15 21580461 21580707 -64115047 + Tigger2 DNA MER2_type 2461 2718 0 1090 132 107 0 chr15 21580710 21580907 -64114847 - MER44D DNA MER2_type -90 519 32 215 300 62 0 chr15 21580926 21581006 -64114748 - L2 LINE L2 -1694 1620 1536 1362 316 73 13 chr15 21581007 21581636 -64114118 - L2 LINE L2 -1917 1397 731 1114 157 95 19 chr15 21582506 21582768 -64112986 - Charlie5 DNA MER1_type -97 2515 2234 1154 129 12 0 chr15 21582786 21582956 -64112798 + AluSg/x SINE Alu 125 296 -14 529 210 10 0 chr15 21582959 21583059 -64112695 - Charlie5 DNA MER1_type -2511 101 1 2419 81 0 7 chr15 21583377 21583674 -64112080 - AluSg SINE Alu -15 295 1 1290 148 118 53 chr15 21584643 21584704 -64111050 - MER33 DNA MER1_type -2261 324 268 2012 110 7 0 chr15 21584704 21585011 -64110743 + AluSx SINE Alu 11 319 0 1290 148 118 53 chr15 21585011 21585252 -64110502 - MER33 DNA MER1_type -2317 268 1 767 172 210 0 chr15 21585994 21586151 -64109603 + MER3 DNA MER1_type 6 195 -14 1638 140 87 14 chr15 21587304 21587590 -64108164 + AluJb SINE Alu 1 307 -5 518 287 169 33 chr15 21589227 21589499 -64106255 + L2 LINE L2 3003 3311 -2 2035 108 31 3 chr15 21589525 21589813 -64105941 - AluSx SINE Alu -16 296 1 1437 139 48 91 chr15 21589973 21590083 -64105671 + AluJb SINE Alu 16 129 -183 2061 92 20 27 chr15 21590083 21590376 -64105378 - AluSp SINE Alu -22 291 1 1437 139 48 91 chr15 21590376 21590574 -64105180 + AluJb SINE Alu 129 311 -1 605 288 44 40 chr15 21591584 21591834 -64103920 - MIR SINE MIR -10 252 2 262 198 140 89 chr15 21592534 21592576 -64103178 + Charlie7 DNA MER1_type 2444 2482 -130 2229 114 7 0 chr15 21592576 21592874 -64102880 + AluSx SINE Alu 1 300 -12 262 198 140 89 chr15 21592874 21592988 -64102766 + Charlie7 DNA MER1_type 2482 2608 -4 440 196 81 40 chr15 21593003 21593151 -64102603 + MER5A DNA MER1_type 36 189 0 1844 131 32 3 chr15 21595122 21595405 -64100349 - AluJb SINE Alu -19 293 3 2253 115 3 0 chr15 21596123 21596427 -64099327 + AluSx SINE Alu 1 305 -7 2190 104 7 7 chr15 21597677 21597975 -64097779 - AluSx SINE Alu -14 298 1 288 275 13 0 chr15 21598795 21598890 -64096864 - L1P LINE L1 -1165 4981 4886 1581 154 58 79 chr15 21599348 21599492 -64096262 - MER44D DNA MER2_type -1882 609 463 1672 140 45 48 chr15 21599492 21599784 -64095970 - AluJo SINE Alu -21 291 1 1581 154 58 79 chr15 21599784 21599969 -64095785 - MER44D DNA MER2_type -2028 463 17 258 160 0 0 chr15 21600489 21600539 -64095215 + CT-rich Low_complexity Low_complexity 2 51 0 853 149 0 22 chr15 21600816 21600950 -64094804 + FLAM_A SINE Alu 1 131 -2 184 370 0 28 chr15 21601209 21601317 -64094437 - MIR SINE MIR -74 134 30 5162 92 21 7 chr15 21601951 21602703 -64093051 + L1P LINE L1 3822 4584 -1562 1396 97 0 5 chr15 21602709 21602895 -64092859 + AluY SINE Alu 28 212 -99 22 70 0 0 chr15 21603142 21603185 -64092569 + AT_rich Low_complexity Low_complexity 1 43 0 1287 271 36 26 chr15 21603311 21603779 -64091975 + L1MEc LINE L1 491 963 -5600 230 196 0 0 chr15 21603794 21603840 -64091914 + L1MEc LINE L1 942 987 -5576 2981 184 28 3 chr15 21603843 21604409 -64091345 + L1MC3 LINE L1 7051 7630 -155 2445 66 10 7 chr15 21604624 21604929 -64090825 + AluY SINE Alu 1 306 -5 779 212 77 84 chr15 21604930 21605129 -64090625 + L1ME1 LINE L1 5195 5396 -770 1618 207 4 4 chr15 21605129 21605409 -64090345 + AluSx SINE Alu 4 283 -29 779 212 77 84 chr15 21605409 21605564 -64090190 + L1ME1 LINE L1 5396 5551 -615 1363 234 92 28 chr15 21605581 21605674 -64090080 + L1ME1 LINE L1 5742 5828 -338 2469 61 0 3 chr15 21605674 21605970 -64089784 + AluY SINE Alu 1 295 -16 1363 234 92 28 chr15 21605970 21606269 -64089485 + L1ME1 LINE L1 5828 6159 -7 225 0 0 0 chr15 21607917 21607942 -64087812 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 405 325 175 12 chr15 21608715 21609041 -64086713 + L2 LINE L2 676 1054 -2260 1089 181 70 0 chr15 21609052 21609267 -64086487 + AluJo SINE Alu 1 230 -82 234 327 120 77 chr15 21609274 21609690 -64086064 + L2 LINE L2 2839 3272 0 888 144 8 0 chr15 21610700 21610832 -64084922 + FLAM_C SINE Alu 1 133 0 2041 118 6 48 chr15 21612454 21612769 -64082985 + AluSq SINE Alu 1 302 -11 1747 214 107 120 chr15 21612778 21612878 -64082876 + L1MEc LINE L1 1202 1302 -5080 2080 129 3 3 chr15 21612878 21613172 -64082582 + AluSq SINE Alu 1 294 -19 1747 214 107 120 chr15 21613172 21613476 -64082278 + L1MEc LINE L1 1302 1608 -4774 573 167 167 0 chr15 21613476 21613578 -64082176 + AluJb SINE Alu 1 119 -193 1747 214 107 120 chr15 21613578 21614593 -64081161 + L1MEc LINE L1 1608 2697 -3685 1853 224 36 19 chr15 21614925 21614960 -64080794 + L1MEc LINE L1 3339 3372 -3010 1137 225 13 54 chr15 21614960 21615109 -64080645 + AluJb SINE Alu 1 132 -170 1746 176 0 0 chr15 21615109 21615404 -64080350 + AluSx SINE Alu 3 297 -15 1137 225 13 54 chr15 21615404 21615569 -64080185 + AluJb SINE Alu 132 302 0 1853 224 36 19 chr15 21615569 21615611 -64080143 + L1MEc LINE L1 3372 3412 -2970 1631 65 0 0 chr15 21615611 21615810 -64079944 + AluY SINE Alu 113 311 0 1853 224 36 19 chr15 21615810 21616317 -64079437 + L1MEc LINE L1 3412 3934 -2448 1810 193 29 33 chr15 21616335 21616904 -64078850 + L1MB5 LINE L1 5187 5746 -428 1723 104 8 4 chr15 21617136 21617387 -64078367 + MER57-int LTR ERV1 2394 2645 -2572 319 103 184 92 chr15 21617386 21617473 -64078281 + MER57-int LTR ERV1 5249 5343 -2194 * 2123 95 0 83 chr15 21617473 21617800 -64077954 - AluSx SINE Alu -12 300 1 1930 131 18 50 chr15 21618703 21619046 -64076708 + L1MB5 LINE L1 5843 6174 0 954 143 6 66 chr15 21619058 21619240 -64076514 + AluJb SINE Alu 1 171 -141 449 285 0 35 chr15 21619835 21620007 -64075747 - L1MEd LINE L1 -4932 1187 1022 252 0 0 0 chr15 21620707 21620735 -64075019 + (TG)n Simple_repeat Simple_repeat 1 28 0 5209 232 89 24 chr15 21620993 21623019 -64072735 - L1M4c LINE L1 -4483 2163 17 26861 27 4 0 chr15 21623019 21626938 -64068816 - L1PA3 LINE L1 0 6155 2224 10360 50 1 7 chr15 21626938 21628200 -64067554 - L1PA3 LINE L1 -4839 1307 54 516 254 152 5 chr15 21628478 21628695 -64067059 - MIR SINE MIR -1 261 13 2040 125 0 46 chr15 21628996 21629323 -64066431 + AluSx SINE Alu 1 312 0 211 274 0 0 chr15 21630100 21630151 -64065603 - L3 LINE CR1 -106 1471 1421 21 36 0 0 chr15 21630673 21630701 -64065053 + AT_rich Low_complexity Low_complexity 1 28 0 1027 140 26 79 chr15 21631977 21632206 -64063548 - MER20 DNA MER1_type 0 219 3 258 32 0 0 chr15 21632213 21632244 -64063510 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 3850 77 4 2 chr15 21632244 21632751 -64063003 + L1P LINE L1 3827 4334 -1812 339 87 22 0 chr15 21632893 21632939 -64062815 - MER20 DNA MER1_type -143 76 30 664 173 21 13 chr15 21632982 21633223 -64062531 + CT-rich Low_complexity Low_complexity 1 243 0 807 152 23 15 chr15 21633231 21633363 -64062391 - FLAM_C SINE Alu 0 133 1 213 314 35 23 chr15 21633419 21633505 -64062249 + L2 LINE L2 3112 3198 -74 212 331 121 16 chr15 21633736 21633860 -64061894 + MIR3 SINE MIR 66 202 -6 2068 156 0 0 chr15 21633935 21634242 -64061512 + AluJb SINE Alu 3 309 -3 258 93 116 0 chr15 21634268 21634311 -64061443 + MLT2C1 LTR ERVL 2 49 -348 * 375 229 110 17 chr15 21634304 21634422 -64061332 - MLT1J LTR MaLR -40 471 343 2125 121 10 3 chr15 21634426 21634733 -64061021 - MER49 LTR ERV1 0 923 615 2192 124 3 0 chr15 21634753 21635051 -64060703 - AluSx SINE Alu -13 299 1 859 182 0 7 chr15 21635051 21635199 -64060555 - MER49 LTR ERV1 -292 631 485 2328 89 0 3 chr15 21635199 21635501 -64060253 + AluY SINE Alu 1 301 -10 2320 103 20 86 chr15 21635501 21635575 -64060179 - MER49 LTR ERV1 -544 379 302 225 0 0 0 chr15 21635575 21635600 -64060154 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2320 103 20 86 chr15 21635600 21635921 -64059833 - MER49 LTR ERV1 -621 302 10 2244 126 0 7 chr15 21637390 21637700 -64058054 - AluSx SINE Alu -4 308 1 3598 168 74 6 chr15 21638035 21638748 -64057006 + L1MB8 LINE L1 5405 6166 -12 2224 81 18 0 chr15 21639833 21640118 -64055636 + AluSx SINE Alu 1 290 -22 27 29 0 0 chr15 21640168 21640202 -64055552 + AT_rich Low_complexity Low_complexity 1 34 0 814 255 57 21 chr15 21640238 21640520 -64055234 + MER20B DNA MER1_type 306 597 -186 1428 153 18 9 chr15 21640986 21641215 -64054539 + MER46A DNA MER2_type 6 236 0 205 200 89 0 chr15 21641352 21641397 -64054357 + L2 LINE L2 3263 3311 -2 724 262 32 63 chr15 21641670 21642017 -64053737 + LTR16A1 LTR ERVL 55 390 -67 505 104 0 0 chr15 21642019 21642086 -64053668 - AluSp/q SINE Alu -16 297 231 297 312 0 0 chr15 21642087 21642164 -64053590 + LTR16A1 LTR ERVL 381 457 0 916 161 195 99 chr15 21642222 21642284 -64053470 - MSTC LTR MaLR 0 428 373 1268 179 93 48 chr15 21642284 21642430 -64053324 + AluJo SINE Alu 1 139 -173 2447 81 0 0 chr15 21642430 21642727 -64053027 + AluY SINE Alu 1 297 -14 1268 179 93 48 chr15 21642727 21642871 -64052883 + AluJo SINE Alu 139 304 -8 916 161 195 99 chr15 21642871 21643162 -64052592 - MSTC LTR MaLR -55 373 41 31 0 0 0 chr15 21643175 21643206 -64052548 + AT_rich Low_complexity Low_complexity 1 31 0 621 58 0 0 chr15 21643206 21643292 -64052462 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 240 189 0 0 chr15 21643293 21643330 -64052424 - Alu SINE Alu -191 111 75 1386 143 0 23 chr15 21643330 21643547 -64052207 - AluJo SINE Alu -100 212 1 355 154 0 0 chr15 21643548 21643600 -64052154 - MSTC LTR MaLR -376 52 1 2156 90 0 28 chr15 21643694 21643982 -64051772 + AluSg SINE Alu 21 300 -10 457 95 0 0 chr15 21644397 21644460 -64051294 + Alu SINE Alu 240 302 -9 1728 157 19 26 chr15 21644951 21645264 -64050490 + AluJo SINE Alu 1 311 -1 238 250 0 0 chr15 21645461 21645505 -64050249 - MER8 DNA MER2_type 0 239 196 987 233 34 99 chr15 21645505 21645640 -64050114 - AluJb SINE Alu -1 301 159 1460 121 0 0 chr15 21645640 21645830 -64049924 - AluSg/x SINE Alu -32 278 89 987 233 34 99 chr15 21645830 21645855 -64049899 - AluJb SINE Alu -143 159 134 2262 88 3 14 chr15 21645855 21646149 -64049605 + AluSg SINE Alu 1 291 -19 987 233 34 99 chr15 21646149 21646309 -64049445 - AluJb SINE Alu -168 134 1 2416 198 40 2 chr15 21646555 21646999 -64048755 + MER65C LTR ERV1 1 461 0 485 243 10 129 chr15 21647096 21647227 -64048527 - MER5B DNA MER1_type 0 178 33 2032 122 19 0 chr15 21647227 21647556 -64048198 - AluSg SINE Alu 0 337 4 485 243 10 129 chr15 21647556 21647567 -64048187 - MER5B DNA MER1_type -145 33 22 429 36 0 0 chr15 21647567 21647622 -64048132 + (TG)n Simple_repeat Simple_repeat 2 56 0 485 243 10 129 chr15 21647622 21647679 -64048075 - MER5B DNA MER1_type -156 22 1 2601 212 138 72 chr15 21647694 21648408 -64047346 + MER21B LTR ERV1 1 667 -196 2267 167 14 39 chr15 21648408 21648429 -64047325 + MER57A LTR ERV1 1 21 -382 2029 128 3 0 chr15 21648429 21648718 -64047036 + AluSq SINE Alu 1 290 -23 2267 167 14 39 chr15 21648718 21648739 -64047015 + MER57A LTR ERV1 21 41 -362 1419 168 112 28 chr15 21648739 21649025 -64046729 + AluJo SINE Alu 1 310 -2 2267 167 14 39 chr15 21649025 21649394 -64046360 + MER57A LTR ERV1 41 403 0 2601 212 138 72 chr15 21649394 21649484 -64046270 + MER21B LTR ERV1 667 858 -5 874 114 0 54 chr15 21649743 21649892 -64045862 - FLAM_C SINE Alu -2 141 1 2260 142 24 6 chr15 21650147 21650485 -64045269 - MER2 DNA MER2_type 0 344 1 262 289 155 0 chr15 21650606 21650703 -64045051 + MIR3 SINE MIR 68 179 -29 1681 95 204 0 chr15 21651565 21651841 -64043913 + MER7A DNA MER2_type 18 335 -1 256 268 27 98 chr15 21651847 21651959 -64043795 + MIR3 SINE MIR 51 154 -54 263 186 0 0 chr15 21653145 21653188 -64042566 - 5S rRNA rRNA -78 43 1 211 217 43 0 chr15 21654101 21654147 -64041607 + L2 LINE L2 3199 3246 -26 1867 132 78 24 chr15 21654202 21654497 -64041257 - AluSx SINE Alu -1 311 1 259 228 139 0 chr15 21654869 21654970 -64040784 + Charlie7 DNA MER1_type 45 159 -2453 313 270 0 0 chr15 21655366 21655440 -64040314 + MIR SINE MIR 40 113 -149 1795 131 39 20 chr15 21655944 21656250 -64039504 - AluJo SINE Alu 0 312 1 496 264 91 53 chr15 21656466 21656674 -64039080 + MIR SINE MIR 46 261 -1 182 227 136 0 chr15 21657743 21657809 -64037945 - MIR SINE MIR -59 149 75 263 170 113 0 chr15 21658230 21658283 -64037471 + L2 LINE L2 3255 3313 0 211 205 0 0 chr15 21658283 21658322 -64037432 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 224 262 0 16 chr15 21658820 21658881 -64036873 + MIR SINE MIR 183 242 -20 21 0 0 0 chr15 21658900 21658921 -64036833 + AT_rich Low_complexity Low_complexity 1 21 0 835 162 7 7 chr15 21659431 21659567 -64036187 - AluJo SINE Alu -176 136 1 2349 202 82 27 chr15 21659684 21659768 -64035986 + L1ME1 LINE L1 5485 5563 -771 2309 124 0 0 chr15 21659768 21660074 -64035680 + AluSx SINE Alu 1 306 -6 2349 202 82 27 chr15 21660074 21660621 -64035133 + L1ME1 LINE L1 5563 6310 -24 23171 133 42 47 chr15 21660644 21662867 -64032887 + L1MA3 LINE L1 15 2247 -5477 2188 130 7 0 chr15 21662867 21663167 -64032587 + AluSx SINE Alu 1 302 -10 23171 133 42 47 chr15 21663167 21663499 -64032255 + L1MA3 LINE L1 2247 2579 -5145 2086 129 3 0 chr15 21663499 21663794 -64031960 + AluSg SINE Alu 1 296 -14 23171 133 42 47 chr15 21663794 21664663 -64031091 + L1MA3 LINE L1 2579 3451 -4273 1443 174 0 88 chr15 21664663 21664980 -64030774 + AluJb SINE Alu 1 289 -23 23171 133 42 47 chr15 21664980 21665690 -64030064 + L1MA3 LINE L1 3451 4163 -3561 2192 115 0 3 chr15 21665690 21665985 -64029769 - AluY SINE Alu -17 294 1 23171 133 42 47 chr15 21665985 21666889 -64028865 + L1MA3 LINE L1 4163 5070 -2654 2249 153 81 27 chr15 21666889 21667253 -64028501 + MSTA LTR MaLR 1 391 -37 2163 141 0 10 chr15 21667253 21667566 -64028188 - AluSx SINE Alu -2 310 1 2249 153 81 27 chr15 21667566 21667607 -64028147 + MSTA LTR MaLR 391 428 0 23171 133 42 47 chr15 21667607 21668378 -64027376 + L1MA3 LINE L1 5070 5843 -1881 2159 144 0 0 chr15 21668378 21668690 -64027064 + AluSx SINE Alu 1 312 0 23171 133 42 47 chr15 21668690 21669343 -64026411 + L1MA3 LINE L1 5843 6498 -1226 1210 196 20 42 chr15 21669343 21669649 -64026105 + AluSx SINE Alu 1 299 -13 23171 133 42 47 chr15 21669649 21670861 -64024893 + L1MA3 LINE L1 6498 7697 -27 49 0 0 0 chr15 21671387 21671436 -64024318 + AT_rich Low_complexity Low_complexity 1 49 0 1553 190 10 3 chr15 21671816 21672106 -64023648 + AluJb SINE Alu 6 297 -15 23 0 0 0 chr15 21672447 21672470 -64023284 + AT_rich Low_complexity Low_complexity 1 23 0 858 142 0 57 chr15 21672482 21672623 -64023131 + FLAM_A SINE Alu 1 133 0 374 218 197 16 chr15 21672651 21672793 -64022961 - MIR SINE MIR -68 140 16 310 164 14 14 chr15 21673011 21673084 -64022670 - L1ME4a LINE L1 -2 6119 6047 688 106 43 0 chr15 21673089 21673183 -64022571 + HY3 scRNA scRNA 1 98 -3 612 152 4 34 chr15 21673183 21673421 -64022333 + GA-rich Low_complexity Low_complexity 1 230 0 191 30 0 61 chr15 21674277 21674310 -64021444 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1872 128 7 47 chr15 21674631 21674927 -64020827 - AluSx SINE Alu -28 284 1 202 224 105 26 chr15 21675315 21675391 -64020363 - L2 LINE L2 -41 3272 3191 859 122 0 0 chr15 21675450 21675565 -64020189 + FLAM_C SINE Alu 12 126 -17 517 252 44 65 chr15 21675622 21675849 -64019905 - L1M4 LINE L1 -2631 3515 3296 1354 151 28 117 chr15 21675849 21676009 -64019745 - AluYb8 SINE Alu -22 296 178 2242 99 10 0 chr15 21676009 21676303 -64019451 - AluSx SINE Alu -15 297 1 1354 151 28 117 chr15 21676303 21676467 -64019287 - AluYb8 SINE Alu -140 178 1 517 252 44 65 chr15 21676467 21676560 -64019194 - L1M4 LINE L1 -2850 3296 3202 1080 226 28 0 chr15 21676771 21677023 -64018731 + LTR33 LTR ERVL 262 520 -1 230 337 35 0 chr15 21677123 21677209 -64018545 + L2 LINE L2 1335 1423 -1891 861 244 85 0 chr15 21677798 21678069 -64017685 - AluJo SINE Alu -4 308 15 1796 162 40 0 chr15 21678236 21678532 -64017222 - AluJo SINE Alu -4 308 1 317 319 40 31 chr15 21678547 21678773 -64016981 + L2 LINE L2 1916 2143 -1171 343 316 66 74 chr15 21679471 21679727 -64016027 + L2 LINE L2 3014 3267 -5 18713 130 21 94 chr15 21680013 21682541 -64013213 + L1PA7 LINE L1 12 2154 -3992 2370 90 0 7 chr15 21682541 21682842 -64012912 + AluSc SINE Alu 2 300 -9 18713 130 21 94 chr15 21682842 21684228 -64011526 + L1PA7 LINE L1 2154 3640 -2506 7547 59 1 0 chr15 21684568 21684672 -64011082 + L1PA7 LINE L1 4593 4695 -1459 207 0 0 0 chr15 21684672 21684695 -64011059 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7547 59 1 0 chr15 21684695 21686142 -64009612 + L1PA7 LINE L1 4695 6154 0 1622 179 10 3 chr15 21686176 21686466 -64009288 + AluSp SINE Alu 1 292 -21 499 168 21 0 chr15 21686692 21686787 -64008967 - AluJ/FLAM SINE Alu -210 102 6 49 0 0 0 chr15 21687167 21687216 -64008538 + AT_rich Low_complexity Low_complexity 1 49 0 1626 159 85 0 chr15 21688751 21689022 -64006732 - AluJb SINE Alu -18 294 1 180 0 0 0 chr15 21689197 21689217 -64006537 + (TA)n Simple_repeat Simple_repeat 2 21 0 779 183 9 0 chr15 21689225 21689340 -64006414 - FLAM_C SINE Alu -26 117 2 1097 182 52 0 chr15 21689970 21690162 -64005592 - AluJo SINE Alu -24 288 87 485 243 5 141 chr15 21690185 21690391 -64005363 + MER5B DNA MER1_type 1 178 0 3745 121 9 7 chr15 21690430 21690972 -64004782 - L1PB1 LINE L1 -4 6147 5605 4538 68 28 6 chr15 21690972 21691948 -64003806 + MER11A LTR ERVK 1 1235 -31 10426 189 5 20 chr15 21691959 21692779 -64002975 - L1PB1 LINE L1 -542 5609 4778 2186 108 0 23 chr15 21692779 21693086 -64002668 - AluY SINE Alu -11 300 1 10426 189 5 20 chr15 21693086 21694382 -64001372 - L1PB1 LINE L1 -1373 4778 3538 2164 136 0 13 chr15 21694382 21694698 -64001056 - AluSx SINE Alu 0 312 1 10426 189 5 20 chr15 21694698 21695193 -64000561 - L1PB1 LINE L1 -2613 3538 3037 2193 108 27 0 chr15 21695197 21695494 -64000260 - AluSq SINE Alu -8 305 1 23 33 0 0 chr15 21695564 21695594 -64000160 + AT_rich Low_complexity Low_complexity 1 30 0 1946 99 4 0 chr15 21695636 21695898 -63999856 - AluSc SINE Alu -3 306 44 1549 213 119 40 chr15 21696405 21696875 -63998879 + MLT1H LTR MaLR 1 507 -42 2373 83 0 3 chr15 21696875 21697176 -63998578 - AluY SINE Alu -11 300 1 1066 179 43 83 chr15 21697201 21697393 -63998361 - L1MA8 LINE L1 -5 6286 6111 2263 58 0 0 chr15 21697393 21697651 -63998103 - AluY SINE Alu -19 292 35 1066 179 43 83 chr15 21697651 21697783 -63997971 - L1MA8 LINE L1 -180 6111 5975 349 288 98 37 chr15 21697835 21698050 -63997704 + HAL1b LINE L1 515 742 -606 260 240 22 84 chr15 21699469 21699648 -63996106 + L1M3 LINE L1 4665 4832 -1314 549 315 84 18 chr15 21699749 21700202 -63995552 + L1M3 LINE L1 5330 5816 -364 958 127 0 7 chr15 21700312 21700462 -63995292 - L1MA1 LINE L1 0 6302 6154 21 36 0 0 chr15 21700476 21700504 -63995250 + AT_rich Low_complexity Low_complexity 1 28 0 18464 118 13 30 chr15 21700879 21701741 -63994013 - L1P LINE L1 -3264 2882 2007 2326 116 0 0 chr15 21701741 21702052 -63993702 - AluY SINE Alu 0 311 1 18464 118 13 30 chr15 21702052 21704109 -63991645 - L1P LINE L1 -4139 2007 11 14069 102 3 4 chr15 21704115 21706012 -63989742 + HERV9 LTR ERV1 3674 5568 -2831 10644 97 16 18 chr15 21706010 21707241 -63988513 + HERV9 LTR ERV1 6887 8116 -283 * 2397 85 3 7 chr15 21707241 21707546 -63988208 - AluY SINE Alu -7 304 1 10644 97 16 18 chr15 21707546 21707828 -63987926 + HERV9 LTR ERV1 8116 8397 -2 239 289 0 0 chr15 21707831 21707883 -63987871 + LTR30 LTR ERV1 1 52 -670 246 316 0 32 chr15 21709242 21709337 -63986417 - MIR3 SINE MIR -102 106 15 306 213 191 64 chr15 21709472 21709613 -63986141 - L2 LINE L2 -5 3267 3109 1958 158 30 0 chr15 21710130 21710428 -63985326 + AluSx SINE Alu 1 307 -5 327 212 248 44 chr15 21710564 21710701 -63985053 + MER20B DNA MER1_type 24 188 -595 342 0 0 0 chr15 21711418 21711456 -63984298 + (TTA)n Simple_repeat Simple_repeat 3 40 0 18805 31 4 0 chr15 21711456 21714419 -63981335 - L1PA3 LINE L1 -18 6137 3168 3974 28 0 10 chr15 21714420 21714913 -63980841 + L1PA3 LINE L1 2706 3193 -2953 419 281 124 22 chr15 21715541 21715726 -63980028 + MIR SINE MIR 27 230 -32 2247 122 3 0 chr15 21716287 21716591 -63979163 + AluSx SINE Alu 1 305 -7 230 53 26 0 chr15 21716592 21716630 -63979124 - MER5C DNA MER1_type -210 114 76 22 0 0 0 chr15 21717023 21717045 -63978709 + AT_rich Low_complexity Low_complexity 1 22 0 5149 143 140 7 chr15 21717587 21718487 -63977267 - LTR28 LTR ERV1 0 1020 1 475 211 86 8 chr15 21719303 21719431 -63976323 + AluJb SINE Alu 5 142 -170 7182 25 0 1 chr15 21719808 21720632 -63975122 - L1PA3 LINE L1 -79 6076 5254 770 137 15 23 chr15 21720635 21720766 -63974988 - AluJb SINE Alu -181 131 2 746 239 61 14 chr15 21720913 21721126 -63974628 + L1MB3 LINE L1 5729 5951 -232 636 71 12 0 chr15 21721259 21721343 -63974411 - AluSq/x SINE Alu -200 113 29 2113 135 3 0 chr15 21721369 21721672 -63974082 - AluSx SINE Alu -3 309 6 287 185 62 0 chr15 21721677 21721742 -63974012 + LTR37A LTR ERV1 287 355 -71 1636 193 3 17 chr15 21721742 21722043 -63973711 - AluJb SINE Alu -14 298 2 16229 75 2 3 chr15 21722435 21725433 -63970321 + L1PA6 LINE L1 3160 6153 -1 24101 113 32 17 chr15 21725435 21729014 -63966740 - HERV9 LTR ERV1 -4712 3687 54 724 174 50 0 chr15 21729036 21729157 -63966597 - LTR12 LTR ERV1 -236 478 352 293 266 21 11 chr15 21729157 21729251 -63966503 - LTR30 LTR ERV1 -104 618 524 898 205 16 21 chr15 21729319 21729509 -63966245 - LTR12 LTR ERV1 -510 204 16 1993 132 10 0 chr15 21729509 21729798 -63965956 + AluSx SINE Alu 13 304 -8 874 148 0 0 chr15 21729798 21729933 -63965821 - LTR8 LTR ERV1 -556 135 1 22219 133 51 49 chr15 21729933 21730746 -63965008 - HUERS-P1 LTR ERV1 0 6263 5453 1938 168 3 0 chr15 21730746 21731055 -63964699 - AluJb SINE Alu -2 310 1 22219 133 51 49 chr15 21731055 21734544 -63961210 - HUERS-P1 LTR ERV1 -810 5453 1242 186 43 0 0 chr15 21734544 21734567 -63961187 + (CA)n Simple_repeat Simple_repeat 2 24 0 22219 133 51 49 chr15 21734567 21735812 -63959942 - HUERS-P1 LTR ERV1 -5021 1242 1 4231 123 18 60 chr15 21735812 21736533 -63959221 - LTR8 LTR ERV1 0 691 1 1182 104 0 12 chr15 21737752 21737916 -63957838 + U1 snRNA snRNA 4 165 0 28 0 0 0 chr15 21737950 21737978 -63957776 + AT_rich Low_complexity Low_complexity 1 28 0 833 273 54 16 chr15 21738528 21738843 -63956911 - L2 LINE L2 -660 2654 2328 2479 116 13 84 chr15 21738844 21739309 -63956445 - MSTB1 LTR MaLR 0 432 1 7854 193 58 8 chr15 21739309 21740845 -63954909 - MSTB1-int LTR MaLR 0 1651 39 2354 91 0 10 chr15 21740845 21741143 -63954611 - AluY SINE Alu -16 295 1 359 310 63 0 chr15 21741150 21741308 -63954446 - L2 LINE L2 -1309 2005 1838 330 320 141 24 chr15 21741315 21741734 -63954020 - L2 LINE L2 0 3313 2846 1516 119 0 64 chr15 21742457 21742708 -63953046 + AluSx SINE Alu 1 235 -77 395 68 17 0 chr15 21742709 21742768 -63952986 + (GA)n Simple_repeat Simple_repeat 2 61 0 368 289 8 16 chr15 21742894 21743022 -63952732 + HAL1b LINE L1 521 647 -701 24 0 0 0 chr15 21743270 21743294 -63952460 + AT_rich Low_complexity Low_complexity 1 24 0 827 122 0 72 chr15 21743366 21743505 -63952249 + AluJo SINE Alu 7 135 -177 180 158 0 0 chr15 21743641 21743679 -63952075 + T-rich Low_complexity Low_complexity 1 38 0 37440 91 12 7 chr15 21743681 21749805 -63945949 - L1PA6 LINE L1 -1 6153 11 302 317 35 64 chr15 21749811 21750013 -63945741 + L1M4 LINE L1 2324 2519 -3627 247 267 22 11 chr15 21750071 21750161 -63945593 + L1M4 LINE L1 2651 2741 -3405 731 174 0 43 chr15 21750242 21750380 -63945374 + FLAM_C SINE Alu 2 133 0 776 227 0 6 chr15 21750400 21750576 -63945178 + L1M4 LINE L1 3608 3782 -2364 2327 90 13 7 chr15 21750583 21750884 -63944870 - AluSp SINE Alu -10 303 1 184 200 22 22 chr15 21750896 21750941 -63944813 - MER5B DNA MER1_type -124 54 10 2281 105 0 3 chr15 21751101 21751407 -63944347 - AluY SINE Alu -6 305 1 342 223 71 36 chr15 21751425 21751537 -63944217 + MIR SINE MIR 72 187 -75 190 333 108 0 chr15 21752927 21753038 -63942716 - L2 LINE L2 -10 3303 3181 586 201 97 0 chr15 21753169 21753313 -63942441 + MIR SINE MIR 63 220 -42 1081 172 63 77 chr15 21753355 21753640 -63942114 + MLT1D LTR MaLR 2 282 -223 186 314 0 0 chr15 21753954 21754005 -63941749 + MIR SINE MIR 177 227 -35 1353 180 79 0 chr15 21754005 21754272 -63941482 - MLT1D LTR MaLR 0 505 218 1577 172 108 13 chr15 21754729 21755043 -63940711 + MER2 DNA MER2_type 1 344 0 1088 196 14 19 chr15 21755064 21755278 -63940476 - AluJo SINE Alu -9 303 91 662 127 21 35 chr15 21755283 21755425 -63940329 - Charlie5 DNA MER1_type -62 2550 2411 1090 90 0 0 chr15 21755435 21755569 -63940185 + AluSx SINE Alu 3 136 -177 25 0 0 0 chr15 21755573 21755598 -63940156 + AT_rich Low_complexity Low_complexity 1 25 0 1169 140 0 6 chr15 21755607 21755785 -63939969 + AluSx SINE Alu 124 300 -12 606 173 122 8 chr15 21755787 21755918 -63939836 - MER33 DNA MER1_type -250 74 1 462 198 121 35 chr15 21756021 21756137 -63939617 - FLAM_C SINE Alu -4 129 4 2710 133 27 27 chr15 21756143 21756618 -63939136 - L1MA7 LINE L1 0 6291 5817 407 272 74 103 chr15 21757136 21757448 -63938306 - L2 LINE L2 -4 3268 2966 2281 112 3 0 chr15 21757480 21757783 -63937971 + AluSc SINE Alu 1 304 -5 397 309 111 11 chr15 21758717 21758898 -63936856 - MIR SINE MIR 0 262 64 810 263 42 33 chr15 21758898 21759324 -63936430 - L1M4 LINE L1 -2636 3510 3081 1618 192 10 7 chr15 21759331 21759639 -63936115 - AluJo SINE Alu -3 309 1 308 302 82 25 chr15 21759643 21759802 -63935952 - L1M4 LINE L1 -3856 2290 2123 2142 110 0 0 chr15 21760132 21760413 -63935341 - AluSx SINE Alu -31 281 1 623 140 123 26 chr15 21760434 21760548 -63935206 - FLAM_C SINE Alu -17 126 2 1013 220 69 4 chr15 21760647 21760879 -63934875 - MIR SINE MIR -14 248 2 21 0 0 0 chr15 21761011 21761032 -63934722 + AT_rich Low_complexity Low_complexity 1 21 0 234 237 0 0 chr15 21761187 21761246 -63934508 - MIR3 SINE MIR -11 197 139 1664 171 48 3 chr15 21761275 21761567 -63934187 - AluJo SINE Alu -7 305 1 2325 151 50 11 chr15 21761678 21762135 -63933619 + L1MB8 LINE L1 4869 5343 -803 4565 128 32 59 chr15 21762218 21762246 -63933508 + L1MB8 LINE L1 5348 5375 -803 1905 159 13 0 chr15 21762246 21762547 -63933207 + AluJb SINE Alu 1 305 -7 4565 128 32 59 chr15 21762547 21763369 -63932385 + L1MB8 LINE L1 5375 6175 -3 1054 268 70 50 chr15 21763674 21764114 -63931640 - MLT1J LTR MaLR -4 507 59 1372 192 96 29 chr15 21764116 21764397 -63931357 + AluJo SINE Alu 1 300 -2 513 0 0 0 chr15 21764405 21764462 -63931292 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 2198 125 0 0 chr15 21764732 21765036 -63930718 - AluSc SINE Alu -5 304 1 1046 143 23 6 chr15 21766024 21766199 -63929555 - MER61E LTR ERV1 -51 518 341 310 181 0 97 chr15 21766294 21766366 -63929388 - MER61E LTR ERV1 -406 163 99 217 403 81 7 chr15 21766734 21766883 -63928871 + MIR3 SINE MIR 35 194 -14 437 53 0 0 chr15 21766949 21767006 -63928748 + L1PA6 LINE L1 6097 6153 -1 2289 66 42 0 chr15 21767122 21767409 -63928345 - AluY SINE Alu -12 299 1 345 149 23 11 chr15 21767526 21767613 -63928141 + GA-rich Low_complexity Low_complexity 2 89 0 24 0 0 0 chr15 21768074 21768098 -63927656 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr15 21768877 21768898 -63926856 + AT_rich Low_complexity Low_complexity 1 21 0 280 206 41 14 chr15 21769237 21769310 -63926444 - MLT1K LTR MaLR -5 583 509 464 190 100 10 chr15 21769445 21769545 -63926209 - FRAM SINE Alu -26 150 42 1501 239 68 60 chr15 21769863 21770345 -63925409 + MLT1F LTR MaLR 1 486 -56 846 165 0 0 chr15 21770345 21770472 -63925282 + FLAM_C SINE Alu 1 127 -16 294 224 60 0 chr15 21770476 21770543 -63925211 + MLT1F LTR MaLR 497 567 0 952 137 0 127 chr15 21770771 21770872 -63924882 + MER20 DNA MER1_type 35 97 -122 2547 49 0 10 chr15 21770872 21771176 -63924578 - AluY SINE Alu -10 301 1 952 137 0 127 chr15 21771176 21771286 -63924468 + MER20 DNA MER1_type 97 219 0 2495 51 3 0 chr15 21771925 21772221 -63923533 - AluY SINE Alu -14 297 1 2440 75 7 0 chr15 21772790 21773095 -63922659 + AluY SINE Alu 1 307 -4 1637 174 3 30 chr15 21774173 21774477 -63921277 - AluJo SINE Alu -16 296 1 1081 163 0 100 chr15 21774502 21774575 -63921179 + AluJo SINE Alu 64 143 -169 1695 174 0 40 chr15 21774575 21774879 -63920875 + AluSx SINE Alu 1 292 -20 1081 163 0 100 chr15 21774879 21775044 -63920710 + AluJo SINE Alu 143 278 -34 198 0 0 0 chr15 21775044 21775066 -63920688 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 288 0 0 0 chr15 21775065 21775097 -63920657 + (CA)n Simple_repeat Simple_repeat 1 32 0 227 257 0 27 chr15 21775166 21775240 -63920514 + L1ME LINE L1 5630 5701 -420 886 175 10 73 chr15 21775251 21775457 -63920297 + AluSg/x SINE Alu 120 312 0 1757 149 14 14 chr15 21775508 21775804 -63919950 + AluSx SINE Alu 1 296 -16 2889 169 25 6 chr15 21776266 21776745 -63919009 + LTR42 LTR ERVL 8 495 0 1786 182 3 3 chr15 21776912 21777208 -63918546 - AluJb SINE Alu -14 298 3 294 122 0 0 chr15 21777354 21777395 -63918359 + U13 snRNA snRNA 5 45 -59 309 307 20 60 chr15 21777571 21777721 -63918033 + MIR SINE MIR 53 196 -66 2097 140 0 3 chr15 21778491 21778799 -63916955 - AluSx SINE Alu -5 307 1 190 340 125 28 chr15 21779048 21779192 -63916562 + MIR3 SINE MIR 16 173 -35 1137 89 0 19 chr15 21779372 21779530 -63916224 + AluY SINE Alu 157 311 0 2126 269 69 7 chr15 21779552 21780150 -63915604 + ERVL LTR ERVL 1041 1675 -4089 2062 157 104 27 chr15 21780168 21780581 -63915173 - MSTB2 LTR MaLR -12 445 1 4446 224 60 20 chr15 21780584 21781630 -63914124 + ERVL LTR ERVL 1678 2765 -2999 1843 76 8 38 chr15 21781630 21781894 -63913860 - AluY SINE Alu -7 304 49 808 189 73 24 chr15 21781899 21782105 -63913649 - MLT1B LTR MaLR -174 216 1 2025 118 0 38 chr15 21782315 21782630 -63913124 - AluSx SINE Alu -4 308 6 1887 154 16 7 chr15 21782887 21783192 -63912562 - AluJb SINE Alu -3 309 2 394 108 27 14 chr15 21783306 21783380 -63912374 + GA-rich Low_complexity Low_complexity 1 75 0 1042 132 0 0 chr15 21783504 21783648 -63912106 - AluSq/x SINE Alu -169 144 1 2349 133 56 3 chr15 21783657 21784034 -63911720 - L1MB4 LINE L1 0 6180 5784 2325 154 22 0 chr15 21784038 21784396 -63911358 - MER47A DNA MER2_type 0 366 1 1994 94 15 0 chr15 21784696 21784961 -63910793 - AluSq SINE Alu -22 291 23 328 165 19 1 chr15 21785072 21785142 -63910612 - Alu SINE Alu -249 52 1 2138 78 11 4 chr15 21785171 21785441 -63910313 + AluSx SINE Alu 25 296 -16 206 0 69 0 chr15 21786126 21786155 -63909599 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1708 128 24 0 chr15 21786542 21786792 -63908962 + AluSg1 SINE Alu 41 296 -13 1729 178 20 0 chr15 21788046 21788339 -63907415 + AluJo SINE Alu 1 299 -13 2068 159 95 36 chr15 21788513 21788933 -63906821 + MER65A LTR ERV1 1 445 0 2512 74 6 3 chr15 21788978 21789290 -63906464 + AluSp SINE Alu 1 313 0 1522 275 36 11 chr15 21789921 21790368 -63905386 - ERVL LTR ERVL -4266 1498 1041 2518 57 0 16 chr15 21790390 21790706 -63905048 - AluY SINE Alu 0 311 1 317 314 57 8 chr15 21790857 21790981 -63904773 - ERVL LTR ERVL -5090 674 545 1332 71 6 0 chr15 21791015 21791183 -63904571 + AluY SINE Alu 1 169 -142 412 194 83 46 chr15 21792376 21792484 -63903270 - L2 LINE L2 -1 3271 3160 189 250 145 13 chr15 21792488 21792564 -63903190 + MIR SINE MIR 66 151 -111 737 135 0 63 chr15 21792564 21792690 -63903064 + AluJb SINE Alu 2 118 -194 22 56 0 0 chr15 21792690 21792726 -63903028 + AT_rich Low_complexity Low_complexity 1 36 0 704 106 10 19 chr15 21792890 21792994 -63902760 + FAM SINE Alu 63 165 -20 1280 144 45 12 chr15 21793014 21793259 -63902495 - MER33 DNA MER1_type -88 236 1 288 211 30 4 chr15 21793397 21793635 -63902119 + (TA)n Simple_repeat Simple_repeat 1 244 0 235 173 19 0 chr15 21793658 21793710 -63902044 + (TA)n Simple_repeat Simple_repeat 1 53 0 380 200 191 26 chr15 21793745 21793860 -63901894 - MER5A DNA MER1_type -21 168 35 2090 112 0 39 chr15 21794136 21794441 -63901313 - AluSx SINE Alu -18 294 2 338 148 19 0 chr15 21794710 21794764 -63900990 + MER57A LTR ERV1 289 343 -60 339 185 37 12 chr15 21794874 21794955 -63900799 + L1MC4 LINE L1 6971 7053 -989 745 81 30 0 chr15 21794955 21795054 -63900700 + U6 snRNA snRNA 1 102 -5 228 163 0 0 chr15 21795083 21795126 -63900628 + GA-rich Low_complexity Low_complexity 3 45 0 845 271 96 27 chr15 21795126 21795640 -63900114 + L1MC4 LINE L1 6999 7510 -298 583 237 89 50 chr15 21795642 21795927 -63899827 + L1MC4 LINE L1 7691 7992 -50 2340 99 0 0 chr15 21795927 21796229 -63899525 - AluSc SINE Alu -7 302 1 583 237 89 50 chr15 21796229 21796280 -63899474 + L1MC4 LINE L1 7992 8040 -2 212 340 125 28 chr15 21796601 21796745 -63899009 - MIR3 SINE MIR -35 173 16 2188 131 0 3 chr15 21796994 21797307 -63898447 + AluSx SINE Alu 1 312 0 32 43 0 0 chr15 21797527 21797573 -63898181 + AT_rich Low_complexity Low_complexity 1 46 0 645 120 29 6 chr15 21797574 21797749 -63898005 + (TA)n Simple_repeat Simple_repeat 2 180 0 391 283 19 57 chr15 21798425 21798584 -63897170 - MIR SINE MIR -66 196 44 24 0 0 0 chr15 21798722 21798746 -63897008 + AT_rich Low_complexity Low_complexity 1 24 0 283 156 0 0 chr15 21798752 21798797 -63896957 - U13 snRNA snRNA -59 45 1 1717 191 3 3 chr15 21798935 21799229 -63896525 + AluJb SINE Alu 5 298 -14 2925 163 25 6 chr15 21799391 21799870 -63895884 - LTR42 LTR ERVL 0 495 8 1922 135 0 26 chr15 21800332 21800636 -63895118 - AluSx SINE Alu -16 296 1 938 159 0 44 chr15 21800699 21800881 -63894873 - AluJb SINE Alu -2 310 137 1047 181 0 99 chr15 21801063 21801231 -63894523 - AluJo SINE Alu -30 282 144 1499 174 0 51 chr15 21801231 21801525 -63894229 - AluSx SINE Alu -33 279 1 1047 181 0 99 chr15 21801525 21801599 -63894155 - AluJo SINE Alu -168 144 64 1625 173 3 33 chr15 21801624 21801931 -63893823 + AluJo SINE Alu 1 298 -14 2221 92 0 7 chr15 21803591 21803886 -63891868 + AluY SINE Alu 1 293 -18 2431 84 0 3 chr15 21804099 21804408 -63891346 - AluSq SINE Alu -5 308 1 2218 111 0 3 chr15 21804635 21804933 -63890821 - AluSx SINE Alu -15 297 1 22 80 0 0 chr15 21804943 21804993 -63890761 + AT_rich Low_complexity Low_complexity 1 50 0 2216 106 7 0 chr15 21805005 21805298 -63890456 - AluSx SINE Alu -17 295 1 684 125 29 0 chr15 21805675 21805779 -63889975 + U6 snRNA snRNA 1 107 0 282 207 16 41 chr15 21805837 21805958 -63889796 + (TA)n Simple_repeat Simple_repeat 2 119 0 523 148 157 0 chr15 21806291 21806399 -63889355 - MER94 DNA DNA 0 134 10 22 0 0 0 chr15 21806507 21806529 -63889225 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr15 21806883 21806911 -63888843 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr15 21807178 21807213 -63888541 + AT_rich Low_complexity Low_complexity 1 35 0 973 113 41 97 chr15 21807686 21807881 -63887873 - MER20 DNA MER1_type 0 219 36 379 176 0 0 chr15 21808111 21808179 -63887575 - MLT1F LTR MaLR 0 567 500 947 134 0 0 chr15 21808179 21808313 -63887441 - AluJo SINE Alu -178 134 1 1498 246 58 60 chr15 21808313 21808800 -63886954 - MLT1F LTR MaLR -56 486 1 444 169 0 56 chr15 21809137 21809211 -63886543 + AluJb SINE Alu 210 280 -32 180 0 0 0 chr15 21809211 21809231 -63886523 + (CA)n Simple_repeat Simple_repeat 2 21 0 444 169 0 56 chr15 21809231 21809245 -63886509 + AluJb SINE Alu 280 293 -19 274 206 41 14 chr15 21809354 21809427 -63886327 + MLT1K LTR MaLR 509 583 -5 23 0 0 0 chr15 21809772 21809795 -63885959 + AT_rich Low_complexity Low_complexity 1 23 0 214 177 16 16 chr15 21811050 21811112 -63884642 + CT-rich Low_complexity Low_complexity 1 62 0 263 371 74 17 chr15 21811390 21811565 -63884189 - MIR3 SINE MIR -14 194 10 490 212 62 0 chr15 21811796 21811909 -63883845 + LTR25 LTR ERV1 244 363 -431 335 153 0 97 chr15 21811906 21811978 -63883776 + MER61E LTR ERV1 99 163 -406 * 971 160 23 6 chr15 21812073 21812248 -63883506 + MER61E LTR ERV1 341 518 -51 1757 94 0 0 chr15 21813236 21813459 -63882295 + AluSc SINE Alu 1 223 -86 355 266 71 24 chr15 21813459 21813832 -63881922 + L1M4 LINE L1 3124 3510 -2636 386 272 136 14 chr15 21813832 21813979 -63881775 + MIR SINE MIR 64 228 -34 2184 78 3 53 chr15 21814608 21814927 -63880827 - AluY SINE Alu -8 303 1 2207 110 0 3 chr15 21815277 21815577 -63880177 - AluSc SINE Alu -8 301 3 445 262 63 110 chr15 21815606 21815923 -63879831 + L2 LINE L2 2967 3268 -4 2584 126 27 27 chr15 21816449 21816924 -63878830 + L1MA7 LINE L1 5817 6291 0 427 191 122 35 chr15 21816935 21817050 -63878704 + FLAM_C SINE Alu 4 128 -5 1065 143 77 59 chr15 21817153 21817286 -63878468 + MER33 DNA MER1_type 1 120 -2465 1269 161 20 141 chr15 21817286 21817634 -63878120 - AluYb8 SINE Alu -2 306 1 1065 143 77 59 chr15 21817634 21817791 -63877963 + MER33 DNA MER1_type 120 285 -39 1070 201 14 18 chr15 21817795 21818014 -63877740 + AluJo SINE Alu 86 303 -9 1020 171 5 37 chr15 21818139 21818355 -63877399 - MER2 DNA MER2_type -136 209 1 449 254 61 6 chr15 21818583 21818748 -63877006 + MER65A LTR ERV1 272 445 0 215 260 0 0 chr15 21818754 21818793 -63876961 + A-rich Low_complexity Low_complexity 4 42 -38 1717 179 6 3 chr15 21818793 21819105 -63876649 + AluSp SINE Alu 1 313 0 215 260 0 0 chr15 21819105 21819142 -63876612 + A-rich Low_complexity Low_complexity 41 80 0 429 275 116 35 chr15 21819196 21819416 -63876338 + L1ME LINE L1 5239 5476 -686 5781 220 74 19 chr15 21819457 21820853 -63874901 - ERVL LTR ERVL -2615 3149 1678 464 115 11 46 chr15 21820856 21820943 -63874811 + MSTB2 LTR MaLR 1 84 -373 266 299 15 22 chr15 21821071 21821205 -63874549 - ERVL LTR ERVL -4892 872 740 292 292 34 11 chr15 21821240 21821329 -63874425 - ERVL LTR ERVL -5129 635 545 2197 101 0 3 chr15 21821365 21821661 -63874093 + AluY SINE Alu 3 297 -14 302 191 16 0 chr15 21821662 21821725 -63874029 - L1P LINE L1 -2379 3767 3704 1673 278 74 25 chr15 21821828 21822908 -63872846 - L1M4 LINE L1 -2901 3245 2113 1039 314 79 44 chr15 21822915 21823080 -63872674 - L1M4 LINE L1 -2971 3175 3017 2407 114 14 0 chr15 21823080 21823430 -63872324 + THE1A LTR MaLR 1 355 0 1039 314 79 44 chr15 21823430 21823750 -63872004 - L1M4 LINE L1 -3129 3017 2709 2096 118 3 0 chr15 21823750 21824038 -63871716 + AluSg SINE Alu 1 289 -21 1039 314 79 44 chr15 21824038 21824415 -63871339 - L1M4 LINE L1 -3437 2709 2271 2149 119 14 0 chr15 21824415 21824709 -63871045 - AluSq SINE Alu -15 298 1 1039 314 79 44 chr15 21824709 21824836 -63870918 - L1M4 LINE L1 -3875 2271 2150 22 35 0 0 chr15 21824879 21824908 -63870846 + AT_rich Low_complexity Low_complexity 1 29 0 583 103 0 0 chr15 21825372 21825450 -63870304 + AluS SINE Alu 1 78 -234 397 160 3 1 chr15 21825465 21825553 -63870201 + LOR1-int LTR ERV1 946 1312 -5446 1729 93 0 13 chr15 21826356 21826582 -63869172 - AluSg/x SINE Alu -16 296 74 802 244 89 26 chr15 21826582 21826836 -63868918 + L1M4 LINE L1 2814 3050 -3096 2369 100 0 0 chr15 21826836 21827146 -63868608 - AluSx SINE Alu -2 310 1 802 244 89 26 chr15 21827146 21827349 -63868405 + L1M4 LINE L1 3050 3300 -2846 443 201 92 55 chr15 21827591 21827755 -63867999 + L1MC5 LINE L1 7610 7779 -182 1209 108 0 0 chr15 21828461 21828619 -63867135 + AluSg/x SINE Alu 135 292 -18 214 73 49 24 chr15 21828622 21828663 -63867091 + A-rich Low_complexity Low_complexity 3 44 0 266 318 47 0 chr15 21828780 21828909 -63866845 + L2 LINE L2 2252 2386 -928 402 212 93 42 chr15 21830104 21830222 -63865532 - L2 LINE L2 -1 3271 3148 705 127 0 63 chr15 21830290 21830416 -63865338 + AluJb SINE Alu 1 118 -194 22 56 0 0 chr15 21830416 21830452 -63865302 + AT_rich Low_complexity Low_complexity 1 36 0 2158 112 3 0 chr15 21830776 21831061 -63864693 - AluSx SINE Alu -26 286 1 363 122 12 98 chr15 21831666 21831748 -63864006 - MER33 DNA MER1_type -6 318 244 1039 164 0 6 chr15 21831752 21831917 -63863837 + FAM SINE Alu 2 165 -20 1233 137 47 9 chr15 21831933 21832167 -63863587 - MER33 DNA MER1_type -88 236 1 280 229 25 0 chr15 21832316 21832559 -63863195 + (TA)n Simple_repeat Simple_repeat 1 249 0 245 208 13 0 chr15 21832585 21832662 -63863092 + (TA)n Simple_repeat Simple_repeat 2 79 0 380 200 191 26 chr15 21832697 21832812 -63862942 - MER5A DNA MER1_type -21 168 35 2199 105 0 3 chr15 21833099 21833393 -63862361 - AluSx SINE Alu -18 294 2 2405 55 0 26 chr15 21833575 21833883 -63861871 - AluY SINE Alu -11 300 1 324 148 19 0 chr15 21833979 21834033 -63861721 + MER57A LTR ERV1 289 343 -60 351 173 37 12 chr15 21834143 21834224 -63861530 + L1MC4 LINE L1 6971 7053 -989 788 61 30 0 chr15 21834224 21834323 -63861431 + U6 snRNA snRNA 1 102 -5 228 163 0 0 chr15 21834352 21834395 -63861359 + GA-rich Low_complexity Low_complexity 3 45 0 857 265 33 19 chr15 21834396 21834909 -63860845 + L1MC4 LINE L1 7074 7629 -413 589 237 89 50 chr15 21834911 21835196 -63860558 + L1MC4 LINE L1 7691 7992 -50 2246 97 0 7 chr15 21835196 21835504 -63860250 - AluSc SINE Alu -3 306 1 589 237 89 50 chr15 21835504 21835555 -63860199 + L1MC4 LINE L1 7992 8040 -2 23 0 0 0 chr15 21835576 21835599 -63860155 + AT_rich Low_complexity Low_complexity 1 23 0 212 340 125 28 chr15 21835882 21836026 -63859728 - MIR3 SINE MIR -35 173 16 1953 169 0 3 chr15 21836275 21836588 -63859166 + AluSx SINE Alu 1 312 0 729 228 5 5 chr15 21836868 21837052 -63858702 - L1M4 LINE L1 -2364 3782 3599 702 179 0 0 chr15 21837052 21837175 -63858579 - AluJb SINE Alu -187 125 3 2820 73 4 53 chr15 21837582 21842773 -63852981 + L1PA6 LINE L1 1029 6153 -1 783 145 0 69 chr15 21842943 21843088 -63852666 - AluJo SINE Alu -177 135 1 21 57 0 0 chr15 21843152 21843187 -63852567 + AT_rich Low_complexity Low_complexity 1 35 0 383 259 36 25 chr15 21843418 21843564 -63852190 - HAL1b LINE L1 -701 647 521 255 103 0 0 chr15 21843689 21843728 -63852026 + (TC)n Simple_repeat Simple_repeat 1 39 0 1395 138 0 96 chr15 21843730 21843990 -63851764 - AluSx SINE Alu -77 235 1 471 325 138 23 chr15 21844706 21845133 -63850621 + L2 LINE L2 2838 3313 0 684 273 158 43 chr15 21845140 21845583 -63850171 + L2 LINE L2 1838 2331 -983 2728 116 18 34 chr15 21845583 21846022 -63849732 + MSTB1 LTR MaLR 1 432 0 7964 194 56 13 chr15 21846022 21846427 -63849327 + MSTB1-int LTR MaLR 1 387 -1264 2390 49 3 16 chr15 21846427 21846734 -63849020 - AluY SINE Alu -8 303 1 7964 194 56 13 chr15 21846734 21847910 -63847844 + MSTB1-int LTR MaLR 387 1651 0 2478 114 13 84 chr15 21847910 21848375 -63847379 + MSTB1 LTR MaLR 1 432 0 928 277 54 16 chr15 21848376 21848690 -63847064 + L2 LINE L2 2328 2653 -661 24 0 0 0 chr15 21849245 21849269 -63846485 + AT_rich Low_complexity Low_complexity 1 24 0 670 95 0 0 chr15 21849301 21849385 -63846369 - U1 snRNA snRNA 0 165 82 305 167 21 111 chr15 21849485 21849629 -63846125 + Charlie5 DNA MER1_type 2416 2546 -66 1159 164 14 18 chr15 21849633 21849852 -63845902 + AluJo SINE Alu 86 303 -9 1230 137 14 19 chr15 21849976 21850188 -63845566 - MER2 DNA MER2_type -134 211 1 1358 189 70 14 chr15 21850641 21850926 -63844828 + MLT1D LTR MaLR 205 505 0 208 294 0 0 chr15 21850926 21850977 -63844777 - MIR SINE MIR -35 227 177 1119 165 67 77 chr15 21851286 21851571 -63844183 - MLT1D LTR MaLR -223 282 1 599 201 97 0 chr15 21851612 21851756 -63843998 - MIR SINE MIR -42 220 63 196 333 108 0 chr15 21851887 21851998 -63843756 + L2 LINE L2 3181 3303 -10 349 311 47 20 chr15 21853384 21853532 -63842222 - MIR SINE MIR -55 207 56 1726 91 0 21 chr15 21853536 21853777 -63841977 + AluY SINE Alu 4 239 -72 390 103 0 17 chr15 21853878 21853936 -63841818 - U1 snRNA snRNA -104 61 5 213 65 0 0 chr15 21854872 21854903 -63840851 + (CA)n Simple_repeat Simple_repeat 1 31 0 4448 116 14 59 chr15 21855173 21855897 -63839857 + LTR8 LTR ERV1 1 691 0 18051 140 34 47 chr15 21855897 21859274 -63836480 + HUERS-P1 LTR ERV1 1 3332 -2931 6555 155 44 10 chr15 21859277 21859662 -63836092 + HUERS-P1 LTR ERV1 3577 3948 -2315 1876 174 0 0 chr15 21859662 21859972 -63835782 + AluJb SINE Alu 1 310 -2 6555 155 44 10 chr15 21859972 21860786 -63834968 + HUERS-P1 LTR ERV1 3948 6263 0 945 115 0 0 chr15 21860786 21860916 -63834838 + LTR8 LTR ERV1 1 130 -561 1914 129 0 0 chr15 21860916 21861196 -63834558 - AluSx SINE Alu -2 310 31 251 250 0 0 chr15 21861196 21861248 -63834506 + LTR30 LTR ERV1 1 52 -670 794 180 29 100 chr15 21861248 21861487 -63834267 + LTR12 LTR ERV1 53 274 -440 251 267 27 0 chr15 21861491 21861566 -63834188 + LTR30 LTR ERV1 544 620 -102 715 189 76 0 chr15 21861566 21861698 -63834056 + LTR12 LTR ERV1 355 496 -218 24541 111 27 22 chr15 21861704 21863527 -63832227 + HERV9 LTR ERV1 52 1864 -6535 2153 107 0 0 chr15 21863527 21863827 -63831927 - AluY SINE Alu -3 308 9 24541 111 27 22 chr15 21863827 21865622 -63830132 + HERV9 LTR ERV1 1864 3688 -4711 37980 82 13 20 chr15 21865622 21866867 -63828887 - L1PA6 LINE L1 0 6154 4902 2135 100 0 3 chr15 21866867 21867190 -63828564 - AluY SINE Alu 0 311 1 37980 82 13 20 chr15 21867190 21872129 -63823625 - L1PA6 LINE L1 -1252 4902 11 1446 137 0 0 chr15 21872135 21872340 -63823414 + HERV9 LTR ERV1 3674 3878 -4521 2051 150 9 41 chr15 21872357 21872698 -63823056 + LTR8 LTR ERV1 362 691 0 2012 105 7 7 chr15 21872931 21873227 -63822527 - AluSq SINE Alu -17 296 1 183 231 39 0 chr15 21873275 21873327 -63822427 - L2 LINE L2 -19 3294 3241 302 250 61 104 chr15 21873386 21873550 -63822204 + MER5A DNA MER1_type 28 184 -5 1867 47 51 4 chr15 21873638 21873886 -63821868 + AluY SINE Alu 1 263 -48 192 40 0 0 chr15 21873886 21873911 -63821843 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 265 326 0 32 chr15 21875389 21875484 -63820270 - MIR3 SINE MIR -102 106 15 356 231 172 59 chr15 21875619 21875788 -63819966 - L2 LINE L2 -5 3267 3080 1718 156 45 0 chr15 21876267 21876556 -63819198 + AluSx SINE Alu 1 302 -10 276 246 285 23 chr15 21876694 21876824 -63818930 + MER20B DNA MER1_type 25 188 -595 462 285 124 27 chr15 21878208 21878394 -63817360 + MIR SINE MIR 27 230 -32 264 289 108 12 chr15 21878838 21878921 -63816833 - MER5C DNA MER1_type 0 324 234 2004 125 3 7 chr15 21878955 21879260 -63816494 + AluSx SINE Alu 1 304 -8 222 81 27 0 chr15 21879263 21879300 -63816454 - MER5C DNA MER1_type -211 113 76 5015 151 155 1 chr15 21880249 21881133 -63814621 - LTR28 LTR ERV1 0 1020 1 224 196 22 120 chr15 21881678 21881770 -63813984 - L2 LINE L2 -172 3100 3018 1522 164 63 7 chr15 21881965 21882251 -63813503 + AluJo SINE Alu 11 312 0 22 0 0 0 chr15 21882525 21882547 -63813207 + AT_rich Low_complexity Low_complexity 1 22 0 767 142 17 0 chr15 21882547 21882667 -63813087 - AluJb SINE Alu -189 123 2 1760 212 53 5 chr15 21882814 21883229 -63812525 + L1MB2 LINE L1 5729 6163 -8 190 298 18 0 chr15 21883309 21883366 -63812388 + L2 LINE L2 2299 2356 -958 1199 176 96 58 chr15 21884100 21884413 -63811341 + MER2 DNA MER2_type 1 325 -20 2484 134 48 71 chr15 21884441 21884963 -63810791 - LTR54 LTR ERV1 0 510 1 365 298 65 0 chr15 21885100 21885224 -63810530 - MIR SINE MIR -109 153 22 4725 123 67 64 chr15 21885558 21887180 -63808574 + pTR5 LTR ERV1 65 2428 -10 1603 140 0 37 chr15 21887323 21887595 -63808159 + AluSx SINE Alu 1 262 -50 2927 69 3 0 chr15 21888515 21888891 -63806863 + L1PA8 LINE L1 5793 6169 -3 569 39 0 13 chr15 21889020 21889097 -63806657 + (TTCC)n Simple_repeat Simple_repeat 2 77 0 518 264 138 11 chr15 21889175 21889349 -63806405 + MIR SINE MIR 62 257 -5 229 329 27 0 chr15 21889886 21889959 -63805795 + MIR SINE MIR 70 144 -118 2077 110 3 0 chr15 21890037 21890327 -63805427 - AluSx SINE Alu -19 293 3 237 108 0 0 chr15 21890457 21890494 -63805260 + (CTA)n Simple_repeat Simple_repeat 1 37 0 2058 100 0 0 chr15 21893111 21893432 -63802322 + AluSx SINE Alu 1 321 0 245 171 0 0 chr15 21893644 21893685 -63802069 - MLT2B1 LTR ERVL 0 520 480 198 103 0 0 chr15 21893685 21893714 -63802040 + (TATG)n Simple_repeat Simple_repeat 4 32 0 1432 135 127 4 chr15 21893723 21893967 -63801787 - MLT2C2 LTR ERVL -190 274 1 413 329 72 66 chr15 21894349 21894668 -63801086 - L2 LINE L2 -5 3267 2947 832 199 60 12 chr15 21894999 21895165 -63800589 + AluJo SINE Alu 124 297 -15 22 0 0 0 chr15 21895436 21895458 -63800296 + AT_rich Low_complexity Low_complexity 1 22 0 773 148 0 8 chr15 21895458 21895580 -63800174 - FLAM_C SINE Alu -12 121 1 1644 213 45 26 chr15 21895726 21896153 -63799601 + L1MB2 LINE L1 5729 6163 -8 190 298 18 0 chr15 21896232 21896289 -63799465 + L2 LINE L2 2299 2356 -958 1199 176 96 58 chr15 21897023 21897336 -63798418 + MER2 DNA MER2_type 1 325 -20 2440 138 48 71 chr15 21897364 21897886 -63797868 - LTR54 LTR ERV1 0 510 1 365 298 65 0 chr15 21898023 21898147 -63797607 - MIR SINE MIR -109 153 22 1642 121 0 37 chr15 21898628 21898900 -63796854 + AluJb SINE Alu 1 262 -50 329 57 0 19 chr15 21898940 21898993 -63796761 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 2870 79 3 0 chr15 21899852 21900231 -63795523 + L1PA8 LINE L1 5793 6172 0 348 111 0 0 chr15 21900360 21900414 -63795340 + (TTCC)n Simple_repeat Simple_repeat 1 54 0 538 263 158 11 chr15 21900477 21900667 -63795087 + MIR SINE MIR 40 257 -5 235 329 27 0 chr15 21901199 21901272 -63794482 + MIR SINE MIR 70 144 -118 215 239 43 0 chr15 21901287 21901333 -63794421 + L2 LINE L2 3210 3257 -15 2247 99 3 0 chr15 21901352 21901655 -63794099 - AluSx SINE Alu -6 306 3 237 108 0 0 chr15 21901789 21901826 -63793928 + (CTA)n Simple_repeat Simple_repeat 1 37 0 2186 113 0 0 chr15 21904441 21904752 -63791002 + AluSx SINE Alu 1 311 -1 245 171 0 0 chr15 21904951 21904992 -63790762 - MLT2B1 LTR ERVL 0 520 480 198 103 0 0 chr15 21904992 21905021 -63790733 + (TATG)n Simple_repeat Simple_repeat 4 32 0 1399 143 127 4 chr15 21905030 21905274 -63790480 - MLT2C2 LTR ERVL -190 274 1 413 329 72 66 chr15 21905656 21905975 -63789779 - L2 LINE L2 -5 3267 2947 604 269 94 34 chr15 21906835 21906893 -63788861 - MIR SINE MIR -8 254 201 1829 165 3 0 chr15 21906893 21907202 -63788552 - AluSx SINE Alu 0 312 3 604 269 94 34 chr15 21907202 21907377 -63788377 - MIR SINE MIR -61 201 7 1845 134 16 39 chr15 21907463 21907769 -63787985 + AluSx SINE Alu 1 299 -13 1890 159 10 0 chr15 21907921 21908222 -63787532 + AluJo SINE Alu 1 304 -8 1989 125 0 10 chr15 21908448 21908745 -63787009 - AluSx SINE Alu -18 294 1 2128 129 0 0 chr15 21908936 21909245 -63786509 + AluSx SINE Alu 1 309 -3 794 99 0 0 chr15 21909305 21909416 -63786338 - HY1 scRNA scRNA -1 111 1 188 151 0 151 chr15 21909428 21909481 -63786273 - MIR SINE MIR -14 248 204 261 344 104 0 chr15 21909663 21909788 -63785966 + MIR SINE MIR 113 250 -12 1028 171 0 17 chr15 21910633 21910808 -63784946 + AluJb SINE Alu 5 176 -136 1214 146 45 5 chr15 21910824 21911023 -63784731 - MER61E LTR ERV1 -22 547 341 375 191 31 71 chr15 21911072 21911200 -63784554 - MER61E LTR ERV1 -380 189 75 681 157 9 0 chr15 21911203 21911311 -63784443 - LTR25 LTR ERV1 -438 356 248 396 235 67 27 chr15 21911299 21911448 -63784306 - MER61E LTR ERV1 -413 156 2 * 891 129 0 7 chr15 21911448 21911588 -63784166 + AluJb SINE Alu 172 310 -2 280 186 14 43 chr15 21911631 21911701 -63784053 + L1ME2 LINE L1 5726 5793 -371 1420 194 20 31 chr15 21911782 21912076 -63783678 - AluJo SINE Alu -21 291 1 800 128 0 60 chr15 21912091 21912224 -63783530 - FLAM_C SINE Alu -18 125 1 965 201 4 64 chr15 21912231 21912480 -63783274 + L1ME2 LINE L1 5831 6064 -100 306 253 25 139 chr15 21912541 21912786 -63782968 + L1MC4 LINE L1 7826 8042 0 306 286 29 38 chr15 21914080 21914185 -63781569 + MIR SINE MIR 38 141 -121 317 258 0 43 chr15 21914222 21914315 -63781439 - MIR SINE MIR -26 236 148 810 246 22 6 chr15 21914906 21915089 -63780665 + MIR SINE MIR 65 250 -12 351 271 28 94 chr15 21916377 21916558 -63779196 + MIR SINE MIR 34 202 -60 2146 88 0 3 chr15 21916945 21917268 -63778486 + AluY SINE Alu 1 322 0 849 233 38 42 chr15 21917400 21917640 -63778114 + MIR SINE MIR 24 262 0 1948 137 3 3 chr15 21918094 21918387 -63777367 + AluJb SINE Alu 1 293 -19 2030 142 0 3 chr15 21918428 21918737 -63777017 + AluSx SINE Alu 2 309 -3 239 97 0 0 chr15 21918799 21918830 -63776924 - Alu SINE Alu -60 239 209 301 255 227 93 chr15 21919384 21919521 -63776233 - L1ME4a LINE L1 -82 6039 5922 2126 121 0 0 chr15 21919521 21919819 -63775935 + AluSx SINE Alu 1 298 -14 301 255 227 93 chr15 21919819 21919897 -63775857 - L1ME4a LINE L1 -199 5922 5795 288 266 177 9 chr15 21920485 21920598 -63775156 - L2 LINE L2 -7 3265 3134 249 57 0 0 chr15 21920891 21920926 -63774828 + (TG)n Simple_repeat Simple_repeat 2 36 0 1227 105 139 38 chr15 21920970 21921179 -63774575 + MER30 DNA MER1_type 1 230 0 201 355 64 0 chr15 21922140 21922250 -63773504 - MIR SINE MIR 0 262 146 229 222 0 0 chr15 21922800 21922845 -63772909 - L2 LINE L2 -18 3295 3251 2226 84 3 0 chr15 21924772 21925068 -63770686 + AluY SINE Alu 1 297 -14 220 179 0 0 chr15 21925069 21925108 -63770646 + GA-rich Low_complexity Low_complexity 1 39 0 495 285 24 30 chr15 21927447 21927612 -63768142 - MIR3 SINE MIR -15 193 30 1195 176 34 42 chr15 21928974 21929213 -63766541 - AluJo SINE Alu -75 237 1 300 221 142 35 chr15 21929224 21929337 -63766417 - L1MC5 LINE L1 -370 7591 7467 323 276 44 82 chr15 21929400 21929719 -63766035 - L1ME4a LINE L1 -218 5903 5597 204 283 57 0 chr15 21929915 21929968 -63765786 + MIR SINE MIR 87 142 -66 1872 138 20 3 chr15 21931077 21931373 -63764381 - AluSx SINE Alu -11 301 1 2721 150 53 0 chr15 21931500 21931934 -63763820 - MSTB2 LTR MaLR 0 457 1 287 314 51 8 chr15 21932816 21932934 -63762820 + MIR SINE MIR 69 191 -71 193 281 105 0 chr15 21933022 21933079 -63762675 + MIR3 SINE MIR 125 187 -21 276 203 0 17 chr15 21933403 21933462 -63762292 + L2 LINE L2 3202 3259 -13 1129 116 0 29 chr15 21933910 21934082 -63761672 - AluSg/x SINE Alu -9 301 135 666 267 20 0 chr15 21934205 21934355 -63761399 - MIR SINE MIR -17 245 93 2200 70 30 7 chr15 21935292 21935592 -63760162 + AluY SINE Alu 1 307 -4 781 102 8 0 chr15 21935607 21935725 -63760029 + L1PA8 LINE L1 6054 6172 0 2162 220 90 13 chr15 21935785 21936462 -63759292 - L1M4 LINE L1 -1311 4835 4107 2415 46 0 13 chr15 21936474 21936777 -63758977 - AluY SINE Alu -12 299 1 2942 170 32 4 chr15 21936784 21937277 -63758477 - L1P3 LINE L1 -5367 508 2 920 212 145 113 chr15 21937818 21937889 -63757865 - MLT2B1 LTR ERVL 0 520 453 345 62 0 0 chr15 21937889 21937937 -63757817 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 920 212 145 113 chr15 21937937 21937960 -63757794 - MLT2B1 LTR ERVL -67 453 432 2351 78 0 10 chr15 21937960 21938267 -63757487 + AluY SINE Alu 1 304 -7 920 212 145 113 chr15 21938267 21938675 -63757079 - MLT2B1 LTR ERVL -88 432 1 204 296 0 19 chr15 21938897 21938951 -63756803 - MIR SINE MIR -96 166 114 410 304 0 37 chr15 21939266 21939401 -63756353 + MIR3 SINE MIR 78 207 -1 342 258 97 32 chr15 21940137 21940261 -63755493 + L1ME4a LINE L1 5976 6107 -14 181 281 0 62 chr15 21941132 21941196 -63754558 - MIR SINE MIR -111 151 92 267 311 34 0 chr15 21941202 21941321 -63754433 - LTR16A1 LTR ERVL -26 431 309 2037 146 27 29 chr15 21941321 21941697 -63754057 + THE1C LTR MaLR 1 375 0 2462 52 3 0 chr15 21941857 21942162 -63753592 - AluY SINE Alu -5 306 1 309 317 57 32 chr15 21942285 21942408 -63753346 + L2 LINE L2 3180 3305 -8 347 333 0 0 chr15 21943873 21943969 -63751785 - MIR3 SINE MIR -32 176 81 340 226 33 30 chr15 21944196 21944301 -63751453 - MIR SINE MIR -64 144 59 372 308 57 34 chr15 21944620 21944883 -63750871 - HAL1 LINE L1 -17 2490 2222 379 272 58 69 chr15 21944954 21945127 -63750627 - HAL1b LINE L1 -428 920 750 2445 97 0 0 chr15 21945491 21945799 -63749955 - AluSg SINE Alu -2 308 1 835 283 116 27 chr15 21946138 21946551 -63749203 - LTR16A LTR ERVL 0 450 1 485 320 53 0 chr15 21946653 21946803 -63748951 - MER91A DNA MER1_type -19 177 20 691 179 152 7 chr15 21947818 21947969 -63747785 + MLT1B LTR MaLR 1 173 -217 671 313 61 8 chr15 21948067 21948313 -63747441 + LTR16C LTR ERVL 230 488 -3 270 324 89 28 chr15 21949168 21949347 -63746407 + MIR SINE MIR 20 209 -53 1296 180 129 37 chr15 21949355 21949788 -63745966 - Charlie4a DNA MER1_type -2 506 34 706 194 15 112 chr15 21950270 21950466 -63745288 - MER63A DNA MER1_type -33 177 1 541 117 96 0 chr15 21950808 21950902 -63744852 - MER58 DNA MER1_type 0 2420 2318 462 204 71 0 chr15 21951253 21951351 -63744403 - MER103 DNA DNA -49 117 13 2302 41 7 17 chr15 21951735 21952026 -63743728 - L1PA4 LINE L1 -1 6154 5867 202 135 27 0 chr15 21952063 21952100 -63743654 + T-rich Low_complexity Low_complexity 3 40 0 1519 93 28 0 chr15 21952101 21952315 -63743439 - L1PA10 LINE L1 0 6168 5949 2348 84 0 3 chr15 21952397 21952729 -63743025 - AluY SINE Alu 0 311 1 486 191 9 38 chr15 21953030 21953135 -63742619 - LTR33A LTR ERVL 0 523 422 1258 230 202 3 chr15 21953225 21953616 -63742138 - LTR50 LTR ERVL -323 472 4 249 108 0 0 chr15 21954151 21954188 -63741566 + (T)n Simple_repeat Simple_repeat 1 37 0 212 254 34 0 chr15 21954261 21954320 -63741434 + MIR SINE MIR 48 108 -154 506 316 116 4 chr15 21954809 21955034 -63740720 - MIR SINE MIR -10 252 3 325 311 175 23 chr15 21955112 21955289 -63740465 - MIR SINE MIR -12 250 47 306 148 0 0 chr15 21956673 21956727 -63739027 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 2283 108 3 6 chr15 21956792 21957106 -63738648 - AluSq SINE Alu 0 313 1 187 313 46 84 chr15 21957164 21957295 -63738459 - L2 LINE L2 0 3272 3147 946 254 24 111 chr15 21957310 21957842 -63737912 + L2 LINE L2 2826 3311 -2 2163 76 11 4 chr15 21958248 21958525 -63737229 - AluY SINE Alu -2 309 31 202 259 0 0 chr15 21958525 21958579 -63737175 + L2 LINE L2 3219 3272 0 211 369 72 38 chr15 21958612 21958848 -63736906 + L2 LINE L2 3025 3268 -4 448 251 114 75 chr15 21959069 21959141 -63736613 - L1ME4a LINE L1 -253 5868 5800 2381 76 7 3 chr15 21959141 21959442 -63736312 - AluY SINE Alu -9 302 1 448 251 114 75 chr15 21959442 21959727 -63736027 - L1ME4a LINE L1 -321 5800 5497 2311 110 0 10 chr15 21961051 21961359 -63734395 + AluSp SINE Alu 1 305 -8 247 294 130 0 chr15 21962016 21962108 -63733646 - MLT1J2 LTR MaLR -338 211 108 775 163 25 89 chr15 21962235 21962437 -63733317 - MER53 DNA DNA 0 189 1 203 147 0 0 chr15 21963470 21963504 -63732250 + (GTGTG)n Simple_repeat Simple_repeat 2 35 0 234 0 0 0 chr15 21964120 21964146 -63731608 + (TG)n Simple_repeat Simple_repeat 2 27 0 1540 288 107 26 chr15 21964970 21966008 -63729746 + L2 LINE L2 2191 3313 0 2312 97 0 7 chr15 21966085 21966385 -63729369 - AluY SINE Alu -13 298 1 1451 247 46 44 chr15 21967421 21967829 -63727925 - L1MDb LINE L1 -5922 487 76 7058 82 35 22 chr15 21967829 21968823 -63726931 + LTR13 LTR ERVK 1 1007 0 1451 247 46 44 chr15 21968823 21968892 -63726862 - L1MDb LINE L1 -6333 76 9 618 299 104 24 chr15 21968969 21969297 -63726457 - ERVL LTR ERVL -1134 4630 4277 230 238 68 61 chr15 21969386 21969533 -63726221 - L1ME LINE L1 -296 5825 5678 288 261 0 0 chr15 21969639 21969704 -63726050 - MER91B DNA MER1_type -125 65 1 * 379 248 64 9 chr15 21969704 21969812 -63725942 + MIR SINE MIR 57 170 -92 251 204 0 0 chr15 21971177 21971221 -63724533 - Charlie4 DNA MER1_type -17 1944 1901 * 1505 240 63 11 chr15 21971213 21971592 -63724162 + MLT1H LTR MaLR 151 549 0 293 320 8 24 chr15 21971642 21971767 -63723987 - MLT1J2 LTR MaLR -309 141 19 410 279 104 15 chr15 21972316 21972529 -63723225 + MIR SINE MIR 19 252 -10 1080 127 0 12 chr15 21972767 21972940 -63722814 + L1MA1 LINE L1 6132 6302 0 585 315 98 28 chr15 21972945 21973484 -63722270 - L1MB2 LINE L1 -243 5928 5352 255 275 12 70 chr15 21973603 21973774 -63721980 - L1MB2 LINE L1 -1313 4833 4673 526 167 0 12 chr15 21973877 21973961 -63721793 - AluJb SINE Alu -58 254 172 386 235 67 27 chr15 21973961 21974110 -63721644 + MER61E LTR ERV1 2 156 -413 * 677 157 9 0 chr15 21974098 21974206 -63721548 + LTR25 LTR ERV1 248 356 -438 343 241 8 47 chr15 21974209 21974337 -63721417 + MER61E LTR ERV1 75 189 -380 1245 141 45 5 chr15 21974386 21974585 -63721169 + MER61E LTR ERV1 341 547 -22 2317 154 19 11 chr15 21974618 21974994 -63720760 + MER61E-int LTR ERV1 29 407 -6589 1309 96 52 9 chr15 21975096 21975325 -63720429 - MER52-int LTR ERV1 -3343 4194 3956 701 167 144 0 chr15 21975301 21975433 -63720321 - MER52-int LTR ERV1 -2294 4797 4647 * 1817 228 27 18 chr15 21975426 21975865 -63719889 - MER52-int LTR ERV1 -5789 1207 765 206 159 14 43 chr15 21976784 21976853 -63718901 + T-rich Low_complexity Low_complexity 2 68 0 11381 136 24 32 chr15 21976953 21978453 -63717301 + MER61E-int LTR ERV1 2152 3662 -3334 2366 78 3 0 chr15 21978453 21978747 -63717007 + AluY SINE Alu 1 295 -16 11381 136 24 32 chr15 21978747 21979587 -63716167 + MER61E-int LTR ERV1 3662 6995 -1 475 169 0 119 chr15 21979589 21979707 -63716047 + MER61E LTR ERV1 1 104 -465 * 675 157 9 0 chr15 21979694 21979802 -63715952 + LTR25 LTR ERV1 248 356 -438 362 204 8 39 chr15 21979805 21979931 -63715823 + MER61E LTR ERV1 93 189 -380 472 105 9 114 chr15 21979984 21980089 -63715665 + MER61E LTR ERV1 341 434 -135 518 152 9 29 chr15 21980211 21980316 -63715438 + LTR25-int LTR ERV1 627 729 -6267 2463 90 3 0 chr15 21980350 21980660 -63715094 - AluY SINE Alu 0 311 1 414 314 11 29 chr15 21980681 21980856 -63714898 - LTR57-int LTR ERVL -3846 1497 1326 * 568 112 15 199 chr15 21980761 21980957 -63714797 - MER31-int LTR ERV1 -3250 1686 1527 11479 28 5 0 chr15 21981579 21982923 -63712831 - L1PA3 LINE L1 -1559 4587 3237 7216 26 0 0 chr15 21982923 21984370 -63711384 + L1PA3 LINE L1 4560 6006 -149 211 232 18 0 chr15 21984512 21984568 -63711186 + MIR SINE MIR 156 212 -50 679 254 38 42 chr15 21985075 21985311 -63710443 + MIR SINE MIR 24 258 -4 2033 141 3 3 chr15 21985770 21986060 -63709694 + AluJb SINE Alu 1 290 -22 2078 130 31 3 chr15 21986103 21986396 -63709358 + AluSx SINE Alu 1 301 -11 657 114 0 0 chr15 21986446 21986534 -63709220 - AluSg/x SINE Alu -14 296 209 2288 101 7 0 chr15 21987212 21987500 -63708254 + AluSx SINE Alu 1 290 -22 241 274 177 9 chr15 21988159 21988272 -63707482 - L2 LINE L2 -7 3265 3134 183 42 0 0 chr15 21988581 21988605 -63707149 + (TG)n Simple_repeat Simple_repeat 2 25 0 1228 105 139 38 chr15 21988644 21988853 -63706901 + MER30 DNA MER1_type 1 230 0 180 0 0 0 chr15 21988981 21989001 -63706753 + (T)n Simple_repeat Simple_repeat 1 20 0 2285 71 0 14 chr15 21989327 21989623 -63706131 - AluY SINE Alu 0 311 20 199 244 0 0 chr15 21990788 21990833 -63704921 - L2 LINE L2 -18 3295 3251 220 179 0 0 chr15 21992753 21992792 -63702962 + GA-rich Low_complexity Low_complexity 1 39 0 423 231 39 58 chr15 21995166 21995322 -63700432 - MIR3 SINE MIR -26 182 30 1216 171 34 42 chr15 21996681 21996920 -63698834 - AluJo SINE Alu -75 237 1 282 313 57 12 chr15 21997107 21997353 -63698401 - L1ME4a LINE L1 -218 5903 5647 216 264 57 0 chr15 21997646 21997699 -63698055 + MIR SINE MIR 87 142 -66 1883 135 24 3 chr15 21998798 21999095 -63696659 - AluSx SINE Alu -9 303 1 2761 145 53 0 chr15 21999222 21999656 -63696098 - MSTB2 LTR MaLR 0 457 1 287 314 51 8 chr15 22000538 22000656 -63695098 + MIR SINE MIR 69 191 -71 193 281 105 0 chr15 22000744 22000801 -63694953 + MIR3 SINE MIR 125 187 -21 271 203 0 17 chr15 22001125 22001184 -63694570 + L2 LINE L2 3202 3259 -13 1207 105 0 28 chr15 22001630 22001811 -63693943 - AluSg/x SINE Alu 0 310 135 675 273 19 0 chr15 22001933 22002087 -63693667 - MIR SINE MIR -19 243 87 339 146 0 0 chr15 22003018 22003066 -63692688 + Alu SINE Alu 1 48 -252 605 203 0 17 chr15 22003208 22003326 -63692428 + FRAM SINE Alu 1 110 -66 353 207 341 0 chr15 22003392 22003527 -63692227 - MER5A DNA MER1_type 0 189 9 220 226 148 58 chr15 22003947 22004102 -63691652 - L2 LINE L2 -185 3087 2919 22 0 0 0 chr15 22004199 22004221 -63691533 + AT_rich Low_complexity Low_complexity 1 22 0 1525 194 61 0 chr15 22004431 22004709 -63691045 - AluJo SINE Alu -6 296 2 830 155 0 8 chr15 22004721 22004850 -63690904 - FLAM_C SINE Alu -5 128 1 190 343 45 0 chr15 22004914 22004981 -63690773 + L2 LINE L2 3202 3271 -1 780 166 0 29 chr15 22005170 22005309 -63690445 + FLAM_C SINE Alu 2 136 -7 39 24 0 0 chr15 22005573 22005614 -63690140 + AT_rich Low_complexity Low_complexity 1 41 0 22 65 0 0 chr15 22005629 22005660 -63690094 + AT_rich Low_complexity Low_complexity 1 31 0 2221 104 0 0 chr15 22005686 22005993 -63689761 - AluSx SINE Alu -5 307 1 777 210 19 0 chr15 22005993 22006155 -63689599 - L1MC4 LINE L1 -1094 6948 6784 1678 167 3 10 chr15 22006179 22006473 -63689281 - AluJb SINE Alu -20 292 1 328 305 30 8 chr15 22006582 22006713 -63689041 - L1ME LINE L1 -420 5701 5568 219 324 80 6 chr15 22006721 22006897 -63688857 + L2 LINE L2 1885 2073 -1241 23 0 0 0 chr15 22006907 22006930 -63688824 + AT_rich Low_complexity Low_complexity 1 23 0 403 143 29 14 chr15 22006930 22007000 -63688754 - MER66A LTR ERV1 -128 350 280 381 234 0 11 chr15 22007342 22007436 -63688318 + Charlie8 DNA MER1_type 56 148 -2269 2132 104 14 0 chr15 22007439 22007736 -63688018 - AluSx SINE Alu -11 301 1 630 259 80 24 chr15 22008528 22008740 -63687014 + MIR SINE MIR 39 262 0 1764 124 3 109 chr15 22008755 22008891 -63686863 + AluJo SINE Alu 1 85 -217 1740 170 14 0 chr15 22008891 22009180 -63686574 - AluSx SINE Alu -19 293 1 1764 124 3 109 chr15 22009180 22009365 -63686389 + AluJo SINE Alu 85 288 -14 308 102 17 0 chr15 22009645 22009704 -63686050 - L1PA16 LINE L1 0 6166 6107 207 345 0 0 chr15 22009929 22009987 -63685767 - MIR SINE MIR -118 144 87 312 292 8 17 chr15 22010586 22010622 -63685132 + GA-rich Low_complexity Low_complexity 2 37 -83 2311 100 0 0 chr15 22010622 22010933 -63684821 + AluSq SINE Alu 1 311 -2 312 292 8 17 chr15 22010933 22011016 -63684738 + GA-rich Low_complexity Low_complexity 37 120 0 830 203 0 51 chr15 22011053 22011230 -63684524 + FRAM SINE Alu 8 175 -1 286 209 154 11 chr15 22011781 22011872 -63683882 - L2 LINE L2 -1 3312 3209 2244 70 0 7 chr15 22011875 22012173 -63683581 - AluY SINE Alu -15 296 1 1429 267 58 27 chr15 22012173 22012689 -63683065 - L1MC4 LINE L1 -365 7677 7146 2123 107 205 100 chr15 22012689 22013211 -63682543 - MER4A LTR ERV1 0 664 88 458 85 0 0 chr15 22013211 22013270 -63682484 + Alu SINE Alu 1 59 -259 1404 156 0 12 chr15 22013382 22013625 -63682129 + AluJb SINE Alu 64 303 -9 277 139 0 0 chr15 22013625 22013668 -63682086 - MER4A LTR ERV1 -575 89 47 1250 199 70 50 chr15 22013668 22013847 -63681907 - L1MC4 LINE L1 -910 7132 6958 2242 101 0 0 chr15 22013847 22014154 -63681600 - AluSx SINE Alu -5 307 1 1250 199 70 50 chr15 22014154 22014316 -63681438 - L1MC4 LINE L1 -1084 6958 6784 1678 167 3 10 chr15 22014340 22014634 -63681120 - AluJb SINE Alu -20 292 1 328 305 30 8 chr15 22014743 22014874 -63680880 - L1ME LINE L1 -420 5701 5568 219 324 80 6 chr15 22014882 22015058 -63680696 + L2 LINE L2 1885 2073 -1241 23 0 0 0 chr15 22015068 22015091 -63680663 + AT_rich Low_complexity Low_complexity 1 23 0 403 143 29 14 chr15 22015091 22015161 -63680593 - MER66A LTR ERV1 -128 350 280 381 234 0 11 chr15 22015503 22015597 -63680157 + Charlie8 DNA MER1_type 45 137 -2280 762 222 65 15 chr15 22015600 22015861 -63679893 - AluSx SINE Alu -12 300 27 303 247 89 57 chr15 22015967 22016125 -63679629 - L1 LINE L1 -2910 3236 3074 303 119 17 0 chr15 22016329 22016388 -63679366 + L1PA16 LINE L1 6107 6166 0 1244 130 0 11 chr15 22016668 22016853 -63678901 - AluJo SINE Alu -24 288 106 2275 67 0 13 chr15 22016858 22017158 -63678596 + AluY SINE Alu 6 301 -10 315 260 45 65 chr15 22017198 22017352 -63678402 + Charlie8 DNA MER1_type 378 528 -1889 832 185 20 0 chr15 22017364 22017515 -63678239 + FRAM SINE Alu 21 174 -2 23 0 0 0 chr15 22018326 22018349 -63677405 + AT_rich Low_complexity Low_complexity 1 23 0 802 128 30 37 chr15 22018358 22018522 -63677232 + AluSg/x SINE Alu 127 289 -21 2421 49 0 13 chr15 22019037 22019342 -63676412 + AluY SINE Alu 1 301 -10 315 260 45 65 chr15 22019382 22019536 -63676218 + Charlie8 DNA MER1_type 378 528 -1889 805 191 20 0 chr15 22019547 22019694 -63676060 + FRAM SINE Alu 21 170 -6 23 0 0 0 chr15 22020503 22020526 -63675228 + AT_rich Low_complexity Low_complexity 1 23 0 1107 122 17 0 chr15 22020535 22020715 -63675039 + AluSg/x SINE Alu 129 311 -1 669 0 0 0 chr15 22021023 22021095 -63674659 - tRNA-His-CAC tRNA tRNA -3 72 1 214 200 62 154 chr15 22021685 22021815 -63673939 + L2 LINE L2 3146 3263 -9 1581 67 0 10 chr15 22022187 22022395 -63673359 + AluSg/x SINE Alu 99 304 -6 669 0 0 0 chr15 22022813 22022885 -63672869 - tRNA-His-CAC tRNA tRNA -3 72 1 669 0 0 0 chr15 22023551 22023623 -63672131 + tRNA-His-CAC tRNA tRNA 1 72 -3 1951 125 16 3 chr15 22024503 22024806 -63670948 + AluJb SINE Alu 1 307 -5 1913 159 0 0 chr15 22025283 22025579 -63670175 + AluJb SINE Alu 1 296 -16 797 162 0 0 chr15 22026439 22026556 -63669198 + FLAM_C SINE Alu 1 117 -26 785 262 52 26 chr15 22026568 22026801 -63668953 + MIR SINE MIR 3 241 -21 385 273 58 78 chr15 22026822 22027318 -63668436 + MARNA DNA Mariner 9 578 -8 304 267 164 27 chr15 22027366 22027512 -63668242 + MER5A DNA MER1_type 24 189 0 531 138 0 0 chr15 22027855 22027942 -63667812 + (TCCA)n Simple_repeat Simple_repeat 4 90 0 212 51 0 51 chr15 22028471 22028510 -63667244 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 1740 111 0 0 chr15 22028525 22028760 -63666994 - AluSx SINE Alu -77 235 1 848 144 0 0 chr15 22029262 22029394 -63666360 + AluSg/x SINE Alu 170 301 -11 896 126 0 0 chr15 22029500 22029627 -63666127 + AluSx SINE Alu 41 167 -145 191 292 0 0 chr15 22029917 22029965 -63665789 - L2 LINE L2 -575 2739 2692 3028 154 116 21 chr15 22030217 22030311 -63665443 - LTR51 LTR ERV1 0 671 587 2004 147 0 0 chr15 22030311 22030623 -63665131 - AluJo SINE Alu 0 312 1 3028 154 116 21 chr15 22030623 22031139 -63664615 - LTR51 LTR ERV1 -84 587 3 2135 87 40 3 chr15 22031379 22031677 -63664077 + AluY SINE Alu 3 311 0 1268 95 0 0 chr15 22031680 22031848 -63663906 + AluSg/x SINE Alu 126 293 -17 2288 191 10 125 chr15 22032016 22032065 -63663689 + MLT1F1 LTR MaLR 16 69 -498 1042 171 6 0 chr15 22032065 22032229 -63663525 + FAM SINE Alu 1 165 -10 2288 191 10 125 chr15 22032229 22032249 -63663505 + MLT1F1 LTR MaLR 69 90 -477 2073 119 0 3 chr15 22032249 22032552 -63663202 + AluSq SINE Alu 1 302 -11 2288 191 10 125 chr15 22032552 22033007 -63662747 + MLT1F1 LTR MaLR 90 596 29 2093 120 3 10 chr15 22033007 22033308 -63662446 + AluSx SINE Alu 1 299 -13 2288 191 10 125 chr15 22033308 22033325 -63662429 + MLT1F1 LTR MaLR 596 481 -86 2061 102 3 26 chr15 22033325 22033629 -63662125 + AluSx SINE Alu 1 297 -15 2288 191 10 125 chr15 22033629 22033708 -63662046 + MLT1F1 LTR MaLR 480 567 0 406 178 169 17 chr15 22033708 22033826 -63661928 + MLT1F1-int LTR MaLR 1 136 -1235 829 280 29 32 chr15 22033866 22034177 -63661577 + MLT1F1-int LTR MaLR 302 611 -760 823 207 17 17 chr15 22034195 22034369 -63661385 - FRAM SINE Alu -5 171 1 254 313 93 16 chr15 22034578 22034760 -63660994 + MLT1F1-int LTR MaLR 697 892 -479 345 275 83 47 chr15 22035074 22035267 -63660487 + MLT1F1-int LTR MaLR 1129 1328 -43 1228 207 96 32 chr15 22035302 22035582 -63660172 + MLT1F1 LTR MaLR 3 300 -267 2210 102 3 0 chr15 22035620 22035915 -63659839 - AluSp SINE Alu -17 296 1 1800 203 100 48 chr15 22035918 22036089 -63659665 - L1M4 LINE L1 -1141 5005 4844 1659 134 3 96 chr15 22036089 22036432 -63659322 + AluJb SINE Alu 1 311 -1 1800 203 100 48 chr15 22036432 22036871 -63658883 - L1M4 LINE L1 -1302 4844 4363 1632 205 73 9 chr15 22036858 22037283 -63658471 - L1MCa LINE L1 -3294 2921 2470 * 2119 73 10 23 chr15 22037462 22037762 -63657992 + AluSc SINE Alu 1 296 -13 227 200 17 17 chr15 22037826 22037886 -63657868 + (CCG)n Simple_repeat Simple_repeat 2 61 0 21 0 0 0 chr15 22038614 22038635 -63657119 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr15 22038838 22038866 -63656888 + AT_rich Low_complexity Low_complexity 1 28 0 462 181 30 136 chr15 22038866 22038928 -63656826 - L1MCa LINE L1 -3746 2469 2402 1862 110 0 63 chr15 22038928 22039245 -63656509 - AluSx SINE Alu -14 298 2 1612 162 48 0 chr15 22039246 22039518 -63656236 - AluJo SINE Alu -22 290 6 462 181 30 136 chr15 22039518 22039610 -63656144 - L1MCa LINE L1 -3813 2402 2336 1732 137 48 7 chr15 22039610 22039903 -63655851 - AluJo SINE Alu -7 305 1 462 181 30 136 chr15 22039903 22039944 -63655810 - L1MCa LINE L1 -3879 2336 2292 2039 108 0 4 chr15 22039948 22040226 -63655528 + AluSg SINE Alu 1 277 -33 231 61 0 0 chr15 22040226 22040259 -63655495 + (CA)n Simple_repeat Simple_repeat 1 33 0 522 203 198 9 chr15 22040260 22040477 -63655277 - L1MCa LINE L1 -4798 1417 1160 861 131 54 42 chr15 22040477 22040645 -63655109 - AluJb SINE Alu -16 296 127 305 196 0 0 chr15 22040663 22040714 -63655040 + L1MC4 LINE L1 6653 6703 -1339 233 139 0 13 chr15 22040715 22040762 -63654992 - AluJb SINE Alu -170 132 87 304 248 105 85 chr15 22040943 22041096 -63654658 - MIR SINE MIR -28 234 79 2212 99 0 0 chr15 22041155 22041449 -63654305 - AluSx SINE Alu -18 294 1 32 26 0 0 chr15 22041472 22041511 -63654243 + AT_rich Low_complexity Low_complexity 1 39 0 842 141 0 44 chr15 22041511 22041646 -63654108 - FLAM_C SINE Alu -3 130 2 1319 238 181 11 chr15 22041667 22041835 -63653919 - L1MCa LINE L1 -5216 1180 1042 1623 192 3 10 chr15 22041835 22042143 -63653611 - AluJo SINE Alu -6 306 1 1319 238 181 11 chr15 22042143 22042412 -63653342 - L1MCa LINE L1 -5354 1042 820 2022 115 7 0 chr15 22042412 22042700 -63653054 + AluSg SINE Alu 2 291 -19 1319 238 181 11 chr15 22042700 22043054 -63652700 - L1MCa LINE L1 -5576 820 100 631 287 65 70 chr15 22043553 22043922 -63651832 - ERVL LTR ERVL -24 5740 5374 2034 107 0 20 chr15 22043922 22044221 -63651533 - AluSg SINE Alu -17 293 1 631 287 65 70 chr15 22044221 22044464 -63651290 - ERVL LTR ERVL -390 5374 5131 * 1115 245 52 10 chr15 22044454 22044760 -63650994 - ERVL LTR ERVL -1336 4428 4110 652 214 103 0 chr15 22044766 22044911 -63650843 - LTR33 LTR ERVL -357 164 5 258 229 0 33 chr15 22045189 22045250 -63650504 + L2 LINE L2 3254 3312 -1 543 189 95 61 chr15 22045568 22045635 -63650119 + MIR3 SINE MIR 17 80 -128 1137 234 83 61 chr15 22045635 22046092 -63649662 - MLT1C LTR MaLR 0 467 1 543 189 95 61 chr15 22046092 22046172 -63649582 + MIR3 SINE MIR 80 169 -39 1572 201 37 48 chr15 22047971 22048349 -63647405 - MLT1A2 LTR MaLR 0 374 1 2357 86 3 0 chr15 22048488 22048792 -63646962 + AluSg SINE Alu 1 305 -5 5465 79 20 14 chr15 22048883 22049645 -63646109 - MER4E LTR ERV1 0 766 1 1365 180 39 3 chr15 22049655 22049939 -63645815 - AluJo SINE Alu -18 294 1 3305 135 65 2 chr15 22050175 22050671 -63645083 + MER1A DNA MER1_type 1 527 0 2196 118 0 6 chr15 22050736 22051050 -63644704 - AluSx SINE Alu 0 312 1 239 296 120 9 chr15 22051292 22051400 -63644354 - MIR SINE MIR -133 129 10 202 125 42 21 chr15 22051730 22051778 -63643976 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 1103 227 84 28 chr15 22051818 22052139 -63643615 - MER2 DNA MER2_type 0 345 7 360 251 86 56 chr15 22052236 22052437 -63643317 - L1ME LINE L1 -315 5806 5606 422 275 88 47 chr15 22052771 22052942 -63642812 - L1ME4a LINE L1 -9 6112 5935 2005 142 0 3 chr15 22053079 22053390 -63642364 - AluSx SINE Alu -2 310 1 1619 183 14 0 chr15 22053467 22053757 -63641997 - AluJo SINE Alu -18 294 1 395 219 185 8 chr15 22053783 22053902 -63641852 - L1ME4a LINE L1 0 6121 5982 377 263 85 0 chr15 22053903 22054021 -63641733 - L1ME4a LINE L1 -424 5697 5570 337 193 72 72 chr15 22054042 22054125 -63641629 - L1ME4a LINE L1 -298 5823 5741 180 318 16 0 chr15 22054581 22054644 -63641110 + L2 LINE L2 2996 3059 -213 285 306 49 42 chr15 22054696 22054840 -63640914 - L2 LINE L2 -4 3309 3165 628 278 107 9 chr15 22055067 22055283 -63640471 + MIR SINE MIR 20 256 -6 396 357 6 20 chr15 22055381 22055410 -63640344 - MIR3 SINE MIR -22 186 158 1820 113 6 91 chr15 22055410 22055739 -63640015 - AluSx SINE Alu -11 301 1 396 357 6 20 chr15 22055739 22055878 -63639876 - MIR3 SINE MIR -50 158 20 202 204 45 0 chr15 22056368 22056412 -63639342 - MIR SINE MIR -26 236 191 210 308 31 0 chr15 22056444 22056509 -63639245 + MIR SINE MIR 1 67 -195 1389 167 46 4 chr15 22056512 22056752 -63639002 + AluJo SINE Alu 47 296 -16 560 268 119 12 chr15 22056753 22056939 -63638815 + MIR SINE MIR 56 261 -1 275 241 232 54 chr15 22056947 22057188 -63638566 + L2 LINE L2 3026 3309 -4 * 548 271 124 0 chr15 22057183 22057360 -63638394 - MIR SINE MIR -62 200 2 3064 114 45 0 chr15 22057381 22057897 -63637857 + L1MA2 LINE L1 5665 6203 -101 407 286 71 8 chr15 22059412 22059538 -63636216 - MIR3 SINE MIR -65 143 10 1860 201 75 32 chr15 22059666 22060133 -63635621 + L1ME2 LINE L1 5613 6099 -65 692 161 9 9 chr15 22060241 22060353 -63635401 + MER81 DNA DNA 1 112 -2 1102 239 128 21 chr15 22063504 22063926 -63631828 + MER113 DNA MER1_type? 55 521 0 547 221 41 0 chr15 22065400 22065522 -63630232 + L2 LINE L2 3187 3313 0 1876 163 0 3 chr15 22065785 22066091 -63629663 - AluJo SINE Alu -7 305 1 2530 46 0 0 chr15 22066093 22066397 -63629357 - AluY SINE Alu -7 304 1 336 363 56 6 chr15 22068586 22068746 -63627008 - MER91A DNA MER1_type -26 170 3 186 341 91 0 chr15 22068752 22068840 -63626914 - L2 LINE L2 -37 3276 3181 329 329 29 21 chr15 22069149 22069289 -63626465 + L3 LINE CR1 627 767 -810 2145 96 7 7 chr15 22069788 22070098 -63625656 + AluSx SINE Alu 3 312 0 211 266 165 13 chr15 22070392 22070471 -63625283 - L2 LINE L2 -18 3295 3205 2363 88 0 0 chr15 22071900 22072207 -63623547 - AluSx SINE Alu -5 307 1 693 223 4 96 chr15 22072207 22072271 -63623483 - MIR SINE MIR -10 252 184 866 174 73 17 chr15 22072271 22072449 -63623305 - MER5A DNA MER1_type 0 189 2 693 223 4 96 chr15 22072449 22072625 -63623129 - MIR SINE MIR -78 184 33 2202 113 0 22 chr15 22074649 22075006 -63620748 + AluSx SINE Alu 1 350 0 387 289 255 0 chr15 22075658 22075866 -63619888 + MIR SINE MIR 1 261 -1 280 283 114 66 chr15 22079126 22079292 -63616462 + MIR SINE MIR 31 204 -58 348 327 27 0 chr15 22084483 22084593 -63611161 - MIR SINE MIR -56 206 94 681 92 61 0 chr15 22084677 22084775 -63610979 + FLAM_C SINE Alu 17 120 -23 201 349 165 0 chr15 22085617 22085726 -63610028 - MIR SINE MIR -63 145 19 201 290 150 10 chr15 22086571 22086671 -63609083 - MIR SINE MIR -79 129 16 204 125 0 0 chr15 22086680 22086712 -63609042 + (GA)n Simple_repeat Simple_repeat 1 32 0 215 303 15 0 chr15 22088395 22088461 -63607293 + L2 LINE L2 3175 3241 -31 2103 100 0 7 chr15 22088619 22088910 -63606844 - AluSx SINE Alu -23 289 1 1429 173 61 4 chr15 22089502 22089779 -63605975 - AluJo SINE Alu -15 297 5 445 284 9 0 chr15 22090148 22090257 -63605497 - L2 LINE L2 -11 3302 3193 548 249 17 35 chr15 22090995 22091168 -63604586 - MER104 DNA Tc2 -3 177 8 386 293 137 34 chr15 22091275 22091480 -63604274 + MIR SINE MIR 19 244 -18 1881 137 0 11 chr15 22091602 22091906 -63603848 - AluSx SINE Alu 0 301 1 258 292 143 19 chr15 22091923 22092084 -63603670 + MIR3 SINE MIR 21 201 -7 1107 309 124 28 chr15 22092321 22093184 -63602570 + L2 LINE L2 1527 2472 -842 506 332 76 54 chr15 22093302 22093751 -63602003 + L2 LINE L2 2752 3209 -63 23 0 0 0 chr15 22094102 22094125 -63601629 + AT_rich Low_complexity Low_complexity 1 23 0 221 227 0 0 chr15 22095658 22095702 -63600052 + (TG)n Simple_repeat Simple_repeat 2 45 0 371 352 8 8 chr15 22098574 22098702 -63597052 - MIR3 SINE MIR -77 131 4 413 234 8 62 chr15 22098739 22098867 -63596887 + L2 LINE L2 3192 3312 -1 235 302 69 52 chr15 22099174 22099290 -63596464 + L2 LINE L2 3155 3272 0 2241 88 0 38 chr15 22104164 22104484 -63591270 + AluSp SINE Alu 1 308 -5 318 235 62 12 chr15 22104692 22104773 -63590981 - L1MC4 LINE L1 -1342 6700 6616 423 106 0 0 chr15 22105142 22105208 -63590546 + (TG)n Simple_repeat Simple_repeat 1 66 0 530 298 30 18 chr15 22105718 22105886 -63589868 - MIR3 SINE MIR -1 207 38 193 302 0 0 chr15 22106905 22106948 -63588806 - L2 LINE L2 -8 3305 3263 1085 284 28 22 chr15 22107240 22107698 -63588056 + Tigger8 DNA MER2_type 158 618 -48 289 279 0 13 chr15 22107805 22107884 -63587870 + MIR SINE MIR 185 262 0 288 0 0 0 chr15 22108849 22108881 -63586873 + (TG)n Simple_repeat Simple_repeat 2 33 0 2254 98 10 0 chr15 22109545 22109851 -63585903 + AluSp SINE Alu 5 313 0 380 70 0 18 chr15 22109852 22109909 -63585845 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 799 264 63 17 chr15 22110716 22110955 -63584799 + MIR SINE MIR 13 262 0 272 325 39 26 chr15 22111813 22111967 -63583787 + MIR SINE MIR 79 234 -28 2322 95 3 0 chr15 22112732 22113036 -63582718 + AluSx SINE Alu 1 305 -7 476 281 53 12 chr15 22113618 22113813 -63581941 - MIR3 SINE MIR -46 216 5 1065 166 83 45 chr15 22115564 22115829 -63579925 - ORSL DNA AcHobo 0 275 1 197 129 0 0 chr15 22116053 22116084 -63579670 + L2 LINE L2 3241 3271 -1 318 281 98 52 chr15 22116623 22116665 -63579089 - L1MC4 LINE L1 -2 8040 8001 1843 140 17 14 chr15 22116665 22116957 -63578797 + AluSx SINE Alu 1 293 -19 318 281 98 52 chr15 22116957 22117067 -63578687 - L1MC4 LINE L1 -41 8001 7881 250 236 45 11 chr15 22117275 22117364 -63578390 - L1MC5 LINE L1 -34 7927 7836 667 253 78 0 chr15 22117874 22118028 -63577726 - MER91A DNA MER1_type 0 196 31 451 258 70 128 chr15 22118383 22118712 -63577042 - L2 LINE L2 0 3272 2963 2388 84 3 0 chr15 22120039 22120347 -63575407 + AluSx SINE Alu 1 309 -3 477 0 0 0 chr15 22120594 22120647 -63575107 + (TG)n Simple_repeat Simple_repeat 2 54 0 1238 121 0 0 chr15 22120836 22121010 -63574744 + AluSg/x SINE Alu 133 306 -6 368 351 26 16 chr15 22122216 22122382 -63573372 - L2 LINE L2 0 3313 3143 2124 121 0 16 chr15 22122382 22122689 -63573065 + AluSx SINE Alu 1 302 -10 368 351 26 16 chr15 22122689 22122713 -63573041 - L2 LINE L2 -170 3143 3121 2351 87 0 0 chr15 22123531 22123830 -63571924 - AluSg SINE Alu -11 299 1 2038 151 3 0 chr15 22124637 22124948 -63570806 + AluSx SINE Alu 1 312 0 225 302 103 9 chr15 22125381 22125497 -63570257 + L3b LINE CR1 1111 1237 -346 2062 109 30 7 chr15 22125526 22125830 -63569924 + AluSx SINE Alu 1 311 -1 579 305 180 6 chr15 22126836 22126972 -63568782 - L2 LINE L2 -16 3297 3186 2055 117 10 17 chr15 22126972 22127272 -63568482 + AluSx SINE Alu 1 298 -14 579 305 180 6 chr15 22127272 22127496 -63568258 - L2 LINE L2 -127 3186 2874 388 331 37 37 chr15 22127530 22127775 -63567979 - L2 LINE L2 -550 2764 2520 2261 87 6 22 chr15 22128231 22128543 -63567211 + AluSc SINE Alu 1 307 -2 284 118 0 20 chr15 22128543 22128594 -63567160 + (GGGA)n Simple_repeat Simple_repeat 2 51 0 1122 183 17 26 chr15 22131556 22131786 -63563968 - AluJo SINE Alu -9 303 76 272 197 182 0 chr15 22133117 22133183 -63562571 + MIR3 SINE MIR 93 170 -38 2364 45 10 3 chr15 22133234 22133525 -63562229 - AluSp SINE Alu -19 294 2 41 66 0 0 chr15 22134183 22134259 -63561495 + GC_rich Low_complexity Low_complexity 1 76 0 336 304 32 8 chr15 22137268 22137393 -63558361 + MIR SINE MIR 20 147 -115 523 294 71 5 chr15 22137553 22137728 -63558026 - MIR3 SINE MIR -7 201 12 2175 123 0 3 chr15 22137728 22138037 -63557717 - AluSq SINE Alu -1 312 5 454 205 224 32 chr15 22138592 22138748 -63557006 - MIR SINE MIR 0 262 77 289 273 52 0 chr15 22138783 22138860 -63556894 + L2 LINE L2 3138 3218 -54 252 168 42 76 chr15 22140826 22140945 -63554809 + (CAGAGA)n Simple_repeat Simple_repeat 3 117 0 2307 96 3 6 chr15 22142895 22143208 -63552546 - AluSx SINE Alu 0 312 1 2391 84 0 3 chr15 22145611 22145921 -63549833 - AluSc SINE Alu 0 309 1 419 244 59 0 chr15 22146017 22146152 -63549602 - LTR33A LTR ERVL -6 517 375 452 257 81 15 chr15 22146256 22146392 -63549362 - MIR SINE MIR -78 184 40 216 273 45 0 chr15 22147242 22147308 -63548446 + L2 LINE L2 3230 3298 -15 295 337 203 10 chr15 22147628 22147919 -63547835 + L2 LINE L2 2845 3191 -81 272 257 43 0 chr15 22148624 22148694 -63547060 + L2 LINE L2 3225 3297 -16 194 0 39 0 chr15 22148934 22148960 -63546794 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 507 237 46 53 chr15 22149405 22149557 -63546197 + MIR SINE MIR 106 256 -6 275 337 32 0 chr15 22149583 22149678 -63546076 - MIR SINE MIR -83 125 28 460 191 106 14 chr15 22149691 22149832 -63545922 - MER103 DNA DNA -10 156 3 249 264 14 28 chr15 22150202 22150274 -63545480 - L2 LINE L2 -2 3311 3241 709 303 10 15 chr15 22150286 22150484 -63545270 + MIR SINE MIR 65 261 -1 333 294 101 0 chr15 22152937 22153046 -63542708 - L2 LINE L2 -7 3265 3146 222 260 0 0 chr15 22154052 22154102 -63541652 + GA-rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr15 22154586 22154608 -63541146 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr15 22154767 22154795 -63540959 + GC_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr15 22154850 22154871 -63540883 + GC_rich Low_complexity Low_complexity 1 21 0 32 57 0 0 chr15 22154925 22154978 -63540776 + GC_rich Low_complexity Low_complexity 1 53 0 231 88 0 0 chr15 22155082 22155116 -63540638 + (CGGGGG)n Simple_repeat Simple_repeat 2 35 0 2246 87 0 3 chr15 22156000 22156309 -63539445 + AluY SINE Alu 1 308 -3 907 304 69 33 chr15 22156314 22156574 -63539180 - ERVL LTR ERVL -2909 2855 2571 1074 218 9 13 chr15 22156574 22156799 -63538955 + MER58A DNA MER1_type 1 224 0 907 304 69 33 chr15 22156799 22156988 -63538766 - ERVL LTR ERVL -3193 2571 2390 747 223 20 0 chr15 22157067 22157215 -63538539 - AluJb SINE Alu -15 297 147 21 0 0 0 chr15 22157233 22157254 -63538500 + GC_rich Low_complexity Low_complexity 1 21 0 32 57 0 0 chr15 22157308 22157361 -63538393 + GC_rich Low_complexity Low_complexity 1 53 0 654 304 24 34 chr15 22157979 22158028 -63537726 - ERVL LTR ERVL -344 5420 5372 2026 107 0 20 chr15 22158028 22158326 -63537428 - AluSg SINE Alu -18 292 1 654 304 24 34 chr15 22158326 22158569 -63537185 - ERVL LTR ERVL -392 5372 5131 * 1115 245 52 10 chr15 22158559 22158865 -63536889 - ERVL LTR ERVL -1336 4428 4110 652 214 103 0 chr15 22158871 22159016 -63536738 - LTR33 LTR ERVL -357 164 5 258 229 0 33 chr15 22159294 22159355 -63536399 + L2 LINE L2 3254 3312 -1 538 212 86 60 chr15 22159673 22159743 -63536011 + MIR3 SINE MIR 15 82 -126 1156 233 83 59 chr15 22159743 22160199 -63535555 - MLT1C LTR MaLR 0 467 1 538 212 86 60 chr15 22160199 22160279 -63535475 + MIR3 SINE MIR 82 169 -39 1474 201 37 48 chr15 22162073 22162451 -63533303 - MLT1A2 LTR MaLR 0 374 1 2324 89 3 0 chr15 22162590 22162893 -63532861 + AluSg SINE Alu 1 304 -6 5368 79 20 14 chr15 22162984 22163746 -63532008 - MER4E LTR ERV1 0 766 1 1755 164 14 0 chr15 22163756 22164048 -63531706 - AluJo SINE Alu -16 296 1 3232 135 65 2 chr15 22164284 22164780 -63530974 + MER1A DNA MER1_type 1 527 0 2175 118 0 6 chr15 22164837 22165151 -63530603 - AluSx SINE Alu 0 312 1 241 135 0 39 chr15 22165994 22166046 -63529708 - L1PA16 LINE L1 -10 6156 6107 207 345 0 0 chr15 22166274 22166332 -63529422 - MIR SINE MIR -118 144 87 219 69 0 0 chr15 22166388 22166417 -63529337 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 296 300 8 17 chr15 22166941 22166977 -63528777 + GA-rich Low_complexity Low_complexity 2 37 -83 2268 104 0 0 chr15 22166977 22167286 -63528468 + AluSq SINE Alu 1 309 -4 296 300 8 17 chr15 22167286 22167369 -63528385 + GA-rich Low_complexity Low_complexity 37 120 0 741 201 0 67 chr15 22167406 22167591 -63528163 + FRAM SINE Alu 8 176 0 22 0 0 0 chr15 22167999 22168021 -63527733 + AT_rich Low_complexity Low_complexity 1 22 0 1784 133 10 39 chr15 22168149 22168458 -63527296 - AluJo SINE Alu -4 308 9 191 304 7 74 chr15 22168640 22168775 -63526979 - L2 LINE L2 -200 3072 2947 180 0 0 0 chr15 22169669 22169689 -63526065 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1545 101 0 5 chr15 22169692 22169900 -63525854 - AluSg/x SINE Alu -25 287 81 4841 67 2 0 chr15 22169900 22170486 -63525268 - LTR14C LTR ERVK 0 587 1 40483 71 3 9 chr15 22170486 22175711 -63520043 - HERVK14C LTR ERVK 0 7417 2223 16512 110 11 4 chr15 22175817 22178168 -63517586 - HERVK14C LTR ERVK -3777 2348 47 664 143 15 45 chr15 22178168 22178214 -63517540 - AluSq/x SINE Alu -183 129 83 4908 55 2 2 chr15 22178214 22178801 -63516953 - LTR14C LTR ERVK 0 587 1 664 143 15 45 chr15 22178801 22178887 -63516867 - AluSq/x SINE Alu -229 83 1 542 233 73 52 chr15 22178924 22179007 -63516747 + L1MEc LINE L1 954 1034 -5171 1867 160 13 3 chr15 22179007 22179314 -63516440 + AluSx SINE Alu 1 310 -2 542 233 73 52 chr15 22179314 22179518 -63516236 + L1MEc LINE L1 1034 1223 -4982 416 236 43 32 chr15 22179538 22179667 -63516087 - AluJo SINE Alu -87 215 123 474 231 0 72 chr15 22179668 22179782 -63515972 - L1MCa LINE L1 -5327 1614 1518 2022 147 0 6 chr15 22179782 22180096 -63515658 - AluSx SINE Alu 0 312 1 474 231 0 72 chr15 22180096 22180176 -63515578 - L1MCa LINE L1 -5423 1518 1434 1008 151 0 58 chr15 22180184 22180356 -63515398 - Tigger2a DNA MER2_type -272 162 1 1819 117 3 56 chr15 22180500 22180824 -63514930 + AluSx SINE Alu 1 307 -5 976 254 181 55 chr15 22180904 22181078 -63514676 - L1MCa LINE L1 -5006 1417 1266 2504 113 52 54 chr15 22181078 22181450 -63514304 - MSTA LTR MaLR 0 428 56 1528 109 125 12 chr15 22181450 22181706 -63514048 - AluSg1 SINE Alu -24 285 1 2504 113 52 54 chr15 22181706 22181759 -63513995 - MSTA LTR MaLR -372 56 4 1520 201 0 29 chr15 22181763 22182077 -63513677 - AluJo SINE Alu -7 305 1 976 254 181 55 chr15 22182077 22182428 -63513326 - L1MCa LINE L1 -5159 1264 820 388 317 42 30 chr15 22182559 22182726 -63513028 - L1MCa LINE L1 -5842 581 413 273 46 0 127 chr15 22182915 22182978 -63512776 + FLAM_A SINE Alu 86 133 0 1083 147 6 0 chr15 22183123 22183293 -63512461 + AluJb SINE Alu 138 308 -4 2076 113 3 0 chr15 22183333 22183624 -63512130 - AluSx SINE Alu -20 292 1 2067 136 0 3 chr15 22183639 22183949 -63511805 - AluSx SINE Alu -3 309 1 403 217 35 99 chr15 22184075 22184092 -63511662 - L1ME LINE L1 -5905 300 283 1465 127 163 0 chr15 22184092 22184344 -63511410 - AluJo SINE Alu -9 293 1 403 217 35 99 chr15 22184344 22184522 -63511232 - L1ME LINE L1 -5922 283 56 278 284 46 46 chr15 22184729 22184838 -63510916 + MIR SINE MIR 45 153 -55 310 300 125 8 chr15 22184960 22185080 -63510674 + MIR SINE MIR 18 151 -57 1578 168 3 17 chr15 22185442 22185733 -63510021 + AluJo SINE Alu 5 291 -21 287 220 46 0 chr15 22185802 22185911 -63509843 + (TA)n Simple_repeat Simple_repeat 1 114 0 266 297 93 8 chr15 22186069 22186187 -63509567 - MIR SINE MIR -42 220 93 346 250 44 96 chr15 22186353 22186445 -63509309 - L2 LINE L2 -1 3271 3187 1773 160 0 16 chr15 22186445 22186751 -63509003 + AluJo SINE Alu 1 301 -11 346 250 44 96 chr15 22186751 22186794 -63508960 - L2 LINE L2 -85 3187 3143 402 348 76 27 chr15 22186879 22186949 -63508805 + L2 LINE L2 3038 3103 -169 2049 123 13 0 chr15 22186949 22187251 -63508503 - AluSx SINE Alu -6 306 1 402 348 76 27 chr15 22187251 22187404 -63508350 + L2 LINE L2 3103 3272 0 1580 142 50 4 chr15 22187609 22187890 -63507864 - AluJb SINE Alu -8 304 11 27 29 0 0 chr15 22188851 22188885 -63506869 + AT_rich Low_complexity Low_complexity 1 34 0 274 259 0 47 chr15 22190268 22190353 -63505401 - AluJ/FLAM SINE Alu -209 93 13 2032 95 37 17 chr15 22190444 22190740 -63505014 - AluSx SINE Alu -10 302 1 227 370 31 59 chr15 22191007 22191261 -63504493 + L2 LINE L2 2807 3053 -219 219 353 65 13 chr15 22191348 22191501 -63504253 + L2 LINE L2 3119 3279 -34 314 300 106 28 chr15 22191688 22191868 -63503886 - L1 LINE L1 -1152 4994 4801 1987 116 14 0 chr15 22191971 22192255 -63503499 + AluSq SINE Alu 1 288 -25 32 67 0 0 chr15 22192255 22192315 -63503439 + AT_rich Low_complexity Low_complexity 1 60 0 2507 205 116 36 chr15 22192377 22193177 -63502577 - L1ME3A LINE L1 -10 6160 5291 725 186 44 11 chr15 22193182 22193365 -63502389 + L1MA8 LINE L1 6093 6281 -10 848 152 0 0 chr15 22193368 22193500 -63502254 - AluJb SINE Alu -180 132 1 298 228 18 0 chr15 22193641 22193698 -63502056 - L2 LINE L2 0 3272 3215 281 339 141 6 chr15 22193714 22193891 -63501863 - L2 LINE L2 -33 3280 3080 443 289 20 41 chr15 22194013 22194210 -63501544 - LTR33 LTR ERVL -3 518 326 395 304 72 22 chr15 22194244 22194425 -63501329 - LTR33 LTR ERVL -328 193 4 1463 128 0 43 chr15 22194566 22194801 -63500953 + AluJo SINE Alu 58 282 -30 198 71 0 0 chr15 22194809 22194837 -63500917 + (CAAAG)n Simple_repeat Simple_repeat 3 30 0 829 267 58 0 chr15 22195282 22195522 -63500232 + MIR SINE MIR 4 257 -5 362 226 23 140 chr15 22198236 22198457 -63497297 - MER112 DNA MER1_type 0 260 66 493 306 6 35 chr15 22199940 22200110 -63495644 + MIR3 SINE MIR 44 208 0 333 300 55 9 chr15 22200846 22200956 -63494798 + L2 LINE L2 3181 3295 -18 2092 21 0 4 chr15 22202482 22202720 -63493034 + L1P1 LINE L1 5422 5658 -497 1854 134 13 43 chr15 22204213 22204535 -63491219 - AluSx SINE Alu 0 313 1 860 111 8 0 chr15 22204932 22205049 -63490705 + FLAM_C SINE Alu 1 118 -25 21 0 0 0 chr15 22205049 22205070 -63490684 + AT_rich Low_complexity Low_complexity 1 21 0 198 318 83 59 chr15 22205542 22205831 -63489923 - L2 LINE L2 -670 2644 2349 846 148 0 16 chr15 22205849 22205977 -63489777 - FLAM_C SINE Alu -17 126 1 229 358 81 0 chr15 22205979 22206102 -63489652 - L2 LINE L2 -955 2359 2227 1593 151 54 12 chr15 22206103 22206223 -63489531 + AluJb SINE Alu 1 114 -198 225 0 0 0 chr15 22206223 22206248 -63489506 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1593 151 54 12 chr15 22206248 22206386 -63489368 + AluJb SINE Alu 114 270 -42 195 42 0 0 chr15 22206386 22206410 -63489344 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 983 154 108 26 chr15 22206628 22206823 -63488931 - AluJb SINE Alu -9 303 93 358 159 43 0 chr15 22207551 22207620 -63488134 + AluS SINE Alu 1 72 -227 2033 109 7 7 chr15 22209220 22209495 -63486259 + AluSg SINE Alu 2 276 -34 21 0 0 0 chr15 22209513 22209534 -63486220 + AT_rich Low_complexity Low_complexity 1 21 0 326 348 18 18 chr15 22209810 22210031 -63485723 - MER58A DNA MER1_type 0 224 4 2256 103 7 0 chr15 22210310 22210602 -63485152 - AluSx SINE Alu -16 296 3 317 143 0 0 chr15 22211073 22211122 -63484632 + AluSp SINE Alu 100 148 -155 278 323 10 10 chr15 22211152 22211251 -63484503 + L2 LINE L2 2262 2360 -954 836 186 256 12 chr15 22211371 22211613 -63484141 - AluJo SINE Alu -10 302 2 289 287 9 26 chr15 22211789 22211904 -63483850 + L2 LINE L2 2660 2772 -542 1851 97 120 0 chr15 22212325 22212592 -63483162 + AluSc SINE Alu 1 299 0 2212 117 0 0 chr15 22212922 22213222 -63482532 - AluSq SINE Alu -13 300 1 423 0 0 0 chr15 22213247 22213294 -63482460 + (TG)n Simple_repeat Simple_repeat 1 47 0 2221 100 0 10 chr15 22213294 22213575 -63482179 - AluSp SINE Alu -33 280 1 952 116 55 22 chr15 22213745 22213926 -63481828 + MER53 DNA DNA 3 189 0 500 250 17 10 chr15 22214039 22214175 -63481579 + MIR SINE MIR 7 142 -66 7804 44 1 33 chr15 22214849 22216440 -63479314 - SVA Other Other -799 1383 1 246 194 0 32 chr15 22216440 22216502 -63479252 + GA-rich Low_complexity Low_complexity 2 61 0 585 121 0 0 chr15 22216505 22216588 -63479166 - AluSg/x SINE Alu -15 297 215 2308 116 3 0 chr15 22218001 22218311 -63477443 - AluSp SINE Alu -2 311 1 34 65 0 0 chr15 22218337 22218399 -63477355 + AT_rich Low_complexity Low_complexity 1 62 0 2157 186 47 2 chr15 22218434 22218838 -63476916 - MSTB LTR MaLR -4 422 1 579 202 21 101 chr15 22219030 22219065 -63476689 + MIR SINE MIR 11 47 -215 2544 85 11 8 chr15 22219065 22219419 -63476335 + THE1A LTR MaLR 1 355 0 11892 83 2 31 chr15 22219419 22219914 -63475840 + THE1A-int LTR MaLR 1 509 -1071 2239 121 7 0 chr15 22219914 22220220 -63475534 + AluSx SINE Alu 1 308 -4 11892 83 2 31 chr15 22220220 22221026 -63474728 + THE1A-int LTR MaLR 509 1248 -332 2316 112 0 7 chr15 22221026 22221331 -63474423 - AluSq SINE Alu -10 303 1 11892 83 2 31 chr15 22221331 22221655 -63474099 + THE1A-int LTR MaLR 1248 1580 0 2259 133 8 8 chr15 22221655 22222009 -63473745 + THE1A LTR MaLR 1 354 -1 579 202 21 101 chr15 22222009 22222159 -63473595 + MIR SINE MIR 44 183 -79 183 42 0 0 chr15 22222350 22222374 -63473380 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 1051 155 7 0 chr15 22222374 22222529 -63473225 - AluJb SINE Alu -23 289 134 1659 165 10 30 chr15 22222529 22222832 -63472922 - AluJo SINE Alu -15 297 1 288 305 210 0 chr15 22222901 22223101 -63472653 - MIR SINE MIR -6 256 15 4576 188 18 23 chr15 22223993 22224034 -63471720 - L1MB5 LINE L1 0 6174 6134 1797 164 25 0 chr15 22224034 22224320 -63471434 - AluJb SINE Alu -19 293 1 4576 188 18 23 chr15 22224320 22224965 -63470789 - L1MB5 LINE L1 -40 6134 5488 207 0 0 0 chr15 22224965 22224988 -63470766 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4576 188 18 23 chr15 22224988 22225265 -63470489 - L1MB5 LINE L1 -686 5488 5211 983 154 108 26 chr15 22225582 22225777 -63469977 - AluJb SINE Alu -9 303 93 2605 50 0 0 chr15 22226494 22226796 -63468958 + AluY SINE Alu 1 302 -9 3519 39 0 0 chr15 22226924 22227334 -63468420 + L1PA3 LINE L1 5746 6155 0 185 105 0 26 chr15 22227377 22227415 -63468339 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 900 236 36 19 chr15 22227805 22228024 -63467730 + MER20 DNA MER1_type 1 219 0 47 19 0 0 chr15 22228028 22228082 -63467672 + AT_rich Low_complexity Low_complexity 1 54 0 3010 159 55 2 chr15 22228114 22228673 -63467081 + L1MB5 LINE L1 5586 6174 0 1216 14 28 0 chr15 22228689 22228830 -63466924 + AluYa5/8 SINE Alu 166 310 -1 565 307 24 6 chr15 22229036 22229202 -63466552 + MIR SINE MIR 2 170 -92 2167 150 105 0 chr15 22229233 22229613 -63466141 - MSTC LTR MaLR -8 420 1 1127 158 66 0 chr15 22230565 22230761 -63464993 - AluJb SINE Alu -6 306 98 1579 216 11 20 chr15 22230761 22231117 -63464637 + MLT1A1 LTR MaLR 13 365 0 1755 151 75 0 chr15 22231419 22231697 -63464057 - AluJb SINE Alu -13 299 1 303 230 184 0 chr15 22232786 22232873 -63462881 - MIR SINE MIR 0 262 160 498 297 69 48 chr15 22233382 22233800 -63461954 + HERV16 LTR ERVL 1 427 -4569 1696 45 0 27 chr15 22233810 22234034 -63461720 + L1PA5 LINE L1 5937 6154 0 2053 148 7 0 chr15 22234044 22234354 -63461400 + AluSq SINE Alu 1 312 -1 341 109 125 0 chr15 22234520 22234584 -63461170 + MER5A DNA MER1_type 35 106 -83 1689 125 62 18 chr15 22234607 22234902 -63460852 + AluJb SINE Alu 1 307 0 5472 55 38 30 chr15 22235252 22235817 -63459937 + MER4E LTR ERV1 1 575 -191 2359 109 0 0 chr15 22235817 22236128 -63459626 - AluSx SINE Alu -1 311 1 5472 55 38 30 chr15 22236128 22236322 -63459432 + MER4E LTR ERV1 575 766 0 2191 312 55 87 chr15 22236554 22237664 -63458090 + HERV16 LTR ERVL 1266 2410 -3354 1848 154 11 0 chr15 22237664 22237943 -63457811 + AluJo SINE Alu 14 295 -17 2191 312 55 87 chr15 22237943 22238213 -63457541 + HERV16 LTR ERVL 2410 2588 -3176 1080 218 9 13 chr15 22238213 22238438 -63457316 - MER58A DNA MER1_type 0 224 1 2191 312 55 87 chr15 22238438 22238698 -63457056 + HERV16 LTR ERVL 2588 2855 -2909 2252 112 7 0 chr15 22238703 22239006 -63456748 - AluSx SINE Alu -5 307 3 303 163 0 0 chr15 22239475 22239524 -63456230 + AluSp SINE Alu 100 148 -155 278 323 10 10 chr15 22239554 22239653 -63456101 + L2 LINE L2 2262 2360 -954 831 181 255 12 chr15 22239773 22240016 -63455738 - AluJo SINE Alu -9 303 2 220 308 142 33 chr15 22240097 22240308 -63455446 + L2 LINE L2 2539 2772 -542 327 143 0 0 chr15 22240521 22240570 -63455184 - Tigger2 DNA MER2_type -2669 49 1 2221 92 3 41 chr15 22241063 22241380 -63454374 - AluSx SINE Alu -7 305 1 1240 227 32 35 chr15 22241882 22242120 -63453634 + MER2 DNA MER2_type 1 239 -105 1877 138 10 20 chr15 22242120 22242416 -63453338 - AluSx SINE Alu -19 293 1 1240 227 32 35 chr15 22242416 22242521 -63453233 + MER2 DNA MER2_type 239 343 -1 2093 210 107 51 chr15 22243277 22243988 -63451766 + L1MC4 LINE L1 7292 8042 0 191 36 36 0 chr15 22244113 22244141 -63451613 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 2267 112 7 0 chr15 22244445 22244748 -63451006 - AluSq SINE Alu -8 305 1 1520 245 80 53 chr15 22245072 22245433 -63450321 + L1ME3A LINE L1 5601 5984 -186 1594 138 100 38 chr15 22245433 22245724 -63450030 - AluJb SINE Alu -3 309 1 1520 245 80 53 chr15 22245724 22245913 -63449841 + L1ME3A LINE L1 5984 6166 -4 1537 183 3 55 chr15 22245980 22246292 -63449462 - AluJb SINE Alu -16 296 1 380 343 39 24 chr15 22246334 22246541 -63449213 + L2 LINE L2 2901 3110 -162 180 274 255 0 chr15 22246616 22246718 -63449036 + L2 LINE L2 3144 3271 -1 2321 106 3 3 chr15 22247094 22247396 -63448358 - AluSx SINE Alu -10 302 1 3091 186 4 30 chr15 22247432 22248109 -63447645 - L1M4 LINE L1 -1144 5002 4343 1767 169 7 13 chr15 22248345 22248653 -63447101 - AluJo SINE Alu -6 306 1 469 310 98 12 chr15 22249138 22249641 -63446113 + HAL1 LINE L1 1 696 -1811 837 174 0 6 chr15 22249709 22249883 -63445871 - L1MB1 LINE L1 -2 6166 6020 579 206 83 122 chr15 22249902 22250198 -63445556 + HAL1 LINE L1 844 1106 -1401 1181 170 72 138 chr15 22250198 22250464 -63445290 + MER110A LTR ERV1 1 220 -248 2147 130 0 7 chr15 22250464 22250772 -63444982 - AluJo SINE Alu -5 307 2 1181 170 72 138 chr15 22250772 22251006 -63444748 + MER110A LTR ERV1 220 468 0 579 206 83 122 chr15 22251006 22251306 -63444448 + HAL1 LINE L1 1106 1416 -1091 453 215 46 39 chr15 22251716 22251846 -63443908 - L2 LINE L2 -1 3312 3182 402 176 0 0 chr15 22251860 22251945 -63443809 + (CATA)n Simple_repeat Simple_repeat 4 88 0 775 256 36 52 chr15 22252034 22252343 -63443411 - L2 LINE L2 -658 2656 2353 2237 106 0 7 chr15 22252344 22252645 -63443109 + AluSx SINE Alu 1 299 -13 1656 173 7 7 chr15 22252924 22253202 -63442552 + AluJo SINE Alu 14 291 -21 356 143 57 0 chr15 22253980 22254050 -63441704 - L1MA9 LINE L1 -87 6225 6152 1916 140 0 51 chr15 22254262 22254577 -63441177 + AluSx SINE Alu 1 299 -13 330 297 31 46 chr15 22255237 22255374 -63440380 + L1 LINE L1 4138 4272 -1874 2135 95 0 60 chr15 22255374 22255690 -63440064 + AluY SINE Alu 1 297 -14 330 297 31 46 chr15 22255690 22255780 -63439974 + L1 LINE L1 4272 4362 -1784 1691 103 140 85 chr15 22255898 22256037 -63439717 + MSTA LTR MaLR 32 162 -266 6858 61 28 9 chr15 22256037 22257092 -63438662 + L1PA8 LINE L1 5100 6171 -1 1691 103 140 85 chr15 22257092 22257281 -63438473 + MSTA LTR MaLR 162 378 -50 594 214 16 115 chr15 22257487 22257575 -63438179 + MLT1F1 LTR MaLR 7 69 -473 844 158 32 37 chr15 22257575 22257765 -63437989 - MER53 DNA DNA 0 189 1 594 214 16 115 chr15 22257765 22257858 -63437896 + MLT1F1 LTR MaLR 69 170 -372 4708 127 69 120 chr15 22257936 22259214 -63436540 + pTR5 LTR ERV1 6 581 -133 1729 197 64 12 chr15 22259214 22259559 -63436195 + MLT1F1 LTR MaLR 205 567 0 2008 118 7 0 chr15 22259756 22260086 -63435668 - AluSx SINE Alu 0 332 1 3159 200 48 17 chr15 22260103 22260745 -63435009 - L1MA9 LINE L1 -38 6274 5604 1897 150 3 7 chr15 22260745 22261039 -63434715 - AluJb SINE Alu -19 293 1 3159 200 48 17 chr15 22261039 22261141 -63434613 - L1MA9 LINE L1 -708 5604 5507 931 125 0 0 chr15 22261221 22261341 -63434413 - AluSq/x SINE Alu -192 120 1 21 57 0 0 chr15 22261612 22261647 -63434107 + AT_rich Low_complexity Low_complexity 1 35 0 360 239 182 45 chr15 22261870 22262117 -63433637 - L1ME4a LINE L1 -135 5986 5706 7256 54 0 7 chr15 22262288 22263351 -63432403 + L1PA6 LINE L1 5093 6149 -5 2302 149 65 173 chr15 22263960 22264098 -63431656 + LTR8A LTR ERV1 1 152 -575 1901 160 3 14 chr15 22264098 22264411 -63431343 - AluJo SINE Alu 0 312 1 2302 149 65 173 chr15 22264411 22265078 -63430676 + LTR8A LTR ERV1 152 719 -8 2126 140 0 0 chr15 22265551 22265844 -63429910 - AluSx SINE Alu -19 293 1 557 273 99 65 chr15 22265891 22266415 -63429339 - MER34 LTR ERV1 0 542 1 186 100 0 60 chr15 22266613 22266663 -63429091 + (TA)n Simple_repeat Simple_repeat 1 47 0 207 114 0 0 chr15 22266663 22266698 -63429056 + (TC)n Simple_repeat Simple_repeat 1 35 0 235 148 37 19 chr15 22266707 22266761 -63428993 + (TA)n Simple_repeat Simple_repeat 2 56 0 4507 186 18 42 chr15 22266935 22267650 -63428104 + L1MB5 LINE L1 4343 5073 -1101 2130 117 3 26 chr15 22267650 22267958 -63427796 + AluSq SINE Alu 1 301 -12 4507 186 18 42 chr15 22267958 22268436 -63427318 + L1MB5 LINE L1 5073 5561 -613 207 0 0 0 chr15 22268436 22268459 -63427295 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4507 186 18 42 chr15 22268459 22269103 -63426651 + L1MB5 LINE L1 5561 6134 -40 1732 178 25 0 chr15 22269103 22269389 -63426365 + AluJb SINE Alu 1 293 -19 4507 186 18 42 chr15 22269389 22269430 -63426324 + L1MB5 LINE L1 6134 6174 0 271 318 176 0 chr15 22270315 22270485 -63425269 + MIR SINE MIR 15 214 -48 1683 162 10 30 chr15 22270584 22270887 -63424867 + AluJo SINE Alu 1 297 -15 1069 153 6 0 chr15 22270887 22271044 -63424710 + AluJb SINE Alu 134 291 -21 183 42 0 0 chr15 22271044 22271068 -63424686 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 503 218 28 63 chr15 22271259 22271401 -63424353 - MIR SINE MIR -79 183 47 845 212 24 14 chr15 22271408 22271620 -63424134 - THE1A LTR MaLR -1 354 141 1010 179 0 0 chr15 22271789 22271990 -63423764 + AluSp SINE Alu 141 313 0 2566 73 0 3 chr15 22272204 22272534 -63423220 + MER41A LTR ERV1 1 329 -225 995 115 0 7 chr15 22272535 22272674 -63423080 + AluSq/x SINE Alu 2 139 -173 226 188 0 0 chr15 22272676 22272724 -63423030 + Alu SINE Alu 253 300 0 * 1855 79 4 0 chr15 22272719 22272959 -63422795 + MER41A LTR ERV1 314 554 0 364 324 29 22 chr15 22273374 22273513 -63422241 + MIR SINE MIR 1 140 -122 317 111 0 0 chr15 22273516 22273561 -63422193 + MER4D LTR ERV1 782 826 -77 974 252 4 46 chr15 22273591 22273853 -63421901 - MIR SINE MIR 0 262 12 211 316 13 0 chr15 22273851 22273927 -63421827 + MIR SINE MIR 156 232 -30 * 2139 112 3 25 chr15 22273966 22274141 -63421613 - AluSx SINE Alu -5 307 141 2253 116 0 0 chr15 22274141 22274442 -63421312 - AluSg SINE Alu -9 301 1 2139 112 3 25 chr15 22274442 22274580 -63421174 - AluSx SINE Alu -171 141 1 796 103 7 97 chr15 22274789 22274934 -63420820 + FLAM_C SINE Alu 1 132 -1 2482 194 88 11 chr15 22275277 22275802 -63419952 - MLT1F1 LTR MaLR -2 565 1 2498 52 0 0 chr15 22276508 22276799 -63418955 + AluY SINE Alu 1 291 -20 2066 143 0 13 chr15 22277050 22277186 -63418568 + AluSx SINE Alu 1 137 -175 2234 92 0 10 chr15 22277186 22277515 -63418239 + AluSq SINE Alu 1 313 0 2066 143 0 13 chr15 22277515 22277685 -63418069 + AluSx SINE Alu 137 303 -9 1959 142 0 19 chr15 22277776 22278085 -63417669 + AluJb SINE Alu 1 303 -9 545 184 0 18 chr15 22278108 22278217 -63417537 - AluJo SINE Alu -1 311 205 783 183 0 0 chr15 22278230 22278356 -63417398 - AluJo SINE Alu -186 126 1 3375 148 11 2 chr15 22278408 22278936 -63416818 + Tigger1 DNA MER2_type 2 534 -1884 385 287 20 13 chr15 22278939 22279095 -63416659 + AluJb SINE Alu 140 254 -48 213 77 77 19 chr15 22279109 22279161 -63416593 + GA-rich Low_complexity Low_complexity 3 57 0 377 179 35 41 chr15 22279338 22279483 -63416271 + GA-rich Low_complexity Low_complexity 2 145 0 365 192 13 26 chr15 22279483 22279513 -63416241 + Tigger1 DNA MER2_type 521 550 -1868 2072 97 12 68 chr15 22279513 22279834 -63415920 - AluSx SINE Alu -8 304 2 365 192 13 26 chr15 22279834 22279881 -63415873 + Tigger1 DNA MER2_type 550 597 -1821 356 127 0 20 chr15 22279959 22280031 -63415723 + AluJo SINE Alu 82 136 -166 2823 118 29 0 chr15 22280048 22280465 -63415289 + Tigger1 DNA MER2_type 799 1227 -1191 2198 118 3 6 chr15 22280466 22280780 -63414974 + AluSp SINE Alu 1 313 0 4893 102 35 19 chr15 22280780 22281497 -63414257 + Tigger1 DNA MER2_type 1471 2202 -216 2344 81 3 0 chr15 22281497 22281792 -63413962 - AluSp SINE Alu -17 296 1 4893 102 35 19 chr15 22281792 22281818 -63413936 + Tigger1 DNA MER2_type 2202 2226 -192 677 179 8 0 chr15 22281818 22281941 -63413813 - FRAM SINE Alu -7 169 46 907 134 123 6 chr15 22281988 22282159 -63413595 + Tigger1 DNA MER2_type 2228 2418 0 27 0 0 0 chr15 22282635 22282662 -63413092 + GC_rich Low_complexity Low_complexity 1 27 0 285 333 7 28 chr15 22283953 22284094 -63411660 - MIR3 SINE MIR -6 202 65 408 291 194 47 chr15 22284523 22284655 -63411099 + L2 LINE L2 2825 2936 -377 386 209 102 94 chr15 22284655 22284909 -63410845 + MER112 DNA MER1_type 1 256 0 408 291 194 47 chr15 22284909 22284986 -63410768 + L2 LINE L2 2936 3000 -313 2307 79 0 30 chr15 22284986 22285332 -63410422 + AluSx SINE Alu 1 312 0 408 291 194 47 chr15 22285332 22285544 -63410210 + L2 LINE L2 3000 3309 -4 1746 119 19 8 chr15 22286073 22286334 -63409420 + AluSx SINE Alu 48 311 -1 1320 103 210 60 chr15 22286379 22286631 -63409123 + AluSx SINE Alu 1 290 -12 1551 177 34 10 chr15 22286717 22287011 -63408743 + AluJb SINE Alu 1 301 -11 501 272 130 67 chr15 22287117 22287597 -63408157 - L2 LINE L2 -24 3289 2757 2500 74 0 0 chr15 22287597 22287908 -63407846 - AluY SINE Alu 0 311 1 501 272 130 67 chr15 22287908 22288002 -63407752 - L2 LINE L2 -556 2757 2670 1101 168 9 35 chr15 22288003 22288235 -63407519 + AluSp SINE Alu 69 294 -19 27 0 0 0 chr15 22288436 22288463 -63407291 + AT_rich Low_complexity Low_complexity 1 27 0 441 205 107 144 chr15 22288903 22288981 -63406773 + HAL1 LINE L1 967 1046 -1461 1658 169 0 53 chr15 22288981 22289301 -63406453 + AluJb SINE Alu 5 307 -5 441 205 107 144 chr15 22289301 22289354 -63406400 + HAL1 LINE L1 1046 1099 -1408 2279 78 3 0 chr15 22289354 22289669 -63406085 - AluY SINE Alu 0 316 1 441 205 107 144 chr15 22289669 22289714 -63406040 + HAL1 LINE L1 1099 1144 -1363 774 158 0 43 chr15 22289714 22289853 -63405901 + AluJo/FLAM SINE Alu 1 133 -169 1551 189 7 30 chr15 22289855 22290151 -63405603 + AluJo SINE Alu 1 289 -23 441 205 107 144 chr15 22290151 22290227 -63405527 + HAL1 LINE L1 1145 1222 -1285 2477 92 0 0 chr15 22290227 22290531 -63405223 + AluSx SINE Alu 1 304 -8 441 205 107 144 chr15 22290531 22290662 -63405092 + HAL1 LINE L1 1222 1338 -1169 2252 92 6 54 chr15 22290662 22290978 -63404776 - AluSp SINE Alu -12 301 1 441 205 107 144 chr15 22290978 22291065 -63404689 + HAL1 LINE L1 1338 1427 -1080 1760 239 59 32 chr15 22291074 22291568 -63404186 - L1M4 LINE L1 -6035 507 1 1259 163 0 48 chr15 22291613 22291840 -63403914 + AluJo SINE Alu 87 302 -10 989 96 0 0 chr15 22291899 22292024 -63403730 - AluSq/x SINE Alu -187 125 1 741 230 0 30 chr15 22292027 22292192 -63403562 - FRAM SINE Alu -3 163 4 670 133 19 0 chr15 22292199 22292304 -63403450 - MER3 DNA MER1_type -97 112 6 915 189 0 63 chr15 22292622 22292812 -63402942 + MER5A DNA MER1_type 1 178 -11 1978 151 3 7 chr15 22293259 22293564 -63402190 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr15 22293919 22293941 -63401813 + GC_rich Low_complexity Low_complexity 1 22 0 2023 89 0 0 chr15 22294407 22294655 -63401099 + AluSx SINE Alu 56 303 -9 391 119 0 0 chr15 22295866 22295925 -63399829 - Alu SINE Alu -1 301 243 393 191 0 0 chr15 22295964 22296032 -63399722 - AluS SINE Alu -2 298 231 283 131 25 5 chr15 22296032 22296073 -63399681 - AluS SINE Alu -29 271 247 1580 168 3 49 chr15 22296073 22296359 -63399395 - AluJb SINE Alu -39 273 1 283 131 25 5 chr15 22296359 22296377 -63399377 - AluS SINE Alu -53 247 231 2227 108 3 16 chr15 22296582 22296889 -63398865 + AluSx SINE Alu 1 303 -9 21 36 0 0 chr15 22296976 22297004 -63398750 + AT_rich Low_complexity Low_complexity 1 28 0 440 197 26 26 chr15 22298031 22298148 -63397606 + FLAM_C SINE Alu 11 127 -16 235 307 0 18 chr15 22298221 22298335 -63397419 + HAL1 LINE L1 823 934 -1573 2093 135 26 0 chr15 22298355 22298658 -63397096 + AluSx SINE Alu 1 311 -1 2093 110 0 0 chr15 22298778 22299103 -63396651 - AluSg SINE Alu 0 325 1 830 171 19 6 chr15 22299152 22299310 -63396444 + L1MB7 LINE L1 6006 6165 -19 443 238 137 98 chr15 22299866 22299910 -63395844 - L1MC4a LINE L1 -1635 6173 6132 1665 139 0 118 chr15 22299910 22300256 -63395498 - AluJb SINE Alu -7 305 1 443 238 137 98 chr15 22300256 22300547 -63395207 - L1MC4a LINE L1 -1676 6132 5825 2300 115 0 6 chr15 22300890 22301203 -63394551 - AluSq SINE Alu 0 313 3 910 263 14 14 chr15 22301259 22301476 -63394278 + MIR SINE MIR 13 229 -33 2141 106 3 32 chr15 22302172 22302510 -63393244 - AluSp SINE Alu 0 313 1 2219 95 3 35 chr15 22302512 22302829 -63392925 - AluSg SINE Alu -1 309 3 1547 211 3 0 chr15 22303161 22303455 -63392299 - AluJo SINE Alu -17 295 1 1876 158 14 0 chr15 22303488 22303779 -63391975 + AluJo SINE Alu 3 297 -15 2176 93 58 0 chr15 22303783 22304074 -63391680 + AluSp SINE Alu 1 308 -5 1748 166 0 14 chr15 22304368 22304663 -63391091 + AluJo SINE Alu 6 296 -16 2511 48 0 3 chr15 22304849 22305142 -63390612 - AluY SINE Alu -19 292 1 273 258 0 34 chr15 22305146 22305235 -63390519 - L1MC5 LINE L1 -179 7782 7697 314 128 0 0 chr15 22305250 22305297 -63390457 + Alu SINE Alu 1 47 -253 1353 181 11 11 chr15 22305622 22305903 -63389851 - AluY SINE Alu -20 291 11 2248 98 0 3 chr15 22305968 22306264 -63389490 + AluSq SINE Alu 16 310 -3 435 38 0 0 chr15 22306273 22306326 -63389428 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 335 271 88 53 chr15 22306525 22306695 -63389059 + MIR SINE MIR 81 256 -6 2109 107 38 3 chr15 22307565 22307855 -63387899 + AluY SINE Alu 1 300 -11 724 144 168 0 chr15 22308484 22308609 -63387145 - MER46A DNA MER2_type -90 146 1 21 36 0 0 chr15 22309086 22309114 -63386640 + AT_rich Low_complexity Low_complexity 1 28 0 2062 104 0 7 chr15 22309567 22309837 -63385917 + AluSx SINE Alu 1 268 -44 195 42 0 0 chr15 22309839 22309863 -63385891 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1655 173 58 0 chr15 22309898 22310052 -63385702 - AluJb SINE Alu -18 294 150 347 0 0 23 chr15 22310052 22310096 -63385658 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 1655 173 58 0 chr15 22310096 22310219 -63385535 - AluJb SINE Alu -162 150 1 514 191 0 32 chr15 22310279 22310373 -63385381 + FLAM_C SINE Alu 35 125 -18 546 155 41 0 chr15 22311410 22311507 -63384247 + MER53 DNA DNA 85 185 -4 751 197 15 0 chr15 22311514 22311646 -63384108 + MER94 DNA DNA 1 134 0 21 36 0 0 chr15 22311667 22311695 -63384059 + AT_rich Low_complexity Low_complexity 1 28 0 1459 173 58 7 chr15 22311772 22312049 -63383705 - AluJo SINE Alu -14 298 8 25 0 0 0 chr15 22312052 22312077 -63383677 + AT_rich Low_complexity Low_complexity 1 25 0 2114 109 0 11 chr15 22312220 22312530 -63383224 - AluSx SINE Alu 0 307 1 2252 103 0 3 chr15 22313086 22313386 -63382368 - AluSg SINE Alu -10 300 2 2044 104 0 0 chr15 22313683 22313943 -63381811 - AluSq SINE Alu -53 260 1 584 238 216 14 chr15 22314028 22314398 -63381356 - L1MC4a LINE L1 -1675 6133 5689 630 280 102 88 chr15 22314590 22315022 -63380732 - L1MC4a LINE L1 -1979 5829 5392 1529 127 33 123 chr15 22315050 22315245 -63380509 - AluJb SINE Alu -5 307 153 754 125 0 0 chr15 22315245 22315349 -63380405 + U13 snRNA snRNA 1 104 0 1529 127 33 123 chr15 22315349 22315485 -63380269 - AluJb SINE Alu -159 153 6 1080 150 6 23 chr15 22315743 22315916 -63379838 + AluJb SINE Alu 133 302 -10 1674 189 10 0 chr15 22316553 22316850 -63378904 + AluJo SINE Alu 10 309 -3 983 257 9 14 chr15 22316882 22317104 -63378650 - MER58A DNA MER1_type -3 221 1 1570 44 6 0 chr15 22317153 22317334 -63378420 - L1PA4 LINE L1 -3 6152 5971 1202 267 139 9 chr15 22317364 22317802 -63377952 + L2 LINE L2 2819 3313 0 2014 131 0 0 chr15 22318332 22318632 -63377122 - AluSx SINE Alu 0 310 11 462 267 67 61 chr15 22318682 22318847 -63376907 + MIR3 SINE MIR 16 181 -27 473 163 151 0 chr15 22318847 22318933 -63376821 + AluJ/FLAM SINE Alu 1 99 -213 449 114 0 11 chr15 22318933 22319021 -63376733 + (CA)n Simple_repeat Simple_repeat 1 87 0 333 261 17 34 chr15 22319638 22319744 -63376010 - MIR SINE MIR -62 146 45 182 118 29 0 chr15 22319876 22319910 -63375844 + T-rich Low_complexity Low_complexity 4 38 0 2288 107 0 0 chr15 22320615 22320906 -63374848 + AluSx SINE Alu 6 296 -16 2259 114 0 3 chr15 22320914 22321221 -63374533 + AluSq SINE Alu 1 306 -7 1944 128 27 7 chr15 22323044 22323342 -63372412 - AluSx SINE Alu -8 304 1 1483 203 30 3 chr15 22323849 22324145 -63371609 + AluJb SINE Alu 1 304 -8 1881 152 10 3 chr15 22324501 22324797 -63370957 - AluJb SINE Alu -14 298 1 984 103 0 22 chr15 22324857 22324993 -63370761 - FLAM_C SINE Alu 0 133 1 189 0 0 0 chr15 22327069 22327090 -63368664 + (TA)n Simple_repeat Simple_repeat 1 21 0 1147 174 181 18 chr15 22327510 22327595 -63368159 + MER58B DNA MER1_type 14 84 -2336 1828 153 7 33 chr15 22327595 22327895 -63367859 + AluJb SINE Alu 3 294 -18 1147 174 181 18 chr15 22327895 22328091 -63367663 + MER58B DNA MER1_type 84 341 0 2160 108 17 17 chr15 22328117 22328414 -63367340 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr15 22328850 22328880 -63366874 + AT_rich Low_complexity Low_complexity 1 30 0 1521 151 19 22 chr15 22328906 22329177 -63366577 + AluJb SINE Alu 21 290 -22 787 44 83 0 chr15 22329192 22329422 -63366332 + (TA)n Simple_repeat Simple_repeat 1 249 0 1689 158 81 0 chr15 22330611 22330883 -63364871 + AluJb SINE Alu 6 299 -13 2145 93 0 45 chr15 22330943 22331254 -63364500 + AluSx SINE Alu 1 297 -15 331 179 30 0 chr15 22331843 22331910 -63363844 + MIR SINE MIR 161 229 -33 718 76 0 0 chr15 22332044 22332136 -63363618 - MER46A DNA MER2_type 0 236 145 1130 182 0 11 chr15 22332149 22332330 -63363424 - AluSx SINE Alu -131 181 3 2480 46 0 10 chr15 22332817 22333119 -63362635 - AluY SINE Alu -12 299 1 1799 134 7 50 chr15 22333395 22333693 -63362061 - AluJb SINE Alu -15 297 13 880 168 0 0 chr15 22333809 22333940 -63361814 + FLAM_C SINE Alu 2 132 -1 351 273 81 0 chr15 22333949 22334048 -63361706 + MIR SINE MIR 38 144 -64 * 810 241 79 29 chr15 22334043 22334284 -63361470 - MIR SINE MIR 0 262 10 328 266 49 42 chr15 22334621 22334764 -63360990 + MIR SINE MIR 8 151 -111 2314 186 29 77 chr15 22334769 22335416 -63360338 - LTR6A LTR ERV1 0 564 1 2237 113 3 3 chr15 22335483 22335794 -63359960 + AluSq SINE Alu 1 311 -2 2552 134 23 59 chr15 22335950 22335991 -63359763 + MER4E LTR ERV1 1 42 -737 2043 146 23 23 chr15 22335991 22336334 -63359420 - MER61A LTR ERV1 0 343 1 2552 134 23 59 chr15 22336334 22336367 -63359387 + MER4E LTR ERV1 42 75 -704 2068 137 14 0 chr15 22336367 22336660 -63359094 - AluSx SINE Alu -15 297 1 2552 134 23 59 chr15 22336660 22337011 -63358743 + MER4E LTR ERV1 75 577 -202 2455 86 0 13 chr15 22337011 22337324 -63358430 - AluSx SINE Alu -3 309 1 2552 134 23 59 chr15 22337324 22337520 -63358234 + MER4E LTR ERV1 577 779 0 295 280 118 21 chr15 22337594 22337687 -63358067 + MIR SINE MIR 43 144 -118 413 196 76 0 chr15 22337687 22337779 -63357975 - LTR36 LTR ERV1 0 611 513 1729 152 12 28 chr15 22337779 22338121 -63357633 - MER4A LTR ERV1 0 664 270 466 120 13 13 chr15 22338123 22338198 -63357556 - MER4A LTR ERV1 -589 75 1 * 907 188 135 103 chr15 22338198 22338643 -63357111 - LTR36 LTR ERV1 -94 517 58 444 190 112 17 chr15 22338658 22338774 -63356980 + MIR SINE MIR 132 258 -4 389 322 25 0 chr15 22339602 22339723 -63356031 + L2 LINE L2 3147 3270 -2 412 108 0 68 chr15 22339807 22339881 -63355873 - MER3 DNA MER1_type 0 209 141 1802 221 15 102 chr15 22339882 22340469 -63355285 + L1ME2 LINE L1 5611 6146 -18 839 194 6 34 chr15 22340469 22340644 -63355110 - MER3 DNA MER1_type -86 123 1 1273 119 36 55 chr15 22340990 22341056 -63354698 - MSTA LTR MaLR -2 426 360 2135 115 13 0 chr15 22341056 22341233 -63354521 - AluSq SINE Alu -5 308 124 192 40 0 0 chr15 22341233 22341258 -63354496 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2135 115 13 0 chr15 22341258 22341384 -63354370 - AluSq SINE Alu -189 124 1 1273 119 36 55 chr15 22341384 22341536 -63354218 - MSTA LTR MaLR -68 360 212 * 1712 214 29 47 chr15 22341519 22341963 -63353791 - MLT2B3 LTR ERVL -118 436 1 2352 99 3 0 chr15 22341975 22342278 -63353476 - AluSp SINE Alu -9 304 1 230 315 19 19 chr15 22342296 22342404 -63353350 + L2 LINE L2 1851 1958 -1356 230 98 49 0 chr15 22342407 22342448 -63353306 + T-rich Low_complexity Low_complexity 3 45 0 2500 89 0 0 chr15 22342451 22342764 -63352990 - AluSp SINE Alu 0 313 1 196 269 176 0 chr15 22343135 22343254 -63352500 + L2 LINE L2 2017 2156 -1158 583 146 0 0 chr15 22343585 22343667 -63352087 + AluS SINE Alu 2 83 -230 1011 114 17 0 chr15 22343696 22343871 -63351883 + (ATGGTG)n Simple_repeat Simple_repeat 1 178 0 186 43 0 0 chr15 22343875 22343898 -63351856 + (TGG)n Simple_repeat Simple_repeat 1 23 0 2175 208 107 51 chr15 22344516 22345227 -63350527 + L1MC4 LINE L1 7292 8042 0 191 36 36 0 chr15 22345352 22345380 -63350374 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 2248 116 7 0 chr15 22345684 22345987 -63349767 - AluSq SINE Alu -8 305 1 2312 82 3 3 chr15 22347515 22347809 -63347945 + AluY SINE Alu 2 295 -16 26 0 0 0 chr15 22348316 22348342 -63347412 + AT_rich Low_complexity Low_complexity 1 26 0 2242 99 0 3 chr15 22348524 22348818 -63346936 - AluSq SINE Alu -13 300 8 1037 99 19 8 chr15 22349302 22349565 -63346189 + (TGG)n Simple_repeat Simple_repeat 1 266 0 1510 185 33 23 chr15 22350244 22350547 -63345207 + AluJo SINE Alu 1 306 -6 296 121 182 0 chr15 22350615 22350681 -63345073 + L2 LINE L2 3221 3298 -15 270 257 50 20 chr15 22350685 22350786 -63344968 - MER103 DNA DNA -62 104 1 22 35 0 0 chr15 22350971 22351000 -63344754 + AT_rich Low_complexity Low_complexity 1 29 0 2097 144 0 10 chr15 22351000 22351313 -63344441 + AluSx SINE Alu 1 310 -2 394 112 0 184 chr15 22351408 22351506 -63344248 - MADE1 DNA Mariner 0 80 1 312 306 63 89 chr15 22351513 22351863 -63343891 + L1ME LINE L1 5321 5661 -460 265 89 22 0 chr15 22351867 22351912 -63343842 - MADE1 DNA Mariner -34 46 1 28 0 0 0 chr15 22352198 22352226 -63343528 + AT_rich Low_complexity Low_complexity 1 28 0 1502 222 99 41 chr15 22352261 22352798 -63342956 - L1ME3A LINE L1 -190 5980 5413 304 171 39 77 chr15 22352942 22353117 -63342637 - L1ME3A LINE L1 -779 5399 5236 1390 241 64 29 chr15 22354806 22354935 -63340819 - MER63B DNA MER1_type -627 435 312 2149 116 10 0 chr15 22354935 22355236 -63340518 - AluSx SINE Alu -8 304 1 1390 241 64 29 chr15 22355236 22355526 -63340228 - MER63B DNA MER1_type -750 312 1 831 173 8 0 chr15 22356480 22356613 -63339141 - AluJo SINE Alu -178 134 1 919 141 0 0 chr15 22357199 22357334 -63338420 + FLAM_C SINE Alu 1 135 -8 828 144 0 0 chr15 22357337 22357462 -63338292 - AluSg/x SINE Alu -6 304 180 8825 50 6 15 chr15 22357462 22358533 -63337221 + MER11C LTR ERVK 1 1061 -10 1469 114 45 0 chr15 22358533 22358735 -63337019 - AluSq SINE Alu -102 211 1 28 0 0 0 chr15 22358742 22358770 -63336984 + AT_rich Low_complexity Low_complexity 1 28 0 295 289 91 25 chr15 22358892 22358922 -63336832 - L2 LINE L2 -8 3264 3237 2207 123 18 6 chr15 22358922 22359255 -63336499 - MER1B DNA MER1_type 0 337 1 295 289 91 25 chr15 22359255 22359345 -63336409 - L2 LINE L2 -35 3237 3136 285 249 33 58 chr15 22359476 22359662 -63336092 + L2 LINE L2 2971 3269 -3 23 33 0 0 chr15 22359699 22359729 -63336025 + AT_rich Low_complexity Low_complexity 1 30 0 296 280 20 0 chr15 22360412 22360512 -63335242 - MIR3 SINE MIR -41 167 66 213 259 35 0 chr15 22361447 22361505 -63334249 - L2 LINE L2 0 3272 3213 494 254 86 30 chr15 22361612 22361809 -63333945 - MIR SINE MIR -21 241 34 274 200 14 14 chr15 22361855 22361925 -63333829 - L2 LINE L2 -211 3061 2992 409 226 9 28 chr15 22361994 22362100 -63333654 - MER5B DNA MER1_type -1 177 74 21 57 0 0 chr15 22362977 22363012 -63332742 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr15 22363040 22363069 -63332685 + AT_rich Low_complexity Low_complexity 1 29 0 2347 115 0 0 chr15 22363103 22363440 -63332314 + AluSx SINE Alu 1 337 0 284 343 28 17 chr15 22363491 22363669 -63332085 - L1MC/D LINE L1 -2223 5585 5406 1827 157 0 14 chr15 22363720 22364014 -63331740 + AluJo SINE Alu 1 290 -22 319 62 0 97 chr15 22364015 22364128 -63331626 + (GGAA)n Simple_repeat Simple_repeat 1 102 0 332 250 81 16 chr15 22364311 22364435 -63331319 + L2 LINE L2 3171 3302 -11 470 66 16 0 chr15 22364435 22364496 -63331258 + U7 snRNA snRNA 1 62 -1 189 74 0 0 chr15 22364528 22364555 -63331199 + (CATA)n Simple_repeat Simple_repeat 2 28 0 421 216 55 106 chr15 22366323 22366390 -63329364 - MER5A DNA MER1_type 0 189 120 2478 85 0 0 chr15 22366390 22366695 -63329059 + AluY SINE Alu 1 305 -6 421 216 55 106 chr15 22366695 22366826 -63328928 - MER5A DNA MER1_type -69 120 1 229 299 11 11 chr15 22366995 22367082 -63328672 - MIR SINE MIR -136 126 40 2139 111 0 13 chr15 22367501 22367799 -63327955 + AluJo SINE Alu 4 297 -15 22 0 0 0 chr15 22367805 22367827 -63327927 + AT_rich Low_complexity Low_complexity 1 22 0 743 227 17 6 chr15 22367827 22368003 -63327751 + MER5A DNA MER1_type 12 189 0 2250 104 23 3 chr15 22368403 22368710 -63327044 - AluSq SINE Alu 0 313 1 4195 65 69 24 chr15 22368791 22369373 -63326381 + LTR66 LTR ERVL 1 608 -2 317 304 96 0 chr15 22369522 22369657 -63326097 + L1ME2 LINE L1 6014 6161 -3 57 66 0 0 chr15 22369660 22369766 -63325988 + AT_rich Low_complexity Low_complexity 1 106 0 2316 109 0 0 chr15 22370080 22370382 -63325372 - AluSx SINE Alu -10 302 1 2235 106 0 16 chr15 22370385 22370688 -63325066 - AluSq SINE Alu -15 298 1 1236 197 119 64 chr15 22371046 22371467 -63324287 + LTR56 LTR ERV1 2 445 0 1856 138 24 10 chr15 22371595 22371891 -63323863 - AluSx SINE Alu -12 300 1 1660 155 19 4 chr15 22372218 22372482 -63323272 - AluJb SINE Alu -23 289 22 2204 129 10 0 chr15 22372621 22372924 -63322830 - AluSx SINE Alu -6 306 1 1351 97 27 0 chr15 22372935 22373121 -63322633 - AluSc SINE Alu -5 304 114 811 82 231 0 chr15 22373138 22373285 -63322469 - MER30 DNA MER1_type -49 181 1 1433 162 143 4 chr15 22373429 22373694 -63322060 + AluJb SINE Alu 1 302 0 203 265 20 0 chr15 22373979 22374028 -63321726 + L2 LINE L2 3206 3255 -17 462 201 138 135 chr15 22374206 22374485 -63321269 + L1MC4 LINE L1 7634 7916 -126 1941 138 10 10 chr15 22374485 22374783 -63320971 - AluJb SINE Alu -14 298 1 462 201 138 135 chr15 22374783 22374910 -63320844 + L1MC4 LINE L1 7916 8041 -1 1456 156 136 66 chr15 22375367 22375937 -63319817 + MER39 LTR ERV1 2 697 -10 1572 123 31 50 chr15 22375948 22376209 -63319545 + AluSx SINE Alu 50 305 -7 2731 149 47 24 chr15 22376218 22376754 -63319000 + L1MB7 LINE L1 5637 6184 0 2564 57 3 0 chr15 22376959 22377255 -63318499 - AluY SINE Alu -14 297 1 2021 142 7 0 chr15 22378274 22378563 -63317191 - AluSx SINE Alu -21 291 1 25 0 0 0 chr15 22379450 22379475 -63316279 + AT_rich Low_complexity Low_complexity 1 25 0 1512 157 77 0 chr15 22380710 22380997 -63314757 + AluJo SINE Alu 1 307 0 211 204 0 0 chr15 22381214 22381268 -63314486 + A-rich Low_complexity Low_complexity 1 54 0 419 294 119 46 chr15 22381767 22381985 -63313769 + MIR SINE MIR 28 261 -1 1997 148 3 0 chr15 22381999 22382302 -63313452 - AluSx SINE Alu -8 304 1 219 250 19 0 chr15 22382586 22382638 -63313116 + GA-rich Low_complexity Low_complexity 2 54 0 334 236 29 50 chr15 22382968 22383108 -63312646 + L1MC5 LINE L1 7552 7688 -273 1875 85 0 4 chr15 22383164 22383399 -63312355 - AluSc SINE Alu -75 234 1 1075 159 0 6 chr15 22383399 22383562 -63312192 + AluJo SINE Alu 117 278 -34 2132 104 0 17 chr15 22383562 22383875 -63311879 - AluSx SINE Alu 0 308 1 1202 157 57 40 chr15 22383929 22384177 -63311577 - Tigger2a DNA MER2_type 0 444 193 1163 127 0 0 chr15 22384180 22384338 -63311416 - AluSg/x SINE Alu -19 291 134 924 110 41 164 chr15 22384338 22384499 -63311255 - Tigger2a DNA MER2_type -2516 192 63 2091 81 8 0 chr15 22384499 22384758 -63310996 + AluSx SINE Alu 27 287 -25 924 110 41 164 chr15 22384758 22384815 -63310939 - Tigger2a DNA MER2_type -2645 63 1 2221 92 3 41 chr15 22385308 22385625 -63310129 - AluSx SINE Alu -7 305 1 1265 224 32 35 chr15 22386127 22386365 -63309389 + MER2 DNA MER2_type 1 239 -105 1877 138 10 20 chr15 22386365 22386661 -63309093 - AluSx SINE Alu -19 293 1 1265 224 32 35 chr15 22386661 22386766 -63308988 + MER2 DNA MER2_type 239 343 -1 2124 208 107 51 chr15 22387522 22388233 -63307521 + L1MC4 LINE L1 7292 8042 0 191 36 36 0 chr15 22388358 22388386 -63307368 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 2267 112 7 0 chr15 22388690 22388993 -63306761 - AluSq SINE Alu -8 305 1 1520 245 80 53 chr15 22389317 22389678 -63306076 + L1ME3A LINE L1 5601 5984 -186 1594 138 100 38 chr15 22389678 22389969 -63305785 - AluJb SINE Alu -3 309 1 1520 245 80 53 chr15 22389969 22390158 -63305596 + L1ME3A LINE L1 5984 6166 -4 1537 183 3 55 chr15 22390225 22390537 -63305217 - AluJb SINE Alu -16 296 1 380 343 39 24 chr15 22390579 22390786 -63304968 + L2 LINE L2 2901 3110 -162 180 274 255 0 chr15 22390861 22390963 -63304791 + L2 LINE L2 3144 3271 -1 2502 83 0 0 chr15 22391339 22391641 -63304113 - AluSx SINE Alu -10 302 1 451 277 66 18 chr15 22392988 22393154 -63302600 + L3 LINE CR1 1385 1558 -19 216 0 0 0 chr15 22393419 22393443 -63302311 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 763 156 0 0 chr15 22393443 22393557 -63302197 - FLAM_C SINE Alu -193 119 3 21 36 0 0 chr15 22393687 22393715 -63302039 + AT_rich Low_complexity Low_complexity 1 28 0 1958 148 10 7 chr15 22394190 22394487 -63301267 - AluSx SINE Alu -14 298 1 431 214 214 26 chr15 22394487 22394833 -63300921 + L1ME4a LINE L1 5709 6119 -2 500 283 133 39 chr15 22395245 22395745 -63300009 + L2 LINE L2 2664 3292 -21 363 269 17 34 chr15 22395808 22395927 -63299827 - MIR SINE MIR -115 147 31 311 324 161 25 chr15 22396010 22396415 -63299339 - L2 LINE L2 -631 2683 2224 1253 185 119 11 chr15 22396990 22397276 -63298478 + MER58B DNA MER1_type 25 341 0 2306 89 7 0 chr15 22397289 22397581 -63298173 - AluSg SINE Alu -16 294 1 2229 121 0 3 chr15 22397590 22397887 -63297867 - AluSp SINE Alu -17 296 1 1329 122 43 135 chr15 22397894 22398085 -63297669 - AluJo SINE Alu -15 297 143 1603 189 11 11 chr15 22398085 22398371 -63297383 + AluJo SINE Alu 1 286 -26 1329 122 43 135 chr15 22398371 22398483 -63297271 - AluJo SINE Alu -169 143 22 2095 106 0 0 chr15 22398517 22398782 -63296972 - AluSq SINE Alu -48 265 1 827 154 0 23 chr15 22398798 22398928 -63296826 - FLAM_C SINE Alu -6 127 1 265 297 22 22 chr15 22399008 22399099 -63296655 - L2 LINE L2 -1357 1957 1867 781 271 101 72 chr15 22399526 22399823 -63295931 - L1MC4a LINE L1 -119 6002 5715 1720 134 24 45 chr15 22399823 22400113 -63295641 - AluJo SINE Alu -18 294 11 781 271 101 72 chr15 22400113 22400310 -63295444 - L1MC4a LINE L1 -406 5715 5486 2083 128 7 3 chr15 22400310 22400607 -63295147 - AluSx SINE Alu -14 298 1 781 271 101 72 chr15 22400607 22400705 -63295049 - L1MC4a LINE L1 -635 5486 5392 293 240 58 19 chr15 22400700 22400804 -63294950 + L1MC4 LINE L1 7139 7246 -796 * 871 170 7 20 chr15 22400809 22400962 -63294792 - FRAM SINE Alu -25 151 1 758 228 88 0 chr15 22400963 22401156 -63294598 + L1MC4 LINE L1 7238 7447 -595 455 263 8 23 chr15 22401169 22401302 -63294452 + L1MC4 LINE L1 7790 7920 -122 202 200 0 25 chr15 22401322 22401362 -63294392 + GA-rich Low_complexity Low_complexity 4 42 0 577 154 23 15 chr15 22401362 22401492 -63294262 + L1MC4 LINE L1 7912 8042 0 328 200 93 57 chr15 22401513 22401653 -63294101 - L1MC4a LINE L1 -2410 5398 5254 2183 188 194 24 chr15 22403243 22403898 -63291856 + L1MC4 LINE L1 7276 7995 0 2201 117 20 25 chr15 22404443 22404801 -63290953 + L1MA4 LINE L1 5939 6294 -6 2184 113 3 7 chr15 22404866 22405176 -63290578 - AluSx SINE Alu -3 309 1 286 298 133 0 chr15 22408831 22408982 -63286772 + L3 LINE CR1 1180 1350 -227 2027 141 6 13 chr15 22409448 22409760 -63285994 - AluSx SINE Alu -2 310 1 2052 171 34 8 chr15 22410024 22410380 -63285374 - MLT1A1 LTR MaLR 0 365 1 21 36 0 0 chr15 22410799 22410827 -63284927 + AT_rich Low_complexity Low_complexity 1 28 0 483 257 14 75 chr15 22411442 22411656 -63284098 - L2 LINE L2 -4 3309 3109 3439 197 70 33 chr15 22411688 22412502 -63283252 - MER21B LTR ERV1 -1 862 19 376 266 0 0 chr15 22412524 22412603 -63283151 - MER21B LTR ERV1 -773 90 12 450 301 68 6 chr15 22412623 22412786 -63282968 - L2 LINE L2 -261 3052 2880 2348 99 0 3 chr15 22412807 22413111 -63282643 - AluSg SINE Alu -7 303 1 198 391 87 32 chr15 22413526 22413779 -63281975 + L2 LINE L2 3006 3272 0 2138 138 17 46 chr15 22415287 22415634 -63280120 - MER1B DNA MER1_type 0 337 1 300 309 0 0 chr15 22415715 22415796 -63279958 + MIR SINE MIR 62 142 -66 1550 149 8 4 chr15 22415825 22416060 -63279694 + MER46A DNA MER2_type 1 236 0 1013 223 13 22 chr15 22416194 22416423 -63279331 - MIR SINE MIR -33 229 3 381 317 35 0 chr15 22416423 22416565 -63279189 + MIR SINE MIR 30 176 -86 255 203 188 0 chr15 22416559 22416623 -63279131 - L2 LINE L2 -1 3312 3237 * 232 243 71 0 chr15 22416629 22416699 -63279055 + MIR SINE MIR 188 262 0 217 244 0 0 chr15 22417305 22417346 -63278408 + (CA)n Simple_repeat Simple_repeat 2 42 0 978 236 48 0 chr15 22417554 22417762 -63277992 - MIR SINE MIR -44 218 1 2144 123 0 19 chr15 22418267 22418577 -63277177 - AluSx SINE Alu -8 304 1 319 309 41 31 chr15 22418683 22418780 -63276974 - MIR SINE MIR -87 121 24 393 315 103 7 chr15 22419479 22419547 -63276207 + MER5A DNA MER1_type 9 69 -120 1978 148 26 0 chr15 22419547 22419850 -63275904 + AluSx SINE Alu 1 311 -1 393 315 103 7 chr15 22419850 22419927 -63275827 + MER5A DNA MER1_type 69 168 -21 1291 183 0 0 chr15 22420040 22420259 -63275495 + AluJb SINE Alu 86 304 -8 272 192 19 0 chr15 22420327 22420379 -63275375 - L3b LINE CR1 -4 1579 1527 308 208 0 0 chr15 22420741 22420794 -63274960 + L1MD3 LINE L1 7064 7116 -879 2771 216 29 21 chr15 22420798 22421438 -63274316 + L1MD3 LINE L1 6136 6328 -16 766 172 0 33 chr15 22421548 22421670 -63274084 + FLAM_C SINE Alu 2 119 -14 21 0 0 0 chr15 22421670 22421691 -63274063 + AT_rich Low_complexity Low_complexity 1 21 0 184 322 348 0 chr15 22422025 22422140 -63273614 - L2 LINE L2 -4 3268 3114 580 251 113 9 chr15 22423329 22423560 -63272194 - L1ME4a LINE L1 -1 6120 5866 835 318 36 75 chr15 22423596 22424118 -63271636 - MER34 LTR ERV1 -29 513 12 1684 179 7 4 chr15 22424716 22424995 -63270759 + AluJb SINE Alu 13 292 -20 720 240 112 34 chr15 22425601 22425834 -63269920 + MIR SINE MIR 12 262 0 784 86 0 14 chr15 22425870 22426115 -63269639 + AluSg SINE Alu 1 292 -17 341 222 152 10 chr15 22426586 22426685 -63269069 - L2 LINE L2 -7 3265 3153 1769 153 18 3 chr15 22426889 22427200 -63268554 - AluSq SINE Alu 0 315 1 1039 119 0 0 chr15 22427200 22427334 -63268420 - AluSq/x SINE Alu -177 135 2 276 220 55 88 chr15 22429290 22429381 -63266373 - MIR SINE MIR -85 123 36 454 118 0 0 chr15 22429448 22429516 -63266238 - AluS SINE Alu -10 299 232 1263 99 33 6 chr15 22429516 22429562 -63266192 - AluSq SINE Alu -127 186 143 2713 35 0 10 chr15 22429562 22429875 -63265879 - AluY SINE Alu -1 310 1 1263 99 33 6 chr15 22429875 22430009 -63265745 - AluSq SINE Alu -170 143 1 233 304 84 60 chr15 22430036 22430231 -63265523 - MIR SINE MIR -54 208 4 27 29 0 0 chr15 22431104 22431138 -63264616 + GC_rich Low_complexity Low_complexity 1 34 0 24 53 0 0 chr15 22431150 22431188 -63264566 + GC_rich Low_complexity Low_complexity 1 38 0 236 218 36 0 chr15 22432718 22432773 -63262981 - L1ME4a LINE L1 -81 6040 5984 202 247 93 93 chr15 22433210 22433307 -63262447 + L2 LINE L2 1915 2011 -1303 371 321 180 33 chr15 22433469 22433896 -63261858 + L2 LINE L2 2245 2734 -580 2367 86 3 0 chr15 22434349 22434652 -63261102 + AluY SINE Alu 1 304 -7 207 244 0 122 chr15 22434687 22434769 -63260985 + MER91A DNA MER1_type 1 72 -118 185 210 161 32 chr15 22435523 22435585 -63260169 + MIR SINE MIR 56 125 -83 183 42 0 0 chr15 22436185 22436209 -63259545 + (TA)n Simple_repeat Simple_repeat 2 25 0 2221 82 0 20 chr15 22436209 22436502 -63259252 - AluY SINE Alu -24 287 1 1256 159 40 49 chr15 22437410 22437636 -63258118 - MER58A DNA MER1_type 0 224 1 227 261 159 57 chr15 22438023 22438199 -63257555 + MIR SINE MIR 37 230 -32 21 36 0 0 chr15 22438318 22438346 -63257408 + AT_rich Low_complexity Low_complexity 1 28 0 21 89 0 0 chr15 22438360 22438416 -63257338 + AT_rich Low_complexity Low_complexity 1 56 0 2184 109 0 13 chr15 22438645 22438948 -63256806 + AluSg SINE Alu 1 299 -11 2244 122 3 0 chr15 22439312 22439623 -63256131 - AluSx SINE Alu 0 312 1 218 186 157 57 chr15 22440007 22440077 -63255677 - L2 LINE L2 -5 3267 3191 1918 123 20 20 chr15 22441088 22441388 -63254366 - AluSx SINE Alu -12 300 1 262 239 97 60 chr15 22441833 22441967 -63253787 - MIR SINE MIR 0 262 124 2374 92 0 0 chr15 22442362 22442657 -63253097 - AluSx SINE Alu -15 297 3 1766 131 99 26 chr15 22442682 22442995 -63252759 - MER44D DNA MER2_type -3 606 1 1514 156 35 96 chr15 22445170 22445484 -63250270 - AluJo SINE Alu -7 295 1 1693 144 59 0 chr15 22446455 22446725 -63249029 - AluSx SINE Alu -26 286 1 25 31 0 0 chr15 22448163 22448195 -63247559 + AT_rich Low_complexity Low_complexity 1 32 0 923 139 0 0 chr15 22449289 22449418 -63246336 - Tigger7 DNA MER2_type -1 2586 2458 3545 156 55 11 chr15 22449426 22450066 -63245688 - Tigger7 DNA MER2_type -1819 668 1 381 103 0 17 chr15 22450794 22450852 -63244902 - AluS SINE Alu -232 71 15 1345 129 47 13 chr15 22451084 22451317 -63244437 + MER96B DNA MER1_type? 1 241 -176 663 123 9 9 chr15 22451438 22451544 -63244210 + MER50 LTR ERV1 499 604 -130 2267 188 9 22 chr15 22451760 22452212 -63243542 - L1MB7 LINE L1 -136 6048 5603 181 321 19 0 chr15 22452640 22452693 -63243061 - L2 LINE L2 -8 3305 3252 193 375 0 0 chr15 22452843 22452939 -63242815 + L2 LINE L2 1748 1843 -1471 2053 120 0 7 chr15 22453016 22453315 -63242439 - AluSq SINE Alu -16 297 1 4580 190 48 31 chr15 22453357 22454373 -63241381 + Cheshire DNA MER1_type 7 1039 -1381 4291 161 63 72 chr15 22454376 22454842 -63240912 + Cheshire DNA MER1_type 1397 1866 -554 834 112 0 0 chr15 22454842 22454949 -63240805 + U6 snRNA snRNA 1 107 0 4291 161 63 72 chr15 22454949 22455008 -63240746 + Cheshire DNA MER1_type 1866 1924 -496 2337 93 0 6 chr15 22455008 22455319 -63240435 + AluSg SINE Alu 1 309 -1 4291 161 63 72 chr15 22455319 22455433 -63240321 + Cheshire DNA MER1_type 1924 2038 -382 2243 79 17 7 chr15 22455433 22455725 -63240029 + AluY SINE Alu 1 295 -16 4291 161 63 72 chr15 22455725 22456117 -63239637 + Cheshire DNA MER1_type 2038 2420 0 528 265 205 44 chr15 22456272 22456657 -63239097 + L2 LINE L2 2529 2975 -339 1983 215 75 18 chr15 22456840 22457333 -63238421 + MER74B LTR ERVL 52 572 -50 296 290 80 0 chr15 22457408 22457508 -63238246 - MLT1L LTR MaLR -8 607 500 364 288 45 0 chr15 22457633 22457765 -63237989 - MLT1L LTR MaLR -312 303 166 451 209 11 22 chr15 22458057 22458148 -63237606 - MER5A DNA MER1_type -9 180 91 3310 214 87 112 chr15 22459615 22460184 -63235570 + L2 LINE L2 1587 2169 -1144 2297 97 10 0 chr15 22460184 22460483 -63235271 - AluSp SINE Alu -11 302 1 3310 214 87 112 chr15 22460483 22461459 -63234295 + L2 LINE L2 2169 3097 -216 1944 146 0 25 chr15 22461727 22462043 -63233711 - AluSg SINE Alu 0 310 3 1514 35 0 0 chr15 22462205 22462376 -63233378 - L1PA5 LINE L1 0 6154 5984 249 33 0 0 chr15 22463399 22463429 -63232325 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 2280 120 37 142 chr15 22464313 22464416 -63231338 - MLT2C2 LTR ERVL 0 464 352 405 0 0 0 chr15 22464416 22464461 -63231293 + (GA)n Simple_repeat Simple_repeat 2 46 0 2280 120 37 142 chr15 22464461 22464629 -63231125 - MLT2C2 LTR ERVL -112 352 270 2234 95 3 41 chr15 22464629 22464946 -63230808 - AluSx SINE Alu -6 306 2 2280 120 37 142 chr15 22464946 22465189 -63230565 - MLT2C2 LTR ERVL -194 270 3 2097 133 0 0 chr15 22465481 22465766 -63229988 + AluSx SINE Alu 1 285 -27 2135 128 3 6 chr15 22466237 22466549 -63229205 + AluSx SINE Alu 1 311 -1 2213 107 7 0 chr15 22466698 22466997 -63228757 - AluSp SINE Alu -12 301 1 2312 82 3 3 chr15 22468525 22468819 -63226935 + AluY SINE Alu 2 295 -16 26 0 0 0 chr15 22469327 22469353 -63226401 + AT_rich Low_complexity Low_complexity 1 26 0 2252 98 0 3 chr15 22469535 22469830 -63225924 - AluSq SINE Alu -12 301 8 1500 203 70 0 chr15 22470544 22470657 -63225097 + AluJo SINE Alu 1 105 -207 198 0 0 0 chr15 22470657 22470679 -63225075 + (GAAAA)n Simple_repeat Simple_repeat 4 25 0 1500 203 70 0 chr15 22470679 22470851 -63224903 + AluJo SINE Alu 105 306 -6 2577 26 3 13 chr15 22471474 22471776 -63223978 + AluY SINE Alu 1 299 -12 2031 156 0 3 chr15 22471914 22472222 -63223532 - AluJb SINE Alu -5 307 1 2164 120 7 10 chr15 22472590 22472899 -63222855 - AluSx SINE Alu -4 308 1 514 295 70 20 chr15 22473144 22473344 -63222410 - MIR SINE MIR -50 212 3 284 226 160 44 chr15 22473696 22473876 -63221878 + MER5A DNA MER1_type 27 187 -2 305 259 208 4 chr15 22474272 22474401 -63221353 - MER5B DNA MER1_type -21 168 1 216 176 0 0 chr15 22474407 22474441 -63221313 - MIR SINE MIR -56 152 119 2318 106 0 0 chr15 22474578 22474880 -63220874 - AluSg SINE Alu -8 302 1 2337 198 83 27 chr15 22475224 22475326 -63220428 + MLT1G LTR MaLR 9 104 -486 830 223 77 59 chr15 22475326 22475476 -63220278 - MER58A DNA MER1_type -2196 224 67 2397 107 0 0 chr15 22475476 22475784 -63219970 - AluSg SINE Alu 0 310 3 830 223 77 59 chr15 22475784 22475853 -63219901 - MER58A DNA MER1_type -2353 67 1 2337 198 83 27 chr15 22475853 22476301 -63219453 + MLT1G LTR MaLR 104 590 0 472 229 50 14 chr15 22476594 22476734 -63219020 + MER31-int LTR ERV1 1043 1187 -3749 367 240 7 75 chr15 22476745 22476891 -63218863 - LTR27 LTR ERV1 -7 629 494 421 108 26 43 chr15 22476952 22477034 -63218720 - LTR28 LTR ERV1 -462 558 488 1856 128 16 22 chr15 22477923 22478235 -63217519 + AluSx SINE Alu 1 310 -2 808 150 0 50 chr15 22478591 22478731 -63217023 - FLAM_C SINE Alu 0 133 1 1974 139 13 3 chr15 22479589 22479892 -63215862 - AluSx SINE Alu -6 306 1 1416 152 9 0 chr15 22480001 22480225 -63215529 - AluJb SINE Alu -3 309 84 2349 71 34 0 chr15 22480434 22480730 -63215024 + AluSc SINE Alu 1 306 -3 984 231 54 0 chr15 22481228 22481488 -63214266 - HAL1 LINE L1 -951 1556 1283 1322 153 2 89 chr15 22481503 22481797 -63213957 - MER4B LTR ERV1 -278 332 87 1289 74 62 0 chr15 22481956 22482132 -63213622 + AluSc SINE Alu 120 306 -3 996 227 54 0 chr15 22482624 22482884 -63212870 - HAL1 LINE L1 -951 1556 1283 2123 95 61 3 chr15 22482899 22483234 -63212520 - MER4B LTR ERV1 -278 332 1 2177 108 30 0 chr15 22483287 22483584 -63212170 + AluSg SINE Alu 1 306 -4 462 191 0 43 chr15 22483821 22483915 -63211839 + MER21B LTR ERV1 1 90 -773 2948 207 46 42 chr15 22484063 22484327 -63211427 + MER21B LTR ERV1 98 359 -504 3396 126 2 72 chr15 22484327 22484732 -63211022 + LTR26B LTR ERV1 1 356 -175 2140 103 24 3 chr15 22484732 22485024 -63210730 + AluSq SINE Alu 1 298 -15 3396 126 2 72 chr15 22485024 22485189 -63210565 + LTR26B LTR ERV1 356 531 0 2948 207 46 42 chr15 22485189 22485635 -63210119 + MER21B LTR ERV1 359 811 -52 2344 161 57 28 chr15 22485659 22486081 -63209673 - Tigger2a DNA MER2_type 0 434 1 2013 128 0 0 chr15 22486310 22486598 -63209156 + AluJb SINE Alu 1 288 -24 30 45 0 0 chr15 22486781 22486825 -63208929 + AT_rich Low_complexity Low_complexity 1 44 0 27 29 0 0 chr15 22486939 22486973 -63208781 + AT_rich Low_complexity Low_complexity 1 34 0 2213 85 7 14 chr15 22487200 22487494 -63208260 - AluY SINE Alu -19 292 1 583 113 258 8 chr15 22487687 22487811 -63207943 - MER4C LTR ERV1 -20 445 291 1342 143 133 48 chr15 22487866 22488181 -63207573 - MER4A LTR ERV1 -322 342 1 827 174 28 0 chr15 22488181 22488325 -63207429 + FAM SINE Alu 26 173 -12 1336 206 32 14 chr15 22488374 22488651 -63207103 + AluJo SINE Alu 1 282 -30 378 0 0 0 chr15 22488681 22488723 -63207031 + (CA)n Simple_repeat Simple_repeat 2 43 0 332 43 0 21 chr15 22488777 22488824 -63206930 + (TG)n Simple_repeat Simple_repeat 2 47 0 3553 106 0 26 chr15 22589001 22589316 -63106438 + L1PA6 LINE L1 5475 5772 -382 2189 82 4 0 chr15 22589316 22589586 -63106168 + AluY SINE Alu 35 305 -6 3553 106 0 26 chr15 22589586 22589799 -63105955 + L1PA6 LINE L1 5772 5989 -165 2823 118 29 0 chr15 22590152 22590569 -63105185 - Tigger1 DNA MER2_type -1191 1227 799 356 127 0 20 chr15 22590586 22590658 -63105096 - AluJo SINE Alu -166 136 82 247 88 0 0 chr15 22590736 22590770 -63104984 - Tigger1 DNA MER2_type -1821 597 564 713 143 0 0 chr15 22590783 22590888 -63104866 + AluSq/x SINE Alu 2 106 -206 262 278 16 50 chr15 22590942 22591347 -63104407 + GA-rich Low_complexity Low_complexity 1 391 0 27 0 0 0 chr15 22591827 22591854 -63103900 + GC_rich Low_complexity Low_complexity 1 27 0 907 134 123 6 chr15 22592330 22592501 -63103253 - Tigger1 DNA MER2_type 0 2418 2228 518 182 10 0 chr15 22592548 22592647 -63103107 + FRAM SINE Alu 46 145 -31 1048 101 7 0 chr15 22592751 22592889 -63102865 - AluSq/x SINE Alu -173 139 1 452 224 28 19 chr15 22593364 22593471 -63102283 + L2 LINE L2 3144 3251 -21 382 300 94 0 chr15 22593528 22593698 -63102056 + MIR SINE MIR 70 255 -7 22 88 0 0 chr15 22594240 22594297 -63101457 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr15 22594328 22594351 -63101403 + AT_rich Low_complexity Low_complexity 1 23 0 2055 133 0 10 chr15 22594351 22594645 -63101109 - AluSx SINE Alu -21 291 1 486 312 82 68 chr15 22594921 22595156 -63100598 + MLT1K LTR MaLR 2 232 -356 2396 98 0 0 chr15 22595156 22595452 -63100302 - AluSx SINE Alu -16 296 1 486 312 82 68 chr15 22595452 22595742 -63100012 + MLT1K LTR MaLR 232 534 -54 3751 185 127 14 chr15 22595860 22596869 -63098885 - MER52A LTR ERV1 -6 1272 1 376 129 14 29 chr15 22596981 22597051 -63098703 + AluS SINE Alu 232 300 0 211 316 13 0 chr15 22597095 22597171 -63098583 - MIR SINE MIR -30 232 156 * 974 252 4 46 chr15 22597169 22597431 -63098323 + MIR SINE MIR 12 262 0 317 111 0 0 chr15 22597461 22597506 -63098248 - MER4D LTR ERV1 -77 826 782 364 324 29 22 chr15 22597509 22597648 -63098106 - MIR SINE MIR -122 140 1 1855 79 4 0 chr15 22598063 22598303 -63097451 - MER41A LTR ERV1 0 554 314 226 188 0 0 chr15 22598298 22598346 -63097408 - Alu SINE Alu 0 302 255 * 995 115 0 7 chr15 22598348 22598487 -63097267 - AluSq/x SINE Alu -173 139 2 2499 85 0 3 chr15 22598488 22598818 -63096936 - MER41A LTR ERV1 -225 329 1 3200 163 34 63 chr15 22598990 22599782 -63095972 + L1MB3 LINE L1 4644 5458 -725 809 207 24 12 chr15 22599782 22599946 -63095808 + FAM SINE Alu 1 166 -9 3200 163 34 63 chr15 22599946 22600001 -63095753 + L1MB3 LINE L1 5458 5513 -670 216 0 0 0 chr15 22600001 22600025 -63095729 + (CA)n Simple_repeat Simple_repeat 2 25 0 3200 163 34 63 chr15 22600025 22600099 -63095655 + L1MB3 LINE L1 5513 5588 -595 2080 145 0 0 chr15 22600099 22600396 -63095358 + AluSx SINE Alu 3 299 -13 3200 163 34 63 chr15 22600396 22600762 -63094992 + L1MB3 LINE L1 5588 5899 -284 671 178 67 15 chr15 22600762 22600897 -63094857 + AluJo SINE Alu 2 143 -169 627 280 66 44 chr15 22602476 22602746 -63093008 + LTR33A LTR ERVL 13 288 -235 357 148 9 0 chr15 22602746 22602821 -63092933 - LTR41 LTR ERVL 0 795 701 826 158 0 0 chr15 22602822 22602949 -63092805 + FLAM_C SINE Alu 1 127 -16 1171 241 180 52 chr15 22602966 22603538 -63092216 - LTR41 LTR ERVL -54 719 74 311 167 2 17 chr15 22603538 22603607 -63092147 - MLT1E3 LTR MaLR 0 624 322 1639 236 38 47 chr15 22603707 22603806 -63091948 - L1M4 LINE L1 -1513 4633 4535 1675 164 11 11 chr15 22603806 22604087 -63091667 + AluJo SINE Alu 1 281 -31 1639 236 38 47 chr15 22604087 22604517 -63091237 - L1M4 LINE L1 -1611 4535 4109 * 14541 19 8 1 chr15 22604513 22606443 -63089311 + L1P1 LINE L1 3705 5645 -510 912 221 53 12 chr15 22606563 22606807 -63088947 + AluSq SINE Alu 54 307 -6 542 184 142 0 chr15 22607184 22607325 -63088429 - MIR SINE MIR -27 235 75 276 169 208 26 chr15 22607478 22607555 -63088199 + MIR SINE MIR 20 110 -98 2138 114 3 7 chr15 22607994 22608284 -63087470 - AluSx SINE Alu -23 289 1 296 305 53 15 chr15 22608326 22608457 -63087297 - MER77 LTR ERV1 -62 543 408 532 176 0 0 chr15 22608501 22608586 -63087168 + FRAM SINE Alu 73 157 -19 440 263 12 22 chr15 22608672 22608824 -63086930 - MER21B LTR ERV1 -398 207 17 2357 171 25 78 chr15 22608824 22609208 -63086546 - L1M LINE L1 -801 5345 4942 2237 89 24 0 chr15 22609208 22609501 -63086253 - AluSp SINE Alu -13 300 1 2357 171 25 78 chr15 22609501 22609594 -63086160 - L1M LINE L1 -1204 4942 4846 2105 145 0 0 chr15 22609594 22609898 -63085856 - AluJb SINE Alu -8 304 1 2357 171 25 78 chr15 22609898 22610070 -63085684 - L1M LINE L1 -1300 4846 4747 1668 150 35 3 chr15 22610085 22610372 -63085382 - AluSx SINE Alu -16 296 1 259 317 46 83 chr15 22610629 22610658 -63085096 - L2 LINE L2 -217 3055 3026 2307 79 0 30 chr15 22610658 22611004 -63084750 - AluSx SINE Alu 0 312 1 259 317 46 83 chr15 22611004 22611081 -63084673 - L2 LINE L2 -246 3026 2948 386 209 102 94 chr15 22611081 22611335 -63084419 - MER112 DNA MER1_type 0 256 1 259 317 46 83 chr15 22611335 22611467 -63084287 - L2 LINE L2 -324 2948 2825 285 333 7 28 chr15 22611896 22612037 -63083717 + MIR3 SINE MIR 65 202 -6 796 103 7 97 chr15 22613029 22613174 -63082580 + FLAM_C SINE Alu 1 132 -1 2482 194 88 11 chr15 22613517 22614042 -63081712 - MLT1F1 LTR MaLR -2 565 1 2498 52 0 0 chr15 22614748 22615039 -63080715 + AluY SINE Alu 1 291 -20 2066 143 0 13 chr15 22615290 22615426 -63080328 + AluSx SINE Alu 1 137 -175 2234 92 0 10 chr15 22615426 22615755 -63079999 + AluSq SINE Alu 1 313 0 2066 143 0 13 chr15 22615755 22615925 -63079829 + AluSx SINE Alu 137 303 -9 1959 142 0 19 chr15 22616016 22616325 -63079429 + AluJb SINE Alu 1 303 -9 545 184 0 18 chr15 22616348 22616457 -63079297 - AluJo SINE Alu -1 311 205 783 183 0 0 chr15 22616470 22616596 -63079158 - AluJo SINE Alu -186 126 1 3375 148 11 2 chr15 22616648 22617176 -63078578 + Tigger1 DNA MER2_type 2 534 -1884 385 287 20 13 chr15 22617179 22617335 -63078419 + AluJb SINE Alu 140 254 -48 213 77 77 19 chr15 22617349 22617401 -63078353 + GA-rich Low_complexity Low_complexity 3 57 0 553 174 0 0 chr15 22617570 22617668 -63078086 + AluSg/x SINE Alu 212 309 -1 6309 162 21 0 chr15 22617685 22618735 -63077019 + L1MC1 LINE L1 5254 6325 -8 2343 89 13 19 chr15 22618735 22619048 -63076706 + AluSp SINE Alu 1 311 -2 770 234 103 38 chr15 22619131 22619488 -63076266 + MLT1I LTR MaLR 1 409 0 1734 111 12 95 chr15 22619591 22619736 -63076018 + AluSx SINE Alu 1 106 -206 2884 3 0 0 chr15 22619736 22620038 -63075716 + AluYa5 SINE Alu 1 302 -9 1734 111 12 95 chr15 22620038 22620217 -63075537 + AluSx SINE Alu 106 298 -14 1989 136 7 7 chr15 22620250 22620544 -63075210 + AluJb SINE Alu 1 294 -18 1283 165 4 57 chr15 22620598 22620846 -63074908 + AluJo SINE Alu 5 239 -73 29 61 0 0 chr15 22621249 22621282 -63074472 + AT_rich Low_complexity Low_complexity 1 33 0 355 93 0 0 chr15 22621436 22621490 -63074264 + AluSp/q SINE Alu 246 299 -4 205 171 0 24 chr15 22621613 22621654 -63074100 + GA-rich Low_complexity Low_complexity 5 44 0 743 110 0 0 chr15 22621931 22622031 -63073723 + AluJb SINE Alu 160 259 -53 207 0 0 0 chr15 22622142 22622165 -63073589 + (A)n Simple_repeat Simple_repeat 1 23 0 2134 126 0 16 chr15 22622319 22622629 -63073125 - AluSq SINE Alu -8 305 1 1774 157 61 28 chr15 22622670 22623033 -63072721 - THE1C LTR MaLR 0 375 1 1715 182 48 8 chr15 22623355 22623706 -63072048 - MLT1A1 LTR MaLR 0 365 1 2484 80 3 10 chr15 22623752 22624066 -63071688 - AluSp SINE Alu -1 312 1 5898 113 29 1 chr15 22624254 22625122 -63070632 - L1PA13 LINE L1 0 6163 5272 813 209 10 20 chr15 22625259 22625455 -63070299 - AluSp SINE Alu 0 313 120 22 35 0 0 chr15 22625643 22625672 -63070082 + AT_rich Low_complexity Low_complexity 1 29 0 1086 196 117 32 chr15 22625857 22626138 -63069616 - MLT1A1 LTR MaLR -4 361 57 1446 133 5 5 chr15 22626138 22626348 -63069406 + AluSg/x SINE Alu 86 295 -17 727 149 0 0 chr15 22626684 22626805 -63068949 - AluSg/x SINE Alu -1 311 191 1957 120 11 3 chr15 22626919 22627202 -63068552 + AluSx SINE Alu 23 307 -5 5120 111 0 10 chr15 22627289 22628032 -63067722 - LTR17 LTR ERV1 0 780 1 2010 132 0 39 chr15 22628090 22628401 -63067353 - AluSx SINE Alu -13 299 1 3924 127 52 0 chr15 22628929 22629511 -63066243 + LTR9 LTR ERV1 1 612 0 407 297 54 7 chr15 22629664 22629812 -63065942 - MIR SINE MIR -73 189 35 1933 137 45 3 chr15 22629872 22630164 -63065590 - AluJb SINE Alu -8 304 1 2183 114 0 7 chr15 22630569 22630866 -63064888 - AluSg SINE Alu -15 295 1 30 59 0 0 chr15 22630866 22630917 -63064837 + AT_rich Low_complexity Low_complexity 1 51 0 207 0 0 0 chr15 22631048 22631071 -63064683 + (TG)n Simple_repeat Simple_repeat 2 24 0 2296 114 0 0 chr15 22631154 22631460 -63064294 - AluSg SINE Alu -2 308 3 2173 89 67 8 chr15 22631473 22631841 -63063913 - LTR7 LTR ERV1 0 450 1 330 284 53 68 chr15 22632278 22632468 -63063286 + MIR SINE MIR 30 216 -46 21 36 0 0 chr15 22632484 22632512 -63063242 + AT_rich Low_complexity Low_complexity 1 28 0 1228 274 60 3 chr15 22632882 22633214 -63062540 + MLT1H1 LTR MaLR 12 362 -193 1697 110 73 4 chr15 22633323 22633568 -63062186 + AluSx SINE Alu 37 298 -14 810 207 58 5 chr15 22633568 22633765 -63061989 - L1MC/D LINE L1 -503 5661 5483 1770 188 35 49 chr15 22633783 22634208 -63061546 - L1MC/D LINE L1 -986 5160 4742 728 208 35 74 chr15 22634272 22634503 -63061251 - L1ME2 LINE L1 -127 6037 5816 186 43 0 0 chr15 22634970 22634993 -63060761 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1378 241 34 13 chr15 22636627 22637008 -63058746 - MLT2C1 LTR ERVL -8 389 1 182 300 113 0 chr15 22637671 22637751 -63058003 - L2 LINE L2 -252 3020 2932 363 147 27 13 chr15 22638042 22638117 -63057637 - L1MDa LINE L1 -6188 352 277 1349 147 0 50 chr15 22638166 22638404 -63057350 - AluJo SINE Alu 0 312 87 1785 161 0 38 chr15 22638422 22638738 -63057016 - AluJo SINE Alu -8 304 1 266 236 0 0 chr15 22638745 22638817 -63056937 - L1ME2 LINE L1 -1 6177 6098 2547 63 0 0 chr15 22638818 22639120 -63056634 - AluY SINE Alu -9 302 1 22 0 0 0 chr15 22639120 22639142 -63056612 + AT_rich Low_complexity Low_complexity 1 22 0 291 128 21 0 chr15 22639380 22639427 -63056327 + MER58 DNA MER1_type 2373 2420 0 449 171 0 0 chr15 22639782 22639858 -63055896 + AluSg/x SINE Alu 207 282 -27 2225 121 3 0 chr15 22639896 22640201 -63055553 + AluSx SINE Alu 1 306 -6 320 136 68 17 chr15 22640694 22640753 -63055001 - MER81 DNA DNA -49 65 4 182 286 0 0 chr15 22641529 22641578 -63054176 - MIR SINE MIR -45 217 169 2218 118 0 7 chr15 22642097 22642394 -63053360 - AluSx SINE Alu -17 295 1 198 261 0 76 chr15 22642497 22642589 -63053165 - MIR SINE MIR -54 208 124 1981 146 3 7 chr15 22642904 22643246 -63052508 + AluSq SINE Alu 1 313 0 2102 141 0 0 chr15 22643636 22643948 -63051806 - AluSx SINE Alu 0 312 1 387 0 0 0 chr15 22644344 22644387 -63051367 + (CA)n Simple_repeat Simple_repeat 2 44 0 2139 176 54 54 chr15 22644764 22645201 -63050553 + MLT1D LTR MaLR 1 441 -64 2104 92 3 3 chr15 22645201 22645512 -63050242 + AluY SINE Alu 1 311 0 2139 176 54 54 chr15 22645512 22645574 -63050180 + MLT1D LTR MaLR 440 501 -4 3511 148 28 20 chr15 22645973 22646085 -63049669 - MER41B LTR ERV1 -27 608 498 2538 61 0 0 chr15 22646085 22646381 -63049373 + AluY SINE Alu 2 297 -14 3511 148 28 20 chr15 22646381 22646871 -63048883 - MER41B LTR ERV1 -137 498 1 677 193 29 29 chr15 22647122 22647262 -63048492 + AluJo SINE Alu 2 141 -171 748 161 7 36 chr15 22647606 22647743 -63048011 + FLAM_C SINE Alu 1 133 0 2108 91 46 3 chr15 22647883 22648168 -63047586 - AluSx SINE Alu -15 297 1 2529 112 76 217 chr15 22648188 22648312 -63047442 - MER4D LTR ERV1 0 832 692 4395 116 8 0 chr15 22648312 22648941 -63046813 - MER41B LTR ERV1 -1 634 1 2529 112 76 217 chr15 22648941 22649085 -63046669 - MER4D LTR ERV1 -140 692 529 722 193 0 14 chr15 22649085 22649225 -63046529 + FLAM_C SINE Alu 6 143 0 2529 112 76 217 chr15 22649225 22649300 -63046454 - MER4D LTR ERV1 -303 529 445 1944 118 0 49 chr15 22649300 22649605 -63046149 - AluSq SINE Alu -23 290 1 2529 112 76 217 chr15 22649605 22649616 -63046138 - MER4D LTR ERV1 -387 445 434 2172 118 3 3 chr15 22649616 22649912 -63045842 - AluSp SINE Alu -16 297 2 2529 112 76 217 chr15 22649912 22650464 -63045290 - MER4D LTR ERV1 -398 434 1 1021 227 140 12 chr15 22650584 22650906 -63044848 - MLT1D LTR MaLR -13 492 130 677 111 10 0 chr15 22650907 22651006 -63044748 - AluSg/x SINE Alu -20 290 191 540 195 70 8 chr15 22651006 22651134 -63044620 - MLT1D LTR MaLR -367 138 3 1228 128 41 0 chr15 22652632 22652828 -63042926 + MER105 DNA DNA 1 204 0 1119 237 128 11 chr15 22653578 22653936 -63041818 + L1MC4a LINE L1 5511 5910 -1898 196 333 125 61 chr15 22654131 22654395 -63041359 + L2 LINE L2 2992 3272 0 189 0 0 0 chr15 22654851 22654872 -63040882 + (TC)n Simple_repeat Simple_repeat 2 22 0 29 0 0 0 chr15 22655006 22655035 -63040719 + AT_rich Low_complexity Low_complexity 1 29 0 2114 143 0 0 chr15 22655086 22655380 -63040374 - AluSx SINE Alu -13 299 6 24 0 0 0 chr15 22656090 22656114 -63039640 + AT_rich Low_complexity Low_complexity 1 24 0 1093 134 0 0 chr15 22656117 22656274 -63039480 - AluJo/FRAM SINE Alu -9 293 137 492 173 0 0 chr15 22656276 22656351 -63039403 - AluJ/FLAM SINE Alu -236 76 2 815 50 0 0 chr15 22656661 22656760 -63038994 + HY3 scRNA scRNA 1 99 -2 21 0 0 0 chr15 22656760 22656781 -63038973 + AT_rich Low_complexity Low_complexity 1 21 0 665 126 87 0 chr15 22657791 22657894 -63037860 + AluSp SINE Alu 2 113 -200 2337 211 26 4 chr15 22658016 22658524 -63037230 - L1M4 LINE L1 -2022 4124 3606 304 185 0 19 chr15 22658525 22658579 -63037175 - MER44D DNA MER2_type 0 609 557 * 572 136 271 0 chr15 22658575 22658715 -63037039 - MER46B DNA MER2_type -182 54 2 * 1405 138 38 50 chr15 22658715 22658973 -63036781 - MER44D DNA MER2_type -80 529 5 1488 247 44 7 chr15 22658977 22659430 -63036324 - L1M4 LINE L1 -2540 3606 3137 216 0 0 0 chr15 22659543 22659567 -63036187 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 1619 158 14 64 chr15 22659574 22659871 -63035883 - AluJo SINE Alu -30 282 1 409 299 78 54 chr15 22660168 22660335 -63035419 - MIR3 SINE MIR -32 176 6 1886 156 0 17 chr15 22661108 22661410 -63034344 + AluJo SINE Alu 6 302 -10 734 188 0 15 chr15 22661762 22661895 -63033859 + FLAM_C SINE Alu 1 131 -2 2385 95 0 16 chr15 22663250 22663566 -63032188 - AluSq SINE Alu -2 311 1 728 178 0 0 chr15 22663663 22663781 -63031973 - FLAM_C SINE Alu -24 119 2 23 0 0 0 chr15 22664401 22664424 -63031330 + AT_rich Low_complexity Low_complexity 1 23 0 2421 84 0 3 chr15 22665169 22665468 -63030286 + AluSc SINE Alu 1 298 -11 24 32 0 0 chr15 22665956 22665987 -63029767 + AT_rich Low_complexity Low_complexity 1 31 0 233 115 39 58 chr15 22666235 22666287 -63029467 + MER5B DNA MER1_type 126 176 -2 187 256 181 45 chr15 22666306 22666439 -63029315 - MER5B DNA MER1_type -4 174 24 863 200 0 0 chr15 22666860 22667029 -63028725 + FRAM SINE Alu 8 176 0 2301 97 7 10 chr15 22667574 22667882 -63027872 + AluSx SINE Alu 3 309 -3 265 86 0 78 chr15 22667890 22668134 -63027620 + AluSx SINE Alu 1 318 0 21 0 0 0 chr15 22668331 22668352 -63027402 + AT_rich Low_complexity Low_complexity 1 21 0 1135 57 0 0 chr15 22668491 22668631 -63027123 - AluY SINE Alu -13 298 159 217 67 22 22 chr15 22668755 22668800 -63026954 + (TATAA)n Simple_repeat Simple_repeat 5 49 0 634 77 28 44 chr15 22668802 22668984 -63026770 + (TA)n Simple_repeat Simple_repeat 2 180 0 209 135 58 10 chr15 22669126 22669224 -63026530 + (TA)n Simple_repeat Simple_repeat 1 104 0 2372 65 0 14 chr15 22669224 22669518 -63026236 - AluY SINE Alu -21 290 1 737 162 0 0 chr15 22669562 22669679 -63026075 - AluJb SINE Alu -194 118 2 948 267 89 11 chr15 22669759 22670040 -63025714 - LTR16B LTR ERVL -161 303 1 540 230 155 0 chr15 22671174 22671348 -63024406 + MIR SINE MIR 54 254 -8 1746 124 69 4 chr15 22672460 22672735 -63023019 + AluSg SINE Alu 1 293 -17 2062 125 38 3 chr15 22673286 22673606 -63022148 + MLT2D LTR ERVL 1 331 -83 1170 78 13 0 chr15 22673665 22673819 -63021935 + AluSc SINE Alu 149 304 -5 367 230 36 50 chr15 22673862 22674001 -63021753 - LTR47B LTR ERVL -27 416 280 391 307 22 17 chr15 22674895 22675074 -63020680 + CT-rich Low_complexity Low_complexity 1 180 0 308 185 31 31 chr15 22675108 22675238 -63020516 + CT-rich Low_complexity Low_complexity 4 133 0 209 180 20 0 chr15 22675246 22675296 -63020458 + C-rich Low_complexity Low_complexity 5 55 0 * 663 150 42 12 chr15 22675292 22675459 -63020295 + CT-rich Low_complexity Low_complexity 4 175 0 224 71 0 0 chr15 22675459 22675487 -63020267 + (TCCCC)n Simple_repeat Simple_repeat 4 31 0 873 141 13 47 chr15 22675490 22675639 -63020115 - FRAM SINE Alu -40 136 1 2285 110 3 3 chr15 22676258 22676567 -63019187 - AluSg SINE Alu -1 309 1 195 338 100 25 chr15 22676674 22676914 -63018840 - L2 LINE L2 0 3272 3015 1163 137 0 27 chr15 22677454 22677637 -63018117 + AluSg/x SINE Alu 111 288 -24 243 0 0 0 chr15 22677650 22677677 -63018077 + (TA)n Simple_repeat Simple_repeat 2 28 0 270 188 0 0 chr15 22677802 22677850 -63017904 + MER20B DNA MER1_type 735 782 -1 1586 167 36 102 chr15 22679222 22679295 -63016459 - Charlie4a DNA MER1_type -1456 505 429 2094 92 25 0 chr15 22679295 22679578 -63016176 - AluSx SINE Alu -22 290 1 1586 167 36 102 chr15 22679578 22679845 -63015909 - Charlie4a DNA MER1_type -1532 429 202 2421 95 0 0 chr15 22679845 22680151 -63015603 - AluSc SINE Alu -3 306 1 1586 167 36 102 chr15 22680151 22680282 -63015472 - Charlie4a DNA MER1_type -1759 202 64 1553 144 11 23 chr15 22680438 22680701 -63015053 - AluSx SINE Alu -16 296 37 212 229 21 0 chr15 22680734 22680782 -63014972 + MIR SINE MIR 106 154 -108 446 149 0 0 chr15 22681694 22681761 -63013993 + MLT1B LTR MaLR 28 94 -296 745 161 0 17 chr15 22681769 22681887 -63013867 + FLAM_A SINE Alu 8 123 -19 2014 153 0 13 chr15 22681892 22682206 -63013548 + AluSx SINE Alu 1 310 -2 1407 214 25 18 chr15 22682210 22682495 -63013259 + MLT1B LTR MaLR 104 390 0 347 182 149 25 chr15 22683428 22683549 -63012205 + MIR SINE MIR 119 254 -8 187 396 10 0 chr15 22683729 22683825 -63011929 - MIR3 SINE MIR -3 205 109 230 309 15 0 chr15 22685491 22685559 -63010195 + L2 LINE L2 3188 3256 -16 841 288 105 16 chr15 22685668 22685974 -63009780 - MER102b DNA MER1_type -7 334 2 190 216 0 0 chr15 22686609 22686646 -63009108 + L2 LINE L2 3267 3303 -10 2286 112 0 0 chr15 22686650 22686946 -63008808 - AluY SINE Alu -15 296 1 2354 86 7 7 chr15 22687536 22687837 -63007917 - AluSx SINE Alu -11 301 1 2134 217 46 37 chr15 22687956 22688518 -63007236 - MER74B LTR ERVL 0 622 56 1341 233 90 33 chr15 22688799 22689220 -63006534 + MLT2B1 LTR ERVL 1 445 -75 596 179 41 48 chr15 22689462 22689607 -63006147 + MER69 DNA AcHobo 2383 2526 0 314 230 58 35 chr15 22689822 22689909 -63005845 + MIR SINE MIR 56 144 -64 567 241 73 35 chr15 22690156 22690388 -63005366 - L1MC5 LINE L1 -56 7905 7665 1835 100 4 0 chr15 22690458 22690697 -63005057 + AluSq SINE Alu 41 280 -33 189 0 0 0 chr15 22690703 22690724 -63005030 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2173 118 0 0 chr15 22690780 22691076 -63004678 - AluSg SINE Alu -14 296 1 2216 107 0 23 chr15 22692074 22692383 -63003371 - AluSx SINE Alu -10 302 1 1740 146 46 17 chr15 22692441 22692743 -63003011 - AluSx SINE Alu -1 311 1 493 216 0 45 chr15 22692743 22692854 -63002900 - AluSg/x SINE Alu -20 290 185 3375 144 204 30 chr15 22692854 22693554 -63002200 - LTR12 LTR ERV1 0 826 5 2346 183 30 27 chr15 22693570 22694170 -63001584 - pTR5 LTR ERV1 -1094 1344 743 1198 141 0 45 chr15 22694170 22694369 -63001385 - AluJo SINE Alu -122 190 1 216 97 0 0 chr15 22694446 22694477 -63001277 + (TTC)n Simple_repeat Simple_repeat 3 33 0 1861 145 54 7 chr15 22694479 22694775 -63000979 - AluSx SINE Alu -2 310 1 228 35 0 0 chr15 22694927 22694956 -63000798 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1393 169 0 49 chr15 22694956 22695240 -63000514 - AluSx SINE Alu -32 280 11 243 0 0 0 chr15 22695241 22695268 -63000486 + (T)n Simple_repeat Simple_repeat 1 27 0 1957 117 52 7 chr15 22695293 22695583 -63000171 + AluSx SINE Alu 1 303 -9 1214 209 48 84 chr15 22695740 22696436 -62999318 - MER21B LTR ERV1 -125 738 1 1769 146 75 0 chr15 22696459 22696739 -62999015 + AluSx SINE Alu 1 301 -11 3660 122 80 16 chr15 22697208 22697783 -62997971 - LTR9 LTR ERV1 0 612 1 2351 89 3 13 chr15 22698287 22698590 -62997164 - AluSg SINE Alu -10 300 1 538 317 37 0 chr15 22698675 22698839 -62996915 + MIR SINE MIR 1 170 -92 1525 186 38 7 chr15 22698907 22699197 -62996557 - AluJb SINE Alu -13 299 1 264 239 269 37 chr15 22699202 22699398 -62996356 - L1ME4a LINE L1 -21 6100 5951 2246 121 0 9 chr15 22699398 22699713 -62996041 - AluSx SINE Alu 0 312 1 264 239 269 37 chr15 22699713 22699813 -62995941 - L1ME4a LINE L1 -170 5951 5735 368 198 18 36 chr15 22699940 22700051 -62995703 - L1ME4a LINE L1 -401 5720 5612 339 65 0 0 chr15 22701789 22701835 -62993919 + (TG)n Simple_repeat Simple_repeat 2 47 0 2035 200 10 45 chr15 22701989 22702473 -62993281 - MLT1C LTR MaLR 0 467 1 2208 112 0 29 chr15 22703605 22703919 -62991835 + AluSx SINE Alu 2 306 -6 195 278 56 28 chr15 22705545 22705617 -62990137 - L3 LINE CR1 -4 1573 1500 2154 117 3 3 chr15 22705633 22705923 -62989831 - AluSx SINE Alu -22 290 1 186 293 12 12 chr15 22706209 22706291 -62989463 + MIR SINE MIR 84 165 -97 2011 125 24 14 chr15 22707622 22707917 -62987837 - AluSq SINE Alu -15 298 1 313 232 105 0 chr15 22707928 22708023 -62987731 - MIR SINE MIR -73 189 85 240 224 0 17 chr15 22708354 22708412 -62987342 + CT-rich Low_complexity Low_complexity 2 58 0 21 36 0 0 chr15 22708823 22708851 -62986903 + AT_rich Low_complexity Low_complexity 1 28 0 780 283 69 12 chr15 22709207 22709337 -62986417 - MIR SINE MIR 0 262 141 1236 121 16 0 chr15 22709337 22709519 -62986235 - MER5A DNA MER1_type -4 185 1 780 283 69 12 chr15 22709519 22709635 -62986119 - MIR SINE MIR -121 141 2 331 286 92 74 chr15 22710372 22710589 -62985165 - L1ME4a LINE L1 -21 6100 5880 2240 93 0 10 chr15 22710616 22710916 -62984838 + AluSp SINE Alu 2 298 -15 2027 123 0 16 chr15 22711844 22712160 -62983594 - AluSx SINE Alu -1 311 1 391 270 0 0 chr15 22712165 22712254 -62983500 + L2 LINE L2 3225 3313 0 2290 93 0 0 chr15 22713220 22713522 -62982232 + AluSx SINE Alu 1 302 -10 251 198 54 90 chr15 22713522 22713633 -62982121 - L1MC4 LINE L1 -14 8028 7922 327 146 0 0 chr15 22713636 22713691 -62982063 + (TTCC)n Simple_repeat Simple_repeat 2 56 0 2788 231 53 56 chr15 22713742 22714153 -62981601 - L1MC4 LINE L1 -166 7876 7465 1871 124 3 24 chr15 22714153 22714468 -62981286 - AluSx SINE Alu 0 309 1 2788 231 53 56 chr15 22714468 22715105 -62980649 - L1MC4 LINE L1 -577 7465 6830 574 251 86 6 chr15 22715707 22715870 -62979884 - MER5B DNA MER1_type -2 176 1 1597 88 5 0 chr15 22715883 22716098 -62979656 + AluSg1 SINE Alu 1 216 -93 412 286 11 0 chr15 22716098 22716189 -62979565 - MIR3 SINE MIR -25 183 92 488 308 38 27 chr15 22716236 22716421 -62979333 + MER5A DNA MER1_type 1 187 -2 1631 173 3 25 chr15 22716537 22716855 -62978899 - AluJb SINE Alu -1 311 1 424 220 76 138 chr15 22716960 22717110 -62978644 - MER20B DNA MER1_type -475 308 183 1566 173 0 69 chr15 22717110 22717445 -62978309 - AluJo SINE Alu 0 312 1 424 220 76 138 chr15 22717445 22717585 -62978169 - MER20B DNA MER1_type -600 183 36 2117 87 7 7 chr15 22717747 22718033 -62977721 + AluSg SINE Alu 1 286 -24 255 170 0 0 chr15 22718033 22718080 -62977674 + GA-rich Low_complexity Low_complexity 2 48 0 271 314 0 66 chr15 22718253 22718374 -62977380 - L2 LINE L2 0 3272 3160 2728 85 3 0 chr15 22718952 22719306 -62976448 - THE1A LTR MaLR 0 355 1 299 258 45 0 chr15 22719518 22719585 -62976169 - LTR67 LTR ERVL -4 553 480 2124 110 3 0 chr15 22719585 22719885 -62975869 + AluSg1 SINE Alu 1 301 -8 299 258 45 0 chr15 22719885 22719906 -62975848 - LTR67 LTR ERVL -77 480 461 1782 136 3 44 chr15 22720368 22720690 -62975064 + AluSx SINE Alu 1 310 0 1752 171 7 3 chr15 22720916 22721225 -62974529 + AluJb SINE Alu 1 310 -2 1398 175 0 103 chr15 22721428 22721593 -62974161 + AluJb SINE Alu 1 119 -193 2006 147 0 0 chr15 22721593 22721899 -62973855 + AluSx SINE Alu 1 306 -6 1398 175 0 103 chr15 22721899 22722053 -62973701 + AluJb SINE Alu 119 287 -25 4452 148 22 12 chr15 22722060 22722819 -62972935 + L1M4c LINE L1 265 1031 -5353 366 236 209 0 chr15 22722819 22722929 -62972825 + FLAM_A SINE Alu 1 133 0 384 271 23 31 chr15 22722929 22723058 -62972696 + L1M4c LINE L1 949 1076 -5308 1126 112 41 6 chr15 22723058 22723227 -62972527 + AluSq SINE Alu 1 175 -138 1947 226 78 35 chr15 22723328 22723863 -62971891 - MLT1E1 LTR MaLR -91 563 6 250 204 0 19 chr15 22723864 22723918 -62971836 - LTR41 LTR ERVL -720 53 1 * 396 227 191 0 chr15 22723918 22724026 -62971728 + LTR33A LTR ERVL 284 412 -111 917 318 84 5 chr15 22724236 22724629 -62971125 - HERV16 LTR ERVL -2229 3535 3112 1311 291 45 19 chr15 22724667 22725086 -62970668 - HERV16 LTR ERVL -1990 3006 2577 1422 173 0 11 chr15 22725086 22725358 -62970396 - AluJb SINE Alu 0 312 44 686 298 133 19 chr15 22725786 22726101 -62969653 - HERV16 LTR ERVL -3915 1081 731 23 86 0 0 chr15 22726158 22726216 -62969538 + AT_rich Low_complexity Low_complexity 1 58 0 599 356 0 0 chr15 22726681 22726869 -62968885 - HERV16 LTR ERVL -4335 661 474 1442 151 111 15 chr15 22726871 22727142 -62968612 - AluJb SINE Alu -15 297 1 2137 100 0 40 chr15 22727151 22727472 -62968282 - AluSg SINE Alu -2 308 1 339 298 14 28 chr15 22727475 22727616 -62968138 - HERV16 LTR ERVL -4507 489 351 2140 128 112 11 chr15 22727616 22727992 -62967762 - MSTA LTR MaLR 0 428 15 1231 102 0 11 chr15 22728003 22728179 -62967575 - AluSq SINE Alu -139 174 1 289 353 101 19 chr15 22728179 22728433 -62967321 + L2 LINE L2 2776 3051 -221 2239 153 79 9 chr15 22728563 22728994 -62966760 - LOR1b LTR ERV1 0 461 1 740 276 130 21 chr15 22729161 22729491 -62966263 - MLT1J LTR MaLR -145 366 1 722 171 0 0 chr15 22729958 22730069 -62965685 - FLAM_C SINE Alu -32 111 1 4983 126 26 97 chr15 22730537 22730683 -62965071 + L1M4c LINE L1 878 1033 -5351 366 236 209 0 chr15 22730683 22730793 -62964961 + FLAM_A SINE Alu 1 133 0 4983 126 26 97 chr15 22730793 22730918 -62964836 + L1M4c LINE L1 1033 1165 -5219 1712 141 31 10 chr15 22730918 22731208 -62964546 + AluSx SINE Alu 1 296 -16 4983 126 26 97 chr15 22731208 22732070 -62963684 + L1M4c LINE L1 1165 1932 -4452 772 100 7 100 chr15 22732070 22732125 -62963629 + MSTB1 LTR MaLR 1 60 -372 1848 153 3 0 chr15 22732125 22732413 -62963341 + AluSx SINE Alu 3 291 -21 772 100 7 100 chr15 22732413 22732497 -62963257 + MSTB1 LTR MaLR 60 127 -305 11312 61 14 1 chr15 22732548 22732926 -62962828 - L1PA6 LINE L1 0 6154 5783 2044 85 4 0 chr15 22732926 22733196 -62962558 - AluY SINE Alu -6 305 35 11312 61 14 1 chr15 22733196 22735061 -62960693 - L1PA6 LINE L1 -371 5783 3903 2095 99 20 3 chr15 22735112 22735415 -62960339 - AluSp SINE Alu -5 308 1 432 332 78 0 chr15 22735722 22735939 -62959815 - LTR16B LTR ERVL 0 464 231 683 212 133 0 chr15 22735976 22736127 -62959627 + MER45A DNA AcHobo 1 171 -7 690 253 40 6 chr15 22736138 22736312 -62959442 - LTR16B LTR ERVL -284 180 1 1627 305 26 67 chr15 22736330 22737409 -62958345 - ERVL LTR ERVL -17 5383 4428 969 321 13 13 chr15 22737414 22737732 -62958022 + HERV16 LTR ERVL 2607 2924 -2072 197 266 0 96 chr15 22737732 22737826 -62957928 - L3 LINE CR1 -1367 210 126 461 245 19 0 chr15 22737828 22737934 -62957820 + HERV16 LTR ERVL 3060 3167 -2597 1340 263 47 32 chr15 22737983 22738147 -62957607 - HERV16 LTR ERVL -2896 2100 1940 2215 80 10 10 chr15 22738147 22738446 -62957308 - AluSx SINE Alu -13 299 1 1340 263 47 32 chr15 22738446 22738688 -62957066 - HERV16 LTR ERVL -3056 1940 1688 336 284 7 92 chr15 22738722 22738863 -62956891 + MER58A DNA MER1_type 1 129 0 2078 115 0 29 chr15 22739751 22740064 -62955690 + AluSx SINE Alu 2 305 -7 223 278 56 28 chr15 22741689 22741761 -62953993 - L3 LINE CR1 -4 1573 1500 2029 117 3 3 chr15 22741777 22742067 -62953687 - AluSx SINE Alu -22 290 1 1730 170 26 7 chr15 22742235 22742541 -62953213 + AluJo SINE Alu 1 312 0 757 237 7 75 chr15 22742597 22742876 -62952878 - L2 LINE L2 0 3313 3054 275 336 56 0 chr15 22742886 22742993 -62952761 - L3 LINE CR1 -127 1450 1338 984 307 113 38 chr15 22743000 22743557 -62952197 - L3 LINE CR1 -165 1412 814 34 0 0 0 chr15 22743575 22743609 -62952145 + AT_rich Low_complexity Low_complexity 1 34 0 325 336 229 29 chr15 22744094 22744336 -62951418 - L3 LINE CR1 -762 815 623 2276 97 0 0 chr15 22744336 22744635 -62951119 - AluSx SINE Alu -13 299 1 325 336 229 29 chr15 22744635 22744737 -62951017 - L3 LINE CR1 -954 623 402 1200 269 113 26 chr15 22744765 22745200 -62950554 + L2 LINE L2 2798 3268 -4 749 176 13 39 chr15 22745200 22745353 -62950401 + MIR SINE MIR 114 262 0 216 203 51 51 chr15 22745380 22745439 -62950315 - L2 LINE L2 -17 3296 3238 309 109 0 0 chr15 22745474 22745520 -62950234 + (TCCCC)n Simple_repeat Simple_repeat 5 50 0 1374 146 4 0 chr15 22745622 22745848 -62949906 + AluSg/x SINE Alu 82 308 -2 306 243 103 9 chr15 22745848 22745955 -62949799 + MER20B DNA MER1_type 406 522 -261 1898 134 0 16 chr15 22746018 22746323 -62949431 + AluSx SINE Alu 1 300 -12 268 188 0 0 chr15 22746466 22746514 -62949240 + MER20B DNA MER1_type 735 782 -1 1546 175 3 18 chr15 22747477 22747763 -62947991 - AluJb SINE Alu -30 282 1 1462 136 65 39 chr15 22747974 22748253 -62947501 + AluJo SINE Alu 1 286 -26 2051 125 3 0 chr15 22749793 22750090 -62945664 + AluSx SINE Alu 1 298 -14 428 269 67 8 chr15 22750752 22750886 -62944868 - L1MC4 LINE L1 0 8042 7901 250 176 29 0 chr15 22750886 22750940 -62944814 + (TATG)n Simple_repeat Simple_repeat 2 60 -11 2084 116 0 22 chr15 22750940 22751260 -62944494 - AluSq SINE Alu 0 313 1 250 176 29 0 chr15 22751260 22751273 -62944481 + (TATG)n Simple_repeat Simple_repeat 60 71 0 731 269 31 22 chr15 22751274 22751640 -62944114 - L1MD3 LINE L1 -204 7791 7342 189 0 0 0 chr15 22751640 22751661 -62944093 + (TC)n Simple_repeat Simple_repeat 2 22 0 731 269 31 22 chr15 22751661 22751733 -62944021 - L1MD3 LINE L1 -653 7342 7272 235 317 29 0 chr15 22751999 22752103 -62943651 - L1MD3 LINE L1 -2013 5795 5689 424 28 19 271 chr15 22752113 22752220 -62943534 - MADE1 DNA Mariner 0 80 1 1594 180 13 36 chr15 22752887 22753193 -62942561 - AluJo SINE Alu -13 299 1 25 0 0 0 chr15 22753195 22753220 -62942534 + AT_rich Low_complexity Low_complexity 1 25 0 2092 107 0 0 chr15 22753220 22753501 -62942253 - AluSx SINE Alu -31 281 1 261 264 19 0 chr15 22753594 22753647 -62942107 + MER58 DNA MER1_type 7 60 -281 * 350 143 286 10 chr15 22753646 22753744 -62942010 + MER58 DNA MER1_type 2296 2420 0 1752 133 35 3 chr15 22753863 22754149 -62941605 - AluSg SINE Alu -15 295 1 1800 133 54 0 chr15 22754179 22754457 -62941297 - AluSx SINE Alu -15 297 5 244 268 91 50 chr15 22754483 22754681 -62941073 + L1MC5 LINE L1 7615 7820 -141 228 86 0 0 chr15 22754781 22754816 -62940938 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 278 256 0 0 chr15 22754839 22754925 -62940829 + (TA)n Simple_repeat Simple_repeat 2 87 0 2343 86 3 3 chr15 22755549 22755862 -62939892 - AluSp SINE Alu 0 313 1 2122 113 0 7 chr15 22756467 22756769 -62938985 - AluSx SINE Alu -12 300 1 273 279 49 0 chr15 22756805 22756866 -62938888 + MIR SINE MIR 11 74 -188 383 204 150 84 chr15 22756928 22757095 -62938659 + MIR SINE MIR 72 249 -13 1838 120 57 7 chr15 22757132 22757415 -62938339 - AluSg SINE Alu -13 297 1 1174 157 27 49 chr15 22757494 22757717 -62938037 + MER20 DNA MER1_type 1 218 -1 190 253 36 48 chr15 22757808 22757891 -62937863 - MIR3 SINE MIR -113 95 14 1623 258 46 2 chr15 22758534 22758968 -62936786 + LTR16B LTR ERVL 5 457 -7 2444 55 0 0 chr15 22759254 22759546 -62936208 - AluY SINE Alu -15 296 5 471 257 0 18 chr15 22759662 22759771 -62935983 - L2 LINE L2 0 3313 3207 651 215 23 0 chr15 22759955 22760085 -62935669 - MER94 DNA DNA 0 134 2 2033 131 0 10 chr15 22761158 22761470 -62934284 - AluSx SINE Alu -3 309 1 1639 123 70 42 chr15 22761891 22762176 -62933578 - AluSx SINE Alu -19 293 1 379 269 129 26 chr15 22762866 22763059 -62932695 + MIR SINE MIR 21 233 -29 365 336 25 0 chr15 22763288 22763407 -62932347 + MIR SINE MIR 2 123 -139 972 189 0 0 chr15 22763407 22763576 -62932178 - AluSg/x SINE Alu -10 302 134 543 92 0 0 chr15 22763585 22763672 -62932082 + (CCTG)n Simple_repeat Simple_repeat 2 88 0 1445 145 40 0 chr15 22763672 22763910 -62931844 - AluSq SINE Alu -7 306 56 546 211 8 17 chr15 22763910 22764152 -62931602 + CT-rich Low_complexity Low_complexity 1 239 0 212 163 0 20 chr15 22764177 22764226 -62931528 + CT-rich Low_complexity Low_complexity 1 48 0 357 281 0 11 chr15 22764233 22764245 -62931509 + MIR SINE MIR 109 120 -142 1477 188 31 3 chr15 22764245 22764533 -62931221 - AluJo SINE Alu 0 312 17 357 281 0 11 chr15 22764533 22764609 -62931145 + MIR SINE MIR 120 196 -66 1816 102 6 80 chr15 22764885 22765199 -62930555 + AluSx SINE Alu 1 291 -21 888 251 21 0 chr15 22765520 22765711 -62930043 - MLT1K LTR MaLR -3 585 391 1952 122 14 3 chr15 22765713 22766008 -62929746 - AluSx SINE Alu -14 298 1 473 193 9 37 chr15 22766198 22766307 -62929447 + L2 LINE L2 3207 3312 -1 248 266 62 62 chr15 22766425 22766538 -62929216 - L2 LINE L2 -258 3014 2902 855 226 33 24 chr15 22766622 22766834 -62928920 + LTR33 LTR ERVL 19 232 -289 674 174 38 136 chr15 22766835 22766876 -62928878 + MER5C DNA MER1_type 62 105 -219 2059 138 0 3 chr15 22766876 22767188 -62928566 + AluSx SINE Alu 1 311 -1 674 174 38 136 chr15 22767188 22767252 -62928502 + MER5C DNA MER1_type 105 174 -150 1983 140 46 17 chr15 22767252 22767601 -62928153 + MER46B DNA MER2_type 3 236 0 674 174 38 136 chr15 22767601 22767781 -62927973 + MER5C DNA MER1_type 174 320 -4 1155 204 23 9 chr15 22768285 22768505 -62927249 + MER58A DNA MER1_type 2 224 0 1600 217 21 24 chr15 22769905 22770278 -62925476 + MLT1A2 LTR MaLR 1 372 -2 22 0 0 0 chr15 22770585 22770607 -62925147 + AT_rich Low_complexity Low_complexity 1 22 0 404 325 84 10 chr15 22770647 22770971 -62924783 - MLT1K LTR MaLR -114 474 81 200 262 229 16 chr15 22771046 22771168 -62924586 - L2 LINE L2 0 3272 3125 342 241 0 64 chr15 22771984 22772171 -62923583 + C-rich Low_complexity Low_complexity 5 179 0 22 0 0 0 chr15 22772183 22772205 -62923549 + GC_rich Low_complexity Low_complexity 1 22 0 481 302 109 5 chr15 22772691 22772883 -62922871 - MIR SINE MIR -2 260 49 269 290 19 9 chr15 22772985 22773092 -62922662 + CT-rich Low_complexity Low_complexity 1 108 0 1877 115 3 48 chr15 22773512 22773682 -62922072 - AluSx SINE Alu -12 300 149 1767 113 55 52 chr15 22773682 22773991 -62921763 - AluSg SINE Alu 0 310 1 1877 115 3 48 chr15 22773991 22774134 -62921620 - AluSx SINE Alu -163 149 1 192 308 96 19 chr15 22774374 22774478 -62921276 - MER5B DNA MER1_type -3 175 64 1511 324 73 23 chr15 22774628 22775018 -62920736 + ERVL LTR ERVL 3722 4091 -1673 4488 98 31 0 chr15 22775018 22775632 -62920122 - MER41B LTR ERV1 0 635 3 1511 324 73 23 chr15 22775632 22776120 -62919634 + ERVL LTR ERVL 4091 4644 -1120 197 303 15 15 chr15 22776296 22776362 -62919392 + MER5B DNA MER1_type 113 178 0 236 185 62 74 chr15 22776554 22776635 -62919119 + MIR SINE MIR 183 262 0 410 224 24 48 chr15 22776795 22776920 -62918834 - L1MC4 LINE L1 0 8042 7921 2147 82 7 3 chr15 22776928 22777221 -62918533 - AluSq SINE Alu -19 294 1 323 289 22 11 chr15 22777267 22777357 -62918397 - L1MC4 LINE L1 -1336 6706 6616 945 263 43 40 chr15 22777470 22777820 -62917934 - L1MC4 LINE L1 -225 7817 7467 266 287 98 18 chr15 22778189 22778327 -62917427 - MIR SINE MIR -93 169 20 2419 80 3 0 chr15 22778465 22778776 -62916978 - AluSp SINE Alu -1 312 1 538 241 32 45 chr15 22778875 22779091 -62916663 - MLT1B LTR MaLR -165 263 1 2156 226 91 24 chr15 22779116 22779734 -62916020 - L1MC4 LINE L1 -524 7518 6860 387 191 21 0 chr15 22779734 22779828 -62915926 - L1MC4 LINE L1 -950 7092 6997 577 149 14 28 chr15 22780089 22780230 -62915524 + CT-rich Low_complexity Low_complexity 4 142 0 283 327 9 19 chr15 22780381 22780488 -62915266 + G-rich Low_complexity Low_complexity 2 107 0 349 279 22 45 chr15 22780578 22780757 -62914997 + GA-rich Low_complexity Low_complexity 1 175 0 1093 63 0 53 chr15 22780971 22781028 -62914726 + (TTCC)n Simple_repeat Simple_repeat 1 234 0 1093 63 0 53 chr15 22781028 22781218 -62914536 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 643 267 91 24 chr15 22781278 22781488 -62914266 - L2 LINE L2 -17 3296 3073 185 75 75 0 chr15 22781797 22781850 -62913904 + (TA)n Simple_repeat Simple_repeat 2 58 0 519 143 0 38 chr15 22782195 22782300 -62913454 - L1PA11 LINE L1 -3 6171 6071 229 143 41 20 chr15 22783788 22783837 -62911917 - MSTC LTR MaLR 0 428 379 474 306 47 30 chr15 22784351 22784511 -62911243 + MLT1J2 LTR MaLR 1 168 -282 1600 144 125 44 chr15 22784511 22784872 -62910882 + MLT1B LTR MaLR 1 390 0 474 306 47 30 chr15 22784872 22784946 -62910808 + MLT1J2 LTR MaLR 168 239 -211 501 288 49 6 chr15 22785812 22785975 -62909779 - MER117 DNA MER1_type -26 171 2 405 119 0 0 chr15 22786257 22786324 -62909430 - Alu SINE Alu -12 300 234 297 0 0 0 chr15 22786330 22786356 -62909398 + (TA)n Simple_repeat Simple_repeat 1 59 0 297 0 0 0 chr15 22786356 22786389 -62909365 + (TA)n Simple_repeat Simple_repeat 1 33 0 1955 153 3 3 chr15 22786472 22786780 -62908974 + AluJb SINE Alu 1 308 -4 2000 133 0 3 chr15 22786910 22787204 -62908550 - AluSx SINE Alu -19 293 1 343 293 202 43 chr15 22787757 22788273 -62907481 + L1MEd LINE L1 816 1287 -1203 242 182 0 0 chr15 22788967 22789011 -62906743 - L2 LINE L2 -1904 1410 1367 2075 113 10 3 chr15 22790266 22790575 -62905179 + AluSp SINE Alu 1 311 -2 1464 214 104 24 chr15 22790623 22791044 -62904710 + MSTB2 LTR MaLR 3 457 0 180 263 0 0 chr15 22791789 22791827 -62903927 - MIR SINE MIR -149 113 76 1763 219 87 57 chr15 22792233 22792732 -62903022 + MLT1E LTR MaLR 2 522 -71 2336 86 3 0 chr15 22792732 22793036 -62902718 - AluSc SINE Alu -4 305 1 1763 219 87 57 chr15 22793036 22793111 -62902643 + MLT1E LTR MaLR 522 593 0 410 295 141 7 chr15 22793873 22794022 -62901732 + MIR SINE MIR 11 179 -83 324 329 37 19 chr15 22794122 22794283 -62901471 - L2 LINE L2 -558 2756 2593 3159 193 63 19 chr15 22794315 22795041 -62900713 - L1MC4 LINE L1 -8 8034 7277 239 213 295 0 chr15 22795249 22795310 -62900444 - MIR3 SINE MIR -49 159 81 2087 181 16 5 chr15 22795428 22795815 -62899939 + L1MC1 LINE L1 5834 6224 -109 768 120 98 15 chr15 22795857 22795990 -62899764 + L1MC1 LINE L1 6190 6333 0 1288 100 4 1 chr15 22796001 22796263 -62899491 + AluSx SINE Alu 2 300 0 249 275 0 14 chr15 22797272 22797341 -62898413 + GA-rich Low_complexity Low_complexity 3 70 0 2813 135 34 46 chr15 22797591 22798087 -62897667 - LTR42 LTR ERVL 0 495 6 631 221 13 57 chr15 22798292 22798450 -62897304 + MER5B DNA MER1_type 4 154 -24 4721 185 62 33 chr15 22799151 22799675 -62896079 - MER45B DNA AcHobo -551 1030 523 1553 93 19 0 chr15 22799675 22799889 -62895865 - AluSg/x SINE Alu -18 292 75 4721 185 62 33 chr15 22799889 22800365 -62895389 - MER45B DNA AcHobo -1058 523 1 21 36 0 0 chr15 22800425 22800453 -62895301 + AT_rich Low_complexity Low_complexity 1 28 0 190 369 27 40 chr15 22801527 22801676 -62894078 + MER5B DNA MER1_type 20 166 -12 645 296 20 20 chr15 22803159 22803358 -62892396 + MIR SINE MIR 14 212 -50 445 188 23 128 chr15 22803873 22803962 -62891792 - Charlie8 DNA MER1_type -122 208 136 2017 127 7 0 chr15 22803962 22804253 -62891501 - AluSx SINE Alu -19 293 1 445 188 23 128 chr15 22804253 22804296 -62891458 - Charlie8 DNA MER1_type -194 136 90 1059 243 78 10 chr15 22804905 22805214 -62890540 - MER46C DNA MER2_type -1 337 8 399 230 0 0 chr15 22805755 22805868 -62889886 + (TGGA)n Simple_repeat Simple_repeat 2 114 0 754 204 104 23 chr15 22808392 22808612 -62887142 - MLT1C LTR MaLR -224 243 6 234 91 0 0 chr15 22809405 22809438 -62886316 + (CA)n Simple_repeat Simple_repeat 2 34 0 1929 145 34 90 chr15 22809528 22809627 -62886127 + MLT1B LTR MaLR 1 104 -286 5190 80 11 3 chr15 22809627 22810275 -62885479 + L1PA11 LINE L1 5522 6174 0 1929 145 34 90 chr15 22810275 22810588 -62885166 + MLT1B LTR MaLR 104 390 0 275 183 9 0 chr15 22810611 22810671 -62885083 + MIR SINE MIR 93 146 -62 23 0 0 0 chr15 22810706 22810729 -62885025 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr15 22810736 22810760 -62884994 + AT_rich Low_complexity Low_complexity 1 24 0 857 173 19 12 chr15 22811358 22811520 -62884234 + MER20 DNA MER1_type 57 219 0 2232 179 31 20 chr15 22812706 22812877 -62882877 + MSTD LTR MaLR 1 169 -227 2523 75 0 0 chr15 22812877 22813183 -62882571 - AluY SINE Alu -4 307 2 2232 179 31 20 chr15 22813183 22813403 -62882351 + MSTD LTR MaLR 169 396 0 250 266 287 56 chr15 22813731 22814017 -62881737 - L2 LINE L2 -1 3271 2920 194 225 0 0 chr15 22814105 22814145 -62881609 + MIR SINE MIR 34 73 -135 290 294 147 0 chr15 22814399 22814508 -62881246 + L2 LINE L2 3189 3313 0 567 191 147 45 chr15 22815493 22815650 -62880104 + MIR SINE MIR 1 173 -89 723 251 208 55 chr15 22815652 22816123 -62879631 - MLT1H LTR MaLR -2 547 5 2402 166 85 15 chr15 22816758 22817453 -62878301 - L1MA9 LINE L1 -524 5788 5043 2708 139 43 47 chr15 22817457 22817907 -62877847 + L1MA9 LINE L1 5777 6226 -86 2299 80 3 3 chr15 22817907 22818194 -62877560 + AluSp SINE Alu 1 287 -26 2708 139 43 47 chr15 22818194 22818281 -62877473 + L1MA9 LINE L1 6226 6312 0 624 306 29 8 chr15 22818293 22818535 -62877219 - L1ME4a LINE L1 -259 5862 5616 2237 247 62 64 chr15 22818744 22819811 -62875943 - L1ME3A LINE L1 -37 6133 5076 654 168 106 55 chr15 22819816 22820131 -62875623 - MLT1A1 LTR MaLR 0 365 4 526 317 15 19 chr15 22820145 22820416 -62875338 - L1ME3A LINE L1 -1089 5057 4788 823 210 54 0 chr15 22820511 22820678 -62875076 - L1M4 LINE L1 -503 5671 5496 33557 69 8 11 chr15 22820691 22824898 -62870856 - L1PA6 LINE L1 -11 6143 1956 2456 74 0 0 chr15 22824898 22825195 -62870559 - AluY SINE Alu -14 297 1 33557 69 8 11 chr15 22825195 22826263 -62869491 - L1PA6 LINE L1 -4198 1956 887 567 211 61 0 chr15 22826330 22826444 -62869310 - MLT1A1 LTR MaLR -77 288 168 1988 162 47 11 chr15 22826468 22827012 -62868742 - L1M4 LINE L1 -699 5475 4908 214 309 127 64 chr15 22827393 22827535 -62868219 - MER5A DNA MER1_type -28 161 1 196 333 76 0 chr15 22829677 22829743 -62866011 + L2 LINE L2 3221 3291 -22 248 298 125 0 chr15 22831035 22831139 -62864615 - L2 LINE L2 -9 3304 3188 420 269 176 0 chr15 22831812 22831994 -62863760 - L1ME4a LINE L1 -38 6083 5870 650 13 13 0 chr15 22832118 22832197 -62863557 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 225 0 0 0 chr15 22832574 22832599 -62863155 + (CA)n Simple_repeat Simple_repeat 2 26 0 488 207 111 7 chr15 22832601 22832736 -62863018 - LTR16A LTR ERVL -1 449 301 735 325 57 19 chr15 22833042 22833554 -62862200 - HERV16 LTR ERVL -75 5344 4788 345 260 12 83 chr15 22833735 22833904 -62861850 - HERV16 LTR ERVL -606 4390 4234 368 350 18 0 chr15 22833944 22834107 -62861647 + ERVL LTR ERVL 3375 3540 -2224 279 315 36 0 chr15 22834095 22834206 -62861548 - HERV16 LTR ERVL -2300 3354 3240 * 692 315 20 8 chr15 22834288 22834539 -62861215 - HERV16 LTR ERVL -2385 3269 3016 827 211 117 0 chr15 22834566 22834746 -62861008 + MER3 DNA MER1_type 9 209 0 1077 317 95 6 chr15 22834751 22835288 -62860466 - HERV16 LTR ERVL -2482 3003 2419 946 216 22 11 chr15 22835319 22835500 -62860254 + MER58A DNA MER1_type 42 224 0 2487 87 3 18 chr15 22835523 22835855 -62859899 + L1PA3 LINE L1 5829 6155 0 1808 151 3 55 chr15 22835917 22836228 -62859526 + AluJo SINE Alu 1 295 -17 3719 276 77 43 chr15 22836288 22837954 -62857800 - HERV16 LTR ERVL -2847 2149 353 2340 88 13 0 chr15 22837954 22838259 -62857495 - AluY SINE Alu -2 309 1 3719 276 77 43 chr15 22838259 22838408 -62857346 - HERV16 LTR ERVL -4643 353 210 726 237 133 0 chr15 22838944 22839155 -62856599 - MIR SINE MIR -21 241 3 1996 170 0 0 chr15 22839314 22839626 -62856128 + AluSx SINE Alu 1 312 0 276 272 174 11 chr15 22840666 22840758 -62854996 + L2 LINE L2 3157 3263 -9 249 309 45 0 chr15 22840981 22841091 -62854663 - L1ME4a LINE L1 -201 5920 5806 669 223 5 82 chr15 22841121 22841341 -62854413 + LTR33 LTR ERVL 13 215 -306 374 240 10 10 chr15 22841591 22841695 -62854059 - L1ME4a LINE L1 -401 5720 5617 2826 103 78 5 chr15 22841947 22842344 -62853410 - MSTA LTR MaLR -2 426 1 772 205 53 0 chr15 22842603 22842793 -62852961 - L1ME LINE L1 -3714 2366 2167 565 119 158 0 chr15 22842789 22842890 -62852864 - L1MA9 LINE L1 -170 6142 6026 * 901 166 53 81 chr15 22842827 22843074 -62852680 + L1MA9 LINE L1 6073 6312 0 1513 279 42 63 chr15 22843577 22843964 -62851790 - L1ME LINE L1 -5402 668 299 2915 9 0 6 chr15 22843964 22844284 -62851470 - AluYb8 SINE Alu 0 318 1 1513 279 42 63 chr15 22844284 22844567 -62851187 - L1ME LINE L1 -5771 299 12 358 323 0 0 chr15 22844690 22844789 -62850965 - MIR3 SINE MIR -16 192 94 693 255 21 80 chr15 22846969 22847384 -62848370 + MLT1H LTR MaLR 50 409 0 409 260 16 8 chr15 22847665 22847788 -62847966 + LTR67 LTR ERVL 434 557 0 450 252 200 14 chr15 22847906 22848116 -62847638 + MIR SINE MIR 4 252 -10 250 67 44 0 chr15 22848134 22848179 -62847575 + (ATG)n Simple_repeat Simple_repeat 3 49 0 183 186 23 47 chr15 22848216 22848259 -62847495 - MIR SINE MIR -163 99 58 283 250 71 62 chr15 22849617 22849729 -62846025 + MIR SINE MIR 94 206 -56 881 169 44 16 chr15 22850775 22850958 -62844796 + MER5A DNA MER1_type 2 189 0 781 296 21 4 chr15 22850958 22851198 -62844556 + LTR16C LTR ERVL 248 491 0 273 326 67 4 chr15 22851243 22851371 -62844383 - MIR SINE MIR -43 165 28 488 325 39 7 chr15 22851412 22851566 -62844188 + MIR SINE MIR 11 169 -93 236 274 14 14 chr15 22851634 22851707 -62844047 - MIR SINE MIR -71 191 119 209 385 22 0 chr15 22851997 22852088 -62843666 - MIR3 SINE MIR -24 184 92 1111 231 172 42 chr15 22852680 22853215 -62842539 - LTR48B LTR ERV1 0 644 5 2060 97 52 3 chr15 22853573 22853862 -62841892 - AluSq SINE Alu -10 303 1 267 283 9 9 chr15 22854679 22854785 -62840969 + GA-rich Low_complexity Low_complexity 1 106 0 189 0 0 0 chr15 22855193 22855214 -62840540 + (T)n Simple_repeat Simple_repeat 1 21 0 2681 39 0 0 chr15 22855269 22855575 -62840179 + AluY SINE Alu 1 306 -5 482 284 38 43 chr15 22855796 22856007 -62839747 - LTR67 LTR ERVL -7 550 341 527 242 56 6 chr15 22856347 22856508 -62839246 - L2 LINE L2 -519 2795 2627 257 209 81 12 chr15 22856564 22856650 -62839104 + L1MC4 LINE L1 6612 6703 -1339 819 153 0 0 chr15 22856679 22856797 -62838957 - FLAM_C SINE Alu -15 118 1 51 65 0 0 chr15 22858083 22858176 -62837578 + AT_rich Low_complexity Low_complexity 1 93 0 21 57 0 0 chr15 22858309 22858344 -62837410 + AT_rich Low_complexity Low_complexity 1 35 0 881 268 112 49 chr15 22858657 22859162 -62836592 + L2 LINE L2 2548 3084 -229 1102 219 54 0 chr15 22859252 22859494 -62836260 - MIR SINE MIR 0 262 8 224 282 106 0 chr15 22859476 22859561 -62836193 + L2 LINE L2 3136 3229 -43 * 423 0 0 0 chr15 22860106 22860153 -62835601 + (TC)n Simple_repeat Simple_repeat 2 48 0 743 308 101 60 chr15 22860304 22861152 -62834602 - L2 LINE L2 -3 3269 2363 234 0 0 0 chr15 22861152 22861178 -62834576 + (TG)n Simple_repeat Simple_repeat 1 26 0 743 308 101 60 chr15 22861178 22861240 -62834514 - L2 LINE L2 -909 2363 2305 206 79 0 53 chr15 22861878 22861916 -62833838 + (TTCCC)n Simple_repeat Simple_repeat 5 40 0 25 65 0 0 chr15 22864134 22864180 -62831574 + AT_rich Low_complexity Low_complexity 1 46 0 207 150 50 0 chr15 22864681 22864741 -62831013 + CT-rich Low_complexity Low_complexity 2 64 0 323 195 260 16 chr15 22864799 22864922 -62830832 - LTR33 LTR ERVL -7 514 362 948 243 171 47 chr15 22864955 22865287 -62830467 + LTR33 LTR ERVL 67 459 -62 1587 168 56 3 chr15 22865287 22865421 -62830333 + AluJo SINE Alu 1 127 -185 1931 129 33 0 chr15 22865421 22865723 -62830031 + AluSx SINE Alu 1 312 0 1587 168 56 3 chr15 22865723 22865874 -62829880 + AluJo SINE Alu 127 301 -11 948 243 171 47 chr15 22865874 22865945 -62829809 + LTR33 LTR ERVL 459 520 -1 557 281 128 84 chr15 22865945 22866251 -62829503 - L1MEd LINE L1 -4903 1216 925 2196 132 0 0 chr15 22866251 22866555 -62829199 - AluSx SINE Alu -8 304 1 557 281 128 84 chr15 22866555 22867351 -62828403 - L1MEd LINE L1 -5194 925 66 470 329 12 0 chr15 22867502 22867666 -62828088 + MIR SINE MIR 4 169 -93 946 240 58 16 chr15 22867667 22867925 -62827829 - MLT1C LTR MaLR -8 459 191 444 213 75 0 chr15 22867935 22868029 -62827725 + LTR33-int LTR ERVL 333 433 -3123 1097 247 87 74 chr15 22868046 22868372 -62827382 - L1MC4a LINE L1 -1340 6468 6148 2350 103 0 6 chr15 22868372 22868684 -62827070 - AluSx SINE Alu -2 310 1 1097 247 87 74 chr15 22868684 22868873 -62826881 - L1MC4a LINE L1 -1660 6148 5943 429 20 0 0 chr15 22868873 22868923 -62826831 + (TA)n Simple_repeat Simple_repeat 2 51 0 1097 247 87 74 chr15 22868923 22868948 -62826806 - L1MC4a LINE L1 -1865 5943 5920 379 221 12 0 chr15 22869154 22869240 -62826514 - MER5A DNA MER1_type -87 102 16 2437 48 52 0 chr15 22871174 22871464 -62824290 - AluY SINE Alu -6 305 1 21 0 0 0 chr15 22871464 22871485 -62824269 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 22872565 22872586 -62823168 + AT_rich Low_complexity Low_complexity 1 21 0 459 289 46 55 chr15 22872924 22873142 -62822612 + LTR16C LTR ERVL 187 402 -89 220 342 84 61 chr15 22873357 22873620 -62822134 - L2 LINE L2 -8 3264 2996 665 328 81 36 chr15 22874717 22875189 -62820565 - LTR33 LTR ERVL -9 512 20 34 84 0 0 chr15 22875386 22875469 -62820285 + AT_rich Low_complexity Low_complexity 1 83 0 2234 156 6 6 chr15 22875609 22875974 -62819780 - MLT1A1 LTR MaLR 0 365 1 641 264 62 10 chr15 22876017 22876225 -62819529 - MIR SINE MIR -38 224 6 198 297 16 0 chr15 22876608 22876672 -62819082 - L2 LINE L2 -5 3308 3244 369 323 31 24 chr15 22876969 22877096 -62818658 + MIR3 SINE MIR 3 130 -78 401 265 10 0 chr15 22877291 22877393 -62818361 + MER5A DNA MER1_type 4 106 -83 354 67 0 0 chr15 22878194 22878239 -62817515 + MSTC LTR MaLR 2 46 -382 18699 156 43 12 chr15 22878239 22879905 -62815849 + L1M1 LINE L1 17 1630 -5935 243 0 0 0 chr15 22879905 22879932 -62815822 + (GA)n Simple_repeat Simple_repeat 2 28 0 18699 156 43 12 chr15 22879932 22880233 -62815521 + L1M1 LINE L1 1630 1920 -5645 2602 98 56 0 chr15 22880233 22880590 -62815164 - MER51B LTR ERV1 0 377 1 18699 156 43 12 chr15 22880590 22881808 -62813946 + L1M1 LINE L1 1920 3301 -4264 6461 95 8 12 chr15 22881824 22882200 -62813554 - L1PB1 LINE L1 0 6151 5775 2359 74 0 43 chr15 22882200 22882525 -62813229 - AluY SINE Alu 0 311 1 6461 95 8 12 chr15 22882525 22883157 -62812597 - L1PB1 LINE L1 -376 5775 5149 3042 113 2 2 chr15 22883164 22883573 -62812181 + LTR3 LTR ERVK 23 431 -1 12603 217 26 15 chr15 22883580 22886654 -62809100 - L1 LINE L1 -866 5280 2172 6269 66 0 4 chr15 22886635 22887423 -62808331 - L1PA6 LINE L1 0 6870 6086 * 10212 88 46 16 chr15 22887417 22887561 -62808193 - L1PA6 LINE L1 -3929 2934 2796 2356 106 0 6 chr15 22887561 22887872 -62807882 - AluSg SINE Alu 0 310 2 10212 88 46 16 chr15 22887872 22888997 -62806757 - L1PA6 LINE L1 -4067 2796 1607 2297 108 0 13 chr15 22888997 22889312 -62806442 - AluSx SINE Alu -1 311 1 10212 88 46 16 chr15 22889312 22889612 -62806142 - L1PA6 LINE L1 -5256 1607 1317 3434 134 6 17 chr15 22889627 22890157 -62805597 - L1PA6 LINE L1 -5706 1157 634 1148 162 5 0 chr15 22890157 22890355 -62805399 - L1PA6 LINE L1 -6663 200 2 4097 178 12 29 chr15 22890359 22890873 -62804881 + L1M1 LINE L1 3287 3808 -3757 2247 106 66 26 chr15 22890873 22891223 -62804531 - THE1B LTR MaLR 0 364 1 11580 97 25 0 chr15 22891223 22892765 -62802989 - THE1B-int LTR MaLR 0 1580 1 2159 108 61 55 chr15 22892765 22892805 -62802949 - THE1B LTR MaLR 0 364 326 2258 104 3 23 chr15 22892805 22893114 -62802640 + AluY SINE Alu 1 303 -8 2159 108 61 55 chr15 22893114 22893435 -62802319 - THE1B LTR MaLR -38 326 1 4097 178 12 29 chr15 22893435 22894117 -62801637 + L1M1 LINE L1 3805 4461 -3104 1191 199 121 49 chr15 22894120 22894427 -62801327 + MLT1A1 LTR MaLR 37 365 0 235 356 85 13 chr15 22894485 22894802 -62800952 - L2 LINE L2 -941 2373 2034 216 188 0 21 chr15 22895005 22895053 -62800701 - L2 LINE L2 -5 3308 3262 1682 176 0 7 chr15 22896356 22896645 -62799109 - AluSx SINE Alu -3 309 23 308 360 0 17 chr15 22896796 22896971 -62798783 + CT-rich Low_complexity Low_complexity 5 176 0 2477 55 0 7 chr15 22897229 22897519 -62798235 + AluY SINE Alu 1 288 -23 5916 116 103 16 chr15 22897560 22898573 -62797181 - MER52C LTR ERV1 -175 1103 3 642 277 135 30 chr15 22899297 22899734 -62796020 - MER90 LTR ERV1 -14 561 78 191 216 0 0 chr15 22899751 22899788 -62795966 + MIR3 SINE MIR 123 159 -49 3133 141 28 20 chr15 22899951 22900489 -62795265 - L1PA16 LINE L1 -1 6165 5624 2034 136 46 15 chr15 22900493 22900817 -62794937 - MSTB LTR MaLR -92 334 1 1077 152 94 0 chr15 22900818 22901009 -62794745 - L1PA16 LINE L1 -524 5642 5434 1536 233 12 0 chr15 22902192 22902522 -62793232 + MER58B DNA MER1_type 8 341 0 1898 110 61 0 chr15 22902576 22902840 -62792914 + AluSx SINE Alu 14 293 -19 560 301 88 89 chr15 22953944 22954482 -62741272 - L2 LINE L2 -371 2943 2406 234 0 0 0 chr15 22954482 22954508 -62741246 + (TG)n Simple_repeat Simple_repeat 1 26 0 560 301 88 89 chr15 22954508 22955210 -62740544 - L2 LINE L2 -908 2406 1705 206 79 0 53 chr15 22955210 22955248 -62740506 + (TCCCC)n Simple_repeat Simple_repeat 3 38 0 25 65 0 0 chr15 22957463 22957509 -62738245 + AT_rich Low_complexity Low_complexity 1 46 0 207 150 50 0 chr15 22958010 22958070 -62737684 + CT-rich Low_complexity Low_complexity 2 64 0 323 211 260 16 chr15 22958128 22958251 -62737503 - LTR33 LTR ERVL -7 514 362 935 243 171 47 chr15 22958284 22958616 -62737138 + LTR33 LTR ERVL 67 459 -62 1577 168 56 3 chr15 22958616 22958750 -62737004 + AluJo SINE Alu 1 127 -185 1921 129 33 0 chr15 22958750 22959052 -62736702 + AluSx SINE Alu 1 312 0 1577 168 56 3 chr15 22959052 22959203 -62736551 + AluJo SINE Alu 127 301 -11 935 243 171 47 chr15 22959203 22959274 -62736480 + LTR33 LTR ERVL 459 520 -1 657 284 129 86 chr15 22959274 22959580 -62736174 - L1MEd LINE L1 -4903 1216 924 2175 132 0 0 chr15 22959580 22959884 -62735870 - AluSx SINE Alu -8 304 1 657 284 129 86 chr15 22959884 22960681 -62735073 - L1MEd LINE L1 -5195 924 66 516 329 12 0 chr15 22960832 22960996 -62734758 + MIR SINE MIR 4 169 -93 947 240 58 16 chr15 22960997 22961255 -62734499 - MLT1C LTR MaLR -8 459 191 441 213 75 0 chr15 22961265 22961359 -62734395 + LTR33-int LTR ERVL 333 433 -3123 1136 247 87 74 chr15 22961376 22961702 -62734052 - L1MC4a LINE L1 -1340 6468 6148 2328 103 0 6 chr15 22961702 22962014 -62733740 - AluSx SINE Alu -2 310 1 1136 247 87 74 chr15 22962014 22962203 -62733551 - L1MC4a LINE L1 -1660 6148 5943 429 20 0 0 chr15 22962203 22962253 -62733501 + (TA)n Simple_repeat Simple_repeat 2 51 0 1136 247 87 74 chr15 22962253 22962278 -62733476 - L1MC4a LINE L1 -1865 5943 5920 433 199 237 0 chr15 22962439 22962570 -62733184 - MER5A DNA MER1_type -12 177 16 2414 48 52 0 chr15 22964504 22964794 -62730960 - AluY SINE Alu -6 305 1 21 0 0 0 chr15 22964794 22964815 -62730939 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 22965895 22965916 -62729838 + AT_rich Low_complexity Low_complexity 1 21 0 458 289 46 55 chr15 22966254 22966472 -62729282 + LTR16C LTR ERVL 187 402 -89 295 342 84 61 chr15 22966687 22966950 -62728804 - L2 LINE L2 -8 3264 2996 670 328 81 36 chr15 22968047 22968519 -62727235 - LTR33 LTR ERVL -9 512 20 34 84 0 0 chr15 22968716 22968799 -62726955 + AT_rich Low_complexity Low_complexity 1 83 0 2365 156 6 6 chr15 22968939 22969304 -62726450 - MLT1A1 LTR MaLR 0 365 1 708 264 62 10 chr15 22969347 22969555 -62726199 - MIR SINE MIR -38 224 6 214 297 16 0 chr15 22969938 22970002 -62725752 - L2 LINE L2 -5 3308 3244 412 323 31 24 chr15 22970299 22970426 -62725328 + MIR3 SINE MIR 3 130 -78 436 265 10 0 chr15 22970621 22970723 -62725031 + MER5A DNA MER1_type 4 106 -83 199 263 83 75 chr15 22970931 22971064 -62724690 - L2 LINE L2 -182 3090 2957 354 67 0 0 chr15 22971524 22971569 -62724185 + MSTC LTR MaLR 2 46 -382 18691 157 42 11 chr15 22971569 22973235 -62722519 + L1M1 LINE L1 17 1630 -5935 243 0 0 0 chr15 22973235 22973262 -62722492 + (GA)n Simple_repeat Simple_repeat 2 28 0 18691 157 42 11 chr15 22973262 22973563 -62722191 + L1M1 LINE L1 1630 1920 -5645 2729 98 56 0 chr15 22973563 22973920 -62721834 - MER51B LTR ERV1 0 377 1 18691 157 42 11 chr15 22973920 22975138 -62720616 + L1M1 LINE L1 1920 3301 -4264 6495 95 8 12 chr15 22975154 22975530 -62720224 - L1PB1 LINE L1 0 6151 5775 2336 74 0 43 chr15 22975530 22975855 -62719899 - AluY SINE Alu 0 311 1 6495 95 8 12 chr15 22975855 22976487 -62719267 - L1PB1 LINE L1 -376 5775 5149 3025 113 2 2 chr15 22976494 22976903 -62718851 + LTR3 LTR ERVK 23 431 -1 12809 217 26 15 chr15 22976910 22979983 -62715771 - L1 LINE L1 -866 5280 2172 6281 66 0 4 chr15 22979964 22980752 -62715002 - L1PA6 LINE L1 0 6870 6086 * 10260 88 46 16 chr15 22980746 22980890 -62714864 - L1PA6 LINE L1 -3929 2934 2796 2344 106 0 6 chr15 22980890 22981201 -62714553 - AluSg SINE Alu 0 310 2 10260 88 46 16 chr15 22981201 22982326 -62713428 - L1PA6 LINE L1 -4067 2796 1607 2277 108 0 13 chr15 22982326 22982641 -62713113 - AluSx SINE Alu -1 311 1 10260 88 46 16 chr15 22982641 22982941 -62712813 - L1PA6 LINE L1 -5256 1607 1317 3397 134 6 17 chr15 22982956 22983486 -62712268 - L1PA6 LINE L1 -5706 1157 634 1145 162 5 0 chr15 22983486 22983684 -62712070 - L1PA6 LINE L1 -6663 200 2 4148 178 12 29 chr15 22983688 22984202 -62711552 + L1M1 LINE L1 3287 3808 -3757 2388 106 66 26 chr15 22984202 22984552 -62711202 - THE1B LTR MaLR 0 364 1 12203 97 25 0 chr15 22984552 22986094 -62709660 - THE1B-int LTR MaLR 0 1580 1 2289 108 61 55 chr15 22986094 22986134 -62709620 - THE1B LTR MaLR 0 364 326 2237 104 3 23 chr15 22986134 22986443 -62709311 + AluY SINE Alu 1 303 -8 2289 108 61 55 chr15 22986443 22986764 -62708990 - THE1B LTR MaLR -38 326 1 4148 178 12 29 chr15 22986764 22987446 -62708308 + L1M1 LINE L1 3805 4461 -3104 1198 199 121 49 chr15 22987449 22987756 -62707998 + MLT1A1 LTR MaLR 37 365 0 315 356 85 13 chr15 22987814 22988131 -62707623 - L2 LINE L2 -941 2373 2034 229 188 0 21 chr15 22988334 22988382 -62707372 - L2 LINE L2 -5 3308 3262 190 214 60 120 chr15 22988431 22988548 -62707206 + L2 LINE L2 3158 3267 -5 2001 132 0 3 chr15 22989685 22989973 -62705781 - AluSx SINE Alu -3 309 23 2402 55 3 7 chr15 22990568 22990857 -62704897 + AluY SINE Alu 1 288 -23 5771 118 102 16 chr15 22990898 22991912 -62703842 - MER52C LTR ERV1 -175 1103 3 635 279 135 30 chr15 22992636 22993073 -62702681 - MER90 LTR ERV1 -14 561 78 203 216 0 0 chr15 22993090 22993127 -62702627 + MIR3 SINE MIR 123 159 -49 3110 158 28 20 chr15 22993290 22993828 -62701926 - L1PA16 LINE L1 -1 6165 5624 2017 136 46 15 chr15 22993832 22994156 -62701598 - MSTB LTR MaLR -92 334 1 1086 152 94 0 chr15 22994157 22994348 -62701406 - L1PA16 LINE L1 -524 5642 5434 211 301 17 75 chr15 22994437 22994569 -62701185 - MIR SINE MIR -88 120 1 1562 233 12 0 chr15 22995531 22995861 -62699893 + MER58B DNA MER1_type 8 341 0 1882 110 61 0 chr15 22995915 22996179 -62699575 + AluSx SINE Alu 14 293 -19 25 0 0 0 chr15 22997505 22997530 -62698224 + AT_rich Low_complexity Low_complexity 1 25 0 3385 125 48 103 chr15 22997729 22998076 -62697678 + MER6A DNA MER2_type 1 365 -500 309 26 0 0 chr15 22998076 22998114 -62697640 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 2379 60 0 3 chr15 22998114 22998396 -62697358 - AluSc SINE Alu -28 281 1 3385 125 48 103 chr15 22998396 22998479 -62697275 + MER6A DNA MER2_type 364 450 -415 2175 95 14 0 chr15 22998479 22998764 -62696990 - AluY SINE Alu -3 308 20 3385 125 48 103 chr15 22998764 22998971 -62696783 + MER6A DNA MER2_type 450 605 0 1002 219 90 0 chr15 22999060 22999261 -62696493 - MER20 DNA MER1_type 0 219 1 646 251 30 25 chr15 23000298 23000497 -62695257 + L1ME4a LINE L1 5572 5771 -350 310 218 89 24 chr15 23000614 23000738 -62695016 + L1ME4a LINE L1 5956 6087 -34 24 54 0 18 chr15 23000749 23000784 -62694970 + AT_rich Low_complexity Low_complexity 1 36 -19 1785 156 14 20 chr15 23000784 23001079 -62694675 - AluSx SINE Alu -19 293 1 24 54 0 18 chr15 23001079 23001099 -62694655 + AT_rich Low_complexity Low_complexity 36 55 0 1186 205 134 72 chr15 23001232 23001883 -62693871 + LTR1B LTR ERV1 105 785 0 1108 212 136 4 chr15 23001885 23002135 -62693619 - MER21B LTR ERV1 -562 301 19 307 210 17 118 chr15 23002132 23002251 -62693503 - MER21B LTR ERV1 -756 107 1 * 309 276 168 24 chr15 23002956 23003206 -62692548 - L1MC4a LINE L1 -1690 6118 5833 778 106 35 18 chr15 23003499 23003669 -62692085 + GA-rich Low_complexity Low_complexity 2 174 0 2360 72 0 0 chr15 23003865 23004155 -62691599 - AluY SINE Alu -3 308 19 203 86 86 0 chr15 23005699 23005734 -62690020 + T-rich Low_complexity Low_complexity 1 38 0 198 0 0 0 chr15 23005776 23005798 -62689956 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2341 31 0 0 chr15 23005799 23006058 -62689696 - L1PA4 LINE L1 -8 6147 5889 407 153 0 0 chr15 23006467 23006526 -62689228 - MER74A LTR ERVL -26 532 474 2181 123 3 3 chr15 23006526 23006835 -62688919 + AluSq SINE Alu 1 309 -4 346 158 0 40 chr15 23006838 23006914 -62688840 + LTR30 LTR ERV1 552 624 -98 1383 133 57 0 chr15 23006914 23007125 -62688629 + LTR12 LTR ERV1 362 584 -130 22 0 0 0 chr15 23007400 23007422 -62688332 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr15 23007426 23007462 -62688292 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1585 189 34 6 chr15 23007464 23007792 -62687962 - MER74A LTR ERVL -70 488 152 313 280 80 0 chr15 23007899 23008049 -62687705 - MER74A LTR ERVL -265 293 132 195 326 0 0 chr15 23008231 23008274 -62687480 + MIR SINE MIR 13 55 -207 2130 117 3 7 chr15 23008289 23008587 -62687167 + AluSx SINE Alu 1 297 -15 439 239 0 0 chr15 23008650 23008742 -62687012 - MIR SINE MIR -67 195 104 376 259 12 0 chr15 23008722 23008807 -62686947 + MIR SINE MIR 177 262 0 * 255 310 40 30 chr15 23010441 23010541 -62685213 + MIR SINE MIR 34 134 -74 2732 137 14 18 chr15 23010581 23011019 -62684735 + LOR1b LTR ERV1 1 436 -25 684 119 0 0 chr15 23011097 23011198 -62684556 - LTR12 LTR ERV1 -133 581 481 334 271 17 0 chr15 23011199 23011317 -62684437 - LTR30 LTR ERV1 -79 643 524 1145 145 144 15 chr15 23011317 23011567 -62684187 - LTR12 LTR ERV1 -432 2006 55 308 173 0 0 chr15 23011567 23011619 -62684135 - LTR30 LTR ERV1 -670 52 1 2096 104 7 11 chr15 23014571 23014905 -62680849 - AluSq SINE Alu 0 333 1 704 255 96 10 chr15 23015419 23015627 -62680127 + MIR SINE MIR 34 259 -3 446 82 0 0 chr15 23016316 23016377 -62679377 + MSTB2 LTR MaLR 85 145 -312 935 270 91 19 chr15 23016773 23017092 -62678662 - LTR16B LTR ERVL 0 464 123 369 0 0 0 chr15 23017159 23017200 -62678554 + (CA)n Simple_repeat Simple_repeat 2 42 0 671 315 42 52 chr15 23017246 23017331 -62678423 - L1MC4a LINE L1 -1892 5916 5832 2545 154 43 19 chr15 23017331 23017747 -62678007 + MSTB LTR MaLR 1 426 0 671 315 42 52 chr15 23017747 23018137 -62677617 - L1MC4a LINE L1 -1976 5832 5446 263 301 14 14 chr15 23018511 23018584 -62677170 - MIR SINE MIR -113 95 23 21 36 0 0 chr15 23018599 23018627 -62677127 + AT_rich Low_complexity Low_complexity 1 28 0 1698 161 17 30 chr15 23019165 23019464 -62676290 + MSTB LTR MaLR 75 369 -57 278 310 32 32 chr15 23019795 23019953 -62675801 - L1ME3A LINE L1 0 6170 6013 1155 265 53 39 chr15 23020055 23020523 -62675231 - L1MC5 LINE L1 -439 7522 7048 235 140 0 20 chr15 23020531 23020581 -62675173 + L1MEc LINE L1 1891 1939 -4457 2511 58 0 0 chr15 23020583 23020874 -62674880 + AluY SINE Alu 1 291 -20 1135 268 63 31 chr15 23020907 23021351 -62674403 - L1MCc LINE L1 -5037 1386 929 1556 135 32 35 chr15 23021620 23021902 -62673852 + AluY SINE Alu 11 291 -20 1141 268 63 31 chr15 23021935 23022379 -62673375 - L1MCc LINE L1 -5037 1386 929 186 43 0 0 chr15 23022414 23022437 -62673317 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 288 262 56 65 chr15 23022890 23022912 -62672842 + MIR SINE MIR 49 70 -192 2439 74 0 3 chr15 23022912 23023211 -62672543 + AluY SINE Alu 1 298 -13 288 262 56 65 chr15 23023211 23023295 -62672459 + MIR SINE MIR 70 154 -108 * 661 152 8 40 chr15 23023294 23023419 -62672335 - L2 LINE L2 0 3313 3193 234 258 32 21 chr15 23023422 23023515 -62672239 + MIR SINE MIR 163 256 -6 226 365 21 10 chr15 23024680 23024776 -62670978 - MIR SINE MIR -164 98 2 2737 65 9 0 chr15 23024894 23025234 -62670520 - L1PA8 LINE L1 -7 6165 5823 2514 197 123 2 chr15 23025298 23025800 -62669954 + MLT1F1 LTR MaLR 1 563 -4 279 258 57 32 chr15 23025830 23025954 -62669800 + MLT1F1-int LTR MaLR 1243 1369 -2 449 162 14 0 chr15 23025957 23026031 -62669723 + MLT1F1 LTR MaLR 3 77 -490 316 222 37 89 chr15 23026069 23026204 -62669550 + MER45A DNA AcHobo 51 178 0 295 324 37 0 chr15 23027477 23027585 -62668169 + LTR16A LTR ERVL 3 114 -336 252 333 94 18 chr15 23027630 23027801 -62667953 + LTR16A LTR ERVL 258 441 -9 485 336 87 25 chr15 23028170 23028536 -62667218 + HERV16 LTR ERVL 272 660 -4336 2186 112 27 0 chr15 23028544 23028840 -62666914 + AluSc SINE Alu 1 304 -5 1547 298 16 7 chr15 23029131 23029571 -62666183 + HERV16 LTR ERVL 947 1390 -3606 709 273 6 6 chr15 23029567 23029743 -62666011 + ERVL LTR ERVL 3021 3196 -2568 * 438 297 61 20 chr15 23029796 23030098 -62665656 + ERVL LTR ERVL 3134 3325 -1671 * 581 297 78 63 chr15 23030078 23030843 -62664911 + ERVL LTR ERVL 4237 5383 -381 933 70 0 0 chr15 23031814 23031928 -62663826 + AluSp/q SINE Alu 186 299 -14 226 176 0 103 chr15 23032868 23032936 -62662818 + L1PB1 LINE L1 105 165 -6698 14661 159 52 21 chr15 23032968 23034406 -62661348 + L1PB1 LINE L1 630 2022 -4845 2494 132 24 16 chr15 23034406 23034778 -62660976 - THE1C LTR MaLR 0 375 1 10029 105 57 73 chr15 23034778 23036383 -62659371 - THE1C-int LTR MaLR 0 1580 1 2499 109 41 16 chr15 23036383 23036749 -62659005 - THE1C LTR MaLR 0 375 1 14661 159 52 21 chr15 23036749 23041273 -62654481 + L1PB1 LINE L1 2021 6867 0 192 281 53 0 chr15 23041276 23041333 -62654421 - MIR SINE MIR -155 107 48 585 332 21 17 chr15 23043581 23043816 -62651938 - HERVL LTR ERVL -2321 3333 3098 1498 317 59 25 chr15 23043919 23044598 -62651156 - HERVL LTR ERVL -2102 2894 2193 275 374 9 0 chr15 23044813 23044920 -62650834 + MIR SINE MIR 37 144 -64 2373 73 0 3 chr15 23044942 23045229 -62650525 + AluY SINE Alu 1 286 -25 223 250 10 39 chr15 23045580 23045684 -62650070 + T-rich Low_complexity Low_complexity 2 102 0 802 82 59 15 chr15 23046081 23046216 -62649538 - AluSq/x SINE Alu -171 141 1 335 289 107 31 chr15 23046996 23047155 -62648599 + MIR SINE MIR 22 192 -70 846 201 34 61 chr15 23048018 23048312 -62647442 + pTR5 LTR ERV1 743 1028 -1410 5607 97 25 58 chr15 23048391 23049246 -62646508 + LTR12 LTR ERV1 1 826 0 189 196 0 0 chr15 23049485 23049536 -62646218 + GA-rich Low_complexity Low_complexity 1 51 0 216 0 0 0 chr15 23049566 23049590 -62646164 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2261 101 7 3 chr15 23049603 23049909 -62645845 - AluY SINE Alu -4 307 1 2154 136 3 0 chr15 23049916 23050224 -62645530 - AluSx SINE Alu -3 309 1 448 285 65 54 chr15 23050241 23050427 -62645327 + MIR3 SINE MIR 16 203 -5 1759 138 21 10 chr15 23050722 23051011 -62644743 + AluSx SINE Alu 1 292 -20 28 48 0 0 chr15 23051320 23051362 -62644392 + AT_rich Low_complexity Low_complexity 1 42 0 1156 159 0 15 chr15 23051591 23051792 -62643962 + AluSg/x SINE Alu 96 293 -19 238 238 143 0 chr15 23051985 23052048 -62643706 + MIR SINE MIR 15 86 -176 468 273 0 0 chr15 23052433 23052554 -62643200 - MIR SINE MIR -13 249 129 180 0 0 0 chr15 23052904 23052924 -62642830 + (T)n Simple_repeat Simple_repeat 1 20 0 1699 152 72 0 chr15 23054143 23054419 -62641335 - AluSx SINE Alu -16 296 1 851 249 30 0 chr15 23054670 23054867 -62640887 - MIR SINE MIR -48 214 12 268 309 187 22 chr15 23054847 23055125 -62640629 + L2 LINE L2 2583 2906 -408 * 334 267 134 35 chr15 23055361 23055563 -62640191 + L3 LINE CR1 1133 1354 -223 551 264 151 9 chr15 23058033 23058245 -62637509 - MLT1L LTR MaLR 0 615 374 23 54 0 0 chr15 23058859 23058896 -62636858 + AT_rich Low_complexity Low_complexity 1 37 0 902 276 199 28 chr15 23059086 23059549 -62636205 + MLT1H LTR MaLR 8 549 0 585 235 0 0 chr15 23060722 23060841 -62634913 - MER94 DNA DNA -15 119 1 4465 151 51 8 chr15 23061937 23062640 -62633114 + MER44D DNA MER2_type 1 605 0 330 292 141 31 chr15 23062812 23063004 -62632750 - MIR SINE MIR -19 243 31 500 313 0 8 chr15 23063965 23064093 -62631661 - MER5B DNA MER1_type -1 177 51 300 253 105 43 chr15 23064704 23064866 -62630888 + MLT1L LTR MaLR 442 613 -2 313 255 181 20 chr15 23065539 23065688 -62630066 + MIR3 SINE MIR 5 177 -31 294 237 0 0 chr15 23066502 23066578 -62629176 + CT-rich Low_complexity Low_complexity 2 77 0 2220 157 15 48 chr15 23067444 23067695 -62628059 - MER65A LTR ERV1 0 445 214 2374 67 10 3 chr15 23067695 23067993 -62627761 - AluY SINE Alu -11 300 1 2220 157 15 48 chr15 23067993 23068201 -62627553 - MER65A LTR ERV1 -231 214 1 2148 221 54 19 chr15 23068201 23068815 -62626939 - MER65A-int LTR ERV1 0 4871 4237 660 240 111 0 chr15 23068815 23068986 -62626768 - MER65A-int LTR ERV1 -739 4132 3943 347 164 14 41 chr15 23069396 23069469 -62626285 - MER65A-int LTR ERV1 -980 3956 3886 * 2110 213 97 89 chr15 23069457 23070886 -62624868 - MER65A-int LTR ERV1 -1114 4028 2640 606 216 10 50 chr15 23070971 23071170 -62624584 - MER65A-int LTR ERV1 -2868 3730 3540 7576 190 57 67 chr15 23071311 23074264 -62621490 - MER65A-int LTR ERV1 -2377 2494 54 2625 137 11 14 chr15 23074318 23074762 -62620992 - MER65A LTR ERV1 -2 443 1 213 327 100 9 chr15 23074938 23075068 -62620686 + MIR3 SINE MIR 20 160 -48 2103 127 0 0 chr15 23075311 23075595 -62620159 + AluSx SINE Alu 1 284 -28 387 0 0 0 chr15 23075598 23075641 -62620113 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 363 351 114 41 chr15 23076068 23076649 -62619105 - L2 LINE L2 -19 3253 2626 517 289 108 60 chr15 23077069 23077715 -62618039 - L1M4 LINE L1 -2718 3428 2752 241 322 52 0 chr15 23078487 23078602 -62617152 - HAL1b LINE L1 -453 895 775 374 231 133 34 chr15 23078627 23078891 -62616863 - HAL1b LINE L1 -635 713 424 709 207 0 13 chr15 23078947 23079097 -62616657 - MER106A DNA MER1_type -88 148 1 386 297 86 40 chr15 23079166 23079388 -62616366 - HAL1b LINE L1 -1052 296 65 803 329 148 8 chr15 23081076 23081462 -62614292 + LTR16A LTR ERVL 11 450 0 323 256 110 43 chr15 23081817 23081981 -62613773 - MIR SINE MIR -43 219 45 23 0 0 0 chr15 23082276 23082299 -62613455 + AT_rich Low_complexity Low_complexity 1 23 0 1837 156 0 35 chr15 23083695 23084010 -62611744 - AluSx SINE Alu -8 304 1 314 285 89 25 chr15 23084624 23084782 -62610972 + LTR16A LTR ERVL 283 450 0 2167 102 3 10 chr15 23085268 23085562 -62610192 - AluSx SINE Alu 0 312 21 328 339 8 0 chr15 23085664 23085791 -62609963 - MIR SINE MIR -2 260 133 366 316 105 77 chr15 23085893 23086285 -62609469 + L2 LINE L2 2862 3264 -8 2469 83 0 3 chr15 23086374 23086687 -62609067 - AluSx SINE Alu 0 312 1 244 284 233 9 chr15 23086966 23087082 -62608672 + MIR SINE MIR 10 151 -111 1368 117 35 31 chr15 23088698 23088955 -62606799 + L1MA9 LINE L1 5894 6151 -161 2292 147 52 5 chr15 23088955 23089356 -62606398 + MER83 LTR ERV1 1 420 -28 604 134 71 0 chr15 23089374 23089501 -62606253 + L1MA9 LINE L1 6147 6282 -30 242 213 260 16 chr15 23089803 23089930 -62605824 + LTR33 LTR ERVL 8 165 -356 586 214 0 21 chr15 23090217 23090362 -62605392 - L1ME1 LINE L1 0 6184 6040 388 338 73 0 chr15 23090363 23090499 -62605255 - L2 LINE L2 -564 2750 2605 266 361 102 19 chr15 23090496 23090604 -62605150 - L2 LINE L2 -45 3227 3111 * 235 262 101 38 chr15 23091092 23091249 -62604505 + MIR SINE MIR 1 169 -64 1343 219 20 12 chr15 23091783 23092125 -62603629 - L1ME LINE L1 -559 5676 5332 487 242 16 0 chr15 23092125 23092249 -62603505 - MER58B DNA MER1_type 0 341 216 633 205 58 11 chr15 23092318 23092508 -62603246 - L1ME LINE L1 -880 5335 5137 2959 210 56 96 chr15 23092677 23093396 -62602358 - L1ME LINE L1 -1877 4338 3701 1391 85 5 31 chr15 23093396 23093616 -62602138 + L1MA2 LINE L1 6087 6304 0 2959 210 56 96 chr15 23093616 23094296 -62601458 - L1ME LINE L1 -2514 3701 2995 2088 124 40 0 chr15 23094314 23094637 -62601117 - L1PA15 LINE L1 -21 6144 5809 1298 258 43 5 chr15 23094643 23095089 -62600665 - L1ME LINE L1 -3231 2984 2522 2039 166 42 13 chr15 23095112 23095491 -62600263 + MLT1B LTR MaLR 1 390 0 1495 72 5 0 chr15 23095513 23095707 -62600047 - AluY SINE Alu -1 310 116 326 133 34 10 chr15 23095707 23095791 -62599963 - AluS SINE Alu -237 62 1 957 301 75 10 chr15 23096133 23096612 -62599142 - L1ME LINE L1 -5835 561 52 2501 66 0 3 chr15 23096717 23097019 -62598735 - AluY SINE Alu -10 301 1 2365 85 7 0 chr15 23097032 23097338 -62598416 - AluY SINE Alu -3 308 1 345 174 0 0 chr15 23097770 23097839 -62597915 + GA-rich Low_complexity Low_complexity 1 69 0 812 268 77 1 chr15 23098290 23098634 -62597120 + LTR16C LTR ERVL 80 491 0 1624 105 8 32 chr15 23099099 23099346 -62596408 - AluSg/x SINE Alu 0 310 70 804 220 86 19 chr15 23099786 23099995 -62595759 + MER58A DNA MER1_type 1 223 -1 647 159 0 0 chr15 23100182 23100289 -62595465 - AluSx SINE Alu -1 309 203 822 153 0 0 chr15 23100293 23100411 -62595343 - AluSx SINE Alu -195 118 1 698 189 132 26 chr15 23100438 23100666 -62595088 + LTR16A1 LTR ERVL 204 455 -2 3595 156 16 0 chr15 23101208 23101854 -62593900 + L1PA14 LINE L1 5479 6134 -27 6823 126 47 27 chr15 23102185 23103387 -62592367 - Tigger3b DNA MER2_type -2 1229 3 255 333 42 7 chr15 23104076 23104220 -62591534 - MER117 DNA MER1_type -48 149 1 296 250 69 62 chr15 23105365 23105509 -62590245 - L2 LINE L2 -5 3308 3164 197 356 23 0 chr15 23105879 23105966 -62589788 - L2 LINE L2 -647 2667 2579 2572 33 7 3 chr15 23106125 23106431 -62589323 + AluY SINE Alu 1 307 -4 2596 144 56 4 chr15 23106724 23107224 -62588530 + L1MA5 LINE L1 5770 6295 -5 1066 154 71 139 chr15 23107316 23107417 -62588337 + L1MDa LINE L1 16 122 -6418 1935 150 48 27 chr15 23107417 23107831 -62587923 - L1MA7 LINE L1 0 6291 5869 1066 154 71 139 chr15 23107831 23108124 -62587630 + L1MDa LINE L1 122 383 -6157 1022 167 11 6 chr15 23108124 23108298 -62587456 + MER5A DNA MER1_type 15 189 0 277 179 13 39 chr15 23108446 23108524 -62587230 - L1PA16 LINE L1 0 6166 6091 1001 187 16 5 chr15 23109617 23109804 -62585950 + MER5A DNA MER1_type 1 189 0 2136 127 132 8 chr15 23110278 23110657 -62585097 + MSTA LTR MaLR 1 426 -2 4254 136 14 14 chr15 23111984 23112697 -62583057 - L1PA10 LINE L1 -13 6155 5443 383 183 71 8 chr15 23113299 23113425 -62582329 - L1P4 LINE L1 -593 5575 5442 194 341 0 33 chr15 23113539 23113630 -62582124 + MER5A DNA MER1_type 3 90 -99 * 282 244 0 89 chr15 23113571 23113661 -62582093 - MER5A DNA MER1_type -22 167 86 341 289 67 37 chr15 23113790 23113925 -62581829 + MER5B DNA MER1_type 39 177 -1 312 288 136 30 chr15 23114140 23114404 -62581350 + MER102b DNA MER1_type 7 298 -43 184 250 68 0 chr15 23114453 23114497 -62581257 - L2 LINE L2 -4 3268 3222 219 69 0 0 chr15 23114831 23114860 -62580894 + (A)n Simple_repeat Simple_repeat 1 29 0 5870 55 4 0 chr15 23115866 23116596 -62579158 - L1PA7 LINE L1 -2 6152 5420 367 258 86 0 chr15 23117183 23117311 -62578443 + MIR SINE MIR 111 249 -13 923 203 154 48 chr15 23117585 23117915 -62577839 + MLT1A1 LTR MaLR 1 365 0 1639 294 112 20 chr15 23118025 23118661 -62577093 + L2 LINE L2 38 731 -2583 998 272 140 14 chr15 23118663 23119171 -62576583 + L2 LINE L2 2692 3280 -33 219 289 14 49 chr15 23119426 23119568 -62576186 + T-rich Low_complexity Low_complexity 4 140 0 5577 85 29 1 chr15 23120546 23121371 -62574383 + L1PA10 LINE L1 5321 6168 0 30 59 0 0 chr15 23123192 23123243 -62572511 + AT_rich Low_complexity Low_complexity 1 51 0 276 341 59 73 chr15 23123265 23123538 -62572216 + L2 LINE L2 3004 3272 0 330 290 87 48 chr15 23124342 23124476 -62571278 + L1MEd LINE L1 598 725 -5445 613 281 110 74 chr15 23124476 23124634 -62571120 - LTR16C LTR ERVL 0 491 340 2170 112 11 0 chr15 23124634 23124945 -62570809 + AluSp SINE Alu 1 314 0 613 281 110 74 chr15 23124945 23125257 -62570497 - LTR16C LTR ERVL -151 340 1 330 290 87 48 chr15 23125257 23125517 -62570237 + L1MEd LINE L1 725 1035 -5135 284 271 32 48 chr15 23125565 23125753 -62570001 + L1MEd LINE L1 1004 1188 -4931 311 332 133 4 chr15 23125801 23126057 -62569697 + L1MEd LINE L1 1274 1562 -4748 297 194 15 0 chr15 23126063 23126130 -62569624 + L1MEd LINE L1 1541 1608 -4702 2269 119 3 0 chr15 23126331 23126624 -62569130 + AluSx SINE Alu 1 294 -18 527 270 147 53 chr15 23127025 23127421 -62568333 + L1MEd LINE L1 3260 3692 -2437 247 294 15 0 chr15 23127830 23127898 -62567856 + LTR16C LTR ERVL 288 356 -135 400 192 50 25 chr15 23128017 23128137 -62567617 + L1MEd LINE L1 3830 3952 -2177 3815 149 87 52 chr15 23128148 23128319 -62567435 + L1MB3 LINE L1 5192 5356 -827 2280 95 10 3 chr15 23128319 23128624 -62567130 + AluSp SINE Alu 1 307 -6 3815 149 87 52 chr15 23128624 23129410 -62566344 + L1MB3 LINE L1 5356 6182 -1 689 274 109 43 chr15 23129521 23130029 -62565725 - LTR33A LTR ERVL -8 515 1 281 236 14 0 chr15 23130079 23130151 -62565603 + L1ME3A LINE L1 6010 6082 -88 1835 158 10 3 chr15 23130921 23131219 -62564535 + AluSx SINE Alu 1 300 -12 1364 278 41 25 chr15 23131298 23131462 -62564292 + LTR16A LTR ERVL 2 162 -288 1347 171 90 81 chr15 23131462 23131872 -62563882 + MLT2D LTR ERVL 1 414 0 1364 278 41 25 chr15 23131872 23132149 -62563605 + LTR16A LTR ERVL 162 450 0 887 99 0 8 chr15 23132392 23132513 -62563241 - AluSp SINE Alu -119 194 75 223 190 13 13 chr15 23132684 23132763 -62562991 + (TA)n Simple_repeat Simple_repeat 1 79 0 331 200 104 0 chr15 23133136 23133261 -62562493 + CT-rich Low_complexity Low_complexity 4 141 0 328 308 158 0 chr15 23133261 23133495 -62562259 - HAL1 LINE L1 -1205 1302 1032 1773 178 6 16 chr15 23133529 23133843 -62561911 - AluSx SINE Alu -1 311 1 2191 98 7 3 chr15 23134302 23134599 -62561155 + AluY SINE Alu 1 298 -13 372 254 41 41 chr15 23134864 23134986 -62560768 + L1ME3 LINE L1 5999 6120 -42 2403 90 3 10 chr15 23135442 23135753 -62560001 - AluY SINE Alu -2 309 1 662 297 47 8 chr15 23136158 23136394 -62559360 - LTR16A LTR ERVL -7 443 199 309 313 0 0 chr15 23136856 23137003 -62558751 + ERVL LTR ERVL 3875 4021 -1743 1115 377 50 17 chr15 23137098 23138018 -62557736 + ERVL LTR ERVL 4161 5110 -654 1400 303 52 24 chr15 23138156 23138784 -62556970 - HERV16 LTR ERVL -4350 646 1 905 333 38 16 chr15 23138784 23139210 -62556544 - LTR16A LTR ERVL 0 450 16 697 261 58 62 chr15 23139920 23140245 -62555509 + MLT1I LTR MaLR 85 408 -1 243 265 53 53 chr15 23141039 23141171 -62554583 + MIR SINE MIR 126 257 -5 1237 208 97 93 chr15 23141394 23141576 -62554178 + MLT1E LTR MaLR 1 181 -412 1853 195 3 14 chr15 23141576 23141945 -62553809 - MLT1A1 LTR MaLR 0 365 1 1237 208 97 93 chr15 23141945 23142361 -62553393 + MLT1E LTR MaLR 181 589 -4 192 309 55 0 chr15 23142797 23142852 -62552902 - MIR SINE MIR -173 89 32 25 31 0 0 chr15 23144292 23144324 -62551430 + AT_rich Low_complexity Low_complexity 1 32 0 243 291 60 34 chr15 23145229 23145346 -62550408 + L2 LINE L2 3193 3312 -1 414 236 22 0 chr15 23145967 23146056 -62549698 - MIR SINE MIR -8 254 164 670 193 139 0 chr15 23146133 23146299 -62549455 - MER3 DNA MER1_type -1 208 20 312 284 38 11 chr15 23146354 23146480 -62549274 - MIR SINE MIR -30 178 45 370 345 70 6 chr15 23147314 23147485 -62548269 + LTR16C LTR ERVL 96 277 -214 1155 251 171 7 chr15 23147507 23147921 -62547833 + MLT1E LTR MaLR 48 529 -64 2129 205 51 3 chr15 23147927 23148498 -62547256 - L1M4 LINE L1 -1537 4609 4012 413 197 68 0 chr15 23148516 23148633 -62547121 + MLT1C LTR MaLR 1 125 -342 6092 102 18 1 chr15 23148633 23148793 -62546961 + L1PA10 LINE L1 4615 4771 -1397 2456 105 41 6 chr15 23148793 23149155 -62546599 + THE1C LTR MaLR 1 375 0 6092 102 18 1 chr15 23149155 23150506 -62545248 + L1PA10 LINE L1 4771 6152 -16 3155 214 63 19 chr15 23150508 23152132 -62543622 - L1MC2 LINE L1 -195 6960 5268 1001 99 0 138 chr15 23152135 23152316 -62543438 + AluY SINE Alu 1 156 -155 222 191 0 0 chr15 23152931 23152973 -62542781 + C-rich Low_complexity Low_complexity 1 42 0 1176 134 12 0 chr15 23153136 23153308 -62542446 + AluSg/x SINE Alu 125 298 -12 683 277 80 11 chr15 23153310 23153660 -62542094 - L1MC2 LINE L1 -1678 5279 4906 * 1217 247 55 67 chr15 23153655 23154323 -62541431 - L1MC2 LINE L1 -4764 2195 1521 239 0 32 0 chr15 23154323 23154354 -62541400 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2037 134 3 3 chr15 23154359 23154658 -62541096 - AluSx SINE Alu -13 299 1 1217 247 55 67 chr15 23154658 23155003 -62540751 - L1MC2 LINE L1 -5442 1517 1187 2605 230 72 61 chr15 23155195 23155754 -62540000 - L1MC2 LINE L1 -5510 1349 797 2094 138 10 0 chr15 23155754 23156052 -62539702 - AluSx SINE Alu -11 301 1 2605 230 72 61 chr15 23156052 23156699 -62539055 - L1MC2 LINE L1 -6062 797 11 517 238 238 28 chr15 23157785 23157999 -62537755 - MIR SINE MIR -1 261 3 1196 277 56 12 chr15 23158753 23159172 -62536582 + LTR16A LTR ERVL 1 446 -4 244 352 94 13 chr15 23159239 23159472 -62536282 + L2 LINE L2 2382 2633 -681 372 275 50 63 chr15 23159488 23159710 -62536044 + LTR16C LTR ERVL 1 219 -272 1604 91 91 0 chr15 23159711 23159930 -62535824 + AluSc SINE Alu 60 298 -11 2679 180 112 26 chr15 23159940 23160619 -62535135 - LTR39 LTR ERV1 -7 776 40 475 279 34 7 chr15 23160662 23160809 -62534945 + LTR16C LTR ERVL 273 423 -68 237 226 0 0 chr15 23160837 23160890 -62534864 - LTR16C LTR ERVL 0 491 439 5487 114 35 23 chr15 23161764 23162780 -62532974 - L1MA4A LINE L1 -1 6302 5274 4407 114 20 1 chr15 23162751 23163450 -62532304 - L1PA8 LINE L1 0 6172 5461 * 3338 179 52 3 chr15 23163453 23164207 -62531547 - L1 LINE L1 -816 5330 4540 10921 32 3 1 chr15 23164208 23166503 -62529251 - L1PA3 LINE L1 -1 6154 3870 799 146 18 0 chr15 23166718 23166937 -62528817 - L1MA2 LINE L1 -14 6290 6023 206 125 94 0 chr15 23167278 23167374 -62528380 + (TATAA)n Simple_repeat Simple_repeat 5 109 0 * 258 119 56 40 chr15 23167360 23167486 -62528268 + (TA)n Simple_repeat Simple_repeat 2 129 0 262 149 75 46 chr15 23167506 23167680 -62528074 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 280 218 53 29 chr15 23167553 23167723 -62528031 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 240 143 67 0 chr15 23167735 23167854 -62527900 + (TATAA)n Simple_repeat Simple_repeat 3 129 0 83 42 0 0 chr15 23167854 23167972 -62527782 + AT_rich Low_complexity Low_complexity 1 118 0 185 101 30 81 chr15 23168047 23168146 -62527608 + (TATAA)n Simple_repeat Simple_repeat 1 94 0 226 173 19 0 chr15 23168153 23168205 -62527549 + (TA)n Simple_repeat Simple_repeat 2 54 0 6571 166 24 33 chr15 23168207 23169181 -62526573 - L1MA7 LINE L1 -12 6279 5297 2360 139 17 5 chr15 23169181 23169584 -62526170 - L1PA16 LINE L1 -9 6157 5750 6571 166 24 33 chr15 23169584 23170417 -62525337 - L1MA7 LINE L1 -994 5297 4497 2687 131 47 132 chr15 23170417 23171075 -62524679 + MER7C DNA MER2_type 1 602 0 6571 166 24 33 chr15 23171075 23171549 -62524205 - L1MA7 LINE L1 -1794 4497 4020 325 59 0 59 chr15 23172116 23172167 -62523587 + Tigger3(Golem) DNA MER2_type 2711 2758 -271 255 396 79 10 chr15 23173304 23173506 -62522248 - LTR16B LTR ERVL -215 249 34 296 310 26 39 chr15 23173676 23173772 -62521982 - HERVL LTR ERVL -405 5359 5264 1861 162 113 38 chr15 23173772 23174197 -62521557 + MSTB2 LTR MaLR 1 457 0 296 310 26 39 chr15 23174197 23174255 -62521499 - HERVL LTR ERVL -500 5264 5207 1649 217 3 42 chr15 23174317 23174695 -62521059 + MLT1A2 LTR MaLR 1 363 -11 282 229 0 16 chr15 23174701 23174762 -62520992 - HERVL LTR ERVL -322 4674 4615 1242 367 52 8 chr15 23174819 23175882 -62519872 - HERVL LTR ERVL -708 5056 3922 336 305 59 0 chr15 23175881 23175999 -62519755 - HERVL LTR ERVL -1444 3552 3428 * 576 314 27 30 chr15 23176099 23176437 -62519317 - HERVL LTR ERVL -2093 3561 3225 * 1857 301 64 52 chr15 23176432 23177457 -62518297 - HERVL LTR ERVL -2374 2622 1585 2393 99 51 11 chr15 23177500 23177853 -62517901 - THE1C LTR MaLR 0 375 9 1496 304 93 51 chr15 23177878 23178195 -62517559 - HERVL LTR ERVL -3531 1465 1163 499 157 49 0 chr15 23178195 23178297 -62517457 - L1MB1 LINE L1 0 6168 6062 1496 304 93 51 chr15 23178297 23178739 -62517015 - HERVL LTR ERVL -3833 1163 674 900 271 89 67 chr15 23178870 23179093 -62516661 - HERVL LTR ERVL -4489 507 290 2037 134 7 13 chr15 23179093 23179400 -62516354 - AluSx SINE Alu -5 307 3 900 271 89 67 chr15 23179400 23179670 -62516084 - HERVL LTR ERVL -4706 290 3 317 343 37 0 chr15 23179947 23180055 -62515699 - LTR16A LTR ERVL -338 112 1 1421 237 65 61 chr15 23181752 23182292 -62513462 + MLT1F LTR MaLR 1 542 0 2997 192 47 17 chr15 23182827 23183461 -62512293 - MLT1E1 LTR MaLR -1 653 1 4586 138 22 12 chr15 23184608 23185379 -62510375 - L1PA16 LINE L1 0 6166 5388 11988 48 15 2 chr15 23185380 23186963 -62508791 + L1P LINE L1 3049 4651 -1495 371 331 0 0 chr15 23189388 23189509 -62506245 + A-rich Low_complexity Low_complexity 1 121 0 4713 206 41 8 chr15 23189625 23190710 -62505044 - L1 LINE L1 -1693 4453 3334 345 362 31 8 chr15 23190850 23190977 -62504777 + L2 LINE L2 3143 3272 0 686 259 100 104 chr15 23192394 23192848 -62502906 + MLT1H LTR MaLR 41 494 -55 494 60 0 0 chr15 23192848 23192915 -62502839 - L1PA3 LINE L1 -11 6144 6078 686 259 100 104 chr15 23192915 23192969 -62502785 + MLT1H LTR MaLR 494 547 -2 5201 95 17 24 chr15 23193303 23194113 -62501641 - L1MA1 LINE L1 -131 6171 5367 516 236 36 0 chr15 23195281 23195391 -62500363 - MIR SINE MIR -138 124 11 3586 206 69 29 chr15 23195725 23196552 -62499202 - MER21B LTR ERV1 -2 861 2 569 159 16 24 chr15 23196817 23196943 -62498811 - L1MA6 LINE L1 -5 6295 6171 559 225 33 0 chr15 23196956 23197107 -62498647 - L1MB7 LINE L1 0 7246 7091 2592 182 30 18 chr15 23197108 23197887 -62497867 - L1MB7 LINE L1 -393 6847 6064 291 304 12 12 chr15 23197918 23198079 -62497675 - L1MA4 LINE L1 -9 6291 6131 480 234 47 0 chr15 23198795 23198902 -62496852 - AluSq/x SINE Alu -191 122 11 8734 195 116 17 chr15 23198917 23202814 -62492940 - L1MB7 LINE L1 -2621 4587 1 1096 219 43 21 chr15 23202833 23203162 -62492592 - L1M4 LINE L1 -1147 4999 4664 316 242 0 63 chr15 23203361 23203456 -62492298 - L1MC4 LINE L1 -1339 6703 6615 713 271 0 11 chr15 23204634 23204822 -62490932 - LTR16B LTR ERVL -47 417 232 2076 196 28 3 chr15 23205498 23205890 -62489864 + MSTA LTR MaLR 27 428 0 9254 166 29 9 chr15 23205909 23207522 -62488232 + MSTA-int LTR MaLR 7 1651 0 2238 180 22 12 chr15 23207526 23207942 -62487812 + MSTA LTR MaLR 5 424 -4 797 288 68 22 chr15 23208282 23208605 -62487149 + MLT1I LTR MaLR 34 371 -38 206 283 17 0 chr15 23208761 23208821 -62486933 + MIR SINE MIR 120 180 -82 * 361 230 36 3 chr15 23208799 23208899 -62486855 - MIR SINE MIR -84 124 21 27 0 0 0 chr15 23209025 23209052 -62486702 + AT_rich Low_complexity Low_complexity 1 27 0 403 177 21 52 chr15 23210171 23210267 -62485487 - LTR33 LTR ERVL -6 515 423 1117 80 16 106 chr15 23210577 23210873 -62484881 - L1P4 LINE L1 -715 5459 5186 2325 208 28 44 chr15 23210873 23211514 -62484240 - L1M4 LINE L1 -819 5327 4697 324 302 201 13 chr15 23211546 23211705 -62484049 - L1MEd LINE L1 -4971 1148 960 5682 186 30 22 chr15 23211924 23214186 -62481568 - L1MA4A LINE L1 -34 6269 3994 13951 62 3 0 chr15 23214353 23216106 -62479648 - L1P LINE L1 -4366 1780 23 986 168 5 25 chr15 23216150 23216347 -62479407 - AluSq SINE Alu -8 305 113 2395 75 3 6 chr15 23216713 23217047 -62478707 + L1PA3 LINE L1 5821 6153 -2 11537 212 29 9 chr15 23217047 23220517 -62475237 - L1PA15-16 LINE L1 -766 6083 2550 925 367 8 25 chr15 23220720 23221197 -62474557 - L1PA15-16 LINE L1 -6317 522 54 4378 157 26 5 chr15 23221216 23222026 -62473728 - L1MC1 LINE L1 0 6333 5507 4577 227 55 28 chr15 23222184 23223734 -62472020 - L1MC1 LINE L1 -745 5401 3849 1511 221 43 38 chr15 23223803 23224220 -62471534 + LTR52 LTR ERVL 1 419 -2 1048 232 32 53 chr15 23224221 23224506 -62471248 + LTR52-int LTR ERVL 3 281 -3275 1066 226 10 83 chr15 23224507 23224892 -62470862 - MLT1A2 LTR MaLR 0 374 18 1538 238 42 8 chr15 23224905 23225284 -62470470 + LTR52-int LTR ERVL 276 667 -2889 5395 204 67 90 chr15 23225309 23225366 -62470388 + LTR52-int LTR ERVL 799 856 -2700 2176 113 0 7 chr15 23225366 23225667 -62470087 + AluSq SINE Alu 1 299 -14 5395 204 67 90 chr15 23225667 23226271 -62469483 + LTR52-int LTR ERVL 856 1473 -2083 2091 103 0 0 chr15 23226271 23226543 -62469211 + AluSc SINE Alu 1 272 -37 5395 204 67 90 chr15 23226543 23228474 -62467280 + LTR52-int LTR ERVL 1473 3554 -2 1253 209 39 61 chr15 23228476 23228887 -62466867 + LTR52 LTR ERVL 1 402 -19 1809 199 35 0 chr15 23231188 23231585 -62464169 + L1M2 LINE L1 3754 4164 -1982 1598 176 44 34 chr15 23231586 23231881 -62463873 + AluJo SINE Alu 1 298 -14 5963 142 63 18 chr15 23231906 23233058 -62462696 - Tigger3b DNA MER2_type -27 1204 1 4933 155 42 48 chr15 23233058 23234692 -62461062 + L1M2 LINE L1 4163 5785 -506 214 235 20 0 chr15 23234694 23234745 -62461009 + (TA)n Simple_repeat Simple_repeat 2 53 0 921 217 142 8 chr15 23234745 23235121 -62460633 - MER57A LTR ERV1 -2 401 10 581 319 65 21 chr15 23235121 23235460 -62460294 - MER110-int LTR ERV1 -389 7148 6795 2009 92 4 4 chr15 23235652 23235914 -62459840 + AluY SINE Alu 35 296 -15 931 233 25 67 chr15 23236517 23236831 -62458923 - MER110-int LTR ERV1 -1370 6167 5867 3395 108 16 63 chr15 23237032 23237606 -62458148 - LTR10B LTR ERV1 0 547 1 469 332 36 36 chr15 23237612 23237998 -62457756 - MER110-int LTR ERV1 -2117 2530 2145 1645 235 12 45 chr15 23238016 23238510 -62457244 - MER110-int LTR ERV1 -1784 5753 5276 1845 120 60 21 chr15 23239944 23240227 -62455527 - AluSx SINE Alu -18 294 1 31 0 0 0 chr15 23240844 23240875 -62454879 + AT_rich Low_complexity Low_complexity 1 31 0 550 284 155 24 chr15 23241247 23241628 -62454126 - MER57B LTR ERV1 0 434 4 2429 147 35 27 chr15 23241654 23242143 -62453611 + L1MA8 LINE L1 5781 6273 -18 986 320 54 0 chr15 23243022 23243412 -62452342 + LTR16A LTR ERVL 26 436 -14 318 306 54 72 chr15 23244400 23244622 -62451132 + L1MC5 LINE L1 6613 6830 -1131 711 286 94 10 chr15 23244967 23245264 -62450490 + L2 LINE L2 2826 3147 -166 210 349 162 25 chr15 23245456 23245783 -62449971 - L2 LINE L2 -398 2916 2545 255 262 107 12 chr15 23245969 23246053 -62449701 + L2 LINE L2 2255 2346 -968 270 296 70 35 chr15 23246053 23246195 -62449559 - L2 LINE L2 -1089 2225 2079 1870 122 44 0 chr15 23248523 23248825 -62446929 + AluSx SINE Alu 1 314 0 1286 177 97 10 chr15 23249101 23249389 -62446365 + MER31B LTR ERV1 146 458 -8 535 50 12 12 chr15 23249493 23249573 -62446181 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 1171 163 30 0 chr15 23249813 23250015 -62445739 - MER3 DNA MER1_type -1 208 1 231 342 91 15 chr15 23250349 23250548 -62445206 + MIR SINE MIR 48 261 -1 32 26 0 0 chr15 23250627 23250666 -62445088 + AT_rich Low_complexity Low_complexity 1 39 0 225 0 0 0 chr15 23252676 23252701 -62443053 + (TG)n Simple_repeat Simple_repeat 2 26 0 647 122 29 36 chr15 23253775 23253914 -62441840 + L1MA1 LINE L1 5962 6099 -203 828 270 117 70 chr15 23254242 23255259 -62440495 - HAL1 LINE L1 -10 2497 1433 441 190 31 8 chr15 23255836 23256105 -62439649 + (TA)n Simple_repeat Simple_repeat 1 275 0 2191 65 13 48 chr15 23259772 23260082 -62435672 + AluSp SINE Alu 1 299 -14 436 276 39 32 chr15 23260824 23260980 -62434774 - HERV16 LTR ERVL -4839 157 1 772 293 61 53 chr15 23260986 23261345 -62434409 - LTR16A LTR ERVL -6 444 83 251 246 0 14 chr15 23262324 23262393 -62433361 + (TA)n Simple_repeat Simple_repeat 1 68 0 349 326 150 27 chr15 23262427 23263119 -62432635 - L1MC/D LINE L1 -748 5398 5004 9994 74 10 30 chr15 23263690 23265076 -62430678 - SVA Other Other 0 1386 29 2538 118 31 24 chr15 23265756 23266181 -62429573 + MSTA LTR MaLR 1 428 0 1088 207 22 78 chr15 23266633 23266904 -62428850 - MLT2B3 LTR ERVL -74 480 225 333 316 167 11 chr15 23266905 23267168 -62428586 - L1MC/D LINE L1 -1954 4192 3889 232 271 51 0 chr15 23267556 23267615 -62428139 + L2 LINE L2 3228 3289 -24 433 205 49 0 chr15 23268198 23268320 -62427434 + L1MC5 LINE L1 7752 7879 -82 481 292 34 53 chr15 23269766 23269975 -62425779 + LTR16C LTR ERVL 52 256 -235 370 279 29 87 chr15 23270651 23270927 -62424827 - L2 LINE L2 -7 3265 3006 271 286 36 9 chr15 23271577 23271689 -62424065 + L1MC4a LINE L1 6055 6169 -1639 2023 143 3 0 chr15 23271779 23272079 -62423675 + AluJb SINE Alu 1 301 -11 702 207 83 0 chr15 23272321 23272490 -62423264 + MIR SINE MIR 59 241 -21 260 175 16 16 chr15 23273435 23273498 -62422256 - L1M3e LINE L1 -6448 582 520 1787 232 79 24 chr15 23273908 23274084 -62421670 - L1ME1 LINE L1 0 6184 6019 2440 120 19 0 chr15 23274084 23274452 -62421302 - THE1C LTR MaLR 0 375 1 1787 232 79 24 chr15 23274452 23274933 -62420821 - L1ME1 LINE L1 -165 6019 5486 250 327 34 42 chr15 23274976 23275239 -62420515 - HERV16 LTR ERVL -1995 3490 3230 1010 319 55 29 chr15 23275277 23275997 -62419757 - HERV16 LTR ERVL -1900 3096 2422 559 311 134 10 chr15 23276051 23276350 -62419404 - HERV16 LTR ERVL -3864 1132 797 533 314 39 24 chr15 23276462 23276717 -62419037 - HERV16 LTR ERVL -4332 664 406 290 322 13 7 chr15 23276797 23276949 -62418805 + (TA)n Simple_repeat Simple_repeat 1 153 0 411 283 59 47 chr15 23277015 23277247 -62418507 + HAL1b LINE L1 219 402 -946 1742 94 0 0 chr15 23278034 23278258 -62417496 + AluY SINE Alu 87 310 -1 2476 143 41 101 chr15 23278326 23278982 -62416772 + L1MA9 LINE L1 5696 6312 0 6182 58 10 0 chr15 23279383 23280210 -62415544 - L1PA6 LINE L1 0 6154 5320 247 240 0 0 chr15 23280270 23280320 -62415434 + L1M1 LINE L1 932 981 -6584 821 196 121 86 chr15 23280596 23281096 -62414658 + LTR1B LTR ERV1 422 983 -37 442 285 76 7 chr15 23281111 23281255 -62414499 + LTR28 LTR ERV1 867 1020 0 517 161 0 2 chr15 23281255 23281362 -62414392 - L1MC3 LINE L1 -506 7489 7190 24 0 0 0 chr15 23281433 23281457 -62414297 + AT_rich Low_complexity Low_complexity 1 24 0 2313 102 0 0 chr15 23283007 23283301 -62412453 + AluY SINE Alu 1 294 -17 1013 309 32 22 chr15 23283564 23283966 -62411788 + LTR16A LTR ERVL 21 426 -24 5446 183 55 2 chr15 23284985 23286725 -62409029 + L1PA15 LINE L1 3984 5797 -369 1803 173 51 36 chr15 23286726 23287266 -62408488 - MLT2A2 LTR ERVL 0 554 3 994 153 90 0 chr15 23287269 23287458 -62408296 + L1PA15 LINE L1 5779 5984 -181 28 0 0 0 chr15 23287831 23287859 -62407895 + AT_rich Low_complexity Low_complexity 1 28 0 1586 199 54 70 chr15 23290104 23290661 -62405093 - L1MA10 LINE L1 0 7753 7206 1669 237 119 30 chr15 23290662 23291159 -62404595 + MLT2B3 LTR ERVL 6 546 -8 6143 181 32 21 chr15 23291163 23293072 -62402682 - L1MA10 LINE L1 -532 7199 5255 2928 145 49 57 chr15 23293073 23293688 -62402066 + Tigger1 DNA MER2_type 2 611 -1807 85 20 0 0 chr15 23293693 23293792 -62401962 + AT_rich Low_complexity Low_complexity 1 99 0 3524 146 17 3 chr15 23293804 23294394 -62401360 + L1PA15 LINE L1 5567 6164 -1 745 117 124 0 chr15 23294397 23294534 -62401220 + Tigger1 DNA MER2_type 609 762 -1656 517 157 28 19 chr15 23294555 23294663 -62401091 - L1PA16 LINE L1 -20 6146 6038 6534 142 40 23 chr15 23294663 23295041 -62400713 + Tigger1 DNA MER2_type 1203 1573 -845 1494 204 6 54 chr15 23295041 23295177 -62400577 + AluJb SINE Alu 1 142 -170 2140 138 0 0 chr15 23295177 23295475 -62400279 + AluSx SINE Alu 1 298 -14 1494 204 6 54 chr15 23295475 23295652 -62400102 + AluJb SINE Alu 142 299 -13 6534 142 40 23 chr15 23295652 23296144 -62399610 + Tigger1 DNA MER2_type 1573 2101 -317 1513 202 13 23 chr15 23296144 23296446 -62399308 + AluJo SINE Alu 1 299 -13 6534 142 40 23 chr15 23296446 23296770 -62398984 + Tigger1 DNA MER2_type 2101 2418 0 2382 203 43 15 chr15 23296770 23297445 -62398309 - L1MA10 LINE L1 -2309 5256 4563 5418 140 25 3 chr15 23297608 23299511 -62396243 - L1PA15 LINE L1 -2 6814 4898 3905 219 56 10 chr15 23299516 23300537 -62395217 - L1PA15 LINE L1 -3953 2844 1724 216 0 0 0 chr15 23300537 23300561 -62395193 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3905 219 56 10 chr15 23300561 23301082 -62394672 - L1PA15 LINE L1 -5073 1724 1228 253 337 50 20 chr15 23301417 23301518 -62394236 - L1PA15 LINE L1 -5905 882 779 728 254 8 58 chr15 23301532 23301792 -62393962 - L1PA15 LINE L1 -6115 672 426 3264 247 56 55 chr15 23301798 23301835 -62393919 - L1MA10 LINE L1 -3011 4554 4519 1682 185 6 28 chr15 23301835 23302154 -62393600 - AluJb SINE Alu 0 312 1 3264 247 56 55 chr15 23302154 23302400 -62393354 - L1MA10 LINE L1 -3046 4519 4275 2262 110 0 0 chr15 23302400 23302699 -62393055 - AluSq SINE Alu -14 299 1 3264 247 56 55 chr15 23302699 23304923 -62390831 - L1MA10 LINE L1 -3290 4275 2086 703 254 116 73 chr15 23305044 23305442 -62390312 - LTR1B LTR ERV1 -411 415 1 1974 185 36 25 chr15 23305442 23305891 -62389863 + L1MC3 LINE L1 7275 7728 -57 6624 22 19 0 chr15 23305898 23306717 -62389037 - L1PA3 LINE L1 -1 6154 5320 553 258 16 0 chr15 23306777 23306901 -62388853 + L1M1 LINE L1 932 1057 -6508 1145 150 14 19 chr15 23306905 23307112 -62388642 + MER52A-int LTR ERV1 1308 1513 -5578 4736 165 44 24 chr15 23307197 23308624 -62387130 + MER52A-int LTR ERV1 1006 4817 -2179 2583 121 28 26 chr15 23308614 23309078 -62386676 + MER52A-int LTR ERV1 2300 2764 -2453 * 941 105 20 0 chr15 23309075 23309227 -62386527 + MER52A-int LTR ERV1 5920 6074 -1131 * 1405 154 55 31 chr15 23309229 23309521 -62386233 + MER52A-int LTR ERV1 4918 5216 -1 7124 169 149 39 chr15 23309522 23311103 -62384651 + MER52A LTR ERV1 1 1755 0 637 224 73 24 chr15 23311133 23311221 -62384533 - L1MB7 LINE L1 -53 6131 6049 2273 116 0 0 chr15 23311221 23311514 -62384240 + AluSg SINE Alu 6 298 -12 637 224 73 24 chr15 23311514 23311671 -62384083 - L1MB7 LINE L1 -135 6049 5874 300 27 0 0 chr15 23311671 23311708 -62384046 + (TG)n Simple_repeat Simple_repeat 2 38 0 344 171 23 34 chr15 23311726 23311814 -62383940 - AluSp/q SINE Alu -9 294 208 2326 109 0 0 chr15 23312572 23312875 -62382879 - AluSx SINE Alu -8 304 2 772 226 96 13 chr15 23312981 23313218 -62382536 - MIR SINE MIR -1 261 1 2337 93 7 0 chr15 23313508 23313809 -62381945 - AluSx SINE Alu -9 303 1 1262 139 57 0 chr15 23313809 23314053 -62381701 - L1MB7 LINE L1 -311 5873 5616 * 3031 223 16 34 chr15 23314049 23314938 -62380816 - L1M4 LINE L1 -1833 4811 3939 1129 225 47 108 chr15 23315333 23316128 -62379626 - L1M4 LINE L1 -2865 3779 3032 424 271 39 58 chr15 23316356 23316614 -62379140 - L1M4 LINE L1 -5924 618 366 235 185 46 0 chr15 23316865 23316930 -62378824 - L1M4 LINE L1 -6420 122 55 225 65 0 0 chr15 23317379 23317410 -62378344 + (CAAAAA)n Simple_repeat Simple_repeat 3 33 0 721 172 52 15 chr15 23317445 23317579 -62378175 + FLAM_C SINE Alu 4 142 -1 653 158 7 48 chr15 23318863 23319009 -62376745 - L1MA4 LINE L1 -59 6241 6102 2064 138 3 0 chr15 23320152 23320443 -62375311 - AluSx SINE Alu -20 292 1 1079 236 80 21 chr15 23322096 23322255 -62373499 + L1MA1 LINE L1 17 165 -7400 2654 170 38 68 chr15 23322255 23322886 -62372868 - LTR9 LTR ERV1 0 612 1 1079 236 80 21 chr15 23322886 23323053 -62372701 + L1MA1 LINE L1 165 362 -7203 19009 162 61 13 chr15 23323465 23330447 -62365307 + L1MA1 LINE L1 176 7534 -187 1835 141 18 3 chr15 23330447 23330731 -62365023 - AluSx SINE Alu -24 288 1 19009 162 61 13 chr15 23330731 23330929 -62364825 + L1MA1 LINE L1 7534 7721 0 226 227 30 0 chr15 23333628 23333694 -62362060 + L1MC4 LINE L1 6636 6703 -1339 274 245 11 11 chr15 23333696 23333790 -62361964 + (TA)n Simple_repeat Simple_repeat 2 95 0 3486 108 16 6 chr15 23334428 23334937 -62360817 - MER75 DNA T2_type 0 514 1 1679 125 14 25 chr15 23335064 23335343 -62360411 - L1PA15 LINE L1 -147 6018 5743 8868 218 136 27 chr15 23335447 23336388 -62359366 - L1PA15 LINE L1 -620 5545 4708 2527 57 0 0 chr15 23336388 23336686 -62359068 + AluY SINE Alu 1 298 -13 8868 218 136 27 chr15 23336686 23338634 -62357120 - L1PA15 LINE L1 -1457 4708 2330 2147 262 49 31 chr15 23338734 23338899 -62356855 + L1M4 LINE L1 3064 3225 -2921 2327 87 0 3 chr15 23338899 23339209 -62356545 + AluY SINE Alu 1 309 -2 2147 262 49 31 chr15 23339209 23339840 -62355914 + L1M4 LINE L1 3225 3874 -2272 1584 207 53 79 chr15 23339921 23340237 -62355517 + L1M4 LINE L1 4704 4998 -1148 1736 183 0 3 chr15 23340237 23340521 -62355233 + AluJo SINE Alu 4 286 -26 1584 207 53 79 chr15 23340521 23340823 -62354931 + L1M4 LINE L1 4998 5306 -840 531 196 84 56 chr15 23340857 23341036 -62354718 + L1ME1 LINE L1 4574 4757 -1389 1445 83 5 0 chr15 23341037 23341229 -62354525 + AluY SINE Alu 119 311 0 2340 218 99 28 chr15 23341312 23342183 -62353571 + L1ME1 LINE L1 5180 6122 -44 2122 101 109 3 chr15 23342338 23342705 -62353049 - L1PA13 LINE L1 -4 6159 5754 1108 107 0 7 chr15 23342713 23342863 -62352891 - AluSq/x SINE Alu -163 149 1 446 103 0 0 chr15 23342864 23342932 -62352822 - L1PA13 LINE L1 -1815 4331 4264 487 161 23 0 chr15 23342933 23343020 -62352734 + AluSp/q SINE Alu 168 256 -57 3401 195 44 10 chr15 23343122 23344020 -62351734 - L1MB3 LINE L1 -249 5934 4957 2275 115 0 3 chr15 23344020 23344325 -62351429 + AluSq SINE Alu 3 306 -7 3401 195 44 10 chr15 23344325 23344915 -62350839 - L1MB3 LINE L1 -1226 4957 4389 456 183 9 43 chr15 23344926 23345041 -62350713 - LTR7 LTR ERV1 -38 412 302 535 180 5 111 chr15 23345116 23345305 -62350449 - L1MB3 LINE L1 -1752 4394 4226 2292 196 48 38 chr15 23345683 23346209 -62349545 + MER44D DNA MER2_type 2 587 -18 346 299 88 69 chr15 23346243 23346460 -62349294 + LTR16C LTR ERVL 189 409 -82 513 286 6 24 chr15 23347213 23347381 -62348373 - LTR33 LTR ERVL -356 165 1 207 0 0 0 chr15 23347406 23347429 -62348325 + (CA)n Simple_repeat Simple_repeat 2 24 0 4208 106 8 0 chr15 23348407 23349009 -62346745 - L1PA14 LINE L1 -3 6158 5552 1169 346 20 9 chr15 23349451 23349905 -62345849 + L1MEc LINE L1 139 597 -5799 926 199 77 11 chr15 23349906 23350178 -62345576 + L1MEc LINE L1 648 937 -5459 4099 255 59 45 chr15 23350233 23351076 -62344678 + L1MEc LINE L1 1043 1873 -4342 2016 147 138 5 chr15 23351076 23351512 -62344242 + LTR54B LTR ERV1 4 497 -1 4099 255 59 45 chr15 23351512 23351897 -62343857 + L1MEc LINE L1 1873 2251 -3964 2070 104 0 72 chr15 23351897 23352215 -62343539 + AluSq SINE Alu 1 295 -18 4099 255 59 45 chr15 23352215 23352328 -62343426 + L1MEc LINE L1 2251 2361 -3854 2238 67 0 14 chr15 23352328 23352611 -62343143 + AluY SINE Alu 33 311 0 4099 255 59 45 chr15 23352611 23354108 -62341646 + L1MEc LINE L1 2361 3920 -2295 1768 248 93 31 chr15 23354129 23354795 -62340959 + L1MCb LINE L1 1 707 -5338 1022 139 7 0 chr15 23354796 23354947 -62340807 + AluSp SINE Alu 136 287 -26 1428 194 41 77 chr15 23354964 23355321 -62340433 + L1MCb LINE L1 690 1049 -5144 236 105 26 0 chr15 23355321 23355359 -62340395 - U2 snRNA snRNA -145 43 5 1428 194 41 77 chr15 23355359 23355599 -62340155 + L1MCb LINE L1 1049 1296 -4897 1213 207 73 25 chr15 23355640 23356144 -62339610 + L1MCb LINE L1 1748 2146 -4418 2050 236 20 35 chr15 23356147 23356698 -62339056 - LTR55 LTR ERV -5 543 1 1292 240 64 20 chr15 23356790 23357467 -62338287 + L1MCb LINE L1 2286 2981 -3583 243 257 0 14 chr15 23359682 23359752 -62336002 + LTR16B LTR ERVL 104 172 -292 591 264 58 0 chr15 23359795 23359950 -62335804 + LTR16C LTR ERVL 324 487 -4 1867 233 136 14 chr15 23361279 23361764 -62333990 + MLT2F LTR ERVL 1 544 -119 288 324 14 7 chr15 23362552 23362691 -62333063 + LTR16C LTR ERVL 351 490 -1 9576 195 55 11 chr15 23363635 23366003 -62329751 - L1 LINE L1 -1493 5613 3142 2199 246 67 49 chr15 23366085 23366209 -62329545 - L1 LINE L1 -3958 3148 3028 1800 236 31 12 chr15 23366209 23366633 -62329121 - MSTB1 LTR MaLR 0 432 1 2199 246 67 49 chr15 23366633 23368785 -62326969 - L1 LINE L1 -4078 3028 1 1272 146 14 9 chr15 23369932 23370144 -62325610 + MSTA LTR MaLR 216 428 0 430 114 0 0 chr15 23371434 23371504 -62324250 + LTR23 LTR ERV1 368 437 0 480 179 0 0 chr15 23371504 23371599 -62324155 - L1M4 LINE L1 -723 5455 5361 1881 186 64 66 chr15 23371599 23372127 -62323627 - Tigger1 DNA MER2_type 0 2418 1892 658 211 8 0 chr15 23372128 23372261 -62323493 - FLAM_C SINE Alu -1 142 9 2761 101 11 46 chr15 23372265 23372592 -62323162 - Tigger1 DNA MER2_type -503 1915 1609 2510 55 0 0 chr15 23372592 23372885 -62322869 - AluY SINE Alu -18 293 1 2761 101 11 46 chr15 23372885 23373032 -62322722 - Tigger1 DNA MER2_type -809 1609 1458 1451 137 19 4 chr15 23373033 23373303 -62322451 - L1P LINE L1 -1584 4562 4289 265 325 24 24 chr15 23373404 23373530 -62322224 + LTR16C LTR ERVL 210 335 -156 186 290 108 21 chr15 23374694 23374787 -62320967 + MIR SINE MIR 85 185 -77 1836 171 26 11 chr15 23376411 23376792 -62318962 - L1MB5 LINE L1 -304 5870 5484 1156 176 7 37 chr15 23376812 23377084 -62318670 + LTR56 LTR ERV1 1 264 -181 4758 91 9 3 chr15 23377244 23377934 -62317820 - L1PA10 LINE L1 -39 6129 5436 2074 181 18 0 chr15 23377929 23378372 -62317382 - L1PA13 LINE L1 -2886 3911 3461 * 466 204 0 0 chr15 23378371 23378459 -62317295 - L1PA13 LINE L1 -5304 1483 1396 * 2764 273 125 6 chr15 23378462 23379284 -62316470 - L1PA13 LINE L1 -5529 1258 339 * 8842 144 171 12 chr15 23379282 23381011 -62314743 - L1PA12 LINE L1 -5577 2004 1 21 0 0 0 chr15 23382489 23382510 -62313244 + AT_rich Low_complexity Low_complexity 1 21 0 318 278 44 0 chr15 23383154 23383244 -62312510 - MIR3 SINE MIR -11 197 104 282 330 127 22 chr15 23383814 23384039 -62311715 + MIR SINE MIR 18 261 -1 2691 193 58 28 chr15 23384284 23384900 -62310854 + LTR27 LTR ERV1 2 636 0 1919 161 0 33 chr15 23385838 23386143 -62309611 - AluSx SINE Alu -17 295 1 1678 248 82 44 chr15 23386254 23386988 -62308766 + L1ME LINE L1 46 807 -5263 323 336 9 0 chr15 23389997 23390110 -62305644 + MER81 DNA DNA 1 114 0 380 288 42 47 chr15 23390111 23390302 -62305452 + L2 LINE L2 3124 3313 0 514 235 12 137 chr15 23391624 23391879 -62303875 + MER58A DNA MER1_type 1 223 -1 319 298 36 0 chr15 23392235 23392319 -62303435 - MIR3 SINE MIR -51 157 71 1716 112 42 0 chr15 23392389 23392675 -62303079 + L1MA6 LINE L1 6003 6300 0 227 203 122 14 chr15 23393658 23393732 -62302022 - MIR SINE MIR -107 155 74 200 98 0 49 chr15 23394650 23394691 -62301063 + (GGGA)n Simple_repeat Simple_repeat 4 42 0 379 331 139 12 chr15 23394876 23395048 -62300706 + MIR SINE MIR 20 213 -49 345 197 0 0 chr15 23396364 23396435 -62299319 + T-rich Low_complexity Low_complexity 1 71 0 14103 209 22 30 chr15 23397359 23401652 -62294102 - L1P3 LINE L1 -2185 4276 8 1842 221 29 58 chr15 23401663 23402284 -62293470 - L1M4 LINE L1 -784 5362 4760 306 118 0 0 chr15 23402319 23402370 -62293384 - L1MA8 LINE L1 -5 6286 6236 26 30 0 0 chr15 23402489 23402522 -62293232 + AT_rich Low_complexity Low_complexity 1 33 0 3610 179 4 30 chr15 23402531 23403397 -62292357 - L1MA4 LINE L1 -295 6005 5160 1779 189 27 2 chr15 23403390 23403798 -62291956 + L1MA4 LINE L1 4735 5152 -994 * 6159 232 84 22 chr15 23403792 23407105 -62288649 - L1MA8 LINE L1 -48 6243 2718 2408 87 0 6 chr15 23408020 23408332 -62287422 + AluY SINE Alu 1 310 -1 265 268 0 12 chr15 23409060 23409142 -62286612 - LTR16C LTR ERVL -4 487 407 26 64 0 0 chr15 23409817 23409864 -62285890 + AT_rich Low_complexity Low_complexity 1 47 0 2044 128 4 0 chr15 23409898 23410205 -62285549 + AluSx SINE Alu 1 308 0 190 235 59 123 chr15 23410418 23410605 -62285149 - L3 LINE CR1 -182 1395 1221 249 33 0 0 chr15 23410871 23410901 -62284853 + (T)n Simple_repeat Simple_repeat 1 30 0 359 323 39 43 chr15 23411250 23411660 -62284094 - MLT2F LTR ERVL 0 663 211 2453 117 13 122 chr15 23412321 23412711 -62283043 + LTR12 LTR ERV1 1 317 -397 1811 84 26 131 chr15 23412711 23413054 -62282700 - AluYb8 SINE Alu -1 307 1 2453 117 13 122 chr15 23413054 23413203 -62282551 + LTR12 LTR ERV1 317 481 -233 270 262 54 7 chr15 23413764 23413979 -62281775 + (TTTAA)n Simple_repeat Simple_repeat 1 225 0 3082 144 71 76 chr15 23415004 23415797 -62279957 - L1MA9 LINE L1 -2 6310 5522 1111 171 12 29 chr15 23415925 23416170 -62279584 - L1M3 LINE L1 -580 5591 5351 284 269 59 42 chr15 23417679 23417798 -62277956 + ERVL LTR ERVL 2133 2253 -3511 25 99 0 0 chr15 23417887 23417968 -62277786 + AT_rich Low_complexity Low_complexity 1 81 0 23 54 0 0 chr15 23418054 23418091 -62277663 + AT_rich Low_complexity Low_complexity 1 37 0 5963 109 27 0 chr15 23418110 23419183 -62276571 + L1PB1 LINE L1 5045 6151 0 21 0 0 0 chr15 23419206 23419227 -62276527 + AT_rich Low_complexity Low_complexity 1 21 0 1650 103 4 0 chr15 23419753 23419987 -62275767 - THE1C LTR MaLR -140 235 1 1463 245 45 5 chr15 23421641 23422020 -62273734 - MSTD LTR MaLR 0 396 3 914 177 33 6 chr15 23423848 23424029 -62271725 - MER2 DNA MER2_type -158 187 2 2428 65 0 0 chr15 23426069 23426379 -62269375 - L1PA7 LINE L1 -5 6149 5840 480 238 0 9 chr15 23426991 23427096 -62268658 - MER5B DNA MER1_type -73 105 2 247 294 67 50 chr15 23427409 23427589 -62268165 - L3 LINE CR1 -200 1377 1195 239 264 0 0 chr15 23427594 23427647 -62268107 - MIR3 SINE MIR -5 203 151 497 308 29 62 chr15 23429319 23429553 -62266201 - MIR SINE MIR -21 241 18 305 190 25 0 chr15 23429805 23429884 -62265870 + (TATATG)n Simple_repeat Simple_repeat 4 84 0 206 238 32 16 chr15 23430006 23430069 -62265685 - L3 LINE CR1 -875 702 639 212 213 16 0 chr15 23430562 23430623 -62265131 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 4596 162 39 31 chr15 23430667 23431686 -62264068 + L1MA9 LINE L1 5285 6311 -1 246 218 0 69 chr15 23431729 23431769 -62263985 + L1MC/D LINE L1 4176 4208 -1938 686 298 103 69 chr15 23431769 23432273 -62263481 + LTR33 LTR ERVL 1 521 0 246 218 0 69 chr15 23432273 23432319 -62263435 + L1MC/D LINE L1 4208 4256 -1890 343 242 116 37 chr15 23432359 23432574 -62263180 + L1MC/D LINE L1 4316 4547 -1599 562 244 114 12 chr15 23432743 23432983 -62262771 - MLT1G LTR MaLR -273 257 5 296 395 3 33 chr15 23433509 23433813 -62261941 - HERVL LTR ERVL -507 5147 4853 1560 339 48 22 chr15 23433876 23434929 -62260825 - HERVL LTR ERVL -3121 2533 1453 677 190 28 38 chr15 23435202 23435413 -62260341 - Charlie1 DNA MER1_type -1 2760 2552 1240 94 18 0 chr15 23435422 23435593 -62260161 - L1PA8 LINE L1 -11 6161 5988 4734 207 62 19 chr15 23435644 23436942 -62258812 - Charlie1a DNA MER1_type -101 1354 1 394 320 17 17 chr15 23437227 23437405 -62258349 - HERVL LTR ERVL -4456 540 363 180 0 0 0 chr15 23437507 23437527 -62258227 + (CA)n Simple_repeat Simple_repeat 2 21 0 184 135 19 19 chr15 23437566 23437618 -62258136 + (TA)n Simple_repeat Simple_repeat 2 53 0 425 291 52 72 chr15 23437806 23438057 -62257697 - LTR16C LTR ERVL -8 483 238 261 276 117 15 chr15 23438406 23438671 -62257083 + L1MC/D LINE L1 5015 5306 -840 372 303 35 19 chr15 23438735 23438932 -62256822 + L1MC/D LINE L1 5496 5704 -512 494 270 107 17 chr15 23439005 23439183 -62256571 + MIR SINE MIR 54 247 -15 337 258 33 67 chr15 23439316 23439436 -62256318 + MIR SINE MIR 147 262 0 4958 113 41 1 chr15 23439489 23440295 -62255459 + L1PA13 LINE L1 5317 6154 -9 280 260 1 0 chr15 23440991 23441111 -62254643 + MER5A DNA MER1_type 9 110 -79 205 298 0 0 chr15 23442921 23442978 -62252776 + T-rich Low_complexity Low_complexity 1 57 0 408 313 15 15 chr15 23442978 23443112 -62252642 - L2 LINE L2 -5 3267 3134 209 224 0 20 chr15 23443601 23443650 -62252104 + A-rich Low_complexity Low_complexity 2 49 0 542 345 121 42 chr15 23444574 23445119 -62250635 - L3 LINE CR1 -3 1574 987 2393 97 20 6 chr15 23445289 23445639 -62250115 - THE1A LTR MaLR 0 355 1 196 358 21 21 chr15 23445830 23445925 -62249829 + MIR SINE MIR 50 144 -64 3917 203 36 18 chr15 23446453 23447794 -62247960 - L1PA13 LINE L1 -4023 2774 1397 3681 214 55 25 chr15 23447982 23448847 -62246907 - L1PA13 LINE L1 -5895 892 2 623 292 63 47 chr15 23449177 23450127 -62245627 - L1MEd LINE L1 -4705 1605 602 225 309 143 37 chr15 23450172 23450389 -62245365 - L1MEd LINE L1 -5612 507 268 336 330 76 13 chr15 23450727 23451030 -62244724 - L1ME LINE L1 -348 5773 5452 261 231 356 0 chr15 23452841 23452949 -62242805 + MIR SINE MIR 37 180 -28 829 298 59 58 chr15 23453392 23453997 -62241757 + L2 LINE L2 2642 3305 -8 3843 122 64 73 chr15 23454362 23455143 -62240611 + LTR1 LTR ERV1 12 785 0 1295 55 114 64 chr15 23455945 23456164 -62239590 + MER30 DNA MER1_type 1 230 0 2155 131 0 10 chr15 23457379 23457684 -62238070 + AluSx SINE Alu 3 304 -8 211 329 57 0 chr15 23457874 23457944 -62237810 + MIR SINE MIR 39 112 -150 2136 106 3 14 chr15 23458124 23458416 -62237338 + AluSg SINE Alu 1 289 -21 555 262 85 13 chr15 23458434 23458626 -62237128 + MIR SINE MIR 15 221 -41 665 296 126 14 chr15 23459735 23459958 -62235796 + MIR SINE MIR 14 261 -1 320 323 10 0 chr15 23460215 23460311 -62235443 - MIR SINE MIR -111 151 55 207 0 0 0 chr15 23461358 23461381 -62234373 + (T)n Simple_repeat Simple_repeat 1 23 0 424 249 62 110 chr15 23462337 23462610 -62233144 - MER112 DNA MER1_type 0 260 1 280 133 48 24 chr15 23463222 23463305 -62232449 + (TA)n Simple_repeat Simple_repeat 2 86 0 412 342 49 4 chr15 23463668 23463893 -62231861 + LTR16C LTR ERVL 4 238 -253 3870 226 75 43 chr15 23463899 23464985 -62230769 + MLT1A1-int LTR MaLR 616 1735 0 1896 174 22 16 chr15 23464985 23465348 -62230406 + MLT1A1 LTR MaLR 1 365 0 2009 138 0 0 chr15 23465357 23465648 -62230106 + AluSx SINE Alu 1 291 -21 369 0 0 0 chr15 23467083 23467124 -62228630 + (TG)n Simple_repeat Simple_repeat 2 42 0 463 265 235 10 chr15 23467422 23467618 -62228136 - MIR SINE MIR -3 259 20 329 329 29 15 chr15 23467824 23467961 -62227793 + MIR SINE MIR 121 259 -3 219 311 48 17 chr15 23467990 23468127 -62227627 - MIR SINE MIR -64 144 15 212 300 0 0 chr15 23469302 23469352 -62226402 - L2 LINE L2 -4 3268 3219 565 211 126 53 chr15 23471372 23471541 -62224213 + MER5A DNA MER1_type 4 186 -3 1461 209 78 62 chr15 23471999 23472248 -62223506 - MLT1D LTR MaLR 0 505 261 2140 136 0 0 chr15 23472248 23472549 -62223205 - AluSx SINE Alu -9 303 3 1461 209 78 62 chr15 23472549 23472796 -62222958 - MLT1D LTR MaLR -244 261 1 409 228 53 18 chr15 23473238 23473352 -62222402 - MIR3 SINE MIR -7 201 84 346 200 171 0 chr15 23474957 23475062 -62220692 + L1ME4a LINE L1 5961 6083 -38 690 285 88 0 chr15 23476345 23476573 -62219181 + MIR SINE MIR 15 262 0 209 57 29 0 chr15 23476669 23476704 -62219050 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 589 291 69 34 chr15 23476811 23477061 -62218693 - MIR SINE MIR 0 262 9 222 290 18 41 chr15 23477822 23477991 -62217763 + (CTTAT)n Simple_repeat Simple_repeat 3 167 0 * 317 262 16 44 chr15 23477865 23478048 -62217706 + T-rich Low_complexity Low_complexity 2 179 0 401 252 67 0 chr15 23479072 23479191 -62216563 + MIR SINE MIR 65 191 -71 327 279 201 0 chr15 23480413 23480567 -62215187 - MIR SINE MIR -15 247 63 22 0 0 0 chr15 23482631 23482653 -62213101 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr15 23482945 23482969 -62212785 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr15 23483024 23483052 -62212702 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr15 23483126 23483158 -62212596 + AT_rich Low_complexity Low_complexity 1 32 0 1057 330 82 19 chr15 23483765 23484226 -62211528 - MLT2F LTR ERVL -157 506 17 1125 285 58 5 chr15 23484386 23485053 -62210701 - ERVL LTR ERVL -170 5484 4782 2944 232 45 34 chr15 23485113 23486376 -62209378 - L1ME1 LINE L1 -5 6397 5124 2341 71 0 52 chr15 23486376 23486701 -62209053 - AluY SINE Alu -3 308 1 412 276 15 4 chr15 23486759 23486906 -62208848 - L1ME1 LINE L1 -3857 2525 2381 23 33 0 0 chr15 23486926 23486956 -62208798 + AT_rich Low_complexity Low_complexity 1 30 0 183 386 63 8 chr15 23487131 23487258 -62208496 - L2 LINE L2 0 3313 3180 454 296 52 65 chr15 23487285 23487687 -62208067 - MLT1I LTR MaLR -8 401 5 681 295 36 39 chr15 23488939 23489198 -62206556 + MIR SINE MIR 16 261 -1 181 391 0 0 chr15 23489230 23489299 -62206455 + L2 LINE L2 2275 2343 -971 27 29 0 0 chr15 23490297 23490331 -62205423 + AT_rich Low_complexity Low_complexity 1 34 0 243 221 26 0 chr15 23490899 23490976 -62204778 + (TA)n Simple_repeat Simple_repeat 1 79 0 6814 44 1 0 chr15 23491236 23492072 -62203682 - L1P LINE L1 -1932 4214 3378 4924 30 0 0 chr15 23492072 23492645 -62203109 + L1PA3 LINE L1 5579 6152 -3 266 86 0 0 chr15 23492728 23492763 -62202991 + Tigger1 DNA MER2_type 2061 2095 -323 2369 189 6 2 chr15 23493578 23494085 -62201669 - L1PA16 LINE L1 -1336 4810 4302 2071 216 12 12 chr15 23494083 23494565 -62201189 + L1PA16 LINE L1 4804 5285 -861 * 636 105 0 32 chr15 23494574 23494669 -62201085 + FLAM_C SINE Alu 36 127 -16 4823 150 6 4 chr15 23494671 23495458 -62200296 + L1PA16 LINE L1 5340 6128 -38 1078 179 26 33 chr15 23495497 23495770 -62199984 - L1MB7 LINE L1 0 6184 5914 23 33 0 0 chr15 23495779 23495809 -62199945 + AT_rich Low_complexity Low_complexity 1 30 0 1128 185 45 0 chr15 23495822 23496044 -62199710 - L1MB7 LINE L1 -265 5919 5688 907 184 65 5 chr15 23496035 23496252 -62199502 - L1MB7 LINE L1 -1006 5140 4911 * 387 211 0 0 chr15 23497155 23497250 -62198504 + (TA)n Simple_repeat Simple_repeat 1 95 0 309 278 0 22 chr15 23497252 23497342 -62198412 - L1MC4 LINE L1 -1339 6703 6616 207 235 0 44 chr15 23497345 23497413 -62198341 + (TATG)n Simple_repeat Simple_repeat 4 68 0 396 332 197 0 chr15 23498300 23498493 -62197261 + MIR SINE MIR 14 244 -18 5414 45 3 3 chr15 23498555 23499229 -62196525 - L1PA3 LINE L1 -2 6153 5480 306 314 140 69 chr15 23499426 23500179 -62195575 + L2 LINE L2 2405 3262 -10 535 368 104 35 chr15 23500196 23500993 -62194761 + L2 LINE L2 2229 3086 -186 226 134 0 75 chr15 23503079 23503146 -62192608 + (TTTTTA)n Simple_repeat Simple_repeat 3 64 0 331 300 42 33 chr15 23503612 23503732 -62192022 + L2 LINE L2 3191 3311 -2 278 352 94 8 chr15 23504022 23504150 -62191604 + L2 LINE L2 3132 3270 -2 214 329 162 18 chr15 23505147 23505314 -62190440 - L3b LINE CR1 -210 1373 1183 353 307 13 0 chr15 23506473 23506548 -62189206 + MER91A DNA MER1_type 2 77 -119 1680 149 60 46 chr15 23508386 23508547 -62187207 + THE1C LTR MaLR 1 158 -217 1975 83 8 0 chr15 23508547 23508800 -62186954 - AluSq SINE Alu -9 304 50 1680 149 60 46 chr15 23508800 23509008 -62186746 + THE1C LTR MaLR 158 375 0 547 271 7 7 chr15 23509067 23509211 -62186543 + MIR3 SINE MIR 60 203 -5 22 0 0 0 chr15 23509760 23509782 -62185972 + AT_rich Low_complexity Low_complexity 1 22 0 479 211 0 10 chr15 23510574 23510678 -62185076 - MIR SINE MIR 0 262 160 272 368 14 49 chr15 23511397 23511541 -62184213 + MIR SINE MIR 29 167 -95 35 41 0 0 chr15 23511654 23511703 -62184051 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr15 23512021 23512049 -62183705 + AT_rich Low_complexity Low_complexity 1 28 0 197 306 0 0 chr15 23512975 23513024 -62182730 - MER5B DNA MER1_type -129 49 1 1501 167 46 25 chr15 23513937 23514219 -62181535 - AluJo SINE Alu -15 297 10 1113 299 144 11 chr15 23516733 23517443 -62178311 + L2 LINE L2 2497 3310 -3 219 221 47 35 chr15 23517823 23517909 -62177845 - MIR SINE MIR -46 216 130 2903 164 44 2 chr15 23518386 23518928 -62176826 - L1MC3 LINE L1 -8 7777 7213 22 35 0 0 chr15 23519319 23519348 -62176406 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 23519424 23519446 -62176308 + AT_rich Low_complexity Low_complexity 1 22 0 1228 202 0 18 chr15 23522700 23522923 -62172831 - AluJo SINE Alu -93 219 1 4614 135 12 1 chr15 23523199 23523947 -62171807 - L1PA16 LINE L1 0 6166 5411 1433 202 24 9 chr15 23524048 23524385 -62171369 - L1PA16 LINE L1 -1320 4826 4485 12356 238 41 23 chr15 23524648 23529702 -62166052 + L1PA15 LINE L1 808 5951 -1633 811 195 38 5 chr15 23529702 23529887 -62165867 + L1PA15 LINE L1 6318 6508 -1076 5257 130 28 6 chr15 23529889 23530744 -62165010 + L1PA15 LINE L1 6723 7596 -7 18648 29 0 0 chr15 23530887 23533133 -62162621 - L1P LINE L1 -743 5403 3158 183 220 0 0 chr15 23535309 23535359 -62160395 + CT-rich Low_complexity Low_complexity 2 51 0 226 364 155 35 chr15 23535532 23535906 -62159848 - L2 LINE L2 -556 2758 2340 4973 16 7 0 chr15 23536357 23536931 -62158823 - L1PA2 LINE L1 0 6155 5578 7991 28 0 0 chr15 23536931 23537906 -62157848 + L1P LINE L1 2600 3574 -2572 337 280 193 20 chr15 23538824 23538974 -62156780 - MIR SINE MIR -79 183 8 971 221 18 4 chr15 23539486 23539712 -62156042 + AluJo SINE Alu 82 310 -2 233 347 94 28 chr15 23539763 23539976 -62155778 - L2 LINE L2 -234 3038 2812 2770 133 48 9 chr15 23540285 23541157 -62154597 + L1PB4 LINE L1 5068 6113 -43 191 322 8 68 chr15 23541214 23541332 -62154422 + L2 LINE L2 2933 3043 -229 901 265 100 0 chr15 23541337 23541597 -62154157 - LTR16A1 LTR ERVL -4 453 168 2020 147 3 3 chr15 23543098 23543397 -62152357 - AluSx SINE Alu -13 299 1 564 320 39 58 chr15 23544047 23544406 -62151348 - LTR67 LTR ERVL 0 557 206 19616 47 6 2 chr15 23544428 23547688 -62148066 - L1PA5 LINE L1 -8 6146 2876 9525 57 17 1 chr15 23547688 23548924 -62146830 + L1PA5 LINE L1 1626 2881 -3265 272 211 70 28 chr15 23548942 23549013 -62146741 - LTR67 LTR ERVL -374 183 110 432 342 75 12 chr15 23549994 23550325 -62145429 - ERVL LTR ERVL -290 5364 5016 1152 291 138 54 chr15 23550560 23551398 -62144356 - ERVL LTR ERVL -1093 4671 3763 968 328 63 11 chr15 23551416 23551767 -62143987 + LTR16A LTR ERVL 77 445 -5 350 321 92 41 chr15 23551771 23552042 -62143712 - ERVL LTR ERVL -2068 3696 3412 589 303 23 46 chr15 23553012 23553230 -62142524 + MIR SINE MIR 50 262 0 434 300 0 0 chr15 23553740 23553860 -62141894 + MER103 DNA DNA 1 120 -46 976 203 147 0 chr15 23553897 23554163 -62141591 - MER33 DNA MER1_type -19 305 1 1979 144 21 0 chr15 23556074 23556414 -62139340 + L1PA13 LINE L1 5803 6149 -14 327 336 8 0 chr15 23556513 23556641 -62139113 + (TG)n Simple_repeat Simple_repeat 2 130 0 22 0 0 0 chr15 23556655 23556677 -62139077 + AT_rich Low_complexity Low_complexity 1 22 0 2104 125 0 7 chr15 23556725 23557022 -62138732 + AluSg SINE Alu 1 295 -15 327 307 100 42 chr15 23557465 23558096 -62137658 - L1ME3A LINE L1 -226 5944 5293 1333 311 64 37 chr15 23558225 23558931 -62136823 + L1MA7 LINE L1 10 1045 -6164 5415 230 58 35 chr15 23559136 23560727 -62135027 + L1MA7 LINE L1 1699 3252 -3956 2160 102 0 11 chr15 23560727 23561033 -62134721 - AluSg SINE Alu 0 303 1 5415 230 58 35 chr15 23561033 23562904 -62132850 + L1MA7 LINE L1 3252 4952 -2256 2285 188 12 82 chr15 23562906 23563476 -62132278 + L1P3 LINE L1 630 1159 -5302 6360 89 7 15 chr15 23563491 23564682 -62131072 + L1PA10 LINE L1 4979 6166 -2 7211 180 22 33 chr15 23564682 23565584 -62130170 + L1MA7 LINE L1 4942 5852 -1501 182 37 37 0 chr15 23565584 23565611 -62130143 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7211 180 22 33 chr15 23565611 23566860 -62128894 + L1MA7 LINE L1 5852 7064 -289 2250 112 0 6 chr15 23566860 23567174 -62128580 + AluSx SINE Alu 1 312 0 7211 180 22 33 chr15 23567174 23567460 -62128294 + L1MA7 LINE L1 7064 7352 -1 3399 68 0 0 chr15 23568121 23568575 -62127179 - L1P LINE L1 -844 5302 4849 3391 74 37 8 chr15 23568575 23569050 -62126704 + L1PA7 LINE L1 5653 6153 -1 2367 94 0 0 chr15 23569122 23569430 -62126324 - AluSc SINE Alu -1 308 1 487 222 0 0 chr15 23569922 23570012 -62125742 + AluSx SINE Alu 1 90 -222 1539 93 9 0 chr15 23570112 23570326 -62125428 + AluSx SINE Alu 87 302 -10 2393 87 0 0 chr15 23570558 23570867 -62124887 + AluY SINE Alu 1 309 -2 1622 224 74 2 chr15 23571114 23571521 -62124233 + MER63B DNA MER1_type 1 436 0 393 300 46 8 chr15 23571847 23571977 -62123777 + MIR SINE MIR 40 174 -88 491 202 8 0 chr15 23571995 23572114 -62123640 + (TA)n Simple_repeat Simple_repeat 1 120 0 404 234 114 13 chr15 23572235 23572393 -62123361 - L1MC4a LINE L1 -1897 5911 5738 1587 109 0 5 chr15 23572436 23572657 -62123097 - AluSc SINE Alu -8 301 82 285 281 0 97 chr15 23572815 23572856 -62122898 + MIR SINE MIR 160 203 -59 2300 93 3 0 chr15 23572856 23573157 -62122597 + AluSq SINE Alu 1 302 -11 285 281 0 97 chr15 23573157 23573229 -62122525 + MIR SINE MIR 203 262 0 1752 163 30 7 chr15 23574116 23574417 -62121337 - AluJb SINE Alu -4 308 1 396 59 0 0 chr15 23575221 23575272 -62120482 + (TG)n Simple_repeat Simple_repeat 1 51 0 514 353 75 18 chr15 23575640 23576079 -62119675 + L2 LINE L2 1836 2299 -1015 23 54 0 0 chr15 23576621 23576658 -62119096 + AT_rich Low_complexity Low_complexity 1 37 0 182 37 37 0 chr15 23576939 23576966 -62118788 + (TC)n Simple_repeat Simple_repeat 1 28 0 360 275 80 29 chr15 23577011 23577149 -62118605 - L3b LINE CR1 -192 1391 1247 1405 300 55 27 chr15 23577599 23578710 -62117044 + L1ME2 LINE L1 45 1058 -4920 1025 310 28 15 chr15 23578716 23579245 -62116509 + L1ME2 LINE L1 4463 4998 -1082 1760 249 102 33 chr15 23579260 23580172 -62115582 + L1ME2 LINE L1 5118 6098 0 233 311 0 0 chr15 23580237 23580311 -62115443 + L1MC4 LINE L1 7928 8001 -41 2193 89 45 0 chr15 23580376 23580667 -62115087 + AluSq SINE Alu 1 304 -9 38425 74 5 2 chr15 23580869 23587006 -62108748 + L1PA5 LINE L1 2 6153 -1 1430 252 117 21 chr15 23586990 23587685 -62108069 + L1ME1 LINE L1 5316 6136 -30 * 1335 165 37 0 chr15 23588367 23588639 -62107115 - L1MA8 LINE L1 -5 6286 6005 190 0 67 0 chr15 23588977 23589007 -62106747 + (TGGGGG)n Simple_repeat Simple_repeat 5 36 0 35 24 0 0 chr15 23590015 23590057 -62105697 + AT_rich Low_complexity Low_complexity 1 42 0 298 297 0 25 chr15 23590147 23590226 -62105528 + (CATATA)n Simple_repeat Simple_repeat 4 81 -37 1858 181 83 10 chr15 23590226 23590623 -62105131 - MSTB LTR MaLR 0 426 1 298 297 0 25 chr15 23590623 23590661 -62105093 + (CATATA)n Simple_repeat Simple_repeat 81 118 0 13670 129 29 13 chr15 23590676 23590982 -62104772 + Tigger1 DNA MER2_type 17 317 -2101 189 0 0 0 chr15 23590982 23591003 -62104751 + (TC)n Simple_repeat Simple_repeat 2 22 0 13670 129 29 13 chr15 23591003 23593060 -62102694 + Tigger1 DNA MER2_type 317 2418 0 24 32 0 0 chr15 23593376 23593407 -62102347 + AT_rich Low_complexity Low_complexity 1 31 0 2258 60 0 0 chr15 23593473 23593758 -62101996 - L1PA5 LINE L1 -4 6150 5866 32 0 0 0 chr15 23593763 23593795 -62101959 + AT_rich Low_complexity Low_complexity 1 32 0 512 260 109 82 chr15 23594040 23594344 -62101410 - L3 LINE CR1 -2 1575 1264 462 342 53 16 chr15 23594843 23595033 -62100721 + MIR SINE MIR 31 227 -35 201 132 0 0 chr15 23595517 23595555 -62100199 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 200 296 169 28 chr15 23595670 23595812 -62099942 - L2 LINE L2 -189 3083 2922 399 379 25 15 chr15 23596433 23596636 -62099118 - L2 LINE L2 -557 2757 2553 287 333 32 0 chr15 23596642 23596858 -62098896 + L1M4 LINE L1 4001 4223 -1923 288 297 66 42 chr15 23597264 23597476 -62098278 + MLT1L LTR MaLR 170 386 -229 291 299 170 51 chr15 23597523 23597918 -62097836 - L2 LINE L2 -1136 2178 1737 456 267 19 43 chr15 23599344 23599505 -62096249 + MIR3 SINE MIR 47 203 -5 4805 147 8 4 chr15 23600458 23601284 -62094470 - L1PA16 LINE L1 0 6166 5337 2898 212 24 4 chr15 23601278 23601980 -62093774 + L1PA16 LINE L1 4637 5352 -794 * 316 294 14 21 chr15 23602152 23602288 -62093466 + MIR SINE MIR 20 152 -73 198 0 0 0 chr15 23602536 23602558 -62093196 + (TA)n Simple_repeat Simple_repeat 2 23 0 233 236 0 0 chr15 23602558 23602613 -62093141 + T-rich Low_complexity Low_complexity 1 55 0 7042 18 0 1 chr15 23602632 23603489 -62092265 - L1PA3 LINE L1 -4 6151 5297 352 271 173 28 chr15 23603921 23604135 -62091619 + MIR SINE MIR 3 247 -15 1697 314 45 21 chr15 23604470 23605476 -62090278 - L1MEc LINE L1 -5349 1047 18 263 216 0 0 chr15 23605603 23605654 -62090100 - LTR33 LTR ERVL -392 129 79 372 247 0 0 chr15 23605741 23605826 -62089928 - LTR33 LTR ERVL -436 85 1 1083 308 24 12 chr15 23606076 23606495 -62089259 - LTR16A LTR ERVL -5 445 22 363 299 48 7 chr15 23607183 23607330 -62088424 - MLT1J2 LTR MaLR -14 436 284 447 130 13 0 chr15 23607419 23607496 -62088258 - MLT1J2 LTR MaLR -305 145 68 363 226 239 13 chr15 23607576 23607731 -62088023 - L1MEd LINE L1 -5928 191 2 345 217 0 0 chr15 23607805 23607865 -62087889 + L2 LINE L2 3205 3264 -8 299 274 94 0 chr15 23608769 23608875 -62086879 + MIR3 SINE MIR 87 202 -6 226 274 36 12 chr15 23610170 23610254 -62085500 - MLT1J LTR MaLR -197 314 229 410 229 35 2 chr15 23613277 23613411 -62082343 - L1MD3 LINE L1 0 7995 6221 352 291 52 39 chr15 23613515 23613745 -62082009 - Charlie7 DNA MER1_type -1876 736 500 6828 70 6 1 chr15 23613745 23614674 -62081080 + L1PA7 LINE L1 5222 6154 0 352 291 52 39 chr15 23614674 23614749 -62081005 - Charlie7 DNA MER1_type -2112 500 427 424 300 58 53 chr15 23615114 23615304 -62080450 - MIR SINE MIR -60 202 12 357 209 23 147 chr15 23615852 23616029 -62079725 - MER69 DNA AcHobo -9 2517 14 21 36 0 0 chr15 23616355 23616383 -62079371 + AT_rich Low_complexity Low_complexity 1 28 0 462 245 0 0 chr15 23617352 23617450 -62078304 - Tigger7 DNA MER2_type 0 2487 2390 1218 198 0 17 chr15 23617459 23617696 -62078058 - Tigger7 DNA MER2_type -469 264 32 22 0 0 0 chr15 23618359 23618381 -62077373 + AT_rich Low_complexity Low_complexity 1 22 0 1142 249 35 51 chr15 23618675 23619166 -62076588 - Charlie7 DNA MER1_type -1282 1330 848 321 182 23 23 chr15 23619176 23619308 -62076446 + (TA)n Simple_repeat Simple_repeat 2 133 0 593 233 6 43 chr15 23619328 23619491 -62076263 - L1MD2 LINE L1 -24 6335 6179 370 275 63 22 chr15 23619502 23619721 -62076033 - Charlie7 DNA MER1_type -1793 819 592 3030 138 67 52 chr15 23619721 23620337 -62075417 + MER51A LTR ERV1 1 625 -9 438 239 115 34 chr15 23620432 23620666 -62075088 - Charlie7 DNA MER1_type -2090 522 270 1999 103 0 8 chr15 23621094 23621356 -62074398 + AluSc SINE Alu 35 294 -15 276 77 0 0 chr15 23622591 23622630 -62073124 + (TATTG)n Simple_repeat Simple_repeat 1 39 0 411 278 19 43 chr15 23622676 23622838 -62072916 - MER63A DNA MER1_type -9 201 44 775 317 125 8 chr15 23623114 23623505 -62072249 - LTR33 LTR ERVL -84 437 1 760 271 19 5 chr15 23623879 23624086 -62071668 - MER63A DNA MER1_type 0 210 1 1786 168 12 40 chr15 23624326 23624653 -62071101 + MER34B LTR ERV1 14 331 -234 28 48 0 0 chr15 23625374 23625416 -62070338 + AT_rich Low_complexity Low_complexity 1 42 0 672 311 55 13 chr15 23625532 23625770 -62069984 + MIR SINE MIR 15 262 0 264 238 124 63 chr15 23625981 23626296 -62069458 + L1ME4a LINE L1 5788 6121 0 474 303 70 12 chr15 23626537 23626781 -62068973 - MIR SINE MIR -2 260 3 405 205 13 13 chr15 23627916 23627994 -62067760 - L3b LINE CR1 -262 1321 1244 242 320 0 31 chr15 23629405 23629533 -62066221 + (TATATG)n Simple_repeat Simple_repeat 3 126 0 724 193 0 0 chr15 23629533 23629652 -62066102 + MER82 DNA MER2_type 1 119 -534 6917 60 8 0 chr15 23629654 23631334 -62064420 + L1PA7 LINE L1 4465 6154 0 3029 235 36 30 chr15 23631836 23632727 -62063027 - L1ME1 LINE L1 -4 6162 5267 261 0 0 0 chr15 23632837 23632866 -62062888 + (TA)n Simple_repeat Simple_repeat 1 29 0 1023 201 58 33 chr15 23632866 23633140 -62062614 - L1ME1 LINE L1 -894 5252 4972 715 166 424 37 chr15 23633142 23633462 -62062292 + MER31A LTR ERV1 3 198 -345 845 163 107 46 chr15 23633462 23633658 -62062096 - MER6B DNA MER2_type -1 209 2 715 166 424 37 chr15 23633658 23633717 -62062037 + MER31A LTR ERV1 198 543 0 1643 253 75 5 chr15 23633717 23634313 -62061441 - L1ME1 LINE L1 -1171 4975 4338 982 112 42 75 chr15 23634329 23634543 -62061211 - L1MA9 LINE L1 0 6312 6106 2139 166 46 69 chr15 23634552 23635071 -62060683 - L1MA9 LINE L1 -30 6282 5776 288 111 0 0 chr15 23635099 23635144 -62060610 + (CA)n Simple_repeat Simple_repeat 2 46 0 246 147 0 0 chr15 23635146 23635180 -62060574 - Tigger1 DNA MER2_type 0 2418 2385 4088 211 86 24 chr15 23635195 23636309 -62059445 - L1 LINE L1 -1743 4403 3221 812 193 12 6 chr15 23636383 23636554 -62059200 - L1MD3 LINE L1 -2 7993 7822 357 209 0 0 chr15 23636566 23636633 -62059121 - Charlie2 DNA MER1_type -878 1984 1918 783 234 26 9 chr15 23636642 23636869 -62058885 - L1ME1 LINE L1 -1832 4314 4084 2419 209 32 18 chr15 23636989 23637678 -62058076 - L1M4 LINE L1 -388 5796 5093 957 209 114 74 chr15 23637678 23638056 -62057698 + MSTD LTR MaLR 3 395 -1 2419 209 32 18 chr15 23638056 23638234 -62057520 - L1M4 LINE L1 -1091 5093 4919 1393 229 74 26 chr15 23638234 23638855 -62056899 - L1M4 LINE L1 -2358 3788 3138 281 385 8 8 chr15 23638903 23639025 -62056729 - L2 LINE L2 -1 3271 3150 357 268 71 8 chr15 23639560 23639687 -62056067 - MIR SINE MIR 0 262 128 224 231 19 0 chr15 23639697 23639749 -62056005 + (TG)n Simple_repeat Simple_repeat 1 53 0 22 56 0 0 chr15 23640525 23640561 -62055193 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr15 23641582 23641611 -62054143 + AT_rich Low_complexity Low_complexity 1 29 0 457 345 14 5 chr15 23644543 23644752 -62051002 + LTR37B LTR ERV1 6 216 -252 408 253 77 84 chr15 23644780 23645053 -62050701 + LTR37B LTR ERV1 196 466 -2 3009 192 61 0 chr15 23645724 23645860 -62049894 - L1PBb LINE L1 -5115 1089 963 2000 107 43 7 chr15 23645860 23646159 -62049595 - AluSg SINE Alu 0 310 1 3009 192 61 0 chr15 23646159 23646642 -62049112 - L1PBb LINE L1 -5241 963 432 2821 111 35 36 chr15 23646638 23647160 -62048594 + L1PB2 LINE L1 1760 2280 -4583 * 13098 180 28 23 chr15 23647156 23648259 -62047495 + L1PB2 LINE L1 2842 3937 -2930 2216 109 0 26 chr15 23648259 23648570 -62047184 + AluSg SINE Alu 3 305 -5 13098 180 28 23 chr15 23648570 23650080 -62045674 + L1PB2 LINE L1 3937 5437 -1430 2042 111 0 0 chr15 23650080 23650382 -62045372 + AluY SINE Alu 1 302 0 13098 180 28 23 chr15 23650382 23650833 -62044921 + L1PB2 LINE L1 5437 5884 -983 405 0 0 0 chr15 23650833 23650878 -62044876 + (TAA)n Simple_repeat Simple_repeat 2 46 0 13098 180 28 23 chr15 23650878 23651809 -62043945 + L1PB2 LINE L1 5884 6861 -6 265 275 99 75 chr15 23652988 23653229 -62042525 - MIR SINE MIR -6 256 22 228 255 87 106 chr15 23653808 23653969 -62041785 - MLT1J LTR MaLR -35 476 319 456 155 0 0 chr15 23654540 23654611 -62041143 - AluJ/FLAM SINE Alu -241 71 1 2469 29 7 23 chr15 23655377 23655685 -62040069 + AluY SINE Alu 1 303 -8 281 323 47 24 chr15 23656045 23656172 -62039582 + MIR SINE MIR 117 246 -16 7130 193 30 5 chr15 23656178 23658365 -62037389 + L1PA13 LINE L1 3922 6152 -11 2934 118 59 18 chr15 23659128 23659621 -62036133 - MER75 DNA T2_type 0 514 2 212 356 25 17 chr15 23660591 23660709 -62035045 + MIR SINE MIR 22 140 -68 498 239 34 0 chr15 23660827 23660944 -62034810 + MER45A DNA AcHobo 58 178 0 534 58 0 70 chr15 23661071 23661157 -62034597 - MADE1 DNA Mariner 0 80 1 221 219 97 70 chr15 23662569 23662683 -62033071 + L2 LINE L2 3197 3313 0 2073 120 3 3 chr15 23664371 23664663 -62031091 - AluSq SINE Alu -13 300 9 993 269 41 44 chr15 23664925 23665289 -62030465 + MLT1H1 LTR MaLR 1 363 -192 2451 73 0 0 chr15 23665613 23665915 -62029839 - AluY SINE Alu -9 302 1 2042 134 0 0 chr15 23667132 23667431 -62028323 + AluSx SINE Alu 13 311 -1 334 299 109 6 chr15 23667432 23667606 -62028148 + L1MCa LINE L1 1287 1478 -4948 265 263 50 0 chr15 23667630 23667710 -62028044 - L1MA7 LINE L1 -6 6285 6202 * 11003 185 54 44 chr15 23667708 23667942 -62027812 - L1MA6 LINE L1 -152 6148 5918 2046 142 41 19 chr15 23667942 23668309 -62027445 + THE1C LTR MaLR 1 375 0 11003 185 54 44 chr15 23668309 23671563 -62024191 - L1MA6 LINE L1 -382 5918 2697 186 71 0 0 chr15 23671563 23671591 -62024163 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1670 162 4 0 chr15 23671598 23671863 -62023891 - AluSx SINE Alu -46 266 1 11003 185 54 44 chr15 23671863 23672047 -62023707 - L1MA6 LINE L1 -3608 2692 2429 541 316 41 39 chr15 23672046 23672458 -62023296 + L1MCa LINE L1 1651 2063 -4544 * 220 183 21 0 chr15 23672518 23672611 -62023143 + (TA)n Simple_repeat Simple_repeat 2 96 0 600 278 56 44 chr15 23672624 23673103 -62022651 + L1MCa LINE L1 2098 2582 -4025 372 256 23 23 chr15 23673112 23673241 -62022513 + L1ME2 LINE L1 39 167 -6229 621 299 10 0 chr15 23673273 23673477 -62022277 + L1ME2 LINE L1 4184 4389 -1826 9212 223 38 19 chr15 23673481 23677401 -62018353 + L1M1 LINE L1 7 4749 -2816 435 255 174 11 chr15 23677368 23677844 -62017910 + L1ME2 LINE L1 6325 6886 -695 * 386 38 0 19 chr15 23677848 23677901 -62017853 + (TA)n Simple_repeat Simple_repeat 1 52 0 237 125 25 0 chr15 23677921 23677961 -62017793 - L1ME LINE L1 -387 5779 5739 599 270 133 42 chr15 23677966 23678229 -62017525 + L1ME2 LINE L1 5939 6225 -8 683 324 98 19 chr15 23678392 23679171 -62016583 + L1ME3A LINE L1 4556 5395 -751 723 252 20 28 chr15 23679189 23679439 -62016315 + L1ME3A LINE L1 5456 5703 -467 289 270 11 0 chr15 23679513 23679602 -62016152 + L1ME3A LINE L1 6076 6165 -5 1520 175 7 21 chr15 23680030 23680316 -62015438 - MLT1B LTR MaLR -108 282 1 305 311 61 15 chr15 23680827 23680959 -62014795 + MLT1L LTR MaLR 476 613 -2 320 310 36 84 chr15 23682267 23682576 -62013178 - LTR16A LTR ERVL -126 324 18 2032 334 60 40 chr15 23682728 23683296 -62012458 - MERVL LTR ERVL -444 5320 4765 2133 107 0 10 chr15 23683296 23683596 -62012158 + AluY SINE Alu 1 297 -14 2032 334 60 40 chr15 23683596 23684849 -62010905 - MERVL LTR ERVL -999 4765 3437 417 369 19 0 chr15 23684932 23685137 -62010617 - MERVL LTR ERVL -2205 3280 3100 2495 223 114 27 chr15 23686117 23686962 -62008792 - L1ME1 LINE L1 -8 6158 5230 3938 207 14 3 chr15 23686967 23687848 -62007906 + L1ME1 LINE L1 4355 5244 -902 200 254 18 0 chr15 23687848 23687903 -62007851 + (TA)n Simple_repeat Simple_repeat 2 57 0 5494 97 1 4 chr15 23687905 23688681 -62007073 + L1PB1 LINE L1 5378 6151 0 3632 259 75 50 chr15 23688690 23690570 -62005184 - L1ME1 LINE L1 -902 5244 3318 4938 184 34 41 chr15 23690774 23692152 -62003602 - L1MC1 LINE L1 -5 7123 5759 43454 41 5 3 chr15 23692185 23698328 -61997426 - L1PA4 LINE L1 0 6155 2 3648 230 51 30 chr15 23698338 23699531 -61996223 - L1MC1 LINE L1 -1199 5742 4525 2111 284 63 20 chr15 23699545 23700724 -61995030 - L1M3de LINE L1 -5461 1192 23 * 6098 185 57 46 chr15 23700721 23701297 -61994457 - L1MC1 LINE L1 -4941 2000 1431 405 0 0 0 chr15 23701297 23701342 -61994412 + (TG)n Simple_repeat Simple_repeat 2 46 0 6098 185 57 46 chr15 23701342 23702234 -61993520 - L1MC1 LINE L1 -5510 1431 517 1223 211 75 14 chr15 23702216 23702576 -61993178 - L1MCc LINE L1 -3104 3837 3456 * 1595 254 99 52 chr15 23702577 23704757 -61990997 - L1MCc LINE L1 -3584 3357 921 240 245 47 47 chr15 23705071 23705177 -61990577 - L1MC1 LINE L1 -6104 319 214 2080 90 18 0 chr15 23706533 23706836 -61988918 - AluSp SINE Alu 0 308 1 228 278 62 31 chr15 23707350 23707447 -61988307 + MIR SINE MIR 161 260 -2 2538 54 0 0 chr15 23707749 23708044 -61987710 - AluY SINE Alu -8 303 9 257 175 123 0 chr15 23708054 23708111 -61987643 + MER69 DNA AcHobo 2463 2526 0 213 291 325 0 chr15 23708129 23708246 -61987508 - MER5A DNA MER1_type -8 181 27 344 352 0 0 chr15 23708743 23708851 -61986903 - MIR3 SINE MIR -32 176 69 195 333 71 71 chr15 23710010 23710178 -61985576 + MIR3 SINE MIR 14 181 -27 1833 215 39 60 chr15 23710195 23710768 -61984986 - L1MC4 LINE L1 0 8042 7481 2429 130 8 16 chr15 23710768 23711146 -61984608 - THE1C LTR MaLR 0 375 1 1833 215 39 60 chr15 23711146 23711168 -61984586 - L1MC4 LINE L1 -561 7481 7460 327 287 74 9 chr15 23711441 23711549 -61984205 + LTR16B LTR ERVL 350 464 0 556 219 0 0 chr15 23713684 23713798 -61981956 + MER96B DNA MER1_type? 294 407 -10 258 250 0 0 chr15 23714036 23714092 -61981662 + (CA)n Simple_repeat Simple_repeat 2 57 0 20636 159 39 20 chr15 23714545 23717315 -61978439 - L1MA2 LINE L1 0 7723 5008 1866 156 117 25 chr15 23717315 23717707 -61978047 - MSTA LTR MaLR 0 428 1 20636 159 39 20 chr15 23717707 23718401 -61977353 - L1MA2 LINE L1 -2715 5008 4329 1327 48 0 0 chr15 23718401 23718562 -61977192 + L1PA4 LINE L1 5989 6154 -1 20636 159 39 20 chr15 23718562 23722693 -61973061 - L1MA2 LINE L1 -3394 4329 1 1395 186 64 7 chr15 23724179 23724475 -61971279 - L1MA5 LINE L1 -24 6276 5964 378 289 37 84 chr15 23726195 23726385 -61969369 + MER102b DNA MER1_type 146 326 -15 2282 90 0 3 chr15 23727898 23728188 -61967566 + AluSg SINE Alu 1 289 -21 364 140 9 47 chr15 23730054 23730161 -61965593 + GA-rich Low_complexity Low_complexity 2 104 0 807 133 0 0 chr15 23731290 23731403 -61964351 + AluSq/x SINE Alu 1 113 -199 425 105 0 0 chr15 23731403 23731489 -61964265 + Alu SINE Alu 227 312 0 180 235 71 102 chr15 23731720 23731818 -61963936 + L2 LINE L2 407 501 -2813 323 344 48 8 chr15 23731921 23732046 -61963708 + MIR SINE MIR 35 164 -98 790 253 0 0 chr15 23732864 23733026 -61962728 - MER58A DNA MER1_type -24 200 39 3431 211 31 37 chr15 23733028 23733859 -61961895 + L1MD2 LINE L1 5523 6348 -11 338 294 49 0 chr15 23735152 23735254 -61960500 - MLT1K LTR MaLR -113 475 369 1682 131 36 0 chr15 23735467 23735719 -61960035 - AluSx SINE Alu -13 299 39 348 345 73 12 chr15 23735722 23735887 -61959867 - MIR SINE MIR -70 192 18 1700 273 85 22 chr15 23736116 23736949 -61958805 + L1ME1 LINE L1 5254 6161 -5 725 274 0 52 chr15 23737040 23737252 -61958502 - MER63A DNA MER1_type -9 201 1 347 246 70 81 chr15 23737447 23737647 -61958107 + MIR3 SINE MIR 13 206 -43 388 325 82 53 chr15 23738436 23738777 -61956977 + L3 LINE CR1 809 1159 -418 576 284 18 0 chr15 23739972 23740141 -61955613 + HAL1 LINE L1 1590 1761 -746 314 272 24 48 chr15 23740264 23740389 -61955365 + MER119 DNA MER1_type 462 583 0 706 258 59 56 chr15 23740401 23740793 -61954961 + HAL1 LINE L1 1766 2158 -349 1491 66 0 10 chr15 23740812 23741008 -61954746 + L1P3 LINE L1 5576 5769 -385 1311 148 30 4 chr15 23741003 23741233 -61954521 - L1MA4A LINE L1 -101 6202 5967 * 1421 173 20 0 chr15 23741233 23741488 -61954266 - LOR1a LTR ERV1 0 497 238 717 181 20 20 chr15 23741474 23741623 -61954131 - LOR1b LTR ERV1 -276 185 37 * 1011 160 48 5 chr15 23741639 23741826 -61953928 - L1MA4A LINE L1 -333 5970 5776 281 169 12 85 chr15 23741857 23741952 -61953802 - L1P5 LINE L1 -361 5795 5709 594 48 48 0 chr15 23741952 23742035 -61953719 + L1PA7 LINE L1 6066 6152 -2 195 42 0 0 chr15 23742085 23742109 -61953645 + (TG)n Simple_repeat Simple_repeat 2 25 0 252 281 134 18 chr15 23742111 23742275 -61953479 + HAL1 LINE L1 2239 2421 -86 31 44 0 0 chr15 23742353 23742398 -61953356 + AT_rich Low_complexity Low_complexity 1 45 0 8723 202 67 53 chr15 23742435 23744854 -61950900 - L1M2 LINE L1 -4261 2948 7 1005 261 146 23 chr15 23744886 23744955 -61950799 - L1MDb LINE L1 -4721 1685 1626 2107 177 53 7 chr15 23744955 23745368 -61950386 - MSTB1 LTR MaLR 0 432 1 1005 261 146 23 chr15 23745368 23746157 -61949597 - L1MDb LINE L1 -4780 1626 776 303 49 0 0 chr15 23746473 23746514 -61949240 + (CA)n Simple_repeat Simple_repeat 2 42 0 282 184 147 18 chr15 23748270 23748379 -61947375 - MIR SINE MIR -95 167 45 415 300 198 26 chr15 23748384 23748687 -61947067 + L2 LINE L2 1803 2157 -1157 366 319 87 22 chr15 23748841 23749026 -61946728 - L2 LINE L2 0 3313 3117 5417 116 51 6 chr15 23749296 23751003 -61944751 - L1PA14 LINE L1 -3 6158 4397 1367 200 0 0 chr15 23751165 23751395 -61944359 + AluJb SINE Alu 1 230 -82 248 323 118 63 chr15 23752834 23753088 -61942666 - L2 LINE L2 0 3272 3005 377 212 44 18 chr15 23753375 23753488 -61942266 - MIR3 SINE MIR -9 199 84 4850 162 16 15 chr15 23754065 23754923 -61940831 + MER6 DNA MER2_type 4 862 -3 342 0 0 0 chr15 23754925 23754963 -61940791 + (TG)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr15 23755725 23755747 -61940007 + AT_rich Low_complexity Low_complexity 1 22 0 1768 70 4 45 chr15 23755862 23756105 -61939649 - AluY SINE Alu -14 297 65 1676 177 159 5 chr15 23756127 23756499 -61939255 + MSTB1 LTR MaLR 4 432 0 324 0 0 0 chr15 23757318 23757354 -61938400 + (TG)n Simple_repeat Simple_repeat 2 37 0 345 82 0 0 chr15 23757392 23757441 -61938313 + (CACTA)n Simple_repeat Simple_repeat 2 50 0 2302 156 60 1 chr15 23757528 23758013 -61937741 - MER44D DNA MER2_type 0 605 9 1263 312 113 9 chr15 23758997 23759555 -61936199 + MLT2F LTR ERVL 48 663 0 183 276 92 13 chr15 23759734 23759810 -61935944 + MER5A DNA MER1_type 31 112 -77 213 312 26 26 chr15 23760780 23760857 -61934897 - L2 LINE L2 0 3313 3237 982 304 78 35 chr15 23761222 23761709 -61934045 + LTR33 LTR ERVL 12 519 -2 470 260 97 51 chr15 23761713 23761909 -61933845 - MIR SINE MIR -10 252 48 235 316 35 105 chr15 23764183 23764411 -61931343 + L1MEd LINE L1 447 658 -5461 2887 3 0 0 chr15 23764578 23764889 -61930865 + AluYa5 SINE Alu 1 311 0 366 23 0 0 chr15 23765107 23765150 -61930604 + (A)n Simple_repeat Simple_repeat 1 43 0 289 267 48 79 chr15 23765203 23765368 -61930386 + L1MDa LINE L1 303 462 -5910 2476 261 107 56 chr15 23765691 23766459 -61929295 - L1MCc LINE L1 -2159 4782 4054 306 106 0 0 chr15 23766459 23766506 -61929248 + (TG)n Simple_repeat Simple_repeat 2 48 0 2476 261 107 56 chr15 23766506 23766713 -61929041 - L1MCc LINE L1 -2887 4054 3859 2126 103 3 7 chr15 23766713 23767005 -61928749 - AluSc SINE Alu -18 291 1 2476 261 107 56 chr15 23767005 23768850 -61926904 - L1MCc LINE L1 -3082 3859 1852 7712 25 1 0 chr15 23768861 23770525 -61925229 - L1PA3 LINE L1 0 6155 4491 9073 63 0 6 chr15 23770525 23771681 -61924073 + L1P LINE L1 13 1161 -4985 1117 297 110 39 chr15 23771687 23772634 -61923120 - L1MCc LINE L1 -4888 1535 654 1270 305 78 4 chr15 23772733 23773192 -61922562 - L1MCc LINE L1 -5913 510 18 1459 307 19 15 chr15 23773202 23773733 -61922021 - HERV16 LTR ERVL -3725 1271 739 989 313 36 8 chr15 23773744 23774102 -61921652 - HERV16 LTR ERVL -4628 368 1 540 296 105 53 chr15 23774130 23774434 -61921320 - LTR16A LTR ERVL -50 400 81 265 248 77 2 chr15 23774493 23774609 -61921145 + L1MDa LINE L1 1400 1601 -4781 2110 133 3 0 chr15 23774871 23775173 -61920581 + AluSx SINE Alu 1 303 -9 465 303 12 19 chr15 23775196 23775358 -61920396 + HERV16 LTR ERVL 2019 2179 -2817 311 281 74 16 chr15 23775364 23775485 -61920269 + HERV16 LTR ERVL 2421 2548 -3106 1144 358 18 21 chr15 23775631 23776169 -61919585 + HERV16 LTR ERVL 2659 3232 -1924 394 310 10 0 chr15 23776264 23776364 -61919390 - HERV16 LTR ERVL -4858 138 38 375 259 122 7 chr15 23776447 23776594 -61919160 - LTR16A LTR ERVL -54 396 233 703 211 80 107 chr15 23779734 23780098 -61915656 - L1M4 LINE L1 -2064 4082 3729 396 268 125 68 chr15 23780235 23780604 -61915150 - HAL1 LINE L1 -714 1793 1404 5035 141 18 27 chr15 23780605 23782309 -61913445 + L1PA15 LINE L1 4236 5953 -212 2571 109 25 3 chr15 23782309 23782676 -61913078 + THE1C LTR MaLR 1 375 0 9158 127 36 46 chr15 23782676 23784271 -61911483 + THE1C-int LTR MaLR 1 1580 0 2542 120 11 3 chr15 23784273 23784641 -61911113 + THE1C LTR MaLR 3 373 -2 5035 141 18 27 chr15 23784641 23784852 -61910902 + L1PA15 LINE L1 5953 6146 -19 417 394 74 17 chr15 23785103 23785400 -61910354 - L2 LINE L2 -17 3255 2942 263 309 71 0 chr15 23785430 23785514 -61910240 - L2 LINE L2 -4 3309 3220 21 0 0 0 chr15 23785736 23785757 -61909997 + AT_rich Low_complexity Low_complexity 1 21 0 692 314 73 20 chr15 23786204 23786614 -61909140 - L1ME3A LINE L1 -302 5819 5406 337 253 101 31 chr15 23787294 23787551 -61908203 - L1ME3A LINE L1 -1542 4604 4330 1480 55 6 0 chr15 23787561 23787776 -61907978 - AluY SINE Alu 0 313 98 269 411 39 9 chr15 23787844 23788075 -61907679 - L2 LINE L2 -635 2679 2442 772 228 76 0 chr15 23789161 23789345 -61906409 - MER3 DNA MER1_type -9 200 3 23 0 0 0 chr15 23794335 23794358 -61901396 + AT_rich Low_complexity Low_complexity 1 23 0 514 250 23 8 chr15 23794469 23794601 -61901153 - MIR SINE MIR -42 220 87 270 302 67 13 chr15 23795188 23795337 -61900417 - L1ME LINE L1 -365 5756 5600 317 167 0 0 chr15 23795468 23795516 -61900238 + Tigger5 DNA MER2_type 1 48 -2275 280 129 257 0 chr15 23795529 23795599 -61900155 + Tigger5 DNA MER2_type 2234 2321 -2 21 0 0 0 chr15 23796398 23796419 -61899335 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr15 23796530 23796563 -61899191 + AT_rich Low_complexity Low_complexity 1 33 0 198 0 0 0 chr15 23796895 23796917 -61898837 + (A)n Simple_repeat Simple_repeat 1 22 0 434 319 40 60 chr15 23797476 23797724 -61898030 - MIR SINE MIR -13 249 7 342 250 145 40 chr15 23797979 23798103 -61897651 + MIR SINE MIR 45 181 -81 241 291 204 19 chr15 23798272 23798478 -61897276 + L2 LINE L2 1793 2036 -1278 313 408 18 18 chr15 23798737 23799009 -61896745 + L2 LINE L2 2619 2890 -424 385 319 67 26 chr15 23799121 23799391 -61896363 + L2 LINE L2 3021 3301 -12 183 80 0 0 chr15 23799392 23799417 -61896337 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 183 342 66 40 chr15 23799456 23799608 -61896146 + L2 LINE L2 2060 2215 -1099 2264 107 0 0 chr15 23799905 23800204 -61895550 - AluSc SINE Alu -10 299 1 333 82 0 0 chr15 23803708 23803757 -61891997 + (TG)n Simple_repeat Simple_repeat 2 50 0 1047 270 42 44 chr15 23804030 23804437 -61891317 + LTR16A1 LTR ERVL 52 457 0 1142 272 40 45 chr15 23804466 23804937 -61890817 + Tigger8 DNA MER2_type 72 540 -126 758 298 48 17 chr15 23805256 23805551 -61890203 + LTR16B LTR ERVL 141 444 -20 297 314 66 16 chr15 23805820 23805941 -61889813 + MIR SINE MIR 81 207 -55 610 291 66 8 chr15 23806692 23806933 -61888821 + LTR16A LTR ERVL 191 445 -5 34 24 0 0 chr15 23807195 23807236 -61888518 + AT_rich Low_complexity Low_complexity 1 41 0 661 304 84 13 chr15 23808407 23808644 -61887110 - MIR SINE MIR -7 255 2 255 339 77 8 chr15 23808774 23808904 -61886850 + L2 LINE L2 3174 3312 -1 230 164 18 0 chr15 23809358 23809413 -61886341 + GA-rich Low_complexity Low_complexity 3 58 0 236 287 66 48 chr15 23809995 23810011 -61885743 + L1MDa LINE L1 1624 1638 -4902 180 0 0 0 chr15 23810011 23810031 -61885723 + (CAA)n Simple_repeat Simple_repeat 2 21 0 236 287 66 48 chr15 23810031 23810286 -61885468 + L1MDa LINE L1 1638 1900 -4640 1384 229 87 63 chr15 23810523 23811016 -61884738 - MLT1D LTR MaLR 0 505 1 1790 216 107 22 chr15 23811166 23811671 -61884083 + L1ME2 LINE L1 5560 6107 -57 26 64 0 0 chr15 23812601 23812648 -61883106 + AT_rich Low_complexity Low_complexity 1 47 0 396 0 0 0 chr15 23813986 23814030 -61881724 + (TG)n Simple_repeat Simple_repeat 2 45 0 249 314 58 35 chr15 23814118 23814204 -61881550 - L2 LINE L2 -5 3267 3180 200 309 26 59 chr15 23815883 23816035 -61879719 - L2 LINE L2 -8 3305 3159 549 175 39 0 chr15 23816874 23816977 -61878777 + U6 snRNA snRNA 1 107 0 13780 200 45 5 chr15 23816977 23821187 -61874567 + L1MA5 LINE L1 2634 7001 -1 21 0 0 0 chr15 23821776 23821797 -61873957 + AT_rich Low_complexity Low_complexity 1 21 0 304 110 73 7 chr15 23822087 23822223 -61873531 + (TA)n Simple_repeat Simple_repeat 2 146 0 580 294 87 39 chr15 23824298 23824367 -61871387 - MIR SINE MIR -10 252 188 2169 120 0 0 chr15 23824367 23824668 -61871086 - AluSg SINE Alu -9 301 1 580 294 87 39 chr15 23824668 23824829 -61870925 - MIR SINE MIR -74 188 11 215 175 12 50 chr15 23824906 23824986 -61870768 + CT-rich Low_complexity Low_complexity 1 77 0 229 200 0 43 chr15 23825010 23825080 -61870674 + (TA)n Simple_repeat Simple_repeat 1 67 0 255 227 9 18 chr15 23825624 23825734 -61870020 + CT-rich Low_complexity Low_complexity 4 112 0 21 36 0 0 chr15 23825776 23825804 -61869950 + AT_rich Low_complexity Low_complexity 1 28 0 2156 50 39 4 chr15 23827050 23827331 -61868423 - AluY SINE Alu -20 291 1 240 167 146 0 chr15 23827744 23827792 -61867962 - MLT1F1 LTR MaLR -200 367 313 334 226 30 24 chr15 23827889 23828048 -61867706 - MLT1F1 LTR MaLR -408 159 1 806 252 66 44 chr15 23828343 23828800 -61866954 + LTR56 LTR ERV1 9 437 0 353 244 47 79 chr15 23828968 23829095 -61866659 + MIR SINE MIR 21 143 -65 342 0 0 0 chr15 23829836 23829874 -61865880 + (T)n Simple_repeat Simple_repeat 1 38 0 408 342 26 35 chr15 23830576 23830804 -61864950 + Charlie2 DNA MER1_type 1 226 -2636 1221 220 70 108 chr15 23830936 23831771 -61863983 + Charlie2 DNA MER1_type 1975 2777 -85 460 354 34 5 chr15 23832763 23832969 -61862785 - LTR16A LTR ERVL -120 330 119 378 272 26 77 chr15 23833125 23833320 -61862434 - L2 LINE L2 -22 3291 3107 194 128 26 0 chr15 23834464 23834503 -61861251 + GA-rich Low_complexity Low_complexity 2 41 0 1875 160 3 6 chr15 23834971 23835283 -61860471 - AluY SINE Alu 0 311 1 3315 141 21 9 chr15 23835421 23835981 -61859773 - L1PB4 LINE L1 -3 6153 5587 780 286 107 72 chr15 23836326 23836365 -61859389 + L1ME3A LINE L1 3276 3312 -2834 2541 90 95 5 chr15 23836365 23836776 -61858978 + LTR7 LTR ERV1 1 448 -2 780 286 107 72 chr15 23836776 23837134 -61858620 + L1ME3A LINE L1 3312 3656 -2490 3060 136 35 35 chr15 23837134 23837729 -61858025 + LTR49 LTR ERV1 1 595 0 780 286 107 72 chr15 23837729 23838224 -61857530 + L1ME3A LINE L1 3656 4218 -1928 3923 95 0 28 chr15 23838224 23838790 -61856964 + MER41A LTR ERV1 5 554 0 780 286 107 72 chr15 23838790 23838998 -61856756 + L1ME3A LINE L1 4218 4417 -1729 643 259 175 14 chr15 23838993 23839279 -61856475 + L1ME3A LINE L1 5553 5884 -286 * 3735 150 65 12 chr15 23839281 23839336 -61856418 + MER50 LTR ERV1 1 52 -682 234 105 0 0 chr15 23839336 23839374 -61856380 + (CA)n Simple_repeat Simple_repeat 2 39 0 3735 150 65 12 chr15 23839374 23839993 -61855761 + MER50 LTR ERV1 52 711 -23 488 231 70 13 chr15 23840052 23840208 -61855546 + L1ME3A LINE L1 6001 6165 -5 380 253 100 20 chr15 23840328 23840478 -61855276 + L1ME3A LINE L1 4602 4763 -1383 1247 199 4 0 chr15 23840496 23840722 -61855032 - AluJb SINE Alu -16 296 70 183 100 0 0 chr15 23840750 23840780 -61854974 + (AATAG)n Simple_repeat Simple_repeat 1 30 0 1565 277 74 29 chr15 23840871 23841808 -61853946 + L1ME3A LINE L1 4973 5948 -222 237 65 0 0 chr15 23843293 23843324 -61852430 + (T)n Simple_repeat Simple_repeat 1 31 0 649 215 98 29 chr15 23844100 23844346 -61851408 + L1MB7 LINE L1 4301 4563 -1583 907 242 85 30 chr15 23844346 23844782 -61850972 - MLT1D LTR MaLR 0 467 12 3211 207 65 15 chr15 23844793 23846169 -61849585 + L1MB7 LINE L1 4563 6000 -184 349 221 189 0 chr15 23846170 23846265 -61849489 - MLT1D LTR MaLR -76 429 317 611 153 5 54 chr15 23846268 23846405 -61849349 + L1MB7 LINE L1 6014 6146 -32 1069 257 89 24 chr15 23846739 23846903 -61848851 + MLT1A2 LTR MaLR 4 156 -218 432 0 0 0 chr15 23846903 23846951 -61848803 + (TG)n Simple_repeat Simple_repeat 2 49 0 1069 257 89 24 chr15 23846951 23847124 -61848630 + MLT1A2 LTR MaLR 156 363 -11 461 298 37 52 chr15 23847900 23848108 -61847646 + MIR SINE MIR 40 243 -19 198 270 27 32 chr15 23848801 23848935 -61846819 - MER5A DNA MER1_type -6 183 1 22 35 0 0 chr15 23850019 23850048 -61845706 + AT_rich Low_complexity Low_complexity 1 29 0 404 322 7 0 chr15 23850160 23850309 -61845445 + CT-rich Low_complexity Low_complexity 4 153 0 1482 214 54 5 chr15 23851045 23851414 -61844340 - MER110A LTR ERV1 -2 466 80 236 303 26 0 chr15 23853694 23853770 -61841984 - MIR3 SINE MIR -6 202 125 261 256 23 124 chr15 23854186 23854315 -61841439 + MER5A DNA MER1_type 73 188 -1 574 249 56 60 chr15 23854899 23855184 -61840570 - L1ME2 LINE L1 -9 6155 5872 32 0 0 0 chr15 23855305 23855337 -61840417 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr15 23855651 23855672 -61840082 + AT_rich Low_complexity Low_complexity 1 21 0 1906 193 39 28 chr15 23855928 23856362 -61839392 - L1MD1 LINE L1 0 6242 5812 21 36 0 0 chr15 23856510 23856538 -61839216 + AT_rich Low_complexity Low_complexity 1 28 0 815 315 68 73 chr15 23857813 23858375 -61837379 + L1M3b LINE L1 697 1255 -5026 2077 159 69 15 chr15 23859588 23859996 -61835758 + MSTB1 LTR MaLR 3 432 0 344 232 32 21 chr15 23860057 23860152 -61835602 - MLT1L LTR MaLR -12 603 508 2056 103 24 14 chr15 23860602 23860893 -61834861 + AluY SINE Alu 1 294 -17 2160 165 44 0 chr15 23861572 23861984 -61833770 + L1MD1 LINE L1 5367 5796 -446 1217 180 54 7 chr15 23861985 23862278 -61833476 + MLT1A1 LTR MaLR 1 365 0 2009 184 27 18 chr15 23862278 23862718 -61833036 + L1MD1 LINE L1 5793 6236 -6 21 0 0 0 chr15 23863382 23863403 -61832351 + AT_rich Low_complexity Low_complexity 1 21 0 625 280 27 31 chr15 23863412 23863669 -61832085 - L1ME3A LINE L1 -11 6159 5904 198 374 50 31 chr15 23864121 23864343 -61831411 + L2 LINE L2 2836 3061 -211 227 311 33 74 chr15 23864964 23865086 -61830668 + MIR SINE MIR 118 234 -28 367 321 50 7 chr15 23865727 23865867 -61829887 - L2 LINE L2 0 3313 3168 441 187 45 24 chr15 23866155 23866294 -61829460 - MLT1E1 LTR MaLR 0 654 367 485 213 57 41 chr15 23866353 23866543 -61829211 - MLT1E1 LTR MaLR -396 258 11 368 337 10 0 chr15 23866648 23866749 -61829005 + MIR SINE MIR 13 114 -148 2323 80 10 0 chr15 23866889 23867190 -61828564 - AluY SINE Alu -7 304 1 25 0 0 0 chr15 23868190 23868215 -61827539 + AT_rich Low_complexity Low_complexity 1 25 0 290 296 102 51 chr15 23869002 23869198 -61826556 + MIR3 SINE MIR 2 207 -1 297 343 119 34 chr15 23869361 23869688 -61826066 + L2 LINE L2 2929 3283 -30 243 0 0 0 chr15 23869706 23869733 -61826021 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 1366 151 81 13 chr15 23870030 23870309 -61825445 - MLT1D LTR MaLR -1 504 221 280 158 24 134 chr15 23870321 23870403 -61825351 - MLT1D LTR MaLR -430 75 3 247 331 166 0 chr15 23870574 23870737 -61825017 - MIR SINE MIR -60 202 13 615 288 56 4 chr15 23871369 23871619 -61824135 - LTR37B LTR ERV1 0 468 206 452 138 277 46 chr15 23871683 23871813 -61823941 - MER20 DNA MER1_type -4 215 56 423 212 102 66 chr15 23871815 23871952 -61823802 + FLAM_A SINE Alu 1 142 0 949 168 37 94 chr15 23872386 23872630 -61823124 - L1PA16 LINE L1 -9 6157 5928 * 1278 129 41 153 chr15 23872627 23872968 -61822786 + L1P LINE L1 3644 3946 -2200 927 266 79 13 chr15 23873200 23873516 -61822238 - MER46C DNA MER2_type 0 338 2 386 291 141 10 chr15 23873533 23873739 -61822015 - MIR SINE MIR 0 262 30 563 224 43 6 chr15 23874498 23874659 -61821095 - L1M4 LINE L1 -3832 2314 2148 * 634 175 138 78 chr15 23874656 23874873 -61820881 - L1MB7 LINE L1 0 6682 6453 2228 221 68 10 chr15 23874876 23875966 -61819788 - L1MB7 LINE L1 -329 6353 5203 572 242 26 9 chr15 23875966 23876201 -61819553 - 7SK RNA RNA 0 193 1 1126 219 33 25 chr15 23876201 23876566 -61819188 - L1MB7 LINE L1 -1426 5218 4851 2003 276 76 18 chr15 23876579 23878451 -61817303 - L1MB7 LINE L1 -3650 2994 886 * 4067 226 29 48 chr15 23878445 23880020 -61815734 - L1MD1 LINE L1 -68 6672 5131 1131 265 66 23 chr15 23880061 23880623 -61815131 - L1MD1 LINE L1 -5057 1577 893 326 206 68 14 chr15 23880701 23880774 -61814980 - L1MD1 LINE L1 -5671 871 795 310 364 36 27 chr15 23881143 23881363 -61814391 - L1MD1 LINE L1 -6304 238 17 2035 233 43 9 chr15 23881458 23881991 -61813763 - L1MB7 LINE L1 -16 6168 5618 472 328 20 10 chr15 23881992 23882196 -61813558 - L1MEc LINE L1 -5789 607 402 1463 223 17 3 chr15 23882230 23882576 -61813178 + MER6 DNA MER2_type 505 855 -10 1227 203 43 16 chr15 23882587 23883019 -61812735 - L1 LINE L1 -3693 2657 2211 3547 272 46 31 chr15 23883447 23886033 -61809721 - L1 LINE L1 -4157 2194 4 282 167 185 0 chr15 23887498 23887552 -61808202 - HERVL68 LTR ERVL -190 5340 5277 405 268 73 65 chr15 23887808 23888054 -61807700 - HERVL68 LTR ERVL -329 2708 2461 689 296 57 31 chr15 23889245 23889596 -61806158 - LTR16B LTR ERVL 0 464 105 207 340 123 0 chr15 23889828 23889934 -61805820 + MIR3 SINE MIR 14 132 -76 269 238 16 0 chr15 23890421 23890484 -61805270 + MLT1K LTR MaLR 511 574 -14 2124 136 0 0 chr15 23891565 23891867 -61803887 + AluSq SINE Alu 1 302 -11 34 65 0 0 chr15 23892568 23892630 -61803124 + AT_rich Low_complexity Low_complexity 1 62 0 230 296 115 12 chr15 23892749 23892992 -61802762 - L1ME4a LINE L1 -186 5935 5668 611 319 85 17 chr15 23895092 23895619 -61800135 + HAL1b LINE L1 279 841 -507 5957 104 11 18 chr15 23895889 23896943 -61798811 + L1P3 LINE L1 923 1952 -4509 2598 61 302 16 chr15 23897077 23897517 -61798237 - L1P LINE L1 -5088 1058 493 * 7528 32 0 0 chr15 23897502 23898419 -61797335 + L1P LINE L1 1539 2455 -3691 10663 111 13 1 chr15 23898563 23900215 -61795539 + L1P3 LINE L1 1913 3584 -2877 782 74 0 0 chr15 23900212 23900320 -61795434 - L1P LINE L1 -4780 1366 1259 * 14623 96 4 4 chr15 23900420 23902583 -61793171 + L1PA2 LINE L1 2548 4711 -1435 7311 23 1 0 chr15 23902688 23903837 -61791917 + L1PA2 LINE L1 4997 6152 -3 2705 98 2 2 chr15 23903852 23904249 -61791505 + L1P3 LINE L1 3567 3963 -2498 4453 64 24 0 chr15 23904249 23904820 -61790934 + L1PA7 LINE L1 5556 6148 -6 371 305 106 16 chr15 23904834 23905276 -61790478 - L1ME4a LINE L1 -294 5827 5332 1531 233 65 27 chr15 23905503 23905949 -61789805 - L1MCa LINE L1 -5959 467 5 1718 185 82 23 chr15 23906969 23907007 -61788747 - MLT2B1 LTR ERVL -5 515 481 309 51 0 0 chr15 23907007 23907046 -61788708 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1718 185 82 23 chr15 23907046 23907446 -61788308 - MLT2B1 LTR ERVL -39 481 1 283 335 28 51 chr15 23907727 23907903 -61787851 - L2 LINE L2 -210 3062 2891 238 284 15 0 chr15 23907974 23908041 -61787713 - L2 LINE L2 -1020 2294 2227 481 248 43 98 chr15 23908138 23908372 -61787382 + MER102a DNA MER1_type 78 298 -32 23 33 0 0 chr15 23908704 23908734 -61787020 + AT_rich Low_complexity Low_complexity 1 30 0 772 201 17 11 chr15 23908973 23909147 -61786607 - L1MC3 LINE L1 -8 7777 7603 21 36 0 0 chr15 23909147 23909175 -61786579 + AT_rich Low_complexity Low_complexity 1 28 0 1834 114 70 84 chr15 23909298 23909667 -61786087 - THE1B LTR MaLR 0 364 1 9334 118 14 18 chr15 23909667 23911278 -61784476 - THE1B-int LTR MaLR 0 1651 87 244 155 113 0 chr15 23911734 23911805 -61783949 - L1MCa LINE L1 -3900 2528 2450 340 221 158 11 chr15 23911826 23911921 -61783833 - L1MCa LINE L1 -4022 2404 2296 435 19 0 0 chr15 23913780 23913832 -61781922 + (CA)n Simple_repeat Simple_repeat 1 52 0 186 43 0 0 chr15 23913831 23913854 -61781900 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 203 241 155 0 chr15 23914519 23914577 -61781177 + MIR SINE MIR 75 141 -121 315 312 65 40 chr15 23914797 23914996 -61780758 - MIR SINE MIR -9 253 50 1845 90 0 12 chr15 23916705 23916960 -61778794 - PABL_B LTR ERV1 -2 665 414 1985 226 46 20 chr15 23917101 23917640 -61778114 - L1P LINE L1 -2130 4016 3464 4251 196 20 14 chr15 23917655 23918608 -61777146 + L1 LINE L1 4025 4983 -1163 236 221 156 0 chr15 23919215 23919292 -61776462 + MIR SINE MIR 122 210 -52 545 246 129 12 chr15 23919433 23919775 -61775979 - L1MDb LINE L1 -2718 4239 3858 449 259 101 50 chr15 23919770 23920466 -61775288 - L1MDb LINE L1 -4916 2043 1206 * 375 60 0 0 chr15 23921470 23921520 -61774234 + (TG)n Simple_repeat Simple_repeat 2 51 0 369 109 0 0 chr15 23922451 23922506 -61773248 + (CA)n Simple_repeat Simple_repeat 1 55 0 342 315 11 0 chr15 23922648 23922740 -61773014 + MIR SINE MIR 30 122 -140 333 296 127 26 chr15 23922860 23923049 -61772705 + LTR16C LTR ERVL 277 484 -7 857 320 42 46 chr15 23923051 23923725 -61772029 - ERVL LTR ERVL -3211 2482 1761 216 0 0 0 chr15 23924071 23924095 -61771659 + (T)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr15 23924768 23924790 -61770964 + AT_rich Low_complexity Low_complexity 1 22 0 826 198 31 47 chr15 23926639 23926831 -61768923 + MER5A DNA MER1_type 1 189 0 2165 101 7 10 chr15 23928022 23928330 -61767424 - AluY SINE Alu -2 309 3 23 54 0 0 chr15 23928844 23928881 -61766873 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr15 23930205 23930235 -61765519 + AT_rich Low_complexity Low_complexity 1 30 0 341 287 37 7 chr15 23930341 23930477 -61765277 + L1MEd LINE L1 1258 1397 -5019 405 284 156 24 chr15 23930514 23930725 -61765029 + L1MEd LINE L1 1278 1516 -4910 348 299 84 37 chr15 23930944 23931158 -61764596 - L1ME2 LINE L1 -224 5940 5717 3820 105 19 8 chr15 23931188 23931778 -61763976 + L1MA1 LINE L1 5707 6302 0 23 92 0 0 chr15 23931778 23931843 -61763911 + AT_rich Low_complexity Low_complexity 1 65 0 323 336 129 13 chr15 23931858 23932239 -61763515 - L1ME2 LINE L1 -1542 4604 4180 270 318 40 11 chr15 23932370 23932546 -61763208 - L1ME2 LINE L1 -2153 3993 3813 609 295 141 59 chr15 23932563 23933740 -61762014 - L1ME2 LINE L1 -2381 3765 2430 268 289 106 19 chr15 23934473 23934577 -61761177 + L2 LINE L2 3197 3309 -4 607 70 0 20 chr15 23935384 23935484 -61760270 + (CATA)n Simple_repeat Simple_repeat 2 99 0 654 203 0 0 chr15 23936534 23936652 -61759102 + FLAM_C SINE Alu 1 118 -15 22 56 0 0 chr15 23936652 23936688 -61759066 + AT_rich Low_complexity Low_complexity 1 36 0 201 139 0 0 chr15 23937941 23937984 -61757770 + (GA)n Simple_repeat Simple_repeat 2 44 0 13096 75 15 4 chr15 23939624 23941864 -61753890 + L1P1 LINE L1 3519 5782 -373 3616 136 2 10 chr15 23942094 23942690 -61753064 + L1PA3 LINE L1 5562 6152 -3 1807 276 93 33 chr15 23942690 23944756 -61750998 + L1MEc LINE L1 1055 3210 -3005 5609 149 36 16 chr15 23944926 23945957 -61749797 - THE1-int LTR MaLR -94 1486 435 1925 182 88 16 chr15 23946072 23946506 -61749248 - MER4E-int LTR ERV1 -106 6652 6188 5689 130 157 6 chr15 23946506 23947559 -61748195 + MER11B LTR ERVK 1 1212 -24 2271 139 79 23 chr15 23947702 23948423 -61747331 - MER4E-int LTR ERV1 -1455 5303 4452 * 3607 152 57 11 chr15 23948422 23949041 -61746713 - MER4E-int LTR ERV1 -2670 4088 3442 5471 126 109 29 chr15 23949058 23950683 -61745071 - MER4E-int LTR ERV1 -4088 2670 1444 4821 138 65 13 chr15 23950694 23951764 -61743990 - MER4E-int LTR ERV1 -5578 1180 1 5024 86 29 25 chr15 23951769 23952527 -61743227 - MER4E LTR ERV1 -5 761 1 1773 206 68 36 chr15 23952583 23952953 -61742801 - MER67D LTR ERV1 0 514 157 396 40 0 0 chr15 23952953 23953003 -61742751 + (TGAA)n Simple_repeat Simple_repeat 2 51 0 888 101 0 0 chr15 23953009 23953138 -61742616 - L1PA13 LINE L1 -7 6156 6028 1773 206 68 36 chr15 23953138 23953256 -61742498 - MER67D LTR ERV1 -361 153 3 236 324 135 11 chr15 23955912 23956097 -61739657 + MIR SINE MIR 23 230 -32 423 168 47 28 chr15 23956872 23956979 -61738775 - MER5A DNA MER1_type -77 112 4 2453 149 16 10 chr15 23957049 23957560 -61738194 - LTR9 LTR ERV1 0 612 1 217 290 0 0 chr15 23957560 23957622 -61738132 + L2 LINE L2 3249 3310 -3 990 323 33 11 chr15 23958935 23959384 -61736370 + LTR16B LTR ERVL 5 463 -1 272 319 123 43 chr15 23959945 23960108 -61735646 + LTR67 LTR ERVL 2 177 -380 516 250 66 31 chr15 23962535 23962731 -61733023 - MLT1C LTR MaLR -153 314 112 1975 107 0 28 chr15 23963462 23963778 -61731976 + AluSg SINE Alu 1 308 0 275 245 43 0 chr15 23963855 23963949 -61731805 + (TA)n Simple_repeat Simple_repeat 2 99 0 339 384 67 27 chr15 23964582 23964913 -61730841 + L1MDa LINE L1 6 349 -6191 632 258 70 85 chr15 23965449 23966035 -61729719 + L1MDa LINE L1 916 1492 -5051 5845 217 60 64 chr15 23966136 23972093 -61723661 + L1MA4 LINE L1 312 5979 -503 2454 77 0 0 chr15 23972093 23972404 -61723350 + AluY SINE Alu 1 311 0 5845 217 60 64 chr15 23972404 23972901 -61722853 + L1MA4 LINE L1 5979 6476 -6 1189 252 52 43 chr15 23973295 23973377 -61722377 + L1MDa LINE L1 1565 1645 -4895 2274 161 14 48 chr15 23973377 23973818 -61721936 + MSTB LTR MaLR 1 426 0 1189 252 52 43 chr15 23973818 23974295 -61721459 + L1MDa LINE L1 1645 2129 -4411 364 89 0 36 chr15 23974329 23974385 -61721369 + MADE1 DNA Mariner 3 56 -24 391 235 55 84 chr15 23974407 23974645 -61721109 + L1MDa LINE L1 2334 2564 -3976 343 282 40 101 chr15 23974645 23975021 -61720733 - L1MCc LINE L1 -6047 376 24 26 30 0 0 chr15 23975094 23975127 -61720627 + AT_rich Low_complexity Low_complexity 1 33 0 1405 171 146 36 chr15 23975269 23975625 -61720129 + LTR52 LTR ERVL 1 395 -26 518 338 112 33 chr15 23975900 23976383 -61719371 - LTR33 LTR ERVL 0 521 1 26 0 0 0 chr15 23976880 23976906 -61718848 + AT_rich Low_complexity Low_complexity 1 26 0 724 179 7 0 chr15 23978034 23978174 -61717580 - L1 LINE L1 -2122 4024 3884 3893 170 29 22 chr15 23978290 23979331 -61716423 + L1PA16 LINE L1 4975 6017 -149 329 339 0 39 chr15 23979418 23979545 -61716209 + MER5A DNA MER1_type 44 165 -24 26 30 0 0 chr15 23979750 23979783 -61715971 + AT_rich Low_complexity Low_complexity 1 33 0 952 220 6 0 chr15 23979919 23980096 -61715658 - MER45A DNA AcHobo 0 178 1 34 19 0 19 chr15 23980646 23980679 -61715075 + AT_rich Low_complexity Low_complexity 1 34 -17 2062 113 0 3 chr15 23980679 23980963 -61714791 - AluSg SINE Alu -27 283 1 34 19 0 19 chr15 23980963 23980981 -61714773 + AT_rich Low_complexity Low_complexity 34 51 0 689 37 0 0 chr15 23981167 23981248 -61714506 - PABL_B LTR ERV1 -586 81 1 182 356 0 35 chr15 23981368 23981420 -61714334 + MIR SINE MIR 46 94 -168 476 274 192 0 chr15 23981420 23981566 -61714188 - MER5A DNA MER1_type -1 188 15 5271 85 14 13 chr15 23983636 23984401 -61711353 - MER4E LTR ERV1 0 766 1 252 0 0 0 chr15 23984684 23984712 -61711042 + (A)n Simple_repeat Simple_repeat 1 28 0 3982 202 40 12 chr15 23985298 23986411 -61709343 - L1MA5 LINE L1 -267 7054 5880 1634 159 83 26 chr15 23986411 23986762 -61708992 - THE1C LTR MaLR 0 375 5 3982 202 40 12 chr15 23986762 23987242 -61708512 - L1MA5 LINE L1 -1441 5880 5415 * 9190 201 85 50 chr15 23987225 23990138 -61705616 - L1MA5 LINE L1 -4111 3057 16 586 219 110 0 chr15 23990507 23990662 -61705092 - LTR16C LTR ERVL 0 491 320 211 191 0 0 chr15 23991027 23991069 -61704685 + CT-rich Low_complexity Low_complexity 1 42 0 243 275 12 123 chr15 23991069 23991240 -61704514 - MIR SINE MIR -2 260 109 21 0 0 0 chr15 23991359 23991380 -61704374 + AT_rich Low_complexity Low_complexity 1 21 0 241 303 66 66 chr15 23991453 23991605 -61704149 + MIR SINE MIR 17 168 -94 185 292 21 0 chr15 23993300 23993348 -61702406 + L2 LINE L2 3218 3266 -6 22 0 0 0 chr15 23993464 23993486 -61702268 + AT_rich Low_complexity Low_complexity 1 22 0 33 73 0 0 chr15 23993921 23993989 -61701765 + AT_rich Low_complexity Low_complexity 1 68 0 22 0 0 0 chr15 23995318 23995340 -61700414 + AT_rich Low_complexity Low_complexity 1 22 0 509 253 0 11 chr15 23997079 23997174 -61698580 + MER81 DNA DNA 1 94 -20 346 340 194 9 chr15 23997229 23997461 -61698293 + L2 LINE L2 2513 2787 -527 1017 297 88 17 chr15 23997547 23998240 -61697514 - L2 LINE L2 0 3313 2562 223 317 25 67 chr15 23998411 23998531 -61697223 + L2 LINE L2 3035 3149 -123 190 200 0 22 chr15 23998602 23998647 -61697107 + L2 LINE L2 3269 3312 -1 247 238 150 0 chr15 23998751 23998831 -61696923 - L2 LINE L2 0 3313 3222 214 259 0 108 chr15 23999732 23999832 -61695922 + MIR SINE MIR 2 93 -115 296 294 77 35 chr15 24000808 24000951 -61694803 + MIR SINE MIR 66 214 -48 1546 146 119 26 chr15 24003092 24003435 -61692319 + THE1C LTR MaLR 1 375 0 1081 188 22 5 chr15 24003440 24003664 -61692090 + THE1C-int LTR MaLR 6 233 -1347 423 244 94 33 chr15 24003666 24003846 -61691908 + THE1B LTR MaLR 161 351 -13 332 298 11 11 chr15 24004521 24004615 -61691139 - MER5A DNA MER1_type -95 94 1 21 89 0 0 chr15 24005131 24005187 -61690567 + AT_rich Low_complexity Low_complexity 1 56 0 26 0 0 0 chr15 24006118 24006144 -61689610 + AT_rich Low_complexity Low_complexity 1 26 0 233 253 179 11 chr15 24006157 24006252 -61689502 - MIR SINE MIR 0 262 152 361 291 121 6 chr15 24006291 24006456 -61689298 - MIR SINE MIR -77 185 2 248 325 24 8 chr15 24006463 24006586 -61689168 + Charlie8 DNA MER1_type 109 233 -2184 229 347 48 16 chr15 24006926 24007050 -61688704 + MIR SINE MIR 2 129 -133 22 0 0 0 chr15 24008385 24008407 -61687347 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr15 24008517 24008562 -61687192 + AT_rich Low_complexity Low_complexity 1 45 0 335 216 97 30 chr15 24009362 24009496 -61686258 - MLT1H1 LTR MaLR -60 530 388 465 264 78 56 chr15 24009498 24009729 -61686025 - MLT1H1 LTR MaLR -313 242 7 563 309 53 0 chr15 24009826 24010014 -61685740 - LTR16A LTR ERVL 0 450 253 370 209 47 0 chr15 24010133 24010219 -61685535 + THE1B LTR MaLR 304 393 -3 * 574 179 9 27 chr15 24010219 24010327 -61685427 - MLT1E2 LTR MaLR -513 113 8 478 291 128 6 chr15 24010390 24010569 -61685185 + L2 LINE L2 3113 3313 0 557 209 22 22 chr15 24010774 24010908 -61684846 - AluJo SINE Alu -178 134 1 25 0 0 0 chr15 24011724 24011749 -61684005 + AT_rich Low_complexity Low_complexity 1 25 0 610 257 32 46 chr15 24011912 24012192 -61683562 + L1M4 LINE L1 4822 5097 -1049 21 0 0 0 chr15 24012616 24012637 -61683117 + AT_rich Low_complexity Low_complexity 1 21 0 317 24 24 0 chr15 24013115 24013157 -61682597 + (CA)n Simple_repeat Simple_repeat 1 43 0 308 246 34 42 chr15 24013179 24013297 -61682457 + L1M4 LINE L1 1591 1707 -4835 674 212 75 35 chr15 24013352 24013578 -61682176 + L1M4 LINE L1 4294 4528 -2116 560 257 73 5 chr15 24013617 24013823 -61681931 + L1ME1 LINE L1 3608 3827 -2319 2607 247 78 17 chr15 24013834 24015705 -61680049 + L1ME1 LINE L1 4085 6151 -15 221 159 45 0 chr15 24015716 24015760 -61679994 + A-rich Low_complexity Low_complexity 6 51 0 255 246 0 0 chr15 24016152 24016209 -61679545 + MER103 DNA DNA 42 98 -68 423 329 13 13 chr15 24016321 24016476 -61679278 - MLT1J2 LTR MaLR -291 159 5 260 250 31 52 chr15 24016846 24016942 -61678812 - MIR SINE MIR -56 206 113 193 402 12 30 chr15 24017432 24017601 -61678153 - L2 LINE L2 -290 2982 2817 4677 246 59 39 chr15 24018085 24019494 -61676260 + L1M4 LINE L1 15 1395 -5251 2086 121 13 0 chr15 24019494 24019808 -61675946 + L1PA10 LINE L1 5848 6165 -3 4677 246 59 39 chr15 24019808 24020366 -61675388 + L1M4 LINE L1 1395 2031 -4615 7724 92 5 14 chr15 24020366 24021447 -61674307 - MER11C LTR ERVK 0 1071 1 4677 246 59 39 chr15 24021447 24021502 -61674252 + L1M4 LINE L1 2031 2083 -4563 1485 86 34 10 chr15 24021613 24021822 -61673932 + LTR66 LTR ERVL 1 214 -396 227 301 9 0 chr15 24021879 24021992 -61673762 + (CATATA)n Simple_repeat Simple_repeat 2 115 0 228 286 11 22 chr15 24021992 24022083 -61673671 - L1MC4 LINE L1 -1339 6703 6614 228 279 47 0 chr15 24022027 24022113 -61673641 + L1MC4 LINE L1 6614 6703 -1339 285 217 43 14 chr15 24022161 24022230 -61673524 + MER7A DNA MER2_type 3 73 -275 195 184 0 0 chr15 24022230 24022268 -61673486 + (TG)n Simple_repeat Simple_repeat 1 38 0 263 177 16 0 chr15 24022326 24022388 -61673366 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 2124 167 9 0 chr15 24022389 24022731 -61673023 + MER7A DNA MER2_type 3 345 -1 1831 241 64 73 chr15 24022935 24023355 -61672399 + L1M4 LINE L1 2684 3095 -3549 2300 53 3 66 chr15 24023355 24023673 -61672081 - AluY SINE Alu -13 298 1 1831 241 64 73 chr15 24023673 24024092 -61671662 + L1M4 LINE L1 3095 3516 -3128 1234 206 73 24 chr15 24024125 24024494 -61671260 - L1 LINE L1 -1547 4599 4213 1316 126 23 0 chr15 24024496 24024710 -61671044 + L1PB4 LINE L1 5931 6149 -7 6390 228 64 34 chr15 24024734 24027056 -61668698 + L1M4 LINE L1 3535 5946 -726 257 282 56 0 chr15 24027176 24027247 -61668507 + MER91C DNA MER1_type 34 108 -32 360 321 34 63 chr15 24028400 24028637 -61667117 + MIR SINE MIR 28 257 -5 630 291 65 0 chr15 24028919 24029118 -61666636 + MIR SINE MIR 10 221 -41 23 68 0 0 chr15 24029325 24029369 -61666385 + AT_rich Low_complexity Low_complexity 1 44 0 1424 226 49 133 chr15 24029555 24029902 -61665852 + L1ME1 LINE L1 4076 4451 -1695 38 0 0 0 chr15 24029902 24029940 -61665814 + AT_rich Low_complexity Low_complexity 1 38 0 1424 226 49 133 chr15 24029940 24030561 -61665193 + L1ME1 LINE L1 4451 4996 -1150 625 254 31 36 chr15 24030568 24030807 -61664947 + L1ME1 LINE L1 5942 6163 -1 33 0 0 0 chr15 24031533 24031566 -61664188 + AT_rich Low_complexity Low_complexity 1 33 0 5496 164 20 21 chr15 24031998 24033371 -61662383 - L1P5 LINE L1 -381 5775 4398 189 0 0 0 chr15 24033371 24033392 -61662362 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 5496 164 20 21 chr15 24033392 24033639 -61662115 - L1P5 LINE L1 -1758 4398 4152 573 139 0 30 chr15 24034900 24035001 -61660753 + MER4A LTR ERV1 1 98 -566 1655 146 26 22 chr15 24035001 24035343 -61660411 + MER4A LTR ERV1 263 664 0 262 242 32 0 chr15 24035517 24035579 -61660175 + MIR SINE MIR 87 150 -112 3640 166 71 38 chr15 24035586 24036385 -61659369 - LTR1B LTR ERV1 0 826 1 408 293 54 7 chr15 24036532 24036679 -61659075 + L2 LINE L2 3160 3313 0 240 373 16 8 chr15 24036992 24037118 -61658636 - L2 LINE L2 -842 2472 2346 383 272 84 47 chr15 24037136 24037349 -61658405 - MIR SINE MIR -11 251 31 4245 197 18 6 chr15 24037874 24038781 -61656973 - L1 LINE L1 -1997 4149 3232 5627 185 21 40 chr15 24038809 24039666 -61656088 - L1MC1 LINE L1 -1 6332 5460 2254 106 0 0 chr15 24039666 24039959 -61655795 - AluSc SINE Alu -16 293 1 5627 185 21 40 chr15 24039959 24040515 -61655239 - L1MC1 LINE L1 -873 5460 4943 195 42 0 0 chr15 24040515 24040539 -61655215 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5627 185 21 40 chr15 24040539 24040829 -61654925 - L1MC1 LINE L1 -1390 4943 4649 1539 228 94 59 chr15 24040821 24041053 -61654701 - L1M4 LINE L1 -1299 4847 4624 * 1619 222 3 0 chr15 24041053 24041359 -61654395 + AluJo SINE Alu 5 311 -1 1539 228 94 59 chr15 24041359 24041820 -61653934 - L1M4 LINE L1 -1522 4624 4130 48 93 0 0 chr15 24042334 24042473 -61653281 + AT_rich Low_complexity Low_complexity 1 139 0 333 207 62 41 chr15 24042641 24042786 -61652968 - L1MC5 LINE L1 -227 7734 7587 507 234 7 26 chr15 24042977 24043131 -61652623 - L1M4 LINE L1 -3136 3010 2860 23 78 0 0 chr15 24043135 24043186 -61652568 + AT_rich Low_complexity Low_complexity 1 51 0 324 329 54 7 chr15 24043298 24043447 -61652307 - L1MC1 LINE L1 -2143 4003 3848 214 255 7 114 chr15 24043513 24043662 -61652092 - L2 LINE L2 -1235 2079 1947 2045 157 45 0 chr15 24044593 24044925 -61650829 - MER7A DNA MER2_type -1 345 1 23 54 0 0 chr15 24045199 24045236 -61650518 + AT_rich Low_complexity Low_complexity 1 37 0 548 291 80 25 chr15 24047572 24047809 -61647945 - MIR SINE MIR -3 259 10 1035 249 58 34 chr15 24049338 24049719 -61646035 + MLT1B LTR MaLR 1 390 0 302 327 97 22 chr15 24050727 24050953 -61644801 + L2 LINE L2 2621 2863 -451 1993 175 48 0 chr15 24051010 24051381 -61644373 + MLT1B LTR MaLR 2 390 0 1594 189 5 65 chr15 24051403 24051789 -61643965 + MLT1A1 LTR MaLR 1 363 -2 549 275 85 64 chr15 24051967 24052412 -61643342 + MLT1J LTR MaLR 38 594 -21 1363 198 189 28 chr15 24052477 24052912 -61642842 - MLT1D LTR MaLR 0 505 1 440 323 173 19 chr15 24053723 24054036 -61641718 - L3 LINE CR1 -100 1477 1117 23 0 0 0 chr15 24054241 24054264 -61641490 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr15 24054291 24054328 -61641426 + AT_rich Low_complexity Low_complexity 1 37 0 203 162 0 0 chr15 24054825 24054862 -61640892 + A-rich Low_complexity Low_complexity 3 39 0 12596 125 20 1 chr15 24055000 24057411 -61638343 - L1PA8A LINE L1 -13 6118 3667 396 0 0 0 chr15 24057411 24057455 -61638299 + (TG)n Simple_repeat Simple_repeat 2 45 0 12596 125 20 1 chr15 24057455 24057780 -61637974 - L1PA8A LINE L1 -2464 3667 3349 5939 145 0 11 chr15 24057781 24058794 -61636960 + L1P LINE L1 1786 2787 -3359 7400 181 19 15 chr15 24058940 24061277 -61634477 + L1MA9 LINE L1 3775 6121 -191 210 36 107 0 chr15 24061277 24061333 -61634421 + (TA)n Simple_repeat Simple_repeat 1 62 0 1777 161 0 7 chr15 24061333 24061606 -61634148 - AluSx SINE Alu -41 271 1 1453 89 27 0 chr15 24061607 24061832 -61633922 + L1MA9 LINE L1 6082 6312 0 794 321 25 19 chr15 24064699 24065017 -61630737 - LTR16A LTR ERVL -84 366 47 285 193 96 36 chr15 24065030 24065113 -61630641 + LTR16C LTR ERVL 393 480 -11 328 259 80 85 chr15 24065202 24065426 -61630328 + MIR SINE MIR 13 235 -27 319 305 50 13 chr15 24065599 24065723 -61630031 + MIR SINE MIR 31 157 -65 275 182 18 0 chr15 24065774 24065829 -61629925 - L2 LINE L2 -2 3311 3256 3817 115 53 76 chr15 24065874 24066677 -61629077 + LTR1 LTR ERV1 1 785 0 683 272 6 6 chr15 24067012 24067185 -61628569 + MIR SINE MIR 80 252 -10 556 227 80 0 chr15 24067952 24068102 -61627652 - MIR SINE MIR -4 258 97 401 296 49 31 chr15 24068257 24068419 -61627335 + L2 LINE L2 3148 3312 -1 227 221 15 15 chr15 24068600 24068668 -61627086 - L1MD3 LINE L1 -5 7990 7923 478 270 139 36 chr15 24068688 24069106 -61626648 - L1ME4a LINE L1 -21 6100 5640 42 0 0 0 chr15 24069111 24069153 -61626601 + AT_rich Low_complexity Low_complexity 1 42 0 905 272 98 88 chr15 24070496 24071215 -61624539 + L1MEc LINE L1 30 740 -5656 1864 114 7 4 chr15 24071215 24071496 -61624258 + AluSx SINE Alu 1 282 -30 905 272 98 88 chr15 24071496 24071638 -61624116 + L1MEc LINE L1 740 879 -5517 2261 97 7 3 chr15 24071638 24071948 -61623806 + AluSp SINE Alu 3 313 0 905 272 98 88 chr15 24071948 24072162 -61623592 + L1MEc LINE L1 879 1117 -5279 443 279 7 7 chr15 24072154 24072294 -61623460 + L1M4 LINE L1 3791 3930 -2216 * 538 250 156 5 chr15 24072490 24072682 -61623072 + LTR33 LTR ERVL 54 274 -247 263 247 86 0 chr15 24072737 24072818 -61622936 + LTR33 LTR ERVL 434 521 0 1603 126 59 30 chr15 24073499 24073796 -61621958 - AluSg SINE Alu 0 307 3 644 155 14 106 chr15 24074923 24075130 -61620624 + MER53 DNA DNA 1 188 -1 844 357 59 28 chr15 24076024 24076781 -61618973 + ERVL LTR ERVL 4544 5324 -440 21 0 0 0 chr15 24077324 24077345 -61618409 + AT_rich Low_complexity Low_complexity 1 21 0 1100 289 43 102 chr15 24077347 24078180 -61617574 + L2 LINE L2 2498 3275 -38 757 227 160 14 chr15 24080179 24080461 -61615293 - L1ME3 LINE L1 -224 5938 5616 370 294 8 8 chr15 24080467 24080593 -61615161 + L1ME2 LINE L1 6026 6151 -13 524 316 37 64 chr15 24081703 24081934 -61613820 - MER102a DNA MER1_type -1111 306 96 1214 167 14 5 chr15 24081934 24082150 -61613604 - L1PA15 LINE L1 -3 6162 5945 524 316 37 64 chr15 24082150 24082244 -61613510 - MER102a DNA MER1_type -1321 96 1 2574 141 84 26 chr15 24082269 24082723 -61613031 - LTR12 LTR ERV1 -234 480 1 1412 326 101 32 chr15 24083524 24083865 -61611889 + L2 LINE L2 1322 1638 -1676 2579 17 0 7 chr15 24083865 24084158 -61611596 + AluYa5 SINE Alu 16 306 -5 1412 326 101 32 chr15 24084158 24084731 -61611023 + L2 LINE L2 1638 2299 -1015 1052 298 14 26 chr15 24084732 24085152 -61610602 + L1ME3A LINE L1 5560 5974 -196 5761 151 26 18 chr15 24085165 24087032 -61608722 + L1MA2 LINE L1 4220 6099 -205 2126 102 40 3 chr15 24087032 24087352 -61608402 + L1MA2 LINE L1 5968 6304 0 21 36 0 0 chr15 24087352 24087380 -61608374 + AT_rich Low_complexity Low_complexity 1 28 0 2107 57 42 7 chr15 24087974 24088257 -61607497 - AluY SINE Alu -18 293 1 334 237 34 42 chr15 24088369 24088487 -61607267 - L1M4 LINE L1 -2507 3639 3523 317 307 126 47 chr15 24088508 24088762 -61606992 + L1MC/D LINE L1 3422 3695 -2451 266 267 78 17 chr15 24088769 24088885 -61606869 + L1MC/D LINE L1 3705 3827 -2319 24 0 0 0 chr15 24088885 24088909 -61606845 + AT_rich Low_complexity Low_complexity 1 24 0 206 179 0 60 chr15 24089021 24089088 -61606666 + (TATAA)n Simple_repeat Simple_repeat 3 65 0 744 310 120 57 chr15 24089088 24089794 -61605960 + L1MC/D LINE L1 4092 4842 -1304 235 343 0 0 chr15 24089820 24089890 -61605864 + L1MC/D LINE L1 5476 5545 -2263 276 329 46 7 chr15 24090032 24090184 -61605570 + L1MC/D LINE L1 5724 5881 -1927 22 56 0 0 chr15 24090231 24090267 -61605487 + AT_rich Low_complexity Low_complexity 1 36 0 545 217 0 91 chr15 24090298 24090441 -61605313 - FLAM_A SINE Alu 0 133 4 1850 195 9 12 chr15 24092084 24092427 -61603327 + MER7A DNA MER2_type 7 346 0 3030 241 35 48 chr15 24092713 24093615 -61602139 + L1M4 LINE L1 2 892 -5650 2890 162 27 73 chr15 24093622 24094250 -61601504 + LTR9 LTR ERV1 14 612 0 1697 265 58 65 chr15 24094250 24094387 -61601367 + L1M4 LINE L1 1096 1232 -5414 2091 141 118 8 chr15 24094387 24094769 -61600985 + MSTA LTR MaLR 5 428 0 1697 265 58 65 chr15 24094769 24095449 -61600305 + L1M4 LINE L1 1232 1909 -4737 1271 179 151 0 chr15 24095449 24095700 -61600054 + AluJb SINE Alu 1 289 -13 1697 265 58 65 chr15 24095700 24095826 -61599928 + L1M4 LINE L1 1909 2034 -4612 * 4614 167 52 19 chr15 24095821 24096308 -61599446 + L1MA4 LINE L1 5305 5774 -526 411 21 0 0 chr15 24096308 24096356 -61599398 + (TA)n Simple_repeat Simple_repeat 1 48 0 207 0 0 0 chr15 24096355 24096378 -61599376 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 4614 167 52 19 chr15 24096356 24096852 -61598902 + L1MA4 LINE L1 5774 6298 -2 1439 252 35 25 chr15 24096867 24097718 -61598036 + L1M4 LINE L1 2200 3011 -3633 11495 214 36 26 chr15 24097718 24099190 -61596564 + L1PA16 LINE L1 2721 4177 -2692 372 22 0 0 chr15 24099190 24099235 -61596519 + (CA)n Simple_repeat Simple_repeat 2 46 0 11495 214 36 26 chr15 24099235 24101856 -61593898 + L1PA16 LINE L1 4177 6869 0 4501 252 43 31 chr15 24101852 24103486 -61592268 + L1M4 LINE L1 2997 4655 -1989 * 2350 97 0 0 chr15 24103486 24103794 -61591960 + AluSc SINE Alu 1 308 -1 4501 252 43 31 chr15 24103794 24103915 -61591839 + L1M4 LINE L1 4655 4773 -1871 1868 241 65 20 chr15 24103895 24104607 -61591147 + L1M4 LINE L1 5233 5978 -686 * 7297 186 33 11 chr15 24104580 24105172 -61590582 + L1P5 LINE L1 4150 4728 -1921 1949 123 3 7 chr15 24105172 24105485 -61590269 + AluSq SINE Alu 1 312 0 7297 186 33 11 chr15 24105485 24106758 -61588996 + L1P5 LINE L1 4728 6050 -599 259 264 71 47 chr15 24106892 24107214 -61588540 - L1MEc LINE L1 -5061 1335 1006 1236 214 10 75 chr15 24107476 24107771 -61587983 - MSTD LTR MaLR 0 396 121 252 0 0 0 chr15 24107806 24107834 -61587920 + (TA)n Simple_repeat Simple_repeat 2 29 0 3157 67 0 7 chr15 24107910 24108313 -61587441 - MLT2A1 LTR ERVL -44 400 1 512 133 296 0 chr15 24108313 24108410 -61587344 - MSTD LTR MaLR -270 126 1 6322 249 25 38 chr15 24108410 24110166 -61585588 - MSTD-int LTR MaLR 0 1735 2 197 33 33 0 chr15 24110216 24110246 -61585508 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2044 135 22 19 chr15 24110246 24110608 -61585146 - L1PB1 LINE L1 -7 6144 5782 298 101 0 63 chr15 24110625 24110704 -61585050 + (TATATG)n Simple_repeat Simple_repeat 3 76 0 305 143 0 0 chr15 24110704 24110760 -61584994 + L1P5 LINE L1 5782 5837 -314 283 103 0 0 chr15 24110800 24110839 -61584915 + L1P5 LINE L1 5737 5775 -376 288 0 0 0 chr15 24110843 24110875 -61584879 + (TG)n Simple_repeat Simple_repeat 2 33 0 22 0 0 0 chr15 24111072 24111094 -61584660 + AT_rich Low_complexity Low_complexity 1 22 0 288 306 103 29 chr15 24111174 24111658 -61584096 + L1ME3A LINE L1 4766 5285 -861 308 307 64 49 chr15 24111664 24111928 -61583826 + L1ME3A LINE L1 5315 5582 -580 2024 190 53 18 chr15 24111941 24112442 -61583312 + MER44D DNA MER2_type 1 605 0 666 313 42 0 chr15 24112471 24112778 -61582976 + L1ME3A LINE L1 5628 5947 -223 24 53 0 0 chr15 24112976 24113014 -61582740 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr15 24113785 24113806 -61581948 + AT_rich Low_complexity Low_complexity 1 21 0 696 243 97 69 chr15 24114169 24114637 -61581117 - MLT1H1 LTR MaLR -14 535 1 204 250 0 0 chr15 24114786 24114826 -61580928 - MIR SINE MIR -3 259 220 339 151 79 167 chr15 24114847 24114973 -61580781 - MER53 DNA DNA -71 118 4 300 314 129 22 chr15 24114979 24115250 -61580504 + HAL1b LINE L1 591 890 -458 549 68 14 0 chr15 24115267 24115341 -61580413 - MADE1 DNA Mariner -5 75 1 287 263 53 38 chr15 24115492 24115625 -61580129 - LTR33 LTR ERVL -2 519 385 557 312 18 24 chr15 24115743 24115913 -61579841 - LTR33 LTR ERVL -344 177 9 613 295 139 34 chr15 24116214 24116675 -61579079 + L1MEc LINE L1 1381 1792 -4604 315 85 0 0 chr15 24116675 24116722 -61579032 + (TATAA)n Simple_repeat Simple_repeat 2 48 0 613 295 139 34 chr15 24116722 24117081 -61578673 + L1MEc LINE L1 1792 2287 -4109 338 252 44 71 chr15 24117099 24117325 -61578429 + L1MEc LINE L1 2316 2535 -3680 362 231 0 0 chr15 24117439 24117517 -61578237 + L1MEc LINE L1 2709 2786 -3429 378 0 0 0 chr15 24117602 24117649 -61578105 + (TAGA)n Simple_repeat Simple_repeat 1 89 0 378 0 0 0 chr15 24117649 24117691 -61578063 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 288 0 0 0 chr15 24117732 24117764 -61577990 + (TG)n Simple_repeat Simple_repeat 2 33 0 301 222 16 0 chr15 24117805 24117868 -61577886 - AluJ/FRAM SINE Alu -9 293 230 5462 121 15 10 chr15 24117882 24118812 -61576942 - L1PA13 LINE L1 0 6163 5203 6446 177 5 47 chr15 24118817 24119505 -61576249 + L1P LINE L1 3819 4469 -1677 267 89 22 0 chr15 24119505 24119550 -61576204 + MADE1 DNA Mariner 1 46 -34 6446 177 5 47 chr15 24119550 24120176 -61575578 + L1P LINE L1 4469 5120 -1026 19310 85 27 2 chr15 24120181 24122752 -61573002 + HERVL-A2 LTR ERVL 3019 5654 0 2304 152 55 19 chr15 24122752 24123268 -61572486 + MLT2A2 LTR ERVL 1 554 0 273 111 0 0 chr15 24123268 24123313 -61572441 + L1P LINE L1 5116 5160 -986 * 1131 290 93 55 chr15 24123305 24124572 -61571182 + L1MEc LINE L1 2929 4244 -1971 22 70 0 0 chr15 24124873 24124916 -61570838 + AT_rich Low_complexity Low_complexity 1 43 0 25489 141 13 23 chr15 24124950 24130159 -61565595 - L1PA8A LINE L1 0 6446 1248 189 74 0 0 chr15 24130159 24130186 -61565568 + (TTG)n Simple_repeat Simple_repeat 1 27 0 25489 141 13 23 chr15 24130186 24131422 -61564332 - L1PA8A LINE L1 -5198 1248 1 29 28 0 0 chr15 24132056 24132092 -61563662 + AT_rich Low_complexity Low_complexity 1 36 0 7918 15 0 1 chr15 24132125 24133359 -61562395 - L1HS LINE L1 0 6155 4923 3465 27 14 0 chr15 24133344 24133758 -61561996 + L1P LINE L1 4552 4971 -1175 * 1986 129 7 24 chr15 24133819 24134114 -61561640 - AluSx SINE Alu -20 292 3 814 198 20 10 chr15 24134526 24134723 -61561031 - L1MD1 LINE L1 0 6242 6044 290 205 0 26 chr15 24134749 24134827 -61560927 - L1MD1 LINE L1 -123 6119 6044 * 295 205 0 26 chr15 24134801 24134879 -61560875 - L1MD1 LINE L1 -123 6119 6044 281 205 0 26 chr15 24134905 24134983 -61560771 - L1MD1 LINE L1 -123 6119 6044 * 2203 224 25 22 chr15 24134957 24135041 -61560713 - L1MD1 LINE L1 -123 6119 6037 1613 154 37 7 chr15 24135041 24135313 -61560441 - AluJo SINE Alu -19 293 14 2203 224 25 22 chr15 24135313 24135753 -61560001 - L1MD1 LINE L1 -205 6037 5590 7458 35 0 0 chr15 24135753 24137140 -61558614 - L1PA4 LINE L1 -5 6150 4764 2203 224 25 22 chr15 24137140 24137168 -61558586 - L1MD1 LINE L1 -652 5590 5564 902 257 45 7 chr15 24137153 24137441 -61558313 - L1MD1 LINE L1 -2300 3846 3548 * 822 250 43 31 chr15 24137473 24137862 -61557892 - PABL_B LTR ERV1 -1 666 263 655 92 0 146 chr15 24137873 24138003 -61557751 - LTR19C LTR ERV1 -354 425 315 257 235 0 0 chr15 24138074 24138125 -61557629 - PABL_B LTR ERV1 -616 51 1 400 246 66 70 chr15 24138126 24138581 -61557173 - L1MD1 LINE L1 -2617 3529 3077 * 6906 196 81 5 chr15 24138549 24139991 -61555763 - L1 LINE L1 -997 5149 3201 7703 98 8 4 chr15 24139991 24141907 -61553847 - L1PA8 LINE L1 0 6172 4237 6906 196 81 5 chr15 24141907 24142508 -61553246 - L1 LINE L1 -2945 3201 2647 10613 172 12 5 chr15 24142522 24144262 -61551492 - L1 LINE L1 -5573 1992 241 24 32 0 0 chr15 24144630 24144661 -61551093 + AT_rich Low_complexity Low_complexity 1 31 0 1057 202 15 4 chr15 24144681 24144953 -61550801 - L1P LINE L1 -762 5384 5110 * 4053 127 19 0 chr15 24144951 24145573 -61550181 + L1PB1 LINE L1 5467 6100 -51 253 281 98 0 chr15 24146222 24146304 -61549450 - MIR SINE MIR -110 152 63 801 221 55 0 chr15 24146364 24146563 -61549191 + MLT2B2 LTR ERVL 1 210 -305 354 263 93 17 chr15 24146714 24146832 -61548922 + MIR SINE MIR 15 141 -121 1245 198 73 27 chr15 24147075 24147403 -61548351 - MER2 DNA MER2_type -1 343 1 1888 180 14 6 chr15 24147828 24148172 -61547582 + MER7A DNA MER2_type 2 346 0 501 62 0 0 chr15 24148500 24148565 -61547189 + (TA)n Simple_repeat Simple_repeat 2 66 0 5650 121 29 9 chr15 24148609 24149623 -61546131 - L1PB1 LINE L1 -2 6149 5118 23 0 0 0 chr15 24149906 24149929 -61545825 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr15 24149946 24149978 -61545776 + AT_rich Low_complexity Low_complexity 1 32 0 205 167 0 69 chr15 24150207 24150279 -61545475 + T-rich Low_complexity Low_complexity 6 72 0 23 54 0 0 chr15 24150512 24150549 -61545205 + AT_rich Low_complexity Low_complexity 1 37 0 332 339 36 0 chr15 24151062 24151174 -61544580 + L2 LINE L2 3142 3257 -15 225 241 109 40 chr15 24151317 24151491 -61544263 - L1M4 LINE L1 -1593 4553 4368 25 31 0 0 chr15 24151521 24151553 -61544201 + AT_rich Low_complexity Low_complexity 1 32 0 619 288 128 31 chr15 24151947 24152360 -61543394 + L1MCc LINE L1 17 469 -5954 * 1053 304 27 33 chr15 24152356 24152721 -61543033 + L1M3a LINE L1 33 395 -5560 307 342 32 26 chr15 24152817 24152972 -61542782 + L1M3a LINE L1 549 704 -5251 2487 270 50 43 chr15 24153016 24153996 -61541758 + L1M2 LINE L1 302 1274 -4760 2230 110 0 3 chr15 24153996 24154295 -61541459 + AluSq SINE Alu 2 299 -14 2487 270 50 43 chr15 24154295 24154838 -61540916 + L1M2 LINE L1 1274 1812 -4222 2339 79 0 55 chr15 24154838 24155166 -61540588 + AluY SINE Alu 1 310 -1 2487 270 50 43 chr15 24155166 24156488 -61539266 + L1M2 LINE L1 1812 2875 -3159 2025 202 25 36 chr15 24156510 24156956 -61538798 + MSTB2 LTR MaLR 17 457 0 5212 203 32 5 chr15 24156956 24158263 -61537491 + L1M2 LINE L1 2888 4229 -1805 3276 21 0 0 chr15 24158258 24158633 -61537121 - L1P2 LINE L1 -375 5779 5405 * 3975 202 42 19 chr15 24158657 24159315 -61536439 + L1M2 LINE L1 4217 4858 -1321 2217 123 0 0 chr15 24159315 24159616 -61536138 + AluSx SINE Alu 1 301 -11 3975 202 42 19 chr15 24159616 24160064 -61535690 + L1M2 LINE L1 4858 5294 -885 189 0 0 0 chr15 24160064 24160085 -61535669 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2022 135 0 0 chr15 24160086 24160398 -61535356 + AluSx SINE Alu 1 312 0 3975 202 42 19 chr15 24160398 24160689 -61535065 + L1M2 LINE L1 5293 5651 -528 866 339 28 10 chr15 24160706 24161104 -61534650 + L1PA12 LINE L1 10 414 -7167 12443 242 34 24 chr15 24161742 24162263 -61533491 + L1PA12 LINE L1 2182 2696 -4888 1973 127 0 24 chr15 24162263 24162589 -61533165 + AluSq SINE Alu 1 319 0 12443 242 34 24 chr15 24162589 24166393 -61529361 + L1PA12 LINE L1 2696 6573 -1011 201 94 0 0 chr15 24166393 24166425 -61529329 + (CAA)n Simple_repeat Simple_repeat 1 32 0 12443 242 34 24 chr15 24166425 24166548 -61529206 + L1PA12 LINE L1 6573 6693 -891 3236 188 27 15 chr15 24166560 24167728 -61528026 - L1MA9 LINE L1 -365 5947 4768 2201 175 42 5 chr15 24167714 24168148 -61527606 + L1MC1 LINE L1 5258 5707 -626 * 1811 146 52 9 chr15 24168148 24168475 -61527279 + L1MC1 LINE L1 5992 6333 0 332 284 18 18 chr15 24168482 24168591 -61527163 - MER5A DNA MER1_type -77 112 4 296 0 51 0 chr15 24169153 24169192 -61526562 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 1980 124 7 3 chr15 24169196 24169478 -61526276 - AluSx SINE Alu -29 283 1 196 118 20 20 chr15 24170818 24170869 -61524885 + (TA)n Simple_repeat Simple_repeat 2 52 0 2294 107 0 0 chr15 24172116 24172415 -61523339 - AluSx SINE Alu -13 299 1 247 367 41 30 chr15 24172974 24173143 -61522611 + MIR SINE MIR 76 246 -16 441 290 126 19 chr15 24174072 24174279 -61521475 + MIR SINE MIR 34 262 0 204 40 0 0 chr15 24174285 24174310 -61521444 + (ATG)n Simple_repeat Simple_repeat 2 26 0 640 85 54 16 chr15 24174737 24174866 -61520888 + CT-rich Low_complexity Low_complexity 3 136 0 4648 154 21 24 chr15 24175905 24176324 -61519430 - L1MA9 LINE L1 -74 6238 5820 2385 100 0 3 chr15 24176324 24176635 -61519119 - AluSg SINE Alu 0 310 1 4648 154 21 24 chr15 24176635 24177102 -61518652 - L1MA9 LINE L1 -492 5820 5354 201 372 37 61 chr15 24177523 24177687 -61518067 - MER91A DNA MER1_type -36 160 1 2284 107 3 0 chr15 24178039 24178339 -61517415 + AluSp SINE Alu 4 304 -9 296 167 69 0 chr15 24178343 24178415 -61517339 + L1ME2 LINE L1 5728 5804 -358 2612 120 63 18 chr15 24178416 24178858 -61516896 + MER4B LTR ERV1 1 462 -148 2418 151 31 5 chr15 24178858 24179281 -61516473 - MER57B LTR ERV1 0 434 1 1667 77 113 12 chr15 24179281 24179528 -61516226 - MER57B-int LTR ERV1 0 7537 7266 558 200 26 0 chr15 24179530 24179645 -61516109 - LTR54B LTR ERV1 -378 120 3 2128 131 48 12 chr15 24179646 24179982 -61515772 - MER57-int LTR ERV1 -388 7149 6802 * 4050 144 41 6 chr15 24179956 24180635 -61515119 - MER57-int LTR ERV1 -3823 3714 3012 274 98 0 0 chr15 24180635 24180676 -61515078 - MER57-int LTR ERV1 -4628 2909 2869 1085 236 25 14 chr15 24180736 24181020 -61514734 + L1ME2 LINE L1 5798 6084 -80 180 0 0 0 chr15 24181061 24181081 -61514673 + (TAAAA)n Simple_repeat Simple_repeat 5 24 0 272 306 0 0 chr15 24181586 24181648 -61514106 - LTR33 LTR ERVL -153 368 307 237 103 0 0 chr15 24182080 24182119 -61513635 + MADE1 DNA Mariner 42 80 0 731 316 135 28 chr15 24182400 24182944 -61512810 - L2 LINE L2 -168 3145 2530 229 276 79 39 chr15 24183094 24183221 -61512533 + MIR SINE MIR 77 208 -54 32 0 0 0 chr15 24184495 24184527 -61511227 + AT_rich Low_complexity Low_complexity 1 32 0 2675 233 75 19 chr15 24184527 24185327 -61510427 + L1ME1 LINE L1 5316 6160 -6 247 237 0 0 chr15 24185327 24185386 -61510368 + L1ME1 LINE L1 6101 6159 -7 451 299 55 39 chr15 24185411 24185899 -61509855 + L1ME3A LINE L1 3352 3847 -2299 438 225 56 94 chr15 24185894 24185988 -61509766 + L1MC4 LINE L1 7759 7855 -187 * 2041 134 76 17 chr15 24185988 24186332 -61509422 - THE1B LTR MaLR 0 364 1 438 225 56 94 chr15 24186332 24186504 -61509250 + L1MC4 LINE L1 7855 8015 -27 873 297 92 13 chr15 24186694 24187441 -61508313 + L1ME3A LINE L1 4012 4817 -1329 1421 282 119 28 chr15 24187447 24188576 -61507178 + L1ME3A LINE L1 4931 6170 0 22 35 0 0 chr15 24189616 24189645 -61506109 + AT_rich Low_complexity Low_complexity 1 29 0 198 263 26 66 chr15 24189674 24189750 -61506004 + L2 LINE L2 511 583 -2731 338 279 76 63 chr15 24189981 24190218 -61505536 - L1 LINE L1 -3692 2454 2215 416 319 92 35 chr15 24190284 24190685 -61505069 - LTR33 LTR ERVL -67 454 31 1805 314 34 11 chr15 24191568 24192179 -61503575 - ERVL LTR ERVL -1084 4680 4056 465 324 51 12 chr15 24192233 24192829 -61502925 - ERVL LTR ERVL -2171 3593 2882 791 118 22 37 chr15 24192886 24193021 -61502733 + FLAM_C SINE Alu 1 133 0 611 312 36 25 chr15 24193058 24193486 -61502268 - LTR33 LTR ERVL -57 464 1 21 0 0 0 chr15 24195661 24195682 -61500072 + AT_rich Low_complexity Low_complexity 1 21 0 613 328 98 25 chr15 24195961 24196357 -61499397 + L3 LINE CR1 1152 1576 -1 358 300 55 82 chr15 24196446 24196666 -61499088 + MIR SINE MIR 3 216 -46 330 345 70 48 chr15 24197135 24198126 -61497628 + L1MEc LINE L1 22 1033 -5363 * 510 316 26 16 chr15 24198117 24198427 -61497327 + L1MEc LINE L1 1445 1757 -4639 * 811 136 44 2 chr15 24198401 24198557 -61497197 - L1P LINE L1 -2033 4113 3938 321 216 10 39 chr15 24199059 24199161 -61496593 + L1ME2 LINE L1 5710 5808 -356 814 236 93 23 chr15 24199177 24199435 -61496319 + L1ME2 LINE L1 5888 6163 -1 1807 238 47 60 chr15 24199678 24200312 -61495442 + MLT1E2 LTR MaLR 1 626 0 1346 158 132 35 chr15 24200442 24200784 -61494970 - THE1C LTR MaLR 0 375 1 391 335 158 5 chr15 24202342 24202545 -61493209 - MIR SINE MIR -4 258 25 1057 209 20 43 chr15 24202790 24203044 -61492710 + MER96B DNA MER1_type? 1 248 -169 21 0 0 0 chr15 24203318 24203339 -61492415 + AT_rich Low_complexity Low_complexity 1 21 0 338 399 33 0 chr15 24203986 24204199 -61491555 + HAL1b LINE L1 714 933 -415 1633 164 48 56 chr15 24204789 24204970 -61490784 + THE1C LTR MaLR 1 182 -193 1868 140 7 4 chr15 24204970 24205299 -61490455 + AluSx SINE Alu 7 336 0 1633 164 48 56 chr15 24205299 24205494 -61490260 + THE1C LTR MaLR 182 375 0 1456 158 0 4 chr15 24205581 24205821 -61489933 - Tigger5 DNA MER2_type 0 2323 2085 363 191 0 16 chr15 24205842 24205905 -61489849 - Tigger5 DNA MER2_type -2261 62 1 218 259 0 0 chr15 24205953 24206007 -61489747 + GA-rich Low_complexity Low_complexity 1 54 0 341 248 86 50 chr15 24206100 24206298 -61489456 + L1ME3A LINE L1 4132 4336 -1810 293 299 0 0 chr15 24206357 24206424 -61489330 - MER96B DNA MER1_type? -107 68 2 505 321 6 0 chr15 24206437 24206602 -61489152 + L1ME3A LINE L1 5401 5566 -596 242 259 0 0 chr15 24206607 24206661 -61489093 + L1ME3A LINE L1 5664 5717 -453 450 216 29 0 chr15 24206696 24206798 -61488956 + L1ME3A LINE L1 5797 5901 -269 1376 223 117 45 chr15 24206799 24207166 -61488588 - MLT1D LTR MaLR 0 505 95 2250 96 3 10 chr15 24207166 24207479 -61488275 - AluSx SINE Alu -1 311 1 1376 223 117 45 chr15 24207479 24207582 -61488172 - MLT1D LTR MaLR -410 95 1 241 143 179 48 chr15 24208117 24208201 -61487553 - L1ME4a LINE L1 -41 6080 5986 * 256 191 113 52 chr15 24208177 24208292 -61487462 + HAL1b LINE L1 1225 1346 -2 248 254 30 130 chr15 24208360 24208529 -61487225 - MIR SINE MIR -12 250 99 238 50 50 0 chr15 24210974 24211014 -61484740 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 211 351 52 30 chr15 24211235 24211369 -61484385 - MIR SINE MIR -45 217 81 405 198 12 0 chr15 24211415 24211496 -61484258 + MER94 DNA DNA 4 85 -49 323 298 63 24 chr15 24211664 24211869 -61483885 - L1ME4a LINE L1 -175 5946 5734 1286 211 45 23 chr15 24212105 24212413 -61483341 - MLT1A2 LTR MaLR 0 374 60 342 276 113 43 chr15 24212517 24212702 -61483052 - L1ME4a LINE L1 -2272 3874 3677 29 70 0 0 chr15 24214251 24214308 -61481446 + AT_rich Low_complexity Low_complexity 1 57 0 1127 137 168 0 chr15 24215043 24215269 -61480485 + MER21A LTR ERV1 1 264 -667 2866 134 79 28 chr15 24215274 24215803 -61479951 + MER21A LTR ERV1 376 931 0 1353 188 8 13 chr15 24217095 24217334 -61478420 + MER41D LTR ERV1 320 557 0 1971 311 172 14 chr15 24217339 24217951 -61477803 - HAL1 LINE L1 -364 2143 1629 423 0 0 0 chr15 24217951 24217998 -61477756 + (TG)n Simple_repeat Simple_repeat 2 48 0 1971 311 172 14 chr15 24217998 24219122 -61476632 - HAL1 LINE L1 -878 1629 134 2020 128 0 30 chr15 24219851 24220156 -61475598 + AluSx SINE Alu 1 296 -16 1712 132 147 24 chr15 24221621 24221955 -61473799 + THE1C LTR MaLR 1 375 0 2236 74 10 17 chr15 24223122 24223419 -61472335 - AluY SINE Alu -16 295 1 1918 133 3 20 chr15 24223685 24223986 -61471768 + AluSx SINE Alu 1 296 -16 548 250 71 35 chr15 24224512 24224830 -61470924 - L1MC4 LINE L1 -733 7228 6930 21 0 0 0 chr15 24224834 24224855 -61470899 + AT_rich Low_complexity Low_complexity 1 21 0 659 312 52 55 chr15 24224941 24225306 -61470448 + L1MB1 LINE L1 5 368 -5523 452 328 42 51 chr15 24225368 24225753 -61470001 + L1MB1 LINE L1 193 513 -5378 665 313 4 8 chr15 24225923 24226169 -61469585 + L1MB1 LINE L1 666 910 -4991 9412 208 35 23 chr15 24226184 24228264 -61467490 + L1MB1 LINE L1 2531 4671 -1321 1787 132 4 4 chr15 24228264 24228530 -61467224 + AluSx SINE Alu 39 304 -8 9412 208 35 23 chr15 24228530 24229856 -61465898 + L1MB1 LINE L1 4671 5979 -13 1030 324 77 20 chr15 24229864 24230467 -61465287 - L2 LINE L2 -90 3223 2574 1233 242 36 15 chr15 24232112 24232443 -61463311 + MLT1A1 LTR MaLR 26 363 -2 400 127 0 32 chr15 24233008 24233071 -61462683 - AluJo SINE Alu -17 295 235 360 230 0 0 chr15 24233071 24233145 -61462609 - MER52A LTR ERV1 0 1755 1682 * 3690 187 114 88 chr15 24233135 24234276 -61461478 - MER52A LTR ERV1 -559 1196 25 1148 232 4 8 chr15 24234281 24234522 -61461232 - AluJo SINE Alu -72 240 1 1527 167 54 70 chr15 24235563 24235650 -61460104 + MLT1A1 LTR MaLR 1 88 -277 2191 115 0 0 chr15 24235650 24235965 -61459789 + AluSg SINE Alu 3 317 0 1527 167 54 70 chr15 24235965 24236247 -61459507 + MLT1A1 LTR MaLR 88 365 0 25 31 0 0 chr15 24236964 24236996 -61458758 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chr15 24238492 24238525 -61457229 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr15 24239403 24239426 -61456328 + AT_rich Low_complexity Low_complexity 1 23 0 1515 199 0 27 chr15 24239708 24240004 -61455750 - AluJo SINE Alu -22 290 3 196 260 20 0 chr15 24240284 24240334 -61455420 + L2 LINE L2 3217 3267 -5 277 323 46 36 chr15 24240519 24240714 -61455040 - L2 LINE L2 0 3313 3117 1966 156 11 11 chr15 24241090 24241437 -61454317 - MER7A DNA MER2_type -1 345 1 8541 99 28 11 chr15 24242489 24243292 -61452462 - L1PA8 LINE L1 0 6172 5384 2186 116 0 7 chr15 24243292 24243595 -61452159 - AluSq SINE Alu -12 301 1 8541 99 28 11 chr15 24243595 24244886 -61450868 - L1PA8 LINE L1 -788 5384 4044 1229 197 197 0 chr15 24246011 24246396 -61449358 + Charlie1b DNA MER1_type 56 516 -7 1135 225 14 5 chr15 24246501 24246723 -61449031 - MER58A DNA MER1_type 0 224 1 435 68 0 0 chr15 24246767 24246826 -61448928 + (TG)n Simple_repeat Simple_repeat 1 59 0 277 351 32 44 chr15 24246860 24247108 -61448646 - MIR SINE MIR -6 256 12 215 261 118 98 chr15 24247180 24247333 -61448421 - MIR SINE MIR -56 206 51 670 211 42 66 chr15 24249162 24249375 -61446379 + L1ME3 LINE L1 5857 6064 -98 285 285 131 36 chr15 24249436 24249573 -61446181 - MER5A DNA MER1_type -30 159 10 21 71 0 0 chr15 24250107 24250149 -61445605 + AT_rich Low_complexity Low_complexity 1 42 0 24 53 0 0 chr15 24250374 24250412 -61445342 + AT_rich Low_complexity Low_complexity 1 38 0 6834 139 4 10 chr15 24250416 24251990 -61443764 - L1MA2 LINE L1 0 6304 4738 2181 68 0 44 chr15 24251998 24252339 -61443415 - AluY SINE Alu 0 328 1 2501 170 10 5 chr15 24252513 24252925 -61442829 + L1M4c LINE L1 19 432 -5952 4060 27 4 0 chr15 24252935 24253414 -61442340 - L1PA3 LINE L1 -1 6154 5674 706 153 7 35 chr15 24253414 24253558 -61442196 - L1M4c LINE L1 -5829 555 416 244 59 0 0 chr15 24253556 24253590 -61442164 - L1P1 LINE L1 -488 5667 5634 * 4696 191 41 26 chr15 24253644 24254741 -61441013 + L1M4c LINE L1 416 1528 -4856 465 252 0 0 chr15 24254738 24254865 -61440889 + L1P LINE L1 3367 3493 -2653 * 4333 202 19 1 chr15 24254861 24255777 -61439977 + L1 LINE L1 3414 4345 -1801 2161 126 0 0 chr15 24255789 24256082 -61439672 + AluSx SINE Alu 3 295 -17 6534 240 40 14 chr15 24256101 24258244 -61437510 - L1 LINE L1 -2016 5549 3356 313 220 0 49 chr15 24258258 24258361 -61437393 - L1 LINE L1 -4157 3409 3039 1114 186 5 9 chr15 24258368 24258589 -61437165 - Tigger5 DNA MER2_type 0 2323 2104 17319 176 50 17 chr15 24258589 24264233 -61431521 - L1M4 LINE L1 -942 6623 642 1408 139 15 0 chr15 24264233 24264434 -61431320 - AluSg SINE Alu -106 204 1 300 186 26 88 chr15 24264440 24264553 -61431201 - L1M4 LINE L1 -7457 108 3 * 962 276 31 19 chr15 24264552 24264874 -61430880 + L1MEc LINE L1 265 590 -5806 1037 295 108 29 chr15 24264897 24265749 -61430005 + L1MEc LINE L1 1133 2051 -4345 5704 75 26 51 chr15 24265788 24266676 -61429078 + SVA Other Other 1 866 -520 2670 145 13 38 chr15 24266693 24267294 -61428460 + SVA Other Other 549 1134 -252 979 204 42 21 chr15 24270307 24270592 -61425162 + L1MA5 LINE L1 6000 6290 -10 543 274 156 4 chr15 24270622 24270892 -61424862 - Charlie2 DNA MER1_type -687 2175 1865 720 267 42 59 chr15 24270898 24271205 -61424549 - Charlie2 DNA MER1_type -2480 302 1 1325 219 84 13 chr15 24271443 24271754 -61424000 + L1MCa LINE L1 7 339 -6087 276 208 271 0 chr15 24271816 24271912 -61423842 + L1 LINE L1 1238 1359 -4998 1158 215 14 24 chr15 24272046 24272339 -61423415 + L1 LINE L1 6334 6623 -942 1046 199 5 9 chr15 24272339 24272560 -61423194 + Tigger5 DNA MER2_type 2104 2323 0 313 220 0 49 chr15 24272567 24272670 -61423084 + L1M3b LINE L1 3039 3409 -4157 3512 179 21 13 chr15 24272884 24274002 -61421752 - L1MB1 LINE L1 -227 5941 4815 623 264 6 6 chr15 24274018 24274181 -61421573 - AluSg/x SINE Alu -29 283 121 6381 75 16 45 chr15 24274308 24275461 -61420293 + SVA Other Other 433 1386 0 207 0 0 0 chr15 24275486 24275509 -61420245 + (A)n Simple_repeat Simple_repeat 1 23 0 1165 262 50 14 chr15 24275566 24276119 -61419635 + L1MCa LINE L1 2250 2782 -3644 251 291 18 18 chr15 24276185 24276295 -61419459 - MER4E LTR ERV1 -39 740 631 21 0 0 0 chr15 24276340 24276361 -61419393 + AT_rich Low_complexity Low_complexity 1 21 0 186 103 0 0 chr15 24278974 24279003 -61416751 + (TG)n Simple_repeat Simple_repeat 2 30 0 572 333 52 13 chr15 24280783 24281014 -61414740 + MIR SINE MIR 23 262 0 284 219 208 0 chr15 24281048 24281144 -61414610 - L1ME1 LINE L1 -26 6140 6025 248 408 41 10 chr15 24281144 24281340 -61414414 - MIR3 SINE MIR -2 206 5 1276 242 149 48 chr15 24282020 24282630 -61413124 - Charlie2 DNA MER1_type -1 2861 2128 1978 136 60 8 chr15 24282630 24282999 -61412755 + L1MA5 LINE L1 5908 6295 -5 1276 242 149 48 chr15 24282999 24283293 -61412461 - Charlie2 DNA MER1_type -734 2128 1865 766 268 41 57 chr15 24283289 24283606 -61412148 - Charlie2 DNA MER1_type -2470 312 1 * 1325 219 84 13 chr15 24283844 24284155 -61411599 + L1MCa LINE L1 7 339 -6087 1680 249 54 18 chr15 24284217 24285340 -61410414 + L1MA7 LINE L1 2340 3392 -4174 6258 230 62 14 chr15 24285400 24287461 -61408293 + L1MA7 LINE L1 3313 5606 -1959 2524 194 27 11 chr15 24287471 24288029 -61407725 + L1MA7 LINE L1 6042 6608 -957 318 203 0 0 chr15 24288029 24288088 -61407666 + L1MA7 LINE L1 7269 7327 -383 418 137 0 84 chr15 24288093 24288188 -61407566 - L1M2 LINE L1 -827 5464 5378 5250 240 42 20 chr15 24288230 24289803 -61405951 + L1M4 LINE L1 3627 5234 -912 544 250 40 28 chr15 24289815 24290095 -61405659 + L1MCa LINE L1 1266 1676 -4868 5325 163 50 15 chr15 24290312 24291413 -61404341 + L1MC1 LINE L1 6605 7737 -15 24 0 0 0 chr15 24291813 24291837 -61403917 + AT_rich Low_complexity Low_complexity 1 24 0 1962 158 90 20 chr15 24291861 24292260 -61403494 - MSTA LTR MaLR -1 427 1 23 33 0 0 chr15 24293637 24293667 -61402087 + AT_rich Low_complexity Low_complexity 1 30 0 216 97 0 0 chr15 24294491 24294522 -61401232 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 583 216 182 0 chr15 24294658 24294806 -61400948 - MER69A DNA AcHobo -2 175 1 480 261 121 25 chr15 24294838 24294995 -61400759 + MIR SINE MIR 85 256 -6 2440 64 0 6 chr15 24296286 24296599 -61399155 + AluY SINE Alu 1 311 0 194 342 70 63 chr15 24296639 24296797 -61398957 - L2 LINE L2 -601 2713 2555 36 53 0 0 chr15 24297247 24297304 -61398450 + AT_rich Low_complexity Low_complexity 1 57 0 466 257 173 18 chr15 24297545 24297771 -61397983 - L1ME3A LINE L1 -244 5926 5666 196 227 0 0 chr15 24299155 24299199 -61396555 + L2 LINE L2 3270 3313 0 183 42 0 0 chr15 24299679 24299703 -61396051 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 311 379 42 25 chr15 24299879 24300119 -61395635 - L2 LINE L2 -211 3061 2818 1742 245 40 30 chr15 24301372 24301726 -61394028 + L1M4 LINE L1 4017 4383 -1763 2031 111 0 7 chr15 24301726 24302006 -61393748 + AluSg SINE Alu 16 293 -17 1742 245 40 30 chr15 24302006 24302295 -61393459 + L1M4 LINE L1 4383 4667 -1479 1257 104 0 16 chr15 24302284 24302466 -61393288 - THE1-int LTR MaLR -164 1416 1238 * 1494 256 23 2 chr15 24302476 24302917 -61392837 + L1M4 LINE L1 4660 5109 -1037 1062 118 43 0 chr15 24302983 24303144 -61392610 - THE1C LTR MaLR 0 375 208 2538 117 0 3 chr15 24303146 24303489 -61392265 + THE1C LTR MaLR 34 375 0 940 246 0 0 chr15 24303489 24303692 -61392062 + L1PA16 LINE L1 5962 6164 -2 244 318 125 0 chr15 24303960 24304048 -61391706 + L2 LINE L2 3143 3241 -31 672 227 31 49 chr15 24304085 24304310 -61391444 - MER65B LTR ERV1 -129 402 182 22 70 0 0 chr15 24304734 24304777 -61390977 + AT_rich Low_complexity Low_complexity 1 43 0 335 240 123 39 chr15 24305250 24305429 -61390325 - L1ME4a LINE L1 -1 6120 5927 317 325 58 37 chr15 24305432 24305623 -61390131 - L1ME3A LINE L1 -563 5558 5364 42843 35 21 1 chr15 24306770 24312798 -61382956 + L1PA2 LINE L1 1 6150 -5 34 42 0 0 chr15 24312815 24312863 -61382891 + AT_rich Low_complexity Low_complexity 1 48 0 1444 211 63 0 chr15 24313002 24313305 -61382449 - L1MC1 LINE L1 -23 6310 5989 279 303 174 8 chr15 24314067 24314199 -61381555 - L2 LINE L2 0 3313 3160 186 200 0 0 chr15 24314469 24314499 -61381255 - L3 LINE CR1 -23 1554 1525 312 287 33 16 chr15 24314499 24314621 -61381133 - MER117 DNA MER1_type 0 197 74 1042 287 50 67 chr15 24315135 24315514 -61380240 - L2 LINE L2 0 3313 2942 2250 87 0 3 chr15 24315514 24315800 -61379954 - AluSc SINE Alu -24 285 1 1042 287 50 67 chr15 24315800 24315915 -61379839 - L2 LINE L2 -371 2942 2827 2834 10 0 0 chr15 24316016 24316325 -61379429 - AluYa5 SINE Alu -2 309 1 556 281 49 30 chr15 24317338 24317541 -61378213 + MIR SINE MIR 53 259 -3 1628 168 7 105 chr15 24317882 24318292 -61377462 - MLT1A2 LTR MaLR 0 374 5 556 287 112 45 chr15 24318484 24318798 -61376956 + MLT1H LTR MaLR 210 544 -5 772 282 115 42 chr15 24319048 24319449 -61376305 - MLT1J LTR MaLR 0 511 82 355 196 15 75 chr15 24319785 24319918 -61375836 - L1MC5 LINE L1 -83 7878 7754 186 43 0 0 chr15 24321064 24321087 -61374667 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 495 158 9 70 chr15 24321808 24321922 -61373832 + MER53 DNA DNA 1 107 -82 820 168 25 6 chr15 24322280 24322441 -61373313 - L1MB1 LINE L1 -1 6167 6004 23 33 0 0 chr15 24322500 24322530 -61373224 + AT_rich Low_complexity Low_complexity 1 30 0 1944 203 84 36 chr15 24322848 24323322 -61372432 - MLT1D LTR MaLR -8 497 1 585 254 180 0 chr15 24323730 24323919 -61371835 + MIR SINE MIR 5 227 -35 211 380 0 0 chr15 24324588 24324667 -61371087 - L2 LINE L2 -3 3310 3232 22 0 0 0 chr15 24325794 24325816 -61369938 + GC_rich Low_complexity Low_complexity 1 22 0 399 234 21 0 chr15 24327209 24327354 -61368400 + (TA)n Simple_repeat Simple_repeat 1 148 0 272 238 16 0 chr15 24330389 24330452 -61365302 + CT-rich Low_complexity Low_complexity 1 64 0 1335 220 0 14 chr15 24332135 24332421 -61363333 + AluJb SINE Alu 5 286 -26 1036 284 150 0 chr15 24333225 24333559 -61362195 + L2 LINE L2 1117 1500 -1814 304 313 78 35 chr15 24333565 24333795 -61361959 + L1ME LINE L1 5523 5762 -359 395 361 61 0 chr15 24334141 24334321 -61361433 + L2 LINE L2 2476 2666 -648 642 257 76 0 chr15 24334342 24334513 -61361241 + MIR SINE MIR 5 188 -74 1285 154 31 18 chr15 24334513 24334740 -61361014 + MER46A DNA MER2_type 6 235 -1 261 341 16 23 chr15 24334766 24334895 -61360859 + L2 LINE L2 2709 2836 -478 212 0 36 0 chr15 24334894 24334922 -61360832 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 * 539 313 84 43 chr15 24334930 24335301 -61360453 + L2 LINE L2 2921 3306 -7 540 81 0 0 chr15 24335307 24335381 -61360373 + (TGGA)n Simple_repeat Simple_repeat 1 74 0 202 348 45 9 chr15 24336678 24336790 -61358964 - MIR SINE MIR -51 211 96 497 163 0 11 chr15 24339253 24339345 -61356409 - L1MA8 LINE L1 -426 5874 5784 1801 146 60 3 chr15 24339345 24339706 -61356048 + L1MA8 LINE L1 5904 6288 -3 376 335 72 31 chr15 24341074 24341268 -61354486 - MIR SINE MIR -3 259 58 21 0 0 0 chr15 24341659 24341680 -61354074 + AT_rich Low_complexity Low_complexity 1 21 0 2257 149 82 9 chr15 24342813 24343332 -61352422 + LTR35 LTR ERV1 1 618 0 4306 148 11 13 chr15 24343366 24344078 -61351676 + MER50 LTR ERV1 1 711 -23 1566 164 164 31 chr15 24344388 24344777 -61350977 + LTR48 LTR ERV1 3 443 -344 695 149 49 26 chr15 24344792 24345006 -61350748 + LTR48 LTR ERV1 550 707 0 324 271 167 31 chr15 24345868 24346060 -61349694 + MIR SINE MIR 41 258 -4 205 244 0 0 chr15 24346210 24346251 -61349503 - L2 LINE L2 -19 3294 3254 23 0 0 0 chr15 24346794 24346817 -61348937 + AT_rich Low_complexity Low_complexity 1 23 0 31 26 0 0 chr15 24346977 24347015 -61348739 + AT_rich Low_complexity Low_complexity 1 38 0 333 267 19 38 chr15 24347586 24347691 -61348063 - MIR SINE MIR -66 142 40 199 321 125 30 chr15 24348998 24349166 -61346588 + MER5A DNA MER1_type 3 186 -3 513 0 0 0 chr15 24349238 24349295 -61346459 + (CA)n Simple_repeat Simple_repeat 1 57 0 732 319 12 16 chr15 24349300 24349548 -61346206 + MIR SINE MIR 12 258 -4 245 296 70 49 chr15 24349988 24350130 -61345624 + MIR3 SINE MIR 32 176 -32 367 285 80 0 chr15 24350444 24350595 -61345159 + MER103 DNA DNA 3 165 -1 2168 91 27 3 chr15 24351737 24352033 -61343721 + AluSc SINE Alu 1 303 -6 293 326 42 0 chr15 24352474 24352618 -61343136 - L1MC4a LINE L1 -1894 5914 5765 235 276 13 13 chr15 24354113 24354189 -61341565 + MIR SINE MIR 174 249 -13 376 191 169 74 chr15 24354282 24354471 -61341283 + MER3 DNA MER1_type 2 208 -1 * 903 144 64 43 chr15 24354471 24354519 -61341235 - MER3 DNA MER1_type -157 52 1 416 190 17 69 chr15 24354538 24354654 -61341100 + MER3 DNA MER1_type 100 209 0 22 56 0 0 chr15 24357170 24357206 -61338548 + AT_rich Low_complexity Low_complexity 1 36 0 436 271 41 60 chr15 24357871 24358137 -61337617 + L1MC4a LINE L1 5260 5520 -2288 963 184 48 14 chr15 24358137 24358449 -61337305 + MLT1A1 LTR MaLR 1 365 0 463 284 92 37 chr15 24358458 24358807 -61336947 + L1MC4a LINE L1 5525 5892 -1916 252 0 0 0 chr15 24358810 24358838 -61336916 + (TG)n Simple_repeat Simple_repeat 2 29 0 297 277 21 0 chr15 24358994 24359088 -61336666 + (TA)n Simple_repeat Simple_repeat 1 96 0 306 50 0 0 chr15 24359110 24359150 -61336604 + (CA)n Simple_repeat Simple_repeat 2 41 0 339 25 0 0 chr15 24359327 24359367 -61336387 + (CA)n Simple_repeat Simple_repeat 2 41 0 254 318 36 67 chr15 24359526 24359721 -61336033 + MIR SINE MIR 74 262 0 662 305 33 9 chr15 24360178 24360409 -61335345 - MIR SINE MIR -13 249 18 2155 247 14 43 chr15 24361156 24361711 -61334043 - MLT1H LTR MaLR -2 547 9 902 299 66 28 chr15 24362509 24362931 -61332823 + LTR33 LTR ERVL 30 467 -54 1646 202 50 17 chr15 24363020 24363436 -61332318 + Charlie4a DNA MER1_type 46 475 -33 312 143 0 0 chr15 24363462 24363518 -61332236 + (CA)n Simple_repeat Simple_repeat 1 56 0 225 296 182 30 chr15 24364220 24364352 -61331402 + L2 LINE L2 3121 3272 0 1229 27 0 0 chr15 24365483 24365631 -61330123 + L1PA2 LINE L1 6008 6155 0 35 0 0 0 chr15 24365631 24365666 -61330088 + AT_rich Low_complexity Low_complexity 1 35 0 661 255 6 35 chr15 24365828 24366011 -61329743 - MIR SINE MIR 0 262 88 292 156 0 0 chr15 24366104 24366149 -61329605 + L2 LINE L2 3267 3311 -2 2006 145 15 38 chr15 24366657 24366981 -61328773 - L1MC/D LINE L1 -716 5617 5301 2193 101 7 7 chr15 24366981 24367289 -61328465 - AluSq SINE Alu -3 310 3 2006 145 15 38 chr15 24367289 24367366 -61328388 - L1MC/D LINE L1 -1032 5301 5224 2027 211 67 2 chr15 24367409 24367845 -61327909 + MLT1C LTR MaLR 4 467 0 697 98 30 37 chr15 24368867 24369031 -61326723 + CT-rich Low_complexity Low_complexity 4 166 0 276 130 0 0 chr15 24369031 24369077 -61326677 + (CA)n Simple_repeat Simple_repeat 1 46 0 209 171 76 32 chr15 24369314 24369472 -61326282 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 * 436 190 46 11 chr15 24369354 24369528 -61326226 + (TA)n Simple_repeat Simple_repeat 1 180 0 243 0 0 0 chr15 24369549 24369599 -61326155 + (CA)n Simple_repeat Simple_repeat 1 77 0 243 0 0 0 chr15 24369599 24369626 -61326128 + (CA)n Simple_repeat Simple_repeat 2 28 0 259 179 77 39 chr15 24370345 24370423 -61325331 + L2 LINE L2 3190 3270 -2 245 293 37 0 chr15 24370434 24370516 -61325238 - MIR3 SINE MIR -9 199 115 736 187 44 16 chr15 24371352 24371534 -61324220 - MER53 DNA DNA -2 187 1 755 171 30 80 chr15 24372097 24372296 -61323458 + MER5A DNA MER1_type 1 189 0 182 208 19 0 chr15 24372543 24372596 -61323158 + CT-rich Low_complexity Low_complexity 2 55 0 4774 219 25 43 chr15 24373298 24373988 -61321766 - L1MB5 LINE L1 -9 6165 5464 270 0 0 0 chr15 24373988 24374018 -61321736 + (TG)n Simple_repeat Simple_repeat 2 31 0 4774 219 25 43 chr15 24374018 24375479 -61320275 - L1MB5 LINE L1 -710 5464 4051 1092 223 8 20 chr15 24375495 24375746 -61320008 + L1M4 LINE L1 494 741 -5801 29 0 0 0 chr15 24375781 24375810 -61319944 + AT_rich Low_complexity Low_complexity 1 29 0 5873 144 23 4 chr15 24375813 24377249 -61318505 - L1PB3 LINE L1 -5 6149 4686 938 293 98 39 chr15 24377259 24377699 -61318055 - L1M4 LINE L1 -6072 470 5 5842 164 4 11 chr15 24377967 24378823 -61316931 - L1P4 LINE L1 -705 5458 4611 1922 149 65 14 chr15 24378823 24379178 -61316576 + THE1C LTR MaLR 1 373 -2 5842 164 4 11 chr15 24379178 24379489 -61316265 - L1P4 LINE L1 -1552 4611 4299 1971 196 43 37 chr15 24379484 24379973 -61315781 + L1MB8 LINE L1 5686 6177 -1 * 246 336 31 39 chr15 24380161 24380289 -61315465 - L2 LINE L2 -29 3284 3158 4740 208 81 52 chr15 24380361 24382643 -61313111 + L1MDb LINE L1 28 2448 -3958 2340 189 6 73 chr15 24382643 24383193 -61312561 - MLT2B2 LTR ERVL 0 515 3 4740 208 81 52 chr15 24383193 24384119 -61311635 + L1MDb LINE L1 2448 3346 -3060 2157 97 0 0 chr15 24384219 24384488 -61311266 - AluSg SINE Alu -41 269 1 2403 251 39 42 chr15 24384488 24385551 -61310203 + L1M4 LINE L1 3020 5315 -831 3018 121 17 0 chr15 24385651 24386115 -61309639 + L1PA13 LINE L1 5673 6144 -19 845 231 19 10 chr15 24386135 24386343 -61309411 - L1M4 LINE L1 -487 6502 6293 2681 245 22 25 chr15 24386375 24387162 -61308592 - L1M4 LINE L1 -1992 4965 4182 * 5149 259 57 43 chr15 24387157 24388799 -61306955 - L1M4 LINE L1 -5189 1670 6 889 289 78 39 chr15 24388798 24389366 -61306388 - HAL1b LINE L1 -650 698 109 * 542 285 146 0 chr15 24389763 24389921 -61305833 + MER5A DNA MER1_type 9 189 0 454 248 241 0 chr15 24389921 24390058 -61305696 - MER5B DNA MER1_type -8 170 1 190 378 0 22 chr15 24390723 24390813 -61304941 - L3 LINE CR1 -557 1020 933 220 234 0 0 chr15 24391304 24391351 -61304403 + T-rich Low_complexity Low_complexity 4 50 0 231 286 0 0 chr15 24391708 24391771 -61303983 - L1M4 LINE L1 -1549 4597 4535 275 130 48 75 chr15 24391847 24391993 -61303761 + (TTATA)n Simple_repeat Simple_repeat 5 146 0 * 278 154 77 0 chr15 24391904 24391995 -61303759 + (TA)n Simple_repeat Simple_repeat 2 99 0 990 243 68 14 chr15 24391995 24392361 -61303393 - L1M4 LINE L1 -1733 4413 4028 1564 123 0 5 chr15 24392486 24392705 -61303049 + AluSq SINE Alu 1 218 -95 545 212 49 66 chr15 24392945 24393275 -61302479 - MER92C LTR ERV1 0 554 1 329 156 13 13 chr15 24393900 24393977 -61301777 - MER31-int LTR ERV1 -489 4447 4371 576 199 141 34 chr15 24394044 24394250 -61301504 - LTR37A LTR ERV1 -198 228 1 1387 226 24 57 chr15 24394251 24394372 -61301382 - MER31-int LTR ERV1 -687 4249 4126 942 118 0 157 chr15 24394372 24394601 -61301153 + 7SK RNA RNA 1 193 0 1387 226 24 57 chr15 24394601 24394850 -61300904 - MER31-int LTR ERV1 -810 4126 3891 298 358 136 6 chr15 24398379 24398541 -61297213 + L2 LINE L2 3085 3267 -5 3259 135 7 30 chr15 24398851 24399390 -61296364 + MER1A DNA MER1_type 1 527 0 182 278 0 19 chr15 24399405 24399459 -61296295 + MER5B DNA MER1_type 123 175 -3 362 284 128 14 chr15 24399571 24399719 -61296035 + MIR SINE MIR 61 225 -37 242 296 169 14 chr15 24399778 24399920 -61295834 + MIR SINE MIR 99 262 0 263 345 109 0 chr15 24400227 24400346 -61295408 + MIR SINE MIR 93 224 -38 188 356 40 20 chr15 24400898 24400999 -61294755 - MIR SINE MIR -111 151 49 197 119 24 0 chr15 24401307 24401349 -61294405 + T-rich Low_complexity Low_complexity 2 44 0 373 313 50 31 chr15 24401872 24402091 -61293663 + MIR SINE MIR 20 246 -16 480 78 0 0 chr15 24402111 24402175 -61293579 - MADE1 DNA Mariner -4 76 13 23 33 0 0 chr15 24402607 24402637 -61293117 + AT_rich Low_complexity Low_complexity 1 30 0 728 250 70 29 chr15 24403735 24403979 -61291775 - L2 LINE L2 0 3313 3060 355 280 66 41 chr15 24404108 24404306 -61291448 + MIR SINE MIR 5 214 -48 656 288 28 28 chr15 24404343 24404555 -61291199 - MIR SINE MIR -38 224 13 4203 126 42 6 chr15 24404598 24405272 -61290482 - L1PA16 LINE L1 -10 6156 5459 259 314 77 52 chr15 24406004 24406329 -61289425 - LTR33 LTR ERVL -6 515 183 * 1505 205 99 48 chr15 24406327 24406741 -61289013 - MLT1D LTR MaLR -68 437 3 2096 120 0 0 chr15 24408845 24409160 -61286594 + AluSx SINE Alu 1 315 0 276 232 12 49 chr15 24409233 24409315 -61286439 - L2 LINE L2 -1 3312 3234 540 158 0 0 chr15 24410228 24410323 -61285431 + GA-rich Low_complexity Low_complexity 2 96 0 281 30 0 0 chr15 24410340 24410373 -61285381 + (GAAA)n Simple_repeat Simple_repeat 3 35 0 272 274 305 26 chr15 24411101 24411327 -61284427 - L3 LINE CR1 -50 1527 1239 857 175 6 62 chr15 24411601 24411807 -61283947 - L1M1 LINE L1 -797 5506 5318 2650 7 0 7 chr15 24411807 24412099 -61283655 - AluY SINE Alu -4 307 18 857 175 6 62 chr15 24412099 24412146 -61283608 - L1M1 LINE L1 -985 5318 5270 4917 172 17 6 chr15 24412157 24413048 -61282706 - L1MA6 LINE L1 0 6300 5400 6753 167 25 62 chr15 24413112 24414648 -61281106 - L1MA6 LINE L1 -847 5299 3820 13435 142 14 17 chr15 24415386 24417637 -61278117 + Tigger1 DNA MER2_type 2 2246 -172 392 0 0 20 chr15 24417637 24417686 -61278068 + (TTA)n Simple_repeat Simple_repeat 3 50 0 7624 29 0 0 chr15 24417686 24421719 -61274035 - L1PA3 LINE L1 -18 6137 2017 642 254 48 0 chr15 24421719 24421884 -61273870 + Tigger1 DNA MER2_type 2244 2416 -2 291 315 91 21 chr15 24421937 24422080 -61273674 - MIR SINE MIR -108 154 2 984 277 30 22 chr15 24422274 24422639 -61273115 - L1ME3A LINE L1 -168 6002 5635 192 297 0 79 chr15 24424431 24424532 -61271222 + MIR3 SINE MIR 111 203 -5 222 105 0 0 chr15 24425290 24425328 -61270426 + (TC)n Simple_repeat Simple_repeat 2 39 0 1473 167 107 29 chr15 24426362 24426746 -61269008 - Charlie1 DNA MER1_type -5 2756 2343 227 380 0 0 chr15 24426744 24426815 -61268939 - Charlie1 DNA MER1_type -2690 71 1 * 537 245 38 10 chr15 24427238 24427411 -61268343 + MLT1I LTR MaLR 267 409 0 1824 169 86 51 chr15 24427839 24428248 -61267506 - MSTB LTR MaLR -3 423 1 456 307 40 7 chr15 24428463 24428613 -61267141 - MIR SINE MIR -71 191 37 189 222 0 0 chr15 24428661 24428724 -61267030 + (TGAA)n Simple_repeat Simple_repeat 1 63 0 2241 103 0 0 chr15 24429187 24429478 -61266276 + AluSg SINE Alu 18 308 -2 231 280 8 17 chr15 24430588 24430706 -61265048 + (TA)n Simple_repeat Simple_repeat 2 118 0 204 211 0 19 chr15 24431886 24431938 -61263816 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 1937 128 43 0 chr15 24434297 24434578 -61261176 - AluSg SINE Alu -17 293 1 30 0 0 0 chr15 24437234 24437264 -61258490 + AT_rich Low_complexity Low_complexity 1 30 0 585 326 141 18 chr15 24437598 24438151 -61257603 - L2 LINE L2 0 3313 2688 442 312 70 5 chr15 24438911 24439097 -61256657 - MIR SINE MIR 0 262 65 201 308 0 0 chr15 24440436 24440488 -61255266 - L2 LINE L2 -15 3257 3206 215 355 109 0 chr15 24441178 24441288 -61254466 + MIR3 SINE MIR 87 208 0 249 240 0 0 chr15 24442172 24442222 -61253532 - MIR SINE MIR -131 131 82 1480 195 58 72 chr15 24442485 24442988 -61252766 + MLT1D LTR MaLR 1 496 -9 826 318 123 17 chr15 24443405 24443754 -61252000 + L2 LINE L2 2927 3312 -1 1847 105 112 14 chr15 24444237 24444522 -61251232 + AluSq SINE Alu 1 313 0 503 291 0 28 chr15 24445118 24445259 -61250495 + MER5A DNA MER1_type 43 179 -10 2298 105 0 10 chr15 24446034 24446340 -61249414 - AluSc SINE Alu -6 303 1 2086 129 24 0 chr15 24446497 24446791 -61248963 + AluSx SINE Alu 1 301 -11 736 186 114 48 chr15 24447073 24447283 -61248471 + MIR SINE MIR 39 262 0 403 274 147 71 chr15 24448273 24448470 -61247284 + MIR SINE MIR 41 252 -10 364 229 60 0 chr15 24449121 24449202 -61246552 - MER47A DNA MER2_type 0 366 281 2191 180 23 16 chr15 24449202 24449629 -61246125 + Tigger7 DNA MER2_type 1 430 -303 325 215 28 93 chr15 24449624 24449731 -61246023 + Tigger7 DNA MER2_type 2388 2487 0 * 1677 129 14 4 chr15 24449731 24450010 -61245744 - MER47A DNA MER2_type -84 282 1 235 267 109 20 chr15 24450721 24450822 -61244932 - MIR SINE MIR -70 192 83 874 206 69 45 chr15 24452665 24452994 -61242760 - MER33 DNA MER1_type 0 324 1 6356 191 26 45 chr15 24453013 24453614 -61242140 - L1MC1 LINE L1 0 6613 6002 183 80 0 0 chr15 24453614 24453639 -61242115 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1322 211 25 21 chr15 24453641 24453921 -61241833 - AluJo SINE Alu -31 281 1 6356 191 26 45 chr15 24453921 24454374 -61241380 - L1MC1 LINE L1 -612 6001 5541 2793 13 0 0 chr15 24454374 24454679 -61241075 + AluYa5 SINE Alu 1 305 -6 6356 191 26 45 chr15 24454679 24454911 -61240843 - L1MC1 LINE L1 -1072 5541 5306 2573 58 0 3 chr15 24454911 24455223 -61240531 - AluY SINE Alu 0 311 1 6356 191 26 45 chr15 24455223 24456151 -61239603 - L1MC1 LINE L1 -1307 5306 4472 2228 111 3 0 chr15 24456151 24456449 -61239305 - AluSx SINE Alu -13 299 1 6356 191 26 45 chr15 24456449 24457436 -61238318 - L1MC1 LINE L1 -2141 4472 3467 1731 162 51 11 chr15 24457438 24458099 -61237655 - L1MC1 LINE L1 -4457 1969 1194 23 33 0 0 chr15 24458194 24458224 -61237530 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr15 24458298 24458328 -61237426 + AT_rich Low_complexity Low_complexity 1 30 0 6374 15 0 0 chr15 24458328 24459047 -61236707 - L1PA3 LINE L1 -4 6151 5433 186 43 0 0 chr15 24459068 24459091 -61236663 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 4179 183 54 30 chr15 24459091 24460196 -61235558 - L1MC1 LINE L1 -5236 1190 24 223 321 176 18 chr15 24460238 24460403 -61235351 + L2 LINE L2 2286 2476 -838 270 320 99 77 chr15 24460589 24461032 -61234722 + L2 LINE L2 2813 3265 -7 2016 220 90 35 chr15 24462179 24462866 -61232888 - L1MC4a LINE L1 -2 7806 7082 192 152 0 0 chr15 24463044 24463077 -61232677 + (CCTA)n Simple_repeat Simple_repeat 2 34 0 788 219 42 137 chr15 24463317 24463783 -61231971 - LTR28 LTR ERV1 -141 894 5 319 207 7 29 chr15 24464680 24464820 -61230934 + (TA)n Simple_repeat Simple_repeat 1 137 0 218 217 0 0 chr15 24464834 24464880 -61230874 + (TA)n Simple_repeat Simple_repeat 1 46 0 337 264 53 24 chr15 24464891 24465099 -61230655 - L1ME4a LINE L1 -216 5905 5692 2389 77 7 0 chr15 24465218 24465528 -61230226 - AluSq SINE Alu 0 313 2 580 282 24 28 chr15 24467188 24467401 -61228353 + MIR SINE MIR 48 259 -3 365 318 103 40 chr15 24467910 24468133 -61227621 - MIR SINE MIR -6 256 20 181 327 0 18 chr15 24468386 24468441 -61227313 - MER5B DNA MER1_type -38 140 87 392 256 50 8 chr15 24469098 24469219 -61226535 - L2 LINE L2 0 3313 3188 396 256 137 30 chr15 24469715 24469883 -61225871 + MER5A DNA MER1_type 1 186 -3 429 360 124 14 chr15 24470636 24470911 -61224843 - L2 LINE L2 0 3272 2968 288 275 104 48 chr15 24471368 24471783 -61223971 + L1ME4a LINE L1 5652 6089 -32 579 237 13 39 chr15 24473672 24473828 -61221926 - L2 LINE L2 0 3313 3162 4227 170 101 18 chr15 24473838 24474697 -61221057 + MER21A LTR ERV1 1 931 0 9706 204 51 19 chr15 24474757 24477993 -61217761 + MER21A-int LTR ERV1 1189 3490 -701 2319 160 26 24 chr15 24477993 24478455 -61217299 + MER21A-int LTR ERV1 3594 4056 -135 1048 40 0 0 chr15 24478457 24478582 -61217172 + L1MA1 LINE L1 6174 6298 -4 598 124 0 0 chr15 24478626 24478715 -61217039 + MER21A-int LTR ERV1 4048 4136 -55 3492 176 111 28 chr15 24478840 24479600 -61216154 + MER21A LTR ERV1 103 925 -6 1732 167 44 0 chr15 24479648 24479941 -61215813 + AluJb SINE Alu 1 306 -6 198 167 0 0 chr15 24479941 24479977 -61215777 + GA-rich Low_complexity Low_complexity 1 36 0 670 292 88 21 chr15 24479989 24480301 -61215453 - L2 LINE L2 -189 3124 2794 2243 99 26 0 chr15 24481175 24481477 -61214277 + AluSx SINE Alu 1 310 -2 286 301 87 23 chr15 24481511 24481684 -61214070 + MIR SINE MIR 9 192 -70 25 31 0 0 chr15 24481698 24481730 -61214024 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr15 24482092 24482114 -61213640 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 328 243 78 24 chr15 24482131 24482437 -61213317 + MER57A LTR ERV1 18 403 0 2150 127 0 7 chr15 24482775 24483074 -61212680 - AluSx SINE Alu -15 297 1 309 26 0 0 chr15 24483306 24483344 -61212410 + (TTA)n Simple_repeat Simple_repeat 3 40 0 4564 34 0 0 chr15 24483344 24483882 -61211872 - L1PA4 LINE L1 -18 6137 5600 2593 30 23 0 chr15 24483882 24484254 -61211500 + L1PA4 LINE L1 5215 5593 -562 1555 249 12 10 chr15 24484361 24484766 -61210988 + L1ME2 LINE L1 36 441 -5955 * 2961 229 47 30 chr15 24484764 24485774 -61209980 + L1ME2 LINE L1 4182 5208 -1007 581 263 54 32 chr15 24485782 24486060 -61209694 + L1ME2 LINE L1 5940 6223 -10 22 0 0 0 chr15 24486065 24486087 -61209667 + AT_rich Low_complexity Low_complexity 1 22 0 204 270 98 110 chr15 24486365 24486528 -61209226 + MIR3 SINE MIR 20 180 -28 21 0 0 0 chr15 24486817 24486838 -61208916 + AT_rich Low_complexity Low_complexity 1 21 0 2177 122 10 0 chr15 24486970 24487274 -61208480 - AluSx SINE Alu 0 312 6 828 232 43 21 chr15 24488270 24488503 -61207251 + MIR SINE MIR 25 262 0 577 174 0 0 chr15 24488520 24488618 -61207136 + Tigger4(Zombi) DNA MER2_type 2 99 -2632 455 0 18 0 chr15 24488738 24488793 -61206961 + (CA)n Simple_repeat Simple_repeat 1 56 0 351 0 0 0 chr15 24488792 24488831 -61206923 + (GA)n Simple_repeat Simple_repeat 2 40 0 * 191 336 109 18 chr15 24488875 24488985 -61206769 - L2 LINE L2 -212 3060 2941 200 35 35 0 chr15 24489972 24490001 -61205753 + (CAA)n Simple_repeat Simple_repeat 3 32 0 192 398 54 12 chr15 24491112 24491278 -61204476 + L2 LINE L2 2857 3029 -243 433 273 47 16 chr15 24491515 24491643 -61204111 - MIR SINE MIR -55 207 76 21 36 0 0 chr15 24492268 24492296 -61203458 + AT_rich Low_complexity Low_complexity 1 28 0 189 107 0 0 chr15 24493130 24493158 -61202596 + (TATG)n Simple_repeat Simple_repeat 3 30 0 280 347 78 60 chr15 24493504 24493835 -61201919 + L2 LINE L2 2936 3272 0 213 260 13 13 chr15 24494122 24494199 -61201555 + (TA)n Simple_repeat Simple_repeat 2 78 0 213 121 0 0 chr15 24494246 24494279 -61201475 + (TA)n Simple_repeat Simple_repeat 1 33 0 192 152 0 0 chr15 24494342 24494375 -61201379 + (TA)n Simple_repeat Simple_repeat 1 33 0 226 200 15 15 chr15 24494410 24494475 -61201279 + (TA)n Simple_repeat Simple_repeat 1 65 0 460 211 8 8 chr15 24494536 24494669 -61201085 + (TA)n Simple_repeat Simple_repeat 2 134 0 195 100 0 0 chr15 24496542 24496572 -61199182 + (GGA)n Simple_repeat Simple_repeat 1 30 0 2250 71 7 0 chr15 24497093 24497403 -61198351 + AluY SINE Alu 1 312 0 180 0 0 0 chr15 24497437 24497457 -61198297 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2646 69 3 0 chr15 24497515 24497865 -61197889 - MLT2A1 LTR ERVL -93 351 1 297 292 18 9 chr15 24499180 24499293 -61196461 + (TATATG)n Simple_repeat Simple_repeat 6 119 0 437 181 172 9 chr15 24499360 24499476 -61196278 + MIR SINE MIR 104 238 -24 831 231 51 5 chr15 24500407 24500602 -61195152 - MER3 DNA MER1_type -4 205 2 385 291 122 14 chr15 24501427 24501575 -61194179 + MIR3 SINE MIR 21 184 -24 330 336 23 8 chr15 24501597 24501728 -61194026 + L2 LINE L2 3138 3270 -2 197 83 28 0 chr15 24503074 24503110 -61192644 + (TAA)n Simple_repeat Simple_repeat 2 38 0 773 271 63 9 chr15 24503112 24503333 -61192421 - MIR SINE MIR -23 239 7 259 254 164 57 chr15 24503448 24503570 -61192184 - MER45A DNA AcHobo -43 135 1 1793 123 74 49 chr15 24503770 24504136 -61191618 - THE1C LTR MaLR 0 375 1 2328 99 0 0 chr15 24505619 24505912 -61189842 + AluSx SINE Alu 1 293 -19 618 101 28 0 chr15 24505912 24506021 -61189733 + GA-rich Low_complexity Low_complexity 1 112 0 354 318 87 0 chr15 24506296 24506422 -61189332 - MER91C DNA MER1_type -3 137 1 322 288 87 80 chr15 24506594 24506893 -61188861 - L2 LINE L2 -168 3104 2804 455 290 159 14 chr15 24507029 24507243 -61188511 + MIR SINE MIR 11 255 -7 21 0 0 0 chr15 24507583 24507604 -61188150 + AT_rich Low_complexity Low_complexity 1 21 0 258 207 0 0 chr15 24507712 24507770 -61187984 + (CA)n Simple_repeat Simple_repeat 2 59 0 195 42 0 0 chr15 24507770 24507794 -61187960 + (GA)n Simple_repeat Simple_repeat 2 25 0 1302 0 0 0 chr15 24508503 24508675 -61187079 - AluYa5 SINE Alu 0 309 138 767 219 124 0 chr15 24509056 24509321 -61186433 + L1ME3A LINE L1 5865 6162 -8 540 297 103 6 chr15 24509942 24510117 -61185637 - MIR SINE MIR -34 228 37 1621 202 0 0 chr15 24510286 24510573 -61185181 + AluSx SINE Alu 12 298 -14 1852 138 0 66 chr15 24510605 24510924 -61184830 + AluSx SINE Alu 1 298 -14 571 321 41 16 chr15 24511852 24512098 -61183656 - MIR SINE MIR -10 252 1 2126 130 3 0 chr15 24518257 24518558 -61177196 + AluSx SINE Alu 1 302 -10 214 282 0 56 chr15 24519638 24519709 -61176045 - L2 LINE L2 -212 3060 2994 25 31 0 0 chr15 24519770 24519802 -61175952 + AT_rich Low_complexity Low_complexity 1 32 0 2225 93 7 0 chr15 24519809 24520099 -61175655 - AluSp SINE Alu -21 292 1 2254 85 10 7 chr15 24522272 24522565 -61173189 + AluY SINE Alu 3 296 -15 2054 114 4 0 chr15 24522831 24523102 -61172652 - AluSx SINE Alu -32 280 9 341 252 96 15 chr15 24523617 24523752 -61172002 - MIR SINE MIR 0 262 117 468 286 141 5 chr15 24524853 24525052 -61170702 + MIR SINE MIR 28 253 -9 344 346 71 82 chr15 24525397 24525677 -61170077 + L2 LINE L2 2977 3253 -19 180 0 0 0 chr15 24527277 24527297 -61168457 + (T)n Simple_repeat Simple_repeat 1 20 0 2410 113 0 24 chr15 24529772 24530145 -61165609 - THE1B LTR MaLR 0 364 1 1694 186 37 3 chr15 24530902 24531198 -61164556 - AluJo SINE Alu -6 306 1 191 441 38 25 chr15 24531203 24531523 -61164231 + L2 LINE L2 2554 2877 -437 214 320 77 0 chr15 24532366 24532444 -61163310 - MIR SINE MIR -96 166 83 527 336 58 0 chr15 24532479 24532702 -61163052 + MIR SINE MIR 21 256 -6 693 259 15 72 chr15 24532840 24533103 -61162651 + MIR SINE MIR 14 261 -1 1251 187 3 60 chr15 24533407 24533690 -61162064 + Tigger7 DNA MER2_type 1 267 -466 366 171 146 12 chr15 24533703 24533785 -61161969 + Tigger7 DNA MER2_type 2395 2487 0 730 211 33 28 chr15 24534236 24534416 -61161338 + MIR SINE MIR 79 259 -3 357 327 216 7 chr15 24534829 24535107 -61160647 + L2 LINE L2 2418 2753 -561 294 220 100 30 chr15 24535176 24535276 -61160478 - MLT1F LTR MaLR -25 517 411 217 286 59 50 chr15 24535628 24535684 -61160070 + L2 LINE L2 2835 2889 -383 183 42 0 0 chr15 24535684 24535708 -61160046 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 217 286 59 50 chr15 24535708 24535770 -61159984 + L2 LINE L2 2889 2954 -318 196 221 59 44 chr15 24536363 24536431 -61159323 - MIR SINE MIR -121 87 19 729 190 28 0 chr15 24537238 24537380 -61158374 - MER105 DNA DNA -7 197 52 * 1937 194 39 67 chr15 24537379 24537889 -61157865 + MLT1D LTR MaLR 10 505 0 239 210 65 16 chr15 24537889 24537946 -61157808 - MER105 DNA DNA -144 60 1 374 376 24 6 chr15 24539025 24539190 -61156564 - MIR SINE MIR -89 173 6 1562 207 29 45 chr15 24540997 24541374 -61154380 + MLT1A2 LTR MaLR 1 371 -3 2013 169 35 36 chr15 24541382 24541939 -61153815 - MLT2A2 LTR ERVL 0 554 1 408 177 10 52 chr15 24541939 24542035 -61153719 - MER45 DNA AcHobo -22 1559 1468 580 159 61 23 chr15 24542041 24542173 -61153581 - MER45 DNA AcHobo -1394 187 51 294 305 82 67 chr15 24542215 24542484 -61153270 - L2 LINE L2 -888 2426 2154 276 331 46 39 chr15 24542485 24542615 -61153139 + L2 LINE L2 3182 3312 -1 319 245 167 0 chr15 24543984 24544086 -61151668 + MIR SINE MIR 4 122 -140 386 236 81 41 chr15 24544288 24544411 -61151343 - MIR SINE MIR -107 155 28 2150 131 3 0 chr15 24545335 24545641 -61150113 + AluSx SINE Alu 1 307 -5 203 277 108 0 chr15 24545657 24545722 -61150032 - MIR SINE MIR -71 191 120 725 318 31 4 chr15 24546050 24546305 -61149449 + MIR SINE MIR 1 262 0 411 299 91 42 chr15 24546425 24546666 -61149088 - MIR SINE MIR -8 254 2 420 407 17 28 chr15 24546711 24547070 -61148684 + L2 LINE L2 2821 3175 -97 824 184 36 0 chr15 24547186 24547354 -61148400 + MER3 DNA MER1_type 2 128 -81 228 294 50 78 chr15 24547808 24547988 -61147766 + L2 LINE L2 3139 3313 0 180 295 155 111 chr15 24548578 24548920 -61146834 - L2 LINE L2 -10 3262 2906 264 313 135 24 chr15 24549433 24549641 -61146113 - MIR SINE MIR -12 250 20 363 349 102 49 chr15 24549902 24550226 -61145528 - L2 LINE L2 0 3272 2932 367 239 60 22 chr15 24551471 24551605 -61144149 + MIR SINE MIR 78 216 -46 25 0 0 0 chr15 24551661 24551686 -61144068 + AT_rich Low_complexity Low_complexity 1 25 0 1871 143 10 52 chr15 24551694 24552125 -61143629 + L1MA9 LINE L1 5933 6347 0 2133 100 10 32 chr15 24552217 24552574 -61143180 + AluSx SINE Alu 1 350 0 228 250 0 0 chr15 24553548 24553600 -61142154 + L2 LINE L2 3143 3194 -78 230 250 52 73 chr15 24554121 24554217 -61141537 + MIR3 SINE MIR 110 203 -5 581 314 16 31 chr15 24554224 24554415 -61141339 - MIR3 SINE MIR -11 197 10 1399 175 59 31 chr15 24554628 24554914 -61140840 - AluJb SINE Alu -18 294 1 527 297 22 43 chr15 24555242 24555427 -61140327 + MER5A DNA MER1_type 4 184 -5 225 0 0 0 chr15 24555723 24555748 -61140006 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1961 95 0 0 chr15 24555748 24556000 -61139754 - AluY SINE Alu -33 278 27 22 56 0 0 chr15 24557818 24557854 -61137900 + AT_rich Low_complexity Low_complexity 1 36 0 1763 174 32 29 chr15 24558104 24558414 -61137340 - AluJo SINE Alu -1 311 1 202 296 0 0 chr15 24560123 24560177 -61135577 + CT-rich Low_complexity Low_complexity 4 57 0 345 47 0 0 chr15 24562033 24562076 -61133678 + (TG)n Simple_repeat Simple_repeat 2 44 0 993 298 26 61 chr15 24562473 24562930 -61132824 - L2 LINE L2 0 3313 2873 320 235 0 82 chr15 24562933 24562966 -61132788 - L2 LINE L2 -611 2703 2669 1937 165 58 3 chr15 24562966 24563312 -61132442 - MLT1A1 LTR MaLR 0 365 1 320 235 0 82 chr15 24563312 24563376 -61132378 - L2 LINE L2 -645 2669 2614 457 303 152 0 chr15 24563383 24563528 -61132226 - L2 LINE L2 -1734 1580 1414 3189 291 65 22 chr15 24563537 24564645 -61131109 - L2 LINE L2 -2134 1180 25 23 33 0 0 chr15 24566533 24566563 -61129191 + AT_rich Low_complexity Low_complexity 1 30 0 492 32 0 0 chr15 24566806 24566868 -61128886 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 2974 173 85 44 chr15 24569348 24570104 -61125650 - LTR48 LTR ERV1 0 787 1 768 122 0 0 chr15 24570303 24570410 -61125344 - AluSg/x SINE Alu -10 300 194 599 241 15 15 chr15 24570803 24570936 -61124818 - FLAM_A SINE Alu 0 133 1 180 304 0 0 chr15 24572247 24572293 -61123461 + MIR SINE MIR 72 117 -145 1557 181 34 24 chr15 24573119 24573412 -61122342 + AluSx SINE Alu 1 296 -16 569 153 21 21 chr15 24573543 24573687 -61122067 + GA-rich Low_complexity Low_complexity 1 144 0 374 283 147 8 chr15 24573822 24573979 -61121775 + MIR SINE MIR 21 192 -57 27 29 0 0 chr15 24574376 24574410 -61121344 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr15 24575104 24575127 -61120627 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr15 24575896 24575929 -61119825 + AT_rich Low_complexity Low_complexity 1 33 0 233 245 0 53 chr15 24577119 24577213 -61118541 + L1MC4 LINE L1 6615 6703 -1339 201 161 0 0 chr15 24577221 24577252 -61118502 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 266 229 86 0 chr15 24577653 24577723 -61118031 - L2 LINE L2 -1 3271 3196 29 0 0 0 chr15 24577959 24577988 -61117766 + AT_rich Low_complexity Low_complexity 1 29 0 229 238 84 105 chr15 24580674 24580743 -61115011 + MLT1I LTR MaLR 270 339 -70 2242 125 0 0 chr15 24580743 24581047 -61114707 + AluSq SINE Alu 1 304 -9 229 238 84 105 chr15 24581047 24581120 -61114634 + MLT1I LTR MaLR 339 409 0 27 49 0 0 chr15 24581148 24581189 -61114565 + AT_rich Low_complexity Low_complexity 1 41 0 1563 189 32 48 chr15 24581285 24581597 -61114157 + AluJb SINE Alu 1 307 -5 310 175 31 21 chr15 24581597 24581694 -61114060 + GA-rich Low_complexity Low_complexity 2 99 0 353 350 0 6 chr15 24581795 24581952 -61113802 + AluJb SINE Alu 140 295 -7 264 149 0 0 chr15 24581965 24582012 -61113742 + (GGGAA)n Simple_repeat Simple_repeat 5 51 0 1298 278 90 2 chr15 24582952 24583352 -61112402 + L2 LINE L2 2310 2744 -570 494 336 7 0 chr15 24583464 24583610 -61112144 + L2 LINE L2 3167 3313 0 723 271 128 40 chr15 24587836 24588384 -61107370 + MLT1G LTR MaLR 1 553 -2 22 0 0 0 chr15 24589320 24589342 -61106412 + AT_rich Low_complexity Low_complexity 1 22 0 2369 180 52 5 chr15 24589347 24590047 -61105707 - LTR1B LTR ERV1 -54 772 1 3401 189 41 53 chr15 24591913 24592721 -61103033 + MER21B LTR ERV1 66 863 0 198 186 23 0 chr15 24593205 24593248 -61102506 + L2 LINE L2 3267 3310 -3 254 194 102 41 chr15 24593845 24593943 -61101811 + Charlie7 DNA MER1_type 46 149 -2463 215 252 119 70 chr15 24595408 24595551 -61100203 - MIR3 SINE MIR -8 200 51 343 321 19 9 chr15 24596598 24596704 -61099050 + L1ME1 LINE L1 5963 6069 -97 261 206 0 0 chr15 24596705 24596768 -61098986 + L1MB8 LINE L1 6107 6169 -9 403 304 61 37 chr15 24597160 24597374 -61098380 + MIR SINE MIR 19 235 -27 23 0 0 0 chr15 24597459 24597482 -61098272 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr15 24598070 24598102 -61097652 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr15 24599438 24599460 -61096294 + (CA)n Simple_repeat Simple_repeat 1 22 0 646 309 57 4 chr15 24599677 24599907 -61095847 + MIR SINE MIR 13 254 -8 240 35 0 0 chr15 24599908 24599937 -61095817 + (TTA)n Simple_repeat Simple_repeat 1 29 0 563 250 7 33 chr15 24600590 24600742 -61095012 + MER69 DNA AcHobo 1 148 -2378 236 258 30 0 chr15 24600857 24600923 -61094831 - MIR SINE MIR -15 247 180 986 187 109 7 chr15 24601093 24601376 -61094378 + Charlie4a DNA MER1_type 16 327 -181 3071 265 89 25 chr15 24601399 24603086 -61092668 + L1MEc LINE L1 37 1913 -4483 1551 270 33 5 chr15 24603099 24603740 -61092014 + L1MEc LINE L1 2598 3256 -2959 1259 227 23 132 chr15 24603747 24604262 -61091492 + MLT1E LTR MaLR 1 459 -134 290 266 89 103 chr15 24604277 24604491 -61091263 - L2 LINE L2 -802 2512 2302 659 300 66 53 chr15 24605772 24606306 -61089448 + L2 LINE L2 2781 3311 -2 27 0 0 0 chr15 24606399 24606426 -61089328 + AT_rich Low_complexity Low_complexity 1 27 0 199 208 75 0 chr15 24607157 24607210 -61088544 + L2 LINE L2 3205 3261 -11 1194 205 108 55 chr15 24608517 24608990 -61086764 - MLT1D LTR MaLR 0 505 8 200 310 60 20 chr15 24608996 24609096 -61086658 + MIR SINE MIR 85 188 -74 230 250 0 0 chr15 24609922 24609966 -61085788 + L2 LINE L2 3252 3295 -18 204 250 0 0 chr15 24609990 24610034 -61085720 + L2 LINE L2 3219 3262 -10 2012 130 138 5 chr15 24610322 24610700 -61085054 + MSTA LTR MaLR 1 428 0 3951 157 17 39 chr15 24610839 24611561 -61084193 - L1MA9 LINE L1 0 6312 5609 1853 163 0 13 chr15 24611561 24611862 -61083892 - AluSx SINE Alu -15 297 1 3951 157 17 39 chr15 24611862 24611961 -61083793 - L1MA9 LINE L1 -703 5609 5509 207 258 23 109 chr15 24612691 24612819 -61082935 + MIR SINE MIR 65 181 -81 243 103 0 0 chr15 24612997 24613036 -61082718 + (TG)n Simple_repeat Simple_repeat 2 40 0 738 199 0 7 chr15 24613949 24614095 -61081659 - MER97b DNA MER1_type? -874 179 35 483 100 0 0 chr15 24614133 24614203 -61081551 + (TG)n Simple_repeat Simple_repeat 2 71 0 277 319 52 26 chr15 24614447 24614563 -61081191 - L2 LINE L2 -2 3311 3193 413 248 204 8 chr15 24614826 24615076 -61080678 + MER113 DNA MER1_type? 187 485 -36 276 30 0 0 chr15 24616739 24616772 -61078982 + (TC)n Simple_repeat Simple_repeat 1 33 0 * 333 0 0 0 chr15 24616771 24616808 -61078946 + (CA)n Simple_repeat Simple_repeat 1 37 0 234 227 30 15 chr15 24616808 24616874 -61078880 + GA-rich Low_complexity Low_complexity 1 67 0 213 304 27 80 chr15 24617128 24617240 -61078514 - MIR SINE MIR -81 127 22 467 269 32 13 chr15 24619802 24619958 -61075796 + MLT1I LTR MaLR 244 402 -7 2356 98 0 0 chr15 24621011 24621308 -61074446 + AluSx SINE Alu 1 297 -15 500 124 31 0 chr15 24621308 24621405 -61074349 + GA-rich Low_complexity Low_complexity 1 100 0 5543 146 45 6 chr15 24671747 24673208 -61022546 - L1MA4 LINE L1 -169 6131 4601 3150 135 73 40 chr15 24673214 24673820 -61021934 + L1 LINE L1 3925 4550 -1596 329 302 16 56 chr15 24673823 24673949 -61021805 + MIR SINE MIR 77 197 -65 387 252 187 32 chr15 24674112 24674267 -61021487 - MER5A DNA MER1_type -1 188 10 219 288 106 62 chr15 24675098 24675324 -61020430 + L2 LINE L2 2833 3068 -204 745 295 85 44 chr15 24677863 24678242 -61017512 + L1ME4a LINE L1 5513 5922 -199 2309 241 87 22 chr15 24678242 24678830 -61016924 - MLT1E2 LTR MaLR 0 626 1 745 295 85 44 chr15 24678830 24678993 -61016761 + L1ME4a LINE L1 5922 6077 -44 681 269 56 32 chr15 24680489 24680738 -61015016 - MIR SINE MIR 0 262 8 219 224 0 90 chr15 24680742 24680809 -61014945 + L2 LINE L2 1351 1411 -1903 182 316 98 53 chr15 24681097 24681230 -61014524 + L2 LINE L2 2926 3064 -208 277 289 0 0 chr15 24681399 24681451 -61014303 - L2 LINE L2 -20 3252 3201 331 309 119 22 chr15 24681515 24681735 -61014019 - MIR SINE MIR -2 260 21 397 224 0 31 chr15 24684365 24684463 -61011291 + MIR3 SINE MIR 106 200 -8 516 327 118 9 chr15 24684803 24685014 -61010740 - MIR SINE MIR -8 254 21 467 268 36 30 chr15 24685114 24685282 -61010472 - MIR SINE MIR -34 228 60 2186 109 0 7 chr15 24685292 24685585 -61010169 - AluSx SINE Alu -21 291 1 410 284 45 32 chr15 24685713 24685868 -61009886 - L2 LINE L2 -202 3070 2914 1000 178 59 50 chr15 24686550 24686809 -61008945 + MLT1C LTR MaLR 1 256 -134 218 181 153 14 chr15 24687402 24687474 -61008280 - MIR SINE MIR -1 261 180 208 336 29 10 chr15 24687698 24687802 -61007952 - L2 LINE L2 -48 3265 3160 373 213 38 0 chr15 24688304 24688384 -61007370 + MER5A DNA MER1_type 3 85 -104 25 0 0 0 chr15 24688858 24688883 -61006871 + AT_rich Low_complexity Low_complexity 1 25 0 335 314 19 0 chr15 24688964 24689069 -61006685 + MIR3 SINE MIR 75 181 -27 329 312 26 45 chr15 24692497 24692651 -61003103 + L2 LINE L2 3163 3313 0 5976 108 16 4 chr15 24692970 24694959 -61000795 + L1PA15 LINE L1 4167 6165 0 432 0 0 0 chr15 24695091 24695139 -61000615 + (CA)n Simple_repeat Simple_repeat 1 48 0 450 358 55 9 chr15 24695867 24696085 -60999669 + MIR SINE MIR 17 244 -18 1856 211 31 56 chr15 24697392 24697909 -60997845 + MLT1D LTR MaLR 1 504 -1 285 29 0 0 chr15 24698834 24698868 -60996886 + (TC)n Simple_repeat Simple_repeat 1 34 0 * 489 17 0 0 chr15 24698867 24698925 -60996829 + (CA)n Simple_repeat Simple_repeat 1 58 0 1158 178 19 14 chr15 24699105 24699319 -60996435 - MER20 DNA MER1_type -4 215 1 617 63 0 0 chr15 24699636 24699715 -60996039 - MADE1 DNA Mariner 0 80 2 207 139 0 0 chr15 24700201 24700237 -60995517 + (TTCC)n Simple_repeat Simple_repeat 2 37 0 244 245 71 61 chr15 24700268 24700366 -60995388 + MER5A DNA MER1_type 2 100 -89 341 235 226 0 chr15 24700547 24700662 -60995092 - MIR SINE MIR -30 232 92 379 324 42 0 chr15 24701077 24701219 -60994535 + MLT1K LTR MaLR 31 178 -410 438 283 17 23 chr15 24701352 24701529 -60994225 + MLT1K LTR MaLR 378 553 -35 779 235 26 56 chr15 24702277 24702468 -60993286 - MIR SINE MIR 0 262 78 468 0 0 0 chr15 24702468 24702520 -60993234 + (TA)n Simple_repeat Simple_repeat 1 52 0 779 235 26 56 chr15 24702520 24702562 -60993192 - MIR SINE MIR -184 78 36 466 287 122 8 chr15 24702570 24702777 -60992977 + MIR SINE MIR 11 237 -25 267 31 0 0 chr15 24703515 24703547 -60992207 + (TG)n Simple_repeat Simple_repeat 2 33 0 2349 59 21 0 chr15 24703964 24704253 -60991501 - AluY SINE Alu -16 295 1 295 306 0 10 chr15 24704304 24704402 -60991352 + CT-rich Low_complexity Low_complexity 4 100 0 215 301 14 0 chr15 24705954 24706027 -60989727 + (TATATG)n Simple_repeat Simple_repeat 2 75 0 1253 300 75 25 chr15 24706223 24707172 -60988582 - L1ME3A LINE L1 -230 5940 4906 1412 181 55 78 chr15 24707172 24707571 -60988183 - MLT1B LTR MaLR 0 390 1 1253 300 75 25 chr15 24707571 24707982 -60987772 - L1ME3A LINE L1 -1264 4906 4517 262 224 24 0 chr15 24708011 24708096 -60987658 + CT-rich Low_complexity Low_complexity 1 87 0 332 312 42 37 chr15 24708506 24708721 -60987033 - L1ME3A LINE L1 -2795 3351 3136 297 297 127 0 chr15 24708745 24708863 -60986891 - MIR SINE MIR -8 254 122 388 254 105 91 chr15 24709250 24709459 -60986295 - MIR SINE MIR -16 246 35 269 297 0 0 chr15 24709481 24709545 -60986209 - L2 LINE L2 0 3313 3250 186 189 0 0 chr15 24710173 24710210 -60985544 + CT-rich Low_complexity Low_complexity 4 40 0 2531 292 59 93 chr15 24710210 24710277 -60985477 + L2 LINE L2 212 280 -3034 2416 109 0 0 chr15 24710277 24710590 -60985164 - AluSq SINE Alu 0 313 1 2531 292 59 93 chr15 24710590 24710977 -60984777 + L2 LINE L2 280 679 -2635 370 216 167 0 chr15 24710977 24711261 -60984493 - FRAM SINE Alu 0 335 35 2531 292 59 93 chr15 24711261 24712222 -60983532 + L2 LINE L2 679 1677 -1637 678 263 75 93 chr15 24712660 24713089 -60982665 + L2 LINE L2 1686 2106 -1208 788 113 11 43 chr15 24713196 24713382 -60982372 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 809 168 10 10 chr15 24713382 24713680 -60982074 + CT-rich Low_complexity Low_complexity 1 298 0 325 275 74 69 chr15 24713765 24713954 -60981800 + L1ME LINE L1 5575 5764 -357 220 329 0 0 chr15 24714554 24714627 -60981127 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 363 89 0 0 chr15 24714627 24714683 -60981071 + (CA)n Simple_repeat Simple_repeat 2 57 0 460 271 15 23 chr15 24714683 24714816 -60980938 + L2 LINE L2 3182 3313 0 226 369 117 0 chr15 24715814 24715917 -60979837 + MIR SINE MIR 30 144 -64 184 320 82 31 chr15 24716950 24717047 -60978707 + L2 LINE L2 3185 3286 -27 1555 158 28 111 chr15 24717047 24717445 -60978309 + MLT1A1 LTR MaLR 1 365 0 2104 125 51 3 chr15 24720136 24720489 -60975265 - L1MA4 LINE L1 -11 6289 5920 180 176 0 0 chr15 24720554 24720588 -60975166 + GA-rich Low_complexity Low_complexity 4 37 0 285 289 58 16 chr15 24720644 24720765 -60974989 + L1MC4 LINE L1 7774 7899 -143 685 272 103 28 chr15 24720943 24721303 -60974451 - L1ME4a LINE L1 -273 5848 5462 440 304 53 37 chr15 24721690 24722012 -60973742 - LTR16C LTR ERVL -81 410 84 429 137 0 95 chr15 24723160 24723255 -60972499 - AluJ/FLAM SINE Alu -222 90 5 2266 226 61 5 chr15 24723266 24723893 -60971861 + L1MC4 LINE L1 7238 7899 -143 363 105 0 0 chr15 24723955 24724012 -60971742 + (CA)n Simple_repeat Simple_repeat 1 57 0 371 303 103 13 chr15 24724731 24724886 -60970868 - MIR3 SINE MIR -27 181 13 183 80 0 0 chr15 24724914 24724939 -60970815 + (A)n Simple_repeat Simple_repeat 1 25 0 1142 172 38 0 chr15 24725077 24725286 -60970468 - MER20 DNA MER1_type -2 217 1 308 315 253 0 chr15 24725379 24725557 -60970197 + MIR SINE MIR 15 237 -25 300 188 0 0 chr15 24725891 24725955 -60969799 - MER69 DNA AcHobo -80 2446 2383 321 227 0 0 chr15 24726088 24726154 -60969600 - MER69 DNA AcHobo -110 67 2 1012 78 0 0 chr15 24726478 24726607 -60969147 - AluY SINE Alu -3 308 180 30 69 0 0 chr15 24727294 24727352 -60968402 + AT_rich Low_complexity Low_complexity 1 58 0 443 234 186 21 chr15 24728256 24728401 -60967353 + MER5A DNA MER1_type 21 189 0 264 303 81 10 chr15 24728654 24728753 -60967001 - L2 LINE L2 -222 3091 2986 319 345 0 73 chr15 24728763 24728954 -60966800 + L2 LINE L2 2924 3100 -172 394 324 74 56 chr15 24729022 24729454 -60966300 - LTR16A LTR ERVL -3 447 8 21 36 0 0 chr15 24729944 24729972 -60965782 + AT_rich Low_complexity Low_complexity 1 28 0 378 216 117 18 chr15 24730181 24730292 -60965462 - MER5C DNA MER1_type -202 122 1 2577 46 0 0 chr15 24730752 24731056 -60964698 - AluY SINE Alu -7 304 1 599 0 14 0 chr15 24731437 24731508 -60964246 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 696 288 27 23 chr15 24734621 24734840 -60960914 - MIR SINE MIR -41 221 2 282 73 0 0 chr15 24734987 24735028 -60960726 + (CA)n Simple_repeat Simple_repeat 2 42 0 329 0 24 0 chr15 24735594 24735635 -60960119 + (TC)n Simple_repeat Simple_repeat 1 42 0 396 0 0 0 chr15 24735640 24735684 -60960070 + (CA)n Simple_repeat Simple_repeat 2 45 0 731 212 73 0 chr15 24735699 24735864 -60959890 + MER45A DNA AcHobo 1 177 -1 2421 166 35 39 chr15 24736367 24736438 -60959316 - L1MB7 LINE L1 0 6184 6114 216 0 0 0 chr15 24736438 24736462 -60959292 + (TG)n Simple_repeat Simple_repeat 2 25 0 2421 166 35 39 chr15 24736462 24736794 -60958960 - L1MB7 LINE L1 -70 6114 5781 1730 169 115 3 chr15 24736794 24737150 -60958604 + MSTD LTR MaLR 1 396 0 2421 166 35 39 chr15 24737150 24737313 -60958441 - L1MB7 LINE L1 -403 5781 5619 2165 123 3 19 chr15 24737916 24738336 -60957418 - AluSx SINE Alu 0 415 1 331 160 0 0 chr15 24738337 24738387 -60957367 - MER5A DNA MER1_type -114 75 26 1284 88 47 5 chr15 24738529 24738721 -60957033 + MER30 DNA MER1_type 1 200 -30 358 304 108 19 chr15 24739225 24739383 -60956371 - MER5A DNA MER1_type 0 189 18 198 314 131 7 chr15 24739477 24739614 -60956140 + MIR SINE MIR 109 262 0 223 284 45 0 chr15 24740985 24741052 -60954702 + MIR SINE MIR 59 128 -134 365 209 0 0 chr15 24741167 24741234 -60954520 + MER103 DNA DNA 55 121 -45 184 170 19 75 chr15 24741929 24741982 -60953772 - L2 LINE L2 -669 2645 2596 1292 197 6 15 chr15 24743322 24743832 -60951922 - L1MB8 LINE L1 0 6178 5636 459 316 57 18 chr15 24743874 24744313 -60951441 - L1ME LINE L1 -348 5822 5352 365 94 0 0 chr15 24744362 24744415 -60951339 - MADE1 DNA Mariner -25 55 3 228 300 30 70 chr15 24744470 24744870 -60950884 - L1ME LINE L1 -913 5233 4850 315 0 0 0 chr15 24744870 24744905 -60950849 + (TG)n Simple_repeat Simple_repeat 2 36 0 559 155 20 20 chr15 24744905 24745053 -60950701 + GA-rich Low_complexity Low_complexity 3 150 0 342 200 103 113 chr15 24745055 24745198 -60950556 - L1ME LINE L1 -1317 4829 4687 2298 121 0 0 chr15 24745198 24745503 -60950251 - AluSx SINE Alu -6 306 2 342 200 103 113 chr15 24745503 24745554 -60950200 - L1ME LINE L1 -1459 4687 4637 2215 121 3 0 chr15 24745829 24746134 -60949620 - AluSx SINE Alu -6 306 1 358 280 73 31 chr15 24746226 24746446 -60949308 + L1M4c LINE L1 2287 2519 -3863 733 313 77 20 chr15 24746476 24746827 -60948927 + LTR16B LTR ERVL 1 371 -93 2106 129 35 59 chr15 24746910 24747283 -60948471 + THE1B LTR MaLR 1 364 0 10953 90 16 3 chr15 24747283 24748833 -60946921 + THE1B-int LTR MaLR 1 1569 -11 2022 141 41 39 chr15 24748837 24749200 -60946554 + THE1B LTR MaLR 1 364 0 502 278 72 14 chr15 24749225 24749434 -60946320 + L1M4c LINE L1 2546 2766 -3616 251 257 248 10 chr15 24749711 24749812 -60945942 - L1MEd LINE L1 -5493 626 502 462 277 9 0 chr15 24749831 24749943 -60945811 + MER81 DNA DNA 2 114 0 299 313 80 30 chr15 24750160 24750524 -60945230 - L1MEd LINE L1 -5736 383 2 583 288 61 74 chr15 24751496 24751656 -60944098 + MLT1L LTR MaLR 133 293 -322 2171 126 0 3 chr15 24751656 24751950 -60943804 + AluSc SINE Alu 1 293 -16 583 288 61 74 chr15 24751950 24752278 -60943476 + MLT1L LTR MaLR 293 615 0 28 0 0 0 chr15 24754075 24754103 -60941651 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr15 24754621 24754653 -60941101 + AT_rich Low_complexity Low_complexity 1 32 0 222 105 0 0 chr15 24756115 24756153 -60939601 + (CAT)n Simple_repeat Simple_repeat 3 40 0 508 192 0 210 chr15 24756165 24756394 -60939360 - MIR SINE MIR -36 226 46 1065 197 47 0 chr15 24756682 24756936 -60938818 - L1MD3 LINE L1 0 7995 7730 3088 48 20 0 chr15 24756944 24757337 -60938417 - L1PA7 LINE L1 0 6154 5754 6960 82 1 1 chr15 24757338 24758334 -60937420 - L1P LINE L1 -1451 4695 3700 4671 88 12 16 chr15 24758334 24758523 -60937231 + L1P LINE L1 2941 3129 -3017 2476 81 0 7 chr15 24758523 24758832 -60936922 + AluY SINE Alu 1 307 -4 4671 88 12 16 chr15 24758832 24759382 -60936372 + L1P LINE L1 3129 3677 -2469 2044 140 0 0 chr15 24759393 24759721 -60936033 + MER47A DNA MER2_type 39 366 0 496 187 19 0 chr15 24760147 24760254 -60935500 + MER57A LTR ERV1 295 403 0 198 0 0 0 chr15 24760675 24760697 -60935057 + (T)n Simple_repeat Simple_repeat 1 22 0 2320 116 3 18 chr15 24761638 24762018 -60933736 - L1MA2 LINE L1 0 6304 5931 429 253 32 26 chr15 24762087 24762250 -60933504 - MIR3 SINE MIR -34 174 10 839 244 119 35 chr15 24762817 24763175 -60932579 - L1ME3A LINE L1 -27 6143 5750 1993 129 34 45 chr15 24763175 24763554 -60932200 + THE1C LTR MaLR 1 375 0 839 244 119 35 chr15 24763554 24763572 -60932182 - L1ME3A LINE L1 -420 5750 5735 318 106 0 0 chr15 24763749 24763796 -60931958 + (TG)n Simple_repeat Simple_repeat 2 48 0 1679 224 143 27 chr15 24764429 24765085 -60930669 - MER50 LTR ERV1 -2 732 1 24 32 0 0 chr15 24765663 24765694 -60930060 + AT_rich Low_complexity Low_complexity 1 31 0 222 62 0 0 chr15 24766599 24766631 -60929123 + (TG)n Simple_repeat Simple_repeat 1 32 0 269 140 18 0 chr15 24766631 24766688 -60929066 + GA-rich Low_complexity Low_complexity 2 59 0 273 318 47 62 chr15 24767241 24767433 -60928321 - MER5A DNA MER1_type 0 189 1 1502 230 3 0 chr15 24767551 24767842 -60927912 - AluJo SINE Alu -11 301 10 289 315 62 0 chr15 24769198 24769328 -60926426 + MER102a DNA MER1_type 174 311 -19 2094 169 0 3 chr15 24769580 24769917 -60925837 - MER1B DNA MER1_type 0 337 2 496 341 45 100 chr15 24770107 24770899 -60924855 + L2 LINE L2 1788 2536 -778 3144 169 45 8 chr15 24775034 24775686 -60920068 - L1MC2 LINE L1 -8 6336 5661 200 297 31 0 chr15 24775795 24775859 -60919895 + L2 LINE L2 3207 3272 0 1203 181 166 21 chr15 24775885 24776063 -60919691 + MLT1B LTR MaLR 1 152 -238 276 30 0 0 chr15 24776063 24776096 -60919658 + (TG)n Simple_repeat Simple_repeat 2 34 0 1203 181 166 21 chr15 24776096 24776254 -60919500 + MLT1B LTR MaLR 152 386 -4 254 280 68 23 chr15 24776434 24776566 -60919188 - L1MC2 LINE L1 -452 5669 5532 222 37 0 0 chr15 24776983 24777010 -60918744 + (TG)n Simple_repeat Simple_repeat 2 28 0 325 267 11 11 chr15 24777322 24777412 -60918342 + MIR3 SINE MIR 119 208 0 424 290 5 82 chr15 24777500 24777707 -60918047 - MIR3 SINE MIR -11 197 7 522 297 115 38 chr15 24778825 24779034 -60916720 - MIR SINE MIR -25 237 13 832 289 60 53 chr15 24779063 24779517 -60916237 + LTR16A1 LTR ERVL 1 457 0 235 338 13 0 chr15 24779538 24779615 -60916139 - MLT1K LTR MaLR -189 399 322 190 274 226 0 chr15 24780222 24780328 -60915426 - MIR SINE MIR -75 187 58 1766 205 13 55 chr15 24781100 24781481 -60914273 - MLT1A1 LTR MaLR 0 365 1 1027 234 22 0 chr15 24781583 24781810 -60913944 - MLT1G LTR MaLR -5 585 354 237 245 0 0 chr15 24782390 24782443 -60913311 - MIR SINE MIR -75 133 81 6664 70 7 12 chr15 24782463 24784097 -60911657 + L1PA7 LINE L1 4511 6153 -1 21 57 0 0 chr15 24784267 24784302 -60911452 + AT_rich Low_complexity Low_complexity 1 35 0 892 251 111 36 chr15 24784302 24784805 -60910949 - L1ME4a LINE L1 -11 6110 5570 186 225 0 0 chr15 24784924 24784964 -60910790 - L3b LINE CR1 -2 1581 1542 2167 184 23 28 chr15 24785111 24785541 -60910213 + MSTB1 LTR MaLR 1 428 -4 1218 242 85 32 chr15 24785785 24786186 -60909568 - MLT1D LTR MaLR -42 463 42 1799 153 3 19 chr15 24786187 24786495 -60909259 + AluSp SINE Alu 1 303 -10 1677 149 69 36 chr15 24786937 24787300 -60908454 - THE1C LTR MaLR 0 375 1 834 214 12 0 chr15 24787674 24787847 -60907907 + MER58B DNA MER1_type 167 341 0 532 202 22 13 chr15 24787877 24788106 -60907648 + CT-rich Low_complexity Low_complexity 1 231 0 227 301 0 11 chr15 24788112 24788205 -60907549 - MER58C DNA MER1_type -70 145 54 519 285 51 95 chr15 24788261 24788693 -60907061 - MLT1K LTR MaLR 0 588 176 534 209 209 0 chr15 24788788 24788936 -60906818 + MER5A DNA MER1_type 11 189 0 225 274 73 24 chr15 24789079 24789203 -60906551 - MLT1L LTR MaLR -2 613 484 291 297 65 26 chr15 24789208 24789363 -60906391 - MLT1L LTR MaLR -342 273 113 476 272 68 5 chr15 24790548 24790732 -60905022 - MIR SINE MIR -19 243 50 250 213 43 0 chr15 24791026 24791073 -60904681 + L2 LINE L2 3229 3277 -36 219 36 0 0 chr15 24791118 24791146 -60904608 + (TC)n Simple_repeat Simple_repeat 1 28 0 1811 186 50 67 chr15 24791200 24791678 -60904076 - MLT2B1 LTR ERVL -50 470 1 21 0 0 0 chr15 24791751 24791772 -60903982 + AT_rich Low_complexity Low_complexity 1 21 0 215 293 165 18 chr15 24791812 24791976 -60903778 + MIR SINE MIR 74 261 -1 323 245 119 46 chr15 24793433 24793584 -60902170 + MIR SINE MIR 27 188 -74 256 310 138 0 chr15 24793825 24793912 -60901842 - L2 LINE L2 -12 3260 3162 27 29 0 0 chr15 24794947 24794981 -60900773 + AT_rich Low_complexity Low_complexity 1 34 0 1613 170 0 17 chr15 24794983 24795272 -60900482 - AluJo SINE Alu -28 284 1 1139 267 77 45 chr15 24796205 24796969 -60898785 + HAL1 LINE L1 887 1675 -832 474 328 18 93 chr15 24797027 24797478 -60898276 - LTR67 LTR ERVL -136 421 5 2602 71 0 0 chr15 24798709 24799020 -60896734 - AluY SINE Alu 0 311 1 2005 136 3 10 chr15 24799387 24799702 -60896052 - AluSx SINE Alu 0 312 1 756 340 96 52 chr15 24800136 24801054 -60894700 + L2 LINE L2 2344 3312 -1 1226 227 28 13 chr15 24801323 24801640 -60894114 - MER33 DNA MER1_type -2 322 1 1378 218 99 26 chr15 24801661 24802005 -60893749 - MLT1A2 LTR MaLR -4 370 2 469 308 190 4 chr15 24802142 24802405 -60893349 + L3 LINE CR1 1261 1572 -5 21 0 0 0 chr15 24802749 24802770 -60892984 + AT_rich Low_complexity Low_complexity 1 21 0 1232 123 0 0 chr15 24802771 24802941 -60892813 - FRAM SINE Alu -9 167 1 2443 81 0 3 chr15 24803381 24803688 -60892066 - AluY SINE Alu -5 306 1 777 154 6 12 chr15 24804775 24804944 -60890810 + CT-rich Low_complexity Low_complexity 3 170 0 1807 184 57 25 chr15 24808517 24808870 -60886884 - MLT1A1 LTR MaLR -1 364 1 1590 234 33 70 chr15 24810811 24811265 -60884489 - MLT1H LTR MaLR -112 437 1 1109 263 76 66 chr15 24813667 24814180 -60881574 + MER115 DNA AcHobo 100 617 -76 952 151 0 0 chr15 24814180 24814319 -60881435 - FLAM_C SINE Alu -4 139 1 2231 247 64 35 chr15 24814814 24815104 -60880650 - L1ME1 LINE L1 -5 6161 5872 409 334 123 20 chr15 24815104 24815511 -60880243 - L1PA3 LINE L1 -275 5880 5432 2326 132 35 24 chr15 24815787 24816158 -60879596 + THE1C LTR MaLR 1 375 0 664 301 99 18 chr15 24816319 24816701 -60879053 - LTR16C LTR ERVL 0 491 79 198 298 0 18 chr15 24817140 24817197 -60878557 - L2 LINE L2 -15 3298 3243 362 192 41 0 chr15 24818306 24818379 -60877375 - L1MC4 LINE L1 -1 8041 7966 * 2652 196 41 76 chr15 24818376 24818768 -60876986 - L1MC4 LINE L1 -443 7599 7246 6546 111 20 0 chr15 24818768 24820189 -60875565 - L1PA10 LINE L1 -3 6165 4728 2652 196 41 76 chr15 24820189 24820557 -60875197 - L1MC4 LINE L1 -796 7246 6866 243 0 0 0 chr15 24820601 24820628 -60875126 + (TG)n Simple_repeat Simple_repeat 2 28 0 662 216 11 13 chr15 24820639 24820832 -60874922 - L1MC4a LINE L1 -1207 6601 6445 933 278 107 42 chr15 24821252 24821634 -60874120 - MLT1I LTR MaLR 0 409 3 268 239 100 30 chr15 24821922 24822251 -60873503 - L1ME4a LINE L1 -2 6119 5731 1324 263 91 21 chr15 24822332 24822807 -60872947 + LTR33A LTR ERVL 13 520 -3 326 267 36 61 chr15 24823362 24823527 -60872227 + L1MEd LINE L1 2 162 -5957 1142 133 61 10 chr15 24823611 24823807 -60871947 + MER2 DNA MER2_type 1 206 -139 21 36 0 0 chr15 24823837 24823865 -60871889 + AT_rich Low_complexity Low_complexity 1 28 0 649 206 129 46 chr15 24824950 24825144 -60870610 - MER63A DNA MER1_type 0 210 1 22 0 0 0 chr15 24825232 24825254 -60870500 + AT_rich Low_complexity Low_complexity 1 22 0 3079 222 66 29 chr15 24825322 24825614 -60870140 + L1ME2 LINE L1 5119 5399 -765 2578 162 21 23 chr15 24825614 24826041 -60869713 - MSTB LTR MaLR 0 426 1 3079 222 66 29 chr15 24826041 24826681 -60869073 + L1ME2 LINE L1 5399 6101 -63 21 0 0 0 chr15 24826705 24826726 -60869028 + AT_rich Low_complexity Low_complexity 1 21 0 2041 182 28 8 chr15 24827719 24828077 -60867677 - MLT1A1 LTR MaLR 0 365 1 24 0 0 0 chr15 24828679 24828703 -60867051 + AT_rich Low_complexity Low_complexity 1 24 0 186 351 0 0 chr15 24830083 24830140 -60865614 - L2 LINE L2 -13 3259 3203 306 0 0 0 chr15 24830880 24830914 -60864840 + (TG)n Simple_repeat Simple_repeat 2 35 0 2668 171 98 34 chr15 24831950 24832482 -60863272 - MLT1F1 LTR MaLR 0 567 2 219 139 0 0 chr15 24832544 24832580 -60863174 + (GAA)n Simple_repeat Simple_repeat 1 36 0 1097 280 64 33 chr15 24834492 24834881 -60860873 + MLT1I LTR MaLR 6 406 -3 243 0 0 0 chr15 24835703 24835730 -60860024 + (CA)n Simple_repeat Simple_repeat 2 28 0 290 213 205 25 chr15 24836751 24836873 -60858881 - MER103 DNA DNA -7 159 16 199 324 99 9 chr15 24837073 24837184 -60858570 + MIR SINE MIR 96 216 -46 294 363 50 25 chr15 24837634 24837835 -60857919 - MIR3 SINE MIR 0 208 3 702 268 73 19 chr15 24838043 24838395 -60857359 - LTR16A1 LTR ERVL -4 453 12 375 247 11 21 chr15 24839097 24839190 -60856564 - MIR3 SINE MIR -50 158 67 365 225 12 0 chr15 24839261 24839341 -60856413 + MLT1F LTR MaLR 124 204 -338 1586 244 113 4 chr15 24840707 24841157 -60854597 + MLT1F LTR MaLR 44 542 0 2130 133 0 3 chr15 24841239 24841539 -60854215 - AluSx SINE Alu -13 299 1 578 335 24 42 chr15 24842160 24842447 -60853307 + MLT1K LTR MaLR 92 373 -215 227 321 12 12 chr15 24842474 24842558 -60853196 + MLT1K LTR MaLR 471 554 -34 35 54 0 0 chr15 24842866 24842922 -60852832 + AT_rich Low_complexity Low_complexity 1 56 0 771 237 75 6 chr15 24842995 24843168 -60852586 - MIR SINE MIR -76 186 2 2429 90 0 0 chr15 24843219 24843529 -60852225 + AluSg SINE Alu 1 310 0 259 216 82 0 chr15 24843797 24843894 -60851860 + Zaphod DNA AcHobo 886 990 -3041 * 1264 206 120 35 chr15 24843885 24844284 -60851470 + Zaphod DNA AcHobo 3590 4022 -9 30 0 0 0 chr15 24844399 24844429 -60851325 + AT_rich Low_complexity Low_complexity 1 30 0 1453 116 14 10 chr15 24844453 24844660 -60851094 - AluSx SINE Alu -102 210 3 232 235 20 31 chr15 24844674 24844772 -60850982 + HAL1b LINE L1 922 1018 -330 22 0 0 0 chr15 24844832 24844854 -60850900 + AT_rich Low_complexity Low_complexity 1 22 0 796 181 16 66 chr15 24846921 24846961 -60848793 - MER5B DNA MER1_type -4 174 134 1673 203 0 20 chr15 24846961 24847267 -60848487 - AluJo SINE Alu -12 300 1 796 181 16 66 chr15 24847267 24847408 -60848346 - MER5B DNA MER1_type -44 134 2 1087 161 16 0 chr15 24847417 24847603 -60848151 + MER5A DNA MER1_type 1 189 0 696 242 26 46 chr15 24847709 24847903 -60847851 + MIR SINE MIR 20 209 -53 721 199 0 7 chr15 24848533 24848669 -60847085 - MIR SINE MIR -66 196 62 355 205 295 0 chr15 24849041 24849153 -60846601 + MER5A DNA MER1_type 26 170 -19 201 298 58 117 chr15 24849044 24849215 -60846539 - MER5A DNA MER1_type -16 173 13 * 528 293 139 60 chr15 24849984 24850841 -60844913 + L2 LINE L2 2309 3237 -76 2179 117 0 0 chr15 24850928 24851234 -60844520 - AluSx SINE Alu 0 306 1 23 0 0 0 chr15 24851240 24851263 -60844491 + AT_rich Low_complexity Low_complexity 1 23 0 2357 91 0 10 chr15 24851289 24851597 -60844157 + AluSx SINE Alu 1 305 -7 216 0 0 0 chr15 24852280 24852304 -60843450 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1994 253 70 12 chr15 24852318 24852991 -60842763 - L1ME1 LINE L1 -6 6160 5449 275 248 60 111 chr15 24853268 24853385 -60842369 + L2 LINE L2 3137 3247 -25 210 143 0 0 chr15 24853642 24853677 -60842077 + (TA)n Simple_repeat Simple_repeat 2 36 0 213 213 21 0 chr15 24853678 24853725 -60842029 + (CA)n Simple_repeat Simple_repeat 1 48 0 724 140 21 166 chr15 24853786 24853979 -60841775 - AluJb SINE Alu -17 295 131 216 97 0 0 chr15 24854721 24854752 -60841002 + (TA)n Simple_repeat Simple_repeat 1 31 0 782 221 6 18 chr15 24854872 24855035 -60840719 - FRAM SINE Alu -5 161 1 670 274 201 8 chr15 24855667 24856035 -60839719 + MLT1H1 LTR MaLR 1 439 -116 310 289 116 16 chr15 24857282 24857403 -60838351 + MER94 DNA DNA 1 133 -1 24 0 0 0 chr15 24857546 24857570 -60838184 + AT_rich Low_complexity Low_complexity 1 24 0 748 264 29 45 chr15 24858006 24858248 -60837506 + MIR SINE MIR 17 254 -8 260 281 124 0 chr15 24858522 24858611 -60837143 - L3b LINE CR1 -156 1427 1328 22 0 0 0 chr15 24860524 24860546 -60835208 + AT_rich Low_complexity Low_complexity 1 22 0 361 278 112 76 chr15 24860547 24860770 -60834984 - MIR SINE MIR -3 259 29 1615 146 7 71 chr15 24861860 24862022 -60833732 - AluJo SINE Alu -31 281 145 2447 58 0 3 chr15 24862022 24862317 -60833437 - AluY SINE Alu -16 295 2 1615 146 7 71 chr15 24862317 24862449 -60833305 - AluJo SINE Alu -167 145 6 21 0 0 0 chr15 24863004 24863025 -60832729 + AT_rich Low_complexity Low_complexity 1 21 0 181 73 24 24 chr15 24863211 24863252 -60832502 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 220 271 29 14 chr15 24863455 24863525 -60832229 + C-rich Low_complexity Low_complexity 3 73 0 384 71 0 0 chr15 24863528 24863584 -60832170 + (CA)n Simple_repeat Simple_repeat 2 57 0 248 313 97 78 chr15 24863842 24864225 -60831529 - L2 LINE L2 -65 3248 2859 245 244 89 33 chr15 24865624 24865714 -60830040 + L2 LINE L2 3219 3313 0 790 232 51 118 chr15 24866663 24867143 -60828611 + MLT1H LTR MaLR 73 519 -30 1693 230 74 41 chr15 24867143 24867394 -60828360 + MLT1E2 LTR MaLR 1 242 -384 2171 110 0 32 chr15 24867394 24867704 -60828050 + AluSx SINE Alu 1 300 -12 1693 230 74 41 chr15 24867704 24868066 -60827688 + MLT1E2 LTR MaLR 242 626 0 578 218 45 62 chr15 24868144 24868323 -60827431 - MER5B DNA MER1_type 0 178 3 615 272 79 83 chr15 24868442 24868509 -60827245 - MLT1L LTR MaLR -2 613 547 2048 121 4 0 chr15 24868509 24868819 -60826935 + AluSq SINE Alu 2 312 0 615 272 79 83 chr15 24868819 24869175 -60826579 - MLT1L LTR MaLR -68 547 100 3166 131 46 26 chr15 24870751 24871294 -60824460 - MER41C LTR ERV1 0 554 1 23 33 0 0 chr15 24872436 24872466 -60823288 + AT_rich Low_complexity Low_complexity 1 30 0 417 246 42 0 chr15 24874222 24874340 -60821414 - MER3 DNA MER1_type -86 123 1 246 264 148 71 chr15 24874997 24875152 -60820602 - MIR3 SINE MIR -3 205 39 2067 104 0 21 chr15 24875841 24876121 -60819633 + AluSx SINE Alu 1 274 -38 23 0 0 0 chr15 24877214 24877237 -60818517 + AT_rich Low_complexity Low_complexity 1 23 0 194 0 39 0 chr15 24878609 24878635 -60817119 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 384 22 0 0 chr15 24879104 24879149 -60816605 + (CA)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr15 24881035 24881057 -60814697 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr15 24884534 24884577 -60811177 + AT_rich Low_complexity Low_complexity 1 43 0 180 200 0 0 chr15 24886079 24886119 -60809635 + (TG)n Simple_repeat Simple_repeat 1 40 0 188 267 99 50 chr15 24889424 24889525 -60806229 - MIR SINE MIR -72 190 85 560 343 11 0 chr15 24892523 24892698 -60803056 - MIR3 SINE MIR -11 197 21 450 181 134 8 chr15 24892763 24892890 -60802864 + L1MA10 LINE L1 6183 6325 -9 459 281 41 14 chr15 24893453 24893599 -60802155 + MIR SINE MIR 20 169 -93 22 0 0 0 chr15 24894582 24894604 -60801150 + AT_rich Low_complexity Low_complexity 1 22 0 624 310 24 39 chr15 24894844 24895099 -60800655 + MIR SINE MIR 2 252 -10 279 174 0 43 chr15 24895594 24895686 -60800068 + (TTATA)n Simple_repeat Simple_repeat 4 91 0 940 282 114 37 chr15 24895940 24896254 -60799500 + L1ME LINE L1 529 817 -5444 2259 105 20 0 chr15 24896254 24896558 -60799196 + AluSg SINE Alu 1 310 0 940 282 114 37 chr15 24896558 24897203 -60798551 + L1ME LINE L1 817 1597 -4664 818 206 0 0 chr15 24897256 24897387 -60798367 - FLAM_C SINE Alu -11 132 2 491 330 149 53 chr15 24897882 24898479 -60797275 + L2 LINE L2 866 1404 -1910 2136 123 7 0 chr15 24898479 24898771 -60796983 - AluSx SINE Alu -18 294 1 491 330 149 53 chr15 24898771 24899269 -60796485 + L2 LINE L2 1404 2066 -1248 337 322 92 57 chr15 24899273 24899587 -60796167 + L2 LINE L2 2653 2977 -337 292 271 178 8 chr15 24901006 24901135 -60794619 + MIR3 SINE MIR 10 160 -48 518 361 51 5 chr15 24901898 24902114 -60793640 + MIR SINE MIR 22 247 -15 2138 136 3 0 chr15 24902117 24902426 -60793328 + AluSq SINE Alu 1 310 -3 396 373 40 8 chr15 24902582 24902829 -60792925 + L2 LINE L2 2615 2869 -445 317 292 159 0 chr15 24903043 24903156 -60792598 + L2 LINE L2 3141 3271 -1 21 0 0 0 chr15 24904491 24904512 -60791242 + AT_rich Low_complexity Low_complexity 1 21 0 421 162 27 0 chr15 24905557 24905631 -60790123 + L1MD2 LINE L1 6265 6340 -19 541 256 106 40 chr15 24906036 24906263 -60789491 + MIR SINE MIR 7 248 -14 555 303 37 6 chr15 24906458 24906620 -60789134 + MIR3 SINE MIR 35 201 -7 398 343 7 29 chr15 24907322 24907459 -60788295 + L2 LINE L2 3139 3272 0 25 31 0 0 chr15 24908212 24908244 -60787510 + AT_rich Low_complexity Low_complexity 1 32 0 400 282 113 52 chr15 24909416 24909664 -60786090 + L2 LINE L2 2924 3186 -86 2369 88 10 0 chr15 24909755 24910062 -60785692 - AluSp SINE Alu -3 310 1 256 258 333 8 chr15 24910201 24910321 -60785433 - MIR SINE MIR -91 171 13 2348 94 0 3 chr15 24910951 24911258 -60784496 - AluSc SINE Alu -3 306 1 369 291 171 0 chr15 24911445 24911620 -60784134 + MIR SINE MIR 58 262 0 1272 248 92 41 chr15 24912316 24912775 -60782979 + MLT1G1 LTR MaLR 85 566 -29 3148 60 2 2 chr15 24913047 24913445 -60782309 + L1PA8A LINE L1 5706 6103 -28 340 275 143 68 chr15 24913489 24913979 -60781775 + L1ME4a LINE L1 5415 5933 -188 220 200 36 0 chr15 24915379 24915434 -60780320 + (TTAAA)n Simple_repeat Simple_repeat 3 59 0 235 230 81 58 chr15 24916811 24916898 -60778856 - MIR3 SINE MIR -38 170 82 329 231 15 0 chr15 24916993 24917058 -60778696 - MER45 DNA AcHobo 0 1581 1516 279 153 136 0 chr15 24917049 24917108 -60778646 - MER45 DNA AcHobo -914 126 60 * 204 125 0 0 chr15 24917247 24917279 -60778475 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 368 298 40 0 chr15 24917732 24917856 -60777898 - MIR SINE MIR -32 230 102 927 258 166 26 chr15 24918959 24919350 -60776404 + MLT1L LTR MaLR 163 608 -7 370 281 98 30 chr15 24919360 24919563 -60776191 - MIR SINE MIR -8 254 38 277 266 0 13 chr15 24919618 24919697 -60776057 + (TA)n Simple_repeat Simple_repeat 1 78 0 28 0 0 0 chr15 24921382 24921410 -60774344 + AT_rich Low_complexity Low_complexity 1 28 0 219 36 0 0 chr15 24921416 24921444 -60774310 + (CTAAA)n Simple_repeat Simple_repeat 3 30 0 187 344 16 0 chr15 24921458 24921522 -60774232 - L3 LINE CR1 -1 1576 1512 614 246 98 41 chr15 24922353 24922444 -60773310 + MIR SINE MIR 5 89 -173 2194 182 80 31 chr15 24922444 24922922 -60772832 + MLT1D LTR MaLR 1 501 -4 614 246 98 41 chr15 24922922 24923074 -60772680 + MIR SINE MIR 89 262 0 208 322 33 25 chr15 24923270 24923391 -60772363 - MIR SINE MIR -71 137 16 203 250 31 16 chr15 24924011 24924075 -60771679 + MER5A DNA MER1_type 125 189 0 405 333 45 11 chr15 24924093 24924270 -60771484 + MER5A DNA MER1_type 7 189 0 221 255 0 0 chr15 24924662 24924709 -60771045 + MIR SINE MIR 1 47 -215 782 268 25 29 chr15 24924736 24924975 -60770779 - MIR SINE MIR -11 251 14 708 225 54 59 chr15 24924972 24925194 -60770560 + MIR SINE MIR 40 260 -2 * 400 254 9 18 chr15 24925200 24925314 -60770440 + MIR SINE MIR 150 262 0 205 250 162 0 chr15 24926217 24926285 -60769469 - L2 LINE L2 -3 3269 3191 187 129 0 0 chr15 24926750 24926781 -60768973 + L2 LINE L2 3280 3310 -3 360 289 36 129 chr15 24926867 24927255 -60768499 + L2 LINE L2 2921 3272 0 665 355 16 0 chr15 24928477 24928722 -60767032 + MIR SINE MIR 13 261 -1 222 37 0 0 chr15 24931228 24931255 -60764499 + (A)n Simple_repeat Simple_repeat 1 27 0 423 0 0 0 chr15 24933633 24933680 -60762074 + (CA)n Simple_repeat Simple_repeat 2 48 0 252 0 0 0 chr15 24933717 24933745 -60762009 + (CA)n Simple_repeat Simple_repeat 1 28 0 180 0 0 0 chr15 24933983 24934003 -60761751 + (CAG)n Simple_repeat Simple_repeat 3 22 0 21 0 0 0 chr15 24934156 24934177 -60761577 + GC_rich Low_complexity Low_complexity 1 21 0 339 291 120 8 chr15 24936545 24936662 -60759092 + L2 LINE L2 3139 3268 -4 213 212 242 0 chr15 24936748 24936814 -60758940 + L2 LINE L2 3190 3271 -1 668 242 65 32 chr15 24937081 24937267 -60758487 - MIR SINE MIR -21 241 50 653 309 15 0 chr15 24937347 24937551 -60758203 + MIR SINE MIR 46 252 -10 231 338 123 32 chr15 24939017 24939171 -60756583 - MIR SINE MIR -75 187 20 2837 0 0 3 chr15 24940181 24940485 -60755269 - AluYa5 SINE Alu -8 303 1 207 69 0 0 chr15 24940904 24940933 -60754821 + (TG)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr15 24941325 24941349 -60754405 + AT_rich Low_complexity Low_complexity 1 24 0 206 222 0 0 chr15 24941936 24941981 -60753773 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 1179 286 98 19 chr15 24942078 24942547 -60753207 - LTR33 LTR ERVL -2 519 14 279 313 96 30 chr15 24942566 24942715 -60753039 - MIR SINE MIR -63 145 23 291 93 0 0 chr15 24944773 24944816 -60750938 + (GA)n Simple_repeat Simple_repeat 1 43 0 197 222 241 0 chr15 24946431 24946485 -60749269 + L2 LINE L2 3244 3310 -3 1834 137 27 27 chr15 24946784 24947076 -60748678 - AluJb SINE Alu -20 292 1 21 0 0 0 chr15 24947159 24947180 -60748574 + AT_rich Low_complexity Low_complexity 1 21 0 825 188 0 0 chr15 24947227 24947360 -60748394 + FLAM_C SINE Alu 1 133 -10 4630 142 22 4 chr15 24948511 24949314 -60746440 - L1MC1 LINE L1 -197 6136 5319 2414 209 96 105 chr15 24949819 24949854 -60745900 - L1MC1 LINE L1 -812 5359 5325 2048 156 13 0 chr15 24949854 24950227 -60745527 - L1MA8 LINE L1 0 6291 5914 2414 209 96 105 chr15 24950227 24950764 -60744990 - L1MC1 LINE L1 -846 5325 4785 668 173 0 0 chr15 24950764 24950868 -60744886 - FLAM_A SINE Alu -37 105 2 2414 209 96 105 chr15 24950868 24950944 -60744810 - L1MC1 LINE L1 -1386 4785 4710 191 36 36 0 chr15 24950944 24950972 -60744782 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1480 173 0 39 chr15 24950977 24951231 -60744523 - AluJo SINE Alu -30 282 39 2414 209 96 105 chr15 24951231 24951783 -60743971 - L1MC1 LINE L1 -1465 4706 4060 527 316 64 11 chr15 24952062 24952249 -60743505 + MIR SINE MIR 57 253 -9 444 296 53 0 chr15 24952692 24952844 -60742910 + MER117 DNA MER1_type 28 187 -10 386 303 56 43 chr15 24953465 24953627 -60742127 - MIR3 SINE MIR -13 195 32 302 313 31 31 chr15 24954718 24954846 -60740908 + MIR SINE MIR 26 153 -109 311 121 17 0 chr15 24955957 24956015 -60739739 + (TG)n Simple_repeat Simple_repeat 2 60 0 774 261 0 5 chr15 24957272 24957460 -60738294 - MER5A DNA MER1_type -1 188 2 517 226 28 66 chr15 24957478 24957554 -60738200 - MER5B DNA MER1_type -4 174 97 1544 180 10 33 chr15 24957554 24957860 -60737894 - AluJo SINE Alu -13 299 1 517 226 28 66 chr15 24957860 24957964 -60737790 - MER5B DNA MER1_type -81 97 1 1842 174 0 82 chr15 24958087 24958512 -60737242 - MLT1B LTR MaLR 0 390 1 503 358 201 16 chr15 24959388 24959771 -60735983 + L2 LINE L2 2860 3313 0 201 322 230 6 chr15 24959863 24960037 -60735717 - MIR SINE MIR -14 248 36 1247 194 84 0 chr15 24960291 24960600 -60735154 + L1MC4a LINE L1 7228 7562 -246 297 239 44 18 chr15 24960604 24960717 -60735037 + L1MD3 LINE L1 7870 7985 -10 298 315 115 0 chr15 24962704 24962834 -60732920 - MIR3 SINE MIR -32 176 32 305 339 47 0 chr15 24962888 24963015 -60732739 - L3 LINE CR1 -4 1573 1441 231 341 213 27 chr15 24963048 24963376 -60732378 - L3 LINE CR1 -276 1301 913 * 655 320 111 53 chr15 24963373 24964298 -60731456 + L2 LINE L2 2154 3247 -25 251 323 51 41 chr15 24964319 24964426 -60731328 - L3 LINE CR1 -742 835 724 1884 179 3 0 chr15 24964426 24964728 -60731026 - AluJo SINE Alu -9 303 1 251 323 51 41 chr15 24964728 24964815 -60730939 - L3 LINE CR1 -853 724 639 194 207 0 207 chr15 24966559 24966670 -60729084 + L2 LINE L2 3185 3272 0 492 260 8 16 chr15 24966877 24967000 -60728754 - L2 LINE L2 0 3313 3192 22 56 0 0 chr15 24967116 24967152 -60728602 + AT_rich Low_complexity Low_complexity 1 36 0 209 233 0 17 chr15 24967221 24967281 -60728473 + (TTA)n Simple_repeat Simple_repeat 1 59 0 1911 163 9 9 chr15 24968104 24968453 -60727301 + L1PB4 LINE L1 5807 6155 -1 2316 78 0 0 chr15 24969046 24969342 -60726412 + AluY SINE Alu 1 296 -15 198 103 0 0 chr15 24969864 24969893 -60725861 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 4705 148 19 19 chr15 24969897 24970847 -60724907 - L1MB1 LINE L1 0 6168 5219 195 69 0 0 chr15 24971898 24971927 -60723827 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 424 291 6 85 chr15 24972145 24972310 -60723444 - MIR3 SINE MIR -34 174 23 265 264 166 43 chr15 24972536 24972699 -60723055 + MIR SINE MIR 18 200 -62 193 329 0 0 chr15 24972739 24972812 -60722942 + MIR SINE MIR 188 260 -2 442 286 34 27 chr15 24972908 24973055 -60722699 + MIR SINE MIR 65 212 -50 306 302 5 116 chr15 24973188 24973377 -60722377 + MIR3 SINE MIR 31 198 -10 275 283 22 22 chr15 24973799 24973891 -60721863 - MIR3 SINE MIR -35 173 82 1171 247 117 43 chr15 24973924 24974313 -60721441 + MLT1G1 LTR MaLR 1 445 -150 2183 145 18 0 chr15 24974313 24974644 -60721110 + MER1B DNA MER1_type 1 337 0 1171 247 117 43 chr15 24974644 24974808 -60720946 + MLT1G1 LTR MaLR 445 595 0 322 260 31 10 chr15 24975000 24975096 -60720658 + MLT1J LTR MaLR 117 214 -297 806 253 118 53 chr15 24975235 24975725 -60720029 - LTR33A LTR ERVL 0 523 2 1736 186 55 42 chr15 24975919 24976301 -60719453 - MLT1B LTR MaLR -3 387 1 645 233 119 0 chr15 24979266 24979442 -60716312 + MIR SINE MIR 2 198 -64 246 264 19 47 chr15 24979443 24979549 -60716205 + MIR SINE MIR 160 262 0 230 296 174 31 chr15 24981364 24981560 -60714194 - L2 LINE L2 -177 3095 2872 336 321 82 15 chr15 24982066 24982200 -60713554 - L2 LINE L2 -3 3269 3127 356 234 101 62 chr15 24982340 24982567 -60713187 + L1MC4 LINE L1 7807 8042 0 1563 175 144 3 chr15 24983678 24983998 -60711756 + MLT1A1 LTR MaLR 1 365 0 1400 261 19 5 chr15 24984265 24984636 -60711118 - MLT1G LTR MaLR -1 589 214 2324 108 0 0 chr15 24985688 24985984 -60709770 - AluSx SINE Alu -14 298 3 225 316 0 20 chr15 24986105 24986203 -60709551 + A-rich Low_complexity Low_complexity 4 99 0 210 254 0 36 chr15 24987114 24987169 -60708585 + L2 LINE L2 3245 3297 -16 362 343 34 27 chr15 24987538 24987684 -60708070 + MIR3 SINE MIR 16 162 -46 279 0 0 0 chr15 24988625 24988656 -60707098 + (TG)n Simple_repeat Simple_repeat 1 31 0 256 271 43 87 chr15 24991026 24991233 -60704521 - L1MC4a LINE L1 -1897 5911 5714 244 290 171 0 chr15 24991605 24991781 -60703973 - L1MC4a LINE L1 -2280 5528 5323 420 328 152 37 chr15 24991791 24992636 -60703118 - L1MC4a LINE L1 -856 5290 4349 216 184 0 0 chr15 24992636 24992685 -60703069 + (TG)n Simple_repeat Simple_repeat 1 49 0 298 206 0 14 chr15 24993011 24993084 -60702670 + HsTC2 DNA Tc2 7 78 -1820 2548 65 3 0 chr15 24993475 24993784 -60701970 + AluY SINE Alu 2 311 0 21 0 0 0 chr15 24994990 24995011 -60700743 + AT_rich Low_complexity Low_complexity 1 21 0 3250 201 41 2 chr15 24995102 24995730 -60700024 + MER82 DNA MER2_type 1 653 0 211 256 0 0 chr15 24995746 24995789 -60699965 - MIR SINE MIR -110 152 110 550 250 39 50 chr15 24996126 24996306 -60699448 + MER5B DNA MER1_type 1 178 0 2148 143 36 52 chr15 24996405 24996557 -60699197 + Tigger2a DNA MER2_type 1 154 -2554 2211 194 7 21 chr15 24996557 24996989 -60698765 - MSTB LTR MaLR 0 426 1 2148 143 36 52 chr15 24996989 24997277 -60698477 + Tigger2a DNA MER2_type 154 434 0 411 284 18 0 chr15 24997484 24997593 -60698161 + L2 LINE L2 3154 3264 -8 1678 185 21 3 chr15 25000085 25000371 -60695383 - AluJo SINE Alu -19 293 3 205 321 57 70 chr15 25000679 25000894 -60694860 + MIR SINE MIR 3 205 -41 308 269 41 8 chr15 25001286 25001458 -60694296 + MIR SINE MIR 45 258 -4 252 200 0 0 chr15 25001794 25001849 -60693905 + CT-rich Low_complexity Low_complexity 2 56 0 968 179 0 0 chr15 25001849 25002005 -60693749 - FAM SINE Alu -19 156 1 234 217 50 0 chr15 25002474 25002534 -60693220 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 4165 142 115 21 chr15 25002535 25002994 -60692760 - MER6 DNA MER2_type 0 865 450 243 0 0 0 chr15 25002994 25003021 -60692733 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 4165 142 115 21 chr15 25003021 25003352 -60692402 - MER6 DNA MER2_type -415 450 1 4308 170 30 7 chr15 25005161 25005983 -60689771 + MER21B LTR ERV1 1 841 -22 1034 204 121 44 chr15 25006710 25007049 -60688705 - MLT1A1 LTR MaLR 0 365 1 217 174 22 43 chr15 25007401 25007447 -60688307 - MER5B DNA MER1_type -99 79 35 2303 129 13 3 chr15 25007498 25007877 -60687877 + L1MA5 LINE L1 5912 6294 -6 361 301 187 0 chr15 25007911 25008034 -60687720 + MER5A DNA MER1_type 38 183 -6 213 269 0 0 chr15 25008478 25008556 -60687198 + (TCTCTG)n Simple_repeat Simple_repeat 4 81 0 188 313 76 83 chr15 25008842 25008986 -60686768 + L2 LINE L2 3044 3186 -86 393 293 24 0 chr15 25009134 25009257 -60686497 + MIR3 SINE MIR 82 207 -1 353 257 0 0 chr15 25009442 25009512 -60686242 - L2 LINE L2 -4 3309 3240 231 103 0 0 chr15 25010062 25010101 -60685653 + (GA)n Simple_repeat Simple_repeat 2 40 0 815 170 72 5 chr15 25011330 25011524 -60684230 - L1MC2 LINE L1 -1 6343 6137 4022 161 13 10 chr15 25011528 25012315 -60683439 - L1MC3 LINE L1 -195 7590 6802 386 242 16 36 chr15 25015278 25015408 -60680346 - L1MD2 LINE L1 -56 6110 5991 24 0 0 0 chr15 25015519 25015543 -60680211 + AT_rich Low_complexity Low_complexity 1 24 0 557 234 42 24 chr15 25015780 25015947 -60679807 - MER21B LTR ERV1 -113 750 581 731 253 135 32 chr15 25015958 25016337 -60679417 + MER74B LTR ERVL 66 483 -139 635 286 50 40 chr15 25016340 25016807 -60678947 + L1MDa LINE L1 122 985 -5555 247 252 41 88 chr15 25017013 25017160 -60678594 + L1MD2 LINE L1 489 628 -5912 5220 242 108 46 chr15 25017360 25019653 -60676101 + L1MD2 LINE L1 1118 3268 -3485 1042 199 168 65 chr15 25019653 25020111 -60675643 - MLT1D LTR MaLR 0 505 1 5220 242 108 46 chr15 25020111 25021208 -60674546 + L1MD2 LINE L1 3268 4296 -2457 4450 158 45 9 chr15 25021208 25022068 -60673686 + L1MA4A LINE L1 5413 6303 0 5220 242 108 46 chr15 25022068 25023882 -60671872 + L1MD2 LINE L1 4296 6750 -3 473 313 72 10 chr15 25023900 25024095 -60671659 - MIR SINE MIR -10 252 46 233 276 31 10 chr15 25025559 25025657 -60670097 + Charlie7 DNA MER1_type 5 104 -2508 * 237 211 101 18 chr15 25025651 25025760 -60669994 + Charlie7 DNA MER1_type 2440 2557 -55 228 35 0 0 chr15 25025778 25025807 -60669947 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1118 141 61 50 chr15 25025847 25026045 -60669709 - AluJb SINE Alu -112 200 1 246 356 95 30 chr15 25026763 25027058 -60668696 - L3 LINE CR1 -597 980 667 364 336 83 43 chr15 25027217 25027665 -60668089 - L2 LINE L2 -177 3095 2642 304 376 44 17 chr15 25027810 25027991 -60667763 - L3 LINE CR1 -1144 433 248 502 220 53 15 chr15 25028055 25028187 -60667567 + MIR SINE MIR 116 252 -10 566 305 42 8 chr15 25028711 25028950 -60666804 + LTR16A1 LTR ERVL 209 455 -2 369 372 33 28 chr15 25029593 25029808 -60665946 - MIR SINE MIR 0 262 47 185 277 48 24 chr15 25029871 25029954 -60665800 - MIR SINE MIR -139 123 39 261 83 0 0 chr15 25030770 25030806 -60664948 + (TA)n Simple_repeat Simple_repeat 2 37 0 266 309 67 47 chr15 25031301 25031450 -60664304 + L3 LINE CR1 951 1102 -475 776 158 60 27 chr15 25031787 25031970 -60663784 - MER5A DNA MER1_type 0 189 1 263 256 49 0 chr15 25032611 25032693 -60663061 - MIR SINE MIR -57 205 120 211 179 90 60 chr15 25033349 25033416 -60662338 - MIR SINE MIR -111 151 83 599 230 113 31 chr15 25033641 25033863 -60661891 - MIR SINE MIR 0 262 23 2230 112 0 20 chr15 25035030 25035335 -60660419 + AluSc SINE Alu 1 299 -10 1048 149 40 0 chr15 25036087 25036288 -60659466 + MER2 DNA MER2_type 2 210 -135 21 36 0 0 chr15 25036296 25036324 -60659430 + AT_rich Low_complexity Low_complexity 1 28 0 181 216 0 39 chr15 25036480 25036531 -60659223 + L2 LINE L2 3264 3312 -1 630 264 24 6 chr15 25036582 25036749 -60659005 - MIR SINE MIR -64 198 29 2196 52 39 52 chr15 25037553 25037859 -60657895 + AluY SINE Alu 1 302 -9 472 333 25 10 chr15 25037965 25038169 -60657585 + L2 LINE L2 3104 3310 -3 28 0 0 0 chr15 25038719 25038747 -60657007 + AT_rich Low_complexity Low_complexity 1 28 0 181 211 118 26 chr15 25038807 25038883 -60656871 - L2 LINE L2 -1 3312 3230 396 261 213 46 chr15 25039865 25040194 -60655560 - L1ME4a LINE L1 -2 6119 5736 432 104 0 0 chr15 25040288 25040355 -60655399 + (TG)n Simple_repeat Simple_repeat 2 68 0 356 348 82 11 chr15 25044014 25044198 -60651556 + MIR3 SINE MIR 2 198 -10 884 204 0 6 chr15 25044858 25045025 -60650729 + MLT1F1 LTR MaLR 5 170 -372 2120 215 54 57 chr15 25045399 25046065 -60649689 + MER21B LTR ERV1 78 741 -122 1276 235 75 8 chr15 25046125 25046487 -60649267 + MLT1F1 LTR MaLR 182 567 0 1884 93 0 56 chr15 25046491 25046760 -60648994 + AluY SINE Alu 1 254 -57 314 319 42 28 chr15 25047929 25048073 -60647681 - MIR3 SINE MIR -57 151 6 366 91 0 0 chr15 25050495 25050550 -60645204 + (TC)n Simple_repeat Simple_repeat 2 56 0 207 0 0 0 chr15 25051073 25051096 -60644658 + (TTG)n Simple_repeat Simple_repeat 2 24 0 277 310 64 70 chr15 25052450 25052637 -60643117 - MER5A DNA MER1_type -1 188 3 216 345 23 23 chr15 25052958 25053045 -60642709 - MIR3 SINE MIR -21 187 101 21 36 0 0 chr15 25053660 25053688 -60642066 + AT_rich Low_complexity Low_complexity 1 28 0 5745 167 51 14 chr15 25053688 25053747 -60642007 - L1MA7 LINE L1 0 6291 6236 193 57 57 0 chr15 25053747 25053782 -60641972 + (TA)n Simple_repeat Simple_repeat 2 38 0 5745 167 51 14 chr15 25053782 25055760 -60639994 - L1MA7 LINE L1 -55 6236 4067 3080 188 21 20 chr15 25055759 25056457 -60639297 + L1MA7 LINE L1 3356 4054 -2092 * 356 328 25 102 chr15 25056742 25056986 -60638768 + L2 LINE L2 2957 3181 -91 2544 148 39 2 chr15 25057597 25058010 -60637744 + MSTA LTR MaLR 1 428 0 2456 77 0 6 chr15 25058191 25058504 -60637250 - AluY SINE Alu 0 311 1 191 317 31 114 chr15 25059678 25060003 -60635751 + L2 LINE L2 1279 1576 -1738 458 226 70 75 chr15 25060016 25060262 -60635492 + MLT1H1 LTR MaLR 129 362 -180 1299 212 34 69 chr15 25060262 25060640 -60635114 + MLT1A1 LTR MaLR 1 365 0 458 226 70 75 chr15 25060640 25060690 -60635064 + MLT1H1 LTR MaLR 362 411 -131 1531 193 47 99 chr15 25060690 25061086 -60634668 - MLT1C LTR MaLR 0 467 99 3883 49 0 0 chr15 25061086 25061558 -60634196 - L1PA6 LINE L1 -2 6152 5681 1531 193 47 99 chr15 25061558 25061648 -60634106 - MLT1C LTR MaLR -368 99 6 302 219 114 18 chr15 25061664 25061778 -60633976 + MLT1H1 LTR MaLR 429 553 -2 364 307 39 0 chr15 25061782 25061909 -60633845 + L2 LINE L2 1812 1943 -1371 1134 149 27 40 chr15 25062561 25062783 -60632971 - MER20 DNA MER1_type 0 219 1 715 209 99 6 chr15 25063881 25064053 -60631701 + MER58A DNA MER1_type 34 221 -3 421 282 80 31 chr15 25065764 25065927 -60629827 + MIR SINE MIR 92 262 0 198 250 19 19 chr15 25066689 25066741 -60629013 - L3 LINE CR1 -2 1575 1524 194 259 58 101 chr15 25067171 25067186 -60628568 - L2 LINE L2 0 3313 3299 2035 123 0 0 chr15 25067186 25067462 -60628292 - AluSq SINE Alu -13 300 25 194 259 58 101 chr15 25067462 25067585 -60628169 - L2 LINE L2 -14 3299 3181 366 322 38 44 chr15 25068305 25068488 -60627266 - MER5A DNA MER1_type 0 189 8 328 292 42 17 chr15 25068512 25068632 -60627122 + L2 LINE L2 3191 3313 0 232 254 16 0 chr15 25069763 25069826 -60625928 + MIR SINE MIR 87 150 -58 610 274 86 65 chr15 25069845 25070272 -60625482 + L2 LINE L2 2736 3179 -134 585 200 67 7 chr15 25070858 25070993 -60624761 + L2 LINE L2 3171 3313 0 2386 96 0 0 chr15 25072185 25072486 -60623268 + AluSx SINE Alu 1 301 -11 189 283 33 33 chr15 25072486 25072546 -60623208 + MER5A DNA MER1_type 66 125 -64 615 314 88 7 chr15 25073405 25073659 -60622095 + MIR SINE MIR 10 262 0 198 302 0 16 chr15 25074940 25075003 -60620751 - MIR3 SINE MIR 0 208 147 2082 124 0 0 chr15 25075943 25076233 -60619521 - AluY SINE Alu -5 306 17 255 339 139 9 chr15 25077495 25077610 -60618144 - MIR SINE MIR -102 160 31 27 0 0 0 chr15 25078713 25078740 -60617014 + AT_rich Low_complexity Low_complexity 1 27 0 243 342 105 0 chr15 25078761 25078875 -60616879 + L2 LINE L2 3188 3313 0 31 0 0 0 chr15 25078889 25078920 -60616834 + AT_rich Low_complexity Low_complexity 1 31 0 221 241 19 0 chr15 25079002 25079056 -60616698 + (TG)n Simple_repeat Simple_repeat 1 55 0 23 0 0 0 chr15 25079364 25079387 -60616367 + AT_rich Low_complexity Low_complexity 1 23 0 203 59 0 29 chr15 25079832 25079866 -60615888 + (CA)n Simple_repeat Simple_repeat 2 34 0 2211 102 0 3 chr15 25081613 25081908 -60613846 - AluSx SINE Alu -18 294 1 180 135 0 0 chr15 25082781 25082818 -60612936 + (TAA)n Simple_repeat Simple_repeat 3 39 0 180 0 0 0 chr15 25083177 25083197 -60612557 + (TAATG)n Simple_repeat Simple_repeat 1 20 0 307 349 59 20 chr15 25083246 25083398 -60612356 - L1ME LINE L1 -310 5852 5695 264 83 0 117 chr15 25083444 25083504 -60612250 + MADE1 DNA Mariner 1 53 -27 325 296 89 17 chr15 25083520 25083811 -60611943 - L1ME LINE L1 -558 5612 5301 186 143 0 0 chr15 25083821 25083856 -60611898 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 404 344 113 31 chr15 25083856 25084246 -60611508 - L2 LINE L2 0 3313 2892 471 340 46 5 chr15 25084849 25085043 -60610711 - MIR SINE MIR -4 258 57 261 235 13 180 chr15 25085478 25085639 -60610115 - MIR SINE MIR 0 208 74 400 272 9 0 chr15 25086040 25086154 -60609600 - MER46C DNA MER2_type -2 336 222 1242 209 154 138 chr15 25086161 25087053 -60608701 - LTR1B LTR ERV1 0 1020 1 803 193 57 70 chr15 25087053 25087273 -60608481 - MER46C DNA MER2_type -120 218 2 268 258 93 0 chr15 25087287 25087384 -60608370 - MIR SINE MIR -108 154 49 2421 229 71 27 chr15 25088371 25089738 -60606016 - L1ME1 LINE L1 -41 6936 5433 28 61 0 0 chr15 25089909 25089958 -60605796 + AT_rich Low_complexity Low_complexity 1 49 0 25 75 0 0 chr15 25090074 25090127 -60605627 + AT_rich Low_complexity Low_complexity 1 53 0 1972 245 76 32 chr15 25090142 25090634 -60605120 - L1ME1 LINE L1 -4592 2367 1898 1388 194 148 17 chr15 25090634 25091047 -60604707 - MLT1C LTR MaLR 0 467 1 1972 245 76 32 chr15 25091047 25091691 -60604063 - L1ME1 LINE L1 -5061 1898 1206 467 310 37 29 chr15 25092222 25092467 -60603287 - L1ME1 LINE L1 -6612 247 1 266 349 18 0 chr15 25093504 25093613 -60602141 - MIR3 SINE MIR -5 203 93 316 331 69 0 chr15 25094629 25094774 -60600980 - MIR SINE MIR -35 227 73 180 318 0 0 chr15 25095168 25095212 -60600542 + L2 LINE L2 3204 3247 -25 243 224 0 0 chr15 25095312 25095370 -60600384 + L1ME4a LINE L1 5865 5922 -199 475 281 79 37 chr15 25095954 25096118 -60599636 + MER5A DNA MER1_type 7 177 -12 544 302 74 21 chr15 25097431 25097673 -60598081 + MIR SINE MIR 2 256 -6 208 337 56 0 chr15 25097687 25097776 -60597978 - L3 LINE CR1 -410 1167 1074 1978 116 11 11 chr15 25098483 25098767 -60596987 + AluSx SINE Alu 1 284 -28 789 101 0 0 chr15 25098767 25098906 -60596848 + (TA)n Simple_repeat Simple_repeat 1 139 0 297 0 0 0 chr15 25099128 25099161 -60596593 + (TG)n Simple_repeat Simple_repeat 2 34 0 243 203 0 0 chr15 25099163 25099222 -60596532 + (CA)n Simple_repeat Simple_repeat 2 60 0 660 309 48 35 chr15 25099401 25099799 -60595955 - L1ME4a LINE L1 -195 5926 5524 243 0 0 0 chr15 25099986 25100013 -60595741 + (CA)n Simple_repeat Simple_repeat 2 28 0 201 195 0 0 chr15 25102929 25102970 -60592784 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 189 348 27 45 chr15 25105298 25105410 -60590344 + MIR SINE MIR 37 146 -62 208 373 0 0 chr15 25107207 25107274 -60588480 + L2 LINE L2 3224 3290 -23 21 0 0 0 chr15 25107574 25107595 -60588159 + AT_rich Low_complexity Low_complexity 1 21 0 314 313 61 71 chr15 25107935 25108099 -60587655 - MIR3 SINE MIR -9 199 36 2417 118 22 0 chr15 25108099 25108455 -60587299 - THE1B LTR MaLR 0 364 1 314 313 61 71 chr15 25108455 25108488 -60587266 - MIR3 SINE MIR -172 36 4 492 305 58 70 chr15 25108514 25108773 -60586981 - L2 LINE L2 -5 3267 3012 197 167 67 67 chr15 25110535 25110595 -60585159 + L2 LINE L2 3173 3232 -81 228 344 68 47 chr15 25110738 25110930 -60584824 + L2 LINE L2 2867 3062 -210 246 32 0 0 chr15 25111614 25111645 -60584109 + (CA)n Simple_repeat Simple_repeat 2 32 0 1948 85 8 0 chr15 25112005 25112283 -60583471 + AluSc SINE Alu 39 318 0 180 373 45 0 chr15 25113369 25113436 -60582318 - L2 LINE L2 -5 3308 3239 690 239 46 46 chr15 25116242 25116481 -60579273 + MIR SINE MIR 9 247 -15 233 210 0 0 chr15 25116558 25116620 -60579134 + T-rich Low_complexity Low_complexity 1 62 0 23 33 0 0 chr15 25117134 25117164 -60578590 + AT_rich Low_complexity Low_complexity 1 30 0 1885 127 34 17 chr15 25117207 25117499 -60578255 + AluSx SINE Alu 1 297 -15 183 100 0 0 chr15 25118708 25118738 -60577016 + (CAT)n Simple_repeat Simple_repeat 3 32 0 248 74 481 0 chr15 25119708 25119762 -60575992 - MADE1 DNA Mariner 0 80 1 798 275 18 18 chr15 25120698 25120927 -60574827 - MIR SINE MIR 0 262 34 439 78 0 104 chr15 25122265 25122342 -60573412 + Tigger2 DNA MER2_type 1 69 -2649 * 1822 117 22 6 chr15 25122340 25122656 -60573098 + Tigger2 DNA MER2_type 2280 2600 -118 1070 188 50 0 chr15 25122655 25122894 -60572860 + Tigger2 DNA MER2_type 2456 2706 -12 * 536 231 94 6 chr15 25122918 25123078 -60572676 + MLT1J LTR MaLR 87 260 -251 2254 86 0 7 chr15 25124656 25124946 -60570808 + AluSg SINE Alu 1 288 -22 196 50 0 50 chr15 25125780 25125820 -60569934 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 184 374 30 20 chr15 25125941 25126040 -60569714 - L3 LINE CR1 -2 1575 1476 215 216 0 20 chr15 25126164 25126215 -60569539 + GA-rich Low_complexity Low_complexity 5 54 0 386 266 65 49 chr15 25128466 25128650 -60567104 + LTR33 LTR ERVL 32 218 -303 595 276 12 6 chr15 25128749 25128919 -60566835 + LTR33 LTR ERVL 347 517 -4 246 393 29 21 chr15 25129196 25129336 -60566418 - L2 LINE L2 -44 3228 3088 2589 47 0 0 chr15 25129688 25129989 -60565765 - AluY SINE Alu -10 301 1 281 318 63 16 chr15 25130160 25130286 -60565468 - L2 LINE L2 0 3313 3182 1500 197 20 0 chr15 25132256 25132556 -60563198 + Tigger3b DNA MER2_type 1 306 -925 1157 99 0 13 chr15 25132598 25132750 -60563004 - AluSq/x SINE Alu -163 150 1 1273 109 15 10 chr15 25132750 25132951 -60562803 + Tigger3b DNA MER2_type 294 495 -736 * 1800 179 87 0 chr15 25132949 25133295 -60562459 + Tigger3b DNA MER2_type 857 1232 0 198 71 0 0 chr15 25134289 25134317 -60561437 + (CA)n Simple_repeat Simple_repeat 2 29 0 1414 259 71 112 chr15 25136189 25137439 -60558315 - L2 LINE L2 0 3313 2118 272 299 16 110 chr15 25139265 25139392 -60556362 - MER91C DNA MER1_type -2 138 24 402 383 18 6 chr15 25140053 25140220 -60555534 + MIR3 SINE MIR 2 170 -38 182 359 56 61 chr15 25140875 25141106 -60554648 + L2 LINE L2 3043 3272 0 2186 153 3 12 chr15 25141166 25141506 -60554248 - MER1B DNA MER1_type 0 337 1 708 238 99 0 chr15 25141662 25141834 -60553920 - MER5A DNA MER1_type 0 189 1 705 268 93 5 chr15 25142648 25142853 -60552901 - MIR SINE MIR -33 229 7 188 224 102 0 chr15 25142963 25142978 -60552776 - L2 LINE L2 -1 3312 3259 189 235 0 0 chr15 25142978 25143012 -60552742 - MIR SINE MIR -15 247 214 426 20 0 0 chr15 25144949 25145000 -60550754 + (TG)n Simple_repeat Simple_repeat 2 52 0 327 224 7 84 chr15 25145734 25145877 -60549877 - L1MC4 LINE L1 -3 8039 7908 400 274 65 10 chr15 25145917 25146118 -60549636 - L1MC4 LINE L1 -139 7903 7692 214 276 13 40 chr15 25146306 25146382 -60549372 - MIR SINE MIR -106 102 29 252 59 0 0 chr15 25147862 25147896 -60547858 + (TG)n Simple_repeat Simple_repeat 1 34 0 226 365 37 19 chr15 25150898 25151005 -60544749 + MER5A DNA MER1_type 66 174 -15 23 0 0 0 chr15 25151075 25151098 -60544656 + AT_rich Low_complexity Low_complexity 1 23 0 36 0 0 0 chr15 25151163 25151199 -60544555 + AT_rich Low_complexity Low_complexity 1 36 0 307 357 83 10 chr15 25152356 25152549 -60543205 + MIR SINE MIR 45 250 -12 288 0 0 0 chr15 25156752 25156784 -60538970 + (TG)n Simple_repeat Simple_repeat 2 33 0 207 0 0 0 chr15 25156794 25156817 -60538937 + (TA)n Simple_repeat Simple_repeat 2 24 0 463 316 165 5 chr15 25157726 25157944 -60537810 + MIR SINE MIR 2 254 -8 469 288 21 30 chr15 25160102 25160338 -60535416 - L1ME3A LINE L1 -219 5951 5718 544 309 21 42 chr15 25160610 25161022 -60534732 - L1ME3A LINE L1 -559 5603 5199 2151 110 0 3 chr15 25161022 25161304 -60534450 - AluSg SINE Alu -27 283 3 544 309 21 42 chr15 25161304 25161371 -60534383 - L1ME3A LINE L1 -963 5199 5132 346 282 84 14 chr15 25161411 25161553 -60534201 - L2 LINE L2 -15 3298 3147 2300 96 0 0 chr15 25161718 25162011 -60533743 + AluSx SINE Alu 1 293 -19 455 301 51 37 chr15 25162504 25162808 -60532946 + L2 LINE L2 2713 3018 -254 226 226 66 80 chr15 25162925 25163062 -60532692 + L1MC/D LINE L1 5776 5910 -1898 373 319 64 19 chr15 25163315 25163472 -60532282 + L1ME4a LINE L1 4756 4919 -1227 23 68 0 0 chr15 25163549 25163593 -60532161 + AT_rich Low_complexity Low_complexity 1 44 0 245 259 76 68 chr15 25163717 25163953 -60531801 + L1ME4a LINE L1 5726 5963 -158 226 333 0 0 chr15 25163955 25164036 -60531718 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 183 253 247 34 chr15 25164362 25164508 -60531246 + L2 LINE L2 3135 3311 -2 376 282 8 89 chr15 25168307 25168555 -60527199 + L2 LINE L2 3077 3304 -9 247 286 116 0 chr15 25168963 25169075 -60526679 + MER117 DNA MER1_type 30 154 -43 344 346 71 82 chr15 25170323 25170603 -60525151 - L2 LINE L2 -19 3253 2977 191 441 38 25 chr15 25170964 25171284 -60524470 - L2 LINE L2 -437 2877 2554 1694 186 37 3 chr15 25171289 25171585 -60524169 + AluJo SINE Alu 1 306 -6 2410 113 0 24 chr15 25172342 25172715 -60523039 + THE1B LTR MaLR 1 364 0 1882 135 10 20 chr15 25176291 25176607 -60519147 + AluSx SINE Alu 1 312 0 2253 95 3 7 chr15 25176977 25177273 -60518481 + AluSx SINE Alu 4 298 -14 817 134 70 0 chr15 25177838 25177995 -60517759 + L1MA4 LINE L1 6121 6288 -12 2126 138 0 0 chr15 25178129 25178427 -60517327 - AluSx SINE Alu -14 298 1 406 328 72 33 chr15 25178898 25179358 -60516396 + L1ME LINE L1 4312 4789 -1357 431 302 186 41 chr15 25179428 25179529 -60516225 - L3 LINE CR1 -614 963 878 1726 170 35 44 chr15 25179529 25179959 -60515795 - LTR37A LTR ERV1 0 426 1 431 302 186 41 chr15 25179959 25180148 -60515606 - L3 LINE CR1 -699 878 631 439 263 46 53 chr15 25180340 25180492 -60515262 - L2 LINE L2 -1 3271 3121 1150 284 81 10 chr15 25180991 25181588 -60514166 + L1ME LINE L1 5178 5810 -360 311 191 8 24 chr15 25181635 25181761 -60513993 + (TA)n Simple_repeat Simple_repeat 2 125 0 2544 119 51 0 chr15 25181761 25182174 -60513580 - MER57B LTR ERV1 0 434 1 248 0 31 0 chr15 25182174 25182206 -60513548 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 329 235 40 7 chr15 25182668 25182817 -60512937 + (TA)n Simple_repeat Simple_repeat 2 155 0 215 31 31 0 chr15 25182882 25182914 -60512840 + (TG)n Simple_repeat Simple_repeat 2 34 0 2681 109 5 36 chr15 25182928 25183370 -60512384 - L1PB1 LINE L1 0 6151 5724 22 0 0 0 chr15 25184693 25184715 -60511039 + AT_rich Low_complexity Low_complexity 1 22 0 214 158 26 118 chr15 25186793 25186846 -60508908 + MIR3 SINE MIR 108 153 -55 682 209 37 58 chr15 25186846 25187037 -60508717 + MER5A DNA MER1_type 3 189 0 374 141 28 0 chr15 25187459 25187530 -60508224 + CT-rich Low_complexity Low_complexity 3 75 0 1932 162 13 0 chr15 25187532 25187721 -60508033 - AluJb SINE Alu 0 312 116 270 0 0 0 chr15 25187721 25187751 -60508003 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1932 162 13 0 chr15 25187751 25187869 -60507885 - AluJb SINE Alu -196 116 1 21 0 0 0 chr15 25188372 25188393 -60507361 + AT_rich Low_complexity Low_complexity 1 21 0 306 344 33 8 chr15 25189816 25189938 -60505816 - MIR SINE MIR -65 143 19 1749 149 11 4 chr15 25190734 25190996 -60504758 + AluJb SINE Alu 1 264 -48 348 24 0 0 chr15 25191007 25191048 -60504706 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 924 220 5 5 chr15 25191210 25191396 -60504358 - MER5A DNA MER1_type -3 186 1 234 0 0 0 chr15 25191405 25191431 -60504323 + (T)n Simple_repeat Simple_repeat 1 26 0 502 263 150 19 chr15 25191884 25192044 -60503710 - MER5A DNA MER1_type 0 189 9 267 173 0 0 chr15 25192543 25192595 -60503159 + GA-rich Low_complexity Low_complexity 1 52 0 517 310 95 22 chr15 25192948 25193180 -60502574 - MIR SINE MIR -2 260 12 287 349 35 30 chr15 25193564 25193733 -60502021 + LTR67 LTR ERVL 31 200 -357 2347 101 0 7 chr15 25194735 25195042 -60500712 + AluSg SINE Alu 1 305 -5 204 274 10 88 chr15 25196454 25196556 -60499198 - MIR SINE MIR -25 237 144 403 288 144 0 chr15 25196815 25196926 -60498828 + MER5A DNA MER1_type 63 189 0 255 29 29 0 chr15 25196945 25196980 -60498774 - MLT1I LTR MaLR -3 406 371 22 0 0 0 chr15 25198231 25198253 -60497501 + AT_rich Low_complexity Low_complexity 1 22 0 269 155 17 0 chr15 25198253 25198311 -60497443 + (CA)n Simple_repeat Simple_repeat 2 60 0 235 195 117 13 chr15 25198477 25198554 -60497200 - MIR3 SINE MIR -23 185 101 224 222 101 0 chr15 25199685 25199756 -60495998 + MIR SINE MIR 114 193 -69 250 289 105 0 chr15 25199792 25199868 -60495886 + MIR SINE MIR 178 261 -1 589 258 64 61 chr15 25200982 25201277 -60494477 + LTR16A1 LTR ERVL 158 453 -4 240 320 124 0 chr15 25201388 25201485 -60494269 + L2 LINE L2 3128 3236 -36 236 192 260 0 chr15 25201579 25201652 -60494102 + MIR3 SINE MIR 112 203 -5 231 250 54 0 chr15 25201878 25201934 -60493820 - L2 LINE L2 -6 3307 3249 332 282 130 6 chr15 25201998 25202175 -60493579 - MIR SINE MIR -57 205 2 676 333 18 29 chr15 25203223 25203496 -60492258 - HAL1 LINE L1 -1783 724 455 368 304 95 12 chr15 25203664 25203832 -60491922 - HAL1 LINE L1 -2275 232 51 496 218 122 0 chr15 25204124 25204280 -60491474 + MIR SINE MIR 60 234 -28 185 192 58 19 chr15 25204251 25204303 -60491451 + L2 LINE L2 3251 3304 -9 * 422 318 140 0 chr15 25204818 25204997 -60490757 - L3 LINE CR1 -8 1569 1366 1079 190 25 10 chr15 25205229 25205429 -60490325 + MER20 DNA MER1_type 16 218 -1 214 384 8 24 chr15 25205436 25205561 -60490193 - L2 LINE L2 -226 3046 2924 198 329 138 24 chr15 25205617 25205784 -60489970 - L3 LINE CR1 -252 1325 1140 223 178 0 22 chr15 25207073 25207118 -60488636 + GA-rich Low_complexity Low_complexity 4 47 0 302 333 61 24 chr15 25207406 25207571 -60488183 - MER5B DNA MER1_type -7 171 1 384 292 53 0 chr15 25207689 25207802 -60487952 + MIR SINE MIR 28 146 -62 297 292 142 8 chr15 25208953 25209073 -60486681 + MIR SINE MIR 17 152 -56 250 200 12 118 chr15 25210123 25210208 -60485546 + L2 LINE L2 3235 3310 -3 509 333 157 33 chr15 25211113 25211931 -60483823 + L2 LINE L2 2349 3272 0 969 57 19 13 chr15 25212403 25212561 -60483193 + (TAGA)n Simple_repeat Simple_repeat 4 162 0 2030 198 8 16 chr15 25212916 25213284 -60482470 - MLT1A1 LTR MaLR 0 365 1 196 317 77 39 chr15 25213613 25213717 -60482037 - MIR SINE MIR -109 153 46 192 382 40 13 chr15 25213734 25213810 -60481944 - MIR3 SINE MIR -127 81 4 187 354 31 23 chr15 25215541 25215671 -60480083 - MIR SINE MIR -50 212 82 209 264 0 0 chr15 25217647 25217700 -60478054 - L2 LINE L2 -94 3219 3167 460 335 88 0 chr15 25217748 25217930 -60477824 - MIR SINE MIR -1 261 64 4715 149 16 34 chr15 25218012 25218200 -60477554 + L1MB8 LINE L1 5305 5495 -683 1713 191 0 16 chr15 25218200 25218503 -60477251 + AluJo SINE Alu 1 298 -14 4715 149 16 34 chr15 25218503 25218670 -60477084 + L1MB8 LINE L1 5495 5664 -514 2171 127 49 32 chr15 25218670 25219039 -60476715 + THE1C LTR MaLR 1 375 0 4715 149 16 34 chr15 25219039 25219566 -60476188 + L1MB8 LINE L1 5664 6172 -6 3194 115 44 78 chr15 25220222 25220754 -60475000 - Tigger3(Golem) DNA MER2_type 0 3029 2516 3715 66 0 0 chr15 25220754 25221194 -60474560 - L1PA7 LINE L1 -2 6152 5713 3194 115 44 78 chr15 25221194 25221254 -60474500 - Tigger3(Golem) DNA MER2_type -513 2516 2456 296 196 49 20 chr15 25221262 25221364 -60474390 + Zaphod DNA AcHobo 888 992 -3039 * 1890 186 51 35 chr15 25221361 25221790 -60473964 + Zaphod DNA AcHobo 3596 4031 0 300 351 56 82 chr15 25221836 25222155 -60473599 - L2 LINE L2 -19 3253 2943 206 339 56 44 chr15 25222190 25222441 -60473313 - L2 LINE L2 -468 2846 2593 3682 97 34 2 chr15 25222545 25223042 -60472712 + MER75 DNA T2_type 1 513 -1 617 355 92 28 chr15 25223086 25223512 -60472242 - L3 LINE CR1 -40 1537 1085 451 240 44 74 chr15 25223722 25223925 -60471829 + MIR SINE MIR 39 232 -30 482 118 94 0 chr15 25223929 25224014 -60471740 - MER53 DNA DNA 0 189 97 288 229 12 36 chr15 25224037 25224120 -60471634 + CT-rich Low_complexity Low_complexity 4 84 0 336 303 132 20 chr15 25224250 25224402 -60471352 + MIR SINE MIR 82 250 -12 2248 106 3 0 chr15 25227679 25227972 -60467782 - AluSp SINE Alu -19 294 1 532 297 113 5 chr15 25228594 25228779 -60466975 + MIR SINE MIR 25 229 -33 6662 150 47 3 chr15 25230837 25232161 -60463593 + L1MC1 LINE L1 4964 6332 -1 405 357 143 12 chr15 25232990 25233508 -60462246 - L2 LINE L2 -350 2964 2379 195 42 0 0 chr15 25234140 25234164 -60461590 + (TTG)n Simple_repeat Simple_repeat 3 26 0 396 275 140 42 chr15 25234174 25234410 -60461344 - MIR SINE MIR 0 262 4 263 244 128 12 chr15 25235888 25235974 -60459780 + MIR3 SINE MIR 77 172 -36 497 297 96 17 chr15 25236487 25236726 -60459028 - MIR SINE MIR -3 259 2 1015 275 55 50 chr15 25237104 25237622 -60458132 - MLT1G3 LTR MaLR -13 536 1 297 289 178 0 chr15 25237622 25237757 -60457997 + MIR SINE MIR 90 248 -14 180 0 0 0 chr15 25238300 25238320 -60457434 + (A)n Simple_repeat Simple_repeat 1 20 0 344 258 31 21 chr15 25239130 25239227 -60456527 - MIR SINE MIR -6 256 159 196 274 95 12 chr15 25241192 25241276 -60454478 - MIR SINE MIR -84 178 88 628 333 15 10 chr15 25241355 25241553 -60454201 - MIR SINE MIR -44 218 20 6430 75 0 0 chr15 25242028 25242839 -60452915 + L1PA8 LINE L1 5374 6184 0 336 115 0 0 chr15 25242992 25243044 -60452710 + L1MB1 LINE L1 6116 6167 -1 371 316 101 0 chr15 25243108 25243276 -60452478 + MIR SINE MIR 62 246 -16 228 219 0 0 chr15 25244079 25244120 -60451634 + MLT1I LTR MaLR 369 409 0 4468 154 15 24 chr15 25246492 25246665 -60449089 + L1P LINE L1 3432 3605 -2541 1814 45 0 58 chr15 25246665 25246907 -60448847 + L1PA4 LINE L1 5928 6155 0 4468 154 15 24 chr15 25246907 25247514 -60448240 + L1P LINE L1 3605 4205 -1941 561 220 200 13 chr15 25247618 25247768 -60447986 + MIR SINE MIR 77 254 -8 514 304 160 22 chr15 25247950 25248318 -60447436 + MLT1J2 LTR MaLR 1 419 -31 250 209 34 149 chr15 25248526 25248595 -60447159 + L1M3 LINE L1 4901 4946 -1200 2534 55 0 0 chr15 25248595 25248888 -60446866 - AluSc SINE Alu -16 293 1 250 209 34 149 chr15 25248888 25248966 -60446788 + L1M3 LINE L1 4946 5031 -1115 1917 168 5 45 chr15 25248979 25249354 -60446400 + L1M3 LINE L1 5308 5667 -513 861 268 99 47 chr15 25249880 25250112 -60445642 + MLT1H LTR MaLR 1 220 -329 1979 161 0 0 chr15 25250112 25250403 -60445351 + AluSx SINE Alu 5 295 -17 861 268 99 47 chr15 25250403 25250653 -60445101 + MLT1H LTR MaLR 220 549 0 274 332 37 74 chr15 25250783 25250973 -60444781 + MER5A DNA MER1_type 1 183 -6 192 375 98 0 chr15 25250981 25251093 -60444661 + L2 LINE L2 3150 3272 0 212 0 36 0 chr15 25252215 25252243 -60443511 + (CA)n Simple_repeat Simple_repeat 2 30 0 318 318 159 0 chr15 25252243 25252375 -60443379 - L1ME LINE L1 -462 5659 5507 532 280 106 5 chr15 25252701 25252890 -60442864 + MIR SINE MIR 49 256 -6 349 315 90 63 chr15 25252946 25253432 -60442322 - L1ME LINE L1 -1015 5131 4618 1056 298 79 33 chr15 25253432 25253862 -60441892 + LTR16A LTR ERVL 1 450 0 349 315 90 63 chr15 25253862 25254099 -60441655 - L1ME LINE L1 -1528 4618 4389 493 318 46 71 chr15 25254153 25254433 -60441321 + L3 LINE CR1 1266 1538 -39 836 254 18 0 chr15 25254791 25254960 -60440794 + MER58A DNA MER1_type 1 172 -52 323 378 31 0 chr15 25254998 25255125 -60440629 + MIR SINE MIR 6 136 -126 1071 273 135 16 chr15 25255186 25255505 -60440249 - LTR18A LTR ERVL 0 357 1 4230 144 65 1 chr15 25255506 25256152 -60439602 - HERVL18 LTR ERVL 0 6047 5361 2022 264 57 4 chr15 25256152 25256905 -60438849 + L1ME1 LINE L1 2846 3638 -2508 1624 191 71 45 chr15 25257052 25257434 -60438320 - MLT2B1 LTR ERVL -128 392 1 3525 206 95 47 chr15 25257441 25258626 -60437128 + L1ME1 LINE L1 4069 5310 -836 803 158 0 0 chr15 25258631 25258745 -60437009 + FLAM_C SINE Alu 5 118 -15 8778 69 0 1 chr15 25258745 25260602 -60435152 + L1PA7 LINE L1 4291 6148 -6 913 172 6 35 chr15 25260602 25260776 -60434978 + AluJb SINE Alu 134 302 -10 2858 221 84 27 chr15 25260777 25261528 -60434226 + L1ME1 LINE L1 5299 6092 -74 26 0 0 0 chr15 25261541 25261567 -60434187 + AT_rich Low_complexity Low_complexity 1 26 0 225 244 0 0 chr15 25261874 25261919 -60433835 - MIR SINE MIR -128 134 90 261 87 43 0 chr15 25261920 25261966 -60433788 + L1MC3 LINE L1 7738 7785 0 666 239 43 129 chr15 25262009 25262428 -60433326 + MLT1F-int LTR MaLR 982 1364 -7 1118 235 158 11 chr15 25262533 25262895 -60432859 + MLT1F LTR MaLR 128 542 0 207 186 0 0 chr15 25263648 25263691 -60432063 + (CAT)n Simple_repeat Simple_repeat 2 44 0 736 267 42 0 chr15 25263713 25263904 -60431850 - MIR SINE MIR -30 232 34 1531 202 13 23 chr15 25264781 25265088 -60430666 - MER58B DNA MER1_type -37 304 1 213 344 0 0 chr15 25265123 25265184 -60430570 + L2 LINE L2 3187 3247 -25 377 214 61 20 chr15 25266222 25266320 -60429434 + L2 LINE L2 3211 3312 -1 186 43 0 0 chr15 25267143 25267166 -60428588 + (A)n Simple_repeat Simple_repeat 1 23 0 1001 210 79 98 chr15 25267723 25268190 -60427564 + MLT1C LTR MaLR 2 459 -8 330 266 0 25 chr15 25271873 25271952 -60423802 - MER5A DNA MER1_type -40 149 73 599 261 152 13 chr15 25272057 25272287 -60423467 - MIR SINE MIR 0 262 1 205 268 42 0 chr15 25272407 25272478 -60423276 - MIR SINE MIR -128 134 61 3049 77 3 0 chr15 25274427 25274790 -60420964 + THE1B LTR MaLR 1 364 0 315 331 31 15 chr15 25275551 25275681 -60420073 + L2 LINE L2 3182 3313 0 266 300 0 22 chr15 25275931 25276021 -60419733 - L3 LINE CR1 -10 1567 1480 186 283 61 50 chr15 25276952 25277032 -60418722 + MIR SINE MIR 77 160 -102 2339 112 50 31 chr15 25277032 25277389 -60418365 - THE1B LTR MaLR 0 364 1 186 283 61 50 chr15 25277389 25277407 -60418347 + MIR SINE MIR 160 176 -86 2356 166 70 17 chr15 25277701 25278104 -60417650 - MSTB LTR MaLR -2 424 1 186 253 32 74 chr15 25279009 25279104 -60416650 + L3 LINE CR1 1412 1502 -75 279 299 248 0 chr15 25279631 25279788 -60415966 - MER91A DNA MER1_type 0 196 1 2119 138 0 0 chr15 25280030 25280327 -60415427 + AluSx SINE Alu 1 297 -15 186 167 0 0 chr15 25280737 25280773 -60414981 + T-rich Low_complexity Low_complexity 1 36 0 191 263 125 38 chr15 25281195 25281275 -60414479 - MIR SINE MIR -109 153 67 192 40 0 0 chr15 25282236 25282261 -60413493 + (GGAGA)n Simple_repeat Simple_repeat 1 25 0 2043 122 4 0 chr15 25282464 25282742 -60413012 + AluSp SINE Alu 3 281 -32 405 238 23 50 chr15 25283450 25283672 -60412082 + L1MD3 LINE L1 5290 7784 -196 23 54 0 0 chr15 25283672 25283709 -60412045 + AT_rich Low_complexity Low_complexity 1 37 0 533 327 118 2 chr15 25283893 25284322 -60411432 + L2 LINE L2 2580 3060 -212 343 302 9 28 chr15 25284352 25284458 -60411296 + L2 LINE L2 3165 3268 -4 293 286 44 0 chr15 25284462 25284553 -60411201 + L1ME LINE L1 5558 5652 -469 808 305 101 33 chr15 25285128 25285318 -60410436 - L1MC/D LINE L1 -775 5371 5195 2076 136 0 3 chr15 25285318 25285612 -60410142 + AluSx SINE Alu 1 293 -19 808 305 101 33 chr15 25285612 25286520 -60409234 - L1MC/D LINE L1 -951 5195 4542 233 343 146 24 chr15 25286747 25287123 -60408631 - L2 LINE L2 -815 2499 2078 2206 112 13 0 chr15 25287174 25287477 -60408277 + AluSp SINE Alu 7 313 0 605 333 0 0 chr15 25287574 25287748 -60408006 + MIR SINE MIR 34 207 -55 622 247 75 17 chr15 25288161 25288335 -60407419 - L1MC/D LINE L1 -2011 5797 5614 204 213 0 0 chr15 25291294 25291341 -60404413 + (CA)n Simple_repeat Simple_repeat 2 48 0 709 271 42 28 chr15 25291461 25291675 -60404079 + MIR SINE MIR 18 234 -28 814 293 19 0 chr15 25291972 25292187 -60403567 - LTR16C LTR ERVL -62 429 211 290 209 70 12 chr15 25292231 25292317 -60403437 - LTR16C LTR ERVL -364 127 37 1485 203 11 0 chr15 25292751 25293012 -60402742 + Tigger7 DNA MER2_type 1 264 -469 712 121 0 0 chr15 25293012 25293111 -60402643 + Tigger7 DNA MER2_type 2389 2487 0 2291 84 3 0 chr15 25293227 25293531 -60402223 + AluY SINE Alu 1 305 0 904 230 72 5 chr15 25294382 25294591 -60401163 - MER58A DNA MER1_type -1 223 1 643 288 106 0 chr15 25294930 25295166 -60400588 + MIR SINE MIR 2 262 0 328 282 86 17 chr15 25295978 25296095 -60399659 - MER5B DNA MER1_type 0 178 54 2228 113 3 0 chr15 25296116 25296408 -60399346 - AluSx SINE Alu -19 293 1 941 239 77 8 chr15 25296411 25296670 -60399084 - L1ME3A LINE L1 -2 6168 5892 566 163 69 15 chr15 25296662 25296796 -60398958 - L1MC3 LINE L1 -1 7765 6224 * 817 205 5 107 chr15 25296808 25297056 -60398698 - L1ME3A LINE L1 -274 5896 5673 236 234 21 0 chr15 25297058 25297105 -60398649 - MER5B DNA MER1_type -129 49 2 305 226 78 70 chr15 25297506 25297621 -60398133 - L1ME3A LINE L1 -781 5381 5266 1707 199 24 53 chr15 25297841 25298118 -60397636 - MLT1C LTR MaLR -8 459 196 1907 215 19 31 chr15 25298118 25298537 -60397217 + MLT2D LTR ERVL 1 414 0 1707 199 24 53 chr15 25298537 25298677 -60397077 - MLT1C LTR MaLR -271 196 54 252 330 31 21 chr15 25299042 25299139 -60396615 + MIR SINE MIR 22 119 -143 267 377 108 0 chr15 25299724 25299854 -60395900 + L2 LINE L2 3116 3259 -13 23 33 0 0 chr15 25302342 25302372 -60393382 + AT_rich Low_complexity Low_complexity 1 30 0 637 244 146 5 chr15 25302646 25302851 -60392903 + MIR SINE MIR 28 261 -1 1251 219 82 18 chr15 25303020 25303363 -60392391 - MLT1A1 LTR MaLR 0 365 1 652 275 141 23 chr15 25306145 25306622 -60389132 - L1ME4a LINE L1 -74 6047 5515 241 394 31 31 chr15 25306959 25307185 -60388569 + L2 LINE L2 2836 3061 -211 337 387 0 15 chr15 25308174 25308311 -60387443 + MIR SINE MIR 8 142 -120 * 776 262 145 21 chr15 25308309 25308599 -60387155 + L2 LINE L2 2988 3313 0 414 306 32 8 chr15 25310533 25310657 -60385097 - L2 LINE L2 -5 3267 3141 1202 313 153 45 chr15 25310703 25311986 -60383768 + L2 LINE L2 709 2130 -1184 355 291 95 29 chr15 25312014 25312224 -60383530 - L2 LINE L2 -634 2680 2457 350 309 21 0 chr15 25312439 25312536 -60383218 + L2 LINE L2 3173 3271 -1 509 267 23 0 chr15 25312582 25312713 -60383041 + MIR SINE MIR 92 225 -37 29 28 0 0 chr15 25312731 25312767 -60382987 + AT_rich Low_complexity Low_complexity 1 36 0 754 263 163 8 chr15 25313926 25314306 -60381448 - LTR16A LTR ERVL -3 447 9 22 35 0 0 chr15 25315595 25315624 -60380130 + AT_rich Low_complexity Low_complexity 1 29 0 2255 115 29 35 chr15 25316755 25317130 -60378624 + MER83C LTR ERV1 1 373 0 412 309 32 8 chr15 25317203 25317329 -60378425 - L2 LINE L2 0 3313 3185 280 289 125 79 chr15 25317335 25317485 -60378269 + MIR SINE MIR 8 164 -98 397 284 99 6 chr15 25317485 25317647 -60378107 - MER5B DNA MER1_type 0 178 2 413 276 16 24 chr15 25318053 25318176 -60377578 - MIR3 SINE MIR -23 185 64 271 235 0 0 chr15 25318240 25318291 -60377463 - Tigger5 DNA MER2_type 0 2323 2273 2111 116 3 7 chr15 25319316 25319601 -60376153 + AluSx SINE Alu 1 284 -28 225 65 0 0 chr15 25319604 25319635 -60376119 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 844 339 70 20 chr15 25319927 25320709 -60375045 + HAL1b LINE L1 15 835 -513 29 28 0 0 chr15 25320828 25320864 -60374890 + AT_rich Low_complexity Low_complexity 1 36 0 354 91 0 0 chr15 25321035 25321090 -60374664 + (TG)n Simple_repeat Simple_repeat 2 56 0 2238 209 75 87 chr15 25321107 25321624 -60374130 + L1MC5 LINE L1 6646 7150 -811 2937 85 78 9 chr15 25321624 25322007 -60373747 + MLT2A2 LTR ERVL 1 417 -36 338 100 17 0 chr15 25322007 25322067 -60373687 + (TA)n Simple_repeat Simple_repeat 2 62 0 2937 85 78 9 chr15 25322067 25322107 -60373647 + MLT2A2 LTR ERVL 417 453 0 2238 209 75 87 chr15 25322107 25322479 -60373275 + L1MC5 LINE L1 7150 7525 -436 346 238 30 152 chr15 25322567 25322669 -60373085 + L1ME3A LINE L1 5961 6021 -149 3139 25 0 0 chr15 25322669 25323034 -60372720 - L1PA5 LINE L1 -8 6146 5782 346 238 30 152 chr15 25323034 25323162 -60372592 + L1ME3A LINE L1 6021 6163 -7 187 216 0 0 chr15 25323334 25323371 -60372383 - L2 LINE L2 -14 3299 3263 902 141 0 22 chr15 25324021 25324205 -60371549 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 350 157 43 0 chr15 25324205 25324275 -60371479 + GA-rich Low_complexity Low_complexity 1 73 0 718 295 55 14 chr15 25324281 25324498 -60371256 - MIR SINE MIR -35 227 2 409 323 56 0 chr15 25324620 25324781 -60370973 + L2 LINE L2 2490 2659 -655 240 218 11 115 chr15 25327302 25327389 -60368365 + L2 LINE L2 3231 3308 -5 22 0 0 0 chr15 25327389 25327411 -60368343 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr15 25327484 25327529 -60368225 + AT_rich Low_complexity Low_complexity 1 45 0 505 209 96 140 chr15 25327635 25328041 -60367713 - L1ME4a LINE L1 -201 5920 5533 422 253 139 48 chr15 25328110 25328468 -60367286 - L1ME4a LINE L1 -743 5403 5039 25 0 0 0 chr15 25328476 25328501 -60367253 + AT_rich Low_complexity Low_complexity 1 25 0 258 299 23 0 chr15 25328579 25328666 -60367088 - L1ME4a LINE L1 -1301 4845 4757 24 77 0 0 chr15 25329478 25329530 -60366224 + AT_rich Low_complexity Low_complexity 1 52 0 373 314 50 0 chr15 25329530 25329651 -60366103 - MIR SINE MIR -58 204 78 902 291 8 0 chr15 25331260 25331501 -60364253 + MIR SINE MIR 18 260 -2 1856 124 40 20 chr15 25331769 25332067 -60363687 + AluSx SINE Alu 1 304 -8 49 34 0 34 chr15 25332163 25332252 -60363502 + AT_rich Low_complexity Low_complexity 1 86 0 26 50 0 0 chr15 25332610 25332650 -60363104 + AT_rich Low_complexity Low_complexity 1 40 0 283 296 11 11 chr15 25333122 25333210 -60362544 + MIR SINE MIR 16 103 -105 724 239 98 17 chr15 25333544 25333778 -60361976 + MARNA DNA Mariner 145 397 -189 25 31 0 0 chr15 25333951 25333983 -60361771 + AT_rich Low_complexity Low_complexity 1 32 0 338 257 178 6 chr15 25334054 25334200 -60361554 - MIR3 SINE MIR -36 172 3 238 298 84 53 chr15 25335121 25335252 -60360502 + MIR3 SINE MIR 9 143 -65 212 321 25 0 chr15 25335448 25335529 -60360225 + (TATG)n Simple_repeat Simple_repeat 3 85 0 2110 127 109 15 chr15 25335564 25335959 -60359795 + MSTB1 LTR MaLR 1 432 0 1037 320 90 6 chr15 25336236 25336756 -60358998 + L2 LINE L2 2751 3312 -1 404 259 124 51 chr15 25336774 25337122 -60358632 - MLT1F1 LTR MaLR -29 538 158 206 350 67 0 chr15 25337441 25337501 -60358253 + MIR SINE MIR 43 106 -102 201 244 0 44 chr15 25339878 25339923 -60355831 + MER91B DNA MER1_type 15 57 -133 22 0 0 0 chr15 25340493 25340515 -60355239 + AT_rich Low_complexity Low_complexity 1 22 0 203 274 244 36 chr15 25341243 25341411 -60354343 - L2 LINE L2 -1 3312 3110 208 139 0 0 chr15 25343741 25343777 -60351977 + (A)n Simple_repeat Simple_repeat 1 36 0 682 218 8 23 chr15 25344116 25344249 -60351505 + MER58B DNA MER1_type 211 341 0 2417 80 0 10 chr15 25345519 25345831 -60349923 + AluSg SINE Alu 1 309 -1 27 0 0 0 chr15 25346036 25346063 -60349691 + AT_rich Low_complexity Low_complexity 1 27 0 34 42 0 0 chr15 25347381 25347429 -60348325 + AT_rich Low_complexity Low_complexity 1 48 0 478 256 8 16 chr15 25348078 25348207 -60347547 + MER94 DNA DNA 5 132 -2 244 353 26 26 chr15 25351992 25352108 -60343646 + L2 LINE L2 3197 3312 -1 215 216 0 0 chr15 25353653 25353690 -60342064 + polypurine Low_complexity Low_complexity 5 41 0 36 40 0 0 chr15 25353715 25353765 -60341989 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr15 25354708 25354729 -60341025 + AT_rich Low_complexity Low_complexity 1 21 0 1565 188 116 19 chr15 25357119 25357592 -60338162 + Charlie1b DNA MER1_type 1 519 -4 26 0 0 0 chr15 25358594 25358620 -60337134 + AT_rich Low_complexity Low_complexity 1 26 0 248 254 105 39 chr15 25358756 25358937 -60336817 + L1ME4a LINE L1 1476 1668 -4728 378 283 108 26 chr15 25359420 25359798 -60335956 + L1ME4a LINE L1 2343 2751 -3464 418 247 113 34 chr15 25360027 25360266 -60335488 + L1ME4a LINE L1 5695 5952 -238 281 247 67 22 chr15 25360303 25360392 -60335362 + L1ME4a LINE L1 6025 6117 -73 221 231 0 0 chr15 25362087 25362126 -60333628 + (TG)n Simple_repeat Simple_repeat 2 40 0 315 49 0 0 chr15 25363141 25363182 -60332572 + (CA)n Simple_repeat Simple_repeat 2 42 0 181 182 36 0 chr15 25363768 25363823 -60331931 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 26 0 0 0 chr15 25363827 25363853 -60331901 + AT_rich Low_complexity Low_complexity 1 26 0 503 248 47 8 chr15 25365383 25365512 -60330242 - MIR SINE MIR -48 214 81 428 264 77 26 chr15 25365531 25365588 -60330166 - MIR SINE MIR -49 213 160 14044 117 38 54 chr15 25365588 25368044 -60327710 + Tigger1 DNA MER2_type 2 2417 -1 428 264 77 26 chr15 25368044 25368141 -60327613 - MIR SINE MIR -102 160 51 23 0 0 0 chr15 25370720 25370743 -60325011 + AT_rich Low_complexity Low_complexity 1 23 0 2275 88 3 3 chr15 25373127 25373422 -60322332 - AluSg1 SINE Alu -14 295 1 2176 102 0 0 chr15 25373637 25373953 -60321801 - AluSx SINE Alu 0 316 1 250 298 0 36 chr15 25374053 25374137 -60321617 + MER5B DNA MER1_type 95 175 -3 24 32 0 0 chr15 25374974 25375005 -60320749 + AT_rich Low_complexity Low_complexity 1 31 0 10207 167 49 26 chr15 25375595 25375645 -60320109 + L1MA9 LINE L1 2995 3042 -3270 1967 158 0 3 chr15 25375645 25375949 -60319805 + AluSx SINE Alu 1 303 -9 10207 167 49 26 chr15 25375949 25379142 -60316612 + L1MA9 LINE L1 3042 6307 -5 207 0 0 0 chr15 25379747 25379770 -60315984 + (A)n Simple_repeat Simple_repeat 1 23 0 301 300 162 67 chr15 25381331 25381764 -60313990 - L1M2 LINE L1 -5825 1024 551 339 65 0 0 chr15 25382933 25382979 -60312775 + (CA)n Simple_repeat Simple_repeat 1 46 0 389 268 96 18 chr15 25383067 25383231 -60312523 + MIR SINE MIR 17 191 -71 236 170 189 0 chr15 25383624 25383677 -60312077 - MER58A DNA MER1_type -38 69 7 429 206 165 0 chr15 25383677 25383774 -60311980 + MER96B DNA MER1_type? 305 417 0 2102 82 4 0 chr15 25384022 25384337 -60311417 - AluY SINE Alu 0 316 1 1028 245 139 44 chr15 25384633 25385065 -60310689 - MLT1J LTR MaLR 0 511 39 197 178 22 0 chr15 25385610 25385655 -60310099 + CT-rich Low_complexity Low_complexity 1 46 0 333 263 109 34 chr15 25386785 25386960 -60308794 - MER95 LTR ERV -4 427 240 4962 172 31 7 chr15 25387952 25388991 -60306763 + L1MC2 LINE L1 5186 6331 -13 2184 99 0 35 chr15 25390146 25390459 -60305295 + AluSg SINE Alu 1 302 -8 207 281 88 0 chr15 25392528 25392585 -60303169 + L2 LINE L2 3162 3223 -49 2222 120 0 0 chr15 25393360 25393668 -60302086 - AluSx SINE Alu -4 308 1 448 275 161 7 chr15 25393686 25393835 -60301919 + MER5A DNA MER1_type 18 189 0 246 105 0 0 chr15 25394401 25394439 -60301315 + (CTTTG)n Simple_repeat Simple_repeat 2 39 0 24 32 0 0 chr15 25398262 25398293 -60297461 + AT_rich Low_complexity Low_complexity 1 31 0 359 276 41 8 chr15 25398572 25398695 -60297059 - L3 LINE CR1 -260 1317 1191 334 380 75 21 chr15 25398889 25399168 -60296586 + L2 LINE L2 2323 2616 -698 236 340 142 7 chr15 25399522 25399663 -60296091 + MIR SINE MIR 97 256 -6 1402 335 120 20 chr15 25399843 25400709 -60295045 - L3 LINE CR1 -505 1072 120 854 295 29 70 chr15 25400990 25401404 -60294350 + L2 LINE L2 2917 3313 0 210 220 0 40 chr15 25402200 25402250 -60293504 - L2 LINE L2 -5 3308 3261 1342 307 32 2 chr15 25402754 25403158 -60292596 - LTR16A LTR ERVL 0 450 35 22 70 0 0 chr15 25404086 25404129 -60291625 + AT_rich Low_complexity Low_complexity 1 43 0 243 327 88 18 chr15 25406044 25406157 -60289597 + MIR3 SINE MIR 5 125 -83 237 268 37 85 chr15 25406271 25406353 -60289401 + MIR SINE MIR 29 106 -102 210 339 16 74 chr15 25406550 25406671 -60289083 + MIR3 SINE MIR 87 200 -8 460 300 25 80 chr15 25406798 25406998 -60288756 - MIR SINE MIR -66 196 8 864 232 18 36 chr15 25408737 25408957 -60286797 - MIR SINE MIR -43 219 4 2097 125 0 10 chr15 25409252 25409548 -60286206 + AluSx SINE Alu 2 294 -18 1872 155 40 10 chr15 25412123 25412419 -60283335 - AluJo SINE Alu -7 305 1 2295 85 0 17 chr15 25412880 25413174 -60282580 - AluSp SINE Alu -24 289 1 224 226 38 0 chr15 25413892 25413945 -60281809 + A-rich Low_complexity Low_complexity 4 58 0 1906 145 10 35 chr15 25414382 25414692 -60281062 + AluSq SINE Alu 3 304 -9 21 0 0 0 chr15 25414846 25414867 -60280887 + AT_rich Low_complexity Low_complexity 1 21 0 27 87 0 0 chr15 25415970 25416039 -60279715 + AT_rich Low_complexity Low_complexity 1 69 0 476 267 48 24 chr15 25416723 25416997 -60278757 - MIR SINE MIR 0 262 20 2294 82 24 0 chr15 25417309 25417478 -60278276 - AluY SINE Alu -10 301 121 182 0 107 0 chr15 25417478 25417506 -60278248 + T-rich Low_complexity Low_complexity 5 35 0 2294 82 24 0 chr15 25417506 25417630 -60278124 - AluY SINE Alu -190 121 1 180 0 0 0 chr15 25418080 25418100 -60277654 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 341 250 20 40 chr15 25418531 25418683 -60277071 + L1MC5 LINE L1 7758 7906 -55 22 0 0 0 chr15 25419013 25419035 -60276719 + AT_rich Low_complexity Low_complexity 1 22 0 1178 154 23 0 chr15 25420738 25420959 -60274795 + MER33 DNA MER1_type 1 226 -98 1952 171 0 9 chr15 25421601 25421916 -60273838 - AluJb SINE Alu 0 312 1 185 310 35 0 chr15 25421917 25421975 -60273779 - L2 LINE L2 -8 3264 3205 1924 137 6 44 chr15 25423069 25423390 -60272364 + AluSc SINE Alu 1 309 0 511 80 45 0 chr15 25423398 25423486 -60272268 + GA-rich Low_complexity Low_complexity 1 92 0 833 150 0 0 chr15 25423577 25423710 -60272044 + AluJo/FLAM SINE Alu 1 133 -169 268 81 0 0 chr15 25423710 25423747 -60272007 + AluSg/x SINE Alu 133 169 -133 1359 122 0 5 chr15 25423747 25423935 -60271819 + AluSg/x SINE Alu 116 302 -10 492 18 0 0 chr15 25423935 25423992 -60271762 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 41 0 0 0 chr15 25426256 25426297 -60269457 + AT_rich Low_complexity Low_complexity 1 41 0 189 74 0 0 chr15 25426394 25426421 -60269333 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 191 340 50 0 chr15 25426868 25426968 -60268786 + MIR SINE MIR 83 187 -75 384 304 107 36 chr15 25427023 25427191 -60268563 - MER5A DNA MER1_type -3 186 7 1419 222 75 53 chr15 25428077 25428622 -60267132 - MER34B LTR ERV1 0 565 9 192 288 15 30 chr15 25428871 25428937 -60266817 - MIR SINE MIR -3 259 195 720 176 17 0 chr15 25429252 25429371 -60266383 + FLAM_A SINE Alu 1 121 -12 180 269 0 96 chr15 25431936 25431988 -60263766 + L3 LINE CR1 1022 1068 -509 228 200 20 0 chr15 25432358 25432408 -60263346 + (TA)n Simple_repeat Simple_repeat 1 51 0 215 157 20 0 chr15 25432508 25432559 -60263195 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr15 25432636 25432658 -60263096 + AT_rich Low_complexity Low_complexity 1 22 0 445 363 15 25 chr15 25433244 25433445 -60262309 + MIR SINE MIR 8 206 -56 395 261 85 26 chr15 25435014 25435167 -60260587 - L2 LINE L2 0 3313 3152 672 251 68 0 chr15 25435275 25435438 -60260316 + MIR SINE MIR 2 175 -87 2231 107 17 0 chr15 25435543 25435843 -60259911 + AluSg SINE Alu 1 305 -5 328 315 86 31 chr15 25435860 25436022 -60259732 - L2 LINE L2 -219 3053 2883 343 326 101 17 chr15 25436957 25437135 -60258619 + MIR SINE MIR 20 212 -50 365 323 0 12 chr15 25437583 25437747 -60258007 + T-rich Low_complexity Low_complexity 2 163 0 216 263 42 0 chr15 25437954 25438049 -60257705 + (TG)n Simple_repeat Simple_repeat 1 99 0 2280 75 0 33 chr15 25438268 25438573 -60257181 + AluSx SINE Alu 1 295 -17 180 125 0 0 chr15 25439154 25439186 -60256568 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 780 178 0 22 chr15 25439332 25439467 -60256287 + FLAM_A SINE Alu 1 132 -1 25 0 0 0 chr15 25439507 25439532 -60256222 + AT_rich Low_complexity Low_complexity 1 25 0 752 245 10 20 chr15 25439699 25439899 -60255855 - MLT1J LTR MaLR -307 204 7 384 22 0 0 chr15 25439900 25439945 -60255809 + (CA)n Simple_repeat Simple_repeat 2 46 0 247 318 36 27 chr15 25440101 25440211 -60255543 - L2 LINE L2 -217 3055 2945 400 216 189 27 chr15 25440335 25440446 -60255308 + L2 LINE L2 3185 3313 0 193 306 0 0 chr15 25440526 25440575 -60255179 - MIR SINE MIR -139 123 75 448 339 132 32 chr15 25440770 25441080 -60254674 - L2 LINE L2 -21 3251 2911 29 28 0 0 chr15 25441125 25441161 -60254593 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr15 25441429 25441465 -60254289 + AT_rich Low_complexity Low_complexity 1 36 0 247 315 38 102 chr15 25441551 25441786 -60253968 - L2 LINE L2 -531 2783 2564 406 251 131 27 chr15 25441838 25442021 -60253733 + MER112 DNA MER1_type 12 213 -47 197 318 171 29 chr15 25442033 25442379 -60253375 - L2 LINE L2 -941 2373 1979 1691 175 3 14 chr15 25443037 25443357 -60252397 + AluJb SINE Alu 1 317 0 2168 114 0 0 chr15 25443468 25443758 -60251996 - AluSx SINE Alu -22 290 1 853 101 14 0 chr15 25443818 25443966 -60251788 + (TA)n Simple_repeat Simple_repeat 2 151 0 22 0 0 0 chr15 25444547 25444569 -60251185 + AT_rich Low_complexity Low_complexity 1 22 0 1734 187 3 0 chr15 25446328 25446622 -60249132 + AluJo SINE Alu 1 295 -17 306 315 87 7 chr15 25446993 25447142 -60248612 + L3 LINE CR1 1353 1513 -64 2214 104 3 0 chr15 25447183 25447490 -60248264 + AluSg1 SINE Alu 1 308 -1 353 250 257 7 chr15 25447804 25447952 -60247802 + L1ME LINE L1 5582 5766 -355 3437 125 13 47 chr15 25449053 25449670 -60246084 - L1PA16 LINE L1 -9 6157 5562 22 0 0 0 chr15 25450272 25450294 -60245460 + AT_rich Low_complexity Low_complexity 1 22 0 2152 112 10 0 chr15 25450306 25450609 -60245145 + AluSx SINE Alu 1 306 -6 359 272 72 33 chr15 25451612 25451792 -60243962 + MER5A DNA MER1_type 2 188 -1 22 0 0 0 chr15 25452128 25452150 -60243604 + AT_rich Low_complexity Low_complexity 1 22 0 1873 144 14 3 chr15 25452568 25452852 -60242902 + AluSq SINE Alu 1 287 -26 21 0 0 0 chr15 25452852 25452873 -60242881 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr15 25454484 25454515 -60241239 + (CA)n Simple_repeat Simple_repeat 1 31 0 2367 95 7 0 chr15 25455730 25456035 -60239719 + AluSq SINE Alu 1 307 -6 343 219 337 0 chr15 25456036 25456195 -60239559 - MIR SINE MIR 0 262 52 219 256 0 0 chr15 25456264 25456303 -60239451 - L2 LINE L2 -79 3193 3155 196 302 0 0 chr15 25456441 25456494 -60239260 + L2 LINE L2 3261 3313 0 21 0 0 0 chr15 25456504 25456525 -60239229 + AT_rich Low_complexity Low_complexity 1 21 0 3147 211 90 10 chr15 25457008 25458152 -60237602 - L1ME1 LINE L1 -15 6151 4923 342 0 0 0 chr15 25458400 25458438 -60237316 + (A)n Simple_repeat Simple_repeat 1 38 0 2422 53 0 10 chr15 25458447 25458746 -60237008 + AluY SINE Alu 1 296 -15 2270 116 0 0 chr15 25458965 25459267 -60236487 + AluSc SINE Alu 1 302 -7 2598 106 3 16 chr15 25460249 25460618 -60235136 - THE1B LTR MaLR 0 364 1 10635 84 38 46 chr15 25460618 25461887 -60233867 - THE1B-int LTR MaLR 0 1580 324 2869 0 0 0 chr15 25461887 25462194 -60233560 + AluYa5 SINE Alu 1 307 -4 10635 84 38 46 chr15 25462194 25462514 -60233240 - THE1B-int LTR MaLR -1256 324 3 948 137 7 15 chr15 25462514 25462769 -60232985 - THE1B LTR MaLR -5 359 1 261 299 91 47 chr15 25463305 25463603 -60232151 + L3b LINE CR1 1107 1417 -166 24 0 0 0 chr15 25463767 25463791 -60231963 + AT_rich Low_complexity Low_complexity 1 24 0 2015 118 11 0 chr15 25463797 25464067 -60231687 + AluSx SINE Alu 5 277 -35 252 0 0 0 chr15 25464067 25464095 -60231659 + (TAA)n Simple_repeat Simple_repeat 3 30 0 315 0 0 0 chr15 25464156 25464191 -60231563 + (CA)n Simple_repeat Simple_repeat 1 35 0 413 314 14 67 chr15 25464230 25464440 -60231314 - MIR SINE MIR -18 244 46 684 325 8 17 chr15 25465596 25465836 -60229918 + MIR SINE MIR 25 262 0 338 192 14 0 chr15 25467278 25467351 -60228403 - MER116 DNA Mariner 0 80 7 1820 162 14 0 chr15 25467491 25467796 -60227958 - AluJo SINE Alu 0 309 1 313 266 92 58 chr15 25469579 25469617 -60226137 - MIR3 SINE MIR -13 195 160 1390 172 32 3 chr15 25469617 25469925 -60225829 - MER33 DNA MER1_type -4 320 4 313 266 92 58 chr15 25469925 25470059 -60225695 - MIR3 SINE MIR -48 160 17 316 258 0 54 chr15 25470318 25470411 -60225343 + MER5A DNA MER1_type 9 96 -93 22 70 0 0 chr15 25472618 25472661 -60223093 + AT_rich Low_complexity Low_complexity 1 43 0 575 305 25 15 chr15 25474169 25474372 -60221382 - MIR SINE MIR -55 207 3 28 29 0 0 chr15 25474402 25474437 -60221317 + AT_rich Low_complexity Low_complexity 1 35 0 195 205 34 17 chr15 25474455 25474572 -60221182 + (TA)n Simple_repeat Simple_repeat 1 119 0 2230 93 42 0 chr15 25474729 25475018 -60220736 + AluSq SINE Alu 3 303 -10 2033 137 3 3 chr15 25476204 25476512 -60219242 - AluSx SINE Alu 0 308 1 1555 163 121 69 chr15 25476543 25476611 -60219143 - MLT1D LTR MaLR 0 505 442 2008 139 24 0 chr15 25476611 25476906 -60218848 + AluSx SINE Alu 1 302 -10 1555 163 121 69 chr15 25476906 25477317 -60218437 - MLT1D LTR MaLR -63 442 1 554 174 87 9 chr15 25478451 25478566 -60217188 - L2 LINE L2 -1 3312 3189 1253 351 106 34 chr15 25479112 25480107 -60215647 - L2 LINE L2 -12 3260 2072 2364 128 26 10 chr15 25480107 25480491 -60215263 + MLT1B LTR MaLR 1 390 0 1253 351 106 34 chr15 25480491 25481182 -60214572 - L2 LINE L2 -1200 2072 1433 767 40 0 0 chr15 25481945 25482044 -60213710 + AluY SINE Alu 198 296 -15 538 247 147 6 chr15 25482047 25482217 -60213537 - MIR SINE MIR -18 244 51 203 246 0 0 chr15 25484296 25484357 -60211397 + CT-rich Low_complexity Low_complexity 1 61 0 222 37 0 0 chr15 25484622 25484649 -60211105 + (CA)n Simple_repeat Simple_repeat 1 27 0 885 275 16 8 chr15 25484851 25485102 -60210652 + MIR SINE MIR 6 258 -4 447 227 126 33 chr15 25485338 25485520 -60210234 + MIR SINE MIR 15 212 -50 415 235 188 20 chr15 25486706 25486855 -60208899 + MIR SINE MIR 76 249 -13 365 296 23 0 chr15 25487059 25487147 -60208607 - MIR SINE MIR -116 146 57 1770 175 31 0 chr15 25488425 25488716 -60207038 - AluJb SINE Alu -12 300 1 370 279 47 28 chr15 25492707 25492878 -60202876 + MIR3 SINE MIR 3 177 -31 320 77 19 0 chr15 25493180 25493232 -60202522 + (TA)n Simple_repeat Simple_repeat 2 54 0 6698 107 55 32 chr15 25493306 25494483 -60201271 - Tigger3b DNA MER2_type -27 1204 1 829 210 45 104 chr15 25494654 25495011 -60200743 + L1MC4 LINE L1 7702 8037 -5 264 184 55 18 chr15 25495033 25495142 -60200612 + (TA)n Simple_repeat Simple_repeat 1 113 0 1598 196 32 40 chr15 25496302 25496679 -60199075 - MLT1A2 LTR MaLR 0 374 1 1642 195 25 0 chr15 25496705 25496987 -60198767 - AluJb SINE Alu -22 290 2 25 0 0 0 chr15 25497071 25497096 -60198658 + AT_rich Low_complexity Low_complexity 1 25 0 1871 144 27 7 chr15 25497547 25497845 -60197909 + AluJb SINE Alu 6 309 -3 2184 123 7 0 chr15 25497847 25498157 -60197597 + AluSx SINE Alu 1 312 0 1763 174 7 3 chr15 25498670 25498990 -60196764 - AluJo SINE Alu 0 312 1 492 256 7 29 chr15 25499785 25499922 -60195832 - MER91A DNA MER1_type -36 160 27 23 54 0 0 chr15 25500456 25500493 -60195261 + AT_rich Low_complexity Low_complexity 1 37 0 295 221 58 0 chr15 25500730 25500816 -60194938 - MLT1L LTR MaLR 0 615 525 1652 179 27 7 chr15 25503830 25504131 -60191623 + AluJo SINE Alu 1 307 -5 337 319 0 35 chr15 25505774 25505887 -60189867 + L3 LINE CR1 1455 1563 -14 2903 10 0 0 chr15 25506119 25506431 -60189323 + AluYb8 SINE Alu 1 312 -6 202 241 35 35 chr15 25507027 25507085 -60188669 + L2 LINE L2 3205 3262 -10 190 273 61 0 chr15 25508200 25508266 -60187488 - L2 LINE L2 -566 2748 2679 1053 250 143 41 chr15 25508278 25508670 -60187084 - LTR16A LTR ERVL 0 450 19 26 0 0 0 chr15 25509246 25509272 -60186482 + AT_rich Low_complexity Low_complexity 1 26 0 1588 204 3 14 chr15 25509272 25509561 -60186193 - AluJo SINE Alu -26 286 1 302 281 18 46 chr15 25509566 25509675 -60186079 + MER5A DNA MER1_type 49 143 -35 288 364 29 29 chr15 25509697 25509837 -60185917 + L2 LINE L2 2181 2320 -994 1933 135 44 0 chr15 25509906 25510202 -60185552 - AluSx SINE Alu -3 309 1 526 75 0 86 chr15 25510246 25510339 -60185415 + Alu SINE Alu 226 310 0 339 274 89 55 chr15 25511022 25511259 -60184495 + L1 LINE L1 2266 2510 -3636 2151 134 3 6 chr15 25511277 25511591 -60184163 - AluSq SINE Alu 0 313 1 236 282 80 41 chr15 25511709 25512074 -60183680 + L1 LINE L1 2675 3053 -3093 398 320 64 51 chr15 25512147 25512381 -60183373 + MIR SINE MIR 8 244 -18 339 302 68 68 chr15 25512639 25513050 -60182704 + L1 LINE L1 3411 3821 -2325 207 0 0 0 chr15 25513713 25513736 -60182018 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 1493 173 14 38 chr15 25513739 25514028 -60181726 - AluJo SINE Alu -30 282 1 645 183 0 0 chr15 25514203 25514307 -60181447 - MLT1E1 LTR MaLR 0 654 551 257 0 30 0 chr15 25514311 25514344 -60181410 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 841 102 0 0 chr15 25514344 25514452 -60181302 - FLAM_C SINE Alu -22 121 14 1102 191 87 72 chr15 25514462 25514736 -60181018 - MLT1E1 LTR MaLR -97 557 214 2214 120 0 3 chr15 25514736 25515044 -60180710 + AluSx SINE Alu 1 307 -5 1102 191 87 72 chr15 25515044 25515208 -60180546 - MLT1E1 LTR MaLR -440 214 54 1931 138 0 63 chr15 25516407 25516740 -60179014 + AluJb SINE Alu 1 312 0 1496 254 114 85 chr15 25516864 25517823 -60177931 + L2 LINE L2 2327 3313 0 2160 127 17 0 chr15 25518022 25518322 -60177432 - AluSx SINE Alu -7 305 1 2061 102 14 3 chr15 25518328 25518621 -60177133 - AluSg SINE Alu -14 296 1 237 243 36 136 chr15 25518958 25519098 -60176656 - LTR28 LTR ERV1 -47 973 848 493 185 27 68 chr15 25519130 25519276 -60176478 - LTR1B LTR ERV1 -344 482 343 453 261 104 17 chr15 25519314 25519527 -60176227 - LTR1 LTR ERV1 -564 221 28 1663 207 117 46 chr15 25519616 25520019 -60175735 + MER92C LTR ERV1 1 439 -115 2155 130 0 7 chr15 25520019 25520327 -60175427 + AluSx SINE Alu 1 306 -6 1663 207 117 46 chr15 25520327 25520357 -60175397 + MER92C LTR ERV1 439 465 -89 2054 195 41 57 chr15 25520357 25520522 -60175232 + MLT1D LTR MaLR 1 167 -338 901 121 38 8 chr15 25520522 25520679 -60175075 - L1PA10 LINE L1 0 6168 6032 2054 195 41 57 chr15 25520679 25521026 -60174728 + MLT1D LTR MaLR 167 505 0 438 161 37 12 chr15 25521031 25521112 -60174642 + MER92C LTR ERV1 470 552 -2 422 304 176 2 chr15 25521112 25521343 -60174411 - L2 LINE L2 -312 3001 2732 2223 114 0 3 chr15 25521384 25521691 -60174063 + AluSc SINE Alu 1 306 -3 540 266 11 43 chr15 25521808 25521996 -60173758 - LTR33 LTR ERVL -11 510 329 540 318 6 6 chr15 25522068 25522244 -60173510 - LTR33 LTR ERVL -333 188 13 2105 204 22 32 chr15 25523832 25524336 -60171418 + MLT1D LTR MaLR 1 499 -6 1742 63 0 30 chr15 25524939 25525176 -60170578 - AluY SINE Alu -3 308 79 3676 112 10 51 chr15 25525310 25525457 -60170297 - Tigger4(Zombi) DNA MER2_type 0 2731 2580 2937 9 0 0 chr15 25525457 25525773 -60169981 - AluYb8 SINE Alu -2 316 1 3676 112 10 51 chr15 25525773 25526213 -60169541 - Tigger4(Zombi) DNA MER2_type -151 2580 2168 867 169 56 0 chr15 25526215 25526375 -60169379 - Tigger4(Zombi) DNA MER2_type -2559 172 4 395 252 82 7 chr15 25527034 25527169 -60168585 - MER103 DNA DNA -1 165 21 1693 181 0 23 chr15 25527360 25527659 -60168095 - AluJb SINE Alu -20 292 1 832 216 44 5 chr15 25528099 25528417 -60167337 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr15 25529318 25529339 -60166415 + AT_rich Low_complexity Low_complexity 1 21 0 709 80 44 53 chr15 25529339 25529452 -60166302 - HY1 scRNA scRNA 0 112 1 2156 131 0 13 chr15 25529822 25530134 -60165620 - AluSx SINE Alu -4 308 1 1359 241 153 38 chr15 25530626 25531156 -60164598 + Charlie2 DNA MER1_type 1 591 -2191 25 0 0 0 chr15 25531491 25531516 -60164238 + AT_rich Low_complexity Low_complexity 1 25 0 303 241 105 43 chr15 25531641 25531803 -60163951 - L2 LINE L2 -100 3213 3042 205 192 370 41 chr15 25531804 25531950 -60163804 - L2 LINE L2 -1148 2166 1973 1258 172 180 16 chr15 25532040 25532284 -60163470 + AluJb SINE Alu 1 284 -18 745 265 35 48 chr15 25532342 25532520 -60163234 + MIR SINE MIR 9 188 -74 1914 137 0 20 chr15 25532520 25532819 -60162935 - AluJo SINE Alu -19 293 1 2445 76 3 0 chr15 25532821 25533125 -60162629 - AluSp SINE Alu -8 305 1 745 265 35 48 chr15 25533125 25533173 -60162581 + MIR SINE MIR 189 235 -27 2137 61 71 0 chr15 25533362 25533642 -60162112 + AluSp SINE Alu 1 300 -13 250 326 0 0 chr15 25534185 25534283 -60161471 + HAL1 LINE L1 1634 1731 -776 207 298 0 0 chr15 25534334 25534391 -60161363 - L2 LINE L2 -1062 2252 2196 21 0 0 0 chr15 25535667 25535688 -60160066 + GC_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr15 25536138 25536173 -60159581 + GC_rich Low_complexity Low_complexity 1 35 0 198 324 0 27 chr15 25536697 25536771 -60158983 - MIR SINE MIR -43 219 148 181 271 0 42 chr15 25536949 25536997 -60158757 + MER5B DNA MER1_type 111 156 -22 437 226 0 0 chr15 25537672 25537765 -60157989 + MIR SINE MIR 170 262 0 223 304 95 19 chr15 25539368 25539526 -60156228 + L2 LINE L2 1656 1825 -1489 529 265 158 10 chr15 25541133 25541329 -60154425 + MIR SINE MIR 11 235 -27 540 285 61 57 chr15 25542213 25542526 -60153228 + L1ME LINE L1 5285 5600 -521 1338 196 83 4 chr15 25542635 25542911 -60152843 + AluJo SINE Alu 1 298 -14 283 357 89 13 chr15 25543161 25543385 -60152369 - L3b LINE CR1 -84 1499 1259 702 156 89 45 chr15 25544027 25544244 -60151510 + L1MB8 LINE L1 5959 6178 0 289 208 0 0 chr15 25547038 25547086 -60148668 - MER112 DNA MER1_type -35 225 178 214 208 75 45 chr15 25547358 25547432 -60148322 - MIR SINE MIR -63 145 75 919 209 166 25 chr15 25547432 25547752 -60148002 - MLT1A1 LTR MaLR 0 365 1 214 208 75 45 chr15 25547752 25547816 -60147938 - MIR SINE MIR -133 75 2 2186 104 3 3 chr15 25548089 25548377 -60147377 + AluSx SINE Alu 1 288 -24 483 238 125 102 chr15 25548638 25548991 -60146763 - L1ME3A LINE L1 -34 6119 5759 454 272 46 51 chr15 25549004 25549199 -60146555 - L1ME3A LINE L1 -2346 3783 3590 314 157 0 29 chr15 25549213 25549283 -60146471 + C-rich Low_complexity Low_complexity 5 72 0 289 209 74 47 chr15 25549371 25549540 -60146214 - L1MEd LINE L1 -4865 1254 1174 2646 153 19 53 chr15 25549622 25550150 -60145604 - L1MC1 LINE L1 -18 6315 5806 2378 191 62 11 chr15 25550174 25550725 -60145029 - L1MC1 LINE L1 -844 5302 4724 2354 73 33 3 chr15 25550744 25551045 -60144709 - AluSq SINE Alu -3 310 1 609 158 58 0 chr15 25551103 25551223 -60144531 - MLT1C LTR MaLR -340 127 1 801 219 123 0 chr15 25551236 25551487 -60144267 - L1MC1 LINE L1 -2447 3699 3418 2445 108 128 10 chr15 25551488 25551525 -60144229 - MLT2A1 LTR ERVL -8 436 405 189 0 0 0 chr15 25551525 25551546 -60144208 + (TA)n Simple_repeat Simple_repeat 2 22 0 2445 108 128 10 chr15 25551546 25551898 -60143856 - MLT2A1 LTR ERVL -39 405 1 1153 236 31 31 chr15 25551898 25551993 -60143761 - L1MC1 LINE L1 -2721 3425 3331 2078 119 3 38 chr15 25551993 25552313 -60143441 - AluSc SINE Alu 0 309 1 1153 236 31 31 chr15 25552313 25552640 -60143114 - L1MC1 LINE L1 -2814 3332 3003 1896 98 0 42 chr15 25553676 25553961 -60141793 + L1PB1 LINE L1 5879 6151 0 2024 157 14 40 chr15 25553999 25554350 -60141404 - MER2 DNA MER2_type -2 342 1 1911 107 70 0 chr15 25554545 25554846 -60140908 - AluSx SINE Alu 0 312 1 2365 62 10 3 chr15 25555259 25555550 -60140204 + AluY SINE Alu 1 293 -18 2292 90 3 26 chr15 25555714 25556026 -60139728 - AluSg SINE Alu -5 305 1 22 0 0 0 chr15 25556076 25556098 -60139656 + AT_rich Low_complexity Low_complexity 1 22 0 209 396 57 0 chr15 25556228 25556387 -60139367 + MIR3 SINE MIR 34 201 -7 451 319 71 0 chr15 25556598 25556780 -60138974 + MIR SINE MIR 67 261 -1 1548 142 26 122 chr15 25557169 25557514 -60138240 + AluJo SINE Alu 1 312 0 2247 86 0 0 chr15 25557535 25557838 -60137916 + AluSc SINE Alu 1 303 0 196 350 19 29 chr15 25557888 25557991 -60137763 - MIR SINE MIR -68 140 39 2321 98 3 0 chr15 25559670 25559967 -60135787 - AluSx SINE Alu -14 298 1 710 219 5 62 chr15 25560436 25560628 -60135126 - L1MC5 LINE L1 -39 7922 7742 372 22 0 0 chr15 25560911 25560956 -60134798 + (TG)n Simple_repeat Simple_repeat 1 45 0 2347 98 0 7 chr15 25561447 25561753 -60134001 + AluSq SINE Alu 1 304 -9 1216 156 39 34 chr15 25563875 25564080 -60131674 + AluJb SINE Alu 86 291 -21 978 151 0 13 chr15 25564769 25564928 -60130826 + AluSc SINE Alu 148 304 -5 2268 88 7 3 chr15 25565025 25565319 -60130435 - AluY SINE Alu -16 295 1 856 242 167 71 chr15 25565403 25566080 -60129674 - HAL1 LINE L1 -74 2433 1692 2327 107 0 0 chr15 25566100 25566410 -60129344 - AluSq SINE Alu -3 310 1 1349 229 122 54 chr15 25566416 25566957 -60128797 - L1ME2 LINE L1 0 6164 5587 1196 54 0 13 chr15 25567035 25567184 -60128570 - L1PA5 LINE L1 0 6154 6008 1245 54 0 0 chr15 25567184 25567333 -60128421 + L1P2 LINE L1 5634 5782 -373 267 313 0 0 chr15 25567410 25567474 -60128280 - MLT1J2 LTR MaLR -120 330 267 321 261 97 17 chr15 25567529 25567679 -60128075 - MLT1J2 LTR MaLR -264 145 1 816 263 89 58 chr15 25567679 25569096 -60126658 - HAL1 LINE L1 -854 1653 4 201 39 0 0 chr15 25569459 25569485 -60126269 + (TAA)n Simple_repeat Simple_repeat 2 27 0 125 14 0 0 chr15 25569485 25569624 -60126130 + AT_rich Low_complexity Low_complexity 1 139 0 303 293 38 9 chr15 25569723 25569829 -60125925 + L2 LINE L2 3164 3272 0 211 372 16 33 chr15 25569894 25570015 -60125739 + MIR SINE MIR 30 148 -114 884 231 0 6 chr15 25570046 25570206 -60125548 - FRAM SINE Alu -21 155 1 187 333 119 23 chr15 25570790 25570967 -60124787 + MIR SINE MIR 18 211 -51 2339 103 0 0 chr15 25571560 25571861 -60123893 - AluSg1 SINE Alu -8 301 1 2239 121 0 13 chr15 25572318 25572632 -60123122 + AluSq SINE Alu 1 310 -3 2324 96 26 3 chr15 25573744 25574047 -60121707 + AluSg SINE Alu 1 310 0 912 256 12 0 chr15 25574884 25575056 -60120698 - FAM SINE Alu -1 174 1 326 301 135 0 chr15 25576101 25576257 -60119497 + MIR SINE MIR 24 200 -62 225 0 0 0 chr15 25576453 25576478 -60119276 + (T)n Simple_repeat Simple_repeat 1 25 0 289 171 14 43 chr15 25577123 25577193 -60118561 - MER117 DNA MER1_type -84 113 46 2384 129 22 25 chr15 25579525 25579890 -60115864 + THE1B LTR MaLR 1 364 0 12699 89 1 18 chr15 25579890 25581497 -60114257 + THE1B-int LTR MaLR 1 1580 0 2270 111 60 29 chr15 25581500 25581850 -60113904 + THE1B LTR MaLR 4 364 0 216 214 0 43 chr15 25582008 25582078 -60113676 + CT-rich Low_complexity Low_complexity 2 68 0 300 311 163 25 chr15 25582414 25582610 -60113144 + HAL1 LINE L1 1561 1783 -724 2777 185 11 17 chr15 25582761 25583236 -60112518 + MER70A LTR ERVL 1 472 0 226 345 0 0 chr15 25583414 25583501 -60112253 + HAL1 LINE L1 2078 2164 -343 2387 113 25 17 chr15 25583971 25584333 -60111421 - THE1C LTR MaLR 0 375 11 180 0 0 0 chr15 25585580 25585600 -60110154 + (CTA)n Simple_repeat Simple_repeat 1 20 0 1347 259 116 25 chr15 25585664 25586223 -60109531 - MLT1L LTR MaLR -5 610 1 266 271 60 99 chr15 25586881 25587183 -60108571 - MLT1I LTR MaLR -22 387 98 653 230 87 6 chr15 25587209 25587370 -60108384 - MER21B LTR ERV1 -54 809 636 1690 232 18 15 chr15 25587450 25587790 -60107964 - MER21B LTR ERV1 -514 349 9 253 261 14 14 chr15 25587794 25587863 -60107891 - MLT1I LTR MaLR -300 109 41 234 333 86 19 chr15 25587980 25588142 -60107612 + L3 LINE CR1 994 1166 -411 2279 87 3 3 chr15 25589774 25590073 -60105681 + AluSg SINE Alu 1 299 -11 576 260 28 39 chr15 25590082 25590263 -60105491 + MIR SINE MIR 10 188 -74 244 289 221 7 chr15 25590314 25590463 -60105291 - MLT1K LTR MaLR -6 582 402 1685 201 66 81 chr15 25590465 25590947 -60104807 + MLT1F LTR MaLR 1 475 -67 1442 162 8 12 chr15 25590947 25591194 -60104560 + MER47A DNA MER2_type 1 246 -120 613 267 34 0 chr15 25591194 25591340 -60104414 - MIR SINE MIR -105 157 7 2110 131 0 0 chr15 25591412 25591703 -60104051 - AluSx SINE Alu -3 309 19 203 256 0 0 chr15 25593426 25593469 -60102285 + CT-rich Low_complexity Low_complexity 3 45 0 213 39 0 0 chr15 25594273 25594299 -60101455 + (T)n Simple_repeat Simple_repeat 1 26 0 491 235 83 30 chr15 25594735 25594867 -60100887 - L2 LINE L2 0 3272 3134 263 174 36 167 chr15 25595442 25595580 -60100174 - L1ME3A LINE L1 -88 6082 5963 307 243 0 14 chr15 25595587 25595657 -60100097 - L1MCa LINE L1 -4352 2074 2006 303 292 11 11 chr15 25595626 25595715 -60100039 - L1MC4 LINE L1 -1339 6983 6895 * 915 230 102 43 chr15 25595747 25596069 -60099685 - L1ME3A LINE L1 -215 5955 5615 532 308 90 30 chr15 25596071 25596333 -60099421 + LTR33 LTR ERVL 2 254 -269 581 263 161 27 chr15 25596816 25597040 -60098714 + MIR SINE MIR 9 262 0 216 0 0 0 chr15 25597105 25597129 -60098625 + (TA)n Simple_repeat Simple_repeat 2 25 0 377 282 19 0 chr15 25598553 25598656 -60097098 + MIR SINE MIR 49 153 -109 213 191 29 59 chr15 25599359 25599427 -60096327 + MIR SINE MIR 197 262 0 222 288 15 0 chr15 25600310 25600376 -60095378 - MIR SINE MIR -111 151 85 5410 15 2 0 chr15 25600788 25601414 -60094340 + L1PA3 LINE L1 5534 6160 0 184 262 226 12 chr15 25601497 25601581 -60094173 - MIR SINE MIR -70 138 37 1859 167 0 10 chr15 25602242 25602553 -60093201 - AluJo SINE Alu -4 308 1 243 236 89 96 chr15 25603089 25603246 -60092508 + MLT1J2 LTR MaLR 1 156 -294 248 231 45 104 chr15 25603346 25603480 -60092274 + MLT1J2 LTR MaLR 281 406 -44 451 345 29 0 chr15 25603505 25603676 -60092078 + MIR SINE MIR 46 221 -41 215 261 15 46 chr15 25603801 25603866 -60091888 + L2 LINE L2 3200 3262 -10 2266 67 3 7 chr15 25604678 25604963 -60090791 + AluY SINE Alu 11 294 -17 1807 152 38 7 chr15 25604990 25605279 -60090475 + AluJo SINE Alu 1 298 -14 322 214 245 0 chr15 25605649 25605747 -60090007 - MER96B DNA MER1_type? 0 417 296 232 121 0 0 chr15 25605773 25605806 -60089948 + MER58A DNA MER1_type 45 77 -30 385 235 189 15 chr15 25605806 25605938 -60089816 + MER5A DNA MER1_type 35 189 0 760 236 11 17 chr15 25607058 25607236 -60088518 - MER5B DNA MER1_type -1 177 1 26 0 0 0 chr15 25607266 25607292 -60088462 + AT_rich Low_complexity Low_complexity 1 26 0 225 254 17 0 chr15 25607311 25607370 -60088384 - MLT1J2 LTR MaLR -21 429 370 485 308 36 10 chr15 25607373 25607568 -60088186 - MLT1J2 LTR MaLR -250 200 1 2183 112 3 0 chr15 25607657 25607953 -60087801 + AluSp SINE Alu 1 297 -16 187 175 35 0 chr15 25607997 25608054 -60087700 + (TA)n Simple_repeat Simple_repeat 2 60 0 2524 65 0 0 chr15 25608091 25608398 -60087356 + AluY SINE Alu 1 307 -4 1461 159 59 4 chr15 25608420 25608659 -60087095 - AluJo SINE Alu -47 265 14 374 297 62 8 chr15 25609291 25609419 -60086335 - L2 LINE L2 0 3272 3138 187 300 22 44 chr15 25609640 25609730 -60086024 + MIR SINE MIR 24 111 -97 293 297 133 8 chr15 25609877 25610005 -60085749 - MIR SINE MIR -95 167 24 2120 148 0 0 chr15 25611207 25611510 -60084244 - AluSx SINE Alu -9 303 1 213 338 42 0 chr15 25612871 25612942 -60082812 - L3 LINE CR1 -18 1559 1486 397 319 96 46 chr15 25613032 25613292 -60082462 - L3 LINE CR1 -85 1492 1220 1050 145 22 6 chr15 25615501 25615680 -60080074 + MER5A DNA MER1_type 8 189 0 2434 74 0 0 chr15 25618497 25618793 -60076961 + AluY SINE Alu 1 296 -15 480 269 76 46 chr15 25620811 25621008 -60074746 - MIR SINE MIR -58 204 2 834 152 11 11 chr15 25621230 25621408 -60074346 + CT-rich Low_complexity Low_complexity 1 178 0 24 0 0 0 chr15 25621507 25621531 -60074223 + AT_rich Low_complexity Low_complexity 1 24 0 304 197 83 38 chr15 25621708 25621840 -60073914 + LTR33 LTR ERVL 1 138 -383 231 121 0 0 chr15 25621836 25621869 -60073885 + LTR33 LTR ERVL 487 519 -2 * 739 256 52 52 chr15 25621919 25622208 -60073546 + L3 LINE CR1 1287 1575 -2 407 371 36 6 chr15 25623794 25623961 -60071793 + MIR3 SINE MIR 35 206 -2 234 0 0 0 chr15 25624075 25624101 -60071653 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1654 133 115 11 chr15 25626559 25626838 -60068916 + AluSg1 SINE Alu 1 308 -1 210 91 0 0 chr15 25628249 25628282 -60067472 + (TCTCC)n Simple_repeat Simple_repeat 4 36 0 24 77 0 0 chr15 25631115 25631167 -60064587 + AT_rich Low_complexity Low_complexity 1 52 0 455 200 0 9 chr15 25632421 25632536 -60063218 + CT-rich Low_complexity Low_complexity 2 115 0 299 219 210 67 chr15 25633454 25633573 -60062181 - MER5B DNA MER1_type -42 136 1 1085 191 31 36 chr15 25633810 25634035 -60061719 - MER58A DNA MER1_type 0 224 1 377 302 38 9 chr15 25634048 25634154 -60061600 + MER5B DNA MER1_type 6 114 -64 2191 113 7 10 chr15 25634974 25635284 -60060470 - AluSx SINE Alu -3 309 1 278 236 16 50 chr15 25635367 25635549 -60060205 + (TATAA)n Simple_repeat Simple_repeat 1 176 0 2137 118 3 3 chr15 25635551 25635840 -60059914 - AluSx SINE Alu -23 289 1 184 292 0 0 chr15 25636234 25636282 -60059472 + L2 LINE L2 3210 3257 -15 337 236 0 0 chr15 25637064 25637136 -60058618 - MER94 DNA DNA -1 133 62 850 147 102 34 chr15 25637765 25637942 -60057812 - MER5A DNA MER1_type 0 189 1 200 247 0 12 chr15 25638106 25638187 -60057567 + GA-rich Low_complexity Low_complexity 4 83 0 1949 166 3 0 chr15 25638680 25638982 -60056772 - AluSx SINE Alu -9 303 1 801 166 0 0 chr15 25639552 25639697 -60056057 + (TG)n Simple_repeat Simple_repeat 2 146 0 497 264 23 0 chr15 25640589 25640718 -60055036 + L2 LINE L2 3180 3311 -2 244 286 149 3 chr15 25644596 25644701 -60051053 - MIR SINE MIR -68 140 60 535 271 0 0 chr15 25646502 25646631 -60049123 - MER94 DNA DNA -2 132 4 196 326 141 22 chr15 25647503 25647595 -60048159 + L3b LINE CR1 1457 1559 -24 1541 172 8 8 chr15 25647674 25647941 -60047813 + AluJo SINE Alu 37 303 -9 356 256 47 0 chr15 25648995 25649081 -60046673 - L1MC4 LINE L1 -1339 6703 6614 356 233 47 0 chr15 25649009 25649095 -60046659 + L1MC4 LINE L1 6614 6703 -1339 38 39 0 0 chr15 25649665 25649717 -60046037 + AT_rich Low_complexity Low_complexity 1 52 0 2011 131 14 46 chr15 25650073 25650423 -60045331 + MER44D DNA MER2_type 1 609 0 1133 118 22 1 chr15 25656672 25656860 -60038894 + L1MC1 LINE L1 5668 5825 -341 2127 127 8 8 chr15 25656862 25657173 -60038581 + AluSq SINE Alu 1 310 -3 310 202 0 0 chr15 25657173 25657240 -60038514 + A-rich Low_complexity Low_complexity 1 67 -113 2844 125 16 25 chr15 25657240 25657727 -60038027 + L1MC1 LINE L1 5851 6333 0 310 202 0 0 chr15 25657727 25657743 -60038011 + A-rich Low_complexity Low_complexity 66 180 0 514 273 160 0 chr15 25657992 25658142 -60037612 - MER5A DNA MER1_type -7 182 9 199 0 31 31 chr15 25658330 25658362 -60037392 + (CAA)n Simple_repeat Simple_repeat 2 33 0 327 104 0 0 chr15 25660723 25660771 -60034983 + (TG)n Simple_repeat Simple_repeat 2 49 0 213 424 8 0 chr15 25661202 25661327 -60034427 + L2 LINE L2 3142 3267 -5 192 179 0 0 chr15 25661538 25661577 -60034177 + (TAG)n Simple_repeat Simple_repeat 2 40 0 494 301 15 40 chr15 25661587 25661789 -60033965 - MIR SINE MIR -23 239 44 21 0 0 0 chr15 25662562 25662583 -60033171 + AT_rich Low_complexity Low_complexity 1 21 0 709 207 28 0 chr15 25662852 25662997 -60032757 + MIR3 SINE MIR 37 185 -23 240 167 0 0 chr15 25664741 25664789 -60030965 + CT-rich Low_complexity Low_complexity 1 48 0 240 196 36 36 chr15 25664820 25664876 -60030878 + L3 LINE CR1 1520 1575 -2 275 198 148 12 chr15 25665254 25665335 -60030419 + Charlie7 DNA MER1_type 5 96 -2516 212 118 0 39 chr15 25665430 25665481 -60030273 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 1248 225 79 0 chr15 25665565 25665881 -60029873 - MER58B DNA MER1_type 0 341 1 255 195 134 12 chr15 25667237 25667319 -60028435 + Charlie7 DNA MER1_type 5 96 -2516 212 118 0 39 chr15 25667414 25667465 -60028289 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 1222 228 79 0 chr15 25667549 25667865 -60027889 - MER58B DNA MER1_type 0 341 1 2053 140 0 19 chr15 25670102 25670416 -60025338 + AluSx SINE Alu 1 308 -4 189 328 16 0 chr15 25672193 25672254 -60023500 - MIR SINE MIR -154 108 47 213 381 143 7 chr15 25672309 25672456 -60023298 + L2 LINE L2 3106 3272 0 2542 54 0 0 chr15 25673937 25674231 -60021523 + AluY SINE Alu 1 294 -17 318 54 81 0 chr15 25674231 25674305 -60021449 + (TA)n Simple_repeat Simple_repeat 1 80 0 222 91 0 0 chr15 25677602 25677635 -60018119 + (ATG)n Simple_repeat Simple_repeat 1 33 0 24 0 0 0 chr15 25677763 25677787 -60017967 + AT_rich Low_complexity Low_complexity 1 24 0 264 100 0 0 chr15 25677981 25678021 -60017733 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 24 32 0 0 chr15 25679052 25679083 -60016671 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr15 25679659 25679680 -60016074 + AT_rich Low_complexity Low_complexity 1 21 0 934 121 8 0 chr15 25679680 25679812 -60015942 - AluSp SINE Alu -180 133 1 192 77 0 0 chr15 25681904 25681930 -60013824 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 4006 240 26 14 chr15 25685211 25686327 -60009427 + L1MEc LINE L1 29 1157 -5239 22 35 0 0 chr15 25687009 25687038 -60008716 + AT_rich Low_complexity Low_complexity 1 29 0 24 91 0 0 chr15 25687074 25687140 -60008614 + AT_rich Low_complexity Low_complexity 1 66 0 2328 95 7 0 chr15 25687264 25687559 -60008195 - AluSx SINE Alu -15 297 1 895 238 11 11 chr15 25687772 25687961 -60007793 - MER5A DNA MER1_type 0 189 1 337 286 224 16 chr15 25688025 25688217 -60007537 - MIR SINE MIR -23 239 8 1121 195 167 29 chr15 25688414 25688762 -60006992 + MSTD LTR MaLR 1 396 0 311 296 128 24 chr15 25688857 25688982 -60006772 - L2 LINE L2 -4 3309 3172 253 80 20 20 chr15 25689874 25689893 -60005861 + (TTAAA)n Simple_repeat Simple_repeat 5 23 -31 180 0 0 0 chr15 25689893 25689913 -60005841 + (CATAC)n Simple_repeat Simple_repeat 5 24 0 253 80 20 20 chr15 25689913 25689943 -60005811 + (TTAAA)n Simple_repeat Simple_repeat 22 54 0 851 247 37 29 chr15 25690415 25690658 -60005096 + LTR16A1 LTR ERVL 213 457 0 2188 119 0 10 chr15 25690954 25691264 -60004490 - AluSx SINE Alu -5 307 1 308 222 22 44 chr15 25691347 25691527 -60004227 + (TATAA)n Simple_repeat Simple_repeat 1 176 0 1768 149 7 50 chr15 25691529 25691831 -60003923 - AluSx SINE Alu -23 289 1 287 292 143 39 chr15 25693205 25693359 -60002395 + MIR3 SINE MIR 15 184 -24 209 200 0 0 chr15 25693816 25693851 -60001903 + T-rich Low_complexity Low_complexity 2 36 0 2250 93 0 7 chr15 25694076 25694377 -60001377 - AluY SINE Alu -12 299 1 30 0 0 0 chr15 25699262 25699292 -59996462 + AT_rich Low_complexity Low_complexity 1 30 0 567 257 49 56 chr15 25703879 25704183 -59991571 + MSTD LTR MaLR 8 309 -87 1194 226 16 28 chr15 25704518 25704841 -59990913 + MSTD LTR MaLR 78 396 0 185 333 83 12 chr15 25704969 25705053 -59990701 + MIR SINE MIR 39 128 -134 1958 145 27 3 chr15 25705320 25705489 -59990265 - AluSx SINE Alu -9 303 123 204 40 0 0 chr15 25705489 25705514 -59990240 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1958 145 27 3 chr15 25705514 25705640 -59990114 - AluSx SINE Alu -189 123 1 213 263 118 0 chr15 25705966 25706042 -59989712 - MIR3 SINE MIR -5 203 119 21 36 0 0 chr15 25706062 25706090 -59989664 + AT_rich Low_complexity Low_complexity 1 28 0 2483 72 3 0 chr15 25706314 25706621 -59989133 + AluSg SINE Alu 3 310 0 217 300 220 0 chr15 25708099 25708199 -59987555 + L2 LINE L2 3149 3270 -2 2081 148 0 13 chr15 25709854 25710164 -59985590 + AluSx SINE Alu 1 306 -6 279 158 73 0 chr15 25713724 25713889 -59981865 + (TA)n Simple_repeat Simple_repeat 2 178 0 261 56 0 0 chr15 25716582 25716618 -59979136 - L1P4 LINE L1 -381 5782 5747 437 226 188 8 chr15 25716880 25717013 -59978741 - MER5A DNA MER1_type 0 189 33 184 340 64 51 chr15 25718107 25718263 -59977491 - MIR3 SINE MIR -39 169 12 1933 186 54 50 chr15 25718717 25719213 -59976541 + MLT1D LTR MaLR 6 503 -2 21 0 0 0 chr15 25719995 25720016 -59975738 + AT_rich Low_complexity Low_complexity 1 21 0 1172 284 99 65 chr15 25720468 25721224 -59974530 - L2 LINE L2 -508 2806 2025 243 314 41 50 chr15 25722059 25722180 -59973574 + L2 LINE L2 3143 3262 -10 384 113 0 0 chr15 25723032 25723094 -59972660 - L1MA8 LINE L1 -6 6285 6224 311 177 0 0 chr15 25723751 25723813 -59971941 - L1MA8 LINE L1 -4 6287 6226 2626 97 10 162 chr15 25725977 25726604 -59969150 + MER1A DNA MER1_type 1 533 0 24 32 0 0 chr15 25726789 25726820 -59968934 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr15 25727613 25727645 -59968109 + AT_rich Low_complexity Low_complexity 1 32 0 2135 110 0 13 chr15 25729211 25729510 -59966244 - AluSx SINE Alu -17 295 1 368 317 113 0 chr15 25729760 25729902 -59965852 - L2 LINE L2 -556 2758 2601 1022 283 46 13 chr15 25730925 25731317 -59964437 + LTR16A LTR ERVL 1 405 -45 209 339 15 0 chr15 25732495 25732560 -59963194 - MIR SINE MIR -22 240 175 380 241 42 78 chr15 25734489 25734655 -59961099 - MIR3 SINE MIR -16 192 33 231 235 0 0 chr15 25736531 25736582 -59959172 + (TA)n Simple_repeat Simple_repeat 2 52 0 384 152 0 0 chr15 25736582 25736648 -59959106 + (TG)n Simple_repeat Simple_repeat 1 66 0 235 316 146 29 chr15 25736705 25736876 -59958878 + MIR3 SINE MIR 10 200 -8 908 280 75 33 chr15 25739073 25739498 -59956256 + L2 LINE L2 2816 3258 -55 198 0 0 0 chr15 25740238 25740260 -59955494 + (CAA)n Simple_repeat Simple_repeat 1 22 0 253 290 48 76 chr15 25742059 25742204 -59953550 + MIR SINE MIR 81 221 -41 286 319 50 0 chr15 25742242 25742361 -59953393 - L2 LINE L2 0 3313 3189 247 329 19 19 chr15 25743058 25743216 -59952538 - MARNA DNA Mariner -236 350 193 423 191 57 50 chr15 25744440 25744581 -59951173 + AluYa5 SINE Alu 2 143 -168 328 351 7 14 chr15 25745462 25745610 -59950144 + MIR SINE MIR 46 192 -70 221 261 15 46 chr15 25745761 25745826 -59949928 + L2 LINE L2 3200 3262 -10 2126 87 14 10 chr15 25746640 25746928 -59948826 + AluY SINE Alu 11 299 -12 243 290 0 0 chr15 25747037 25747099 -59948655 + (TA)n Simple_repeat Simple_repeat 2 63 0 26 30 0 0 chr15 25747161 25747194 -59948560 + AT_rich Low_complexity Low_complexity 1 33 0 231 36 0 0 chr15 25747201 25747229 -59948525 + (TG)n Simple_repeat Simple_repeat 2 29 0 511 83 0 14 chr15 25747956 25748028 -59947726 + Alu SINE Alu 223 293 -17 209 132 26 0 chr15 25749155 25749193 -59946561 + (TAA)n Simple_repeat Simple_repeat 3 41 0 1151 180 62 5 chr15 25749556 25749767 -59945987 - MER58A DNA MER1_type -1 223 1 21 36 0 0 chr15 25749836 25749864 -59945890 + AT_rich Low_complexity Low_complexity 1 28 0 1553 161 3 63 chr15 25750340 25750657 -59945097 + AluJo SINE Alu 1 298 -14 21 0 0 0 chr15 25750657 25750678 -59945076 + AT_rich Low_complexity Low_complexity 1 21 0 342 196 188 38 chr15 25751484 25751617 -59944137 - FRAM SINE Alu -10 156 4 1591 189 32 26 chr15 25752058 25752397 -59943357 + MER58B DNA MER1_type 1 341 0 692 230 22 28 chr15 25752401 25752579 -59943175 + MER5B DNA MER1_type 2 178 0 1217 195 0 31 chr15 25752758 25753015 -59942739 - AluSx SINE Alu 0 312 64 959 246 65 31 chr15 25755736 25756122 -59939632 - LTR16A LTR ERVL -22 428 30 2205 201 46 28 chr15 25756523 25756964 -59938790 - L1MC/D LINE L1 -480 5762 5330 2347 99 3 0 chr15 25756964 25757266 -59938488 - AluSx SINE Alu -9 303 1 2205 201 46 28 chr15 25757266 25757424 -59938330 - L1MC/D LINE L1 -912 5330 5176 2027 120 17 3 chr15 25757424 25757715 -59938039 - AluSx SINE Alu -17 295 1 2205 201 46 28 chr15 25757715 25757939 -59937815 - L1MC/D LINE L1 -1066 5176 4914 1559 196 38 44 chr15 25757939 25758492 -59937262 - MLT2A2 LTR ERVL 0 554 1 2683 222 36 53 chr15 25758492 25759420 -59936334 - L1MC/D LINE L1 -1228 4918 4007 365 229 0 0 chr15 25759420 25759490 -59936264 - AluJ/FRAM SINE Alu -10 292 223 10873 206 9 15 chr15 25759592 25762824 -59932930 - L1 LINE L1 -1509 4637 1436 22 80 0 0 chr15 25762988 25763038 -59932716 + AT_rich Low_complexity Low_complexity 1 50 0 255 235 0 0 chr15 25763047 25763098 -59932656 - tRNA-Asp-GAC tRNA tRNA -24 51 1 1071 199 21 42 chr15 25763146 25763483 -59932271 - L1MC5 LINE L1 -29 7932 7603 315 0 0 0 chr15 25763799 25763834 -59931920 + (CA)n Simple_repeat Simple_repeat 2 36 0 316 222 0 0 chr15 25766275 25766338 -59929416 + L2 LINE L2 3207 3269 -3 338 350 42 21 chr15 25767060 25767203 -59928551 + MIR SINE MIR 9 154 -108 2707 42 0 0 chr15 25767987 25768297 -59927457 + AluY SINE Alu 1 310 -1 694 205 0 0 chr15 25768665 25768821 -59926933 + L1 LINE L1 3252 3407 -2739 4315 118 12 22 chr15 25768824 25769512 -59926242 + L1MB3 LINE L1 5452 6134 -49 1861 127 51 14 chr15 25769512 25769804 -59925950 + AluSx SINE Alu 1 303 -9 4315 118 12 22 chr15 25769804 25769846 -59925908 + L1MB3 LINE L1 6134 6175 -8 239 281 0 0 chr15 25769876 25769933 -59925821 + MIR SINE MIR 203 259 -3 463 328 11 17 chr15 25770285 25770462 -59925292 + MIR3 SINE MIR 3 178 -30 2480 74 0 0 chr15 25770465 25770775 -59924979 + AluY SINE Alu 2 311 0 758 325 8 12 chr15 25770897 25771140 -59924614 - MIR SINE MIR 0 262 21 268 289 39 72 chr15 25771255 25771435 -59924319 - MIR3 SINE MIR 0 208 35 193 266 31 0 chr15 25771730 25771794 -59923960 + MIR SINE MIR 196 261 -1 2374 43 0 4 chr15 25772751 25773059 -59922695 - AluY SINE Alu 0 307 1 569 269 153 34 chr15 25773798 25774333 -59921421 + L1ME4a LINE L1 5521 6119 -2 797 163 0 8 chr15 25776211 25776340 -59919414 + FLAM_A SINE Alu 1 128 -5 323 214 73 20 chr15 25776655 25776752 -59919002 - MIR SINE MIR -100 108 8 21 0 0 0 chr15 25776978 25776999 -59918755 + AT_rich Low_complexity Low_complexity 1 21 0 189 100 0 0 chr15 25777496 25777512 -59918242 + (CTTA)n Simple_repeat Simple_repeat 2 20 -11 2189 78 0 52 chr15 25777512 25777821 -59917933 - AluY SINE Alu -18 293 1 189 100 0 0 chr15 25777821 25777834 -59917920 + (CTTA)n Simple_repeat Simple_repeat 19 31 0 2063 133 3 0 chr15 25778053 25778354 -59917400 - AluSx SINE Alu -6 306 5 909 205 118 31 chr15 25778933 25779225 -59916529 - MLT1C LTR MaLR -2 465 134 411 211 105 0 chr15 25779332 25779446 -59916308 - MLT1C LTR MaLR -334 133 8 245 231 19 0 chr15 25779917 25779969 -59915785 + L2 LINE L2 3255 3307 -6 416 303 74 6 chr15 25780287 25780449 -59915305 - MIR SINE MIR -70 192 20 650 264 67 67 chr15 25781106 25781279 -59914475 - L2 LINE L2 -2 3311 3136 517 104 26 0 chr15 25781279 25781356 -59914398 - MADE1 DNA Mariner 0 80 2 650 264 67 67 chr15 25781356 25781496 -59914258 - L2 LINE L2 -176 3137 2998 261 75 0 0 chr15 25781538 25781578 -59914176 + (CA)n Simple_repeat Simple_repeat 2 41 0 381 250 78 23 chr15 25783640 25783768 -59911986 - MIR SINE MIR -28 234 100 256 150 0 0 chr15 25783886 25783926 -59911828 - tRNA-Thr-ACT tRNA tRNA -37 40 1 1584 180 7 24 chr15 25785009 25785304 -59910450 + AluJo SINE Alu 1 290 -22 747 159 0 0 chr15 25785391 25785523 -59910231 + CT-rich Low_complexity Low_complexity 1 132 0 2390 98 3 0 chr15 25785523 25785830 -59909924 - AluSx SINE Alu -4 308 1 276 30 0 0 chr15 25786719 25786752 -59909002 + (CA)n Simple_repeat Simple_repeat 1 33 0 261 0 0 0 chr15 25786967 25786996 -59908758 + (CA)n Simple_repeat Simple_repeat 2 30 0 1876 167 17 3 chr15 25788644 25789003 -59906751 - MER47A DNA MER2_type 0 366 3 1851 171 3 0 chr15 25789107 25789400 -59906354 + AluJb SINE Alu 1 294 -18 903 240 36 21 chr15 25790196 25790475 -59905279 + L1ME LINE L1 40 322 -6074 2846 156 12 33 chr15 25790598 25791346 -59904408 + L1MB1 LINE L1 5111 5844 -324 871 115 0 7 chr15 25791356 25791495 -59904259 + L1MB1 LINE L1 5998 6135 -33 270 176 0 0 chr15 25791524 25791575 -59904179 + (CATA)n Simple_repeat Simple_repeat 2 52 0 559 256 32 88 chr15 25791630 25791880 -59903874 - MER102b DNA MER1_type -2 339 104 728 225 27 5 chr15 25792228 25792415 -59903339 - L1MC4 LINE L1 -151 7891 7701 1632 153 23 0 chr15 25793143 25793405 -59902349 + AluSg SINE Alu 29 296 -14 198 128 0 0 chr15 25794472 25794511 -59901243 + (A)n Simple_repeat Simple_repeat 1 39 0 358 298 23 8 chr15 25794830 25794961 -59900793 + MIR3 SINE MIR 73 205 -3 854 245 49 21 chr15 25795976 25796430 -59899324 - LTR33 LTR ERVL -22 499 1 2072 233 37 19 chr15 25796939 25797614 -59898140 + L1ME LINE L1 3360 4046 -2169 307 281 10 0 chr15 25797746 25797842 -59897912 + L1ME LINE L1 5579 5675 -515 2007 207 120 10 chr15 25797924 25798517 -59897237 + L1MC4a LINE L1 7150 7807 -1 25 0 0 0 chr15 25798694 25798719 -59897035 + AT_rich Low_complexity Low_complexity 1 25 0 1251 41 7 0 chr15 25801697 25801843 -59893911 + AluY SINE Alu 1 147 -164 231 227 45 45 chr15 25802369 25802435 -59893319 + MIR3 SINE MIR 92 157 -51 21 0 0 0 chr15 25803077 25803098 -59892656 + AT_rich Low_complexity Low_complexity 1 21 0 258 298 9 53 chr15 25803624 25803738 -59892016 - L2 LINE L2 -27 3245 3137 444 258 129 49 chr15 25804740 25804965 -59890789 + MIR SINE MIR 20 262 0 230 307 123 0 chr15 25805085 25805199 -59890555 - MIR3 SINE MIR -41 167 40 2189 108 3 0 chr15 25805502 25805799 -59889955 - AluSp SINE Alu -15 298 1 331 297 108 42 chr15 25807285 25807571 -59888183 + L1M4 LINE L1 5270 5574 -600 238 245 302 0 chr15 25807950 25808056 -59887698 + L2 LINE L2 3172 3309 -4 222 306 0 0 chr15 25808083 25808145 -59887609 - L2 LINE L2 0 3313 3252 569 271 92 24 chr15 25808364 25808571 -59887183 + MIR SINE MIR 1 221 -41 345 62 0 0 chr15 25811375 25811423 -59884331 + (CA)n Simple_repeat Simple_repeat 1 48 0 1828 195 100 11 chr15 25811510 25811971 -59883783 - L1MC3 LINE L1 0 7785 7284 252 179 57 66 chr15 25812004 25812110 -59883644 - L1ME4a LINE L1 -32 6089 5985 313 260 71 52 chr15 25812295 25812449 -59883305 - L1ME4a LINE L1 -394 5727 5571 257 266 62 23 chr15 25812637 25812765 -59882989 - L1ME3A LINE L1 0 6170 6038 1247 163 23 42 chr15 25812961 25813267 -59882487 - L1MB8 LINE L1 0 6178 5879 1296 255 73 40 chr15 25813329 25814439 -59881315 - L1ME LINE L1 -4636 1444 323 * 1476 234 127 12 chr15 25814437 25815120 -59880634 - L1MEc LINE L1 -4949 1447 686 231 254 18 0 chr15 25815667 25815722 -59880032 + MLT1K LTR MaLR 145 200 -388 252 290 0 29 chr15 25815800 25815869 -59879885 + MLT1K LTR MaLR 322 388 -200 502 260 53 12 chr15 25816253 25816422 -59879332 + L1ME3A LINE L1 5572 5747 -423 685 213 165 12 chr15 25816472 25816726 -59879028 + L1ME3A LINE L1 5870 6162 -8 2396 71 10 0 chr15 25816776 25817073 -59878681 + AluY SINE Alu 1 300 -11 361 241 214 21 chr15 25817184 25817371 -59878383 + L1M4 LINE L1 4485 4707 -1439 9028 101 52 1 chr15 25817659 25818992 -59876762 + Charlie3 DNA MER1_type 1 1401 -1309 1038 275 69 3 chr15 25819552 25819872 -59875882 + MLT1J LTR MaLR 1 341 -170 337 104 0 0 chr15 25820363 25820411 -59875343 - tRNA-Thr-ACT tRNA tRNA -29 48 1 557 300 142 3 chr15 25821181 25821504 -59874250 + LTR16A LTR ERVL 78 445 -5 1799 172 13 7 chr15 25822363 25822671 -59873083 + AluJb SINE Alu 1 310 -2 1326 205 74 77 chr15 25822671 25823101 -59872653 + MLT1C LTR MaLR 39 467 0 24 0 0 0 chr15 25823761 25823785 -59871969 + AT_rich Low_complexity Low_complexity 1 24 0 252 280 154 59 chr15 25823935 25824311 -59871443 + L2 LINE L2 2636 3083 -189 2367 119 31 0 chr15 25824334 25824687 -59871067 + THE1B LTR MaLR 1 364 0 797 259 62 16 chr15 25825056 25825522 -59870232 + Charlie7 DNA MER1_type 180 722 -1890 2080 204 37 34 chr15 25825852 25826308 -59869446 - L1M4 LINE L1 -3444 2938 2485 2235 118 3 0 chr15 25826308 25826612 -59869142 + AluSx SINE Alu 2 306 -6 2080 204 37 34 chr15 25826612 25827058 -59868696 - L1M4 LINE L1 -3897 2485 2017 592 188 10 0 chr15 25827072 25827173 -59868581 + Tigger3(Golem) DNA MER2_type 2 103 -2926 6621 141 22 15 chr15 25827179 25828378 -59867376 + Tigger3(Golem) DNA MER2_type 1821 3028 -1 2784 228 49 34 chr15 25828394 25828658 -59867096 - L1M4 LINE L1 -4488 1896 1637 2198 123 0 3 chr15 25828658 25828967 -59866787 + AluSq SINE Alu 1 308 -5 2784 228 49 34 chr15 25828967 25829900 -59865854 - L1M4 LINE L1 -4747 1637 800 2955 131 10 37 chr15 25830417 25831436 -59864318 + L1PB1 LINE L1 4821 5791 -364 252 184 0 0 chr15 25831437 25831486 -59864268 + (CA)n Simple_repeat Simple_repeat 2 50 0 2325 136 3 0 chr15 25831518 25831885 -59863869 + L1PB1 LINE L1 5782 6149 -2 1284 127 11 0 chr15 25831898 25832087 -59863667 + AluSg/x SINE Alu 121 311 -1 274 225 22 34 chr15 25832472 25832561 -59863193 - LTR67 LTR ERVL -14 543 456 251 321 18 9 chr15 25832778 25832887 -59862867 + GA-rich Low_complexity Low_complexity 2 111 0 491 31 15 0 chr15 25834328 25834393 -59861361 + (TG)n Simple_repeat Simple_repeat 2 67 0 1638 164 0 29 chr15 25834431 25834705 -59861049 - AluJo SINE Alu -46 266 1 301 286 36 45 chr15 25834936 25835048 -59860706 - MIR SINE MIR -79 183 73 2484 74 3 0 chr15 25836083 25836393 -59859361 + AluSp SINE Alu 1 311 -2 502 327 98 45 chr15 25837594 25837930 -59857824 + L2 LINE L2 2914 3267 -5 2084 126 0 0 chr15 25838284 25838569 -59857185 + AluSx SINE Alu 1 285 -27 206 0 69 0 chr15 25838572 25838601 -59857153 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 30 0 0 0 chr15 25838714 25838744 -59857010 + AT_rich Low_complexity Low_complexity 1 30 0 268 352 163 35 chr15 25840110 25840479 -59855275 - L2 LINE L2 -551 2763 2348 365 259 47 53 chr15 25840699 25840869 -59854885 + L1MC4 LINE L1 7873 8041 -1 2202 113 0 28 chr15 25840984 25841334 -59854420 + AluSx SINE Alu 1 312 0 4064 213 35 19 chr15 25841336 25842466 -59853288 + L1P LINE L1 4118 5266 -880 2098 112 24 10 chr15 25843551 25843847 -59851907 + AluSx SINE Alu 1 300 -12 26 30 0 0 chr15 25845228 25845261 -59850493 + AT_rich Low_complexity Low_complexity 1 33 0 438 246 109 109 chr15 25845755 25846093 -59849661 - MER102b DNA MER1_type -3 338 1 280 259 0 0 chr15 25846348 25846406 -59849348 - MIR SINE MIR -8 254 197 672 291 76 61 chr15 25846413 25847012 -59848742 + L2 LINE L2 2633 3261 -52 470 222 64 35 chr15 25848500 25848671 -59847083 - MER104 DNA MER2_type -4 176 1 976 178 0 25 chr15 25849215 25849412 -59846342 - AluJb SINE Alu -120 192 1 259 203 0 25 chr15 25849473 25849552 -59846202 + (TAAA)n Simple_repeat Simple_repeat 2 78 0 2368 72 0 44 chr15 25850265 25850586 -59845168 - AluSx SINE Alu -5 307 1 2296 170 59 43 chr15 25851416 25851909 -59843845 + MLT1D LTR MaLR 5 505 0 558 294 108 30 chr15 25852150 25852419 -59843335 - L2 LINE L2 -38 3275 2986 265 183 95 160 chr15 25852480 25852513 -59843241 + MARNA DNA Mariner 210 244 -342 2247 95 3 3 chr15 25852513 25852809 -59842945 - AluSq SINE Alu -17 296 1 265 183 95 160 chr15 25852809 25852944 -59842810 + MARNA DNA Mariner 244 367 -219 1629 119 123 8 chr15 25853479 25853758 -59841996 - AluSg1 SINE Alu 0 308 1 39 0 0 0 chr15 25853762 25853801 -59841953 + AT_rich Low_complexity Low_complexity 1 39 0 2166 87 11 0 chr15 25853945 25854231 -59841523 - AluY SINE Alu -22 289 1 2158 110 3 20 chr15 25854762 25855063 -59840691 - AluSx SINE Alu -16 296 1 217 293 129 9 chr15 25855107 25855223 -59840531 + MIR3 SINE MIR 40 169 -39 658 191 92 72 chr15 25855468 25855719 -59840035 - MER112 DNA MER1_type 0 256 1 735 170 63 6 chr15 25855986 25856145 -59839609 + L1PA16 LINE L1 5996 6163 -3 1761 115 37 8 chr15 25857148 25857392 -59838362 - AluSq SINE Alu -62 251 1 885 152 0 55 chr15 25857556 25857721 -59838033 - FAM SINE Alu -5 44 1 222 304 0 14 chr15 25857986 25858055 -59837699 - L2 LINE L2 0 3313 3246 333 0 0 0 chr15 25858280 25858317 -59837437 + (CA)n Simple_repeat Simple_repeat 1 37 0 240 305 105 77 chr15 25858610 25858895 -59836859 - L3b LINE CR1 -154 1429 1137 27 0 0 0 chr15 25859765 25859792 -59835962 + AT_rich Low_complexity Low_complexity 1 27 0 235 254 0 0 chr15 25859962 25860017 -59835737 + (TA)n Simple_repeat Simple_repeat 2 56 0 204 196 36 0 chr15 25862360 25862416 -59833338 + T-rich Low_complexity Low_complexity 3 60 0 1328 143 0 17 chr15 25862418 25862648 -59833106 - L1PA15 LINE L1 0 6165 5940 3797 110 9 5 chr15 25862648 25863200 -59832554 - L1PA16 LINE L1 -10 6156 5602 278 206 59 0 chr15 25864728 25864796 -59830958 - MER113 DNA MER1_type? -428 93 22 477 290 35 35 chr15 25865459 25865718 -59830036 - L1ME4a LINE L1 -168 5953 5695 23 0 0 0 chr15 25865814 25865837 -59829917 + AT_rich Low_complexity Low_complexity 1 23 0 412 219 6 134 chr15 25867710 25867874 -59827880 - MER5B DNA MER1_type 0 178 36 279 0 0 0 chr15 25867902 25867933 -59827821 + (TG)n Simple_repeat Simple_repeat 2 32 0 467 273 52 16 chr15 25868580 25868774 -59826980 + L1MC5 LINE L1 7271 7471 -490 299 252 161 7 chr15 25868884 25869024 -59826730 + L1MC4 LINE L1 7624 7896 -146 213 214 43 0 chr15 25869024 25869094 -59826660 + (TA)n Simple_repeat Simple_repeat 2 74 0 249 292 77 0 chr15 25869094 25869224 -59826530 + L1MC4 LINE L1 7902 8041 -1 1317 124 103 4 chr15 25870598 25870840 -59824914 + L1MB3 LINE L1 5918 6183 0 1490 164 65 11 chr15 25870850 25871139 -59824615 + AluJo SINE Alu 6 308 0 767 326 136 23 chr15 25871236 25872059 -59823695 - L2 LINE L2 -1 3312 2377 486 0 0 0 chr15 25872825 25872879 -59822875 + (CA)n Simple_repeat Simple_repeat 1 54 0 269 282 55 27 chr15 25875154 25875264 -59820490 + MIR3 SINE MIR 4 116 -92 262 283 75 19 chr15 25875961 25876067 -59819687 + L2 LINE L2 3178 3289 -24 279 0 0 0 chr15 25876073 25876104 -59819650 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 185 262 115 0 chr15 25876288 25876349 -59819405 + MIR SINE MIR 159 226 -36 4926 94 28 0 chr15 25876623 25877339 -59818415 - L1PA13 LINE L1 0 6163 5428 2042 135 3 0 chr15 25877377 25877673 -59818081 - AluJo SINE Alu -6 306 10 386 264 45 39 chr15 25877674 25877829 -59817925 + MLT1J LTR MaLR 356 511 0 653 277 40 17 chr15 25879050 25879227 -59816527 - MIR SINE MIR -70 192 12 347 342 18 0 chr15 25879257 25879371 -59816383 - MIR SINE MIR -70 138 23 343 210 37 12 chr15 25879898 25879979 -59815775 + MIR SINE MIR 73 155 -107 188 368 36 104 chr15 25880530 25880837 -59814917 + L2 LINE L2 2978 3263 -9 294 356 139 25 chr15 25881768 25881970 -59813784 + MIR SINE MIR 8 232 -30 455 319 98 12 chr15 25882325 25882488 -59813266 - MIR3 SINE MIR -30 178 2 509 213 110 7 chr15 25885410 25885546 -59810208 + MIR SINE MIR 63 212 -50 409 283 0 18 chr15 25885982 25886095 -59809659 + MIR SINE MIR 81 191 -71 263 263 0 0 chr15 25886148 25886205 -59809549 - MIR SINE MIR -69 139 83 21 0 0 0 chr15 25886476 25886497 -59809257 + AT_rich Low_complexity Low_complexity 1 21 0 391 327 83 6 chr15 25887030 25887198 -59808556 - MER5A DNA MER1_type -8 181 1 288 312 52 39 chr15 25887198 25887345 -59808409 + MIR3 SINE MIR 32 180 -28 223 222 0 123 chr15 25888098 25888179 -59807575 + L2 LINE L2 3242 3312 -1 372 260 64 20 chr15 25888258 25888375 -59807379 - L2 LINE L2 -16 3297 3134 25 51 0 0 chr15 25888648 25888687 -59807067 + AT_rich Low_complexity Low_complexity 1 39 0 33 0 0 0 chr15 25889668 25889701 -59806053 + AT_rich Low_complexity Low_complexity 1 33 0 217 336 29 0 chr15 25890065 25890169 -59805585 - MIR SINE MIR -26 236 130 216 318 15 0 chr15 25890282 25890348 -59805406 + L2 LINE L2 3246 3312 -1 465 209 29 29 chr15 25890417 25890556 -59805198 - L1ME4a LINE L1 -4 6117 5979 454 242 0 0 chr15 25891784 25891879 -59803875 - MIR3 SINE MIR -6 202 108 483 247 139 36 chr15 25892035 25892201 -59803553 + MER5A DNA MER1_type 4 186 -3 647 220 187 26 chr15 25892228 25892501 -59803253 + MER5C DNA MER1_type 8 324 0 6811 209 57 9 chr15 25892559 25893109 -59802645 + L1MB7 LINE L1 3620 4142 -2042 959 0 9 0 chr15 25893109 25893220 -59802534 + (GAAA)n Simple_repeat Simple_repeat 3 114 0 6811 209 57 9 chr15 25893220 25895123 -59800631 + L1MB7 LINE L1 4142 6184 0 296 309 95 18 chr15 25895648 25895816 -59799938 - L3 LINE CR1 -10 1567 1387 21 36 0 0 chr15 25898611 25898639 -59797115 + AT_rich Low_complexity Low_complexity 1 28 0 311 327 105 26 chr15 25899220 25899373 -59796381 - L2 LINE L2 -1 3271 3107 348 64 0 0 chr15 25900441 25900488 -59795266 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1341 181 12 0 chr15 25900488 25900731 -59795023 - L1PB4 LINE L1 -19 6137 5892 1662 117 140 0 chr15 25900732 25900924 -59794830 + L1PB4 LINE L1 5560 5724 -432 396 0 0 0 chr15 25900924 25900968 -59794786 + (CA)n Simple_repeat Simple_repeat 2 45 0 1662 117 140 0 chr15 25900968 25901075 -59794679 + L1PB4 LINE L1 5724 5901 -255 251 196 0 18 chr15 25901674 25901730 -59794024 + GA-rich Low_complexity Low_complexity 2 56 0 198 118 0 0 chr15 25901761 25901795 -59793959 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 392 271 44 83 chr15 25901797 25902026 -59793728 - L2 LINE L2 -16 3297 3078 851 72 0 0 chr15 25903802 25903917 -59791837 - L1M4 LINE L1 -496 5659 5563 3540 24 0 0 chr15 25903917 25904331 -59791423 + L1PA2 LINE L1 5742 6155 0 417 248 124 0 chr15 25906428 25906549 -59789205 - L2 LINE L2 0 3313 3178 287 253 168 0 chr15 25907529 25907624 -59788130 - L2 LINE L2 0 3272 3162 320 258 52 21 chr15 25908406 25908503 -59787251 + L2 LINE L2 3137 3236 -36 737 289 11 0 chr15 25909431 25909621 -59786133 - MIR SINE MIR -3 259 68 24 32 0 0 chr15 25911156 25911187 -59784567 + AT_rich Low_complexity Low_complexity 1 31 0 230 211 18 0 chr15 25912263 25912320 -59783434 + MER103 DNA DNA 24 81 -85 1327 154 110 3 chr15 25913412 25913704 -59782050 + MER33 DNA MER1_type 2 324 0 2403 70 3 13 chr15 25914917 25915229 -59780525 - AluY SINE Alu -2 309 1 507 312 47 29 chr15 25916455 25916795 -59778959 + MARNA DNA Mariner 193 538 -48 638 314 53 4 chr15 25917160 25917405 -59778349 + MIR SINE MIR 3 259 -3 186 367 18 46 chr15 25918984 25919093 -59776661 - L2 LINE L2 -35 3237 3132 290 361 19 0 chr15 25920972 25921080 -59774674 + MIR SINE MIR 82 191 -71 1041 298 57 21 chr15 25922572 25922992 -59772762 + LTR16B LTR ERVL 30 464 0 271 330 11 11 chr15 25923097 25923191 -59772563 - MIR3 SINE MIR -7 201 108 797 286 16 33 chr15 25923476 25923721 -59772033 + MIR SINE MIR 19 259 -3 307 309 49 57 chr15 25923827 25924073 -59771681 + L2 LINE L2 2827 3070 -202 2070 111 81 23 chr15 25924119 25924463 -59771291 + THE1B LTR MaLR 1 364 0 341 257 87 22 chr15 25924542 25924725 -59771029 + L1ME4a LINE L1 5725 5919 -202 265 318 110 13 chr15 25925001 25925155 -59770599 - L2 LINE L2 -876 2438 2270 2029 109 34 10 chr15 25925736 25926029 -59769725 + AluSx SINE Alu 1 300 -12 281 146 21 0 chr15 25927314 25927362 -59768392 - L2 LINE L2 0 3272 3224 194 254 36 0 chr15 25929309 25929364 -59766390 - L2 LINE L2 -1 3271 3215 195 42 0 0 chr15 25929858 25929882 -59765872 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 448 86 57 0 chr15 25930254 25930324 -59765430 + LTR2 LTR ERV1 373 446 -3 339 241 128 0 chr15 25930400 25930533 -59765221 + L1MD1 LINE L1 4563 4712 -1434 239 170 0 0 chr15 25930551 25930598 -59765156 + Alu SINE Alu 256 302 0 4687 174 16 43 chr15 25930598 25930908 -59764846 + L1MD1 LINE L1 5022 5339 -903 1881 162 0 7 chr15 25930908 25931198 -59764556 + AluSx SINE Alu 1 288 -24 4687 174 16 43 chr15 25931198 25932091 -59763663 + L1MD1 LINE L1 5339 6192 -50 1580 192 117 17 chr15 25932091 25932451 -59763303 + MSTD LTR MaLR 1 396 0 4687 174 16 43 chr15 25932451 25932496 -59763258 + L1MD1 LINE L1 6192 6237 -5 312 167 0 0 chr15 25932633 25932705 -59763049 + (TA)n Simple_repeat Simple_repeat 2 73 0 1781 155 31 31 chr15 25932705 25933060 -59762694 + MLT1A1 LTR MaLR 4 358 -7 1549 239 21 26 chr15 25934684 25935073 -59760681 - LTR16C LTR ERVL -7 484 98 235 240 173 13 chr15 25935717 25935792 -59759962 - L2 LINE L2 -5 3267 3181 22 0 0 0 chr15 25936010 25936032 -59759722 + AT_rich Low_complexity Low_complexity 1 22 0 235 278 157 26 chr15 25936217 25936332 -59759422 + MIR3 SINE MIR 38 167 -41 2395 98 0 0 chr15 25936574 25936880 -59758874 - AluY SINE Alu -5 306 1 219 234 43 0 chr15 25937581 25937628 -59758126 + MIR3 SINE MIR 139 187 -21 2225 109 0 0 chr15 25938966 25939260 -59756494 + AluSx SINE Alu 1 294 -18 250 222 0 71 chr15 25940864 25940963 -59754791 + HAL1b LINE L1 749 840 -508 21 0 0 0 chr15 25942106 25942127 -59753627 + AT_rich Low_complexity Low_complexity 1 21 0 603 309 14 24 chr15 25942148 25942358 -59753396 - MIR SINE MIR -48 214 7 2357 98 0 0 chr15 25942487 25942793 -59752961 - AluSg SINE Alu -4 306 1 3700 114 2 21 chr15 25943945 25944480 -59751274 + MER1A DNA MER1_type 3 527 0 195 129 0 0 chr15 25944766 25944797 -59750957 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 631 90 10 0 chr15 25945109 25945209 -59750545 + L1PA15 LINE L1 6065 6165 0 346 294 152 66 chr15 25945658 25945855 -59749899 - MIR SINE MIR -1 261 48 286 239 70 0 chr15 25946042 25946113 -59749641 - L2 LINE L2 -9 3304 3229 4912 173 45 15 chr15 25946114 25947027 -59748727 + L1MC3 LINE L1 6701 7650 -135 2503 58 0 32 chr15 25947027 25947340 -59748414 + AluY SINE Alu 1 303 -8 4912 173 45 15 chr15 25947340 25947476 -59748278 + L1MC3 LINE L1 7650 7781 -4 240 289 61 96 chr15 25947536 25947733 -59748021 - L2 LINE L2 -75 3197 3008 453 76 0 0 chr15 25949264 25949330 -59746424 + (CA)n Simple_repeat Simple_repeat 1 66 0 1298 154 9 14 chr15 25951386 25951607 -59744147 + AluJo SINE Alu 85 304 -8 329 266 57 8 chr15 25952218 25952342 -59743412 - MIR SINE MIR -51 211 82 785 209 69 56 chr15 25954065 25954371 -59741383 + L1MC5 LINE L1 7128 7437 -524 290 197 0 61 chr15 25954384 25954450 -59741304 + MER5C DNA MER1_type 15 76 -248 220 209 23 0 chr15 25954574 25954617 -59741137 - MER5C DNA MER1_type -248 76 33 1027 214 48 28 chr15 25954652 25955049 -59740705 + L1MC5 LINE L1 7452 7856 -105 687 112 0 0 chr15 25955991 25956089 -59739665 + AluY SINE Alu 213 310 -1 584 296 37 5 chr15 25957729 25957918 -59737836 - MIR SINE MIR -34 228 34 185 208 0 57 chr15 25959241 25959294 -59736460 + MIR SINE MIR 89 138 -70 360 259 17 17 chr15 25960068 25960184 -59735570 + GA-rich Low_complexity Low_complexity 2 117 0 414 0 0 0 chr15 25960185 25960231 -59735523 + (CA)n Simple_repeat Simple_repeat 1 46 0 293 246 175 47 chr15 25961411 25961622 -59734132 + MLT1G LTR MaLR 37 274 -281 215 308 67 0 chr15 25961763 25961867 -59733887 + MIR SINE MIR 31 141 -67 667 167 42 28 chr15 25962110 25962254 -59733500 + MLT1G LTR MaLR 445 590 0 189 351 117 32 chr15 25962380 25962662 -59733092 + L2 LINE L2 2454 2759 -555 251 323 50 10 chr15 25962760 25962859 -59732895 - MER91C DNA MER1_type -24 116 14 253 236 136 73 chr15 25963019 25963129 -59732625 - L2 LINE L2 -10 3303 3187 1053 203 82 0 chr15 25963152 25963359 -59732395 - MER58A DNA MER1_type 0 224 1 1133 148 0 0 chr15 25963365 25963527 -59732227 - FRAM SINE Alu -14 162 1 429 281 115 26 chr15 25963731 25963923 -59731831 + MIR SINE MIR 2 210 -52 512 303 14 7 chr15 25964548 25964693 -59731061 + MIR SINE MIR 102 247 -15 300 267 164 42 chr15 25967259 25967436 -59728318 + L1MC4a LINE L1 5613 5834 -1974 1906 122 39 3 chr15 25967436 25967722 -59728032 + AluSx SINE Alu 5 300 -12 300 267 164 42 chr15 25967722 25967806 -59727948 + L1MC4a LINE L1 5834 5906 -1902 243 290 0 0 chr15 25967831 25967893 -59727861 + (TA)n Simple_repeat Simple_repeat 2 63 0 26 30 0 0 chr15 25967955 25967988 -59727766 + AT_rich Low_complexity Low_complexity 1 33 0 231 36 0 0 chr15 25967996 25968024 -59727730 + (TG)n Simple_repeat Simple_repeat 2 29 0 195 250 225 0 chr15 25972242 25972322 -59723432 + MIR SINE MIR 87 184 -78 259 320 22 108 chr15 25972633 25972855 -59722899 - L2 LINE L2 -73 3199 2997 415 251 12 135 chr15 25972869 25972936 -59722818 - MER5B DNA MER1_type -1 177 140 1918 152 0 26 chr15 25972936 25973246 -59722508 + AluSx SINE Alu 5 306 -6 415 251 12 135 chr15 25973246 25973341 -59722413 - MER5B DNA MER1_type -38 140 35 225 292 0 42 chr15 25974329 25974401 -59721353 - L2 LINE L2 0 3313 3245 547 100 12 12 chr15 25974434 25974514 -59721240 - MADE1 DNA Mariner 0 80 1 1787 84 0 4 chr15 25974673 25974899 -59720855 - AluY SINE Alu -6 305 81 695 263 86 27 chr15 25975809 25976244 -59719510 + MLT1H LTR MaLR 3 546 -3 222 294 55 40 chr15 25976247 25976378 -59719376 - MIR SINE MIR -63 145 39 286 269 28 28 chr15 25976649 25976757 -59718997 + L2 LINE L2 3201 3308 -5 27 81 0 0 chr15 25977517 25977579 -59718175 + AT_rich Low_complexity Low_complexity 1 62 0 225 231 333 34 chr15 25978201 25978318 -59717436 - MER58 DNA MER1_type 0 2420 2269 * 862 211 27 11 chr15 25978309 25978494 -59717260 - MER58 DNA MER1_type -2232 188 1 204 40 0 0 chr15 25978583 25978608 -59717146 + (GGGTG)n Simple_repeat Simple_repeat 5 29 0 285 239 108 31 chr15 25978611 25978741 -59717013 - L2 LINE L2 -217 3055 2916 451 293 33 56 chr15 25979309 25979479 -59716275 + L2 LINE L2 2175 2341 -973 1615 241 90 44 chr15 25979479 25980044 -59715710 + MLT1E LTR MaLR 1 591 -2 451 293 33 56 chr15 25980044 25980088 -59715666 + L2 LINE L2 2341 2384 -930 450 306 30 8 chr15 25980475 25980609 -59715145 + MIR3 SINE MIR 20 156 -52 379 252 52 43 chr15 25980640 25980755 -59714999 - MER5A DNA MER1_type -26 163 48 229 331 66 37 chr15 25980649 25980785 -59714969 + MER5A DNA MER1_type 46 185 -4 * 341 294 33 6 chr15 25983469 25983635 -59712119 + LTR16A1 LTR ERVL 9 176 -274 2541 271 73 21 chr15 25983690 25984768 -59710986 + L1M4 LINE L1 3253 4386 -1760 2260 253 38 78 chr15 25984797 25985623 -59710131 + L1ME LINE L1 32 744 -5336 1820 109 35 0 chr15 25985623 25985880 -59709874 + L1PA16 LINE L1 5900 6165 -1 2260 253 38 78 chr15 25985880 25986589 -59709165 + L1ME LINE L1 744 1480 -4600 1061 216 36 4 chr15 25986613 25986891 -59708863 + L1ME LINE L1 4340 4626 -1454 457 162 0 0 chr15 25986885 25986959 -59708795 - L1M4 LINE L1 -3557 2589 2516 * 1436 166 40 12 chr15 25987399 25987652 -59708102 + AluJo SINE Alu 40 299 -13 666 179 135 13 chr15 25987665 25987862 -59707892 + L1ME LINE L1 5171 5391 -713 254 337 4 20 chr15 25988790 25988912 -59706842 + MIR SINE MIR 59 181 -27 1787 210 72 47 chr15 25989891 25990442 -59705312 - MLT1F1 LTR MaLR 0 567 1 185 264 42 28 chr15 25991145 25991217 -59704537 - MIR3 SINE MIR -3 205 133 324 102 0 0 chr15 25991366 25991415 -59704339 + (CA)n Simple_repeat Simple_repeat 2 50 0 2222 100 0 26 chr15 25991471 25991782 -59703972 + AluSc SINE Alu 1 303 -6 428 256 51 98 chr15 25991932 25992147 -59703607 - L2 LINE L2 -656 2658 2454 305 307 29 0 chr15 25992168 25992308 -59703446 + L1MC5 LINE L1 7758 7901 -60 625 258 201 11 chr15 25992363 25992716 -59703038 + L1ME4a LINE L1 5628 6047 -74 2062 133 3 3 chr15 25993998 25994306 -59701448 - AluSx SINE Alu -4 308 1 320 0 0 24 chr15 25995158 25995218 -59700536 + (TA)n Simple_repeat Simple_repeat 1 98 0 320 0 0 24 chr15 25995218 25995259 -59700495 + (TA)n Simple_repeat Simple_repeat 2 41 0 482 239 34 0 chr15 25996404 25996521 -59699233 + L2 LINE L2 3192 3312 -1 186 350 0 0 chr15 25997307 25997367 -59698387 - L3 LINE CR1 -2 1575 1516 379 239 102 62 chr15 25997605 25997781 -59697973 + MIR3 SINE MIR 19 201 -7 262 288 88 0 chr15 25997775 25997855 -59697899 - MIR SINE MIR -106 102 16 * 558 333 104 40 chr15 25998357 25998828 -59696926 + L2 LINE L2 2813 3313 0 239 263 105 11 chr15 25998824 25998919 -59696835 - MIR3 SINE MIR -102 106 3 * 454 253 82 7 chr15 25999533 25999679 -59696075 + MIR SINE MIR 97 253 -9 436 210 25 0 chr15 25999994 26000075 -59695679 + MER5A DNA MER1_type 30 112 -77 268 242 8 83 chr15 26000126 26000246 -59695508 + MIR SINE MIR 108 218 -44 273 57 0 0 chr15 26001508 26001543 -59694211 + (TG)n Simple_repeat Simple_repeat 2 36 0 424 178 74 52 chr15 26001954 26002089 -59693665 - L1MC4 LINE L1 -1 8041 7904 428 0 19 0 chr15 26002094 26002146 -59693608 + (CA)n Simple_repeat Simple_repeat 1 53 0 414 328 8 8 chr15 26003179 26003304 -59692450 - MIR SINE MIR -112 150 26 22 56 0 0 chr15 26004872 26004908 -59690846 + AT_rich Low_complexity Low_complexity 1 36 0 27 62 0 0 chr15 26005001 26005049 -59690705 + AT_rich Low_complexity Low_complexity 1 48 0 1593 162 50 20 chr15 26005398 26005701 -59690053 - Tigger3b DNA MER2_type 0 1231 920 4183 132 73 38 chr15 26005701 26006490 -59689264 - Tigger3b DNA MER2_type -413 818 2 1461 217 46 16 chr15 26007350 26007931 -59687823 - L1MCa LINE L1 -4066 2360 1707 * 23665 143 24 22 chr15 26007926 26010204 -59685550 + L1MA3 LINE L1 11 2284 -5440 2464 92 0 0 chr15 26010204 26010510 -59685244 - AluSq SINE Alu -7 306 1 23665 143 24 22 chr15 26010510 26012837 -59682917 + L1MA3 LINE L1 2284 4606 -3118 1989 145 3 0 chr15 26012837 26013127 -59682627 + AluSx SINE Alu 1 291 -21 23665 143 24 22 chr15 26013127 26013365 -59682389 + L1MA3 LINE L1 4606 4842 -2882 1500 96 20 5 chr15 26013365 26013557 -59682197 + L1PA10 LINE L1 5963 6164 -4 23665 143 24 22 chr15 26013557 26013758 -59681996 + L1MA3 LINE L1 4842 5041 -2683 321 82 0 0 chr15 26013758 26013807 -59681947 + (GA)n Simple_repeat Simple_repeat 1 49 0 23665 143 24 22 chr15 26013807 26016412 -59679342 + L1MA3 LINE L1 5041 7723 -1 782 167 98 122 chr15 26016426 26016764 -59678990 - L1MCa LINE L1 -4798 1628 1227 185 0 40 0 chr15 26016764 26016789 -59678965 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 782 167 98 122 chr15 26016789 26016916 -59678838 - L1MCa LINE L1 -5199 1227 1099 1718 100 0 0 chr15 26017694 26017914 -59677840 + AluSg/x SINE Alu 73 292 -18 1197 250 14 17 chr15 26018221 26018513 -59677241 + AluJb SINE Alu 1 291 -11 2994 261 130 35 chr15 26018552 26019811 -59675943 + L2 LINE L2 1632 3066 -247 1861 151 164 11 chr15 26019811 26020182 -59675572 + MSTA LTR MaLR 1 428 0 2994 261 130 35 chr15 26020182 26020455 -59675299 + L2 LINE L2 3066 3312 -1 411 298 70 35 chr15 26020727 26020898 -59674856 + MIR SINE MIR 10 186 -76 955 274 102 14 chr15 26021625 26022056 -59673698 + Tigger8 DNA MER2_type 196 664 -2 292 200 46 0 chr15 26022082 26022147 -59673607 + L1ME4a LINE L1 5977 6044 -77 353 171 11 0 chr15 26022204 26022292 -59673462 + (TA)n Simple_repeat Simple_repeat 2 90 0 214 244 22 0 chr15 26022796 26022841 -59672913 + L3 LINE CR1 1520 1565 -12 386 109 31 0 chr15 26024313 26024377 -59671377 + Alu SINE Alu 230 295 -5 375 181 0 0 chr15 26024980 26025052 -59670702 - L1PA16 LINE L1 -16 6150 6079 21 0 0 0 chr15 26025135 26025156 -59670598 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr15 26025525 26025545 -59670209 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 189 0 0 0 chr15 26025621 26025642 -59670112 + (T)n Simple_repeat Simple_repeat 1 21 0 780 254 55 95 chr15 26025752 26026098 -59669656 - L1M3d LINE L1 -5557 574 3 235 245 0 0 chr15 26027157 26027210 -59668544 - L2 LINE L2 0 3313 3261 182 277 169 0 chr15 26027871 26027936 -59667818 - MIR SINE MIR -12 250 175 1801 136 7 49 chr15 26027970 26028278 -59667476 + AluSx SINE Alu 1 295 -17 356 317 48 0 chr15 26028278 26028382 -59667372 - MIR SINE MIR -149 113 5 28 79 0 0 chr15 26029599 26029662 -59666092 + AT_rich Low_complexity Low_complexity 1 63 0 412 245 17 27 chr15 26030060 26030233 -59665521 + L1PA8A LINE L1 5676 5848 -283 4832 64 19 6 chr15 26030388 26031016 -59664738 + Charlie3 DNA MER1_type 1487 2122 -588 380 91 0 0 chr15 26031016 26031071 -59664683 - MLT2A1 LTR ERVL 0 444 390 261 211 0 0 chr15 26031071 26031128 -59664626 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 3243 55 2 2 chr15 26031130 26031530 -59664224 - MLT2A1 LTR ERVL -44 400 1 * 3614 77 37 0 chr15 26031530 26032011 -59663743 + Charlie3 DNA MER1_type 2118 2616 -94 428 236 160 0 chr15 26035450 26035594 -59660160 + MIR SINE MIR 25 191 -71 375 41 0 0 chr15 26035597 26035646 -59660108 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr15 26035910 26035932 -59659822 + AT_rich Low_complexity Low_complexity 1 22 0 216 100 0 25 chr15 26035974 26036014 -59659740 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 462 203 89 141 chr15 26037821 26038059 -59657695 - MIR SINE MIR -27 235 17 23 33 0 0 chr15 26039136 26039166 -59656588 + AT_rich Low_complexity Low_complexity 1 30 0 199 299 119 0 chr15 26039266 26039333 -59656421 + L3 LINE CR1 1492 1566 -11 559 243 72 20 chr15 26039882 26040034 -59655720 + MIR SINE MIR 68 227 -35 2210 89 7 0 chr15 26040599 26040881 -59654873 + AluSg SINE Alu 1 284 -26 28 48 0 0 chr15 26040881 26040923 -59654831 + AT_rich Low_complexity Low_complexity 1 42 0 265 326 0 11 chr15 26041112 26041201 -59654553 + MIR3 SINE MIR 15 102 -106 2187 269 85 40 chr15 26041409 26042411 -59653343 + L2 LINE L2 1966 3029 -284 1460 175 172 21 chr15 26042411 26042783 -59652971 + MSTA LTR MaLR 1 428 0 2187 269 85 40 chr15 26042783 26042817 -59652937 + L2 LINE L2 3029 3060 -253 418 292 77 30 chr15 26043123 26043291 -59652463 + MIR SINE MIR 10 185 -77 195 333 51 0 chr15 26043978 26044056 -59651698 - L2 LINE L2 -57 3215 3134 272 243 97 0 chr15 26044229 26044332 -59651422 + MER112 DNA MER1_type 147 259 -1 264 128 0 0 chr15 26044548 26044587 -59651167 + MLT1J LTR MaLR 97 135 -376 2287 125 11 13 chr15 26044806 26045182 -59650572 + THE1C LTR MaLR 1 375 0 812 312 60 40 chr15 26045314 26045715 -59650039 - LTR16A1 LTR ERVL 0 457 49 271 325 30 43 chr15 26046775 26046859 -59648895 + L1 LINE L1 3722 3806 -2340 2389 94 0 0 chr15 26046859 26047158 -59648596 - AluSg SINE Alu -11 299 1 271 325 30 43 chr15 26047158 26047304 -59648450 + L1 LINE L1 3806 3949 -2197 2236 102 3 0 chr15 26047352 26047647 -59648107 + AluSp SINE Alu 2 297 -16 201 74 0 0 chr15 26047722 26047749 -59648005 + (A)n Simple_repeat Simple_repeat 1 27 0 1666 172 35 7 chr15 26047751 26048036 -59647718 + AluJb SINE Alu 1 293 -19 395 287 63 92 chr15 26048224 26048500 -59647254 + L1 LINE L1 4051 4333 -1813 2067 141 0 0 chr15 26048500 26048805 -59646949 - AluSx SINE Alu -7 305 1 395 287 63 92 chr15 26048805 26049035 -59646719 + L1 LINE L1 4333 4568 -1578 2184 126 0 3 chr15 26049806 26050115 -59645639 + AluSg SINE Alu 1 308 -2 203 200 25 0 chr15 26050416 26050456 -59645298 + MIR SINE MIR 192 232 -30 196 216 0 0 chr15 26051639 26051676 -59644078 - MIR SINE MIR -10 252 216 424 277 0 48 chr15 26051835 26052060 -59643694 + A-rich Low_complexity Low_complexity 1 214 0 1184 276 117 74 chr15 26052066 26052148 -59643606 + L1MEd LINE L1 4 81 -6159 201 39 0 0 chr15 26052148 26052174 -59643580 + (TA)n Simple_repeat Simple_repeat 2 27 0 1184 276 117 74 chr15 26052174 26052571 -59643183 + L1MEd LINE L1 81 459 -5781 360 0 0 0 chr15 26052571 26052611 -59643143 + (CA)n Simple_repeat Simple_repeat 1 40 0 1184 276 117 74 chr15 26052611 26052778 -59642976 + L1MEd LINE L1 459 617 -5623 1576 95 0 0 chr15 26052778 26052999 -59642755 + L1PA13 LINE L1 5942 6162 -1 1184 276 117 74 chr15 26052999 26053632 -59642122 + L1MEd LINE L1 617 1378 -4862 337 275 70 37 chr15 26053664 26053908 -59641846 + L1M2 LINE L1 2310 2561 -4288 12662 166 35 46 chr15 26053965 26056941 -59638813 - L1MA6 LINE L1 0 6300 3385 1756 171 0 27 chr15 26056941 26057240 -59638514 - AluJo SINE Alu -21 291 1 12662 166 35 46 chr15 26057240 26058062 -59637692 - L1MA6 LINE L1 -2915 3385 2555 578 256 145 12 chr15 26058129 26058528 -59637226 + L1M2 LINE L1 2962 3413 -3435 359 307 67 13 chr15 26058677 26058827 -59636927 - L3 LINE CR1 -7 1570 1413 1257 237 54 128 chr15 26059271 26059330 -59636424 - HAL1 LINE L1 -111 2396 2334 1858 42 15 42 chr15 26059330 26059592 -59636162 - L1PA13 LINE L1 0 6163 5909 1257 237 54 128 chr15 26059592 26059618 -59636136 - HAL1 LINE L1 -173 2334 2308 1894 156 3 0 chr15 26059618 26059919 -59635835 - AluJb SINE Alu -10 302 1 1257 237 54 128 chr15 26059919 26060658 -59635096 - HAL1 LINE L1 -199 2308 1657 1944 135 4 7 chr15 26060658 26060939 -59634815 - AluJb SINE Alu -30 282 3 1257 237 54 128 chr15 26060939 26061126 -59634628 - HAL1 LINE L1 -850 1657 1458 521 149 0 0 chr15 26061251 26061338 -59634416 + AluJ/FRAM SINE Alu 216 302 -10 24 0 0 0 chr15 26061338 26061362 -59634392 + AT_rich Low_complexity Low_complexity 1 24 0 256 247 108 0 chr15 26061409 26061502 -59634252 + L1ME4a LINE L1 5968 6070 -51 1911 172 0 0 chr15 26061697 26062000 -59633754 - AluJb SINE Alu -9 303 1 363 291 45 77 chr15 26062000 26062220 -59633534 - L1MC4 LINE L1 -3 8039 7827 365 233 12 0 chr15 26062326 26062412 -59633342 - L1ME2 LINE L1 -30 6134 6048 315 230 124 58 chr15 26062413 26062639 -59633115 - L1ME LINE L1 -4385 1876 1636 3317 267 46 36 chr15 26062680 26062921 -59632833 - L1ME LINE L1 -4670 1410 1173 2421 91 0 0 chr15 26062921 26063229 -59632525 + AluY SINE Alu 3 310 -1 3317 267 46 36 chr15 26063229 26064387 -59631367 - L1ME LINE L1 -4907 1173 7 297 317 61 0 chr15 26064848 26064930 -59630824 + MIR3 SINE MIR 83 169 -39 2472 74 0 0 chr15 26064933 26065230 -59630524 - AluSg SINE Alu -13 297 1 228 267 0 40 chr15 26066358 26066433 -59629321 + MER5C DNA MER1_type 253 324 0 702 274 42 37 chr15 26066464 26066705 -59629049 - LTR33 LTR ERVL -264 257 16 189 0 0 0 chr15 26066784 26066805 -59628949 + (TTA)n Simple_repeat Simple_repeat 1 21 0 539 283 7 7 chr15 26067056 26067201 -59628553 + MLT2F LTR ERVL 3 147 -516 * 633 225 17 28 chr15 26067197 26067375 -59628379 + MLT1E3 LTR MaLR 46 221 -403 467 292 53 67 chr15 26067218 26067574 -59628180 + MLT2C1 LTR ERVL 45 395 -2 * 3453 144 50 3 chr15 26070338 26070940 -59624814 - LTR34 LTR ERV1 0 699 70 273 263 0 0 chr15 26070933 26070990 -59624764 - MLT1L LTR MaLR -231 384 328 * 464 279 130 35 chr15 26071072 26071326 -59624428 - MLT1L LTR MaLR -337 278 1 274 325 50 8 chr15 26071748 26071868 -59623886 + MIR SINE MIR 125 249 -13 678 180 53 0 chr15 26072926 26073076 -59622678 + L1MC3 LINE L1 7620 7777 -8 498 315 64 15 chr15 26074086 26074289 -59621465 + MIR SINE MIR 47 259 -3 2377 96 3 0 chr15 26074754 26075066 -59620688 - AluSq SINE Alu 0 313 1 383 176 45 182 chr15 26076109 26076158 -59619596 + L1MC4 LINE L1 7699 7753 -289 1547 179 20 36 chr15 26076158 26076459 -59619295 + AluJo SINE Alu 1 296 -16 383 176 45 182 chr15 26076459 26076739 -59619015 + L1MC4 LINE L1 7753 7983 -59 361 242 131 81 chr15 26077300 26077498 -59618256 + L1MEd LINE L1 943 1150 -4969 775 285 69 14 chr15 26077522 26077813 -59617941 + L2 LINE L2 3003 3309 -4 383 176 45 182 chr15 26077904 26077953 -59617801 + L1MC4 LINE L1 7699 7753 -289 1547 179 20 36 chr15 26077953 26078254 -59617500 + AluJo SINE Alu 1 296 -16 383 176 45 182 chr15 26078254 26078534 -59617220 + L1MC4 LINE L1 7753 7983 -59 259 269 164 8 chr15 26078735 26078869 -59616885 + L1M4b LINE L1 91 245 -6614 444 272 120 76 chr15 26079062 26079419 -59616335 + L1M4b LINE L1 828 1200 -5655 560 262 90 9 chr15 26079457 26079729 -59616025 + L1M4b LINE L1 1180 1477 -5382 1357 142 85 4 chr15 26079739 26079999 -59615755 + L1MB1 LINE L1 5888 6168 0 6153 86 9 15 chr15 26080111 26081385 -59614369 + L1PA8A LINE L1 4867 6129 -2 249 206 32 0 chr15 26081430 26081493 -59614261 - L1M4b LINE L1 -5303 1556 1492 1381 171 121 8 chr15 26081530 26081787 -59613967 + AluJo SINE Alu 1 286 -26 1108 148 43 10 chr15 26081841 26082050 -59613704 + L1MA4 LINE L1 6079 6294 -6 4678 255 65 28 chr15 26082050 26084152 -59611602 + L1M4b LINE L1 1758 3953 -3004 2255 99 3 13 chr15 26084152 26084465 -59611289 + AluSx SINE Alu 1 310 -2 4678 255 65 28 chr15 26084465 26085159 -59610595 + L1M4b LINE L1 3953 4620 -2337 33 43 0 0 chr15 26088552 26088599 -59607155 + AT_rich Low_complexity Low_complexity 1 47 0 336 330 118 38 chr15 26089272 26089663 -59606091 - L1M4 LINE L1 -3594 2552 2131 1059 80 7 0 chr15 26089811 26089949 -59605805 - AluJb SINE Alu -1 311 173 1179 150 0 0 chr15 26090327 26090500 -59605254 - FRAM SINE Alu -3 173 1 2186 102 7 0 chr15 26092787 26093081 -59602673 + AluSx SINE Alu 1 296 -16 355 237 131 81 chr15 26093743 26093941 -59601813 + L1MEd LINE L1 943 1150 -4969 23 0 0 0 chr15 26094911 26094934 -59600820 + AT_rich Low_complexity Low_complexity 1 23 0 2324 99 0 0 chr15 26095686 26095979 -59599775 + AluSx SINE Alu 1 293 -19 523 281 111 0 chr15 26096590 26096914 -59598840 + L1ME4a LINE L1 5710 6069 -52 198 0 0 0 chr15 26097558 26097580 -59598174 + (TG)n Simple_repeat Simple_repeat 1 22 0 440 206 81 38 chr15 26097580 26097740 -59598014 - LTR7 LTR ERV1 -46 404 238 239 371 65 8 chr15 26097861 26097985 -59597769 + MIR SINE MIR 25 155 -107 25 0 0 0 chr15 26098434 26098459 -59597295 + AT_rich Low_complexity Low_complexity 1 25 0 243 340 136 48 chr15 26098756 26099050 -59596704 - L2 LINE L2 -5 3267 2948 613 315 45 38 chr15 26099078 26099345 -59596409 - L2 LINE L2 -447 2867 2599 384 324 79 86 chr15 26099426 26099880 -59595874 - L2 LINE L2 -1 3271 2821 414 265 39 0 chr15 26100229 26100331 -59595423 + L2 LINE L2 3203 3308 -5 261 297 0 0 chr15 26100860 26100935 -59594819 + MIR SINE MIR 44 118 -90 3098 220 64 69 chr15 26100965 26101278 -59594476 + L1MC4 LINE L1 6749 7062 -980 237 108 0 0 chr15 26101278 26101315 -59594439 + (TAGG)n Simple_repeat Simple_repeat 3 39 0 3098 220 64 69 chr15 26101315 26102302 -59593452 + L1MC4 LINE L1 7062 8042 0 210 284 0 15 chr15 26102316 26102383 -59593371 + MIR SINE MIR 184 249 -13 27 49 0 0 chr15 26102407 26102448 -59593306 + AT_rich Low_complexity Low_complexity 1 41 0 565 249 41 32 chr15 26102681 26102902 -59592852 + L1ME3A LINE L1 5727 5949 -221 866 123 10 123 chr15 26105237 26105432 -59590322 - AluSg/x SINE Alu -6 306 134 240 196 0 36 chr15 26106757 26106813 -59588941 + MIR3 SINE MIR 142 195 -13 1162 55 0 0 chr15 26107609 26107754 -59588000 - L1PA8 LINE L1 -7 6165 6021 243 277 0 0 chr15 26108838 26108903 -59586851 + (TA)n Simple_repeat Simple_repeat 2 66 0 486 283 83 46 chr15 26109304 26109544 -59586210 + MIR SINE MIR 7 255 -7 283 297 59 20 chr15 26109567 26109668 -59586086 + MIR3 SINE MIR 88 192 -16 948 164 41 0 chr15 26110114 26110285 -59585469 + MER5B DNA MER1_type 1 178 0 587 225 87 64 chr15 26110490 26110541 -59585213 + MER5A DNA MER1_type 10 58 -131 2272 106 0 3 chr15 26110541 26110843 -59584911 + AluSx SINE Alu 1 301 -11 587 225 87 64 chr15 26110843 26110964 -59584790 + MER5A DNA MER1_type 58 186 -3 21 36 0 0 chr15 26112978 26113006 -59582748 + AT_rich Low_complexity Low_complexity 1 28 0 858 261 47 0 chr15 26113027 26113242 -59582512 + Charlie1 DNA MER1_type 20 244 -2517 586 139 148 0 chr15 26113223 26113345 -59582409 + Charlie1 DNA MER1_type 2622 2761 0 * 946 164 41 0 chr15 26165342 26165513 -59530241 + MER5B DNA MER1_type 1 178 0 596 225 87 64 chr15 26165718 26165769 -59529985 + MER5A DNA MER1_type 10 58 -131 2304 105 0 3 chr15 26165769 26166073 -59529681 + AluSx SINE Alu 1 303 -9 596 225 87 64 chr15 26166073 26166194 -59529560 + MER5A DNA MER1_type 58 186 -3 255 266 35 53 chr15 26166914 26167083 -59528671 - L1M4 LINE L1 -1472 4674 4509 263 303 0 81 chr15 26167144 26167243 -59528511 + L3b LINE CR1 1244 1334 -249 261 214 57 0 chr15 26167324 26167394 -59528360 - MIR SINE MIR -34 228 155 21 36 0 0 chr15 26168727 26168755 -59526999 + AT_rich Low_complexity Low_complexity 1 28 0 858 261 47 0 chr15 26168776 26168991 -59526763 + Charlie1 DNA MER1_type 20 244 -2517 586 139 148 0 chr15 26168972 26169094 -59526660 + Charlie1 DNA MER1_type 2622 2761 0 * 2424 80 3 0 chr15 26170727 26171026 -59524728 + AluSx SINE Alu 1 300 -12 273 281 0 34 chr15 26172526 26172615 -59523139 + L1MD2 LINE L1 5997 6082 -277 247 91 45 0 chr15 26172697 26172741 -59523013 - L1PA7 LINE L1 -1 6153 6108 2640 35 3 6 chr15 26172975 26173287 -59522467 - AluY SINE Alu 0 311 1 25 0 0 0 chr15 26176263 26176288 -59519466 + AT_rich Low_complexity Low_complexity 1 25 0 562 297 66 8 chr15 26176465 26176724 -59519030 - L1MD3 LINE L1 -14 7981 7708 401 182 0 0 chr15 26176960 26177026 -59518728 + AluJ/FLAM SINE Alu 8 73 -229 2101 168 3 3 chr15 26178418 26178782 -59516972 - MER47A DNA MER2_type 0 366 3 1757 177 3 3 chr15 26178886 26179180 -59516574 + AluJb SINE Alu 1 294 -18 1291 253 22 25 chr15 26179970 26180334 -59515420 + L1MEc LINE L1 35 397 -5999 2051 244 124 13 chr15 26180373 26181210 -59514544 + L1MEc LINE L1 518 1447 -4949 641 266 78 64 chr15 26181208 26181835 -59513919 + L1MEc LINE L1 458 1093 -5112 * 31 0 0 0 chr15 26182144 26182175 -59513579 + AT_rich Low_complexity Low_complexity 1 31 0 310 235 205 42 chr15 26182228 26182385 -59513369 + L1MEc LINE L1 1527 1714 -4682 1266 163 23 42 chr15 26182385 26182691 -59513063 + L1MB8 LINE L1 5879 6178 0 353 260 71 52 chr15 26183203 26183357 -59512397 + L1ME4a LINE L1 5571 5727 -394 280 179 57 66 chr15 26183542 26183648 -59512106 + L1ME4a LINE L1 5985 6089 -32 1961 195 100 11 chr15 26183681 26184142 -59511612 + L1MC3 LINE L1 7284 7785 0 345 62 0 0 chr15 26184229 26184277 -59511477 + (TG)n Simple_repeat Simple_repeat 1 48 0 21 71 0 0 chr15 26184445 26184487 -59511267 + AT_rich Low_complexity Low_complexity 1 42 0 2350 88 3 0 chr15 26185430 26185727 -59510027 + AluSp SINE Alu 1 298 -15 237 287 115 25 chr15 26186030 26186152 -59509602 + MIR3 SINE MIR 40 172 -36 449 258 129 49 chr15 26186264 26186489 -59509265 - MIR SINE MIR 0 262 20 249 298 9 53 chr15 26187491 26187605 -59508149 + L2 LINE L2 3137 3245 -27 21 0 0 0 chr15 26188131 26188152 -59507602 + AT_rich Low_complexity Low_complexity 1 21 0 231 227 45 45 chr15 26188794 26188860 -59506894 - MIR3 SINE MIR -51 157 92 955 274 102 14 chr15 26189931 26190362 -59505392 + Tigger8 DNA MER2_type 196 664 -2 292 200 46 0 chr15 26190388 26190453 -59505301 + L1ME4a LINE L1 5977 6044 -77 353 171 11 0 chr15 26190510 26190598 -59505156 + (TA)n Simple_repeat Simple_repeat 2 90 0 375 181 0 0 chr15 26191424 26191496 -59504258 - L1PA16 LINE L1 -16 6150 6079 21 0 0 0 chr15 26191579 26191600 -59504154 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr15 26191969 26191989 -59503765 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 2080 137 3 13 chr15 26192065 26192372 -59503382 - AluJb SINE Alu -8 304 1 259 203 0 25 chr15 26192433 26192512 -59503242 + (TAAA)n Simple_repeat Simple_repeat 2 78 0 2400 75 0 34 chr15 26193225 26193546 -59502208 - AluSx SINE Alu -2 310 1 2297 170 59 43 chr15 26194381 26194874 -59500880 + MLT1D LTR MaLR 5 505 0 558 294 108 30 chr15 26195115 26195384 -59500370 - L2 LINE L2 -38 3275 2986 306 187 94 158 chr15 26195445 26195478 -59500276 + MARNA DNA Mariner 210 244 -342 2234 95 3 3 chr15 26195478 26195774 -59499980 - AluSq SINE Alu -17 296 1 306 187 94 158 chr15 26195774 26195911 -59499843 + MARNA DNA Mariner 244 369 -217 1617 119 123 8 chr15 26196444 26196723 -59499031 - AluSg1 SINE Alu 0 308 1 41 0 0 0 chr15 26196725 26196766 -59498988 + AT_rich Low_complexity Low_complexity 1 41 0 2163 87 11 0 chr15 26196910 26197196 -59498558 - AluY SINE Alu -22 289 1 2143 107 3 20 chr15 26197727 26198026 -59497728 - AluSx SINE Alu -16 296 3 217 293 129 9 chr15 26198072 26198188 -59497566 + MIR3 SINE MIR 40 169 -39 678 191 92 72 chr15 26198433 26198684 -59497070 - MER112 DNA MER1_type 0 256 1 743 170 63 6 chr15 26198951 26199110 -59496644 + L1PA16 LINE L1 5996 6163 -3 22 80 0 0 chr15 26200385 26200435 -59495319 + AT_rich Low_complexity Low_complexity 1 50 0 274 235 0 0 chr15 26200444 26200495 -59495259 - tRNA-Asp-GAC tRNA tRNA -24 51 1 1148 204 21 41 chr15 26200543 26200882 -59494872 - L1MC5 LINE L1 -29 7932 7601 315 0 0 0 chr15 26201196 26201231 -59494523 + (CA)n Simple_repeat Simple_repeat 2 36 0 2093 108 24 10 chr15 26206656 26206952 -59488802 + AluSx SINE Alu 1 300 -12 26 30 0 0 chr15 26208333 26208366 -59487388 + AT_rich Low_complexity Low_complexity 1 33 0 285 189 103 178 chr15 26208860 26209045 -59486709 - MER102a DNA MER1_type -3 327 157 189 236 18 36 chr15 26209435 26209490 -59486264 - MIR SINE MIR -12 250 197 334 303 76 21 chr15 26209498 26209643 -59486111 + L2 LINE L2 2635 2787 -527 643 284 53 66 chr15 26209779 26210216 -59485538 + L2 LINE L2 2831 3261 -52 489 222 64 35 chr15 26211439 26211610 -59484144 - MER104 DNA MER2_type -4 176 1 1359 13 0 0 chr15 26212107 26212259 -59483495 + AluYb8 SINE Alu 155 306 -12 331 297 108 42 chr15 26213139 26213425 -59482329 + L1M4 LINE L1 5270 5574 -600 240 245 302 0 chr15 26213832 26213938 -59481816 + L2 LINE L2 3172 3309 -4 225 306 0 0 chr15 26213965 26214027 -59481727 - L2 LINE L2 0 3313 3252 569 271 92 24 chr15 26214245 26214452 -59481302 + MIR SINE MIR 1 221 -41 212 194 0 0 chr15 26217218 26217254 -59478500 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 585 277 25 35 chr15 26217566 26217768 -59477986 - MIR SINE MIR -49 213 14 416 303 74 6 chr15 26218677 26218839 -59476915 + MIR SINE MIR 20 192 -70 245 231 19 0 chr15 26219157 26219209 -59476545 - L2 LINE L2 -6 3307 3255 411 211 105 0 chr15 26219680 26219794 -59475960 + MLT1C LTR MaLR 8 133 -334 909 205 118 31 chr15 26219901 26220193 -59475561 + MLT1C LTR MaLR 134 465 -2 2063 133 3 0 chr15 26220772 26221073 -59474681 + AluSx SINE Alu 5 306 -6 189 100 0 0 chr15 26221292 26221305 -59474449 + (TAAG)n Simple_repeat Simple_repeat 2 14 -17 2153 84 0 52 chr15 26221305 26221614 -59474140 + AluY SINE Alu 1 293 -18 189 100 0 0 chr15 26221614 26221630 -59474124 + (TAAG)n Simple_repeat Simple_repeat 13 31 0 21 0 0 0 chr15 26222376 26222397 -59473357 + AT_rich Low_complexity Low_complexity 1 21 0 399 220 106 23 chr15 26222482 26222614 -59473140 - LTR16A1 LTR ERVL -49 408 266 1189 153 70 8 chr15 26223115 26223357 -59472397 - L1MD1 LINE L1 -7 6471 6215 976 181 0 6 chr15 26223357 26223528 -59472226 - MLT1A1 LTR MaLR -2 363 194 311 73 0 0 chr15 26223628 26223669 -59472085 - MLT1A1 LTR MaLR -324 41 1 2886 167 41 28 chr15 26223672 26223733 -59472021 - L1MD1 LINE L1 -271 6207 6148 195 42 0 0 chr15 26223733 26223757 -59471997 + (TA)n Simple_repeat Simple_repeat 1 24 0 2886 167 41 28 chr15 26223757 26224342 -59471412 - L1MD1 LINE L1 -330 6148 5549 1889 152 7 3 chr15 26224342 26224644 -59471110 - AluSx SINE Alu -9 303 1 2886 167 41 28 chr15 26224644 26224685 -59471069 - L1MD1 LINE L1 -929 5549 5510 331 278 139 0 chr15 26224796 26224940 -59470814 - AluSc SINE Alu -8 291 128 396 221 160 0 chr15 26225057 26225188 -59470566 - L1MD1 LINE L1 -1081 5301 5150 1943 166 39 35 chr15 26225188 26225737 -59470017 - MLT2A2 LTR ERVL 0 554 1 4631 228 43 38 chr15 26225737 26226665 -59469089 - L1MD1 LINE L1 -1228 5154 4213 1599 204 3 10 chr15 26226665 26226959 -59468795 - AluJb SINE Alu -20 292 1 4631 228 43 38 chr15 26226959 26227650 -59468104 - L1MD1 LINE L1 -2169 4213 3527 854 245 49 21 chr15 26228159 26228613 -59467141 + LTR33 LTR ERVL 1 499 -22 358 298 23 8 chr15 26229628 26229759 -59465995 - MIR3 SINE MIR -3 205 73 198 128 0 0 chr15 26230078 26230117 -59465637 + (T)n Simple_repeat Simple_repeat 1 39 0 1632 153 23 0 chr15 26231184 26231446 -59464308 - AluSg SINE Alu -14 296 29 317 215 32 11 chr15 26232174 26232267 -59463487 + L1MC4 LINE L1 7701 7795 -247 1422 162 13 0 chr15 26232369 26232598 -59463156 + AluSg/x SINE Alu 75 306 -6 1385 209 51 18 chr15 26232598 26233047 -59462707 - L1MD1 LINE L1 -3904 2480 2017 592 188 10 0 chr15 26233061 26233162 -59462592 + Tigger3(Golem) DNA MER2_type 2 103 -2926 6793 134 23 13 chr15 26233168 26234364 -59461390 + Tigger3(Golem) DNA MER2_type 1821 3028 -1 561 163 0 0 chr15 26234566 26234664 -59461090 + AluSp/q SINE Alu 211 308 -5 2250 221 49 31 chr15 26234664 26235597 -59460157 - L1MD1 LINE L1 -4516 1787 800 691 271 45 90 chr15 26235969 26236390 -59459364 - L1M3d LINE L1 -5487 644 3 236 245 0 0 chr15 26237449 26237502 -59458252 - L2 LINE L2 0 3313 3261 1813 136 7 49 chr15 26238262 26238570 -59457184 + AluSx SINE Alu 1 295 -17 354 317 48 0 chr15 26238570 26238674 -59457080 - MIR SINE MIR -149 113 5 28 79 0 0 chr15 26239891 26239954 -59455800 + AT_rich Low_complexity Low_complexity 1 63 0 381 241 13 26 chr15 26240353 26240499 -59455255 + L1ME LINE L1 5678 5824 -297 1107 209 5 0 chr15 26240576 26240782 -59454972 + MER82 DNA MER2_type 447 653 0 235 260 83 39 chr15 26241067 26241248 -59454506 + L1 LINE L1 4800 4988 -1158 625 313 58 7 chr15 26241314 26241589 -59454165 + L1 LINE L1 3080 3368 -2778 1038 275 69 3 chr15 26242206 26242526 -59453228 + MLT1J LTR MaLR 1 341 -170 337 104 0 0 chr15 26243017 26243065 -59452689 - tRNA-Thr-ACT tRNA tRNA -29 48 1 557 300 142 3 chr15 26243835 26244158 -59451596 + LTR16A LTR ERVL 78 445 -5 1799 172 13 7 chr15 26245017 26245325 -59450429 + AluJb SINE Alu 1 310 -2 1353 205 72 74 chr15 26245325 26245755 -59449999 + MLT1C LTR MaLR 39 467 0 24 0 0 0 chr15 26246415 26246439 -59449315 + AT_rich Low_complexity Low_complexity 1 24 0 238 282 164 58 chr15 26246603 26246966 -59448788 + L2 LINE L2 2646 3083 -189 2383 116 31 0 chr15 26246989 26247342 -59448412 + THE1B LTR MaLR 1 364 0 797 262 64 14 chr15 26247711 26248165 -59447589 + Charlie7 DNA MER1_type 180 711 -1901 872 220 0 0 chr15 26248353 26248512 -59447242 - FRAM SINE Alu -7 159 1 693 292 46 5 chr15 26248540 26248735 -59447019 + MIR SINE MIR 47 249 -13 437 312 118 76 chr15 26248774 26249104 -59446650 + L2 LINE L2 2928 3271 -1 2484 74 3 0 chr15 26250070 26250380 -59445374 + AluSp SINE Alu 1 311 -2 489 331 98 42 chr15 26251581 26251916 -59443838 + L2 LINE L2 2914 3267 -5 2084 126 0 0 chr15 26252270 26252555 -59443199 + AluSx SINE Alu 1 285 -27 206 0 69 0 chr15 26252558 26252587 -59443167 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 30 0 0 0 chr15 26252701 26252731 -59443023 + AT_rich Low_complexity Low_complexity 1 30 0 248 355 163 35 chr15 26254097 26254466 -59441288 - L2 LINE L2 -551 2763 2348 5722 153 26 14 chr15 26254621 26256480 -59439274 + L1PA16 LINE L1 4279 6156 -10 1322 143 0 17 chr15 26256480 26256709 -59439045 + L1PA15 LINE L1 5940 6165 0 5722 153 26 14 chr15 26256709 26256721 -59439033 + L1PA16 LINE L1 6156 6166 0 240 305 105 77 chr15 26259405 26259690 -59436064 + L3b LINE CR1 1137 1429 -154 333 0 0 0 chr15 26259983 26260020 -59435734 + (TG)n Simple_repeat Simple_repeat 1 37 0 222 304 0 14 chr15 26260245 26260314 -59435440 + L2 LINE L2 3246 3313 0 326 242 73 20 chr15 26260668 26260765 -59434989 + MIR SINE MIR 8 108 -100 797 163 0 8 chr15 26261080 26261209 -59434545 - FLAM_A SINE Alu -5 128 1 569 269 153 34 chr15 26262862 26263397 -59432357 - L1ME4a LINE L1 -2 6119 5521 608 290 21 21 chr15 26263577 26263770 -59431984 + MIR SINE MIR 70 262 0 224 282 47 47 chr15 26263866 26263951 -59431803 - MIR SINE MIR 0 262 178 2698 42 0 0 chr15 26264160 26264469 -59431285 - AluY SINE Alu -2 309 1 338 350 42 21 chr15 26265253 26265396 -59430358 - MIR SINE MIR -108 154 9 667 268 63 66 chr15 26266381 26266557 -59429197 - L2 LINE L2 0 3313 3137 517 104 26 0 chr15 26266557 26266634 -59429120 - MADE1 DNA Mariner 0 80 2 667 268 63 66 chr15 26266634 26266774 -59428980 - L2 LINE L2 -176 3137 2998 261 75 0 0 chr15 26266816 26266856 -59428898 + (CA)n Simple_repeat Simple_repeat 2 41 0 381 250 78 23 chr15 26268918 26269046 -59426708 - MIR SINE MIR -28 234 100 256 150 0 0 chr15 26269164 26269204 -59426550 - tRNA-Thr-ACT tRNA tRNA -37 40 1 511 83 0 14 chr15 26270018 26270090 -59425664 + Alu SINE Alu 224 294 -17 231 254 18 0 chr15 26271596 26271651 -59424103 + MLT1K LTR MaLR 145 200 -388 252 290 0 29 chr15 26271729 26271798 -59423956 + MLT1K LTR MaLR 322 388 -200 502 260 53 12 chr15 26272182 26272351 -59423403 + L1ME3A LINE L1 5572 5747 -423 700 209 165 12 chr15 26272401 26272655 -59423099 + L1ME3A LINE L1 5870 6162 -8 2396 71 10 0 chr15 26272705 26273002 -59422752 + AluY SINE Alu 1 300 -11 361 241 214 21 chr15 26273113 26273300 -59422454 + L1M4 LINE L1 4485 4707 -1439 14314 91 39 3 chr15 26273588 26275637 -59420117 + Charlie3 DNA MER1_type 1 2122 -588 364 91 0 0 chr15 26275637 26275692 -59420062 - MLT2A1 LTR ERVL 0 444 390 261 211 0 0 chr15 26275692 26275749 -59420005 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 3087 55 2 2 chr15 26275751 26276151 -59419603 - MLT2A1 LTR ERVL -44 400 1 * 3437 75 42 2 chr15 26276151 26276631 -59419123 + Charlie3 DNA MER1_type 2118 2616 -94 425 236 160 0 chr15 26280070 26280214 -59415540 + MIR SINE MIR 25 191 -71 375 41 0 0 chr15 26280217 26280266 -59415488 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr15 26280530 26280552 -59415202 + AT_rich Low_complexity Low_complexity 1 22 0 216 100 0 25 chr15 26280594 26280634 -59415120 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 461 203 89 141 chr15 26282444 26282682 -59413072 - MIR SINE MIR -27 235 17 23 33 0 0 chr15 26283868 26283898 -59411856 + AT_rich Low_complexity Low_complexity 1 30 0 198 299 119 0 chr15 26283999 26284066 -59411688 + L3 LINE CR1 1492 1566 -11 556 243 72 20 chr15 26284615 26284767 -59410987 + MIR SINE MIR 68 227 -35 2213 89 7 0 chr15 26285332 26285614 -59410140 + AluSg SINE Alu 1 284 -26 28 48 0 0 chr15 26285614 26285656 -59410098 + AT_rich Low_complexity Low_complexity 1 42 0 273 326 36 69 chr15 26285845 26286106 -59409648 + MIR3 SINE MIR 15 262 0 665 215 60 7 chr15 26286635 26286784 -59408970 + MIR SINE MIR 2 158 -104 1637 214 25 23 chr15 26286795 26287276 -59408478 + L1 LINE L1 2926 3407 -2739 4331 116 12 22 chr15 26287279 26287967 -59407787 + L1MB3 LINE L1 5452 6134 -49 1861 127 51 14 chr15 26287967 26288259 -59407495 + AluSx SINE Alu 1 303 -9 4331 116 12 22 chr15 26288259 26288301 -59407453 + L1MB3 LINE L1 6134 6175 -8 239 281 0 0 chr15 26288331 26288388 -59407366 + MIR SINE MIR 203 259 -3 463 328 11 17 chr15 26288739 26288916 -59406838 + MIR3 SINE MIR 3 178 -30 2480 74 0 0 chr15 26288919 26289229 -59406525 + AluY SINE Alu 2 311 0 721 326 12 12 chr15 26289351 26289593 -59406161 - MIR SINE MIR 0 262 21 268 289 39 72 chr15 26289708 26289888 -59405866 - MIR3 SINE MIR 0 208 35 202 266 31 0 chr15 26290183 26290247 -59405507 + MIR SINE MIR 196 261 -1 21 36 0 0 chr15 26291092 26291120 -59404634 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr15 26291193 26291222 -59404532 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2365 49 0 3 chr15 26291226 26291511 -59404243 - AluY SINE Alu -27 284 1 1416 82 0 5 chr15 26292054 26292238 -59403516 + AluSq SINE Alu 119 301 -12 209 132 26 0 chr15 26292299 26292337 -59403417 + (TAA)n Simple_repeat Simple_repeat 3 41 0 1151 180 62 5 chr15 26292700 26292911 -59402843 - MER58A DNA MER1_type -1 223 1 328 251 137 76 chr15 26292963 26293174 -59402580 + L1ME LINE L1 5383 5606 -515 713 122 211 0 chr15 26293191 26293314 -59402440 + FRAM SINE Alu 4 152 -24 21 0 0 0 chr15 26294123 26294144 -59401610 + AT_rich Low_complexity Low_complexity 1 21 0 1553 161 3 63 chr15 26294144 26294461 -59401293 - AluJo SINE Alu -14 298 1 495 351 52 0 chr15 26294468 26294679 -59401075 - MIR SINE MIR -13 249 28 1598 176 7 24 chr15 26295157 26295452 -59400302 + AluJo SINE Alu 1 290 -22 369 197 0 0 chr15 26295537 26295613 -59400141 + CT-rich Low_complexity Low_complexity 1 76 0 249 172 69 0 chr15 26295756 26295814 -59399940 - L1 LINE L1 -1960 4186 4125 2295 119 0 0 chr15 26295822 26296172 -59399582 - AluSx SINE Alu 0 350 1 276 30 0 0 chr15 26297064 26297097 -59398657 + (CA)n Simple_repeat Simple_repeat 1 33 0 261 0 0 0 chr15 26297312 26297341 -59398413 + (CA)n Simple_repeat Simple_repeat 2 30 0 2050 132 4 0 chr15 26298740 26299055 -59396699 + AluSx SINE Alu 1 316 0 552 272 80 6 chr15 26299338 26299500 -59396254 - MER5A DNA MER1_type -1 188 15 2223 122 3 0 chr15 26299781 26300092 -59395662 + AluSx SINE Alu 1 312 0 692 230 22 28 chr15 26300271 26300449 -59395305 - MER5B DNA MER1_type 0 178 2 1479 204 35 27 chr15 26300453 26300791 -59394963 - MER58B DNA MER1_type 0 341 1 413 276 55 16 chr15 26301268 26301395 -59394359 + MIR SINE MIR 29 160 -102 1997 155 0 3 chr15 26301474 26301777 -59393977 + AluJb SINE Alu 1 302 -10 980 249 65 29 chr15 26302067 26302452 -59393302 + LTR16A LTR ERVL 30 428 -22 600 139 228 89 chr15 26303198 26303302 -59392452 + MER5A DNA MER1_type 9 97 -92 189 0 0 0 chr15 26303302 26303323 -59392431 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 943 181 0 12 chr15 26303324 26303484 -59392270 - FAM SINE Alu -17 158 1 600 139 228 89 chr15 26303484 26303535 -59392219 + MER5A DNA MER1_type 96 188 -1 376 305 7 64 chr15 26303778 26303919 -59391835 + MIR SINE MIR 51 183 -79 221 351 0 0 chr15 26304481 26304538 -59391216 + C-rich Low_complexity Low_complexity 1 57 0 193 231 0 26 chr15 26304681 26304720 -59391034 + L2 LINE L2 134 171 -3143 251 321 18 9 chr15 26305973 26306082 -59389672 + CT-rich Low_complexity Low_complexity 2 111 0 274 225 22 34 chr15 26306299 26306388 -59389366 + LTR67 LTR ERVL 456 543 -14 1284 127 11 0 chr15 26306773 26306962 -59388792 - AluSg/x SINE Alu -1 311 121 2325 136 3 0 chr15 26306975 26307342 -59388412 - L1PB1 LINE L1 -2 6149 5782 252 184 0 0 chr15 26307374 26307423 -59388331 + (TG)n Simple_repeat Simple_repeat 2 50 0 14202 188 33 14 chr15 26307424 26313581 -59382173 - L1P1 LINE L1 -364 6507 114 947 127 0 0 chr15 26313585 26313719 -59382035 - AluJb SINE Alu -177 135 2 350 284 86 0 chr15 26313847 26313963 -59381791 + MIR SINE MIR 26 151 -57 1346 127 68 24 chr15 26314308 26314560 -59381194 - L1MB3 LINE L1 -17 6166 5904 743 171 30 6 chr15 26314562 26314726 -59381028 - L1MB3 LINE L1 -779 5367 5200 237 226 0 19 chr15 26314756 26314809 -59380945 - L2 LINE L2 -5 3267 3216 405 0 0 0 chr15 26315833 26315878 -59379876 + (CA)n Simple_repeat Simple_repeat 1 45 0 441 0 0 0 chr15 26316803 26316852 -59378902 + (TG)n Simple_repeat Simple_repeat 2 50 0 1699 194 41 0 chr15 26318855 26319148 -59376606 - AluJb SINE Alu -7 305 1 545 242 8 0 chr15 26319217 26319337 -59376417 + L2 LINE L2 2949 3069 -244 2508 55 0 23 chr15 26319571 26319879 -59375875 - AluY SINE Alu -9 302 2 461 103 0 15 chr15 26320066 26320134 -59375620 - AluJ/FLAM SINE Alu -245 67 1 450 273 97 11 chr15 26320179 26320355 -59375399 + L1MB3 LINE L1 5540 5730 -391 710 161 8 8 chr15 26320361 26320479 -59375275 + FLAM_C SINE Alu 1 118 -15 431 154 33 0 chr15 26320484 26320575 -59375179 + GA-rich Low_complexity Low_complexity 4 97 0 2461 126 4 67 chr15 26320606 26320891 -59374863 + L1MB3 LINE L1 5734 5979 -204 2206 113 10 3 chr15 26320891 26321192 -59374562 - AluSq SINE Alu -10 303 1 2461 126 4 67 chr15 26321192 26321382 -59374372 + L1MB3 LINE L1 5979 6179 -4 336 200 107 40 chr15 26321481 26321631 -59374123 + L1ME4a LINE L1 5962 6121 0 315 254 44 61 chr15 26321697 26321811 -59373943 + L2 LINE L2 3128 3239 -74 201 146 49 0 chr15 26321852 26321893 -59373861 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 1463 214 83 3 chr15 26321914 26322251 -59373503 - MLT1A1 LTR MaLR 0 365 2 388 300 79 37 chr15 26322387 26322577 -59373177 + L3 LINE CR1 1119 1316 -261 262 324 0 0 chr15 26322551 26322619 -59373135 - L2 LINE L2 -4 3268 3201 * 2121 118 23 0 chr15 26322829 26323134 -59372620 + AluSx SINE Alu 1 312 0 1770 174 7 3 chr15 26323195 26323500 -59372254 - AluJo SINE Alu -6 306 1 774 227 89 49 chr15 26324757 26324982 -59370772 + MIR SINE MIR 13 246 -16 375 377 113 21 chr15 26325270 26325737 -59370017 - L2 LINE L2 -585 2729 2220 2318 121 0 0 chr15 26326014 26326319 -59369435 - AluSx SINE Alu -7 305 1 661 311 148 22 chr15 26327040 26327577 -59368177 + L2 LINE L2 2670 3272 0 226 315 32 14 chr15 26328972 26329097 -59366657 - MIR SINE MIR -62 146 40 996 104 0 0 chr15 26330074 26330208 -59365546 + FRAM SINE Alu 28 161 -15 367 301 84 52 chr15 26330428 26330714 -59365040 + L2 LINE L2 1800 2094 -1220 532 212 30 0 chr15 26330751 26330850 -59364904 + MER5B DNA MER1_type 1 102 -76 2380 101 3 0 chr15 26331776 26332083 -59363671 + AluSx SINE Alu 1 308 -4 236 232 8 16 chr15 26332086 26332210 -59363544 + GA-rich Low_complexity Low_complexity 1 123 0 869 240 125 48 chr15 26332535 26333103 -59362651 + L1MC4a LINE L1 5317 5967 -1841 2090 104 7 4 chr15 26333474 26333752 -59362002 + AluSq SINE Alu 1 279 -34 308 210 161 0 chr15 26333992 26334073 -59361681 - MIR SINE MIR -80 182 89 1548 135 93 3 chr15 26335901 26336190 -59359564 - MER46B DNA MER2_type 0 236 47 5424 123 43 8 chr15 26336191 26337147 -59358607 + L1MA5 LINE L1 5312 6300 0 247 103 0 0 chr15 26337171 26337210 -59358544 + Tigger4(Zombi) DNA MER2_type 25 63 -2668 22 35 0 0 chr15 26337740 26337769 -59357985 + AT_rich Low_complexity Low_complexity 1 29 0 4629 159 28 14 chr15 26338123 26339095 -59356659 + L1MB8 LINE L1 5188 6173 -5 209 114 29 0 chr15 26339180 26339215 -59356539 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 351 240 33 120 chr15 26339260 26339443 -59356311 + L2 LINE L2 3060 3226 -46 369 204 272 31 chr15 26339984 26340146 -59355608 + L2 LINE L2 3113 3313 0 1077 96 120 0 chr15 26340552 26340719 -59355035 + MSTA LTR MaLR 242 428 0 755 175 7 7 chr15 26341218 26341355 -59354399 - FLAM_C SINE Alu -6 137 1 297 264 132 11 chr15 26341364 26341455 -59354299 - MIR SINE MIR -67 141 40 601 239 72 19 chr15 26342444 26342792 -59352962 + MLT1I LTR MaLR 1 409 0 882 267 8 8 chr15 26342814 26343072 -59352682 + MIR SINE MIR 3 260 -2 314 330 48 0 chr15 26343505 26343608 -59352146 + L2 LINE L2 3158 3265 -7 307 288 162 18 chr15 26345003 26345114 -59350640 - MIR3 SINE MIR -22 186 60 * 323 360 150 21 chr15 26345057 26345577 -59350177 - L2 LINE L2 -1158 2156 1570 1395 171 8 8 chr15 26345735 26345975 -59349779 - L1PB4 LINE L1 -17 6139 5900 4123 162 14 4 chr15 26347063 26347822 -59347932 - L1MA9 LINE L1 -146 6166 5400 2811 166 28 0 chr15 26348501 26349032 -59346722 + L1MB7 LINE L1 5631 6176 -8 219 200 27 13 chr15 26349589 26349664 -59346090 + CT-rich Low_complexity Low_complexity 3 78 0 29371 95 12 31 chr15 26350984 26353910 -59341844 - L1P3 LINE L1 -664 5805 2965 2208 117 0 0 chr15 26353910 26354201 -59341553 + AluSx SINE Alu 1 291 -21 29371 95 12 31 chr15 26354201 26356409 -59339345 - L1P3 LINE L1 -3504 2965 718 207 374 33 0 chr15 26356638 26356729 -59339025 + MIR3 SINE MIR 111 204 -4 471 240 47 16 chr15 26358932 26359061 -59336693 + MIR SINE MIR 104 236 -26 23 33 0 0 chr15 26359534 26359564 -59336190 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr15 26359723 26359761 -59335993 + AT_rich Low_complexity Low_complexity 1 38 0 192 158 0 0 chr15 26363234 26363272 -59332482 + CT-rich Low_complexity Low_complexity 1 38 0 378 0 0 0 chr15 26363787 26363829 -59331925 + (TG)n Simple_repeat Simple_repeat 2 43 0 708 238 26 7 chr15 26363829 26363980 -59331774 - AluJb SINE Alu -28 284 131 213 158 0 0 chr15 26364506 26364544 -59331210 + L2 LINE L2 1351 1388 -1926 247 290 121 54 chr15 26364781 26365076 -59330678 + L2 LINE L2 2748 3063 -209 23 33 0 0 chr15 26365268 26365298 -59330456 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr15 26366260 26366289 -59329465 + AT_rich Low_complexity Low_complexity 1 29 0 734 64 37 18 chr15 26366295 26366404 -59329350 - HY1 scRNA scRNA -1 111 1 2100 99 35 0 chr15 26367978 26368260 -59327494 + AluSp SINE Alu 1 292 -21 483 181 0 0 chr15 26369105 26369188 -59326566 - AluJ/FLAM SINE Alu -219 93 11 280 305 107 30 chr15 26369245 26369376 -59326378 - L2 LINE L2 -6 3266 3126 722 202 0 23 chr15 26371019 26371148 -59324606 + FLAM_A SINE Alu 1 126 -7 1976 102 8 8 chr15 26371276 26371541 -59324213 + AluSx SINE Alu 1 265 -47 270 0 0 0 chr15 26371551 26371581 -59324173 + (CA)n Simple_repeat Simple_repeat 2 31 0 1873 178 0 9 chr15 26371923 26372238 -59323516 - AluJb SINE Alu 0 312 1 317 268 14 94 chr15 26372258 26372396 -59323358 + L2 LINE L2 3146 3272 0 200 321 186 47 chr15 26373411 26373604 -59322150 + L3 LINE CR1 958 1177 -400 268 341 85 18 chr15 26373646 26373810 -59321944 - MIR SINE MIR -59 203 29 2218 82 4 4 chr15 26374714 26375021 -59320733 - AluSc SINE Alu 0 307 1 257 347 153 40 chr15 26375199 26376057 -59319697 + L2 LINE L2 1521 2475 -839 220 241 25 0 chr15 26376116 26376195 -59319559 + (TA)n Simple_repeat Simple_repeat 1 81 0 276 146 19 39 chr15 26376254 26376357 -59319397 + (TA)n Simple_repeat Simple_repeat 2 102 0 903 226 115 0 chr15 26376432 26376666 -59319088 - MIR SINE MIR 0 262 2 1181 295 111 6 chr15 26377305 26377840 -59317914 - L2 LINE L2 -283 3030 2436 306 180 0 0 chr15 26377851 26377912 -59317842 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr15 26377912 26377933 -59317821 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr15 26378145 26378173 -59317581 + AT_rich Low_complexity Low_complexity 1 28 0 398 326 65 40 chr15 26378502 26378824 -59316930 + L1MC4 LINE L1 7491 7820 -222 2206 93 0 39 chr15 26379696 26380007 -59315747 - AluSq SINE Alu -13 300 2 22 35 0 0 chr15 26380994 26381023 -59314731 + AT_rich Low_complexity Low_complexity 1 29 0 299 183 83 0 chr15 26381037 26381097 -59314657 - L1ME3A LINE L1 -20 6150 6086 1811 159 114 30 chr15 26381194 26381622 -59314132 + L1MD1 LINE L1 5689 6152 -90 1861 133 14 24 chr15 26381637 26381931 -59313823 - AluJo SINE Alu -21 291 1 1735 174 3 3 chr15 26381942 26382229 -59313525 - AluJo SINE Alu -25 287 1 1825 197 22 30 chr15 26382387 26382753 -59313001 + MLT1A1 LTR MaLR 1 363 -2 23 0 0 0 chr15 26383404 26383427 -59312327 + AT_rich Low_complexity Low_complexity 1 23 0 532 79 0 0 chr15 26383556 26383619 -59312135 - AluJ/FRAM SINE Alu -29 283 221 2309 81 7 7 chr15 26383721 26384019 -59311735 - AluSq SINE Alu -15 298 1 21 0 0 0 chr15 26384409 26384430 -59311324 + AT_rich Low_complexity Low_complexity 1 21 0 1829 147 27 10 chr15 26384972 26385264 -59310490 - AluJb SINE Alu -15 297 1 605 302 72 41 chr15 26385618 26386078 -59309676 - L1ME LINE L1 -370 5800 5327 237 277 109 7 chr15 26386603 26386740 -59309014 - L1ME LINE L1 -844 5302 5152 2088 142 6 3 chr15 26387148 26387459 -59308295 - AluSx SINE Alu 0 312 1 778 251 140 17 chr15 26389778 26389896 -59305858 + AluSg1 SINE Alu 2 104 -205 210 37 0 0 chr15 26389896 26389923 -59305831 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 778 251 140 17 chr15 26389923 26390039 -59305715 + AluSg1 SINE Alu 104 265 -44 225 0 0 0 chr15 26390049 26390074 -59305680 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1217 441 10 0 chr15 26390639 26390938 -59304816 - AluJo SINE Alu 0 302 1 1962 153 0 0 chr15 26392234 26392528 -59303226 + AluJb SINE Alu 1 294 -18 180 242 85 105 chr15 26392540 26392693 -59303061 + L2 LINE L2 2306 2455 -859 2528 67 0 0 chr15 26392700 26392998 -59302756 + AluY SINE Alu 1 298 -13 349 202 60 6 chr15 26393397 26393565 -59302189 + (TA)n Simple_repeat Simple_repeat 1 177 0 336 156 104 7 chr15 26393579 26393733 -59302021 + (TATAA)n Simple_repeat Simple_repeat 4 172 0 251 92 81 0 chr15 26393741 26393828 -59301926 + (TTATA)n Simple_repeat Simple_repeat 2 95 0 53 40 0 0 chr15 26393828 26393902 -59301852 + AT_rich Low_complexity Low_complexity 1 74 0 266 290 14 0 chr15 26393913 26393982 -59301772 + L2 LINE L2 2992 3061 -211 199 299 80 43 chr15 26394218 26394405 -59301349 - L2 LINE L2 -742 2572 2379 187 325 33 20 chr15 26394498 26394649 -59301105 + L2 LINE L2 1932 2084 -1230 388 348 111 29 chr15 26394990 26395446 -59300308 + L2 LINE L2 2632 3117 -155 293 333 0 10 chr15 26395552 26395648 -59300106 + MIR SINE MIR 16 110 -98 7057 64 32 0 chr15 26396050 26397036 -59298718 + L1PA13 LINE L1 5149 6161 -2 1182 191 9 14 chr15 26397700 26397920 -59297834 - MER20 DNA MER1_type 0 219 1 538 282 55 17 chr15 26397936 26398117 -59297637 - MER5A DNA MER1_type 0 189 2 192 294 0 0 chr15 26398425 26398476 -59297278 - L2 LINE L2 -23 3249 3199 2152 145 0 0 chr15 26400346 26400686 -59295068 - AluSx SINE Alu 0 340 1 536 207 33 8 chr15 26400690 26400811 -59294943 - MIR SINE MIR -63 145 22 2190 193 28 28 chr15 26401083 26401549 -59294205 + MLT1C LTR MaLR 1 466 -1 284 273 113 27 chr15 26401742 26401892 -59293862 + MIR SINE MIR 20 182 -80 208 295 128 13 chr15 26402017 26402095 -59293659 - MIR3 SINE MIR 0 208 122 540 233 29 122 chr15 26402641 26402886 -59292868 + L2 LINE L2 3092 3313 0 305 271 193 14 chr15 26403277 26403417 -59292337 + MIR3 SINE MIR 41 205 -3 218 287 78 26 chr15 26404092 26404207 -59291547 + L2 LINE L2 2239 2359 -955 342 330 90 34 chr15 26407833 26408066 -59287688 - MIR SINE MIR -15 247 2 379 244 0 0 chr15 26408458 26408540 -59287214 + MIR SINE MIR 76 157 -105 * 400 256 276 10 chr15 26408530 26408733 -59287021 - MIR SINE MIR 0 262 6 802 286 9 22 chr15 26409969 26410193 -59285561 - MLT1J LTR MaLR -173 338 118 369 0 0 0 chr15 26410417 26410458 -59285296 + (CA)n Simple_repeat Simple_repeat 2 42 0 448 278 31 102 chr15 26410848 26411125 -59284629 + MLT1L LTR MaLR 89 424 -191 1825 249 137 25 chr15 26411413 26411976 -59283778 + MLT1E2 LTR MaLR 1 626 0 521 240 41 0 chr15 26411976 26412097 -59283657 + MLT1E2-int LTR MaLR 1 126 -1245 3955 172 32 35 chr15 26412100 26413599 -59282155 + L1PB4 LINE L1 4537 6035 -121 687 83 52 0 chr15 26413739 26413835 -59281919 + L1PA16 LINE L1 6061 6161 -5 858 100 62 0 chr15 26415491 26415621 -59280133 + L1PA16 LINE L1 6024 6161 -5 449 141 0 14 chr15 26415624 26415695 -59280059 - LTR37B LTR ERV1 -369 99 30 268 236 167 28 chr15 26417246 26417390 -59278364 - L1MC4a LINE L1 -1875 5933 5770 229 303 45 0 chr15 26417478 26417567 -59278187 + L1MC4 LINE L1 7941 8033 -9 216 0 0 0 chr15 26418918 26419191 -59276563 + (TTTTG)n Simple_repeat Simple_repeat 1 273 0 3156 84 2 43 chr15 26418962 26419167 -59276587 - L1PA15 LINE L1 -3 6162 5950 216 0 0 0 chr15 26419167 26419191 -59276563 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2341 50 0 3 chr15 26419193 26419475 -59276279 - AluY SINE Alu -30 281 1 3156 84 2 43 chr15 26419475 26419731 -59276023 - L1PA15 LINE L1 -216 5949 5717 280 188 0 31 chr15 26419676 26419740 -59276014 - L1MC4a LINE L1 -2039 5769 5708 * 441 283 168 16 chr15 26419735 26419926 -59275828 + MIR SINE MIR 25 244 -18 1889 182 36 36 chr15 26420545 26420935 -59274819 - MLT1B LTR MaLR 0 390 1 443 200 0 56 chr15 26421153 26421278 -59274476 + MIR SINE MIR 55 172 -90 356 267 137 0 chr15 26422105 26422251 -59273503 + MIR SINE MIR 68 233 -29 617 219 126 7 chr15 26422347 26422498 -59273256 - MIR SINE MIR -6 256 88 45 34 0 0 chr15 26422584 26422643 -59273111 + AT_rich Low_complexity Low_complexity 1 59 0 262 259 17 0 chr15 26422696 26422754 -59273000 + L2 LINE L2 3195 3253 -19 * 317 266 286 16 chr15 26422751 26422943 -59272811 - MIR SINE MIR -3 259 16 236 301 110 59 chr15 26423322 26423458 -59272296 + MIR SINE MIR 29 171 -91 591 277 12 24 chr15 26424128 26424294 -59271460 + MIR3 SINE MIR 17 180 -28 519 45 0 0 chr15 26424558 26424624 -59271130 + (TG)n Simple_repeat Simple_repeat 1 66 0 1055 204 28 32 chr15 26425801 26426017 -59269737 - MER20 DNA MER1_type 0 219 5 618 155 138 0 chr15 26427763 26427879 -59267875 - MER58B DNA MER1_type -28 313 182 22 0 0 0 chr15 26428287 26428309 -59267445 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr15 26429121 26429151 -59266603 + (A)n Simple_repeat Simple_repeat 1 30 0 444 277 127 18 chr15 26430332 26430552 -59265202 + L1ME3A LINE L1 5924 6167 -3 1807 142 23 40 chr15 26431362 26431664 -59264090 - AluJb SINE Alu -2 310 14 26 30 0 0 chr15 26431809 26431842 -59263912 + AT_rich Low_complexity Low_complexity 1 33 0 2700 32 0 10 chr15 26432372 26432685 -59263069 - AluY SINE Alu -1 310 1 27 29 0 0 chr15 26432765 26432799 -59262955 + AT_rich Low_complexity Low_complexity 1 34 0 364 248 108 108 chr15 26433998 26434164 -59261590 - L1M4 LINE L1 -3000 3146 2981 207 0 0 0 chr15 26434164 26434187 -59261567 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1814 181 0 13 chr15 26434188 26434491 -59261263 - 7SLRNA srpRNA srpRNA -21 299 1 364 248 108 108 chr15 26434491 26434596 -59261158 - L1M4 LINE L1 -3165 2981 2870 2181 108 14 0 chr15 26434596 26434893 -59260861 + AluSx SINE Alu 1 301 -11 364 248 108 108 chr15 26434893 26434932 -59260822 - L1M4 LINE L1 -3275 2871 2833 22 70 0 0 chr15 26434932 26434975 -59260779 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr15 26435733 26435761 -59259993 + AT_rich Low_complexity Low_complexity 1 28 0 232 146 21 42 chr15 26439104 26439152 -59256602 - MER2 DNA MER2_type -31 314 268 1334 146 5 14 chr15 26439179 26439391 -59256363 - MER2 DNA MER2_type -135 210 1 1144 177 41 70 chr15 26439629 26439872 -59255882 + MER46A DNA MER2_type 1 236 0 32 43 0 0 chr15 26439975 26440021 -59255733 + AT_rich Low_complexity Low_complexity 1 46 0 180 211 231 0 chr15 26440114 26440166 -59255588 + L2 LINE L2 3205 3268 -4 249 340 141 46 chr15 26440683 26441009 -59254745 - L2 LINE L2 -1 3271 2915 482 328 30 30 chr15 26441090 26441322 -59254432 - L2 LINE L2 -1722 1592 1361 296 250 91 0 chr15 26441322 26441410 -59254344 + L1ME2 LINE L1 6059 6154 -10 330 322 0 11 chr15 26441544 26441634 -59254120 + L2 LINE L2 3223 3311 -2 2226 135 41 36 chr15 26442582 26442944 -59252810 - THE1B LTR MaLR 0 364 1 6962 79 5 0 chr15 26442944 26443821 -59251933 - THE1B-int LTR MaLR 0 1580 700 333 297 79 35 chr15 26443896 26444125 -59251629 - L2 LINE L2 -353 2961 2723 1986 163 138 3 chr15 26444260 26444615 -59251139 - MER57A LTR ERV1 0 403 1 728 118 18 0 chr15 26444688 26444798 -59250956 - LTR54B LTR ERV1 -377 121 10 4994 198 38 30 chr15 26444802 26445600 -59250154 - MER57-int LTR ERV1 -389 7148 6358 1703 165 0 63 chr15 26445600 26445916 -59249838 + AluJb SINE Alu 1 296 -16 4994 198 38 30 chr15 26445916 26445956 -59249798 - MER57-int LTR ERV1 -1179 6358 6320 2224 163 0 34 chr15 26445956 26446305 -59249449 + MER1B DNA MER1_type 1 337 0 4994 198 38 30 chr15 26446305 26446563 -59249191 - MER57-int LTR ERV1 -1217 6320 6042 3627 114 4 20 chr15 26446563 26446785 -59248969 - MER1A DNA MER1_type -2174 528 304 1971 144 85 28 chr15 26446785 26447104 -59248650 + MER1B DNA MER1_type 1 337 0 3627 114 4 20 chr15 26447104 26447390 -59248364 - MER1A DNA MER1_type -2398 304 28 936 251 18 0 chr15 26447402 26447625 -59248129 - MER57-int LTR ERV1 -1486 6051 5825 4940 186 36 15 chr15 26447845 26448157 -59247597 - MER57-int LTR ERV1 -1716 5821 5517 342 0 0 0 chr15 26448157 26448195 -59247559 + (CA)n Simple_repeat Simple_repeat 1 38 0 4940 186 36 15 chr15 26448195 26448954 -59246800 - MER57-int LTR ERV1 -2020 5517 2183 389 287 22 44 chr15 26450111 26450247 -59245507 + MIR SINE MIR 20 152 -56 245 279 44 15 chr15 26450313 26450381 -59245373 + MER5B DNA MER1_type 35 104 -74 1143 257 70 54 chr15 26450397 26450777 -59244977 + L2 LINE L2 2683 3066 -247 1362 93 5 39 chr15 26450777 26450981 -59244773 + L1PB3 LINE L1 5957 6153 -1 1143 257 70 54 chr15 26450981 26451221 -59244533 + L2 LINE L2 3066 3301 -12 1590 159 10 57 chr15 26451930 26452244 -59243510 - AluJo SINE Alu -13 299 1 870 125 0 0 chr15 26452402 26452522 -59243232 + AluSq/x SINE Alu 1 120 -192 24 0 0 0 chr15 26452522 26452546 -59243208 + AT_rich Low_complexity Low_complexity 1 24 0 266 272 19 160 chr15 26453988 26454201 -59241553 - MIR SINE MIR -32 230 48 3069 155 51 26 chr15 26454419 26454988 -59240766 - LTR1 LTR ERV1 0 785 203 339 206 0 0 chr15 26454982 26455050 -59240704 - LTR1 LTR ERV1 -533 252 185 * 798 180 17 11 chr15 26455224 26455402 -59240352 - LTR1 LTR ERV1 -606 179 1 257 333 10 0 chr15 26455924 26456020 -59239734 + CT-rich Low_complexity Low_complexity 6 102 0 1231 256 56 117 chr15 26456627 26457579 -59238175 - L2 LINE L2 -161 3152 2257 1669 188 0 13 chr15 26457791 26458094 -59237660 + AluJb SINE Alu 4 302 -10 538 234 16 0 chr15 26459119 26459247 -59236507 + MIR SINE MIR 133 262 0 241 122 0 0 chr15 26459438 26459479 -59236275 - L1MB5 LINE L1 0 6174 6134 1104 89 0 0 chr15 26459479 26459614 -59236140 - AluJb SINE Alu -21 291 157 1674 169 0 0 chr15 26459635 26459914 -59235840 - L1MB5 LINE L1 -30 6144 5866 279 250 0 0 chr15 26460152 26460208 -59235546 - MIR3 SINE MIR -35 173 118 214 382 11 0 chr15 26460310 26460399 -59235355 - L2 LINE L2 -83 3189 3100 32356 116 13 16 chr15 26460404 26465328 -59230426 + L1P LINE L1 11 4919 -1227 425 92 81 3 chr15 26465334 26465416 -59230338 + L1PA7 LINE L1 4143 4228 -1918 7326 65 3 2 chr15 26465425 26465541 -59230213 + L1PA7 LINE L1 4928 5042 -1112 2447 74 3 13 chr15 26465541 26465851 -59229903 + AluY SINE Alu 1 307 -4 7326 65 3 2 chr15 26465851 26466944 -59228810 + L1PA7 LINE L1 5042 6145 -9 218 151 19 75 chr15 26466951 26467057 -59228697 + (TATAA)n Simple_repeat Simple_repeat 3 102 0 1804 189 30 27 chr15 26467147 26467512 -59228242 + MER47A DNA MER2_type 1 366 0 641 210 204 0 chr15 26468668 26468825 -59226929 + MER5A DNA MER1_type 1 189 0 1361 146 142 13 chr15 26468944 26469183 -59226571 - AluSg1 SINE Alu -17 292 23 438 303 0 0 chr15 26469430 26469539 -59226215 + L2 LINE L2 3205 3313 0 416 131 30 50 chr15 26469882 26469981 -59225773 + L1MC5 LINE L1 7756 7852 -109 468 308 55 37 chr15 26470203 26470528 -59225226 + L2 LINE L2 1560 1890 -1424 253 293 54 61 chr15 26470566 26470713 -59225041 + L2 LINE L2 2246 2391 -923 289 143 0 48 chr15 26470766 26470829 -59224925 - L1MA10 LINE L1 0 6334 6275 * 1874 184 18 26 chr15 26470825 26470875 -59224879 - L1ME1 LINE L1 -197 5969 5920 731 306 28 45 chr15 26470875 26471273 -59224481 - L1MA4A LINE L1 -376 5927 5537 612 279 133 29 chr15 26471471 26471787 -59223967 + MER115 DNA AcHobo 58 406 -287 1230 163 0 26 chr15 26471993 26472226 -59223528 - AluJo SINE Alu -14 298 72 303 93 0 0 chr15 26472257 26472300 -59223454 + (TCCC)n Simple_repeat Simple_repeat 3 45 0 185 304 24 65 chr15 26472300 26472324 -59223430 + L2 LINE L2 2458 2481 -833 1370 45 0 11 chr15 26472324 26472503 -59223251 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 185 304 24 65 chr15 26472503 26472646 -59223108 + L2 LINE L2 2481 2618 -696 244 278 351 0 chr15 26472668 26472819 -59222935 + MIR SINE MIR 23 226 -36 5059 130 51 17 chr15 26472900 26473783 -59221971 + Tigger3b DNA MER2_type 319 1231 0 217 348 45 80 chr15 26474322 26474635 -59221119 - L2 LINE L2 -411 2903 2602 381 202 0 24 chr15 26474858 26474942 -59220812 - MIR SINE MIR -1 261 180 842 241 47 30 chr15 26474942 26475178 -59220576 - MLT1G1 LTR MaLR 0 595 356 294 395 57 6 chr15 26475204 26475361 -59220393 + L2 LINE L2 3107 3271 -1 476 326 170 35 chr15 26475397 26475774 -59219980 - L3 LINE CR1 -75 1502 1075 283 281 132 53 chr15 26477193 26477307 -59218447 - L2 LINE L2 0 3272 3150 481 183 43 0 chr15 26477535 26477628 -59218126 + HY1 scRNA scRNA 12 108 -4 188 389 0 0 chr15 26477843 26477897 -59217857 - MIR SINE MIR -68 140 87 209 197 45 0 chr15 26478788 26478854 -59216900 + (TA)n Simple_repeat Simple_repeat 2 70 0 2133 127 7 0 chr15 26479589 26479889 -59215865 - AluSx SINE Alu -5 307 6 2028 107 0 82 chr15 26480445 26480773 -59214981 - AluSx SINE Alu -11 301 1 1693 141 0 44 chr15 26481955 26482253 -59213501 + AluJb SINE Alu 11 295 -17 2254 95 7 3 chr15 26482514 26482809 -59212945 + AluSq SINE Alu 1 296 -17 2069 142 0 0 chr15 26482866 26483169 -59212585 - AluSx SINE Alu -9 303 1 204 339 31 0 chr15 26483278 26483343 -59212411 - L2 LINE L2 -1 3312 3246 432 277 99 28 chr15 26483453 26483666 -59212088 - L3 LINE CR1 -154 1423 1196 257 264 0 0 chr15 26483808 26483861 -59211893 + MIR3 SINE MIR 131 183 -25 374 268 94 5 chr15 26484862 26484981 -59210773 + MIR SINE MIR 20 144 -64 2076 102 67 0 chr15 26485809 26486094 -59209660 - AluSx SINE Alu -8 304 1 710 129 0 16 chr15 26486390 26486514 -59209240 - L1MB8 LINE L1 -6 6172 6051 420 296 70 0 chr15 26487315 26487487 -59208267 + L1ME4a LINE L1 5743 5926 -195 1325 191 53 39 chr15 26487654 26487936 -59207818 + AluJo SINE Alu 1 286 -26 2293 198 41 41 chr15 26487936 26487972 -59207782 - L1MB8 LINE L1 -43 6135 6100 2117 130 0 13 chr15 26487972 26488273 -59207481 - AluSx SINE Alu -15 297 1 2293 198 41 41 chr15 26488273 26488821 -59206933 - L1MB8 LINE L1 -77 6101 5551 363 338 28 0 chr15 26489243 26489385 -59206369 - L2 LINE L2 -4 3309 3164 1572 260 68 9 chr15 26489490 26490181 -59205573 - L2 LINE L2 -4 3309 2579 1543 205 30 67 chr15 26490338 26490743 -59205011 - MLT1B LTR MaLR 0 390 1 184 316 143 10 chr15 26490787 26490885 -59204869 - L2 LINE L2 -626 2688 2578 669 272 71 36 chr15 26491732 26491956 -59203798 + MIR SINE MIR 7 238 -24 2223 97 23 0 chr15 26492602 26492902 -59202852 - AluSp SINE Alu -6 307 1 2488 77 3 0 chr15 26493179 26493489 -59202265 + AluSp SINE Alu 3 313 0 1830 172 0 41 chr15 26494632 26494951 -59200803 + AluJb SINE Alu 3 308 -4 2248 101 6 28 chr15 26495405 26495723 -59200031 + AluSp SINE Alu 1 311 -2 2438 206 34 16 chr15 26495962 26496466 -59199288 - MER82 DNA MER2_type -9 644 132 1843 178 57 44 chr15 26496519 26496973 -59198781 - MLT1C LTR MaLR -2 465 6 1315 288 32 19 chr15 26497016 26497653 -59198101 + L1ME1 LINE L1 946 1630 -4680 445 289 90 38 chr15 26497705 26498079 -59197675 + L1ME1 LINE L1 3048 3491 -2638 486 115 74 7 chr15 26498329 26498477 -59197277 + (TA)n Simple_repeat Simple_repeat 1 158 0 432 299 81 4 chr15 26498519 26498780 -59196974 + L1ME1 LINE L1 3574 3854 -2275 1902 98 0 0 chr15 26499029 26499275 -59196479 + AluY SINE Alu 39 284 -27 530 281 151 41 chr15 26499529 26500682 -59195072 + L1ME1 LINE L1 4549 5835 -314 15202 161 50 47 chr15 26500716 26504891 -59190863 + L1MA4A LINE L1 2 4164 -2841 413 187 0 0 chr15 26504891 26504966 -59190788 - AluJ/FRAM SINE Alu -7 305 231 15202 161 50 47 chr15 26504966 26505137 -59190617 + L1MA4A LINE L1 4164 4333 -2672 2210 126 7 0 chr15 26505137 26505446 -59190308 - AluSx SINE Alu -1 311 1 15202 161 50 47 chr15 26505446 26506218 -59189536 + L1MA4A LINE L1 4333 5101 -1904 279 0 0 0 chr15 26506218 26506249 -59189505 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 15202 161 50 47 chr15 26506249 26508043 -59187711 + L1MA4A LINE L1 5101 6998 -7 2263 83 7 0 chr15 26508065 26508353 -59187401 + AluSx SINE Alu 1 290 -22 199 284 226 0 chr15 26508507 26508609 -59187145 - MIR3 SINE MIR -78 130 6 2241 106 7 0 chr15 26508657 26508950 -59186804 + AluSx SINE Alu 5 299 -13 547 113 0 0 chr15 26509130 26509210 -59186544 + MADE1 DNA Mariner 1 80 0 562 156 0 10 chr15 26509384 26509480 -59186274 + FRAM SINE Alu 62 156 -20 425 28 56 0 chr15 26509498 26509569 -59186185 + (TA)n Simple_repeat Simple_repeat 2 76 0 225 209 0 0 chr15 26510032 26510099 -59185655 + (TA)n Simple_repeat Simple_repeat 1 67 0 1411 143 5 0 chr15 26510103 26510326 -59185428 + AluSq SINE Alu 87 310 -3 414 263 172 5 chr15 26510400 26510586 -59185168 + L2 LINE L2 1857 2073 -1241 521 277 211 28 chr15 26510597 26510990 -59184764 + L2 LINE L2 2386 2850 -464 221 246 116 0 chr15 26511024 26511093 -59184661 + L2 LINE L2 2938 3014 -299 300 301 83 23 chr15 26511136 26511269 -59184485 + L2 LINE L2 3172 3312 -1 1640 155 32 7 chr15 26511437 26511714 -59184040 - AluJb SINE Alu -28 284 1 2270 96 10 6 chr15 26514065 26514377 -59181377 + AluSq SINE Alu 1 313 0 21 0 0 0 chr15 26514779 26514800 -59180954 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr15 26516300 26516328 -59179426 + AT_rich Low_complexity Low_complexity 1 28 0 1012 254 134 40 chr15 26516553 26517029 -59178725 - MARNA DNA Mariner -21 565 45 924 170 7 0 chr15 26518621 26518768 -59176986 + FAM SINE Alu 26 173 -12 26 30 0 0 chr15 26518796 26518829 -59176925 + AT_rich Low_complexity Low_complexity 1 33 0 198 0 0 0 chr15 26522019 26522041 -59173713 + (A)n Simple_repeat Simple_repeat 1 22 0 2475 63 0 0 chr15 26522436 26522735 -59173019 - AluY SINE Alu -12 299 1 488 169 180 0 chr15 26524197 26524285 -59171469 - MER44D DNA MER2_type -1 604 501 578 192 66 8 chr15 26524285 26524451 -59171303 - MER6 DNA MER2_type -1 864 -64 * 1108 121 103 56 chr15 26524451 26524678 -59171076 - MER44D DNA MER2_type -101 508 1 378 352 76 25 chr15 26524763 26524999 -59170755 - L2 LINE L2 0 3272 3025 799 214 29 0 chr15 26525810 26525983 -59169771 - MER3 DNA MER1_type -78 131 1 1865 141 7 14 chr15 26526154 26526451 -59169303 + AluJb SINE Alu 1 295 -17 21 57 0 0 chr15 26526452 26526487 -59169267 + AT_rich Low_complexity Low_complexity 1 35 0 725 99 0 0 chr15 26527210 26527311 -59168443 - HY3 scRNA scRNA 0 101 1 193 253 195 0 chr15 26527383 26527470 -59168284 - L2 LINE L2 -2 3311 3208 185 250 0 78 chr15 26528509 26528573 -59167181 - L2 LINE L2 -3 3269 3211 2257 82 7 30 chr15 26529438 26529742 -59166012 - AluSp SINE Alu -16 297 1 1902 123 20 27 chr15 26530667 26530967 -59164787 + AluJb SINE Alu 1 298 -14 1765 255 111 10 chr15 26532256 26533060 -59162694 - L2 LINE L2 -5 3308 2427 2047 112 32 0 chr15 26533152 26533437 -59162317 + AluY SINE Alu 1 294 -17 314 313 155 27 chr15 26536056 26536522 -59159232 + L2 LINE L2 2508 3047 -225 207 0 0 0 chr15 26537173 26537196 -59158558 + (A)n Simple_repeat Simple_repeat 1 23 0 180 401 99 40 chr15 26537682 26537742 -59158012 - L2 LINE L2 -90 3182 3127 207 0 0 0 chr15 26537742 26537765 -59157989 + (TATAA)n Simple_repeat Simple_repeat 3 25 0 180 401 99 40 chr15 26537765 26538008 -59157746 - L2 LINE L2 -145 3127 2861 210 338 58 26 chr15 26538620 26538774 -59156980 + L2 LINE L2 2837 2995 -277 244 309 175 0 chr15 26538942 26539039 -59156715 + L2 LINE L2 3154 3267 -5 1503 84 194 4 chr15 26539461 26539743 -59156011 + AluSg SINE Alu 2 328 0 1821 154 26 0 chr15 26540052 26540364 -59155390 + L1PA14 LINE L1 5841 6160 -1 2201 111 7 0 chr15 26540565 26540863 -59154891 + AluSq SINE Alu 1 300 -13 21 0 0 0 chr15 26541252 26541273 -59154481 + AT_rich Low_complexity Low_complexity 1 21 0 2122 123 0 3 chr15 26541986 26542279 -59153475 + AluSx SINE Alu 1 292 -20 720 198 0 0 chr15 26542591 26542712 -59153042 + FLAM_A SINE Alu 1 121 -12 4875 109 88 20 chr15 26542733 26543621 -59152133 + L1MA4A LINE L1 5353 6300 -3 22 0 0 0 chr15 26544895 26544917 -59150837 + GC_rich Low_complexity Low_complexity 1 22 0 310 270 112 51 chr15 26547246 26547424 -59148330 + MIR SINE MIR 23 211 -51 1459 188 59 15 chr15 26548286 26548558 -59147196 - AluJo SINE Alu -26 286 3 269 258 70 62 chr15 26548586 26548714 -59147040 - L1ME LINE L1 -303 5818 5690 2054 93 18 18 chr15 26548745 26549053 -59146701 + AluSx SINE Alu 6 313 0 277 175 62 25 chr15 26549207 26549287 -59146467 - L1MC5 LINE L1 -34 7927 7845 * 369 296 38 0 chr15 26549277 26549409 -59146345 - L1MC4 LINE L1 -113 7929 7793 2077 141 0 3 chr15 26549438 26549737 -59146017 + AluSx SINE Alu 1 298 -14 221 283 19 0 chr15 26549868 26549921 -59145833 - MER5A DNA MER1_type -78 111 58 364 244 74 82 chr15 26549949 26550029 -59145725 - MER94 DNA DNA 0 134 54 2247 66 7 43 chr15 26550029 26550333 -59145421 + AluSc SINE Alu 1 293 -16 364 244 74 82 chr15 26550333 26550387 -59145367 - MER94 DNA DNA -80 54 1 186 299 60 15 chr15 26550751 26550818 -59144936 + L2 LINE L2 3202 3271 -1 2260 116 0 0 chr15 26551155 26551465 -59144289 - AluSx SINE Alu -2 310 1 2006 217 21 21 chr15 26551465 26551944 -59143810 - L1ME1 LINE L1 -45 6121 5643 1143 209 178 77 chr15 26551946 26552427 -59143327 + MLT1E LTR MaLR 1 643 -11 1941 194 19 13 chr15 26552441 26553071 -59142683 - L1ME1 LINE L1 -520 5646 4855 199 313 73 0 chr15 26553180 26553276 -59142478 + L2 LINE L2 3200 3302 -11 22 35 0 0 chr15 26553372 26553401 -59142353 + AT_rich Low_complexity Low_complexity 1 29 0 396 232 45 9 chr15 26553451 26553563 -59142191 - LTR33 LTR ERVL 0 521 406 472 211 0 0 chr15 26553663 26553753 -59142001 + MER34 LTR ERV1 1 90 -452 2322 106 3 0 chr15 26553945 26554257 -59141497 + AluSq SINE Alu 1 313 0 516 209 65 22 chr15 26554442 26554581 -59141173 + L2 LINE L2 3169 3313 0 204 219 27 55 chr15 26554604 26554677 -59141077 - L2 LINE L2 -104 3209 3139 333 182 250 0 chr15 26554745 26554833 -59140921 - MIR SINE MIR -77 185 76 296 286 171 0 chr15 26554859 26554964 -59140790 - L2 LINE L2 0 3272 3150 542 164 179 0 chr15 26555005 26555206 -59140548 + Charlie5 DNA MER1_type 2330 2566 -46 457 192 10 67 chr15 26555208 26555243 -59140511 - MER5A DNA MER1_type -83 106 71 2366 61 37 0 chr15 26555243 26555537 -59140217 - AluY SINE Alu -6 305 1 457 192 10 67 chr15 26555537 26555605 -59140149 - MER5A DNA MER1_type -118 71 9 2197 92 30 0 chr15 26555883 26556178 -59139576 + AluSq SINE Alu 1 304 -9 244 265 103 0 chr15 26556418 26556486 -59139268 - L2 LINE L2 -213 3059 2985 2243 96 3 7 chr15 26556802 26557105 -59138649 - AluSq SINE Alu -11 302 1 306 247 68 0 chr15 26557489 26557562 -59138192 + MIR SINE MIR 31 108 -100 2184 108 3 3 chr15 26557883 26558180 -59137574 + AluSq SINE Alu 1 297 -16 368 313 0 46 chr15 26558778 26558909 -59136845 + MIR3 SINE MIR 13 137 -71 183 42 0 0 chr15 26559344 26559368 -59136386 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 182 114 0 29 chr15 26560479 26560514 -59135240 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 2360 93 3 0 chr15 26560517 26560828 -59134926 - AluSp SINE Alu -1 312 1 2079 114 0 3 chr15 26561224 26561514 -59134240 - AluSx SINE Alu -18 294 6 1091 250 120 24 chr15 26561782 26562198 -59133556 - Charlie7 DNA MER1_type -2101 511 56 1933 182 35 56 chr15 26562331 26562842 -59132912 - L1MB8 LINE L1 0 6178 5675 1852 120 51 4 chr15 26563201 26563477 -59132277 - AluSx SINE Alu -19 293 5 399 264 54 87 chr15 26563486 26563763 -59131991 - L1MC/D LINE L1 -1985 5823 5556 2065 141 0 0 chr15 26563785 26564090 -59131664 - AluSg SINE Alu -5 305 1 3374 163 63 9 chr15 26564324 26564961 -59130793 - LTR51 LTR ERV1 0 671 1 282 258 45 22 chr15 26564964 26565053 -59130701 - L1MC/D LINE L1 -2082 4064 3974 1837 183 116 21 chr15 26565114 26565535 -59130219 + LTR2B LTR ERV1 30 490 0 2016 145 40 38 chr15 26565535 26565934 -59129820 + LTR23 LTR ERV1 37 436 -1 35 0 0 0 chr15 26565945 26565980 -59129774 + AT_rich Low_complexity Low_complexity 1 35 0 544 320 24 27 chr15 26566011 26566345 -59129409 - L1MC/D LINE L1 -2232 3914 3582 26 30 0 0 chr15 26566487 26566520 -59129234 + AT_rich Low_complexity Low_complexity 1 33 0 28 61 0 0 chr15 26566728 26566777 -59128977 + AT_rich Low_complexity Low_complexity 1 49 0 337 283 8 33 chr15 26567300 26567320 -59128434 + L1MC4 LINE L1 6593 6612 -1430 2235 100 3 41 chr15 26567320 26567639 -59128115 + AluSx SINE Alu 1 307 -5 337 283 8 33 chr15 26567639 26567738 -59128016 + L1MC4 LINE L1 6612 6709 -1333 448 181 0 19 chr15 26567738 26567843 -59127911 + (TA)n Simple_repeat Simple_repeat 2 104 0 23 54 0 0 chr15 26568490 26568527 -59127227 + AT_rich Low_complexity Low_complexity 1 37 0 325 241 12 12 chr15 26568686 26568769 -59126985 - MIR SINE MIR -69 193 111 250 228 108 18 chr15 26568863 26568990 -59126764 - MIR3 SINE MIR -74 134 9 243 125 0 0 chr15 26569081 26569121 -59126633 + (T)n Simple_repeat Simple_repeat 1 40 0 240 361 143 13 chr15 26569770 26570147 -59125607 + L2 LINE L2 2434 2859 -455 420 102 45 23 chr15 26570473 26570561 -59125193 + CT-rich Low_complexity Low_complexity 2 91 0 1711 160 38 17 chr15 26570569 26570856 -59124898 - AluJb SINE Alu -19 293 1 1348 80 0 43 chr15 26570953 26571141 -59124613 - AluSg/x SINE Alu -10 302 123 584 181 16 0 chr15 26571153 26571280 -59124474 - L1MC4 LINE L1 0 8042 7914 6779 129 15 4 chr15 26571299 26572548 -59123206 - L1MA3 LINE L1 0 7724 6462 4506 156 37 19 chr15 26572544 26573013 -59122741 - L1MA3 LINE L1 -2920 4645 4186 * 2465 80 3 0 chr15 26573013 26573315 -59122439 + AluSp SINE Alu 1 303 -10 4506 156 37 19 chr15 26573315 26574427 -59121327 - L1MA3 LINE L1 -3379 4186 3032 3867 152 31 16 chr15 26574438 26575177 -59120577 - L1PA16 LINE L1 -11 6155 5406 * 11541 180 40 23 chr15 26575165 26575986 -59119768 - L1MA3 LINE L1 -4518 3047 2242 2493 83 3 0 chr15 26575986 26576288 -59119466 - AluSc SINE Alu -6 303 1 11541 180 40 23 chr15 26576288 26578181 -59117573 - L1MA3 LINE L1 -5323 2242 9 1486 180 131 27 chr15 26578230 26578674 -59117080 - LTR54B LTR ERV1 -8 490 1 809 192 29 0 chr15 26578674 26578846 -59116908 - L1MC4 LINE L1 -181 7861 7685 2993 161 2 22 chr15 26578859 26579398 -59116356 - MER44D DNA MER2_type -21 584 2 376 219 212 7 chr15 26579409 26579546 -59116208 - L1MC4 LINE L1 -366 7676 7512 824 218 26 79 chr15 26579596 26579977 -59115777 + LTR37A LTR ERV1 18 378 -48 2457 145 33 46 chr15 26579991 26580024 -59115730 - LTR54 LTR ERV1 0 510 478 2840 133 9 0 chr15 26580024 26580454 -59115300 + MER57B LTR ERV1 1 434 0 2457 145 33 46 chr15 26580454 26580937 -59114817 - LTR54 LTR ERV1 -32 478 1 2917 208 75 19 chr15 26580954 26581730 -59114024 - L1MC4 LINE L1 -514 7528 6710 1437 211 83 82 chr15 26581728 26581924 -59113830 - L1MC4 LINE L1 -1917 5891 5697 * 357 24 0 0 chr15 26581924 26581966 -59113788 + (TA)n Simple_repeat Simple_repeat 1 42 0 1437 211 83 82 chr15 26581966 26582263 -59113491 - L1MC4 LINE L1 -2111 5697 5402 746 173 8 0 chr15 26582263 26582390 -59113364 - FLAM_C SINE Alu -5 128 1 1437 211 83 82 chr15 26582390 26582438 -59113316 - L1MC4 LINE L1 -2406 5402 5356 2333 103 7 0 chr15 26582438 26582738 -59113016 - AluSx SINE Alu -10 302 1 1437 211 83 82 chr15 26582738 26582830 -59112924 - L1MC4 LINE L1 -2452 5356 5255 384 285 26 16 chr15 26582956 26583149 -59112605 - L1MC4 LINE L1 -1038 5108 4914 2021 119 3 7 chr15 26583156 26583450 -59112304 - AluSc SINE Alu 0 309 17 627 120 10 0 chr15 26583486 26583586 -59112168 + AluSg SINE Alu 1 101 -209 1732 174 4 0 chr15 26583724 26583999 -59111755 - AluSp SINE Alu -37 276 1 445 294 56 16 chr15 26584023 26584157 -59111597 - L1MC4 LINE L1 -1499 4647 4520 2169 104 0 28 chr15 26584157 26584475 -59111279 - AluSg SINE Alu -1 309 1 445 294 56 16 chr15 26584475 26584717 -59111037 - L1MC4 LINE L1 -1626 4520 4256 1044 190 99 18 chr15 26584746 26585030 -59110724 - LTR52 LTR ERVL -107 314 8 268 305 115 24 chr15 26585210 26585715 -59110039 - L1MC4 LINE L1 -2951 3195 2645 1280 170 28 45 chr15 26585951 26586198 -59109556 + AluJo SINE Alu 40 282 -30 1711 151 91 0 chr15 26586504 26586835 -59108919 - MER46B DNA MER2_type 0 236 1 581 128 0 0 chr15 26587276 26587370 -59108384 - AluSp/q SINE Alu -9 304 211 274 331 59 7 chr15 26587451 26587587 -59108167 - MIR SINE MIR 0 262 120 416 133 0 13 chr15 26587916 26587991 -59107763 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 1622 211 13 0 chr15 26587996 26588308 -59107446 - 7SLRNA srpRNA srpRNA -4 316 1 418 311 81 12 chr15 26589294 26589455 -59106299 - MIR3 SINE MIR -15 193 22 1484 205 120 28 chr15 26589466 26589890 -59105864 + MLT1C LTR MaLR 1 463 -4 405 58 0 0 chr15 26590167 26590219 -59105535 + (TG)n Simple_repeat Simple_repeat 2 53 0 21 0 0 0 chr15 26590416 26590437 -59105317 + AT_rich Low_complexity Low_complexity 1 21 0 736 207 0 0 chr15 26590979 26591119 -59104635 - MSTD LTR MaLR -8 388 249 2328 97 0 3 chr15 26591119 26591418 -59104336 - AluSp SINE Alu -15 298 1 4625 147 23 50 chr15 26591420 26592146 -59103608 - L1MA5 LINE L1 -262 6038 5294 198 0 0 0 chr15 26592146 26592168 -59103586 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 2243 100 0 0 chr15 26592170 26592459 -59103295 - AluSx SINE Alu -18 294 6 4625 147 23 50 chr15 26592459 26592946 -59102808 - L1MA5 LINE L1 -1007 5293 4870 1962 126 48 10 chr15 26592946 26593239 -59102515 + AluSx SINE Alu 1 304 -8 4625 147 23 50 chr15 26593239 26593779 -59101975 - L1MA5 LINE L1 -1430 4870 4317 21 0 0 0 chr15 26593798 26593819 -59101935 + AT_rich Low_complexity Low_complexity 1 21 0 13709 181 3 24 chr15 26593825 26595363 -59100391 - L1PB1 LINE L1 -8 6143 4574 483 15 44 0 chr15 26595363 26595431 -59100323 - L1PA3 LINE L1 0 6155 6085 13709 181 3 24 chr15 26595431 26596891 -59098863 - L1PB1 LINE L1 -1577 4574 3252 2213 99 20 0 chr15 26596891 26597185 -59098569 - AluSq SINE Alu -13 300 1 13709 181 3 24 chr15 26597185 26598272 -59097482 - L1PB1 LINE L1 -2899 3252 2144 5301 183 55 6 chr15 26598271 26599517 -59096237 - L1MA5 LINE L1 -1813 4333 3028 * 1998 140 0 7 chr15 26599530 26599855 -59095899 - AluSq SINE Alu 0 323 1 1367 142 0 14 chr15 26599857 26600069 -59095685 - AluSg/x SINE Alu -11 301 93 408 20 0 0 chr15 26600072 26600121 -59095633 + (CA)n Simple_repeat Simple_repeat 1 49 0 2926 160 17 2 chr15 26600125 26600651 -59095103 - MSTA-int LTR MaLR -1117 534 1 2245 149 88 8 chr15 26600651 26601047 -59094707 - MSTA LTR MaLR 0 428 1 8142 200 58 55 chr15 26601047 26601197 -59094557 - L1 LINE L1 -2730 4835 4687 2079 124 0 22 chr15 26601197 26601512 -59094242 - AluSg SINE Alu -2 308 1 8142 200 58 55 chr15 26601512 26602455 -59093299 - L1 LINE L1 -2878 4687 3749 1332 108 0 25 chr15 26602455 26602659 -59093095 - L1PA8 LINE L1 -1 6171 5973 8142 200 58 55 chr15 26602659 26602952 -59092802 - L1 LINE L1 -3816 3749 3458 1621 145 10 17 chr15 26602952 26603241 -59092513 + AluY SINE Alu 1 287 -24 8142 200 58 55 chr15 26603241 26603546 -59092208 - L1 LINE L1 -4107 3458 3155 2198 91 3 33 chr15 26603546 26603853 -59091901 - AluY SINE Alu -13 298 1 8142 200 58 55 chr15 26603853 26606286 -59089468 - L1 LINE L1 -4410 3155 11 265 362 64 11 chr15 26606698 26606792 -59088962 - L2 LINE L2 -4 3268 3170 341 366 43 24 chr15 26606865 26607029 -59088725 + L2 LINE L2 3074 3240 -32 261 314 0 0 chr15 26607172 26607258 -59088496 - L1M4 LINE L1 -2280 3866 3781 296 273 139 51 chr15 26607640 26607856 -59087898 - LTR16C LTR ERVL -1 490 256 670 236 152 28 chr15 26607864 26608045 -59087709 - L1ME LINE L1 -365 5801 5644 1835 179 0 3 chr15 26608045 26608342 -59087412 - AluSx SINE Alu -16 296 1 670 236 152 28 chr15 26608342 26608353 -59087401 - L1ME LINE L1 -522 5644 5636 2468 122 5 19 chr15 26608353 26608722 -59087032 + THE1B LTR MaLR 1 364 0 670 236 152 28 chr15 26608722 26608742 -59087012 - L1ME LINE L1 -530 5636 5620 2002 143 0 7 chr15 26608742 26609035 -59086719 + AluSx SINE Alu 1 291 -21 670 236 152 28 chr15 26609035 26609257 -59086497 - L1ME LINE L1 -546 5620 5313 8972 181 27 9 chr15 26609372 26610484 -59085270 - L1MA4A LINE L1 -308 6697 5606 2313 107 0 13 chr15 26610484 26610801 -59084953 + AluSq SINE Alu 1 313 0 8972 181 27 9 chr15 26610801 26612468 -59083286 - L1MA4A LINE L1 -1399 5606 3868 4941 148 49 15 chr15 26612480 26613897 -59081857 - L1PA16 LINE L1 -9 6157 4692 801 294 4 7 chr15 26613930 26614199 -59081555 - L1PA12 LINE L1 -5132 2449 2182 1884 151 39 39 chr15 26614389 26614726 -59081028 + MER1B DNA MER1_type 1 337 0 287 323 0 0 chr15 26614783 26614879 -59080875 - L1PA12 LINE L1 -5400 2181 2086 1122 338 29 39 chr15 26615011 26615626 -59080128 - L1PA12 LINE L1 -6177 1397 789 10832 191 86 44 chr15 26615655 26617764 -59077990 - L1MA4A LINE L1 -2966 3882 1864 480 35 0 0 chr15 26617764 26617822 -59077932 + (TA)n Simple_repeat Simple_repeat 2 59 0 2140 138 0 3 chr15 26617822 26618127 -59077627 - AluSx SINE Alu -8 304 1 10832 191 86 44 chr15 26618127 26619717 -59076037 - L1MA4A LINE L1 -4983 1865 28 1843 152 139 16 chr15 26620202 26620583 -59075171 - MSTA LTR MaLR 0 428 1 8286 191 30 5 chr15 26620583 26622193 -59073561 - MSTA-int LTR MaLR 0 1651 1 2201 123 129 11 chr15 26622195 26622576 -59073178 - MSTA LTR MaLR -2 426 1 454 236 73 9 chr15 26623435 26623545 -59072209 - L1MC4 LINE L1 -607 7435 7319 2306 119 3 6 chr15 26623546 26623898 -59071856 - THE1B LTR MaLR -13 351 1 2265 105 0 0 chr15 26623903 26624197 -59071557 - AluSg SINE Alu -16 294 1 852 203 42 97 chr15 26624198 26624570 -59071184 - L1MC4 LINE L1 -715 7327 6954 239 242 265 23 chr15 26625416 26625548 -59070206 + MIR SINE MIR 28 191 -71 2375 87 0 0 chr15 26626597 26626907 -59068847 - AluSg SINE Alu 0 310 1 21 71 0 0 chr15 26626956 26626998 -59068756 + AT_rich Low_complexity Low_complexity 1 42 0 318 249 114 0 chr15 26627723 26627831 -59067923 + MIR SINE MIR 35 141 -67 1289 332 159 19 chr15 26629485 26630873 -59064881 - L2 LINE L2 -1 3271 1685 269 250 15 0 chr15 26631251 26631319 -59064435 - MIR3 SINE MIR -7 201 133 365 236 91 0 chr15 26631319 26631429 -59064325 - LTR33 LTR ERVL 0 521 402 1003 282 151 19 chr15 26634419 26634930 -59060824 - L2 LINE L2 -19 3294 2708 188 67 33 0 chr15 26635001 26635031 -59060723 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 265 262 121 54 chr15 26636894 26637043 -59058711 + MIR SINE MIR 41 199 -63 4843 42 5 3 chr15 26637187 26637777 -59057977 + LTR10C LTR ERV1 1 591 0 360 400 56 0 chr15 26637984 26638199 -59057555 - MIR SINE MIR -34 228 2 189 296 88 32 chr15 26638423 26638548 -59057206 - L2 LINE L2 -20 3293 3162 1021 212 69 69 chr15 26638574 26638966 -59056788 + L1M4 LINE L1 3587 3978 -2168 266 268 5 132 chr15 26638961 26639066 -59056688 + L1ME3 LINE L1 5962 6030 -132 * 1110 162 29 0 chr15 26639066 26639276 -59056478 - L1MB1 LINE L1 -1 6167 5952 266 268 5 132 chr15 26639276 26639375 -59056379 + L1ME3 LINE L1 6030 6140 -22 24 32 0 0 chr15 26639521 26639552 -59056202 + AT_rich Low_complexity Low_complexity 1 31 0 2171 110 3 3 chr15 26639552 26639844 -59055910 + AluSx SINE Alu 1 292 -20 186 43 0 0 chr15 26639848 26639871 -59055883 + (CA)n Simple_repeat Simple_repeat 2 24 0 246 300 0 33 chr15 26639878 26639998 -59055756 - L1MB1 LINE L1 -1920 5888 5773 590 299 57 4 chr15 26640083 26640433 -59055321 - L1ME4a LINE L1 -295 5826 5450 431 92 0 0 chr15 26641014 26641079 -59054675 - MER41B LTR ERV1 -90 545 481 207 0 0 0 chr15 26641409 26641432 -59054322 + (CAT)n Simple_repeat Simple_repeat 1 23 0 33 25 0 0 chr15 26642073 26642113 -59053641 + AT_rich Low_complexity Low_complexity 1 40 0 919 199 135 13 chr15 26642447 26642759 -59052995 - L1MC4 LINE L1 0 8042 7693 200 233 0 0 chr15 26642763 26642806 -59052948 + T-rich Low_complexity Low_complexity 1 43 0 688 246 36 25 chr15 26642914 26643191 -59052563 - L1MC4 LINE L1 -373 7669 7390 473 267 85 48 chr15 26643832 26644184 -59051570 + HAL1 LINE L1 1296 1660 -847 462 248 0 0 chr15 26644186 26644303 -59051451 + HAL1 LINE L1 1697 1813 -694 378 263 34 62 chr15 26644437 26644616 -59051138 + HAL1 LINE L1 1920 2093 -414 636 274 177 26 chr15 26644851 26645190 -59050564 - L2 LINE L2 -1 3312 2923 257 246 0 15 chr15 26645228 26645293 -59050461 - MIR SINE MIR -77 185 122 192 342 0 81 chr15 26645339 26645450 -59050304 - L2 LINE L2 -188 3084 2983 324 0 0 0 chr15 26645528 26645564 -59050190 + (TG)n Simple_repeat Simple_repeat 1 36 0 234 0 0 0 chr15 26645563 26645589 -59050165 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 1306 36 21 10 chr15 26645589 26645781 -59049973 - L1P1 LINE L1 -708 5447 5254 189 250 21 0 chr15 26646693 26646741 -59049013 - L2 LINE L2 0 3272 3224 264 290 145 8 chr15 26648080 26648183 -59047571 - MIR SINE MIR -63 145 32 37367 67 6 49 chr15 26648606 26650340 -59045414 - L1PA3 LINE L1 0 6155 4347 3185 34 0 3 chr15 26650340 26650724 -59045030 - L1PA3 LINE L1 -3 6152 5770 393 55 0 0 chr15 26650728 26650783 -59044971 - L1PA3 LINE L1 0 6155 6101 37367 67 6 49 chr15 26650783 26655484 -59040270 - L1PA3 LINE L1 -1811 4344 1 952 267 81 26 chr15 26655697 26656175 -59039579 - MLT1H LTR MaLR 0 549 12 2314 137 146 2 chr15 26656813 26657237 -59038517 - MER31A LTR ERV1 0 485 1 504 240 178 45 chr15 26657846 26658133 -59037621 - L2 LINE L2 -1 3312 2988 24 0 0 0 chr15 26659336 26659360 -59036394 + AT_rich Low_complexity Low_complexity 1 24 0 525 321 126 16 chr15 26659508 26659826 -59035928 - L3 LINE CR1 -123 1454 1102 819 225 115 5 chr15 26661275 26661484 -59034270 + MIR SINE MIR 3 234 -28 277 281 168 87 chr15 26661874 26662059 -59033695 + MIR SINE MIR 28 227 -35 184 239 30 45 chr15 26662162 26662229 -59033525 + MER5A DNA MER1_type 10 75 -114 * 520 223 182 7 chr15 26662173 26662321 -59033433 - MER5A DNA MER1_type -7 182 9 355 224 238 14 chr15 26663630 26663773 -59031981 - LTR33 LTR ERVL -5 516 342 247 302 23 0 chr15 26663802 26663888 -59031866 - LTR33 LTR ERVL -343 178 91 6206 120 73 12 chr15 26663888 26664997 -59030757 - Tigger3b DNA MER2_type 0 1231 55 313 238 36 0 chr15 26665025 26665109 -59030645 - LTR33 LTR ERVL -427 94 8 28 0 0 0 chr15 26666565 26666593 -59029161 + AT_rich Low_complexity Low_complexity 1 28 0 198 91 0 0 chr15 26666666 26666699 -59029055 + (T)n Simple_repeat Simple_repeat 1 33 0 985 135 60 22 chr15 26666720 26666905 -59028849 - AluY SINE Alu -1 310 119 2790 16 0 0 chr15 26666918 26667229 -59028525 - AluYa5 SINE Alu 0 311 1 476 219 18 9 chr15 26667281 26667395 -59028359 + AluY SINE Alu 3 117 -194 234 276 0 16 chr15 26667589 26667716 -59028038 + (TTA)n Simple_repeat Simple_repeat 1 125 0 1988 99 7 3 chr15 26667832 26668116 -59027638 + AluY SINE Alu 19 303 -8 2480 53 3 0 chr15 26668280 26668584 -59027170 + AluY SINE Alu 1 305 -6 611 282 137 34 chr15 26668940 26669084 -59026670 + MIR SINE MIR 3 131 -131 2026 127 21 26 chr15 26669084 26669461 -59026293 - THE1C LTR MaLR 0 375 1 611 282 137 34 chr15 26669461 26669550 -59026204 + MIR SINE MIR 131 260 -2 309 272 189 20 chr15 26669760 26669977 -59025777 + MIR SINE MIR 14 262 0 226 309 39 83 chr15 26670647 26670871 -59024883 - L2 LINE L2 -278 2994 2783 2285 109 0 0 chr15 26671131 26671434 -59024320 - AluSc SINE Alu -6 303 1 418 326 88 6 chr15 26672039 26672220 -59023534 - MER117 DNA MER1_type -1 196 1 695 291 60 87 chr15 26673257 26673768 -59021986 + L2 LINE L2 2774 3272 0 21 0 0 0 chr15 26674742 26674763 -59020991 + AT_rich Low_complexity Low_complexity 1 21 0 1026 314 151 65 chr15 26674984 26676167 -59019587 + L2 LINE L2 1198 2481 -833 594 334 114 60 chr15 26676171 26676708 -59019046 + L2 LINE L2 2670 3272 0 390 317 45 60 chr15 26677832 26678097 -59017657 + L2 LINE L2 3028 3288 -25 649 277 95 40 chr15 26678368 26678693 -59017061 + LTR16C LTR ERVL 149 491 0 252 316 79 0 chr15 26679717 26679793 -59015961 + MIR3 SINE MIR 9 90 -118 1374 162 0 0 chr15 26679793 26680009 -59015745 - AluSg/x SINE Alu -1 311 96 207 69 0 0 chr15 26680923 26680952 -59014802 + (TG)n Simple_repeat Simple_repeat 2 30 0 199 349 63 0 chr15 26681566 26681629 -59014125 - L2 LINE L2 -60 3212 3146 921 201 98 5 chr15 26682269 26682463 -59013291 + MER58A DNA MER1_type 10 221 -3 1723 166 41 3 chr15 26682666 26683036 -59012718 + AluSx SINE Alu 1 381 0 232 411 26 22 chr15 26683065 26683291 -59012463 - L2 LINE L2 -237 3035 2809 307 323 102 56 chr15 26683434 26683827 -59011927 - L2 LINE L2 0 3272 2862 299 211 0 13 chr15 26683990 26684066 -59011688 + GA-rich Low_complexity Low_complexity 2 76 0 192 40 0 0 chr15 26684159 26684184 -59011570 + (TC)n Simple_repeat Simple_repeat 2 26 0 182 293 52 0 chr15 26684373 26684431 -59011323 + L2 LINE L2 2698 2758 -556 2550 180 10 2 chr15 26684970 26685453 -59010301 - L1PA15 LINE L1 -2 6163 5677 708 219 12 18 chr15 26685453 26685612 -59010142 - AluSq SINE Alu -14 299 140 2023 143 0 3 chr15 26685893 26686193 -59009561 - AluSg SINE Alu -11 299 1 13510 208 25 4 chr15 26686194 26689004 -59006750 - L1PA15 LINE L1 -478 5687 2938 725 0 0 12 chr15 26689004 26689090 -59006664 + (TTTC)n Simple_repeat Simple_repeat 1 85 0 13510 208 25 4 chr15 26689090 26689823 -59005931 - L1PA15 LINE L1 -3227 2938 2055 2646 91 13 11 chr15 26689823 26690197 -59005557 + THE1C LTR MaLR 1 375 0 13510 208 25 4 chr15 26690197 26690426 -59005328 - L1PA15 LINE L1 -4110 2055 1832 469 250 102 49 chr15 26691272 26691461 -59004293 - MIR SINE MIR -56 206 6 202 188 0 0 chr15 26693129 26693161 -59002593 + polypurine Low_complexity Low_complexity 4 35 0 729 295 66 16 chr15 26693602 26693968 -59001786 - MLT1I LTR MaLR -21 388 5 283 297 123 0 chr15 26695638 26695776 -58999978 - L2 LINE L2 0 3313 3159 250 354 126 37 chr15 26696208 26696454 -58999300 - L2 LINE L2 -22 3250 2983 475 287 133 10 chr15 26697942 26698137 -58997617 + L3 LINE CR1 1014 1232 -345 404 243 0 10 chr15 26698557 26698660 -58997094 + LTR67 LTR ERVL 456 557 0 6095 135 6 19 chr15 26698733 26698912 -58996842 - L1MA5 LINE L1 0 6300 6120 2118 94 52 0 chr15 26698912 26699200 -58996554 - AluSp SINE Alu -10 303 1 6095 135 6 19 chr15 26699200 26700454 -58995300 - L1MA5 LINE L1 -180 6120 4885 307 311 95 33 chr15 26701115 26701421 -58994333 + LTR16C LTR ERVL 167 491 0 1112 232 40 88 chr15 26701554 26701976 -58993778 + MLT2B3 LTR ERVL 153 554 0 419 263 167 0 chr15 26702042 26702156 -58993598 + L3 LINE CR1 1238 1370 -207 547 309 12 0 chr15 26702376 26702541 -58993213 - Charlie8 DNA MER1_type -2152 265 99 207 342 105 26 chr15 26702903 26703017 -58992737 + L2 LINE L2 3170 3292 -21 1121 290 74 20 chr15 26703867 26704274 -58991480 - L2 LINE L2 -2 3311 2883 24 53 0 0 chr15 26705211 26705249 -58990505 + AT_rich Low_complexity Low_complexity 1 38 0 482 215 70 59 chr15 26705404 26705590 -58990164 + L1MC5 LINE L1 7503 7690 -271 1969 63 0 0 chr15 26705668 26705922 -58989832 + L1PA5 LINE L1 5901 6154 0 622 280 98 0 chr15 26706086 26706322 -58989432 - LTR33 LTR ERVL -260 261 3 332 246 131 31 chr15 26706394 26706524 -58989230 - MIR3 SINE MIR -3 205 63 6458 51 9 2 chr15 26706545 26707363 -58988391 + L1PA7 LINE L1 5332 6154 0 516 248 128 0 chr15 26707581 26707863 -58987891 - L1ME4a LINE L1 -31 6090 5773 201 122 20 61 chr15 26707925 26707974 -58987780 + (TA)n Simple_repeat Simple_repeat 2 48 0 25 0 0 0 chr15 26707992 26708017 -58987737 + AT_rich Low_complexity Low_complexity 1 25 0 276 315 39 16 chr15 26708053 26708180 -58987574 + MIR3 SINE MIR 11 140 -68 2209 131 0 10 chr15 26708236 26708548 -58987206 - AluSx SINE Alu -3 309 1 695 287 126 0 chr15 26710314 26710697 -58985057 - L2 LINE L2 -93 3220 2772 261 200 18 0 chr15 26710775 26710830 -58984924 - L2 LINE L2 -827 2487 2432 219 188 0 42 chr15 26710892 26710940 -58984814 - MIR3 SINE MIR -2 206 161 2417 80 0 10 chr15 26711971 26712284 -58983470 + AluY SINE Alu 2 311 0 22 0 0 0 chr15 26713153 26713175 -58982579 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr15 26714053 26714085 -58981669 + AT_rich Low_complexity Low_complexity 1 32 0 2273 89 31 0 chr15 26715550 26715843 -58979911 - AluSg SINE Alu -7 303 2 21 0 0 0 chr15 26716079 26716100 -58979654 + AT_rich Low_complexity Low_complexity 1 21 0 258 105 0 0 chr15 26717898 26717936 -58977818 + (ATG)n Simple_repeat Simple_repeat 1 38 0 22 56 0 0 chr15 26718999 26719035 -58976719 + AT_rich Low_complexity Low_complexity 1 36 0 473 239 95 112 chr15 26719611 26720099 -58975655 + Charlie8 DNA MER1_type 1 470 -1947 987 156 0 40 chr15 26720099 26720272 -58975482 + FRAM SINE Alu 1 163 -13 609 224 70 0 chr15 26721205 26721361 -58974393 - MIR SINE MIR -3 259 93 288 0 0 0 chr15 26721382 26721414 -58974340 + (CA)n Simple_repeat Simple_repeat 1 32 0 438 156 52 0 chr15 26722451 26722547 -58973207 - L1MB7 LINE L1 -13 6171 6071 587 291 79 23 chr15 26722672 26723026 -58972728 - MARNA DNA Mariner -126 460 87 21 0 0 0 chr15 26724240 26724261 -58971493 + AT_rich Low_complexity Low_complexity 1 21 0 840 174 0 7 chr15 26725142 26725280 -58970474 - AluJo SINE Alu -6 306 170 725 131 0 57 chr15 26725281 26725403 -58970351 - AluJo SINE Alu -197 115 1 32 67 0 0 chr15 26725915 26725975 -58969779 + AT_rich Low_complexity Low_complexity 1 60 0 5083 124 46 2 chr15 26726003 26726809 -58968945 - L1PA16 LINE L1 -9 6472 5632 4352 55 37 0 chr15 26726821 26727386 -58968368 - L1PA7 LINE L1 0 6154 5569 11884 110 19 36 chr15 26727390 26729876 -58965878 - L1PA16 LINE L1 -3961 2500 5 4068 211 15 2 chr15 26729881 26730768 -58964986 - L1P LINE L1 -815 6034 5137 1058 172 24 0 chr15 26730778 26730947 -58964807 - AluSx SINE Alu -139 173 1 6415 175 31 16 chr15 26730948 26732749 -58963005 - L1PA15-16 LINE L1 -3101 3748 1915 21 0 0 0 chr15 26733658 26733679 -58962075 + AT_rich Low_complexity Low_complexity 1 21 0 321 361 0 0 chr15 26735081 26735189 -58960565 - MIR3 SINE MIR -6 202 95 3545 139 53 2 chr15 26735318 26735907 -58959847 + LTR31 LTR ERV1 1 619 0 2371 108 0 0 chr15 26737032 26737338 -58958416 + AluSq SINE Alu 1 306 -7 21 57 0 0 chr15 26738586 26738621 -58957133 + AT_rich Low_complexity Low_complexity 1 35 0 192 97 0 0 chr15 26739141 26739172 -58956582 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 826 206 106 0 chr15 26739450 26739639 -58956115 + MER3 DNA MER1_type 1 209 0 1137 278 28 7 chr15 26740886 26741172 -58954582 - LTR16A LTR ERVL -5 445 154 1279 255 130 40 chr15 26741172 26741718 -58954036 - MLT1G1 LTR MaLR 0 595 1 1777 209 70 5 chr15 26741894 26742291 -58953463 + MER110 LTR ERV1 57 479 -12 42552 34 23 2 chr15 26743530 26749549 -58946205 + L1PA2 LINE L1 2 6155 0 22 0 0 0 chr15 26749784 26749806 -58945948 + AT_rich Low_complexity Low_complexity 1 22 0 792 108 48 0 chr15 26750312 26750498 -58945256 + L1MA7 LINE L1 5986 6286 -5 21 36 0 0 chr15 26750498 26750526 -58945228 + AT_rich Low_complexity Low_complexity 1 28 0 10043 192 12 5 chr15 26750539 26751423 -58944331 - L1PA15 LINE L1 -4 6161 5284 1894 147 155 13 chr15 26751423 26751798 -58943956 + MSTA LTR MaLR 1 428 0 10043 192 12 5 chr15 26751798 26753782 -58941972 - L1PA15 LINE L1 -881 5284 3275 32 43 0 0 chr15 26756273 26756319 -58939435 + AT_rich Low_complexity Low_complexity 1 46 0 719 245 116 37 chr15 26757113 26757510 -58938244 + L1M4c LINE L1 1133 1625 -4759 2302 67 44 0 chr15 26758255 26758553 -58937201 - AluY SINE Alu 0 311 1 721 340 52 17 chr15 26758938 26759229 -58936525 - L3 LINE CR1 -124 1453 1153 1220 187 78 34 chr15 26759229 26759497 -58936257 + MLT1A2 LTR MaLR 95 374 0 265 376 55 0 chr15 26759500 26759609 -58936145 - L3 LINE CR1 -941 636 522 26 0 0 0 chr15 26759918 26759944 -58935810 + AT_rich Low_complexity Low_complexity 1 26 0 345 139 0 109 chr15 26760917 26761119 -58934635 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 265 260 6 29 chr15 26761077 26761250 -58934504 + (AAATG)n Simple_repeat Simple_repeat 2 170 0 * 357 141 0 96 chr15 26761283 26761482 -58934272 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 238 315 69 15 chr15 26761485 26761615 -58934139 - MIR SINE MIR -60 202 66 1867 120 43 4 chr15 26763760 26764036 -58931718 - AluSx SINE Alu -25 287 1 3015 207 40 8 chr15 26765327 26766085 -58929669 - L1M4 LINE L1 -996 5150 4369 9606 152 46 11 chr15 26766093 26768851 -58926903 - L1MA1 LINE L1 -171 7550 4688 4708 166 23 1 chr15 26768849 26769640 -58926114 - L1MA1 LINE L1 -5707 1858 1051 * 28 29 0 0 chr15 26769650 26769685 -58926069 + AT_rich Low_complexity Low_complexity 1 35 0 328 273 103 64 chr15 26770001 26770043 -58925711 + MLT1J LTR MaLR 207 246 -265 2212 176 19 35 chr15 26770043 26770476 -58925278 - MSTB LTR MaLR 0 426 1 328 273 103 64 chr15 26770476 26770676 -58925078 + MLT1J LTR MaLR 246 371 -140 256 308 0 19 chr15 26770817 26770921 -58924833 + L1 LINE L1 4089 4190 -1956 23 0 0 0 chr15 26771252 26771275 -58924479 + AT_rich Low_complexity Low_complexity 1 23 0 775 153 53 7 chr15 26772420 26772570 -58923184 + Tigger1 DNA MER2_type 1 157 -2261 * 1293 154 9 0 chr15 26772559 26772773 -58922981 + Tigger1 DNA MER2_type 2202 2417 -1 204 254 239 0 chr15 26773540 26773611 -58922143 - L2 LINE L2 0 3272 3185 738 308 61 4 chr15 26774436 26774683 -58921071 + MIR SINE MIR 2 262 0 11088 186 29 8 chr15 26774691 26778832 -58916922 + L1PB3 LINE L1 2635 6861 -9 843 302 37 39 chr15 26779183 26779593 -58916161 + MLT1I LTR MaLR 1 409 0 298 309 71 16 chr15 26780144 26780270 -58915484 + MIR SINE MIR 19 151 -57 3832 160 82 28 chr15 26780460 26781203 -58914551 + LTR39 LTR ERV1 1 783 0 21 0 0 0 chr15 26781518 26781539 -58914215 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr15 26782656 26782679 -58913075 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr15 26783079 26783100 -58912654 + AT_rich Low_complexity Low_complexity 1 21 0 259 241 298 21 chr15 26783155 26783296 -58912458 - MER5A DNA MER1_type -1 188 9 210 296 57 0 chr15 26783363 26783451 -58912303 + MIR SINE MIR 127 219 -43 * 1686 270 107 2 chr15 26783444 26783984 -58911770 - L2 LINE L2 -1764 1550 954 225 213 21 85 chr15 26783987 26784081 -58911673 - L1M4 LINE L1 -3390 2756 2669 251 257 62 28 chr15 26784331 26784475 -58911279 - L1M4 LINE L1 -3783 2363 2215 42587 35 21 1 chr15 26785176 26791207 -58904547 + L1PA2 LINE L1 1 6155 0 264 327 64 26 chr15 26791240 26791396 -58904358 + L1MCc LINE L1 1180 1341 -5082 17337 186 29 14 chr15 26791459 26795422 -58900332 - L1PA13 LINE L1 -1466 5331 1254 180 0 0 0 chr15 26795422 26795442 -58900312 + (CAG)n Simple_repeat Simple_repeat 1 20 0 17337 186 29 14 chr15 26795442 26796716 -58899038 - L1PA13 LINE L1 -5543 1254 1 181 0 33 33 chr15 26796831 26796861 -58898893 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 1544 193 71 7 chr15 26796888 26797266 -58898488 - L1ME1 LINE L1 -3 6163 5771 744 308 94 19 chr15 26797291 26797810 -58897944 - HAL1 LINE L1 -808 1699 1142 397 308 56 7 chr15 26798517 26798660 -58897094 + MIR SINE MIR 11 160 -102 252 137 0 0 chr15 26798696 26798747 -58897007 + (TA)n Simple_repeat Simple_repeat 2 52 0 264 197 45 30 chr15 26798759 26798825 -58896929 + MIR SINE MIR 196 262 0 356 271 122 0 chr15 26798961 26799068 -58896686 + MIR SINE MIR 122 241 -21 243 309 86 0 chr15 26799407 26799488 -58896266 - MIR SINE MIR -143 119 32 330 67 0 0 chr15 26800152 26800197 -58895557 + (TG)n Simple_repeat Simple_repeat 1 45 0 903 327 161 7 chr15 26802160 26802305 -58893449 + L2 LINE L2 2361 2482 -790 2142 109 19 53 chr15 26802305 26802680 -58893074 + THE1B LTR MaLR 1 362 -2 903 327 161 7 chr15 26802680 26803123 -58892631 + L2 LINE L2 2482 3043 -229 212 196 0 22 chr15 26803483 26803529 -58892225 + GA-rich Low_complexity Low_complexity 2 46 0 296 393 47 9 chr15 26803716 26803930 -58891824 - L2 LINE L2 -540 2774 2553 343 316 71 37 chr15 26805175 26805339 -58890415 + L2 LINE L2 2762 2928 -344 457 325 40 7 chr15 26805352 26805503 -58890251 + L2 LINE L2 3158 3313 0 3181 186 28 0 chr15 26805641 26805950 -58889804 + L1PA15 LINE L1 4082 4381 -1765 345 62 0 0 chr15 26805950 26805998 -58889756 + (CA)n Simple_repeat Simple_repeat 1 48 0 3181 186 28 0 chr15 26805998 26806300 -58889454 + L1PA15 LINE L1 4381 4710 -1436 1418 205 23 4 chr15 26806300 26806559 -58889195 + AluJo SINE Alu 1 264 -48 5186 127 58 0 chr15 26806577 26807986 -58887768 + L1PA15 LINE L1 4703 6165 0 28 0 0 0 chr15 26808033 26808061 -58887693 + AT_rich Low_complexity Low_complexity 1 28 0 265 352 93 6 chr15 26808761 26808923 -58886831 + L2 LINE L2 2709 2884 -430 37 0 0 0 chr15 26808949 26808986 -58886768 + AT_rich Low_complexity Low_complexity 1 37 0 1266 275 93 24 chr15 26809131 26809670 -58886084 + L1MC4 LINE L1 5387 5962 -1846 2321 87 0 3 chr15 26809898 26810196 -58885558 - AluY SINE Alu -14 297 1 306 0 0 0 chr15 26811311 26811345 -58884409 + (GA)n Simple_repeat Simple_repeat 2 35 0 192 234 0 0 chr15 26811345 26811392 -58884362 + (TG)n Simple_repeat Simple_repeat 2 48 0 423 355 18 0 chr15 26811748 26811914 -58883840 - MIR3 SINE MIR -9 199 31 195 139 0 0 chr15 26812439 26812475 -58883279 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 71 0 0 chr15 26814181 26814223 -58881531 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr15 26814719 26814754 -58881000 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr15 26814998 26815025 -58880729 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr15 26815154 26815175 -58880579 + AT_rich Low_complexity Low_complexity 1 21 0 351 295 45 0 chr15 26815338 26815450 -58880304 + MIR3 SINE MIR 87 203 -5 189 147 0 0 chr15 26816504 26816538 -58879216 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 316 276 10 31 chr15 26818796 26818894 -58876860 + L1MC4 LINE L1 6614 6709 -1333 * 328 211 58 67 chr15 26818824 26818928 -58876826 - L1MC4 LINE L1 -1326 6716 6614 413 61 0 15 chr15 26818928 26818994 -58876760 + (GA)n Simple_repeat Simple_repeat 2 66 0 419 270 26 9 chr15 26818994 26819109 -58876645 + MER5B DNA MER1_type 59 175 -3 590 216 43 7 chr15 26819366 26819505 -58876249 + L2 LINE L2 2651 2794 -520 427 231 54 8 chr15 26821620 26821750 -58874004 + MER103 DNA DNA 22 157 -9 23 0 0 0 chr15 26821804 26821827 -58873927 + AT_rich Low_complexity Low_complexity 1 23 0 220 309 132 0 chr15 26823596 26823664 -58872090 - L2 LINE L2 -52 3220 3144 35 24 0 0 chr15 26824095 26824137 -58871617 + AT_rich Low_complexity Low_complexity 1 42 0 789 260 24 37 chr15 26825816 26826062 -58869692 - MIR SINE MIR -19 243 1 382 91 0 104 chr15 26826869 26826946 -58868808 - AluS SINE Alu -233 69 1 940 200 17 0 chr15 26827332 26827507 -58868247 - AluSg/x SINE Alu -1 311 134 2147 123 0 3 chr15 26827507 26827815 -58867939 - AluSx SINE Alu -5 307 1 585 76 13 0 chr15 26828229 26828308 -58867446 - MADE1 DNA Mariner 0 80 1 23 54 0 0 chr15 26829227 26829264 -58866490 + AT_rich Low_complexity Low_complexity 1 37 0 907 262 27 0 chr15 26829656 26829877 -58865877 + MIR SINE MIR 36 262 0 541 220 55 0 chr15 26830445 26830554 -58865200 + MIR3 SINE MIR 82 196 -12 181 308 75 47 chr15 26833141 26833248 -58862506 + L2 LINE L2 3197 3306 -7 289 323 203 23 chr15 26833585 26833718 -58862036 - MIR3 SINE MIR -6 202 46 1263 237 164 68 chr15 26835449 26835938 -58859816 - MLT1F LTR MaLR 0 542 7 3670 150 24 3 chr15 26836174 26836759 -58858995 + MSTA-int LTR MaLR 1055 1651 0 1317 122 15 5 chr15 26836759 26836956 -58858798 + MSTA LTR MaLR 1 199 -227 7517 29 1 0 chr15 26836956 26838441 -58857313 + L1PA4 LINE L1 4670 6155 0 381 237 62 0 chr15 26838473 26838570 -58857184 + MER5A DNA MER1_type 9 111 -78 1516 143 4 12 chr15 26838615 26838860 -58856894 + MSTA LTR MaLR 185 427 -1 1805 260 20 24 chr15 26838868 26839418 -58856336 + L1ME1 LINE L1 5610 6157 -9 1283 275 94 8 chr15 26839425 26840222 -58855532 + L1ME LINE L1 1850 2676 -3539 668 285 40 10 chr15 26840226 26840426 -58855328 - MER58C DNA MER1_type -4 211 6 1426 205 80 45 chr15 26840433 26840857 -58854897 + L1ME LINE L1 2673 3111 -3104 313 211 95 21 chr15 26840850 26840945 -58854809 + L1MC4 LINE L1 7914 8015 -27 * 340 233 147 69 chr15 26841412 26841528 -58854226 - MER5B DNA MER1_type -1 177 53 4611 193 13 8 chr15 26842314 26843262 -58852492 - L1PA13 LINE L1 -3146 3651 2700 880 148 0 0 chr15 26843265 26843400 -58852354 - L1PA13 LINE L1 -6190 597 463 1432 199 0 0 chr15 26843408 26843684 -58852070 - L1PA15-16 LINE L1 -4040 2809 2534 1916 168 37 0 chr15 26843689 26843986 -58851768 + AluSx SINE Alu 3 310 -2 400 180 5 0 chr15 26843986 26844072 -58851682 + L1P LINE L1 2392 2480 -3666 2333 242 85 7 chr15 26844153 26844927 -58850827 + L1ME LINE L1 4517 5351 -864 481 184 0 0 chr15 26844927 26845003 -58850751 + FRAM SINE Alu 77 152 -24 446 161 11 0 chr15 26845027 26845114 -58850640 + L1ME LINE L1 5332 5419 -816 * 911 172 25 6 chr15 26845111 26845268 -58850486 + MST-int LTR MaLR 1179 1338 -313 772 209 120 4 chr15 26845263 26845488 -58850266 + L1ME LINE L1 5423 5673 -562 * 2615 153 7 5 chr15 26845490 26845915 -58849839 + MSTB LTR MaLR 1 426 0 4923 178 7 3 chr15 26845915 26846781 -58848973 + MSTB-int LTR MaLR 1 869 -782 232 279 23 23 chr15 26847677 26847763 -58847991 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 289 155 35 0 chr15 26847854 26847912 -58847842 + (TATG)n Simple_repeat Simple_repeat 3 62 0 345 24 0 0 chr15 26848246 26848288 -58847466 + (CA)n Simple_repeat Simple_repeat 2 43 0 499 245 28 63 chr15 26848511 26848654 -58847100 + L2 LINE L2 346 483 -2831 356 233 80 73 chr15 26848649 26848799 -58846955 + L2 LINE L2 3146 3296 -17 * 2056 139 3 0 chr15 26849739 26850040 -58845714 + AluSx SINE Alu 1 302 -10 252 0 0 0 chr15 26850929 26850957 -58844797 + (CA)n Simple_repeat Simple_repeat 1 28 0 264 289 62 31 chr15 26851092 26851189 -58844565 - MIR3 SINE MIR -26 182 83 445 312 5 70 chr15 26852194 26852393 -58843361 + MIR SINE MIR 13 198 -64 368 159 0 0 chr15 26852655 26852718 -58843036 + L1PA15-16 LINE L1 2877 2939 -3910 2158 60 15 96 chr15 26852826 26853160 -58842594 + AluY SINE Alu 5 311 0 2186 190 53 0 chr15 26853185 26853659 -58842095 + L1MA9 LINE L1 5814 6312 0 948 269 67 0 chr15 26853721 26854004 -58841750 + L1MC4 LINE L1 7597 7898 -144 717 206 0 0 chr15 26854430 26854561 -58841193 - FLAM_C SINE Alu -12 131 1 426 20 0 0 chr15 26854598 26854649 -58841105 + (TG)n Simple_repeat Simple_repeat 2 52 0 27 0 0 0 chr15 26854679 26854706 -58841048 + AT_rich Low_complexity Low_complexity 1 27 0 33 80 0 0 chr15 26855327 26855402 -58840352 + AT_rich Low_complexity Low_complexity 1 75 0 255 238 0 16 chr15 26855422 26855485 -58840269 + (CATA)n Simple_repeat Simple_repeat 2 63 0 486 0 0 0 chr15 26855590 26855644 -58840110 + (TA)n Simple_repeat Simple_repeat 1 54 0 24 77 0 0 chr15 26856004 26856056 -58839698 + AT_rich Low_complexity Low_complexity 1 52 0 237 222 48 32 chr15 26856616 26856679 -58839075 - MIR3 SINE MIR -6 202 139 15811 166 26 111 chr15 26856698 26858343 -58837411 - L1PA13 LINE L1 -8 7593 5810 7472 28 4 0 chr15 26858343 26859351 -58836403 - L1PA4 LINE L1 -6 6149 5142 15811 166 26 111 chr15 26859351 26860541 -58835213 - L1PA13 LINE L1 -1791 5810 4520 2605 70 3 20 chr15 26860541 26860896 -58834858 - MER41A LTR ERV1 -88 466 118 15811 166 26 111 chr15 26860896 26862578 -58833176 - L1PA13 LINE L1 -3081 4520 3346 2020 108 38 0 chr15 26862578 26862865 -58832889 + AluSq SINE Alu 3 300 -13 15811 166 26 111 chr15 26862865 26863960 -58831794 - L1PA13 LINE L1 -4255 3346 2159 5651 145 49 21 chr15 26864262 26865393 -58830361 - L1MA4A LINE L1 -3 6300 5137 202 152 43 22 chr15 26865594 26865640 -58830114 + (TG)n Simple_repeat Simple_repeat 2 48 0 216 0 0 0 chr15 26865699 26865723 -58830031 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 21 0 0 0 chr15 26865756 26865777 -58829977 + AT_rich Low_complexity Low_complexity 1 21 0 903 281 63 52 chr15 26865819 26866264 -58829490 + LTR16A LTR ERVL 1 450 0 2016 118 0 0 chr15 26866899 26867178 -58828576 - AluSx SINE Alu -33 279 1 470 217 9 0 chr15 26868516 26868622 -58827132 + MER3 DNA MER1_type 63 122 -87 1401 161 121 3 chr15 26868631 26868979 -58826775 + MER3 DNA MER1_type 2236 2624 0 23 0 0 0 chr15 26869190 26869213 -58826541 + AT_rich Low_complexity Low_complexity 1 23 0 1716 145 60 33 chr15 26869532 26869897 -58825857 - THE1C LTR MaLR 0 375 1 2457 233 45 29 chr15 26870115 26870439 -58825315 + L1M4 LINE L1 2338 2655 -3491 1657 171 150 6 chr15 26870439 26870785 -58824969 - MSTD LTR MaLR 0 396 1 2457 233 45 29 chr15 26870785 26871324 -58824430 + L1M4 LINE L1 2655 3215 -2931 752 249 63 0 chr15 26871341 26871562 -58824192 + L1MCc LINE L1 1119 1353 -5070 406 294 16 0 chr15 26871552 26871678 -58824076 - L1ME LINE L1 -525 5639 5512 * 909 172 0 0 chr15 26871672 26871841 -58823913 + L1 LINE L1 2873 3041 -3105 * 6200 167 24 4 chr15 26871839 26873030 -58822724 + L1MA7 LINE L1 4134 5348 -798 1248 175 26 4 chr15 26873012 26873246 -58822508 + L1MA7 LINE L1 5549 5787 -504 * 259 162 86 0 chr15 26873248 26873353 -58822401 + (TA)n Simple_repeat Simple_repeat 1 114 0 1558 185 51 15 chr15 26873353 26873688 -58822066 + L1MA7 LINE L1 5782 6128 -163 * 4791 150 30 54 chr15 26873685 26874696 -58821058 + L1MA7 LINE L1 5304 6289 -2 2442 229 53 18 chr15 26874709 26875488 -58820266 + L1 LINE L1 3025 3830 -2316 229 300 100 0 chr15 26875489 26875579 -58820175 - L2 LINE L2 -8 3305 3207 * 378 303 106 0 chr15 26875574 26875706 -58820048 - MIR SINE MIR -70 192 47 321 344 16 0 chr15 26876763 26876891 -58818863 + MIR3 SINE MIR 31 160 -48 1288 199 112 85 chr15 26878070 26878562 -58817192 - MLT1D LTR MaLR 0 505 1 2365 94 0 0 chr15 26878792 26879091 -58816663 - AluSg SINE Alu -11 299 1 12206 217 42 10 chr15 26879213 26884239 -58811515 - L1PA16 LINE L1 -9 7595 2374 2306 83 0 23 chr15 26884239 26884539 -58811215 - AluSg SINE Alu -17 293 1 12206 217 42 10 chr15 26884539 26884924 -58810830 - L1PA16 LINE L1 -5230 2374 2003 270 296 65 83 chr15 26885279 26885556 -58810198 - L1M2 LINE L1 -5782 1067 796 747 328 37 12 chr15 26886327 26886730 -58809024 - L1PA16 LINE L1 -7167 414 2 3021 223 10 22 chr15 26886983 26887673 -58808081 + L1PB1 LINE L1 2 683 -6104 * 3846 214 35 41 chr15 26887668 26889313 -58806441 + L1PB1 LINE L1 1329 3007 -3790 17081 157 85 7 chr15 26889316 26892901 -58802853 + L1M1 LINE L1 17 3875 -3690 306 0 0 0 chr15 26892903 26892937 -58802817 + (TCTCCC)n Simple_repeat Simple_repeat 5 38 0 5998 69 20 64 chr15 26892937 26894868 -58800886 + SVA Other Other 72 1383 -3 5371 193 43 9 chr15 26894879 26896155 -58799599 + L1M1 LINE L1 4232 5551 -2014 7807 97 12 40 chr15 26896158 26897473 -58798281 - L1P LINE L1 -3446 2700 1423 6559 26 0 0 chr15 26897473 26898234 -58797520 + L1PA4 LINE L1 5392 6152 -3 10348 190 17 9 chr15 26898275 26901323 -58794431 + L1PB1 LINE L1 3372 6442 -360 500 130 11 0 chr15 26901347 26901439 -58794315 + L1PA15 LINE L1 6065 6157 -8 183 42 0 0 chr15 26901468 26901492 -58794262 + (TA)n Simple_repeat Simple_repeat 1 24 0 2161 120 16 46 chr15 26901494 26901861 -58793893 + L1PB1 LINE L1 6445 6800 -2 570 118 0 0 chr15 26901972 26902065 -58793689 + L1PA15 LINE L1 6065 6157 -8 35 29 5 0 chr15 26902299 26902383 -58793371 + AT_rich Low_complexity Low_complexity 1 49 0 851 138 17 50 chr15 26903448 26903629 -58792125 + MLT1B LTR MaLR 1 175 -215 1753 224 73 14 chr15 26904859 26905639 -58790115 + L1M2a LINE L1 2057 2897 -4599 360 363 8 17 chr15 26905647 26905884 -58789870 + L1M2a LINE L1 1133 1367 -6199 505 196 58 65 chr15 26905884 26906022 -58789732 - Tigger2a DNA MER2_type -297 137 1 305 254 49 23 chr15 26906031 26906160 -58789594 - L1M4c LINE L1 -4418 1965 1461 * 9772 221 35 21 chr15 26906155 26909860 -58785894 - L1MA9 LINE L1 -204 6108 2346 359 272 56 51 chr15 26909860 26910079 -58785675 + MSTB2 LTR MaLR 1 227 -230 2788 218 41 9 chr15 26910111 26911141 -58784613 + L1M2a LINE L1 3345 4409 -3156 228 217 61 0 chr15 26912075 26912190 -58783564 + (TA)n Simple_repeat Simple_repeat 2 123 0 261 193 36 24 chr15 26912898 26912981 -58782773 + (CATATA)n Simple_repeat Simple_repeat 4 87 0 25 51 0 0 chr15 26913081 26913120 -58782634 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr15 26913364 26913388 -58782366 + AT_rich Low_complexity Low_complexity 1 24 0 2357 186 10 14 chr15 26914182 26914670 -58781084 + L1MD1 LINE L1 5757 6242 0 10785 213 34 5 chr15 26914723 26918474 -58777280 - L1PB4 LINE L1 -5 6208 2345 486 0 0 0 chr15 26918474 26918528 -58777226 + (TA)n Simple_repeat Simple_repeat 2 55 0 10785 213 34 5 chr15 26918528 26918593 -58777161 - L1PB4 LINE L1 -3868 2345 2283 3326 200 43 66 chr15 26918594 26918694 -58777060 - L1PB4 LINE L1 -4173 2030 1929 2191 90 52 60 chr15 26918694 26919059 -58776695 - THE1B LTR MaLR -2 362 1 11200 104 12 6 chr15 26919059 26920629 -58775125 - THE1B-int LTR MaLR 0 1580 1 2065 139 51 20 chr15 26920629 26920982 -58774772 - THE1B LTR MaLR 0 364 1 3326 200 43 66 chr15 26920982 26922160 -58773594 - L1PB4 LINE L1 -4271 1932 694 2270 125 31 17 chr15 26923369 26923728 -58772026 + THE1B LTR MaLR 1 364 0 9492 113 12 69 chr15 26923728 26925403 -58770351 + THE1B-int LTR MaLR 1 1580 0 2222 141 5 16 chr15 26925403 26925771 -58769983 + THE1B LTR MaLR 1 364 0 1495 234 49 28 chr15 26925942 26926531 -58769223 + L1ME3A LINE L1 5536 6167 -3 1258 230 124 47 chr15 26927030 26927499 -58768255 - MLT1D LTR MaLR 0 505 1 350 271 132 33 chr15 26927612 26927885 -58767869 + L1MCc LINE L1 24 323 -6100 23 33 0 0 chr15 26928029 26928059 -58767695 + AT_rich Low_complexity Low_complexity 1 30 0 950 340 105 18 chr15 26928218 26929150 -58766604 + L1MCc LINE L1 828 1845 -4891 1581 247 16 7 chr15 26929155 26929608 -58766146 + L1M4 LINE L1 4887 5343 -803 7716 116 4 10 chr15 26929609 26931610 -58764144 + L1PA8 LINE L1 4178 6184 0 351 300 80 60 chr15 26931744 26931994 -58763760 + L1MCc LINE L1 3352 3606 -3335 472 120 0 0 chr15 26932053 26932128 -58763626 + L1PA7 LINE L1 6078 6152 -2 3256 124 36 4 chr15 26932204 26932727 -58763027 + L1PA11 LINE L1 5634 6173 -1 292 233 25 74 chr15 26932756 26932919 -58762835 + L1MCc LINE L1 3689 3843 -3098 2468 251 70 66 chr15 26933015 26934093 -58761661 + HAL1 LINE L1 1240 2321 -186 187 328 17 0 chr15 26934601 26934659 -58761095 - MIR SINE MIR -6 256 198 2661 170 49 42 chr15 26934793 26935346 -58760408 + MER74A LTR ERVL 2 558 0 24 53 0 0 chr15 26935522 26935560 -58760194 + AT_rich Low_complexity Low_complexity 1 38 0 228 375 0 10 chr15 26935623 26935719 -58760035 - MIR SINE MIR -111 151 57 21 82 0 0 chr15 26936337 26936386 -58759368 + AT_rich Low_complexity Low_complexity 1 49 0 342 294 190 27 chr15 26937060 26937244 -58758510 + MIR SINE MIR 7 220 -42 240 298 24 24 chr15 26938833 26938917 -58756837 + L2 LINE L2 3195 3278 -35 339 269 10 19 chr15 26938994 26939098 -58756656 - MER5A DNA MER1_type -77 112 10 2234 107 0 3 chr15 26939221 26939530 -58756224 + AluSg SINE Alu 1 308 -2 191 200 0 0 chr15 26939690 26939725 -58756029 + MIR SINE MIR 228 262 0 433 347 94 18 chr15 26940154 26940485 -58755269 - L2 LINE L2 -778 2536 2181 720 222 12 12 chr15 26940551 26940726 -58755028 + MER33 DNA MER1_type 1 165 -87 709 172 47 0 chr15 26940726 26940854 -58754900 + AluJb SINE Alu 1 134 -178 281 341 96 58 chr15 26941281 26941489 -58754265 - MIR SINE MIR -1 261 46 1850 135 3 36 chr15 26941777 26942081 -58753673 + AluSx SINE Alu 1 294 -18 322 321 36 18 chr15 26943621 26943789 -58751965 + L3b LINE CR1 1324 1494 -89 344 227 7 73 chr15 26944181 26944331 -58751423 + A-rich Low_complexity Low_complexity 3 142 0 234 325 96 0 chr15 26945135 26945218 -58750536 + MIR SINE MIR 33 123 -85 740 115 25 0 chr15 26946898 26947020 -58748734 - L1MA5A LINE L1 0 6297 6173 1778 124 11 0 chr15 26947182 26947455 -58748299 + L1PA16 LINE L1 5885 6160 -6 572 266 0 0 chr15 26948537 26948661 -58747093 - MER94 DNA DNA -1 133 10 3828 188 92 4 chr15 26948673 26949514 -58746240 + MER63C DNA MER1_type 14 928 -2 281 308 9 47 chr15 26949557 26949664 -58746090 - L2 LINE L2 -3 3310 3208 347 291 267 12 chr15 26950422 26950594 -58745160 + MIR SINE MIR 47 262 0 369 331 38 45 chr15 26951003 26951160 -58744594 + MIR3 SINE MIR 5 160 -48 1638 204 29 125 chr15 26951687 26952281 -58743473 + MLT1F1 LTR MaLR 3 564 -3 244 155 17 17 chr15 26952283 26952341 -58743413 + CT-rich Low_complexity Low_complexity 1 58 0 342 326 10 0 chr15 26952455 26952553 -58743201 - MIR SINE MIR -70 138 40 193 281 88 0 chr15 26953439 26953496 -58742258 + L2 LINE L2 3236 3297 -16 1672 139 0 4 chr15 26953769 26954020 -58741734 - AluSg SINE Alu -60 250 1 7337 162 24 29 chr15 26954117 26955562 -58740192 - L1P5 LINE L1 -363 5788 3 261 203 0 43 chr15 26955565 26955634 -58740120 - L1 LINE L1 -1659 4487 4422 24 0 0 0 chr15 26955654 26955678 -58740076 + AT_rich Low_complexity Low_complexity 1 24 0 5992 167 16 13 chr15 26955682 26957903 -58737851 - L1PB1 LINE L1 0 6151 3926 * 6736 172 57 6 chr15 26957902 26958718 -58737036 + L1PBa LINE L1 1814 2587 -4275 282 56 0 0 chr15 26958718 26958754 -58737000 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6736 172 57 6 chr15 26958754 26960429 -58735325 + L1PBa LINE L1 2587 4429 -2433 * 8426 227 39 18 chr15 26960422 26962609 -58733145 - L1 LINE L1 -1707 4439 2201 2075 134 0 3 chr15 26962609 26962908 -58732846 + AluSx SINE Alu 1 298 -14 8426 227 39 18 chr15 26962908 26962996 -58732758 - L1 LINE L1 -3945 2201 2116 1994 114 0 4 chr15 26962998 26963270 -58732484 + AluSg SINE Alu 1 271 -39 663 211 50 96 chr15 26965093 26965311 -58730443 - MER63A DNA MER1_type -2 208 1 728 116 21 2 chr15 26967221 26967455 -58728299 + AluSx SINE Alu 3 292 -20 23 0 0 0 chr15 26971104 26971127 -58724627 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr15 26971158 26971186 -58724568 + AT_rich Low_complexity Low_complexity 1 28 0 233 350 136 27 chr15 26971773 26972030 -58723724 + L2 LINE L2 2577 2861 -453 198 351 46 46 chr15 26972152 26972303 -58723451 + MER5A DNA MER1_type 2 152 -37 356 311 33 25 chr15 26972180 26972302 -58723452 - MER5B DNA MER1_type -16 162 40 1974 119 10 29 chr15 26973030 26973340 -58722414 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr15 26974103 26974125 -58721629 + AT_rich Low_complexity Low_complexity 1 22 0 265 298 228 44 chr15 26974830 26974900 -58720854 - L2 LINE L2 -467 2847 2791 2117 122 10 0 chr15 26974900 26975195 -58720559 - AluSx SINE Alu -14 298 1 265 298 228 44 chr15 26975195 26975352 -58720402 - L2 LINE L2 -523 2791 2578 452 269 0 0 chr15 26975647 26975792 -58719962 + L1P LINE L1 2257 2401 -3745 1894 132 4 0 chr15 26975792 26976122 -58719632 + AluSg SINE Alu 1 331 0 674 229 71 75 chr15 26976944 26977197 -58718557 - MLT1J LTR MaLR -255 256 5 245 303 66 26 chr15 26978052 26978128 -58717626 + L2 LINE L2 3188 3266 -6 511 252 175 0 chr15 26978836 26978979 -58716775 + L3 LINE CR1 1150 1317 -260 1591 147 51 15 chr15 26979219 26979492 -58716262 + MER1B DNA MER1_type 1 283 -56 38 51 0 0 chr15 26980152 26980211 -58715543 + AT_rich Low_complexity Low_complexity 1 59 0 1398 148 0 0 chr15 26980299 26980509 -58715245 + AluSx SINE Alu 4 213 -99 214 178 0 0 chr15 26980791 26980836 -58714918 + T-rich Low_complexity Low_complexity 1 45 0 4347 176 38 14 chr15 26981306 26981368 -58714386 - L1MC2 LINE L1 -6 6338 6279 2440 67 0 3 chr15 26981368 26981666 -58714088 + AluY SINE Alu 1 297 -14 4347 176 38 14 chr15 26981666 26982508 -58713246 - L1MC2 LINE L1 -65 6279 5413 1953 118 33 0 chr15 26982517 26982823 -58712931 - L1PA16 LINE L1 -9 6157 5842 754 130 72 0 chr15 26982823 26983000 -58712754 - L1MC2 LINE L1 -743 5403 5224 2330 118 0 0 chr15 26984191 26984504 -58711250 - AluSq SINE Alu 0 313 1 25 0 0 0 chr15 26985416 26985441 -58710313 + AT_rich Low_complexity Low_complexity 1 25 0 216 324 149 22 chr15 26986013 26986368 -58709386 + L2 LINE L2 1313 1712 -1602 305 301 61 66 chr15 26986374 26986570 -58709184 - L2 LINE L2 -461 2853 2659 950 258 20 0 chr15 26986982 26987226 -58708528 - LTR53 LTR ERVL 0 519 271 460 222 0 9 chr15 26989111 26989219 -58706535 + LTR7 LTR ERV1 342 448 -2 3098 123 22 6 chr15 26989222 26989732 -58706022 + HERVH LTR ERV1 2 519 -7194 1452 113 0 28 chr15 26990991 26991203 -58704551 + AluSx SINE Alu 1 206 -106 1716 148 7 24 chr15 26991447 26991738 -58704016 + AluJo SINE Alu 3 288 -24 260 169 88 0 chr15 26991777 26991855 -58703899 + MIR SINE MIR 58 145 -63 508 180 129 61 chr15 26992794 26992963 -58702791 - MIR SINE MIR -62 146 16 342 0 0 0 chr15 26993144 26993182 -58702572 + (CA)n Simple_repeat Simple_repeat 2 39 0 3704 59 0 0 chr15 26993738 26994215 -58701539 - L1P LINE L1 -1009 5137 4661 477 141 0 0 chr15 26994645 26994723 -58701031 + AluJ/FLAM SINE Alu 1 78 -234 392 167 0 0 chr15 26994724 26994784 -58700970 + AluJ/F(R)AM SINE Alu 147 206 -105 1620 124 0 17 chr15 26994884 26995117 -58700637 - AluSq SINE Alu -84 229 1 2165 186 30 5 chr15 26995118 26995548 -58700206 - L1MC/D LINE L1 -422 5820 5380 246 146 0 18 chr15 26995548 26995603 -58700151 + MER113 DNA MER1_type? 94 147 -374 1545 174 16 0 chr15 26995605 26995858 -58699896 + AluJb SINE Alu 37 293 -19 885 130 6 43 chr15 26995881 26996043 -58699711 + MER5A DNA MER1_type 2 157 -32 945 114 0 0 chr15 26996267 26996398 -58699356 + THE1C LTR MaLR 245 375 0 5870 107 28 94 chr15 26996417 26997443 -58698311 + THE1C-int LTR MaLR 21 979 -601 3495 177 48 5 chr15 26997998 26999252 -58696502 + L1MC1 LINE L1 4516 5826 -507 4541 127 4 29 chr15 26999252 27000048 -58695706 + L1P LINE L1 1 776 -5370 310 125 0 0 chr15 27002335 27002383 -58693371 + L2 LINE L2 3266 3313 0 22 0 0 0 chr15 27002630 27002652 -58693102 + AT_rich Low_complexity Low_complexity 1 22 0 1797 211 43 31 chr15 27003080 27003592 -58692162 - Charlie1b DNA MER1_type -5 518 1 283 331 39 8 chr15 27003604 27003734 -58692020 + MIR3 SINE MIR 72 205 -3 378 308 135 44 chr15 27004035 27004591 -58691163 + L2 LINE L2 2091 2764 -550 414 342 125 44 chr15 27006112 27006767 -58688987 - L2 LINE L2 -8 3264 2550 929 192 22 6 chr15 27006983 27007165 -58688589 + MER5A DNA MER1_type 2 186 -3 274 191 22 114 chr15 27007258 27007365 -58688389 + MIR SINE MIR 46 145 -63 194 344 146 45 chr15 27007465 27008520 -58687234 - L2 LINE L2 -917 2397 1236 877 245 14 19 chr15 27008679 27008891 -58686863 + MIR SINE MIR 2 212 -50 31 0 0 0 chr15 27008897 27008928 -58686826 + AT_rich Low_complexity Low_complexity 1 31 0 365 200 0 0 chr15 27008945 27009005 -58686749 + MIR SINE MIR 199 258 -4 436 272 11 83 chr15 27009672 27009852 -58685902 - MIR SINE MIR -31 231 65 41 36 0 0 chr15 27010087 27010142 -58685612 + AT_rich Low_complexity Low_complexity 1 55 0 327 254 67 85 chr15 27010170 27010394 -58685360 + L1MC4a LINE L1 5827 6046 -1762 569 303 126 60 chr15 27010540 27011368 -58684386 + L1MEd LINE L1 6 887 -5232 749 254 24 91 chr15 27012504 27012843 -58682911 + MER46C DNA MER2_type 23 338 0 405 255 35 35 chr15 27013247 27013388 -58682366 - MIR SINE MIR -3 259 119 304 283 22 66 chr15 27013589 27013815 -58681939 - HAL1 LINE L1 -10 2497 2282 1640 253 115 43 chr15 27014245 27015086 -58680668 - HAL1 LINE L1 -633 1874 973 252 207 17 0 chr15 27015501 27015559 -58680195 - MER96 DNA MER1_type? 0 175 117 537 232 27 0 chr15 27015573 27015685 -58680069 - L2 LINE L2 0 3313 3199 647 338 88 21 chr15 27015898 27016229 -58679525 - L2 LINE L2 -3 3269 2917 5007 236 35 14 chr15 27016238 27017875 -58677879 + L1PA15-16 LINE L1 2737 4410 -2439 4971 116 12 5 chr15 27017875 27018626 -58677128 + L1PA16 LINE L1 5410 6165 -1 239 218 0 0 chr15 27018986 27019041 -58676713 + GA-rich Low_complexity Low_complexity 1 55 0 3939 139 8 3 chr15 27019619 27020254 -58675500 + L1PB3 LINE L1 5514 6151 -3 22 0 0 0 chr15 27020255 27020277 -58675477 + AT_rich Low_complexity Low_complexity 1 22 0 1678 78 0 5 chr15 27020693 27020911 -58674843 + AluY SINE Alu 94 310 -1 2734 255 38 25 chr15 27020911 27021920 -58673834 + L1M4c LINE L1 852 1876 -4508 3384 234 158 11 chr15 27022014 27023504 -58672250 + L1M4c LINE L1 2092 3811 -2571 494 255 53 33 chr15 27023691 27024008 -58671746 - L1M1 LINE L1 -4073 3033 2702 * 8528 138 14 14 chr15 27024000 27026580 -58669174 - L1MA2 LINE L1 0 6304 3727 2140 241 104 20 chr15 27026561 27028445 -58667309 - L1M1 LINE L1 -4238 2869 1022 * 1122 162 88 81 chr15 27028465 27028761 -58666993 - L1M1 LINE L1 -6732 298 1 719 171 79 7 chr15 27028791 27028943 -58666811 - L1MC4 LINE L1 -1422 6620 6458 261 163 0 0 chr15 27031090 27031139 -58664615 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 374 310 35 9 chr15 27031498 27031614 -58664140 + L2 LINE L2 3195 3313 0 29 28 0 0 chr15 27031670 27031706 -58664048 + AT_rich Low_complexity Low_complexity 1 36 0 563 175 44 18 chr15 27032035 27032149 -58663605 + L2 LINE L2 3193 3309 -4 180 0 0 0 chr15 27032923 27032943 -58662811 + (A)n Simple_repeat Simple_repeat 1 20 0 258 301 13 77 chr15 27034302 27034458 -58661296 + L2 LINE L2 2915 3060 -212 3116 24 3 0 chr15 27034597 27034966 -58660788 - L1PA4 LINE L1 -4 6151 5782 748 102 7 29 chr15 27035431 27035568 -58660186 + L1MA3 LINE L1 5922 6055 -250 720 180 0 16 chr15 27035568 27035696 -58660058 + FLAM_C SINE Alu 1 126 -17 189 0 0 0 chr15 27035709 27035730 -58660024 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1690 123 69 18 chr15 27035734 27036011 -58659743 + AluSx SINE Alu 1 291 -21 1407 145 15 15 chr15 27036020 27036282 -58659472 + L1MA3 LINE L1 6044 6305 0 561 258 31 0 chr15 27036898 27037026 -58658728 - MER45A DNA AcHobo -38 140 9 3358 110 6 18 chr15 27037029 27037530 -58658224 + LOR1a LTR ERV1 3 497 0 2415 98 86 15 chr15 27037845 27038241 -58657513 + MSTA LTR MaLR 5 428 0 412 232 39 88 chr15 27038367 27038548 -58657206 - L1M4 LINE L1 -2424 3722 3551 637 227 46 31 chr15 27038615 27038828 -58656926 + MLT1B LTR MaLR 1 205 -169 497 126 0 23 chr15 27038848 27038935 -58656819 + MLT1D LTR MaLR 419 503 -2 960 255 0 0 chr15 27039017 27039213 -58656541 + MLT1B LTR MaLR 195 390 0 679 223 66 12 chr15 27039301 27039557 -58656197 - L1M4 LINE L1 -2764 3382 3113 469 305 57 46 chr15 27039590 27040149 -58655605 + HAL1 LINE L1 747 1671 -836 962 195 104 133 chr15 27040149 27040280 -58655474 - MLT1D LTR MaLR -2 503 370 270 0 0 0 chr15 27040280 27040310 -58655444 + (TG)n Simple_repeat Simple_repeat 1 30 0 962 195 104 133 chr15 27040310 27040696 -58655058 - MLT1D LTR MaLR -135 370 1 469 305 57 46 chr15 27040696 27040798 -58654956 + HAL1 LINE L1 1671 1770 -737 873 260 106 54 chr15 27040847 27041367 -58654387 + HAL1 LINE L1 1888 2434 -73 406 259 99 15 chr15 27041429 27041560 -58654194 + MLT1J2 LTR MaLR 67 208 -242 227 191 0 0 chr15 27041682 27041724 -58654030 + MLT1J2 LTR MaLR 386 427 -23 953 242 53 23 chr15 27041741 27042005 -58653749 + MLT1G LTR MaLR 10 281 -309 329 171 77 3 chr15 27042072 27042166 -58653588 + MLT1G3 LTR MaLR 470 549 0 450 208 45 93 chr15 27042336 27042605 -58653149 + MER112 DNA MER1_type 1 256 0 724 204 8 0 chr15 27045933 27046065 -58649689 - FLAM_C SINE Alu 0 133 1 1499 198 61 71 chr15 27048037 27048485 -58647269 - LTR10B LTR ERV1 0 547 16 5786 128 78 20 chr15 27049961 27051044 -58644710 - Tigger3b DNA MER2_type -1 1230 85 1877 65 38 0 chr15 27051349 27051610 -58644144 - L1PA7 LINE L1 0 6154 5884 737 242 58 42 chr15 27052518 27052823 -58642931 + L1ME1 LINE L1 5821 6276 -36 3638 106 19 8 chr15 27053215 27053732 -58642022 + MER1A DNA MER1_type 1 523 -6 21 36 0 0 chr15 27053802 27053830 -58641924 + AT_rich Low_complexity Low_complexity 1 28 0 1915 134 20 7 chr15 27053985 27054291 -58641463 + AluSx SINE Alu 1 310 -2 31 44 0 0 chr15 27054597 27054642 -58641112 + AT_rich Low_complexity Low_complexity 1 45 0 249 98 0 0 chr15 27055536 27055577 -58640177 + (TA)n Simple_repeat Simple_repeat 1 41 0 1693 176 17 3 chr15 27055847 27056137 -58639617 - AluJo SINE Alu -18 294 1 23 78 0 0 chr15 27056152 27056203 -58639551 + AT_rich Low_complexity Low_complexity 1 51 0 337 203 16 0 chr15 27056272 27056336 -58639418 - L2 LINE L2 0 3272 3208 344 276 148 28 chr15 27056440 27056690 -58639064 - L1ME LINE L1 -413 5708 5429 26 64 0 0 chr15 27056815 27056862 -58638892 + AT_rich Low_complexity Low_complexity 1 47 0 419 202 123 136 chr15 27057338 27057540 -58638214 - L1MC4 LINE L1 -3 8039 7839 2074 125 7 0 chr15 27057540 27057837 -58637917 - AluSx SINE Alu -13 299 1 419 202 123 136 chr15 27057837 27057877 -58637877 - L1MC4 LINE L1 -203 7839 7800 1936 112 20 10 chr15 27058000 27058296 -58637458 - AluSx SINE Alu -13 299 1 1052 234 40 99 chr15 27058320 27058825 -58636929 - L1MD2 LINE L1 0 6162 5688 683 241 96 35 chr15 27058831 27059113 -58636641 - L1MC4 LINE L1 -219 7823 7525 1726 224 99 73 chr15 27059285 27060035 -58635719 - L1MD3 LINE L1 -447 7548 6687 323 260 42 21 chr15 27061612 27061708 -58634046 - MIR SINE MIR -49 213 116 1739 185 0 3 chr15 27061782 27062074 -58633680 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr15 27062438 27062459 -58633295 + AT_rich Low_complexity Low_complexity 1 21 0 1221 265 138 11 chr15 27062745 27063391 -58632363 - L1ME3 LINE L1 -290 6266 5549 246 245 22 39 chr15 27063617 27063779 -58631975 - L1ME3 LINE L1 -3928 2612 2452 429 291 85 33 chr15 27064176 27064220 -58631534 - L1MCa LINE L1 -894 1893 1853 201 39 0 0 chr15 27064220 27064246 -58631508 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 429 291 85 33 chr15 27064246 27064634 -58631120 - L1MCa LINE L1 -934 1853 1253 1602 168 10 48 chr15 27065134 27065443 -58630311 + AluJo SINE Alu 1 297 -15 258 105 0 0 chr15 27065791 27065829 -58629925 + (T)n Simple_repeat Simple_repeat 1 38 0 508 269 249 10 chr15 27066576 27066769 -58628985 + MIR SINE MIR 14 252 -10 633 250 42 12 chr15 27066787 27066955 -58628799 + MLT1K LTR MaLR 301 473 -115 1284 267 111 34 chr15 27066970 27067446 -58628308 + LTR33 LTR ERVL 1 513 -8 465 243 101 14 chr15 27067527 27067675 -58628079 - MER103 DNA DNA 0 166 6 368 268 11 20 chr15 27067732 27067844 -58627910 - MIR SINE MIR -70 138 38 206 118 0 0 chr15 27068366 27068400 -58627354 + (T)n Simple_repeat Simple_repeat 1 34 0 319 320 146 22 chr15 27068548 27068726 -58627028 + MLT1H LTR MaLR 240 439 -110 371 314 0 40 chr15 27069421 27069596 -58626158 - MLT2E LTR ERVL 0 628 461 347 230 93 7 chr15 27070319 27070458 -58625296 + HAL1 LINE L1 975 1125 -1382 1789 143 11 11 chr15 27070817 27071104 -58624650 - AluSx SINE Alu -25 287 1 1133 245 212 27 chr15 27071411 27071929 -58623825 + HAL1 LINE L1 1125 1738 -769 2273 113 0 3 chr15 27071958 27072267 -58623487 + AluSx SINE Alu 1 308 -4 1527 246 54 56 chr15 27072301 27073023 -58622731 - L2 LINE L2 0 3313 2494 336 301 64 35 chr15 27073026 27073199 -58622555 + LTR16A LTR ERVL 1 178 -272 402 275 107 0 chr15 27073270 27073401 -58622353 + LTR16A LTR ERVL 301 445 -5 270 234 47 0 chr15 27073427 27073491 -58622263 + HERV16 LTR ERVL 74 140 -4856 1466 343 68 48 chr15 27073726 27075087 -58620667 + ERVL LTR ERVL 3935 5323 -441 368 353 65 0 chr15 27075275 27075428 -58620326 + LTR16A LTR ERVL 1 163 -287 266 256 23 12 chr15 27075511 27075597 -58620157 + MLT1H LTR MaLR 467 553 -2 1329 231 72 24 chr15 27075637 27076013 -58619741 + MLT1D LTR MaLR 69 462 -43 284 272 98 47 chr15 27076106 27076360 -58619394 + MLT1D-int LTR MaLR 322 588 -783 524 254 69 61 chr15 27076808 27077109 -58618645 + MLT1H LTR MaLR 1 335 -260 279 189 0 19 chr15 27077111 27077164 -58618590 - MLT1A2 LTR MaLR 0 374 323 1433 208 22 56 chr15 27077268 27077624 -58618130 - MLT1A2 LTR MaLR 0 374 31 520 249 161 19 chr15 27077638 27077843 -58617911 + MLT1H LTR MaLR 322 555 0 25 65 0 0 chr15 27078879 27078925 -58616829 + AT_rich Low_complexity Low_complexity 1 46 0 441 236 6 28 chr15 27079269 27079451 -58616303 + GA-rich Low_complexity Low_complexity 2 179 0 3048 239 67 14 chr15 27080083 27081112 -58614642 - L1M4 LINE L1 -2090 4056 2973 22 0 0 0 chr15 27081386 27081408 -58614346 + AT_rich Low_complexity Low_complexity 1 22 0 2007 139 14 0 chr15 27081414 27081709 -58614045 + AluSx SINE Alu 6 304 -8 23 54 0 0 chr15 27082224 27082261 -58613493 + AT_rich Low_complexity Low_complexity 1 37 0 270 224 0 0 chr15 27082590 27082639 -58613115 - L2 LINE L2 0 3313 3265 4223 228 85 47 chr15 27082672 27082700 -58613054 - L1M4 LINE L1 -1780 4366 4341 2400 158 30 2 chr15 27082700 27083106 -58612648 - MER47B DNA MER2_type 0 418 2 4223 228 85 47 chr15 27083106 27084777 -58610977 - L1M4 LINE L1 -1805 4341 2603 21 0 0 0 chr15 27085074 27085095 -58610659 + AT_rich Low_complexity Low_complexity 1 21 0 387 353 101 55 chr15 27086499 27086935 -58608819 + L2 LINE L2 2807 3262 -10 956 196 48 0 chr15 27087989 27088198 -58607556 + L1ME3A LINE L1 5944 6162 -8 259 292 76 69 chr15 27088533 27088595 -58607159 - MIR3 SINE MIR -28 180 120 4696 80 26 0 chr15 27088595 27089236 -58606518 - L1PA13 LINE L1 -3 6160 5503 259 292 76 69 chr15 27089236 27089317 -58606437 - MIR3 SINE MIR -88 120 36 597 144 12 138 chr15 27089677 27089837 -58605917 + MER97a DNA MER1_type? 1 140 -754 682 219 124 39 chr15 27091345 27091578 -58604176 + L1ME2 LINE L1 5902 6154 -10 196 29 0 57 chr15 27093522 27093557 -58602197 + (TTTTTA)n Simple_repeat Simple_repeat 2 34 0 282 284 126 21 chr15 27093882 27093977 -58601777 + MIR3 SINE MIR 83 187 -21 1262 283 88 54 chr15 27094042 27094785 -58600969 + HAL1 LINE L1 1664 2431 -76 21 36 0 0 chr15 27094904 27094932 -58600822 + AT_rich Low_complexity Low_complexity 1 28 0 452 121 141 30 chr15 27095231 27095330 -58600424 + MER53 DNA DNA 2 111 -78 195 244 0 0 chr15 27099617 27099658 -58596096 - L2 LINE L2 -217 3055 3015 1665 164 29 25 chr15 27099660 27099960 -58595794 - AluJb SINE Alu 0 301 1 639 333 81 55 chr15 27100517 27101060 -58594694 - L2 LINE L2 -490 2824 2268 297 290 8 69 chr15 27102338 27102469 -58593285 + L2 LINE L2 2325 2447 -867 858 267 27 35 chr15 27102500 27102758 -58592996 + MIR SINE MIR 2 257 -5 6297 136 13 7 chr15 27103541 27105022 -58590732 + L1MA4A LINE L1 4802 6292 -11 537 293 136 5 chr15 27107245 27107443 -58588311 + MIR SINE MIR 2 225 -37 249 139 0 0 chr15 27107456 27107499 -58588255 + (CA)n Simple_repeat Simple_repeat 2 44 0 382 195 39 0 chr15 27107499 27107576 -58588178 - MER82 DNA MER2_type -4 649 570 594 283 85 6 chr15 27107602 27107779 -58587975 + MIR3 SINE MIR 8 198 -10 479 257 11 57 chr15 27108372 27108531 -58587223 - LTR33A LTR ERVL -24 499 347 1114 180 6 80 chr15 27108531 27108799 -58586955 + MER33 DNA MER1_type 1 239 -2346 2102 129 3 0 chr15 27108799 27109094 -58586660 - AluSx SINE Alu -16 296 1 1114 180 6 80 chr15 27109094 27109175 -58586579 + MER33 DNA MER1_type 239 324 0 479 257 11 57 chr15 27109175 27109190 -58586564 - LTR33A LTR ERVL -176 347 333 219 359 134 47 chr15 27109780 27110100 -58585654 - L2 LINE L2 -6 3266 2919 336 257 177 0 chr15 27110319 27110432 -58585322 + L2 LINE L2 3140 3272 0 415 304 0 0 chr15 27111145 27111260 -58584494 + MIR SINE MIR 140 254 -8 2334 74 0 0 chr15 27112280 27112603 -58583151 + AluY SINE Alu 1 323 0 2984 262 71 38 chr15 27113039 27113566 -58582188 - L2 LINE L2 -149 3164 2656 2235 117 7 0 chr15 27113566 27113865 -58581889 - AluSx SINE Alu -11 301 1 2984 262 71 38 chr15 27113865 27114533 -58581221 - L2 LINE L2 -657 2656 1925 219 323 55 51 chr15 27115260 27115477 -58580277 - L2 LINE L2 -967 2347 2130 504 157 0 0 chr15 27116795 27116878 -58578876 - FLAM_A SINE Alu -13 129 47 880 297 135 14 chr15 27118123 27118470 -58577284 - MLT1J2 LTR MaLR 0 450 62 6520 122 56 0 chr15 27119028 27120090 -58575664 + Tigger3b DNA MER2_type 21 1141 -90 857 136 21 0 chr15 27120097 27120237 -58575517 + Tigger3b DNA MER2_type 277 419 -812 598 175 31 0 chr15 27120237 27120334 -58575420 + Tigger3b DNA MER2_type 1132 1231 0 2925 75 90 2 chr15 27121022 27121434 -58574320 - LTR7 LTR ERV1 -2 448 1 7704 94 26 4 chr15 27121434 27123158 -58572596 - HERVH LTR ERV1 0 7713 5769 1236 126 16 0 chr15 27123144 27123334 -58572420 - HERVH LTR ERV1 -3033 4680 4488 * 3338 117 4 6 chr15 27123336 27123839 -58571915 - HERVH LTR ERV1 -3720 3993 3492 970 133 7 0 chr15 27123829 27123979 -58571775 - HERVH LTR ERV1 -4423 3290 3140 * 15694 104 16 26 chr15 27123958 27126847 -58568907 - HERVH LTR ERV1 -4718 2995 1 2939 73 90 2 chr15 27126849 27127261 -58568493 - LTR7 LTR ERV1 -2 448 1 836 280 156 24 chr15 27127529 27128339 -58567415 - L1ME LINE L1 -393 6731 5751 327 104 0 0 chr15 27128339 27128387 -58567367 + (TA)n Simple_repeat Simple_repeat 1 48 0 836 280 156 24 chr15 27128387 27128595 -58567159 - L1ME LINE L1 -1373 5751 5572 5096 117 10 9 chr15 27130156 27131474 -58564280 - L1PA14 LINE L1 -190 5971 4655 2332 247 57 29 chr15 27131463 27133489 -58562265 - L1ME LINE L1 -4070 3038 1285 * 269 213 16 16 chr15 27133489 27133550 -58562204 + L2 LINE L2 2701 2761 -553 288 130 0 0 chr15 27133550 27133596 -58562158 + (TC)n Simple_repeat Simple_repeat 1 46 0 501 343 68 13 chr15 27133676 27133912 -58561842 + L2 LINE L2 2853 3101 -212 413 236 27 27 chr15 27134509 27134619 -58561135 + L2 LINE L2 3163 3272 0 199 268 0 0 chr15 27135247 27135288 -58560466 - MIR3 SINE MIR -10 198 158 251 338 58 7 chr15 27135413 27135552 -58560202 - MIR3 SINE MIR -56 152 7 2058 82 28 0 chr15 27136189 27136507 -58559247 - L1PA7 LINE L1 -752 5394 5068 1336 42 0 0 chr15 27136505 27136672 -58559082 + L1PA7 LINE L1 5395 5561 -593 * 2084 60 11 0 chr15 27136672 27136939 -58558815 + L1PA7 LINE L1 5884 6154 0 1047 267 166 52 chr15 27136952 27137506 -58558248 - MLT1E1 LTR MaLR -36 618 1 216 337 84 11 chr15 27137520 27137615 -58558139 - MIR SINE MIR -152 110 9 295 362 63 30 chr15 27138022 27138290 -58557464 - L2 LINE L2 -565 2749 2473 595 274 98 0 chr15 27138516 27138669 -58557085 + MER5A DNA MER1_type 22 189 0 212 281 8 15 chr15 27139321 27139388 -58556366 + MIR SINE MIR 102 168 -57 238 255 0 0 chr15 27141092 27141143 -58554611 - MIR3 SINE MIR -7 201 151 2256 192 31 41 chr15 27141170 27141681 -58554073 - MER74A LTR ERVL 0 558 53 2422 65 3 0 chr15 27141796 27142103 -58553651 - AluY SINE Alu -3 308 1 818 162 33 17 chr15 27143932 27144146 -58551608 + MLT1D LTR MaLR 1 168 -337 2958 206 109 16 chr15 27144459 27145393 -58550361 - Charlie1 DNA MER1_type -4 2757 1737 353 276 73 0 chr15 27145739 27145862 -58549892 + MIR SINE MIR 131 262 0 258 32 0 0 chr15 27146270 27146301 -58549453 + (CA)n Simple_repeat Simple_repeat 2 32 0 352 333 42 50 chr15 27146872 27147112 -58548642 + MIR SINE MIR 20 257 -5 1725 269 22 50 chr15 27147137 27147833 -58547921 + L1M2a LINE L1 49 724 -6485 4478 223 29 12 chr15 27148142 27149400 -58546354 + L1M2a LINE L1 1750 3049 -4160 2496 101 31 3 chr15 27149486 27149872 -58545882 + L1PA11 LINE L1 5693 6089 -85 1925 148 40 28 chr15 27149876 27150228 -58545526 + THE1B LTR MaLR 7 362 -2 536 56 14 0 chr15 27150228 27150299 -58545455 + L1PA10 LINE L1 6081 6152 -16 214 254 0 17 chr15 27150468 27150527 -58545227 + L2 LINE L2 3161 3218 -95 809 234 61 17 chr15 27150890 27151301 -58544453 + L1M1 LINE L1 3163 3602 -3963 5534 195 68 7 chr15 27151372 27152256 -58543498 + L1M1 LINE L1 3620 4632 -2933 1498 199 3 62 chr15 27152256 27152577 -58543177 + AluJo SINE Alu 1 302 -10 5534 195 68 7 chr15 27152577 27153188 -58542566 + L1M1 LINE L1 4632 5205 -2360 413 303 17 52 chr15 27153194 27153484 -58542270 + L1PA16 LINE L1 2 281 -7300 1563 148 31 34 chr15 27154240 27154565 -58541189 - THE1C LTR MaLR 0 375 52 1926 157 77 32 chr15 27154565 27155004 -58540750 - LTR2B LTR ERV1 0 490 32 382 136 0 0 chr15 27155014 27155080 -58540674 - THE1C LTR MaLR -362 66 1 9378 118 46 13 chr15 27155080 27156303 -58539451 - THE1C-int LTR MaLR 0 1580 296 850 135 142 176 chr15 27156303 27156769 -58538985 - LTR7 LTR ERV1 0 450 1 9378 118 46 13 chr15 27156769 27157075 -58538679 - THE1C-int LTR MaLR -1284 296 1 1834 168 21 24 chr15 27157075 27157451 -58538303 - THE1C LTR MaLR 0 375 1 13846 213 16 17 chr15 27158011 27160490 -58535264 + L1PA16 LINE L1 2319 4800 -2804 216 0 0 0 chr15 27160490 27160514 -58535240 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 13846 213 16 17 chr15 27160514 27163292 -58532462 + L1PA16 LINE L1 4800 7604 0 2696 150 28 4 chr15 27163292 27163793 -58531961 + L1MA6 LINE L1 5769 6288 -12 8839 193 18 5 chr15 27163851 27165542 -58530212 + L1MA3 LINE L1 13 1725 -5840 1089 84 19 47 chr15 27165539 27165752 -58530002 + L1MA3 LINE L1 3366 3572 -3993 * 12934 163 23 9 chr15 27165757 27168421 -58527333 + L1MA3 LINE L1 4027 6758 -966 2270 128 0 0 chr15 27168421 27168726 -58527028 - AluSq SINE Alu -8 305 1 12934 163 23 9 chr15 27168726 27169366 -58526388 + L1MA3 LINE L1 6758 7388 -336 216 313 188 0 chr15 27169460 27169556 -58526198 + L2 LINE L2 3180 3293 -20 190 310 56 0 chr15 27169597 27169668 -58526086 - MIR SINE MIR -3 259 185 1878 276 106 30 chr15 27169685 27170717 -58525037 - L2 LINE L2 0 3313 2187 697 178 8 16 chr15 27170806 27170935 -58524819 - FLAM_C SINE Alu -5 128 1 23 0 0 0 chr15 27170940 27170963 -58524791 + AT_rich Low_complexity Low_complexity 1 23 0 697 321 58 18 chr15 27171021 27171295 -58524459 - L2 LINE L2 -1108 2206 1922 395 331 24 0 chr15 27171326 27171453 -58524301 - MIR SINE MIR -113 149 20 478 328 53 12 chr15 27171467 27171638 -58524116 + MER91A DNA MER1_type 14 191 -5 368 308 19 0 chr15 27171697 27171801 -58523953 + MER5B DNA MER1_type 2 107 -71 297 268 63 31 chr15 27172586 27172713 -58523041 - MIR3 SINE MIR -47 161 31 211 325 171 0 chr15 27172781 27172904 -58522850 - MER5B DNA MER1_type -30 148 5 2641 218 19 55 chr15 27178964 27179707 -58516047 + L1MB7 LINE L1 310 1025 -5814 3547 204 28 10 chr15 27179707 27181076 -58514678 + L1MB7 LINE L1 5525 6963 -16 236 358 97 55 chr15 27181101 27181431 -58514323 - L2 LINE L2 -15 3257 2914 44 75 0 0 chr15 27182028 27182121 -58513633 + AT_rich Low_complexity Low_complexity 1 93 0 957 280 90 38 chr15 27183145 27184323 -58511431 + L1M4 LINE L1 1306 2781 -4341 10707 202 45 46 chr15 27184523 27184769 -58510985 - L1MB1 LINE L1 -115 6257 6012 345 47 0 0 chr15 27184769 27184812 -58510942 + (TG)n Simple_repeat Simple_repeat 1 43 0 189 74 0 0 chr15 27184813 27184840 -58510914 + (TA)n Simple_repeat Simple_repeat 2 28 0 10707 202 45 46 chr15 27184840 27185765 -58509989 - L1MB1 LINE L1 -360 6012 5088 2590 174 65 6 chr15 27185765 27186254 -58509500 + MLT2B1 LTR ERVL 1 518 -2 10707 202 45 46 chr15 27186254 27186482 -58509272 - L1MB1 LINE L1 -1284 5088 4861 2731 148 18 12 chr15 27186482 27186982 -58508772 - L1PA15 LINE L1 -9 6156 5654 10707 202 45 46 chr15 27186982 27189251 -58506503 - L1MB1 LINE L1 -1511 4861 2594 1431 234 62 31 chr15 27189248 27189798 -58505956 - L1MB1 LINE L1 -4523 1748 1157 * 529 291 136 48 chr15 27189814 27190109 -58505645 - L1MB1 LINE L1 -5920 361 1 438 279 84 13 chr15 27192390 27192544 -58503210 + MIR SINE MIR 86 250 -12 201 226 0 0 chr15 27192940 27192993 -58502761 + (CA)n Simple_repeat Simple_repeat 2 54 0 375 296 122 15 chr15 27193050 27193246 -58502508 + MIR SINE MIR 15 231 -31 1020 80 0 0 chr15 27193250 27193387 -58502367 - AluY SINE Alu 0 311 175 25 31 0 0 chr15 27193424 27193456 -58502298 + AT_rich Low_complexity Low_complexity 1 32 0 329 275 72 0 chr15 27193590 27193728 -58502026 + L1ME4a LINE L1 5971 6118 -3 345 109 0 0 chr15 27193890 27193945 -58501809 + (TC)n Simple_repeat Simple_repeat 2 56 0 665 176 7 0 chr15 27194359 27194501 -58501253 - Charlie5 DNA MER1_type 0 2624 2482 435 167 0 0 chr15 27194512 27194578 -58501176 - Charlie5 DNA MER1_type -2545 67 2 216 130 43 0 chr15 27194622 27194691 -58501063 + (TA)n Simple_repeat Simple_repeat 2 73 0 236 320 17 61 chr15 27194691 27194872 -58500882 - L1ME LINE L1 -383 5787 5615 557 212 143 44 chr15 27195037 27195240 -58500514 + MIR SINE MIR 40 262 0 234 302 138 31 chr15 27195349 27195508 -58500246 - MIR3 SINE MIR 0 208 33 558 251 49 34 chr15 27195908 27196171 -58499583 - L1ME LINE L1 -5245 825 559 2236 113 3 0 chr15 27196193 27196486 -58499268 - AluSx SINE Alu -18 294 1 524 221 30 23 chr15 27196507 27196638 -58499116 + MIR SINE MIR 87 218 -44 1501 191 48 0 chr15 27196820 27197092 -58498662 - AluJb SINE Alu -21 291 7 1189 158 0 0 chr15 27197436 27197607 -58498147 + AluSg/x SINE Alu 109 279 -33 369 0 0 0 chr15 27197607 27197648 -58498106 + (CA)n Simple_repeat Simple_repeat 1 41 0 809 288 122 35 chr15 27197649 27198281 -58497473 + L2 LINE L2 2531 3222 -91 805 295 95 16 chr15 27198281 27198711 -58497043 - LTR16B LTR ERVL 0 464 1 809 288 122 35 chr15 27198711 27198812 -58496942 + L2 LINE L2 3222 3313 0 245 284 110 29 chr15 27198806 27198928 -58496826 - MIR3 SINE MIR -109 99 4 * 2207 100 10 0 chr15 27199246 27199535 -58496219 - AluSq SINE Alu -21 292 1 188 333 0 0 chr15 27200411 27200459 -58495295 + MER5B DNA MER1_type 54 101 -77 2310 164 11 34 chr15 27200482 27200927 -58494827 - L1MC1 LINE L1 -85 6248 5814 243 164 0 0 chr15 27200927 27200988 -58494766 + T-rich Low_complexity Low_complexity 1 61 0 42535 35 24 0 chr15 27201033 27207042 -58488712 - L1PA2 LINE L1 0 6155 1 6499 199 44 8 chr15 27207042 27209098 -58486656 - L1MC1 LINE L1 -507 5826 3695 2230 251 42 27 chr15 27209116 27209781 -58485973 - L1ME1 LINE L1 -4 6231 5557 * 5131 236 60 36 chr15 27209767 27212463 -58483291 - L1ME1 LINE L1 -2339 3876 1246 186 43 0 0 chr15 27212463 27212486 -58483268 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 3738 41 0 13 chr15 27212496 27212960 -58482794 - L1PA4 LINE L1 0 6155 5698 5131 236 60 36 chr15 27212960 27213490 -58482264 - L1ME1 LINE L1 -4977 1238 615 528 215 8 23 chr15 27213494 27213624 -58482130 - L1ME1 LINE L1 -5842 554 427 427 117 0 0 chr15 27214285 27214345 -58481409 + FLAM_A SINE Alu 41 100 -42 1157 301 100 19 chr15 27214367 27214935 -58480819 + HAL1 LINE L1 403 1016 -1491 546 254 119 53 chr15 27215527 27215778 -58479976 + HAL1 LINE L1 1012 1245 -1262 1864 165 3 10 chr15 27215778 27216081 -58479673 - AluJo SINE Alu -9 303 3 546 254 119 53 chr15 27216081 27216360 -58479394 + HAL1 LINE L1 1245 1577 -930 281 232 24 61 chr15 27216420 27216502 -58479252 + HAL1 LINE L1 1695 1773 -734 231 294 0 0 chr15 27218150 27218218 -58477536 + (TTCGGG)n Simple_repeat Simple_repeat 6 73 0 7719 14 8 0 chr15 27219381 27220370 -58475384 - L1PA3 LINE L1 0 6155 5163 22 0 0 0 chr15 27221639 27221661 -58474093 + AT_rich Low_complexity Low_complexity 1 22 0 732 270 87 44 chr15 27221891 27222372 -58473382 + HAL1 LINE L1 2006 2507 0 1756 244 53 62 chr15 27222515 27223063 -58472691 - MLT1H LTR MaLR 0 549 7 368 217 42 83 chr15 27223521 27223665 -58472089 + L1MD2 LINE L1 6006 6142 -24 2472 49 3 7 chr15 27225058 27225365 -58470389 - AluY SINE Alu -2 309 4 450 282 67 7 chr15 27225629 27225778 -58469976 + MER69A DNA AcHobo 20 177 0 2244 137 39 20 chr15 27225912 27226269 -58469485 - THE1B LTR MaLR 0 364 1 10496 88 93 1 chr15 27226269 27227715 -58468039 - THE1B-int LTR MaLR 0 1580 1 2010 142 60 31 chr15 27227715 27228067 -58467687 - THE1B LTR MaLR 0 364 3 2016 140 7 0 chr15 27228468 27228754 -58467000 - AluSx SINE Alu -24 288 1 356 261 217 25 chr15 27229170 27229373 -58466381 + MIR SINE MIR 20 261 -1 372 315 37 0 chr15 27229964 27230072 -58465682 - MIR3 SINE MIR -21 187 76 22 35 0 0 chr15 27230344 27230373 -58465381 + AT_rich Low_complexity Low_complexity 1 29 0 1039 165 63 44 chr15 27230846 27231052 -58464702 - MER63A DNA MER1_type 0 210 1 914 280 27 27 chr15 27231619 27231948 -58463806 - MARNA DNA Mariner -149 437 109 332 225 27 128 chr15 27231867 27232054 -58463700 + MARNA DNA Mariner 396 563 -23 * 415 319 118 0 chr15 27232074 27232209 -58463545 - MIR SINE MIR -11 251 101 356 288 8 96 chr15 27232777 27232902 -58462852 + MER5B DNA MER1_type 65 178 0 466 254 0 9 chr15 27233189 27233299 -58462455 + MIR SINE MIR 63 171 -91 303 233 92 36 chr15 27233485 27233733 -58462021 + L1ME LINE L1 5539 5804 -317 236 239 0 30 chr15 27233937 27234004 -58461750 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 381 262 159 58 chr15 27234083 27234598 -58461156 - L1MC4a LINE L1 -1926 5882 5316 288 325 20 33 chr15 27234845 27235050 -58460704 - MIR SINE MIR -6 256 3 336 238 0 0 chr15 27235072 27235156 -58460598 + CT-rich Low_complexity Low_complexity 2 85 0 615 235 108 36 chr15 27236430 27236596 -58459158 + MER45A DNA AcHobo 1 178 0 324 339 28 0 chr15 27237821 27237957 -58457797 + MIR SINE MIR 5 151 -62 673 205 0 16 chr15 27238143 27238270 -58457484 + MER5B DNA MER1_type 44 168 -10 184 328 0 31 chr15 27238362 27238426 -58457328 + L2 LINE L2 3242 3303 -10 535 244 71 41 chr15 27239054 27239251 -58456503 - MIR SINE MIR -40 222 20 395 211 0 0 chr15 27239450 27239526 -58456228 + MER5A DNA MER1_type 34 109 -80 431 270 27 40 chr15 27239617 27239765 -58455989 - MER5A DNA MER1_type -1 188 43 229 217 155 12 chr15 27240237 27240352 -58455402 - MIR SINE MIR -47 215 31 311 335 168 0 chr15 27240647 27240814 -58454940 + MIR SINE MIR 51 245 -17 383 208 20 0 chr15 27240927 27241009 -58454745 + L1 LINE L1 3060 3147 -2999 4646 132 63 4 chr15 27241012 27241831 -58453923 + L1PA16 LINE L1 5290 6157 -9 407 277 61 0 chr15 27242186 27242334 -58453420 - L1MC4 LINE L1 -525 7517 7361 3499 249 67 67 chr15 27242340 27243849 -58451905 - L1MC4 LINE L1 -11 8031 6524 252 0 0 0 chr15 27243849 27243877 -58451877 + (TG)n Simple_repeat Simple_repeat 1 28 0 3499 249 67 67 chr15 27243877 27243955 -58451799 - L1MC4 LINE L1 -1518 6524 6448 3173 113 48 4 chr15 27243955 27244457 -58451297 - L1PB1 LINE L1 -3 6148 5625 3499 249 67 67 chr15 27244457 27245537 -58450217 - L1MC4 LINE L1 -1594 6448 5263 198 0 0 0 chr15 27245610 27245632 -58450122 + (T)n Simple_repeat Simple_repeat 1 22 0 661 180 66 38 chr15 27245839 27246022 -58449732 + MER53 DNA DNA 1 188 -1 185 200 0 0 chr15 27246524 27246559 -58449195 - MIR SINE MIR -114 148 114 388 291 16 59 chr15 27247014 27247195 -58448559 - MIR SINE MIR -63 145 19 210 37 0 0 chr15 27247371 27247398 -58448356 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1702 151 25 50 chr15 27247953 27248311 -58447443 + MLT1A1 LTR MaLR 16 364 -1 3400 128 7 14 chr15 27248334 27248671 -58447083 - Tigger1 DNA MER2_type 0 2418 2080 378 0 0 0 chr15 27248671 27248713 -58447041 + (TTA)n Simple_repeat Simple_repeat 3 44 0 2313 57 3 14 chr15 27248713 27249010 -58446744 - L1PA6 LINE L1 -18 6136 5843 3400 128 7 14 chr15 27249010 27249227 -58446527 - Tigger1 DNA MER2_type -336 2082 1867 862 160 0 0 chr15 27249358 27249502 -58446252 - Tigger1 DNA MER2_type -963 1455 1312 * 1145 148 0 54 chr15 27249501 27249724 -58446030 - Tigger1 DNA MER2_type -2206 212 2 1108 249 84 53 chr15 27250187 27250604 -58445150 + MLT1E LTR MaLR 1 430 -163 1239 191 4 4 chr15 27250746 27250981 -58444773 - MLT1A1 LTR MaLR -121 244 10 289 226 169 24 chr15 27250991 27251115 -58444639 + MLT1E LTR MaLR 480 621 -3 476 276 102 123 chr15 27251445 27251916 -58443838 - L2 LINE L2 -2 3270 2810 686 279 97 13 chr15 27253115 27253352 -58442402 - MIR SINE MIR 0 262 6 26 50 0 0 chr15 27253413 27253453 -58442301 + AT_rich Low_complexity Low_complexity 1 40 0 210 313 16 0 chr15 27254230 27254294 -58441460 - MIR SINE MIR -1 261 197 1087 274 4 0 chr15 27254313 27254558 -58441196 - MIR SINE MIR -12 250 5 221 346 77 13 chr15 27254564 27254720 -58441034 - MIR SINE MIR -77 185 20 2213 180 11 28 chr15 27254737 27255203 -58440551 + LTR22A LTR ERVK 1 458 0 2114 98 65 0 chr15 27255205 27255530 -58440224 + HERVK22 LTR ERVK 3 348 -6489 24549 43 0 0 chr15 27255530 27259340 -58436414 - L1PA4 LINE L1 0 6155 2346 9491 104 6 1 chr15 27259488 27260912 -58434842 - L1PA4 LINE L1 -4715 1431 1 35850 98 6 5 chr15 27260915 27266028 -58429726 + HERVK22 LTR ERVK 341 5458 -1379 1412 188 3 24 chr15 27266030 27266323 -58429431 + LTR22A LTR ERVK 172 458 0 424 269 96 12 chr15 27267361 27267528 -58428226 - MIR3 SINE MIR -10 198 18 504 287 72 12 chr15 27267598 27267765 -58427989 - MER5B DNA MER1_type 0 178 2 333 181 0 14 chr15 27267778 27267850 -58427904 + L1MC1 LINE L1 6254 6324 -9 2201 105 3 3 chr15 27267853 27268147 -58427607 + AluSg SINE Alu 3 296 -14 464 288 111 10 chr15 27268550 27268748 -58427006 - MIR SINE MIR -13 249 32 220 265 188 34 chr15 27268831 27268994 -58426760 - MIR SINE MIR -55 207 14 308 331 84 14 chr15 27269990 27270132 -58425622 - L2 LINE L2 0 3272 3121 183 167 0 0 chr15 27270896 27270938 -58424816 + (TA)n Simple_repeat Simple_repeat 1 42 0 25 31 0 0 chr15 27271013 27271045 -58424709 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr15 27271062 27271084 -58424670 + AT_rich Low_complexity Low_complexity 1 22 0 3599 187 5 17 chr15 27271437 27272244 -58423510 + L1 LINE L1 4126 4922 -1224 360 158 26 0 chr15 27272250 27272326 -58423428 - L1P LINE L1 -967 5179 5102 5537 111 41 3 chr15 27272345 27273551 -58422203 + L1PA16 LINE L1 4927 6166 0 793 223 104 23 chr15 27273587 27273807 -58421947 + MIR SINE MIR 6 243 -19 195 235 143 31 chr15 27273798 27273896 -58421858 - MIR SINE MIR -76 186 78 * 618 341 59 7 chr15 27274434 27274707 -58421047 + L3 LINE CR1 1237 1523 -54 1788 107 97 13 chr15 27275549 27275857 -58419897 + MSTB LTR MaLR 1 334 -92 421 234 13 45 chr15 27275924 27276078 -58419676 + MER104 DNA Tc2 32 180 0 43 35 0 0 chr15 27276419 27276476 -58419278 + AT_rich Low_complexity Low_complexity 1 57 0 225 0 0 0 chr15 27278668 27278693 -58417061 + (TC)n Simple_repeat Simple_repeat 2 26 0 365 340 27 0 chr15 27278793 27278940 -58416814 - MIR3 SINE MIR -29 179 29 209 180 0 33 chr15 27279119 27279180 -58416574 + CT-rich Low_complexity Low_complexity 1 59 0 186 306 28 14 chr15 27279930 27280002 -58415752 - MIR SINE MIR -9 253 181 414 238 53 116 chr15 27280009 27280370 -58415384 + LTR37B LTR ERV1 8 345 -123 463 252 49 0 chr15 27280473 27280596 -58415158 - MIR SINE MIR -77 185 57 23 54 0 0 chr15 27280779 27280816 -58414938 + AT_rich Low_complexity Low_complexity 1 37 0 417 177 0 0 chr15 27282972 27283051 -58412703 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 1761 156 10 17 chr15 27284007 27284302 -58411452 - AluY SINE Alu -18 293 1 233 277 116 18 chr15 27286188 27286300 -58409454 - L3 LINE CR1 -2 1575 1453 463 250 44 15 chr15 27286324 27286460 -58409294 - MIR SINE MIR -10 252 113 4107 188 40 23 chr15 27286460 27287299 -58408455 + MER21B LTR ERV1 1 854 -9 357 231 48 29 chr15 27287313 27287417 -58408337 - MIR SINE MIR -144 118 13 264 279 39 31 chr15 27289559 27289688 -58406066 + HAL1 LINE L1 1217 1346 -1161 246 282 99 28 chr15 27289826 27290078 -58405676 + HAL1b LINE L1 450 719 -629 1171 126 73 15 chr15 27290471 27290677 -58405077 - AluSp SINE Alu -14 299 82 1681 160 45 10 chr15 27291059 27291347 -58404407 - AluSx SINE Alu -14 298 1 261 284 0 14 chr15 27292002 27292076 -58403678 + L1MC4a LINE L1 5555 5627 -2181 568 273 99 21 chr15 27292134 27292416 -58403338 + L1MC4a LINE L1 5619 5922 -1886 21 71 0 0 chr15 27292569 27292611 -58403143 + AT_rich Low_complexity Low_complexity 1 42 0 410 255 130 37 chr15 27293214 27293375 -58402379 + MIR SINE MIR 22 197 -65 442 252 152 7 chr15 27293498 27293649 -58402105 + MIR SINE MIR 30 202 -60 270 291 39 48 chr15 27294324 27294427 -58401327 + MIR SINE MIR 21 122 -86 563 237 0 0 chr15 27294464 27294582 -58401172 + MLT1F1 LTR MaLR 8 125 -442 2711 150 27 45 chr15 27294582 27295183 -58400571 + L1MD3 LINE L1 7404 7993 -2 22 0 0 0 chr15 27295243 27295265 -58400489 + AT_rich Low_complexity Low_complexity 1 22 0 826 285 49 19 chr15 27295326 27295695 -58400059 + L1ME3A LINE L1 5548 5927 -194 613 252 183 62 chr15 27296191 27296611 -58399143 - L2 LINE L2 0 3313 2843 247 250 0 0 chr15 27297216 27297268 -58398486 + (CA)n Simple_repeat Simple_repeat 1 52 0 529 252 17 0 chr15 27297695 27297814 -58397940 + FLAM_A SINE Alu 6 126 -16 417 256 88 50 chr15 27298795 27298955 -58396799 - MIR SINE MIR -65 197 32 307 176 118 0 chr15 27299379 27299447 -58396307 - MER5A DNA MER1_type -77 112 37 494 291 79 31 chr15 27299726 27299953 -58395801 + MIR SINE MIR 16 253 -9 25 31 0 0 chr15 27299963 27299995 -58395759 + AT_rich Low_complexity Low_complexity 1 32 0 358 340 80 6 chr15 27300020 27300182 -58395572 + MIR3 SINE MIR 33 206 -2 365 180 45 27 chr15 27301186 27301297 -58394457 + MER103 DNA DNA 10 122 -44 312 354 80 19 chr15 27301686 27301898 -58393856 + MIR SINE MIR 14 238 -24 1789 157 107 25 chr15 27303126 27303177 -58392577 + MER63B DNA MER1_type 1 46 -1016 2324 78 0 0 chr15 27303177 27303486 -58392268 + AluY SINE Alu 1 309 0 1789 157 107 25 chr15 27303486 27303834 -58391920 + MER63B DNA MER1_type 46 434 -2 606 276 75 22 chr15 27304718 27305037 -58390717 + L1ME3A LINE L1 5627 5962 -208 250 246 125 69 chr15 27305058 27305290 -58390464 + L1ME3A LINE L1 5926 6170 0 739 237 0 0 chr15 27305342 27305481 -58390273 + MER5B DNA MER1_type 38 176 -2 650 251 87 6 chr15 27305847 27306030 -58389724 - MIR SINE MIR 0 262 65 726 33 0 0 chr15 27306033 27306123 -58389631 + L1MA1 LINE L1 6204 6293 -9 26 0 0 0 chr15 27306123 27306149 -58389605 + AT_rich Low_complexity Low_complexity 1 26 0 873 167 151 21 chr15 27306185 27306424 -58389330 + Charlie1b DNA MER1_type 45 314 -209 1954 151 6 10 chr15 27306666 27306977 -58388777 + AluSx SINE Alu 1 310 -2 1423 139 204 0 chr15 27307066 27307346 -58388408 + MER1B DNA MER1_type 1 337 0 790 264 136 45 chr15 27307378 27307878 -58387876 + L2 LINE L2 2734 3306 -7 267 298 97 48 chr15 27307937 27308165 -58387589 + L2 LINE L2 2283 2521 -793 399 248 186 0 chr15 27308580 27308725 -58387029 + MIR SINE MIR 79 250 -12 2322 101 3 0 chr15 27309157 27309455 -58386299 - AluSq SINE Alu -14 299 1 331 251 150 12 chr15 27311526 27311693 -58384061 + MIR3 SINE MIR 11 200 -8 264 347 32 16 chr15 27312426 27312550 -58383204 + L2 LINE L2 3141 3266 -6 2082 134 0 0 chr15 27313662 27313972 -58381782 - AluSx SINE Alu 0 310 1 2123 121 3 7 chr15 27314180 27314477 -58381277 + AluSc SINE Alu 1 296 -13 318 333 95 32 chr15 27315151 27315340 -58380414 + L1MEd LINE L1 316 516 -5603 2528 147 28 2 chr15 27315721 27316158 -58379596 + L1MB2 LINE L1 5719 6166 -5 380 259 45 0 chr15 27316171 27316283 -58379471 + MIR SINE MIR 146 262 0 199 267 0 0 chr15 27316599 27316644 -58379110 + L2 LINE L2 3268 3312 -1 460 171 0 12 chr15 27317871 27317953 -58377801 + MER5A DNA MER1_type 109 189 0 24 32 0 0 chr15 27319179 27319210 -58376544 + AT_rich Low_complexity Low_complexity 1 31 0 210 37 0 0 chr15 27319801 27319828 -58375926 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 305 282 145 0 chr15 27320182 27320313 -58375441 - MIR SINE MIR -56 206 57 340 317 139 57 chr15 27321598 27322024 -58373730 + L2 LINE L2 2780 3272 0 22 0 0 0 chr15 27324294 27324316 -58371438 + AT_rich Low_complexity Low_complexity 1 22 0 2304 94 3 3 chr15 27326405 27326703 -58369051 + AluSp SINE Alu 1 298 -15 243 250 15 29 chr15 27327360 27327428 -58368326 + Charlie8 DNA MER1_type 26 92 -2325 301 211 73 49 chr15 27328549 27328672 -58367082 - L1ME4a LINE L1 -2 6119 5994 216 158 0 0 chr15 27328743 27328781 -58366973 + (CA)n Simple_repeat Simple_repeat 2 39 0 797 283 66 30 chr15 27328796 27329203 -58366551 - L1ME4a LINE L1 -203 5918 5497 227 217 33 0 chr15 27330325 27330385 -58365369 + GA-rich Low_complexity Low_complexity 2 63 0 295 283 58 58 chr15 27330416 27330589 -58365165 - MIR SINE MIR -70 192 20 624 285 60 10 chr15 27330759 27330959 -58364795 + MIR SINE MIR 20 229 -33 9223 194 35 56 chr15 27331053 27336057 -58359697 + L1MA4A LINE L1 1 4832 -2376 369 132 0 0 chr15 27336084 27336137 -58359617 - AluJb SINE Alu -194 108 56 1172 225 0 13 chr15 27336137 27336373 -58359381 + AluJb SINE Alu 37 269 -43 8071 189 49 8 chr15 27336409 27338847 -58356907 + L1MA4A LINE L1 4823 7354 -11 22 35 0 0 chr15 27338887 27338916 -58356838 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr15 27338969 27338993 -58356761 + AT_rich Low_complexity Low_complexity 1 24 0 325 311 46 33 chr15 27339707 27339858 -58355896 - MER5A DNA MER1_type 0 189 37 221 143 0 20 chr15 27340122 27340171 -58355583 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 252 207 17 0 chr15 27340868 27340926 -58354828 - MER96 DNA MER1_type? 0 175 117 537 232 27 0 chr15 27340940 27341052 -58354702 - L2 LINE L2 0 3313 3199 743 325 88 15 chr15 27341265 27341594 -58354160 - L2 LINE L2 -3 3269 2917 984 190 70 16 chr15 27341603 27341946 -58353808 + L1PA15-16 LINE L1 2737 3111 -3738 5703 200 34 44 chr15 27342049 27342746 -58353008 + L1MB1 LINE L1 3748 4450 -1696 4727 168 2 22 chr15 27342746 27343554 -58352200 - MER54B LTR ERVL 0 793 2 5703 200 34 44 chr15 27343554 27343587 -58352167 + L1MB1 LINE L1 4450 4482 -1664 2227 93 3 29 chr15 27343587 27343897 -58351857 + AluSc SINE Alu 1 302 -7 5703 200 34 44 chr15 27343897 27344595 -58351159 + L1MB1 LINE L1 4482 5164 -982 2101 101 3 44 chr15 27344595 27344893 -58350861 + AluSg SINE Alu 3 288 -22 5703 200 34 44 chr15 27344893 27344992 -58350762 + L1MB1 LINE L1 5164 5262 -884 24585 148 34 16 chr15 27344992 27347028 -58348726 - L1P3 LINE L1 -746 5715 3717 216 86 0 0 chr15 27347028 27347063 -58348691 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 24585 148 34 16 chr15 27347063 27350569 -58345185 - L1P3 LINE L1 -2744 3717 4 1218 94 11 6 chr15 27350570 27350749 -58345005 + MLT2A2 LTR ERVL 295 453 0 5125 164 25 4 chr15 27350749 27351780 -58343974 + L1PA16 LINE L1 5116 6165 -1 3163 186 35 3 chr15 27351807 27352436 -58343318 + L1MB1 LINE L1 5482 6130 -38 33 56 0 0 chr15 27352809 27352863 -58342891 + AT_rich Low_complexity Low_complexity 1 54 0 264 286 158 18 chr15 27352943 27352991 -58342763 + HAL1b LINE L1 513 553 -795 1702 171 10 17 chr15 27352991 27353283 -58342471 - AluJo SINE Alu -22 290 1 264 286 158 18 chr15 27353283 27353507 -58342247 + HAL1b LINE L1 553 823 -525 312 264 11 11 chr15 27354144 27354231 -58341523 + L1MC4a LINE L1 2729 2815 -3331 205 73 24 49 chr15 27354326 27354367 -58341387 + (TAAAAA)n Simple_repeat Simple_repeat 2 41 0 238 291 52 17 chr15 27354378 27354608 -58341146 + L1MC4a LINE L1 2953 3190 -2956 683 319 76 53 chr15 27354842 27356058 -58339696 + L1MC4a LINE L1 3366 4608 -1538 2180 106 17 0 chr15 27356166 27356468 -58339286 - AluSx SINE Alu -5 307 1 254 328 45 8 chr15 27356586 27356720 -58339034 + L1MC4a LINE L1 4882 5020 -1126 1412 260 68 36 chr15 27356910 27356992 -58338762 + L1MC4a LINE L1 5260 5338 -2470 2498 54 0 3 chr15 27356992 27357289 -58338465 + AluY SINE Alu 1 296 -15 1412 260 68 36 chr15 27357289 27357852 -58337902 + L1MC4a LINE L1 5338 5926 -1882 229 251 210 27 chr15 27358690 27359024 -58336730 - L1ME4a LINE L1 -2 6119 5725 6085 77 37 6 chr15 27359091 27360061 -58335693 + L1PA11 LINE L1 5176 6173 -1 283 294 0 33 chr15 27360934 27361026 -58334728 - L1ME4a LINE L1 -415 5706 5618 27350 122 9 72 chr15 27361957 27367013 -58328741 + L1P LINE L1 3 4741 -1405 7057 59 1 2 chr15 27367124 27368637 -58327117 + L1PA7 LINE L1 4640 6153 -1 198 283 0 0 chr15 27368740 27368786 -58326968 - L2 LINE L2 -3 3310 3265 21 0 0 0 chr15 27368852 27368873 -58326881 + AT_rich Low_complexity Low_complexity 1 21 0 898 177 39 11 chr15 27369471 27369703 -58326051 - Charlie3 DNA MER1_type -4 2706 144 21 71 0 0 chr15 27369972 27370014 -58325740 + AT_rich Low_complexity Low_complexity 1 42 0 268 314 7 29 chr15 27370051 27370191 -58325563 - L1ME4a LINE L1 -480 5641 5505 643 279 88 89 chr15 27370241 27370428 -58325326 - L1ME4a LINE L1 -747 5399 5213 2109 121 0 22 chr15 27370428 27370742 -58325012 - AluSq SINE Alu -6 307 1 822 143 32 0 chr15 27370750 27370876 -58324878 - FLAM_A SINE Alu -3 130 1 643 279 88 89 chr15 27370876 27371532 -58324222 - L1ME4a LINE L1 -940 5206 4548 1670 139 8 4 chr15 27371708 27371975 -58323779 + MER2 DNA MER2_type 75 342 -3 328 247 25 12 chr15 27372308 27372389 -58323365 + MIR3 SINE MIR 119 200 -8 441 304 6 0 chr15 27372768 27372887 -58322867 - MIR SINE MIR -61 147 24 185 267 33 17 chr15 27374041 27374101 -58321653 + MIR SINE MIR 158 218 -44 412 265 7 102 chr15 27374298 27374445 -58321309 - MIR3 SINE MIR -31 177 45 432 55 0 0 chr15 27375208 27375263 -58320491 + (CA)n Simple_repeat Simple_repeat 2 56 0 233 75 25 0 chr15 27375284 27375324 -58320430 + (TG)n Simple_repeat Simple_repeat 1 41 0 797 234 68 19 chr15 27375503 27375708 -58320046 - MIR SINE MIR -3 259 45 389 305 0 65 chr15 27376429 27376583 -58319171 - MIR SINE MIR -35 227 84 947 220 6 0 chr15 27377144 27377321 -58318433 - MER45A DNA AcHobo 0 178 1 691 142 33 33 chr15 27378911 27379031 -58316723 + 5S rRNA rRNA 1 120 -1 1087 288 107 87 chr15 27379207 27380396 -58315358 + L2 LINE L2 1764 2976 -338 359 308 8 62 chr15 27380390 27380520 -58315234 + L2 LINE L2 3137 3259 -13 * 511 302 68 10 chr15 27380551 27380743 -58315011 - MIR SINE MIR -47 215 13 991 290 53 31 chr15 27380784 27381294 -58314460 - LTR33 LTR ERVL 0 521 1 2469 75 0 0 chr15 27381569 27381864 -58313890 - AluY SINE Alu -16 295 1 1142 249 72 5 chr15 27381905 27382307 -58313447 - MER69 DNA AcHobo -81 2445 2017 387 243 10 39 chr15 27382308 27382411 -58313343 - MER69 DNA AcHobo -425 801 702 337 286 48 32 chr15 27382682 27382808 -58312946 - MIR SINE MIR -61 201 74 29 28 0 0 chr15 27382808 27382844 -58312910 + AT_rich Low_complexity Low_complexity 1 36 0 241 214 0 0 chr15 27385288 27385343 -58310411 + polypurine Low_complexity Low_complexity 1 55 0 521 340 70 0 chr15 27388892 27389092 -58306662 + MIR SINE MIR 28 241 -21 418 323 62 0 chr15 27389178 27389308 -58306446 + L2 LINE L2 3133 3270 -2 749 212 76 68 chr15 27391298 27391534 -58304220 - L2 LINE L2 0 3313 3076 307 200 29 14 chr15 27391707 27391777 -58303977 + MLT1J1 LTR MaLR 70 140 -306 425 216 52 9 chr15 27391869 27391985 -58303769 + MLT1I LTR MaLR 277 397 -12 236 333 20 30 chr15 27393047 27393146 -58302608 - L2 LINE L2 -16 3297 3200 180 355 25 25 chr15 27394922 27395043 -58300711 - L3 LINE CR1 -364 1213 1093 6282 49 1 4 chr15 27395104 27395801 -58299953 - L1P1 LINE L1 -498 5657 4964 2303 85 0 7 chr15 27395801 27396106 -58299648 + AluY SINE Alu 1 303 -8 6282 49 1 4 chr15 27396106 27396540 -58299214 - L1P1 LINE L1 -1191 4964 4530 2794 39 3 0 chr15 27396641 27397004 -58298750 - L1P LINE L1 -944 5202 4839 4273 22 0 0 chr15 27397004 27397494 -58298260 + L1PA3 LINE L1 5660 6152 -3 4765 175 12 20 chr15 27397608 27398793 -58296961 - L1MD1 LINE L1 -52 6190 5010 935 258 62 25 chr15 27398771 27399283 -58296471 - L1MD1 LINE L1 -2642 3504 2974 * 677 220 119 37 chr15 27399366 27399584 -58296170 + MIR SINE MIR 17 252 -10 264 352 6 11 chr15 27400588 27400764 -58294990 + GA-rich Low_complexity Low_complexity 2 176 0 363 44 0 0 chr15 27401219 27401264 -58294490 + (TG)n Simple_repeat Simple_repeat 1 45 0 909 250 23 14 chr15 27402515 27402731 -58293023 - MIR SINE MIR 0 262 45 201 188 72 87 chr15 27403247 27403316 -58292438 + L2 LINE L2 3246 3313 0 259 216 159 0 chr15 27403397 27403485 -58292269 - MIR SINE MIR -71 191 90 278 269 39 77 chr15 27403567 27403697 -58292057 - MIR3 SINE MIR -76 132 8 22 35 0 0 chr15 27403938 27403967 -58291787 + AT_rich Low_complexity Low_complexity 1 29 0 212 143 0 0 chr15 27404315 27404350 -58291404 + (GA)n Simple_repeat Simple_repeat 2 36 0 189 0 0 0 chr15 27404441 27404462 -58291292 + (A)n Simple_repeat Simple_repeat 1 21 0 33 0 0 0 chr15 27405045 27405078 -58290676 + AT_rich Low_complexity Low_complexity 1 33 0 640 286 83 44 chr15 27405327 27405579 -58290175 + MIR SINE MIR 1 262 0 236 208 21 0 chr15 27406392 27406440 -58289314 + MER3 DNA MER1_type 42 90 -119 * 407 155 119 0 chr15 27406403 27406487 -58289267 - MER3 DNA MER1_type -6 203 110 184 302 121 43 chr15 27407258 27407374 -58288380 - L2 LINE L2 0 3272 3148 221 330 0 32 chr15 27407384 27407478 -58288276 - MIR3 SINE MIR -15 193 103 318 304 40 8 chr15 27409017 27409142 -58286612 - MIR3 SINE MIR -79 129 1 392 277 0 0 chr15 27412278 27412361 -58283393 + L2 LINE L2 3188 3270 -2 220 266 31 0 chr15 27412444 27412508 -58283246 - MIR SINE MIR -1 261 196 704 144 52 6 chr15 27412513 27412687 -58283067 - MER53 DNA DNA -5 184 3 329 200 0 70 chr15 27412693 27412793 -58282961 - MIR SINE MIR -60 202 110 417 195 49 65 chr15 27413237 27413360 -58282394 - MIR SINE MIR -141 121 1 1169 271 43 29 chr15 27414287 27414708 -58281046 - LTR16A LTR ERVL -6 444 18 545 175 21 0 chr15 27414801 27414898 -58280856 - FLAM_C SINE Alu -32 111 13 2237 133 0 0 chr15 27415842 27416151 -58279603 - AluSx SINE Alu -3 309 1 1110 259 218 19 chr15 27417457 27417832 -58277922 + L2 LINE L2 1774 2073 -1241 1551 192 31 3 chr15 27417832 27418118 -58277636 - AluJb SINE Alu -18 294 1 1981 95 7 22 chr15 27418127 27418401 -58277353 - AluSq SINE Alu -9 304 35 1110 259 218 19 chr15 27418401 27418656 -58277098 + L2 LINE L2 2079 2542 -772 362 231 27 41 chr15 27418678 27418825 -58276929 + L1MC5 LINE L1 7641 7785 -176 468 0 0 0 chr15 27418982 27419034 -58276720 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 1138 294 137 16 chr15 27419034 27419719 -58276035 + L2 LINE L2 2544 3309 -4 300 53 0 0 chr15 27421643 27421681 -58274073 + (A)n Simple_repeat Simple_repeat 1 38 0 22 35 0 0 chr15 27421878 27421907 -58273847 + AT_rich Low_complexity Low_complexity 1 29 0 474 303 37 120 chr15 27423138 27423727 -58272027 + L2 LINE L2 2735 3271 -1 497 287 81 0 chr15 27424172 27424346 -58271408 - MER5A DNA MER1_type -1 188 1 280 333 141 15 chr15 27424503 27424638 -58271116 - MIR3 SINE MIR -54 154 3 342 344 39 8 chr15 27425103 27425231 -58270523 + L2 LINE L2 3124 3255 -17 297 51 0 0 chr15 27425232 27425271 -58270483 + (TGGA)n Simple_repeat Simple_repeat 2 40 0 27 49 0 0 chr15 27425870 27425911 -58269843 + AT_rich Low_complexity Low_complexity 1 41 0 224 286 0 0 chr15 27426954 27427010 -58268744 + L2 LINE L2 3216 3271 -1 982 224 46 124 chr15 27427063 27427154 -58268600 - MLT1C LTR MaLR -2 465 368 2330 83 3 26 chr15 27427154 27427467 -58268287 + AluSc SINE Alu 1 306 -3 982 224 46 124 chr15 27427467 27427809 -58267945 - MLT1C LTR MaLR -99 368 66 217 231 0 19 chr15 27427904 27427956 -58267798 + GA-rich Low_complexity Low_complexity 1 51 0 4521 49 16 0 chr15 27430240 27430795 -58264959 - L1PA8 LINE L1 -13 6159 5596 402 260 191 9 chr15 27430820 27431155 -58264599 + L1ME4a LINE L1 5726 6121 0 1842 152 3 10 chr15 27431763 27432073 -58263681 - L1PA16 LINE L1 -10 6156 5849 2097 123 3 0 chr15 27432181 27432506 -58263248 - L1PA16 LINE L1 -312 5854 5529 2096 140 7 0 chr15 27432538 27432846 -58262908 - AluSq SINE Alu -3 310 1 623 251 55 6 chr15 27432921 27433084 -58262670 - MER5B DNA MER1_type -1 177 7 396 268 170 0 chr15 27433801 27433954 -58261800 + MIR SINE MIR 73 251 -11 287 227 159 0 chr15 27434001 27434089 -58261665 - MIR SINE MIR -73 135 34 723 265 27 5 chr15 27434439 27434662 -58261092 - LTR16A1 LTR ERVL -14 443 216 189 329 51 0 chr15 27435020 27435099 -58260655 - L2 LINE L2 -43 3229 3147 420 339 52 22 chr15 27435733 27435963 -58259791 - MIR SINE MIR -20 242 6 835 231 189 14 chr15 27438465 27438815 -58256939 + LTR33 LTR ERVL 106 516 -5 410 342 91 13 chr15 27439193 27439424 -58256330 - MIR SINE MIR -8 254 6 506 301 63 76 chr15 27439434 27439976 -58255778 - MARNA DNA Mariner -11 575 41 974 135 21 0 chr15 27439979 27440120 -58255634 + AluY SINE Alu 1 144 -167 873 238 56 10 chr15 27440685 27440987 -58254767 + L1MEc LINE L1 2070 2385 -4011 270 303 13 0 chr15 27440987 27441063 -58254691 - L2 LINE L2 -1018 2296 2220 437 129 0 0 chr15 27441256 27441318 -58254436 + Tigger2 DNA MER2_type 1 62 -2656 * 2500 130 46 28 chr15 27441316 27441571 -58254183 + Tigger2 DNA MER2_type 2273 2541 -177 2802 16 0 0 chr15 27441571 27441880 -58253874 + AluYb8 SINE Alu 1 309 -9 2500 130 46 28 chr15 27441880 27442061 -58253693 + Tigger2 DNA MER2_type 2541 2717 -1 372 324 69 14 chr15 27442190 27442335 -58253419 + MIR3 SINE MIR 50 202 -6 297 330 0 0 chr15 27442960 27443048 -58252706 - MIR SINE MIR -18 244 157 220 295 205 18 chr15 27443185 27443297 -58252457 - MIR3 SINE MIR -62 146 14 498 331 39 17 chr15 27443533 27443711 -58252043 + MIR3 SINE MIR 16 197 -11 443 310 90 28 chr15 27443883 27444138 -58251616 + MLT1K LTR MaLR 13 283 -305 369 149 0 0 chr15 27444156 27444223 -58251531 + (TC)n Simple_repeat Simple_repeat 2 68 0 226 0 59 0 chr15 27444294 27444328 -58251426 + (CAAAAA)n Simple_repeat Simple_repeat 3 38 0 604 264 58 19 chr15 27445706 27445914 -58249840 - L3 LINE CR1 -25 1552 1337 490 226 17 0 chr15 27445931 27446046 -58249708 - L1PA16 LINE L1 -5 6161 6045 472 211 10 0 chr15 27446046 27446150 -58249604 + LTR60 LTR ERV1 2 106 -480 1310 146 51 152 chr15 27446237 27446327 -58249427 + LTR60 LTR ERV1 147 245 -341 2183 120 7 0 chr15 27446327 27446627 -58249127 + AluSx SINE Alu 1 302 -10 1310 146 51 152 chr15 27446627 27446969 -58248785 + LTR60 LTR ERV1 245 535 -51 1118 173 30 94 chr15 27446826 27447155 -58248599 + TAR1 Satellite telomeric 4 311 -1800 * 4415 107 8 19 chr15 27447157 27447874 -58247880 - L1PA16 LINE L1 -117 6049 5341 1679 311 92 61 chr15 27447899 27448920 -58246834 - L3 LINE CR1 -266 1311 256 2723 106 0 11 chr15 27448920 27449299 -58246455 + THE1C LTR MaLR 1 375 0 1679 311 92 61 chr15 27449299 27449320 -58246434 - L3 LINE CR1 -1321 256 237 509 320 58 79 chr15 27450606 27450987 -58244767 - L2 LINE L2 -373 2941 2569 883 207 58 81 chr15 27451007 27451268 -58244486 - MIR SINE MIR 0 262 8 213 326 56 34 chr15 27451841 27451930 -58243824 + MIR SINE MIR 116 206 -56 377 248 228 0 chr15 27452016 27452161 -58243593 - MLT1I LTR MaLR 0 409 232 240 279 16 0 chr15 27452268 27452329 -58243425 - MLT1I LTR MaLR -347 62 1 2469 77 0 3 chr15 27452403 27452715 -58243039 + AluY SINE Alu 1 311 0 336 299 142 35 chr15 27452981 27453235 -58242519 + MLT1K LTR MaLR 289 569 -19 198 103 0 0 chr15 27453993 27454022 -58241732 + (CCA)n Simple_repeat Simple_repeat 1 29 0 198 0 0 0 chr15 27454109 27454131 -58241623 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 231 266 27 131 chr15 27454131 27454353 -58241401 - L2 LINE L2 -13 3300 3102 182 205 0 77 chr15 27454371 27454410 -58241344 + L2 LINE L2 3031 3066 -206 252 86 0 0 chr15 27454583 27454618 -58241136 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 198 0 0 0 chr15 27454618 27454640 -58241114 + (CA)n Simple_repeat Simple_repeat 2 23 0 209 224 26 26 chr15 27454654 27454730 -58241024 + (TA)n Simple_repeat Simple_repeat 2 77 0 638 194 8 24 chr15 27454803 27454927 -58240827 - FLAM_C SINE Alu -11 122 1 373 278 71 0 chr15 27455143 27455269 -58240485 - MIR SINE MIR -36 226 92 291 54 0 0 chr15 27457421 27457458 -58238296 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 490 282 106 35 chr15 27458348 27458518 -58237236 + MIR SINE MIR 47 228 -34 556 209 165 25 chr15 27458618 27458776 -58236978 - MER5A DNA MER1_type -6 183 4 2448 136 44 5 chr15 27460018 27460430 -58235324 + MSTA LTR MaLR 1 428 0 485 331 154 47 chr15 27461107 27462023 -58233731 + L3 LINE CR1 552 1565 -12 1258 169 42 8 chr15 27462550 27462787 -58232967 - MSTA LTR MaLR 0 428 184 536 146 22 54 chr15 27462997 27463182 -58232572 + L1MA8 LINE L1 6113 6291 0 23 0 0 0 chr15 27463722 27463745 -58232009 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr15 27464136 27464165 -58231589 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr15 27465075 27465096 -58230658 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr15 27466173 27466203 -58229551 + AT_rich Low_complexity Low_complexity 1 30 0 180 121 15 45 chr15 27467903 27467969 -58227785 + (TTTG)n Simple_repeat Simple_repeat 2 65 0 239 275 165 0 chr15 27468023 27468114 -58227640 + MIR SINE MIR 29 134 -128 217 278 25 99 chr15 27468191 27468353 -58227401 + MIR SINE MIR 75 224 -38 21 36 0 0 chr15 27468387 27468415 -58227339 + AT_rich Low_complexity Low_complexity 1 28 0 210 282 42 42 chr15 27468798 27468869 -58226885 + MIR SINE MIR 12 82 -180 337 265 0 0 chr15 27468895 27468978 -58226776 - MIR SINE MIR -74 188 106 2095 130 3 10 chr15 27469234 27469541 -58226213 - AluSg SINE Alu -5 305 1 180 158 0 53 chr15 27470233 27470271 -58225483 + L3 LINE CR1 1451 1486 -91 196 66 131 0 chr15 27470579 27470640 -58225114 + (TTAA)n Simple_repeat Simple_repeat 4 72 0 292 230 108 0 chr15 27471014 27471088 -58224666 + L2 LINE L2 3231 3312 -1 2095 114 13 23 chr15 27471175 27471483 -58224271 - AluSg SINE Alu -4 306 2 540 0 0 0 chr15 27471483 27471543 -58224211 + (TC)n Simple_repeat Simple_repeat 2 61 0 443 221 0 9 chr15 27471543 27471656 -58224098 + (TA)n Simple_repeat Simple_repeat 2 113 0 4177 71 3 7 chr15 27471669 27472244 -58223510 - L1PA7 LINE L1 -20 6134 5562 265 337 0 11 chr15 27473768 27473863 -58221891 + GA-rich Low_complexity Low_complexity 1 94 0 22 0 0 0 chr15 27474596 27474618 -58221136 + AT_rich Low_complexity Low_complexity 1 22 0 2492 94 0 0 chr15 27474777 27475086 -58220668 + AluSc SINE Alu 1 309 0 418 243 10 0 chr15 27476146 27476249 -58219505 - MER94 DNA DNA -30 104 1 797 212 0 48 chr15 27476746 27476911 -58218843 - AluJo SINE Alu -9 293 137 763 244 151 34 chr15 27476912 27477503 -58218251 + HAL1 LINE L1 978 1637 -870 1411 104 16 32 chr15 27477551 27477800 -58217954 + L1MA2 LINE L1 6060 6304 0 896 133 0 44 chr15 27479165 27479300 -58216454 - AluJo SINE Alu -183 129 1 2388 67 0 0 chr15 27479399 27479684 -58216070 + AluY SINE Alu 1 285 -26 2352 56 0 0 chr15 27480153 27480438 -58215316 + AluY SINE Alu 15 299 -12 595 306 6 0 chr15 27482055 27482212 -58213542 - MIR SINE MIR 0 262 105 819 225 61 39 chr15 27483698 27483867 -58211887 + L2 LINE L2 2535 2716 -598 2301 167 94 15 chr15 27483867 27484333 -58211421 - MLT1D LTR MaLR -2 503 1 819 225 61 39 chr15 27484333 27484474 -58211280 + L2 LINE L2 2716 2852 -462 1568 271 149 0 chr15 27484474 27485039 -58210715 + MER69 DNA AcHobo 1 649 -1877 209 73 0 49 chr15 27485055 27485096 -58210658 + (TATATG)n Simple_repeat Simple_repeat 5 43 0 29 60 0 0 chr15 27485117 27485167 -58210587 + AT_rich Low_complexity Low_complexity 1 50 0 637 129 60 17 chr15 27485176 27485680 -58210074 + (TA)n Simple_repeat Simple_repeat 1 525 0 304 113 0 0 chr15 27485793 27485846 -58209908 + Alu SINE Alu 248 300 0 1033 263 133 47 chr15 27485879 27486309 -58209445 + L2 LINE L2 2847 3313 0 249 139 0 0 chr15 27486309 27486352 -58209402 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 670 117 0 0 chr15 27486372 27486483 -58209271 - L1PA10 LINE L1 -1278 4868 4758 5596 82 22 95 chr15 27486483 27487853 -58207901 + L1PA10 LINE L1 4866 6164 -4 1303 187 15 22 chr15 27487859 27488132 -58207622 + MLT1A1 LTR MaLR 45 315 -50 779 194 0 0 chr15 27488238 27488367 -58207387 - FLAM_C SINE Alu -4 129 1 30 0 0 0 chr15 27488605 27488635 -58207119 + AT_rich Low_complexity Low_complexity 1 30 0 298 312 64 6 chr15 27489311 27489468 -58206286 + L1ME LINE L1 138 303 -5902 764 295 90 25 chr15 27489810 27490706 -58205048 + L1ME LINE L1 786 1740 -4656 768 262 81 24 chr15 27491131 27491513 -58204241 + L1ME LINE L1 2200 2603 -3612 1516 196 120 17 chr15 27491534 27491942 -58203812 + MLT2B1 LTR ERVL 1 450 -70 266 243 10 0 chr15 27491947 27492050 -58203704 + (TA)n Simple_repeat Simple_repeat 1 104 0 324 151 9 160 chr15 27492054 27492160 -58203594 - L1MC4 LINE L1 -1340 6702 6613 238 175 0 32 chr15 27492162 27492225 -58203529 + (TA)n Simple_repeat Simple_repeat 1 61 0 263 315 133 14 chr15 27492328 27492471 -58203283 + L3 LINE CR1 922 1081 -496 185 341 91 11 chr15 27492592 27492680 -58203074 - L2 LINE L2 -39 3233 3139 234 371 114 22 chr15 27492752 27492953 -58202801 + L3 LINE CR1 1186 1367 -210 1631 213 13 3 chr15 27492953 27493258 -58202496 + AluJo SINE Alu 1 308 -4 234 371 114 22 chr15 27493258 27493414 -58202340 + L3 LINE CR1 1367 1576 -1 207 330 146 15 chr15 27493460 27493721 -58202033 - L2 LINE L2 -1021 2293 1999 334 202 87 58 chr15 27495363 27495467 -58200287 - MIR SINE MIR -55 207 101 1989 151 26 0 chr15 27495759 27496063 -58199691 - AluJo SINE Alu 0 312 1 632 129 9 52 chr15 27496253 27496369 -58199385 - ORSL DNA AcHobo 0 275 165 528 186 10 0 chr15 27496515 27496617 -58199137 - ORSL DNA AcHobo -172 103 1 1758 186 0 3 chr15 27496840 27497146 -58198608 - AluJo SINE Alu -3 309 5 2196 83 33 20 chr15 27497327 27497627 -58198127 + AluSp SINE Alu 2 305 -8 205 200 0 0 chr15 27498460 27498500 -58197254 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 330 330 176 5 chr15 27498518 27498706 -58197048 + L1MC4 LINE L1 7459 7678 -364 394 224 17 9 chr15 27498780 27498896 -58196858 + L1MC4 LINE L1 7758 7874 -168 12519 196 7 2 chr15 27498927 27501690 -58194064 + L1 LINE L1 2252 5028 -1118 1211 225 37 50 chr15 27502136 27502518 -58193236 + L1ME2 LINE L1 5779 6155 -9 29 0 0 0 chr15 27502519 27502548 -58193206 + AT_rich Low_complexity Low_complexity 1 29 0 278 295 19 29 chr15 27502921 27503026 -58192728 + MER5A DNA MER1_type 84 187 -2 206 287 16 107 chr15 27502923 27503045 -58192709 - MER5A DNA MER1_type -75 114 4 * 210 312 97 48 chr15 27503761 27504174 -58191580 + L2 LINE L2 2459 2891 -423 190 365 58 10 chr15 27506702 27506806 -58188948 + MIR SINE MIR 15 123 -139 189 302 63 0 chr15 27506923 27506986 -58188768 - L2 LINE L2 -1497 1817 1751 836 163 7 0 chr15 27506987 27507122 -58188632 + FLAM_C SINE Alu 1 136 -7 405 294 77 12 chr15 27507662 27507832 -58187922 + MIR SINE MIR 9 189 -73 195 162 0 0 chr15 27508604 27508641 -58187113 + (TG)n Simple_repeat Simple_repeat 2 38 0 2538 74 3 0 chr15 27508658 27508967 -58186787 + AluSp SINE Alu 1 310 -3 1850 104 21 11 chr15 27509222 27509501 -58186253 - L1PB1 LINE L1 0 6151 5870 236 285 7 51 chr15 27509543 27509680 -58186074 + CT-rich Low_complexity Low_complexity 2 132 0 294 354 73 17 chr15 27509710 27509888 -58185866 + MIR SINE MIR 60 247 -15 21 57 0 0 chr15 27509900 27509935 -58185819 + AT_rich Low_complexity Low_complexity 1 35 0 221 310 80 121 chr15 27509993 27510150 -58185604 - L2 LINE L2 -3 3269 3107 1710 151 31 57 chr15 27510150 27510468 -58185286 + AluJb SINE Alu 1 310 -2 221 310 80 121 chr15 27510468 27510774 -58184980 - L2 LINE L2 -165 3107 2825 422 298 8 8 chr15 27510833 27510957 -58184797 - MIR SINE MIR -23 239 116 884 163 0 0 chr15 27511237 27511378 -58184376 + FLAM_C SINE Alu 1 141 -2 214 271 110 127 chr15 27511392 27511802 -58183952 - L2 LINE L2 -825 2489 2087 217 234 78 47 chr15 27511842 27511906 -58183848 + L2 LINE L2 3247 3312 -1 36 40 0 0 chr15 27511971 27512021 -58183733 + AT_rich Low_complexity Low_complexity 1 50 0 2132 135 3 0 chr15 27512140 27512451 -58183303 - AluSx SINE Alu 0 312 1 3378 121 40 95 chr15 27512696 27513454 -58182300 + L1MA4 LINE L1 5585 6300 0 23 0 0 0 chr15 27515472 27515495 -58180259 + AT_rich Low_complexity Low_complexity 1 23 0 422 289 83 62 chr15 27515532 27515905 -58179849 + L1MC4a LINE L1 5439 5819 -1989 427 286 257 0 chr15 27515922 27516093 -58179661 + MIR SINE MIR 35 249 -13 269 243 10 48 chr15 27516095 27516198 -58179556 + L1MC4a LINE L1 5806 5904 -1904 22 0 0 0 chr15 27516208 27516230 -58179524 + AT_rich Low_complexity Low_complexity 1 22 0 399 182 215 66 chr15 27516238 27516359 -58179395 + L2 LINE L2 3173 3311 -2 1241 161 18 0 chr15 27516383 27516607 -58179147 + L1MB4 LINE L1 5935 6162 -18 199 307 50 79 chr15 27517364 27517465 -58178289 - L2 LINE L2 -43 3229 3132 21 57 0 0 chr15 27517548 27517583 -58178171 + AT_rich Low_complexity Low_complexity 1 35 0 191 111 0 28 chr15 27517620 27517656 -58178098 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 219 266 18 62 chr15 27517947 27518060 -58177694 + MIR SINE MIR 88 195 -67 1631 147 13 43 chr15 27518259 27518885 -58176869 + LTR8 LTR ERV1 1 689 -2 247 136 0 0 chr15 27519040 27519084 -58176670 - Charlie7 DNA MER1_type -2513 99 56 2315 134 35 7 chr15 27520678 27521103 -58174651 + LTR23 LTR ERV1 1 437 0 450 152 72 3 chr15 27521394 27521531 -58174223 + MER41C LTR ERV1 2 188 -366 450 130 0 0 chr15 27521531 27521600 -58174154 - MER41B LTR ERV1 0 635 567 * 1662 126 4 11 chr15 27521598 27521867 -58173887 - LTR39 LTR ERV1 -501 282 16 * 2938 152 71 63 chr15 27521845 27522495 -58173259 + LTR39 LTR ERV1 129 783 0 2362 86 0 32 chr15 27523891 27524205 -58171549 + AluSg SINE Alu 1 304 -6 1714 197 61 23 chr15 27524343 27524784 -58170970 - MLT1C LTR MaLR 0 467 10 1912 93 0 0 chr15 27524843 27525090 -58170664 + AluSc SINE Alu 63 309 0 301 303 113 44 chr15 27525211 27525485 -58170269 + L2 LINE L2 2931 3223 -49 * 375 281 16 87 chr15 27525478 27525608 -58170146 + MIR3 SINE MIR 25 140 -68 2222 104 3 7 chr15 27525608 27525915 -58169839 + AluY SINE Alu 1 306 -5 375 281 16 87 chr15 27525915 27525969 -58169785 + MIR3 SINE MIR 140 196 -12 2309 119 8 41 chr15 27525977 27526365 -58169389 - THE1C LTR MaLR 0 375 1 697 258 140 0 chr15 27526409 27526595 -58169159 - MIR SINE MIR -45 217 6 187 89 0 44 chr15 27526841 27526886 -58168868 + (TTATA)n Simple_repeat Simple_repeat 3 45 0 45 69 0 0 chr15 27526890 27526977 -58168777 + AT_rich Low_complexity Low_complexity 1 87 0 6491 63 4 1 chr15 27527395 27528233 -58167521 + L1PA7 LINE L1 5312 6151 -3 2044 137 10 51 chr15 27528245 27528412 -58167342 + L1MA9 LINE L1 5786 5958 -354 1888 139 0 50 chr15 27528412 27528735 -58167019 + AluJb SINE Alu 3 309 -3 2044 137 10 51 chr15 27528735 27528962 -58166792 + L1MA9 LINE L1 5958 6164 -148 782 159 23 0 chr15 27528967 27529099 -58166655 + AluJo SINE Alu 1 135 -177 906 102 13 19 chr15 27529103 27529260 -58166494 + L1MA9 LINE L1 6157 6312 0 22 0 0 0 chr15 27529333 27529355 -58166399 + AT_rich Low_complexity Low_complexity 1 22 0 221 355 64 63 chr15 27529491 27529971 -58165783 - L2 LINE L2 -219 3053 2377 572 249 72 28 chr15 27531824 27532005 -58163749 + MIR SINE MIR 9 197 -65 464 307 18 0 chr15 27533212 27533378 -58162376 + L1ME LINE L1 5523 5691 -430 1015 84 22 17 chr15 27533424 27533603 -58162151 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 5304 58 5 0 chr15 27534056 27534730 -58161024 + L1PA8 LINE L1 5496 6172 0 1401 141 12 28 chr15 27535037 27535292 -58160462 + L1PB3 LINE L1 5903 6153 -1 295 355 37 42 chr15 27535843 27536032 -58159722 + MER5A DNA MER1_type 1 188 -1 284 370 111 0 chr15 27536596 27536731 -58159023 - L2 LINE L2 -2 3270 3121 226 71 0 0 chr15 27536775 27536817 -58158937 - MER3 DNA MER1_type -29 180 139 302 125 0 0 chr15 27536826 27536874 -58158880 + L1MB7 LINE L1 6127 6174 -10 310 231 231 8 chr15 27536885 27537015 -58158739 - MER3 DNA MER1_type -50 159 1 247 296 95 39 chr15 27537036 27537215 -58158539 - L2 LINE L2 -187 3085 2897 428 240 34 29 chr15 27537403 27537578 -58158176 - L1ME3A LINE L1 -6 6164 5989 1903 241 65 20 chr15 27538284 27538795 -58156959 - MLT1F LTR MaLR -8 534 1 1793 144 11 58 chr15 27539212 27539393 -58156361 + MER65A LTR ERV1 115 274 -171 2321 98 0 0 chr15 27539393 27539689 -58156065 - AluSx SINE Alu -16 296 1 1793 144 11 58 chr15 27539689 27539854 -58155900 + MER65A LTR ERV1 274 445 0 195 162 0 0 chr15 27539920 27539957 -58155797 + (TTA)n Simple_repeat Simple_repeat 2 38 0 344 318 26 13 chr15 27540276 27540427 -58155327 - MER117 DNA MER1_type -44 153 1 182 189 0 0 chr15 27540440 27540477 -58155277 - MER5B DNA MER1_type -16 162 126 277 157 29 14 chr15 27540487 27540557 -58155197 + L1MC5 LINE L1 7682 7752 -209 3413 235 127 62 chr15 27540557 27540775 -58154979 - L1MC4 LINE L1 -134 7674 7471 1398 204 67 45 chr15 27540775 27541132 -58154622 - MLT1A1 LTR MaLR 0 365 1 3413 235 127 62 chr15 27541132 27542066 -58153688 - L1MC4 LINE L1 -337 7471 6599 2171 114 0 13 chr15 27542066 27542374 -58153380 - AluSx SINE Alu -8 304 1 3413 235 127 62 chr15 27542374 27542521 -58153233 - L1MC4 LINE L1 -1209 6599 6463 1911 133 48 79 chr15 27542521 27542875 -58152879 + MER61A LTR ERV1 1 343 0 3413 235 127 62 chr15 27542875 27543197 -58152557 - L1MC4 LINE L1 -1345 6463 6114 2154 108 3 3 chr15 27543197 27543493 -58152261 + AluSg SINE Alu 1 296 -14 3413 235 127 62 chr15 27543493 27543677 -58152077 - L1MC4 LINE L1 -1694 6114 5943 248 77 26 0 chr15 27543804 27543843 -58151911 + (GAAA)n Simple_repeat Simple_repeat 3 42 0 884 93 187 13 chr15 27544836 27544986 -58150768 + THE1C LTR MaLR 1 176 -199 1486 120 0 0 chr15 27545088 27545296 -58150458 - AluSc SINE Alu -101 208 1 8113 185 82 83 chr15 27545538 27546341 -58149413 - MER65-int LTR ERV1 -2363 2508 1705 1522 119 0 5 chr15 27546341 27546551 -58149203 - AluSg/x SINE Alu -19 293 85 8113 185 82 83 chr15 27546551 27547717 -58148037 - MER65-int LTR ERV1 -3166 1705 1311 585 92 0 0 chr15 27547717 27547815 -58147939 + (TA)n Simple_repeat Simple_repeat 2 99 0 8113 185 82 83 chr15 27547815 27549045 -58146709 - MER65-int LTR ERV1 -3560 1311 81 667 106 21 0 chr15 27549119 27549213 -58146541 - L1PB3 LINE L1 -1 6153 6058 21911 189 46 25 chr15 27549213 27549387 -58146367 - L1M4 LINE L1 -1433 6132 5963 11273 47 7 14 chr15 27549387 27550771 -58144983 + SVA Other Other 2 1376 -10 21911 189 46 25 chr15 27550771 27554160 -58141594 - L1M4 LINE L1 -1602 5963 2647 2634 52 0 0 chr15 27554160 27554469 -58141285 - AluY SINE Alu -2 309 1 21911 189 46 25 chr15 27554469 27556704 -58139050 - L1M4 LINE L1 -4918 2647 193 2108 131 0 19 chr15 27556704 27557016 -58138738 - AluSx SINE Alu -6 306 1 21911 189 46 25 chr15 27557016 27557204 -58138550 - L1M4 LINE L1 -7372 193 10 785 279 119 17 chr15 27557217 27557634 -58138120 + L1M4c LINE L1 954 1327 -5208 360 0 0 0 chr15 27557634 27557674 -58138080 + (CA)n Simple_repeat Simple_repeat 2 41 0 785 279 119 17 chr15 27557674 27557995 -58137759 + L1M4c LINE L1 1327 1939 -4596 1872 198 51 30 chr15 27558868 27559298 -58136456 - MLT1C LTR MaLR -2 465 17 447 309 8 24 chr15 27559336 27559459 -58136295 + MIR SINE MIR 25 145 -63 235 341 74 41 chr15 27559563 27559833 -58135921 - L2 LINE L2 -997 2317 2039 15038 199 43 22 chr15 27559859 27562299 -58133455 + L1PB1 LINE L1 27 2415 -4452 219 36 0 0 chr15 27562299 27562327 -58133427 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 15038 199 43 22 chr15 27562327 27563804 -58131950 + L1PB1 LINE L1 2415 3860 -3007 9558 50 4 144 chr15 27563804 27565392 -58130362 + SVA Other Other 20 1386 0 15038 199 43 22 chr15 27565392 27567663 -58128091 + L1PB1 LINE L1 3860 6505 -362 240 119 0 71 chr15 27567731 27567815 -58127939 + (TA)n Simple_repeat Simple_repeat 1 78 0 2434 132 8 16 chr15 27567823 27568194 -58127560 + L1PB1 LINE L1 6497 6864 -3 42 20 0 0 chr15 27568194 27568243 -58127511 + AT_rich Low_complexity Low_complexity 1 49 0 217 308 33 22 chr15 27568931 27569022 -58126732 - MIR SINE MIR -142 120 29 749 235 130 0 chr15 27569365 27569527 -58126227 + MER5A DNA MER1_type 1 183 -6 22 35 0 0 chr15 27570143 27570172 -58125582 + AT_rich Low_complexity Low_complexity 1 29 0 800 179 0 22 chr15 27570197 27570331 -58125423 - FLAM_A SINE Alu -1 132 2 485 45 0 15 chr15 27570418 27570484 -58125270 - L1MB3 LINE L1 -7 6176 6112 216 310 35 0 chr15 27570842 27570900 -58124854 + L2 LINE L2 3210 3269 -3 2318 151 28 6 chr15 27571211 27571568 -58124186 + MLT1A1 LTR MaLR 1 365 0 591 278 162 53 chr15 27571726 27572140 -58123614 + MLT1K LTR MaLR 108 566 -22 184 232 183 12 chr15 27573660 27573742 -58122012 - MIR SINE MIR -76 132 37 343 289 89 0 chr15 27574758 27574893 -58120861 - MIR SINE MIR -24 238 92 377 221 152 35 chr15 27574963 27575108 -58120646 + MIR3 SINE MIR 24 185 -23 2006 131 13 7 chr15 27575665 27575963 -58119791 - AluJb SINE Alu -12 300 1 247 222 48 16 chr15 27576015 27576078 -58119676 - MIR3 SINE MIR -26 182 118 2216 112 0 3 chr15 27576224 27576527 -58119227 + AluSx SINE Alu 1 302 -10 195 235 0 39 chr15 27577146 27577197 -58118557 - L3 LINE CR1 -4 1573 1525 403 239 5 151 chr15 27577254 27577292 -58118462 - MER5A DNA MER1_type -11 178 136 2455 78 0 0 chr15 27577292 27577599 -58118155 - AluY SINE Alu -4 307 1 403 239 5 151 chr15 27577599 27577626 -58118128 - MER5A DNA MER1_type -53 136 107 2013 144 0 20 chr15 27577626 27577931 -58117823 + AluJb SINE Alu 1 299 -13 403 239 5 151 chr15 27577931 27578069 -58117685 - MER5A DNA MER1_type -82 107 4 1957 103 7 11 chr15 27578095 27578407 -58117347 - AluSc SINE Alu 0 311 1 293 298 0 48 chr15 27578409 27578513 -58117241 - MIR SINE MIR -63 145 47 204 160 40 80 chr15 27580298 27580348 -58115406 + L2 LINE L2 3255 3302 -11 2063 116 0 0 chr15 27580348 27580623 -58115131 + AluSx SINE Alu 1 275 -37 651 26 0 0 chr15 27580626 27580703 -58115051 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 234 62 0 0 chr15 27580704 27580736 -58115018 + (CATA)n Simple_repeat Simple_repeat 1 32 0 291 316 81 0 chr15 27582778 27582914 -58112840 + MIR SINE MIR 114 260 -2 967 225 142 56 chr15 27582941 27583336 -58112418 + LTR16A LTR ERVL 16 444 -6 2304 107 0 0 chr15 27583458 27583758 -58111996 + AluSx SINE Alu 9 308 -4 1451 98 13 60 chr15 27584207 27584441 -58111313 - AluJb SINE Alu -5 307 85 209 362 0 0 chr15 27584581 27584675 -58111079 + L2 LINE L2 2508 2601 -713 618 292 98 55 chr15 27584680 27585118 -58110636 + L2 LINE L2 2813 3269 -3 1738 161 45 7 chr15 27585551 27585837 -58109917 + AluJo SINE Alu 2 298 -14 330 338 88 49 chr15 27585894 27586384 -58109370 - L2 LINE L2 -181 3091 2560 395 295 37 98 chr15 27586513 27586858 -58108896 + HAL1 LINE L1 2053 2362 -145 2305 69 0 75 chr15 27586858 27587192 -58108562 + AluY SINE Alu 1 309 -2 395 295 37 98 chr15 27587192 27587327 -58108427 + HAL1 LINE L1 2362 2504 -3 2320 53 4 0 chr15 27587476 27587757 -58107997 + AluY SINE Alu 30 311 0 279 79 0 0 chr15 27587770 27587808 -58107946 + (TA)n Simple_repeat Simple_repeat 2 39 0 397 158 95 11 chr15 27587919 27588014 -58107740 + MER112 DNA MER1_type 1 103 -157 407 261 110 0 chr15 27588093 27588268 -58107486 - MIR SINE MIR -16 246 53 814 159 29 22 chr15 27588889 27589027 -58106727 + FLAM_C SINE Alu 2 140 -3 407 163 113 0 chr15 27589887 27589967 -58105787 - HsTC2 DNA Tc2 0 1900 1812 424 275 93 0 chr15 27590017 27590209 -58105545 - MIR SINE MIR -30 232 24 23 0 0 0 chr15 27590413 27590436 -58105318 + AT_rich Low_complexity Low_complexity 1 23 0 2206 69 0 14 chr15 27590903 27591179 -58104575 + AluY SINE Alu 39 310 -1 1662 173 35 3 chr15 27591319 27591603 -58104151 + AluJo SINE Alu 1 293 -19 1418 199 48 17 chr15 27591819 27592135 -58103619 + AluJo SINE Alu 1 312 0 1163 275 60 63 chr15 27592388 27592675 -58103079 + L1MC4a LINE L1 5322 5609 -553 1685 146 35 4 chr15 27592675 27592935 -58102819 - AluJo SINE Alu -23 289 22 1163 275 60 63 chr15 27592935 27593230 -58102524 + L1MC4a LINE L1 5609 5544 -618 2492 77 0 0 chr15 27593230 27593527 -58102227 - AluY SINE Alu -14 297 1 1163 275 60 63 chr15 27593527 27593601 -58102153 + L1MC4a LINE L1 5543 5616 -546 1245 184 28 0 chr15 27593806 27594024 -58101730 + MER58A DNA MER1_type 1 224 0 1829 153 43 0 chr15 27594570 27594693 -58101061 + AluJo SINE Alu 1 117 -195 189 0 0 0 chr15 27594693 27594714 -58101040 + (TA)n Simple_repeat Simple_repeat 1 21 0 1829 153 43 0 chr15 27594714 27594872 -58100882 + AluJo SINE Alu 117 294 -18 234 192 0 0 chr15 27595270 27595322 -58100432 + (TA)n Simple_repeat Simple_repeat 2 53 0 1588 158 67 38 chr15 27595343 27595685 -58100069 + MLT1A1 LTR MaLR 1 352 -13 240 35 0 0 chr15 27595685 27595714 -58100040 + (CA)n Simple_repeat Simple_repeat 2 30 0 613 160 173 7 chr15 27595714 27595853 -58099901 + MER46B DNA MER2_type 15 57 -179 1702 157 37 8 chr15 27595855 27596123 -58099631 + AluSx SINE Alu 1 276 -36 2249 111 0 0 chr15 27596124 27596422 -58099332 + AluY SINE Alu 1 298 -13 442 172 20 0 chr15 27596443 27596542 -58099212 + (TA)n Simple_repeat Simple_repeat 2 102 0 216 62 42 21 chr15 27596562 27596610 -58099144 + (TA)n Simple_repeat Simple_repeat 1 49 0 23 0 0 0 chr15 27596801 27596824 -58098930 + AT_rich Low_complexity Low_complexity 1 23 0 870 215 27 32 chr15 27597764 27597983 -58097771 - MER20 DNA MER1_type -1 218 1 424 283 156 33 chr15 27598156 27598463 -58097291 + L2 LINE L2 2964 3308 -5 238 255 0 0 chr15 27598882 27598929 -58096825 + (CA)n Simple_repeat Simple_repeat 1 47 0 2138 136 0 0 chr15 27599180 27599489 -58096265 + AluSx SINE Alu 3 311 -1 498 250 157 23 chr15 27600015 27600231 -58095523 + MIR SINE MIR 17 261 -1 256 231 46 0 chr15 27600240 27600305 -58095449 + L2 LINE L2 3246 3313 0 189 204 23 23 chr15 27600882 27600926 -58094828 + L3 LINE CR1 1525 1568 -9 287 241 162 31 chr15 27601596 27601787 -58093967 + HAL1 LINE L1 154 369 -2138 14987 199 37 10 chr15 27601806 27603460 -58092294 + L1PB1 LINE L1 6 1614 -5253 2402 76 3 16 chr15 27603460 27603775 -58091979 + AluY SINE Alu 1 311 0 14987 199 37 10 chr15 27603775 27608276 -58087478 + L1PB1 LINE L1 1614 6506 -361 414 0 0 0 chr15 27608281 27608327 -58087427 + (TA)n Simple_repeat Simple_repeat 1 46 0 561 125 0 10 chr15 27608327 27608423 -58087331 - L1P LINE L1 -1403 4743 4649 264 165 41 8 chr15 27608423 27608544 -58087210 + (TA)n Simple_repeat Simple_repeat 2 126 0 2245 139 8 21 chr15 27608554 27608927 -58086827 + L1PB1 LINE L1 6498 6865 -2 2831 242 203 50 chr15 27608970 27609444 -58086310 + HAL1 LINE L1 418 818 -1689 2437 80 0 22 chr15 27609444 27609758 -58085996 + AluSg SINE Alu 1 307 -3 2831 242 203 50 chr15 27609758 27611077 -58084677 + HAL1 LINE L1 818 2485 -22 209 189 0 0 chr15 27611081 27611118 -58084636 + CT-rich Low_complexity Low_complexity 2 38 0 347 274 0 70 chr15 27611219 27611376 -58084378 + MIR SINE MIR 31 176 -86 204 299 82 21 chr15 27612016 27612113 -58083641 - L2 LINE L2 -33 3239 3137 369 225 67 8 chr15 27612395 27612515 -58083239 + MER94 DNA DNA 2 128 -6 1764 158 37 10 chr15 27612592 27612890 -58082864 + AluJo SINE Alu 1 306 -6 835 65 37 0 chr15 27613559 27613667 -58082087 + HY1 scRNA scRNA 1 112 0 31 0 0 0 chr15 27613673 27613704 -58082050 + AT_rich Low_complexity Low_complexity 1 31 0 287 262 10 29 chr15 27615186 27615289 -58080465 - MER5A DNA MER1_type -20 169 69 418 264 107 0 chr15 27615625 27615765 -58079989 + MIR SINE MIR 1 155 -107 2534 55 0 0 chr15 27615830 27616123 -58079631 + AluY SINE Alu 1 293 -18 1192 150 50 5 chr15 27616330 27616530 -58079224 - MER3 DNA MER1_type 0 209 1 1504 215 159 2 chr15 27617182 27617610 -58078144 + L1ME3 LINE L1 5667 6161 -1 2083 154 0 0 chr15 27618121 27618427 -58077327 + AluSx SINE Alu 1 306 -6 244 235 74 0 chr15 27618447 27618528 -58077226 + (TATATG)n Simple_repeat Simple_repeat 1 87 0 256 195 156 0 chr15 27619402 27619479 -58076275 + L2 LINE L2 3142 3230 -42 245 328 130 6 chr15 27619523 27619700 -58076054 + MIR3 SINE MIR 10 208 0 2318 112 3 0 chr15 27619767 27620071 -58075683 + AluSx SINE Alu 1 305 -7 232 309 25 25 chr15 27621226 27621307 -58074447 + MIR SINE MIR 27 107 -155 2409 86 0 3 chr15 27621627 27621930 -58073824 + AluSc SINE Alu 1 302 -7 2203 122 0 0 chr15 27621936 27622232 -58073522 + AluSx SINE Alu 3 298 -14 629 236 35 6 chr15 27622552 27622726 -58073028 + MER5A DNA MER1_type 2 180 -9 530 169 19 104 chr15 27622731 27622815 -58072939 + L1MB4 LINE L1 6040 6107 -73 2292 81 3 23 chr15 27622815 27623123 -58072631 - AluSq SINE Alu -10 303 2 530 169 19 104 chr15 27623123 27623192 -58072562 + L1MB4 LINE L1 6107 6180 0 311 265 148 49 chr15 27623228 27623390 -58072364 + MER5B DNA MER1_type 1 178 0 628 308 88 13 chr15 27623406 27623724 -58072030 + L3 LINE CR1 1232 1573 -4 1171 168 0 5 chr15 27623951 27624148 -58071606 + MER3 DNA MER1_type 14 209 0 931 263 12 8 chr15 27625117 27625368 -58070386 + MIR SINE MIR 8 259 -3 1795 160 0 33 chr15 27625837 27625979 -58069775 + AluJo SINE Alu 1 129 -183 2190 128 3 0 chr15 27625979 27626283 -58069471 + AluSx SINE Alu 1 305 -7 1795 160 0 33 chr15 27626283 27626440 -58069314 + AluJo SINE Alu 129 290 -22 536 247 51 0 chr15 27627274 27627432 -58068322 + L1MA8 LINE L1 6126 6291 0 2017 125 0 4 chr15 27628425 27628733 -58067021 + AluSg SINE Alu 1 307 0 264 315 11 11 chr15 27628759 27628848 -58066906 - MER102a DNA MER1_type -1 329 241 385 60 0 0 chr15 27628924 27628974 -58066780 + HY4 scRNA scRNA 23 72 -21 335 299 76 7 chr15 27629019 27629163 -58066591 - MER102a DNA MER1_type -172 158 5 912 143 0 0 chr15 27630715 27630848 -58064906 + FLAM_A SINE Alu 1 133 0 200 258 0 61 chr15 27630908 27630974 -58064780 - L2 LINE L2 0 3272 3211 372 178 14 0 chr15 27631010 27631083 -58064671 - MER5A DNA MER1_type -115 74 1 414 267 30 0 chr15 27631338 27631439 -58064315 - MIR3 SINE MIR -31 177 74 855 163 31 66 chr15 27631490 27631686 -58064068 + MER5A DNA MER1_type 1 189 0 833 203 11 11 chr15 27631812 27631989 -58063765 + MER5B DNA MER1_type 1 177 -1 1444 176 87 7 chr15 27632021 27632163 -58063591 + AluJo SINE Alu 1 130 -182 1676 178 39 4 chr15 27632163 27632444 -58063310 + AluJb SINE Alu 1 291 -21 1444 176 87 7 chr15 27632444 27632590 -58063164 + AluJo SINE Alu 130 312 0 3104 169 13 2 chr15 27632617 27633154 -58062600 + MER67A LTR ERV1 1 543 0 594 267 14 0 chr15 27635246 27635392 -58060362 + MER91A DNA MER1_type 49 196 0 983 138 25 0 chr15 27635539 27635698 -58060056 + L1MB4 LINE L1 6012 6174 -6 1817 159 3 34 chr15 27635962 27636282 -58059472 - AluJo SINE Alu -2 310 1 1541 116 0 58 chr15 27636367 27636608 -58059146 - 7SLRNA srpRNA srpRNA -93 227 1 817 205 115 0 chr15 27636850 27637050 -58058704 + MER58A DNA MER1_type 1 223 -1 288 53 0 0 chr15 27637066 27637104 -58058650 + (ATG)n Simple_repeat Simple_repeat 3 40 0 200 149 21 0 chr15 27637119 27637166 -58058588 + GA-rich Low_complexity Low_complexity 3 50 0 374 256 82 87 chr15 27637169 27637289 -58058465 - MIR SINE MIR -13 249 129 1806 176 13 3 chr15 27637289 27637591 -58058163 + AluJb SINE Alu 1 305 -7 374 256 82 87 chr15 27637591 27637665 -58058089 - MIR SINE MIR -133 129 56 2120 188 27 11 chr15 27638626 27639068 -58056686 + L1MA3 LINE L1 5853 6301 -4 201 328 33 0 chr15 27639328 27639389 -58056365 + L2 LINE L2 3170 3232 -40 414 235 114 30 chr15 27640427 27640593 -58055161 + MIR SINE MIR 4 183 -79 795 255 26 22 chr15 27642714 27642945 -58052809 - MIR SINE MIR -24 238 7 504 267 133 13 chr15 27642990 27643213 -58052541 - MIR SINE MIR -8 254 10 1244 109 0 6 chr15 27643362 27643537 -58052217 + AluSc SINE Alu 135 308 -1 763 259 88 4 chr15 27645462 27645690 -58050064 + MER112 DNA MER1_type 8 254 -6 351 0 0 0 chr15 27646413 27646452 -58049302 + (TC)n Simple_repeat Simple_repeat 2 40 0 204 97 0 0 chr15 27646451 27646482 -58049272 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 219 272 136 19 chr15 27646755 27646858 -58048896 + MIR SINE MIR 34 148 -60 198 135 0 0 chr15 27647183 27647201 -58048553 + (TAA)n Simple_repeat Simple_repeat 3 20 -19 1737 136 47 14 chr15 27647201 27647480 -58048274 + AluJo SINE Alu 1 288 -24 198 135 0 0 chr15 27647480 27647498 -58048256 + (TAA)n Simple_repeat Simple_repeat 19 39 0 353 321 43 31 chr15 27647557 27647719 -58048035 - MIR SINE MIR -79 183 20 * 537 287 33 25 chr15 27647653 27647840 -58047914 + MIR SINE MIR 10 191 -32 1899 154 10 0 chr15 27648067 27648360 -58047394 - AluJb SINE Alu -16 296 1 249 333 0 0 chr15 27648381 27648462 -58047292 - MIR SINE MIR -68 194 114 397 290 109 44 chr15 27649759 27649942 -58045812 + MIR SINE MIR 15 209 -53 2386 71 0 10 chr15 27650553 27650849 -58044905 + AluY SINE Alu 1 293 -18 213 308 33 33 chr15 27651531 27651622 -58044132 + MIR3 SINE MIR 1 91 -117 308 287 160 13 chr15 27651624 27651694 -58044060 + MER69A DNA AcHobo 6 64 -2462 2130 123 0 3 chr15 27651694 27651994 -58043760 - AluSg SINE Alu -11 299 1 308 287 160 13 chr15 27651994 27652073 -58043681 + MER69A DNA AcHobo 64 177 0 228 156 219 0 chr15 27652074 27652138 -58043616 + MIR SINE MIR 107 184 -78 336 241 56 28 chr15 27652320 27652428 -58043326 - MIR SINE MIR -70 192 82 945 114 0 50 chr15 27653175 27653315 -58042439 + FLAM_C SINE Alu 1 133 0 2501 61 3 0 chr15 27653389 27653685 -58042069 - AluSp SINE Alu -16 297 1 572 241 140 27 chr15 27653897 27654107 -58041647 + MIR SINE MIR 2 237 -25 2090 77 4 0 chr15 27655195 27655454 -58040300 + AluY SINE Alu 1 260 -51 185 284 54 40 chr15 27656085 27656159 -58039595 + L2 LINE L2 3238 3312 -1 255 213 0 0 chr15 27656784 27656831 -58038923 + L2 LINE L2 3265 3311 -2 464 265 85 90 chr15 27658144 27658310 -58037444 + L2 LINE L2 2035 2200 -1114 2239 116 0 0 chr15 27658310 27658612 -58037142 - AluSx SINE Alu -10 302 1 464 265 85 90 chr15 27658612 27658845 -58036909 + L2 LINE L2 2200 2432 -882 337 181 21 0 chr15 27658845 27658939 -58036815 + (TCCA)n Simple_repeat Simple_repeat 1 96 0 558 271 51 37 chr15 27658939 27659153 -58036601 + L2 LINE L2 2421 2637 -677 863 173 45 6 chr15 27659153 27659309 -58036445 - LTR35 LTR ERV1 0 618 457 2909 182 62 11 chr15 27659360 27659970 -58035784 + L1MB8 LINE L1 5428 6068 -110 1077 106 0 0 chr15 27659971 27660170 -58035584 - AluSg/x SINE Alu 0 338 140 715 193 7 0 chr15 27660170 27660310 -58035444 + L1MB7 LINE L1 6044 6184 0 1982 117 68 31 chr15 27660436 27660788 -58034966 + L1MA4 LINE L1 5925 6289 -11 1547 191 9 49 chr15 27660818 27661143 -58034611 - AluJb SINE Alu 0 312 1 26 30 0 0 chr15 27661252 27661285 -58034469 + AT_rich Low_complexity Low_complexity 1 33 0 318 327 80 50 chr15 27661571 27662131 -58033623 + L1ME3 LINE L1 4475 5051 -1095 582 134 52 0 chr15 27662149 27662246 -58033508 + L1MA10 LINE L1 6226 6327 -7 2033 120 3 20 chr15 27662479 27662780 -58032974 + AluJb SINE Alu 1 296 -16 642 233 246 36 chr15 27662789 27663119 -58032635 - L1MC4a LINE L1 -1828 5980 5582 462 314 61 33 chr15 27663139 27663384 -58032370 - MIR SINE MIR -9 253 2 2404 93 0 6 chr15 27663828 27664141 -58031613 + AluSq SINE Alu 1 311 -2 623 283 125 36 chr15 27664248 27664444 -58031310 + L1ME3 LINE L1 5255 5432 -730 2308 98 3 0 chr15 27664444 27664740 -58031014 - AluSp SINE Alu -16 297 1 623 283 125 36 chr15 27664740 27665178 -58030576 + L1ME3 LINE L1 5432 5949 -213 2126 105 7 0 chr15 27665786 27666071 -58029683 + AluSx SINE Alu 1 287 -25 532 184 0 0 chr15 27667157 27667244 -58028510 - Tigger5 DNA MER2_type 0 2323 2237 331 200 0 0 chr15 27667254 27667309 -58028445 - Tigger5 DNA MER2_type -2268 55 1 22 70 0 0 chr15 27667514 27667557 -58028197 + AT_rich Low_complexity Low_complexity 1 43 0 413 189 160 19 chr15 27667727 27667833 -58027921 - MER105 DNA DNA -83 121 1 261 246 56 0 chr15 27671321 27671419 -58024335 - MIR SINE MIR -69 139 72 183 42 0 0 chr15 27672468 27672492 -58023262 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 212 59 29 0 chr15 27672514 27672548 -58023206 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 776 247 0 0 chr15 27672552 27672710 -58023044 - FAM SINE Alu -17 158 1 1034 180 28 0 chr15 27672978 27673156 -58022598 - AluJo SINE Alu -14 298 116 1719 171 20 0 chr15 27673165 27673463 -58022291 - AluJo SINE Alu -8 304 1 1758 263 74 41 chr15 27673484 27673542 -58022212 - L1ME3A LINE L1 -82 6084 6029 2221 97 13 0 chr15 27673542 27673840 -58021914 + AluSq SINE Alu 1 302 -11 1758 263 74 41 chr15 27673840 27674629 -58021125 - L1ME3A LINE L1 -137 6029 5255 1860 108 8 8 chr15 27674651 27674911 -58020843 + AluSq SINE Alu 37 296 -17 719 312 55 21 chr15 27674916 27675591 -58020163 - L1MEd LINE L1 -4863 1256 464 1995 146 14 0 chr15 27675918 27676212 -58019542 + AluSx SINE Alu 1 298 -14 2137 106 27 7 chr15 27676665 27676958 -58018796 - AluSx SINE Alu -13 299 1 760 204 83 6 chr15 27677069 27677226 -58018528 - MER20 DNA MER1_type -4 215 47 248 302 219 0 chr15 27677451 27677547 -58018207 - L3 LINE CR1 -80 1497 1381 21 71 0 0 chr15 27677829 27677871 -58017883 + AT_rich Low_complexity Low_complexity 1 42 0 338 297 63 57 chr15 27678349 27678524 -58017230 - MIR SINE MIR -62 200 25 216 167 0 0 chr15 27679025 27679067 -58016687 - L2 LINE L2 0 3313 3272 25 31 0 0 chr15 27679545 27679577 -58016177 + AT_rich Low_complexity Low_complexity 1 32 0 435 207 130 57 chr15 27679627 27679873 -58015881 - L1MC4a LINE L1 -1769 6039 5776 1564 141 8 8 chr15 27679975 27680237 -58015517 - Tigger6 DNA MER2_type -1 1596 1335 1852 112 40 40 chr15 27680493 27680814 -58014940 + MLT1B LTR MaLR 1 321 -69 1783 166 7 20 chr15 27681192 27681493 -58014261 - AluJo SINE Alu -5 307 11 1207 194 0 5 chr15 27681972 27682188 -58013566 - AluJo SINE Alu -11 301 87 24 0 0 0 chr15 27682573 27682597 -58013157 + AT_rich Low_complexity Low_complexity 1 24 0 1708 181 13 19 chr15 27682908 27683217 -58012537 - AluJo SINE Alu -5 307 1 2049 141 0 3 chr15 27683455 27683753 -58012001 + AluSx SINE Alu 1 297 -15 568 194 194 24 chr15 27684094 27684305 -58011449 + L1ME3A LINE L1 5678 5924 -240 254 253 0 13 chr15 27684353 27684428 -58011326 + L1ME3A LINE L1 6089 6162 -8 853 246 97 56 chr15 27684428 27684470 -58011284 + L1MC4 LINE L1 6993 7032 -1010 2191 92 7 36 chr15 27684470 27684773 -58010981 - AluSg SINE Alu -16 294 1 853 246 97 56 chr15 27684773 27684797 -58010957 + L1MC4 LINE L1 7032 7054 -988 1851 160 3 0 chr15 27684797 27685084 -58010670 + AluJb SINE Alu 13 300 -12 853 246 97 56 chr15 27685084 27685203 -58010551 + L1MC4 LINE L1 7054 7167 -875 2129 68 68 7 chr15 27685203 27685495 -58010259 + AluY SINE Alu 1 310 -1 853 246 97 56 chr15 27685495 27685791 -58009963 + L1MC4 LINE L1 7167 7496 -546 547 289 75 36 chr15 27685795 27685989 -58009765 + L1MC4 LINE L1 7709 7921 -121 246 62 0 0 chr15 27685989 27686021 -58009733 + (TG)n Simple_repeat Simple_repeat 2 33 0 547 289 75 36 chr15 27686021 27686131 -58009623 + L1MC4 LINE L1 7921 8025 -17 2186 105 7 10 chr15 27687386 27687691 -58008063 + AluY SINE Alu 1 304 -7 429 299 98 33 chr15 27688434 27688648 -58007106 + L2 LINE L2 2827 3054 -218 227 308 41 103 chr15 27689695 27689841 -58005913 + MIR SINE MIR 11 147 -115 2183 132 0 0 chr15 27690054 27690358 -58005396 - AluSx SINE Alu -4 308 5 2077 118 0 10 chr15 27690367 27690664 -58005090 - AluSg SINE Alu -15 295 2 305 93 0 198 chr15 27690683 27690718 -58005036 + HsTC2 DNA Tc2 231 241 -1657 1840 134 29 4 chr15 27690718 27690995 -58004759 + AluSg SINE Alu 5 288 -22 305 93 0 198 chr15 27690995 27691045 -58004709 + HsTC2 DNA Tc2 241 299 -1599 707 247 135 68 chr15 27691058 27691231 -58004523 + HsTC2 DNA Tc2 513 673 -1225 1839 183 20 0 chr15 27691231 27691537 -58004217 - AluJb SINE Alu 0 312 1 707 247 135 68 chr15 27691537 27691748 -58004006 + HsTC2 DNA Tc2 673 923 -975 2168 138 3 0 chr15 27691822 27692133 -58003621 + AluSx SINE Alu 1 312 0 358 248 26 26 chr15 27692187 27692304 -58003450 + MIR SINE MIR 146 262 0 2333 79 3 0 chr15 27692559 27692850 -58002904 - AluSp SINE Alu -21 292 1 1719 175 37 14 chr15 27692961 27693258 -58002496 - AluJb SINE Alu -8 304 1 2316 105 0 13 chr15 27693580 27693895 -58001859 - AluSx SINE Alu -1 311 1 737 179 0 8 chr15 27694797 27694931 -58000823 + FLAM_A SINE Alu 1 133 0 22 35 0 0 chr15 27695410 27695439 -58000315 + AT_rich Low_complexity Low_complexity 1 29 0 2182 126 0 3 chr15 27695511 27695820 -57999934 + AluSx SINE Alu 1 308 -4 898 124 31 0 chr15 27696417 27696546 -57999208 + AluJb SINE Alu 1 133 -179 2359 95 13 0 chr15 27696552 27696857 -57998897 + AluSg SINE Alu 1 309 -1 2419 92 0 3 chr15 27697579 27697885 -57997869 + AluSx SINE Alu 1 305 -7 183 42 0 0 chr15 27698424 27698448 -57997306 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 212 59 29 0 chr15 27698470 27698504 -57997250 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 943 196 0 0 chr15 27698508 27698666 -57997088 - FAM SINE Alu -17 158 1 977 179 34 6 chr15 27698934 27699113 -57996641 - AluJo SINE Alu -13 299 116 250 167 0 33 chr15 27699122 27699182 -57996572 - Alu SINE Alu -1 301 244 347 278 0 11 chr15 27699370 27699460 -57996294 - MER112 DNA MER1_type -1 259 171 2411 39 4 0 chr15 27699664 27699967 -57995787 - AluY SINE Alu 0 305 2 215 127 36 18 chr15 27700002 27700057 -57995697 + (CATCT)n Simple_repeat Simple_repeat 5 60 0 478 250 59 166 chr15 27700065 27700317 -57995437 + L2 LINE L2 2819 2990 -323 2274 90 0 3 chr15 27700317 27700606 -57995148 - AluSc SINE Alu -21 288 1 478 250 59 166 chr15 27700606 27700865 -57994889 + L2 LINE L2 2990 3275 -38 2154 89 11 0 chr15 27701342 27701622 -57994132 + AluSp SINE Alu 15 297 -16 206 135 27 0 chr15 27701799 27701836 -57993918 - L2 LINE L2 -1061 2253 2216 1294 151 49 18 chr15 27702121 27702346 -57993408 + AluJb SINE Alu 67 298 -14 2443 64 0 0 chr15 27702480 27702778 -57992976 - AluY SINE Alu -11 300 3 186 321 14 114 chr15 27703010 27703150 -57992604 - L2 LINE L2 -2010 1304 1179 465 135 0 0 chr15 27703291 27703365 -57992389 - MLT1A1 LTR MaLR -1 364 291 287 136 0 17 chr15 27703361 27703420 -57992334 - FLAM_A SINE Alu 0 133 76 * 1281 185 38 35 chr15 27703429 27703560 -57992194 - MLT1A1 LTR MaLR -77 288 159 2216 101 0 7 chr15 27703560 27703857 -57991897 - AluSg SINE Alu -15 295 1 1281 185 38 35 chr15 27703857 27704012 -57991742 - MLT1A1 LTR MaLR -206 159 1 36 0 0 0 chr15 27704158 27704194 -57991560 + AT_rich Low_complexity Low_complexity 1 36 0 748 124 0 0 chr15 27704194 27704299 -57991455 - U6 snRNA snRNA -2 105 1 2295 108 0 0 chr15 27704543 27704840 -57990914 + AluSx SINE Alu 1 297 -15 338 257 72 72 chr15 27704841 27704993 -57990761 + L1MC/D LINE L1 5602 5753 -2055 211 268 14 14 chr15 27705037 27705108 -57990646 + (TA)n Simple_repeat Simple_repeat 1 71 0 360 283 79 28 chr15 27705483 27705773 -57989981 - L1MC4 LINE L1 -617 7425 7121 1509 259 131 54 chr15 27705919 27706835 -57988919 - L1MC4a LINE L1 -874 6934 5921 1968 152 10 3 chr15 27706835 27707132 -57988622 - AluJb SINE Alu -13 299 1 1509 259 131 54 chr15 27707132 27707294 -57988460 - L1MC4a LINE L1 -1887 5921 5773 510 292 16 52 chr15 27707744 27707994 -57987760 - L2 LINE L2 -104 3209 2969 365 311 81 60 chr15 27708009 27708292 -57987462 + LTR67 LTR ERVL 12 300 -257 299 216 27 0 chr15 27708293 27708367 -57987387 + LTR67 LTR ERVL 478 553 -4 581 384 66 15 chr15 27708368 27708701 -57987053 - L2 LINE L2 -398 2916 2567 399 277 52 56 chr15 27708707 27708789 -57986965 - L1MEd LINE L1 -4123 2187 2106 2317 118 0 6 chr15 27708789 27709103 -57986651 - AluSx SINE Alu 0 312 1 399 277 52 56 chr15 27709103 27709251 -57986503 - L1MEd LINE L1 -4204 2106 1958 716 251 128 26 chr15 27709289 27709672 -57986082 + L1MC5 LINE L1 7492 7913 -48 437 175 84 84 chr15 27710012 27710112 -57985642 - MER3 DNA MER1_type -19 143 41 1173 173 30 133 chr15 27710112 27710442 -57985312 + AluJo SINE Alu 1 296 -6 437 175 84 84 chr15 27710442 27710484 -57985270 - MER3 DNA MER1_type -120 42 1 815 268 78 60 chr15 27710528 27710675 -57985079 - L1MEd LINE L1 -4734 1576 1433 2350 109 0 3 chr15 27710675 27710987 -57984767 + AluSq SINE Alu 1 311 -2 815 268 78 60 chr15 27710987 27711426 -57984328 - L1MEd LINE L1 -4877 1433 1003 1494 173 8 8 chr15 27711426 27711669 -57984085 - AluJb SINE Alu 0 312 70 815 268 78 60 chr15 27711669 27712025 -57983729 - L1MEd LINE L1 -5307 1003 573 2342 102 3 0 chr15 27712546 27712850 -57982904 + AluSg SINE Alu 1 305 -5 966 131 77 77 chr15 27712917 27712998 -57982756 + Tigger2 DNA MER2_type 1 81 -2637 2147 122 0 10 chr15 27712998 27713302 -57982452 + AluSx SINE Alu 1 301 -11 966 131 77 77 chr15 27713302 27713346 -57982408 + Tigger2 DNA MER2_type 81 124 -2594 1457 159 83 43 chr15 27713346 27713622 -57982132 + AluJo SINE Alu 6 292 -20 966 131 77 77 chr15 27713622 27713754 -57982000 + Tigger2 DNA MER2_type 123 259 -2459 1092 157 0 0 chr15 27713827 27713986 -57981768 + AluJb SINE Alu 136 294 -18 522 83 0 0 chr15 27713987 27714059 -57981695 + (TA)n Simple_repeat Simple_repeat 1 72 0 1764 158 0 29 chr15 27714408 27714719 -57981035 + AluJb SINE Alu 1 302 -10 2321 109 0 0 chr15 27714966 27715269 -57980485 - AluSx SINE Alu -9 303 1 1776 140 15 0 chr15 27715434 27715699 -57980055 - AluJb SINE Alu -43 269 1 1784 146 32 65 chr15 27715818 27715950 -57979804 + AluSx SINE Alu 1 136 -176 1907 144 3 50 chr15 27715950 27716269 -57979485 + AluSx SINE Alu 1 304 -8 1784 146 32 65 chr15 27716269 27716445 -57979309 + AluSx SINE Alu 136 299 -13 1632 191 25 14 chr15 27716894 27717250 -57978504 + MLT1A1 LTR MaLR 6 365 0 216 0 0 0 chr15 27717477 27717501 -57978253 + (A)n Simple_repeat Simple_repeat 1 24 0 382 190 69 26 chr15 27717504 27717620 -57978134 - L1MC4a LINE L1 -1899 5909 5789 302 258 33 17 chr15 27717616 27717736 -57978018 - L1P4 LINE L1 -725 5440 5319 * 27 62 0 0 chr15 27717912 27717960 -57977794 + AT_rich Low_complexity Low_complexity 1 48 0 2316 84 7 3 chr15 27718109 27718407 -57977347 + AluSp SINE Alu 1 299 -14 277 342 83 38 chr15 27718810 27719050 -57976704 + L2 LINE L2 2820 3070 -202 403 290 109 44 chr15 27720079 27720262 -57975492 - MIR SINE MIR -53 209 15 229 231 29 58 chr15 27721195 27721368 -57974386 + (TTATA)n Simple_repeat Simple_repeat 5 172 0 23 54 0 0 chr15 27721394 27721431 -57974323 + AT_rich Low_complexity Low_complexity 1 37 0 2316 84 7 3 chr15 27721580 27721878 -57973876 + AluSp SINE Alu 1 299 -14 194 360 88 38 chr15 27722281 27722520 -57973234 + L2 LINE L2 2820 3070 -202 1692 177 0 23 chr15 27723099 27723404 -57972350 + AluJb SINE Alu 1 298 -14 682 236 35 6 chr15 27723724 27723898 -57971856 + MER5A DNA MER1_type 2 180 -9 474 169 19 104 chr15 27723903 27723987 -57971767 + L1MB4 LINE L1 6040 6107 -73 2259 81 3 23 chr15 27723987 27724294 -57971460 - AluSq SINE Alu -11 302 2 474 169 19 104 chr15 27724294 27724363 -57971391 + L1MB4 LINE L1 6107 6180 0 434 292 87 18 chr15 27725144 27725254 -57970500 - L1MC4 LINE L1 -17 8025 7924 246 62 0 0 chr15 27725254 27725286 -57970468 + (CA)n Simple_repeat Simple_repeat 2 33 0 434 292 87 18 chr15 27725286 27725394 -57970360 - L1MC4 LINE L1 -118 7924 7792 1913 174 0 0 chr15 27726402 27726713 -57969041 + AluSx SINE Alu 1 311 -1 180 295 248 0 chr15 27726870 27726999 -57968755 + L3 LINE CR1 1317 1477 -100 569 250 157 23 chr15 27727239 27727455 -57968299 + MIR SINE MIR 17 261 -1 280 231 46 0 chr15 27727464 27727529 -57968225 + L2 LINE L2 3246 3313 0 1531 177 26 0 chr15 27727940 27728206 -57967548 - AluJo SINE Alu -39 273 1 339 285 6 95 chr15 27728227 27728285 -57967469 - L1ME2 LINE L1 -83 6064 6002 2217 97 13 0 chr15 27728285 27728583 -57967171 + AluSq SINE Alu 1 302 -11 339 285 6 95 chr15 27728583 27728682 -57967072 - L1ME2 LINE L1 -145 6002 5921 1505 264 75 29 chr15 27728707 27729371 -57966383 - L1ME2 LINE L1 -219 5934 5240 1925 100 4 4 chr15 27729395 27729654 -57966100 + AluSg SINE Alu 37 295 -15 709 276 42 14 chr15 27729656 27730003 -57965751 - L1ME2 LINE L1 -4863 1256 971 484 316 58 11 chr15 27730084 27730274 -57965480 - L1ME2 LINE L1 -5401 718 520 599 206 0 74 chr15 27730720 27730909 -57964845 + L1MC5 LINE L1 7688 7862 -99 21 57 0 0 chr15 27730925 27730960 -57964794 + AT_rich Low_complexity Low_complexity 1 35 0 2227 121 0 0 chr15 27732025 27732331 -57963423 - AluSx SINE Alu -6 306 1 2001 135 10 0 chr15 27732635 27732931 -57962823 + AluSx SINE Alu 1 299 -13 1167 121 145 5 chr15 27733426 27733633 -57962121 + MER46A DNA MER2_type 1 236 0 894 138 0 0 chr15 27734001 27734131 -57961623 + AluSq/x SINE Alu 1 130 -182 281 70 47 0 chr15 27734131 27734174 -57961580 + Alu SINE Alu 249 293 -8 410 232 22 22 chr15 27734730 27734868 -57960886 - L1M4 LINE L1 -771 5375 5238 275 286 60 30 chr15 27735315 27735483 -57960271 + L1ME LINE L1 5524 5696 -425 2450 39 0 0 chr15 27736109 27736421 -57959333 - AluY SINE Alu 0 312 1 1961 238 126 16 chr15 27736459 27737070 -57958684 + MER20B DNA MER1_type 1 700 -83 1912 177 0 0 chr15 27737070 27737369 -57958385 - AluJb SINE Alu -12 300 2 1961 238 126 16 chr15 27737369 27737456 -57958298 + MER20B DNA MER1_type 700 776 -7 1793 113 67 18 chr15 27737731 27738014 -57957740 + AluSx SINE Alu 1 297 -15 295 238 0 12 chr15 27738554 27738638 -57957116 + L1ME LINE L1 5595 5677 -444 418 188 139 27 chr15 27738731 27738954 -57956800 - L1MC5 LINE L1 -32 7929 7682 2334 91 3 28 chr15 27739052 27739371 -57956383 + AluSq SINE Alu 1 311 -2 24 53 0 0 chr15 27739461 27739499 -57956255 + AT_rich Low_complexity Low_complexity 1 38 0 2512 54 0 0 chr15 27739566 27739863 -57955891 + AluY SINE Alu 1 297 -14 973 249 111 70 chr15 27740372 27741209 -57954545 + HAL1 LINE L1 1624 2494 -13 1387 163 16 8 chr15 27741226 27741484 -57954270 - L1PB4 LINE L1 -2 6154 5895 2227 88 0 7 chr15 27741497 27741781 -57953973 + AluSg SINE Alu 1 282 -28 249 91 0 0 chr15 27741748 27741781 -57953973 + Alu SINE Alu 250 305 0 208 0 0 0 chr15 27741781 27741804 -57953950 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 26 0 0 0 chr15 27742011 27742037 -57953717 + AT_rich Low_complexity Low_complexity 1 26 0 2316 101 0 0 chr15 27742105 27742401 -57953353 - AluSp SINE Alu -9 304 9 2265 150 65 96 chr15 27742486 27743007 -57952747 + MLT1D LTR MaLR 1 505 0 403 234 107 42 chr15 27743056 27743266 -57952488 - L1P3 LINE L1 -436 5736 5500 1254 114 0 0 chr15 27743494 27743660 -57952094 + AluSg/x SINE Alu 132 297 -13 1843 150 28 0 chr15 27744213 27744499 -57951255 + AluSx SINE Alu 1 294 -18 989 162 50 0 chr15 27744505 27744684 -57951070 + MER33 DNA MER1_type 7 194 -130 1825 168 0 10 chr15 27744686 27744977 -57950777 + AluJb SINE Alu 1 288 -24 540 206 0 47 chr15 27745015 27745122 -57950632 + AluJo SINE Alu 126 227 -85 431 250 0 0 chr15 27745428 27745524 -57950230 + MIR SINE MIR 93 188 -74 1354 167 4 49 chr15 27745547 27745811 -57949943 + AluJo SINE Alu 29 280 -32 45 16 0 16 chr15 27745811 27745862 -57949892 + AT_rich Low_complexity Low_complexity 1 52 -10 1827 172 7 10 chr15 27745862 27746159 -57949595 + AluJb SINE Alu 1 296 -16 45 16 0 16 chr15 27746159 27746170 -57949584 + AT_rich Low_complexity Low_complexity 52 62 0 202 222 0 0 chr15 27746186 27746231 -57949523 + MIR SINE MIR 218 262 0 287 284 55 18 chr15 27746286 27746395 -57949359 - MIR SINE MIR -79 183 71 2494 78 0 7 chr15 27746482 27746788 -57948966 - AluSx SINE Alu -8 304 1 263 287 82 33 chr15 27747258 27747380 -57948374 + MIR SINE MIR 19 146 -62 2521 72 0 0 chr15 27747468 27747772 -57947982 - AluY SINE Alu -7 304 1 2261 107 17 0 chr15 27747845 27748144 -57947610 - AluSx SINE Alu -8 304 1 1596 184 6 44 chr15 27748174 27748318 -57947436 + AluJb SINE Alu 1 149 -163 2329 93 0 13 chr15 27748318 27748628 -57947126 + AluSx SINE Alu 1 306 -6 1596 184 6 44 chr15 27748628 27748804 -57946950 + AluJb SINE Alu 149 309 -3 2282 93 0 3 chr15 27749336 27749625 -57946129 - AluSc SINE Alu -21 288 1 391 257 82 29 chr15 27749713 27749884 -57945870 + L2 LINE L2 3096 3275 -38 2198 98 10 0 chr15 27750361 27750656 -57945098 + AluSp SINE Alu 15 312 -1 194 135 27 0 chr15 27750818 27750855 -57944899 - L2 LINE L2 -1061 2253 2216 1292 151 49 18 chr15 27751140 27751365 -57944389 + AluJb SINE Alu 67 298 -14 2486 64 0 0 chr15 27751499 27751797 -57943957 - AluY SINE Alu -11 300 3 501 179 17 14 chr15 27752310 27752432 -57943322 - MLT1A1 LTR MaLR -1 380 267 311 136 0 17 chr15 27752380 27752439 -57943315 - FLAM_A SINE Alu 0 133 76 * 1405 181 38 41 chr15 27752442 27752579 -57943175 - MLT1A1 LTR MaLR -73 292 156 2242 101 0 7 chr15 27752579 27752876 -57942878 - AluSg SINE Alu -15 295 1 1405 181 38 41 chr15 27752876 27753031 -57942723 - MLT1A1 LTR MaLR -209 156 1 36 0 0 0 chr15 27753177 27753213 -57942541 + AT_rich Low_complexity Low_complexity 1 36 0 702 142 0 9 chr15 27753213 27753319 -57942435 - U6 snRNA snRNA -2 105 1 1799 145 45 10 chr15 27753564 27753853 -57941901 + AluSx SINE Alu 1 299 -13 1958 138 10 10 chr15 27754050 27754348 -57941406 - AluSx SINE Alu -14 298 1 2271 104 0 0 chr15 27754379 27754668 -57941086 + AluSc SINE Alu 1 289 -20 702 220 147 16 chr15 27754849 27755040 -57940714 + MER46C DNA MER2_type 12 227 -111 736 231 25 20 chr15 27755133 27755336 -57940418 - MIR SINE MIR -1 261 58 351 204 124 0 chr15 27755633 27755746 -57940008 - L1ME4a LINE L1 -21 6100 5974 293 217 133 56 chr15 27755787 27755967 -57939787 - L1ME4a LINE L1 -223 5898 5705 583 276 51 28 chr15 27755968 27756185 -57939569 + MIR SINE MIR 31 252 -10 646 282 165 12 chr15 27756432 27756772 -57938982 - L3 LINE CR1 -9 1568 1177 222 286 10 51 chr15 27756956 27757054 -57938700 - L3 LINE CR1 -464 1113 1020 1565 166 21 24 chr15 27757096 27757385 -57938369 + AluJb SINE Alu 5 292 -20 332 176 0 14 chr15 27757404 27757478 -57938276 + GA-rich Low_complexity Low_complexity 4 76 0 2228 113 0 3 chr15 27758134 27758434 -57937320 - AluSq SINE Alu -14 299 1 640 145 153 8 chr15 27759207 27759338 -57936416 + Charlie1b DNA MER1_type 130 279 -244 22 70 0 0 chr15 27760577 27760620 -57935134 + GC_rich Low_complexity Low_complexity 1 43 0 185 345 73 9 chr15 27762590 27762700 -57933054 - L2 LINE L2 -508 2806 2690 290 326 47 16 chr15 27762843 27763036 -57932718 - L2 LINE L2 -833 2481 2283 * 390 294 158 49 chr15 27763034 27763211 -57932543 - L2 LINE L2 -4 3309 3153 2061 112 18 0 chr15 27763211 27763497 -57932257 + AluSx SINE Alu 1 291 -21 390 294 158 49 chr15 27763497 27763748 -57932006 - L2 LINE L2 -160 3153 2834 2479 57 0 31 chr15 27763813 27764130 -57931624 + AluY SINE Alu 1 307 -4 197 295 221 0 chr15 27764140 27764262 -57931492 - L2 LINE L2 -727 2587 2439 1054 136 182 34 chr15 27764268 27764532 -57931222 - MER3 DNA MER1_type 0 2538 2236 257 250 98 18 chr15 27764535 27764647 -57931107 - MER3 DNA MER1_type -41 168 48 211 340 42 28 chr15 27764650 27764794 -57930960 - L2 LINE L2 -449 2865 2720 667 189 120 47 chr15 27764917 27765101 -57930653 + MER5C DNA MER1_type 1 170 -154 2256 112 0 3 chr15 27765101 27765405 -57930349 - AluSc SINE Alu -6 303 1 2352 99 6 6 chr15 27765407 27765720 -57930034 - AluSp SINE Alu 0 313 1 667 189 120 47 chr15 27765720 27765765 -57929989 + MER5C DNA MER1_type 170 250 -74 664 282 34 5 chr15 27765938 27766147 -57929607 - MIR SINE MIR -1 261 47 1808 146 11 14 chr15 27766388 27766668 -57929086 - AluJb SINE Alu -33 279 1 862 199 51 93 chr15 27766710 27766776 -57928978 + L1ME LINE L1 5258 5325 -855 2244 116 7 0 chr15 27766776 27767077 -57928677 + AluSx SINE Alu 1 303 -9 862 199 51 93 chr15 27767077 27767384 -57928370 + L1ME LINE L1 5325 5604 -576 1321 163 218 23 chr15 27767517 27767824 -57927930 + MSTB1 LTR MaLR 1 367 -65 227 373 34 11 chr15 27768441 27768618 -57927136 - L2 LINE L2 -960 2354 2174 185 243 153 27 chr15 27768672 27768783 -57926971 - MIR SINE MIR -6 256 132 183 163 0 23 chr15 27768913 27768956 -57926798 - L2 LINE L2 -1356 1958 1917 575 212 33 33 chr15 27769079 27769190 -57926564 + MER113 DNA MER1_type? 192 302 -219 1728 184 7 3 chr15 27769190 27769484 -57926270 - AluJb SINE Alu -17 295 1 575 212 33 33 chr15 27769484 27769599 -57926155 + MER113 DNA MER1_type? 302 521 0 361 93 0 0 chr15 27770700 27770754 -57925000 + Alu SINE Alu 249 302 0 263 287 82 33 chr15 27770845 27770967 -57924787 - MIR SINE MIR -62 146 19 2422 84 0 0 chr15 27771438 27771734 -57924020 + AluY SINE Alu 1 296 -15 1504 124 49 0 chr15 27772180 27772405 -57923349 - AluJb SINE Alu -1 311 76 443 190 120 0 chr15 27772991 27773091 -57922663 + MER3 DNA MER1_type 32 143 -66 841 251 128 26 chr15 27773431 27773814 -57921940 - L1MC5 LINE L1 -48 7913 7492 414 271 65 61 chr15 27773852 27774000 -57921754 + L1MEc LINE L1 2044 2195 -4201 2290 117 0 16 chr15 27774000 27774316 -57921438 + AluSx SINE Alu 1 311 -1 414 271 65 61 chr15 27774316 27774396 -57921358 + L1MEc LINE L1 2195 2273 -4123 475 375 68 18 chr15 27774402 27774682 -57921072 + L2 LINE L2 2567 2860 -454 288 189 54 27 chr15 27774736 27774810 -57920944 - LTR67 LTR ERVL -4 553 478 472 301 115 11 chr15 27775562 27775960 -57919794 - L1ME3 LINE L1 -303 5818 5466 2180 137 0 3 chr15 27775963 27776276 -57919478 + AluSx SINE Alu 1 312 0 315 248 26 26 chr15 27776330 27776447 -57919307 + MIR SINE MIR 146 262 0 2237 100 7 0 chr15 27776702 27776992 -57918762 - AluSq SINE Alu -21 292 1 2352 99 6 6 chr15 27776994 27777307 -57918447 - AluSp SINE Alu 0 313 1 1264 222 3 11 chr15 27777814 27778098 -57917656 - AluY SINE Alu -10 301 20 1632 120 0 24 chr15 27778135 27778385 -57917369 + AluSq SINE Alu 68 311 -2 1629 179 6 26 chr15 27778401 27778713 -57917041 + AluJo SINE Alu 7 312 0 2085 147 0 7 chr15 27778719 27779026 -57916728 + AluSx SINE Alu 1 305 -7 492 160 21 0 chr15 27779036 27779130 -57916624 + L1MC1 LINE L1 5187 5282 -864 997 120 8 0 chr15 27779131 27779264 -57916490 + AluSq/x SINE Alu 1 134 -178 291 158 99 59 chr15 27779265 27779366 -57916388 + L1MC1 LINE L1 5263 5367 -966 2392 92 0 10 chr15 27779367 27779681 -57916073 + AluY SINE Alu 1 311 0 2103 127 6 19 chr15 27779700 27780016 -57915738 + AluSx SINE Alu 1 312 0 585 124 0 34 chr15 27780046 27780135 -57915619 + AluS SINE Alu 2 87 -225 1753 135 5 158 chr15 27780136 27780567 -57915187 + L1MC1 LINE L1 5368 5732 -2263 2150 92 13 28 chr15 27780575 27780892 -57914862 - AluSp SINE Alu -1 312 1 435 216 39 39 chr15 27781066 27781219 -57914535 - AluSq SINE Alu -87 226 74 3087 120 95 51 chr15 27781371 27781499 -57914255 + L1MC1 LINE L1 5718 5839 -494 2457 90 0 3 chr15 27781499 27781810 -57913944 + AluSq SINE Alu 1 310 -3 3087 120 95 51 chr15 27781810 27781910 -57913844 + L1MC1 LINE L1 5839 5933 -400 1769 92 134 8 chr15 27781910 27782172 -57913582 + AluSc SINE Alu 1 295 -14 3087 120 95 51 chr15 27782172 27782532 -57913222 + L1MC1 LINE L1 5933 6333 0 252 156 0 0 chr15 27782540 27782585 -57913169 - Charlie1 DNA MER1_type -56 2705 2661 300 180 0 0 chr15 27782585 27782635 -57913119 - L1MC1 LINE L1 -27 6306 6257 285 129 0 0 chr15 27782680 27782742 -57913012 + Charlie1 DNA MER1_type 2523 2584 -177 2289 89 3 0 chr15 27782781 27783095 -57912659 - AluSp SINE Alu 0 313 2 222 37 0 0 chr15 27783101 27783128 -57912626 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2194 86 31 14 chr15 27783130 27783421 -57912333 - AluSc SINE Alu -13 296 1 1741 169 0 29 chr15 27783445 27783758 -57911996 + AluJb SINE Alu 1 304 -8 1056 195 31 5 chr15 27783758 27783953 -57911801 + MER21A-int LTR ERV1 1521 1720 -2471 13281 152 30 36 chr15 27783957 27784902 -57910852 + MER21A-int LTR ERV1 1838 2787 -1404 207 0 0 0 chr15 27784902 27784925 -57910829 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 13281 152 30 36 chr15 27784925 27784937 -57910817 + MER21A-int LTR ERV1 2787 2798 -1393 2273 57 7 57 chr15 27784937 27785238 -57910516 - AluY SINE Alu -25 286 1 13281 152 30 36 chr15 27785238 27785519 -57910235 + MER21A-int LTR ERV1 2798 3079 -1112 2425 79 0 0 chr15 27785519 27785810 -57909944 + AluSg SINE Alu 1 291 -19 240 35 0 0 chr15 27785810 27785839 -57909915 + (TA)n Simple_repeat Simple_repeat 2 30 0 13281 152 30 36 chr15 27785839 27786964 -57908790 + MER21A-int LTR ERV1 3077 4191 0 1151 139 166 5 chr15 27786969 27787192 -57908562 + MER21A LTR ERV1 6 264 -667 827 102 0 2 chr15 27787224 27787471 -57908283 + AluSx SINE Alu 1 295 -14 946 189 97 0 chr15 27787471 27787646 -57908108 + MER21B LTR ERV1 308 499 -364 816 133 126 0 chr15 27787639 27787782 -57907972 - Charlie1b DNA MER1_type -228 295 135 * 225 0 0 0 chr15 27787782 27787807 -57907947 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 2242 96 0 0 chr15 27787807 27788087 -57907667 - AluSx SINE Alu -32 280 1 2053 88 39 59 chr15 27788087 27788393 -57907361 - AluSx SINE Alu -12 300 1 1046 105 46 0 chr15 27788393 27788546 -57907208 + MER50 LTR ERV1 566 725 -9 531 147 128 29 chr15 27788546 27788648 -57907106 + FLAM_A SINE Alu 21 132 -10 558 138 153 43 chr15 27788648 27788902 -57906852 - Zaphod DNA AcHobo -3066 965 684 307 267 47 0 chr15 27788902 27788988 -57906766 - L1MC4 LINE L1 -1339 6703 6614 * 357 267 0 0 chr15 27788936 27789026 -57906728 + L1MC4 LINE L1 6614 6703 -1339 2256 48 0 8 chr15 27789029 27789297 -57906457 - AluY SINE Alu -9 302 37 2091 121 0 0 chr15 27789473 27789746 -57906008 + AluSx SINE Alu 16 288 -24 333 307 11 0 chr15 27789759 27789847 -57905907 + Charlie1 DNA MER1_type 1 89 -2672 628 119 88 126 chr15 27789848 27789890 -57905864 - MER46A DNA MER2_type -2496 235 193 2091 97 4 7 chr15 27789890 27790168 -57905586 + AluSq SINE Alu 20 296 -17 628 119 88 126 chr15 27790168 27790284 -57905470 - MER46A DNA MER2_type -2538 193 83 1863 109 102 11 chr15 27790302 27790586 -57905168 + AluSq SINE Alu 1 310 -3 364 176 55 44 chr15 27790586 27790666 -57905088 - MER50 LTR ERV1 -162 572 489 2315 78 7 7 chr15 27790670 27791018 -57904736 - AluSq SINE Alu 0 313 1 1019 206 57 24 chr15 27791018 27791265 -57904489 - MER50 LTR ERV1 -470 264 10 2398 72 0 7 chr15 27791310 27791614 -57904140 - AluY SINE Alu -9 302 1 1257 205 28 64 chr15 27791639 27791904 -57903850 + Zaphod DNA AcHobo 3595 3868 -163 2119 119 3 22 chr15 27791904 27792216 -57903538 - AluSx SINE Alu -6 306 1 1257 205 28 64 chr15 27792216 27792281 -57903473 + Zaphod DNA AcHobo 3868 3911 -120 2515 58 0 3 chr15 27792281 27792576 -57903178 + AluY SINE Alu 1 294 -17 1257 205 28 64 chr15 27792576 27792635 -57903119 + Zaphod DNA AcHobo 3911 3971 -60 2075 132 0 16 chr15 27792635 27792939 -57902815 + AluSx SINE Alu 1 299 -13 342 295 0 0 chr15 27792979 27793057 -57902697 + MER115 DNA AcHobo 616 693 0 827 127 0 0 chr15 27793602 27793720 -57902034 + FLAM_C SINE Alu 1 118 -25 2244 113 0 3 chr15 27793741 27794043 -57901711 + AluSx SINE Alu 1 301 -11 207 0 0 0 chr15 27794043 27794066 -57901688 + (TA)n Simple_repeat Simple_repeat 2 24 0 1966 144 3 10 chr15 27794521 27794826 -57900928 + AluSx SINE Alu 1 303 -9 408 160 40 0 chr15 27794973 27795048 -57900706 - MER116 DNA Mariner -2 78 1 2334 81 0 0 chr15 27795107 27795392 -57900362 + AluSc SINE Alu 1 285 -24 1229 92 92 6 chr15 27795404 27795578 -57900176 - AluSx SINE Alu -123 189 1 1749 199 16 48 chr15 27795633 27796010 -57899744 + MLT1A1 LTR MaLR 1 365 0 1711 79 19 0 chr15 27796132 27796348 -57899406 + AluY SINE Alu 1 220 -91 213 39 0 0 chr15 27796364 27796390 -57899364 + (A)n Simple_repeat Simple_repeat 1 26 0 2168 108 14 0 chr15 27796547 27796844 -57898910 - AluSc SINE Alu -8 301 1 2052 114 30 3 chr15 27796845 27797144 -57898610 - AluSq SINE Alu -6 307 1 248 237 212 8 chr15 27797605 27797723 -57898031 + L1ME4a LINE L1 5840 5981 -140 563 372 21 5 chr15 27797723 27797914 -57897840 + MER91A DNA MER1_type 1 194 -2 262 270 54 0 chr15 27798056 27798130 -57897624 + L1MC5 LINE L1 7830 7907 -54 2256 111 0 3 chr15 27798130 27798437 -57897317 - AluSq SINE Alu -7 306 1 2500 61 0 0 chr15 27798897 27799194 -57896560 - AluY SINE Alu -14 297 1 2241 116 3 0 chr15 27799362 27799665 -57896089 - AluSp SINE Alu -9 304 1 899 315 40 71 chr15 27799735 27800019 -57895735 + L2 LINE L2 2248 2539 -775 2235 94 0 3 chr15 27800019 27800305 -57895449 + AluSg SINE Alu 2 286 -24 899 315 40 71 chr15 27800305 27800652 -57895102 + L2 LINE L2 2539 2859 -455 927 258 5 14 chr15 27800812 27801033 -57894721 - MIR SINE MIR -43 219 1 2312 75 3 3 chr15 27801818 27802111 -57893643 - AluSc SINE Alu -16 293 1 192 347 151 22 chr15 27802689 27802914 -57892840 - L2 LINE L2 -337 2977 2724 1923 96 74 0 chr15 27803327 27803597 -57892157 + AluSc SINE Alu 1 290 -19 2098 129 0 0 chr15 27803710 27804004 -57891750 + AluJb SINE Alu 1 294 -18 2547 65 0 7 chr15 27804004 27804312 -57891442 + AluY SINE Alu 1 306 -5 258 32 0 0 chr15 27804801 27804832 -57890922 + (TTTTC)n Simple_repeat Simple_repeat 1 31 0 320 163 0 0 chr15 27804839 27804888 -57890866 - FLAM_A SINE Alu -25 108 60 181 200 71 129 chr15 27806183 27806230 -57889524 + MER5A DNA MER1_type 27 68 -121 2089 140 0 0 chr15 27806230 27806523 -57889231 + AluSx SINE Alu 1 293 -19 181 200 71 129 chr15 27806523 27806560 -57889194 + MER5A DNA MER1_type 68 106 -83 2303 71 54 0 chr15 27806738 27807032 -57888722 + AluSp SINE Alu 1 310 -3 1488 214 0 22 chr15 27807502 27807815 -57887939 - AluJo SINE Alu -6 306 1 2429 103 17 29 chr15 27808073 27808423 -57887331 - L1PB2 LINE L1 -2 6149 5804 2257 118 0 3 chr15 27808446 27808759 -57886995 + AluSx SINE Alu 1 312 0 2191 119 0 10 chr15 27809202 27809512 -57886242 + AluSx SINE Alu 1 307 -5 1693 156 20 43 chr15 27809522 27809824 -57885930 + AluJo SINE Alu 9 303 -9 2089 111 4 0 chr15 27809838 27810151 -57885603 + AluSx SINE Alu 3 316 0 354 327 0 9 chr15 27810366 27810476 -57885278 + MER93a LTR ERV1 1 109 -293 180 0 0 0 chr15 27810722 27810742 -57885012 + (A)n Simple_repeat Simple_repeat 1 20 0 793 196 20 14 chr15 27810761 27810909 -57884845 + FRAM SINE Alu 10 158 -18 1352 151 50 0 chr15 27810941 27811160 -57884594 + AluSx SINE Alu 1 230 -82 234 91 0 0 chr15 27811545 27811578 -57884176 + (A)n Simple_repeat Simple_repeat 1 33 0 321 26 0 0 chr15 27811944 27811982 -57883772 + (CA)n Simple_repeat Simple_repeat 2 39 0 614 252 30 88 chr15 27812019 27812200 -57883554 + MER93a LTR ERV1 136 299 -103 1793 175 10 23 chr15 27812200 27812509 -57883245 - AluJb SINE Alu -7 305 1 614 252 30 88 chr15 27812509 27812589 -57883165 + MER93a LTR ERV1 299 382 -20 205 162 95 95 chr15 27813862 27813936 -57881818 - MIR SINE MIR -75 187 114 225 0 0 0 chr15 27814123 27814148 -57881606 + (CA)n Simple_repeat Simple_repeat 2 26 0 1849 163 3 17 chr15 27814157 27814487 -57881267 + AluJb SINE Alu 1 312 0 573 189 133 66 chr15 27814507 27814703 -57881051 + L2 LINE L2 3104 3312 -1 640 213 37 0 chr15 27814937 27815073 -57880681 + MER3 DNA MER1_type 1 141 -68 24 32 0 0 chr15 27815435 27815466 -57880288 + AT_rich Low_complexity Low_complexity 1 31 0 1704 163 0 20 chr15 27815833 27816128 -57879626 - AluJo SINE Alu -23 289 1 189 0 0 0 chr15 27816516 27816537 -57879217 + (TA)n Simple_repeat Simple_repeat 1 21 0 2504 61 0 0 chr15 27816890 27817186 -57878568 - AluY SINE Alu -15 296 1 190 107 0 0 chr15 27817301 27817329 -57878425 + MIR SINE MIR 30 57 -151 2224 99 3 0 chr15 27817471 27817763 -57877991 - AluSx SINE Alu -19 293 1 794 136 30 15 chr15 27817772 27817904 -57877850 - AluJo SINE Alu -177 135 2 779 57 105 0 chr15 27817963 27818068 -57877686 - L1PB2 LINE L1 -2 6149 6034 2137 92 0 7 chr15 27818312 27818593 -57877161 - AluSg SINE Alu -31 279 1 200 267 100 0 chr15 27819813 27819873 -57875881 + MIR SINE MIR 48 113 -95 2308 93 7 0 chr15 27820525 27820825 -57874929 + AluSq SINE Alu 1 302 -11 929 268 137 33 chr15 27821049 27821534 -57874220 - MLT1H1 LTR MaLR 0 555 14 2019 113 58 0 chr15 27821628 27821920 -57873834 - AluSc SINE Alu 0 309 1 217 289 6 121 chr15 27821974 27822140 -57873614 - MIR SINE MIR -46 216 70 2203 107 13 0 chr15 27822243 27822543 -57873211 - AluSx SINE Alu -8 304 1 1083 145 0 24 chr15 27822544 27822710 -57873044 - AluJb SINE Alu -18 294 133 2017 126 7 3 chr15 27822800 27823101 -57872653 - AluSx SINE Alu -10 302 1 3445 173 67 72 chr15 27823123 27823859 -57871895 - MER44D DNA MER2_type 0 605 2 254 200 17 33 chr15 27824175 27824235 -57871519 + MER5B DNA MER1_type 4 62 -116 832 167 0 35 chr15 27824238 27824382 -57871372 + FLAM_C SINE Alu 2 140 -3 504 239 0 44 chr15 27824395 27824508 -57871246 - MER5B DNA MER1_type -67 111 4 856 146 0 0 chr15 27824915 27825045 -57870709 + AluSg/x SINE Alu 167 296 -16 1005 162 35 61 chr15 27825107 27825304 -57870450 - AluJb SINE Alu -31 281 90 1166 177 22 53 chr15 27825531 27825757 -57869997 + MER20 DNA MER1_type 1 219 0 255 79 0 0 chr15 27825837 27825875 -57869879 + (TG)n Simple_repeat Simple_repeat 2 39 0 2206 107 3 0 chr15 27826351 27826641 -57869113 - AluSq SINE Alu -22 291 1 365 203 0 0 chr15 27826895 27826954 -57868800 - AluJo SINE Alu -129 173 115 582 163 0 0 chr15 27827049 27827135 -57868619 - AluJb SINE Alu -224 88 3 384 237 0 0 chr15 27827224 27827300 -57868454 - MER5C DNA MER1_type -248 76 1 561 219 130 47 chr15 27827311 27827503 -57868251 + MER112 DNA MER1_type 5 212 -48 234 273 18 0 chr15 27827507 27827562 -57868192 + L2 LINE L2 3198 3253 -19 2160 87 31 3 chr15 27827645 27827933 -57867821 + AluSx SINE Alu 1 296 -16 395 345 58 54 chr15 27829006 27829229 -57866525 - L2 LINE L2 -26 3246 3023 2503 70 0 0 chr15 27829536 27829837 -57865917 - AluY SINE Alu -10 301 1 306 0 0 0 chr15 27830037 27830071 -57865683 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1868 115 77 0 chr15 27830074 27830335 -57865419 - AluSx SINE Alu -31 281 1 204 40 0 0 chr15 27830539 27830564 -57865190 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1984 137 0 14 chr15 27830567 27830852 -57864902 - AluSx SINE Alu -31 281 1 1600 161 84 13 chr15 27831170 27831469 -57864285 - MER2 DNA MER2_type -24 321 2 183 383 41 20 chr15 27831784 27831980 -57863774 + L2 LINE L2 2443 2642 -672 1196 108 12 0 chr15 27832431 27832597 -57863157 - AluSq SINE Alu -12 301 134 1541 122 14 0 chr15 27832597 27832818 -57862936 - AluSg/x SINE Alu -4 306 83 21 0 0 0 chr15 27833942 27833963 -57861791 + AT_rich Low_complexity Low_complexity 1 21 0 1856 164 3 7 chr15 27834145 27834443 -57861311 + AluSx SINE Alu 1 297 -15 2238 92 0 3 chr15 27835446 27835769 -57859985 + AluSq SINE Alu 1 322 0 1645 133 31 8 chr15 27835779 27836035 -57859719 + AluSx SINE Alu 35 296 -16 3749 125 2 33 chr15 27836362 27836660 -57859094 - MER1A DNA MER1_type -2173 527 252 2171 112 7 0 chr15 27836660 27836955 -57858799 + AluSq SINE Alu 1 297 -16 3749 125 2 33 chr15 27836955 27837200 -57858554 - MER1A DNA MER1_type -2448 252 1 2289 102 10 0 chr15 27837909 27838213 -57857541 - AluSp SINE Alu -6 307 1 2014 106 19 53 chr15 27838401 27838723 -57857031 + AluSx SINE Alu 2 312 0 1982 110 7 39 chr15 27838977 27839286 -57856468 - AluSg SINE Alu -11 299 1 2267 112 0 0 chr15 27839417 27839721 -57856033 - AluSg SINE Alu -6 304 1 2229 124 0 7 chr15 27840037 27840344 -57855410 - AluSx SINE Alu -7 305 1 1773 175 0 7 chr15 27840698 27840995 -57854759 - AluJb SINE Alu -15 297 3 2494 85 0 0 chr15 27841203 27841509 -57854245 + AluSx SINE Alu 1 306 -6 2294 93 0 23 chr15 27841511 27841813 -57853941 + AluSg SINE Alu 3 297 -13 854 203 0 0 chr15 27842716 27842869 -57852885 - AluJb SINE Alu -23 289 137 1992 148 0 0 chr15 27843182 27843480 -57852274 - AluSx SINE Alu -14 298 1 1222 314 0 119 chr15 27843492 27843836 -57851918 - AluSq SINE Alu 0 303 1 2025 114 7 10 chr15 27844315 27844614 -57851140 - AluSx SINE Alu -14 298 1 26 74 0 0 chr15 27845421 27845475 -57850279 + AT_rich Low_complexity Low_complexity 1 54 0 2264 81 0 17 chr15 27845516 27845811 -57849943 - AluY SINE Alu -21 290 1 2076 79 10 14 chr15 27845999 27846290 -57849464 - AluY SINE Alu -17 294 5 2210 116 3 3 chr15 27846559 27846870 -57848884 - AluSp SINE Alu -2 311 1 1968 135 0 10 chr15 27847225 27847522 -57848232 + AluSx SINE Alu 1 294 -18 905 216 114 13 chr15 27848714 27848950 -57846804 + MIR SINE MIR 3 262 0 908 181 165 42 chr15 27849118 27849427 -57846327 - L1MDa LINE L1 -3427 3113 2767 2099 121 10 7 chr15 27849427 27849733 -57846021 - AluSx SINE Alu -5 307 1 394 197 34 51 chr15 27849738 27849855 -57845899 - L1MDa LINE L1 -4620 1920 1806 206 62 31 0 chr15 27849950 27849982 -57845772 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2150 123 3 13 chr15 27850015 27850324 -57845430 - AluSx SINE Alu -6 306 1 1244 161 29 0 chr15 27850356 27850561 -57845193 - AluJo SINE Alu -18 294 84 312 126 207 11 chr15 27850561 27850648 -57845106 - L1MDa LINE L1 -5108 1422 1319 732 200 0 0 chr15 27850648 27850768 -57844986 - AluJb SINE Alu -15 297 178 1768 158 10 7 chr15 27851030 27851327 -57844427 + AluSx SINE Alu 1 298 -14 2215 126 7 0 chr15 27851590 27851900 -57843854 - AluSx SINE Alu 0 312 1 2242 115 0 7 chr15 27851901 27852205 -57843549 - AluSx SINE Alu -8 304 3 2189 126 7 0 chr15 27852566 27852876 -57842878 - AluSx SINE Alu 0 312 1 2067 116 0 13 chr15 27852889 27853190 -57842564 - AluSg SINE Alu -13 297 1 705 266 86 26 chr15 27853341 27853802 -57841952 + L1ME LINE L1 2 559 -5511 2151 127 0 3 chr15 27854798 27855098 -57840656 + AluSx SINE Alu 1 299 -13 210 315 14 0 chr15 27855281 27855354 -57840400 + MIR3 SINE MIR 105 178 -30 2506 80 0 0 chr15 27855493 27855794 -57839960 - AluSq SINE Alu -12 301 1 2193 132 0 7 chr15 27855795 27856105 -57839649 - AluSx SINE Alu -4 308 1 1825 147 23 42 chr15 27856371 27856494 -57839260 + AluJb SINE Alu 1 125 -187 2192 116 3 0 chr15 27856494 27856788 -57838966 - AluSp SINE Alu -18 295 1 1825 147 23 42 chr15 27856788 27856971 -57838783 + AluJb SINE Alu 125 301 -11 917 240 14 14 chr15 27857370 27857587 -57838167 + MIR SINE MIR 2 218 -44 1860 145 14 3 chr15 27857723 27858005 -57837749 + AluJb SINE Alu 1 285 -27 479 90 154 0 chr15 27858138 27858216 -57837538 + 5S rRNA rRNA 1 90 -31 492 189 82 113 chr15 27858803 27858962 -57836792 - MER58B DNA MER1_type -6 335 182 934 87 0 0 chr15 27859333 27859460 -57836294 + AluY SINE Alu 174 300 -11 790 217 145 4 chr15 27860131 27860366 -57835388 - MER113 DNA MER1_type? -4 517 250 1840 179 3 3 chr15 27860406 27860707 -57835047 - AluJb SINE Alu -11 301 1 2167 126 0 3 chr15 27860731 27861086 -57834668 - AluSx SINE Alu 0 354 1 2115 124 0 23 chr15 27861086 27861393 -57834361 - AluSx SINE Alu -12 300 1 1831 65 4 4 chr15 27861399 27861631 -57834123 - L1PA14 LINE L1 -2 6159 5928 1461 237 46 20 chr15 27861633 27862026 -57833728 - L1ME3A LINE L1 0 6170 5768 377 271 63 5 chr15 27862029 27862236 -57833518 - MER113 DNA MER1_type? -302 219 1 2247 100 3 3 chr15 27862682 27862983 -57832771 - AluSx SINE Alu -11 301 1 693 246 143 21 chr15 27862984 27863453 -57832301 - L2 LINE L2 -8 3305 2775 2377 78 17 0 chr15 27863453 27863748 -57832006 - AluSx SINE Alu -12 300 1 861 219 142 5 chr15 27863839 27864058 -57831696 + MIR SINE MIR 8 256 -6 2307 97 0 0 chr15 27864753 27865051 -57830703 - AluSx SINE Alu -14 298 1 2350 73 0 7 chr15 27865164 27865466 -57830288 + AluY SINE Alu 1 300 -11 2084 124 3 0 chr15 27865479 27865762 -57829992 + AluSp SINE Alu 1 284 -29 1604 171 8 0 chr15 27866220 27866483 -57829271 + MER2 DNA MER2_type 1 265 -80 1805 143 13 29 chr15 27866509 27866824 -57828930 - AluJo SINE Alu -1 311 2 183 42 0 0 chr15 27866851 27866875 -57828879 + (TTTAA)n Simple_repeat Simple_repeat 2 25 0 1119 134 0 6 chr15 27866875 27867034 -57828720 - AluSg/x SINE Alu -26 284 127 1290 184 86 8 chr15 27867043 27867189 -57828565 - AluJb SINE Alu -24 288 155 180 0 0 0 chr15 27867189 27867209 -57828545 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1290 184 86 8 chr15 27867209 27867329 -57828425 - AluJb SINE Alu -157 155 1 266 207 62 0 chr15 27867337 27867409 -57828345 + L1ME LINE L1 5471 5546 -787 283 205 0 77 chr15 27867506 27867584 -57828170 + MER116 DNA Mariner 9 80 0 291 335 48 5 chr15 27867585 27867791 -57827963 + L1MC/D LINE L1 4840 5054 -1092 2094 116 3 0 chr15 27867853 27868145 -57827609 + AluSq SINE Alu 1 293 -20 382 269 154 29 chr15 27868162 27868592 -57827162 + L1MC/D LINE L1 5189 5689 -500 261 207 0 0 chr15 27868573 27868631 -57827123 - L1MC4 LINE L1 -1339 6703 6646 * 1847 144 10 7 chr15 27868636 27868928 -57826826 - AluSq SINE Alu -20 293 1 248 289 16 58 chr15 27869461 27869582 -57826172 + AluJo/FLAM SINE Alu 17 132 -170 2365 73 0 3 chr15 27869582 27869869 -57825885 - AluSc SINE Alu -23 286 1 23 0 0 0 chr15 27869869 27869892 -57825862 + AT_rich Low_complexity Low_complexity 1 23 0 370 269 108 54 chr15 27869908 27870075 -57825679 + L1ME LINE L1 5577 5752 -369 1662 162 14 7 chr15 27870116 27870394 -57825360 + AluJb SINE Alu 1 280 -32 2115 124 7 3 chr15 27871524 27871822 -57823932 + AluSx SINE Alu 1 299 -13 2132 120 10 0 chr15 27872739 27873039 -57822715 + AluSx SINE Alu 1 303 -9 209 336 142 26 chr15 27873159 27873509 -57822245 - L2 LINE L2 -182 3090 2698 2171 121 3 7 chr15 27873719 27874026 -57821728 - AluJb SINE Alu -5 307 2 313 374 10 87 chr15 27874338 27874533 -57821221 - L2 LINE L2 -85 3187 3008 363 285 217 35 chr15 27874647 27875016 -57820738 - L2 LINE L2 -481 2833 2398 316 335 0 19 chr15 27875699 27875908 -57819846 + GA-rich Low_complexity Low_complexity 1 205 0 2209 111 0 0 chr15 27877242 27877540 -57818214 + AluY SINE Alu 1 298 -13 3360 134 47 2 chr15 27878348 27878877 -57816877 + L1MB2 LINE L1 5612 6164 -7 2137 68 60 18 chr15 27878911 27879192 -57816562 + AluY SINE Alu 2 294 -17 562 175 113 127 chr15 27879223 27879468 -57816286 - L1MB7 LINE L1 -20 6164 5922 1918 167 62 0 chr15 27879468 27879791 -57815963 + MER2 DNA MER2_type 1 343 -1 276 185 0 37 chr15 27879867 27879921 -57815833 + FLAM SINE Alu 73 124 -9 1783 156 0 20 chr15 27879934 27880236 -57815518 + AluJb SINE Alu 5 300 -12 1045 95 89 68 chr15 27880450 27880580 -57815174 + L1PB1 LINE L1 5958 6095 -56 2057 122 31 0 chr15 27880580 27880868 -57814886 + AluSx SINE Alu 1 297 -15 1045 95 89 68 chr15 27880868 27880927 -57814827 + L1PB1 LINE L1 6095 6151 0 189 0 0 0 chr15 27881092 27881113 -57814641 + (GA)n Simple_repeat Simple_repeat 2 22 0 242 273 18 0 chr15 27881533 27881588 -57814166 - L2 LINE L2 -19 3253 3198 621 239 8 0 chr15 27881629 27881746 -57814008 + FLAM_A SINE Alu 2 119 -14 1160 190 87 30 chr15 27881762 27882062 -57813692 - L1M4 LINE L1 -912 5234 4918 975 158 25 116 chr15 27882141 27882282 -57813472 - AluJo SINE Alu -53 259 155 2236 103 3 28 chr15 27882282 27882602 -57813152 - AluSx SINE Alu 0 312 1 975 158 25 116 chr15 27882602 27882745 -57813009 - AluJo SINE Alu -157 155 1 180 97 0 0 chr15 27883404 27883435 -57812319 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 460 185 160 42 chr15 27885407 27885512 -57810242 + MER3 DNA MER1_type 1 123 -39 2085 115 28 0 chr15 27885512 27885798 -57809956 - AluSx SINE Alu -18 294 1 460 185 160 42 chr15 27885798 27885811 -57809943 + MER3 DNA MER1_type 123 133 -76 186 43 0 0 chr15 27885920 27885943 -57809811 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 856 182 182 84 chr15 27886613 27886921 -57808833 - MSTD LTR MaLR 0 396 28 1722 166 32 14 chr15 27887110 27887393 -57808361 + AluJb SINE Alu 1 288 -24 1834 144 3 39 chr15 27888372 27888677 -57807077 + AluSx SINE Alu 1 294 -18 269 250 23 0 chr15 27888875 27888963 -57806791 - L1MC4 LINE L1 -1339 6703 6614 210 143 0 0 chr15 27888963 27888998 -57806756 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 809 162 0 74 chr15 27889092 27889240 -57806514 - FLAM_C SINE Alu -5 138 2 777 93 0 34 chr15 27889839 27889957 -57805797 + AluY SINE Alu 2 115 -196 23 152 0 0 chr15 27889987 27890020 -57805734 + GC_rich Low_complexity Low_complexity 1 33 0 1760 160 0 47 chr15 27892775 27893075 -57802679 + AluJb SINE Alu 1 286 -26 1560 224 43 0 chr15 27893349 27893675 -57802079 + MER58B DNA MER1_type 2 341 0 1927 85 8 15 chr15 27893710 27893969 -57801785 - AluY SINE Alu -19 292 36 2205 115 0 3 chr15 27893971 27894267 -57801487 - AluSx SINE Alu -17 295 1 670 250 0 0 chr15 27894269 27894393 -57801361 - FLAM_A SINE Alu -8 125 2 256 217 17 17 chr15 27894449 27894509 -57801245 + MIR SINE MIR 84 143 -119 1960 112 12 0 chr15 27894664 27894922 -57800832 + AluSx SINE Alu 2 262 -50 1552 293 110 24 chr15 27894945 27895538 -57800216 + L1MEd LINE L1 177 820 -5299 1144 157 5 81 chr15 27895976 27896094 -57799660 - MER2 DNA MER2_type -139 206 111 1759 177 10 3 chr15 27896094 27896393 -57799361 + AluJb SINE Alu 1 301 -11 1144 157 5 81 chr15 27896393 27896497 -57799257 - MER2 DNA MER2_type -234 111 1 553 275 140 24 chr15 27896500 27896549 -57799205 + L1MEd LINE L1 996 1038 -1452 2235 111 0 13 chr15 27896549 27896856 -57798898 + AluSg SINE Alu 1 303 -7 553 275 140 24 chr15 27896856 27897327 -57798427 + L1MEd LINE L1 1038 1627 -863 1901 143 10 14 chr15 27897528 27897821 -57797933 + AluJo SINE Alu 1 292 -20 1736 119 61 73 chr15 27898055 27898398 -57797356 + MER1B DNA MER1_type 1 339 0 856 66 0 0 chr15 27898677 27898783 -57796971 + AluY SINE Alu 206 311 0 2135 136 0 0 chr15 27898796 27899104 -57796650 + AluSx SINE Alu 1 308 -4 555 128 81 0 chr15 27899147 27899233 -57796521 - MER46A DNA MER2_type -143 93 1 314 295 171 12 chr15 27899246 27899497 -57796257 + L1ME3 LINE L1 2546 2836 -3546 2326 92 0 3 chr15 27899584 27899890 -57795864 + AluSg SINE Alu 1 305 -5 322 183 166 35 chr15 27899913 27900082 -57795672 + L1ME3 LINE L1 3025 3215 -3167 347 293 68 54 chr15 27900280 27900511 -57795243 + L1ME3 LINE L1 3231 3457 -2925 1714 151 7 47 chr15 27900511 27900648 -57795106 + AluJb SINE Alu 1 142 -170 2636 45 3 0 chr15 27900648 27900956 -57794798 + AluY SINE Alu 1 309 -2 1714 151 7 47 chr15 27900956 27901117 -57794637 + AluJb SINE Alu 142 287 -25 347 293 68 54 chr15 27901117 27901165 -57794589 + L1ME3 LINE L1 3457 3503 -2879 2257 64 14 4 chr15 27901165 27901474 -57794280 + AluY SINE Alu 1 312 0 347 293 68 54 chr15 27901474 27901676 -57794078 + L1ME3 LINE L1 3503 3721 -2661 35 41 0 0 chr15 27901818 27901867 -57793887 + AT_rich Low_complexity Low_complexity 1 49 0 309 260 146 7 chr15 27901973 27902178 -57793576 + L1ME3 LINE L1 5152 5397 -985 2550 46 0 7 chr15 27902566 27902873 -57792881 - AluY SINE Alu -6 305 1 3679 147 29 78 chr15 27902953 27903510 -57792244 + L1MB7 LINE L1 5378 5961 -223 1691 166 13 10 chr15 27903510 27903811 -57791943 + AluJb SINE Alu 1 302 -10 3679 147 29 78 chr15 27903811 27903860 -57791894 + L1MB7 LINE L1 5961 6011 -173 1847 127 76 0 chr15 27903860 27904135 -57791619 + AluSx SINE Alu 1 296 -16 3679 147 29 78 chr15 27904135 27904301 -57791453 + L1MB7 LINE L1 6011 6111 -73 2150 114 6 19 chr15 27904301 27904617 -57791137 + AluSx SINE Alu 1 312 0 3679 147 29 78 chr15 27904617 27904666 -57791088 + L1MB7 LINE L1 6111 6161 -23 252 173 101 59 chr15 27904712 27904859 -57790895 + L1ME3 LINE L1 5438 5596 -797 503 274 139 20 chr15 27904955 27905200 -57790554 + L1ME3 LINE L1 5831 6104 -294 649 147 138 0 chr15 27905214 27905330 -57790424 + FLAM_C SINE Alu 2 133 0 2842 228 68 22 chr15 27905378 27906201 -57789553 + L1ME3A LINE L1 5262 6160 -10 1373 198 10 32 chr15 27906211 27906331 -57789423 + AluJb SINE Alu 1 122 -190 2210 89 10 7 chr15 27906331 27906623 -57789131 - AluSc SINE Alu -16 293 1 1373 198 10 32 chr15 27906623 27906810 -57788944 + AluJb SINE Alu 122 301 -11 454 228 68 117 chr15 27906829 27907032 -57788722 + L1M4 LINE L1 3440 3626 -2520 2277 82 0 0 chr15 27907032 27907335 -57788419 - AluSx SINE Alu 0 305 3 454 228 68 117 chr15 27907335 27907437 -57788317 + L1M4 LINE L1 3626 3731 -2415 246 62 0 0 chr15 27907437 27907469 -57788285 + (TA)n Simple_repeat Simple_repeat 2 33 0 277 239 64 45 chr15 27907586 27907758 -57787996 + L1MC/D LINE L1 5659 5835 -335 633 229 149 16 chr15 27907778 27908093 -57787661 + L1M4c LINE L1 2041 2397 -3987 189 0 0 0 chr15 27908094 27908115 -57787639 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2069 96 3 58 chr15 27908116 27908428 -57787326 + AluSg SINE Alu 2 296 -14 3106 216 41 35 chr15 27908431 27908545 -57787209 + L1M4c LINE L1 2449 2561 -3821 216 0 0 0 chr15 27908545 27908569 -57787185 + (TA)n Simple_repeat Simple_repeat 1 24 0 3106 216 41 35 chr15 27908569 27908984 -57786770 + L1M4c LINE L1 2561 2972 -3410 2191 125 0 3 chr15 27908984 27909281 -57786473 + AluSq SINE Alu 1 296 -17 3106 216 41 35 chr15 27909281 27909510 -57786244 + L1M4c LINE L1 2972 3216 -3166 1558 183 74 0 chr15 27909510 27909795 -57785959 - AluJb SINE Alu -6 306 1 3106 216 41 35 chr15 27909795 27909858 -57785896 + L1M4c LINE L1 3216 3277 -3105 * 3692 124 23 69 chr15 27909846 27910005 -57785749 + L1MA4 LINE L1 4697 4862 -1441 2299 73 40 10 chr15 27910005 27910306 -57785448 - AluY SINE Alu -1 310 1 3692 124 23 69 chr15 27910306 27910800 -57784954 + L1MA4 LINE L1 4862 5377 -926 2006 145 0 0 chr15 27910800 27911089 -57784665 + AluSx SINE Alu 1 289 -23 3692 124 23 69 chr15 27911089 27911228 -57784526 + L1MA4 LINE L1 5377 5430 -873 2368 58 0 10 chr15 27911228 27911523 -57784231 + AluY SINE Alu 1 292 -19 3692 124 23 69 chr15 27911523 27911704 -57784050 + L1MA4 LINE L1 5430 5618 -685 681 103 37 9 chr15 27911805 27911912 -57783842 + L1MA4 LINE L1 5623 5732 -571 1397 181 0 30 chr15 27911929 27912199 -57783555 + AluJo SINE Alu 15 276 -36 2012 136 7 3 chr15 27912199 27912493 -57783261 - AluJb SINE Alu -17 295 1 2641 127 58 62 chr15 27912527 27912933 -57782821 + L1MA4 LINE L1 5796 6201 -99 2089 133 3 0 chr15 27912933 27913235 -57782519 - AluSq SINE Alu -10 303 1 2641 127 58 62 chr15 27913235 27913332 -57782422 + L1MA4 LINE L1 6201 6297 -3 1688 166 93 2 chr15 27913338 27913574 -57782180 + L1M4c LINE L1 3264 3477 -2905 2060 148 0 3 chr15 27913574 27913877 -57781877 + AluSx SINE Alu 1 302 -10 1688 166 93 2 chr15 27913877 27914038 -57781716 + L1M4c LINE L1 3477 3697 -2685 816 173 8 0 chr15 27914038 27914165 -57781589 + FLAM_C SINE Alu 2 129 -14 1103 153 59 5 chr15 27915510 27915712 -57780042 + AluJo SINE Alu 83 295 -17 408 196 170 0 chr15 27915971 27916083 -57779671 + MIR SINE MIR 90 220 -42 1925 143 4 0 chr15 27916193 27916472 -57779282 - AluSx SINE Alu -24 288 9 1362 185 10 53 chr15 27916539 27916842 -57778912 - AluJo SINE Alu -22 290 1 2191 85 0 4 chr15 27917006 27917287 -57778467 + AluSx SINE Alu 28 307 -5 1685 141 81 25 chr15 27917799 27918082 -57777672 + AluJo SINE Alu 1 299 -13 1990 109 18 3 chr15 27918091 27918375 -57777379 + AluSq SINE Alu 9 296 -17 2150 103 14 3 chr15 27918382 27918674 -57777080 + AluSg SINE Alu 1 295 -15 1311 175 78 45 chr15 27918709 27919017 -57776737 + MLT1A2 LTR MaLR 57 374 0 2139 124 3 0 chr15 27919285 27919584 -57776170 + AluSx SINE Alu 2 301 -11 2066 135 0 13 chr15 27919589 27919893 -57775861 + AluSx SINE Alu 1 300 -12 2042 135 14 3 chr15 27920107 27920403 -57775351 + AluSx SINE Alu 3 301 -11 1690 156 21 17 chr15 27920489 27920777 -57774977 + AluSx SINE Alu 1 289 -23 414 198 130 51 chr15 27920805 27920982 -57774772 + L1MC5 LINE L1 7722 7912 -49 226 191 257 38 chr15 27921165 27921270 -57774484 - MIR SINE MIR -49 213 86 2099 136 0 0 chr15 27921284 27921579 -57774175 + AluSx SINE Alu 1 295 -17 2092 103 10 7 chr15 27922637 27922928 -57772826 + AluSg SINE Alu 1 292 -18 2213 98 0 14 chr15 27923019 27923316 -57772438 + AluSc SINE Alu 1 293 -16 318 207 15 111 chr15 27923386 27923521 -57772233 + L1MC4a LINE L1 5813 5934 -1874 552 319 87 9 chr15 27924178 27924407 -57771347 + MIR SINE MIR 4 250 -12 2329 80 13 3 chr15 27924519 27924819 -57770935 + AluY SINE Alu 1 303 -8 2290 114 0 0 chr15 27925180 27925478 -57770276 - AluSx SINE Alu -14 298 1 2258 108 3 10 chr15 27925552 27925866 -57769888 - AluSq SINE Alu -1 312 1 591 180 0 0 chr15 27925988 27926077 -57769677 - AluJ/FLAM SINE Alu -222 90 2 2133 119 3 7 chr15 27926080 27926409 -57769345 - AluSx SINE Alu 0 312 1 885 170 0 0 chr15 27926414 27926555 -57769199 - FLAM_A SINE Alu 0 142 2 272 270 78 26 chr15 27927233 27927348 -57768406 - L2 LINE L2 -864 2450 2330 196 301 86 31 chr15 27927350 27927513 -57768241 - L2 LINE L2 -1422 1892 1721 304 246 59 25 chr15 27928014 27928132 -57767622 + L1M4 LINE L1 5022 5143 -1003 1632 166 42 7 chr15 27928150 27928439 -57767315 + AluJo SINE Alu 1 299 -13 1895 127 0 0 chr15 27928493 27928746 -57767008 + AluSq SINE Alu 1 253 -60 6867 148 212 10 chr15 27928864 27929177 -57766577 + L1MA7 LINE L1 3435 3684 -2607 1960 122 56 11 chr15 27929177 27929464 -57766290 - AluSx SINE Alu -12 300 1 6867 148 212 10 chr15 27929464 27929692 -57766062 + L1MA7 LINE L1 3684 3865 -2426 1884 145 30 10 chr15 27929692 27929989 -57765765 - AluJo SINE Alu -9 303 1 6867 148 212 10 chr15 27929989 27931227 -57764527 + L1MA7 LINE L1 3865 5588 -703 1062 186 0 0 chr15 27931236 27931419 -57764335 + FRAM SINE Alu 1 175 -1 3189 134 93 5 chr15 27931421 27931980 -57763774 + L1MA7 LINE L1 5611 6218 -73 471 185 0 0 chr15 27931981 27932073 -57763681 + (TATATG)n Simple_repeat Simple_repeat 1 92 0 1058 135 6 0 chr15 27932073 27932251 -57763503 + (TA)n Simple_repeat Simple_repeat 1 179 0 350 139 0 14 chr15 27932251 27932323 -57763431 + L1MA7 LINE L1 6219 6289 -2 851 111 0 0 chr15 27932717 27932834 -57762920 + AluSg/x SINE Alu 185 301 -11 1617 219 61 39 chr15 27932839 27933382 -57762372 - L1M4 LINE L1 -3418 2728 2174 1899 111 63 0 chr15 27933386 27933656 -57762098 + AluSx SINE Alu 7 293 -19 24 32 0 0 chr15 27933840 27933871 -57761883 + AT_rich Low_complexity Low_complexity 1 31 0 30 0 0 0 chr15 27933947 27933977 -57761777 + AT_rich Low_complexity Low_complexity 1 30 0 437 197 13 0 chr15 27934033 27934109 -57761645 + L1PA8A LINE L1 6048 6124 -7 488 282 181 87 chr15 27934175 27934342 -57761412 + L2 LINE L2 2137 2287 -1027 242 88 59 0 chr15 27934342 27934442 -57761312 - Alu SINE Alu 0 350 249 1140 124 159 15 chr15 27934442 27934495 -57761259 + MER30 DNA MER1_type 1 45 -185 1768 171 7 7 chr15 27934495 27934793 -57760961 + AluSx SINE Alu 1 298 -14 1140 124 159 15 chr15 27934793 27934940 -57760814 + MER30 DNA MER1_type 45 230 0 488 282 181 87 chr15 27934940 27935301 -57760453 + L2 LINE L2 2286 2753 -561 999 228 56 0 chr15 27935354 27935551 -57760203 - MER58A DNA MER1_type -4 220 13 244 349 9 28 chr15 27935563 27935669 -57760085 + L2 LINE L2 2821 2924 -389 1801 165 0 3 chr15 27936102 27936393 -57759361 - AluJb SINE Alu -22 290 1 187 268 295 0 chr15 27936491 27936603 -57759151 + L3 LINE CR1 1160 1304 -273 333 211 56 44 chr15 27936660 27936750 -57759004 + L3 LINE CR1 1305 1395 -182 1114 204 21 16 chr15 27936753 27937004 -57758750 + MIR SINE MIR 4 255 -7 256 216 162 27 chr15 27937012 27937123 -57758631 + L3 LINE CR1 1382 1507 -70 385 192 224 83 chr15 27937145 27937236 -57758518 - MER5A DNA MER1_type -3 186 109 2375 86 0 16 chr15 27937236 27937540 -57758214 - AluSc SINE Alu -10 299 1 385 192 224 83 chr15 27937540 27937604 -57758150 - MER5A DNA MER1_type -80 109 9 2179 112 16 7 chr15 27937665 27937970 -57757784 - AluSx SINE Alu -4 308 1 950 133 0 15 chr15 27938105 27938240 -57757514 - FLAM_C SINE Alu 0 133 1 837 205 0 48 chr15 27938314 27938480 -57757274 - FRAM SINE Alu -8 158 1 21 0 0 0 chr15 27938480 27938501 -57757253 + AT_rich Low_complexity Low_complexity 1 21 0 1351 149 112 45 chr15 27939261 27939530 -57756224 + AluJb SINE Alu 1 287 -25 1656 146 94 4 chr15 27940058 27940325 -57755429 + AluJb SINE Alu 1 291 -21 2294 101 3 7 chr15 27940334 27940641 -57755113 + AluSx SINE Alu 1 306 -6 191 191 48 0 chr15 27941058 27941100 -57754654 + MER5B DNA MER1_type 12 55 -123 265 203 95 0 chr15 27941115 27941189 -57754565 + L1MC4 LINE L1 6824 6904 -1138 * 1908 230 91 10 chr15 27941172 27941725 -57754029 + L1ME1 LINE L1 5566 6161 -5 409 169 14 0 chr15 27941737 27941808 -57753946 + L1MC4 LINE L1 6944 7015 -1027 * 10260 154 92 76 chr15 27941804 27943056 -57752698 + L1MCa LINE L1 17 1248 -5178 794 139 9 0 chr15 27943056 27943171 -57752583 + FLAM_C SINE Alu 1 116 -17 10260 154 92 76 chr15 27943171 27943750 -57752004 + L1MCa LINE L1 1248 1816 -4610 2101 111 3 10 chr15 27943750 27944047 -57751707 + AluSx SINE Alu 1 295 -17 10260 154 92 76 chr15 27944047 27944891 -57750863 + L1MCa LINE L1 1816 2645 -3781 1938 137 7 0 chr15 27944891 27945168 -57750586 + AluSx SINE Alu 1 279 -33 270 0 0 0 chr15 27945168 27945198 -57750556 + (CA)n Simple_repeat Simple_repeat 1 30 0 10260 154 92 76 chr15 27945198 27945663 -57750091 + L1MCa LINE L1 2644 3206 -3220 1039 133 0 13 chr15 27945664 27945814 -57749940 + AluJo SINE Alu 1 148 -164 5156 211 32 44 chr15 27945828 27946391 -57749363 + L1M4 LINE L1 3805 4373 -1773 2222 118 0 0 chr15 27946391 27946680 -57749074 + AluSx SINE Alu 1 289 -23 5156 211 32 44 chr15 27946680 27947608 -57748146 + L1M4 LINE L1 4373 5279 -867 2273 99 0 3 chr15 27947609 27947903 -57747851 + AluSx SINE Alu 1 293 -19 243 228 43 54 chr15 27948100 27948192 -57747562 - L1MEd LINE L1 -4868 1251 1161 566 239 143 75 chr15 27948215 27948367 -57747387 - L1MEd LINE L1 -5020 1099 959 1985 126 14 0 chr15 27948367 27948652 -57747102 - AluSx SINE Alu -23 289 1 566 239 143 75 chr15 27948652 27948955 -57746799 - L1MEd LINE L1 -5160 959 613 21 0 0 0 chr15 27949560 27949581 -57746173 + AT_rich Low_complexity Low_complexity 1 21 0 2199 111 10 0 chr15 27949969 27950267 -57745487 - AluSp SINE Alu -12 301 1 411 240 0 10 chr15 27950336 27950436 -57745318 - L1MC/D LINE L1 -2021 5787 5689 312 342 45 7 chr15 27950577 27950732 -57745022 + HAL1 LINE L1 1791 1951 -556 413 257 27 60 chr15 27950766 27950949 -57744805 + HAL1 LINE L1 2153 2329 -178 956 139 77 52 chr15 27950964 27951158 -57744596 - MER46A DNA MER2_type -10 226 28 1132 132 0 39 chr15 27951254 27951436 -57744318 - AluSg/x SINE Alu -4 308 134 2691 38 0 6 chr15 27951436 27951752 -57744002 - AluYb8 SINE Alu 0 318 5 734 235 268 9 chr15 27951760 27952088 -57743666 - L1M4 LINE L1 -1983 4163 3751 21 0 0 0 chr15 27953105 27953126 -57742628 + AT_rich Low_complexity Low_complexity 1 21 0 2271 105 3 0 chr15 27953132 27953438 -57742316 + AluSc SINE Alu 3 309 0 1902 119 16 16 chr15 27955434 27955744 -57740010 + AluSx SINE Alu 3 312 0 2161 119 23 0 chr15 27956241 27956544 -57739210 - AluSg SINE Alu 0 310 1 304 225 0 42 chr15 27957046 27957117 -57738637 + AluSg/x SINE Alu 118 185 -115 232 87 0 43 chr15 27957550 27957596 -57738158 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 2199 92 3 23 chr15 27957602 27957906 -57737848 - AluSg SINE Alu -12 298 1 183 278 111 0 chr15 27957943 27957997 -57737757 - MIR3 SINE MIR -54 154 95 2343 95 7 0 chr15 27958191 27958486 -57737268 - AluSx SINE Alu -14 298 2 820 267 51 5 chr15 27958813 27959008 -57736746 - MIR SINE MIR -49 213 10 2146 127 3 0 chr15 27959272 27959572 -57736182 + AluSx SINE Alu 1 301 -11 317 0 70 0 chr15 27960306 27960349 -57735405 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2222 82 3 40 chr15 27960402 27960706 -57735048 - AluSx SINE Alu -19 293 1 2404 83 0 10 chr15 27963308 27963620 -57732134 - AluY SINE Alu -2 309 1 2058 111 3 49 chr15 27963625 27963792 -57731962 - AluSx SINE Alu -19 293 145 2362 84 3 0 chr15 27963792 27964088 -57731666 - AluSx SINE Alu -15 297 1 2058 111 3 49 chr15 27964088 27964227 -57731527 - AluSx SINE Alu -167 145 1 1287 191 0 4 chr15 27964395 27964620 -57731134 + AluJb SINE Alu 85 308 -4 635 182 78 52 chr15 27964828 27964982 -57730772 + FRAM SINE Alu 1 158 -8 275 260 154 16 chr15 27965490 27965613 -57730141 - MIR3 SINE MIR -58 150 11 21 71 0 0 chr15 27966089 27966131 -57729623 + AT_rich Low_complexity Low_complexity 1 42 0 2290 100 0 3 chr15 27966238 27966539 -57729215 + AluSg SINE Alu 1 300 -10 2244 113 0 19 chr15 27966619 27966937 -57728817 + AluSx SINE Alu 1 312 0 711 186 0 8 chr15 27966945 27967069 -57728685 + FLAM_C SINE Alu 1 123 -20 1028 169 46 18 chr15 27967086 27967305 -57728449 + L1PB4 LINE L1 5932 6156 0 592 246 56 15 chr15 27967329 27967524 -57728230 + L1ME1 LINE L1 5959 6161 -5 1129 148 0 12 chr15 27967768 27967937 -57727817 - AluSg/x SINE Alu -18 292 126 593 199 15 0 chr15 27968345 27968476 -57727278 - L1MC4a LINE L1 -1813 5995 5863 * 5199 139 50 48 chr15 27968473 27969803 -57725951 + L1MA3 LINE L1 4976 6305 0 2134 110 10 7 chr15 27969877 27970178 -57725576 - AluSp SINE Alu -10 303 2 637 231 47 6 chr15 27970179 27970348 -57725406 - L1ME1 LINE L1 -261 5905 5730 186 43 0 0 chr15 27970352 27970375 -57725379 + (TC)n Simple_repeat Simple_repeat 1 23 0 305 241 72 0 chr15 27970375 27970458 -57725296 - L1MC4a LINE L1 -1948 5860 5772 435 119 0 0 chr15 27970474 27970541 -57725213 + (CA)n Simple_repeat Simple_repeat 2 68 0 2288 41 0 58 chr15 27970543 27970834 -57724920 - AluSp SINE Alu -23 290 17 1021 137 47 21 chr15 27971339 27971529 -57724225 + MER3 DNA MER1_type 8 202 -7 1869 135 20 33 chr15 27971881 27972185 -57723569 - AluSx SINE Alu -12 300 1 1365 132 0 0 chr15 27972434 27972623 -57723131 - AluSg/x SINE Alu -20 292 104 844 161 6 29 chr15 27972872 27973046 -57722708 + AluSg/x SINE Alu 128 297 -13 465 266 8 8 chr15 27973357 27973481 -57722273 - MER94 DNA DNA -7 127 4 1561 205 0 3 chr15 27973692 27973985 -57721769 - AluJo SINE Alu -2 310 19 23 0 0 0 chr15 27973992 27974015 -57721739 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr15 27974288 27974318 -57721436 + AT_rich Low_complexity Low_complexity 1 30 0 2179 120 3 0 chr15 27975213 27975514 -57720240 + AluSg SINE Alu 1 302 -8 31 0 0 0 chr15 27977012 27977043 -57718711 + AT_rich Low_complexity Low_complexity 1 31 0 243 259 65 43 chr15 27977060 27977124 -57718630 + L1ME4a LINE L1 5379 5440 -681 1543 175 34 10 chr15 27977124 27977415 -57718339 + AluJo SINE Alu 1 298 -14 243 259 65 43 chr15 27977415 27977489 -57718265 + L1ME4a LINE L1 5440 5520 -601 287 266 121 28 chr15 27977618 27977783 -57717971 + L1ME4a LINE L1 5736 5933 -188 1843 151 16 16 chr15 27977783 27978087 -57717667 + AluSx SINE Alu 1 304 -8 287 266 121 28 chr15 27978087 27978169 -57717585 + L1ME4a LINE L1 5933 6006 -115 2066 105 4 0 chr15 27978959 27979236 -57716518 - AluSg SINE Alu -16 294 17 1913 150 0 26 chr15 27979833 27980140 -57715614 + AluSx SINE Alu 1 299 -13 409 258 13 66 chr15 27980754 27980905 -57714849 + MLT1L LTR MaLR 136 278 -337 279 244 47 63 chr15 27981023 27981150 -57714604 + MLT1L LTR MaLR 483 607 -8 890 239 108 33 chr15 27981757 27982063 -57713691 + Charlie2 DNA MER1_type 1 329 -2453 * 934 213 42 82 chr15 27982055 27982361 -57713393 + Charlie2 DNA MER1_type 1856 2142 -720 2285 101 0 0 chr15 27982361 27982657 -57713097 + AluSx SINE Alu 3 298 -14 934 213 42 82 chr15 27982657 27982778 -57712976 + Charlie2 DNA MER1_type 2142 2266 -596 21 0 0 0 chr15 27983497 27983518 -57712236 + AT_rich Low_complexity Low_complexity 1 21 0 2224 89 0 0 chr15 27983568 27983873 -57711881 + AluSg SINE Alu 3 307 0 620 63 0 0 chr15 27983969 27984048 -57711706 + MADE1 DNA Mariner 1 79 -1 4033 55 0 0 chr15 27984202 27984691 -57711063 + L1PA6 LINE L1 5607 6095 -59 282 392 48 16 chr15 27984813 27984938 -57710816 + L2 LINE L2 3123 3251 -21 21 0 0 0 chr15 27985409 27985430 -57710324 + AT_rich Low_complexity Low_complexity 1 21 0 3283 40 26 17 chr15 27985521 27985943 -57709811 - L1PA5 LINE L1 0 6154 5729 2334 96 7 0 chr15 27986495 27986798 -57708956 + AluSx SINE Alu 1 305 -7 688 112 0 0 chr15 27987465 27987563 -57708191 - AluSg/x SINE Alu -22 287 190 2229 102 13 0 chr15 27988303 27988606 -57707148 + AluSg SINE Alu 1 307 -3 286 164 16 16 chr15 27988624 27988685 -57707069 + L1MB4 LINE L1 5296 5356 -977 765 150 65 40 chr15 27988689 27988889 -57706865 + L1MB4 LINE L1 5975 6179 -1 450 153 12 0 chr15 27988898 27988983 -57706771 + L1MB8 LINE L1 6093 6178 0 1484 112 5 0 chr15 27989404 27989609 -57706145 - AluSg/x SINE Alu 0 310 105 390 175 0 16 chr15 27989609 27989672 -57706082 - AluS SINE Alu -238 62 1 2194 90 7 0 chr15 27989731 27990020 -57705734 - AluSc SINE Alu -18 291 1 2071 129 0 0 chr15 27990925 27991228 -57704526 - AluSx SINE Alu 0 305 3 1275 169 0 5 chr15 27991628 27991835 -57703919 + AluJb SINE Alu 93 298 -14 505 172 125 86 chr15 27992239 27992367 -57703387 + AluJ SINE Alu 1 133 -169 2290 115 0 0 chr15 27992781 27993093 -57702661 - AluSx SINE Alu 0 312 1 233 309 31 10 chr15 27993642 27993739 -57702015 + MER5A DNA MER1_type 89 187 -2 228 211 154 0 chr15 27993780 27993832 -57701922 + L2 LINE L2 3253 3312 -1 785 190 13 32 chr15 27994189 27994347 -57701407 + AluJ SINE Alu 140 294 -18 1958 97 0 117 chr15 27994351 27994703 -57701051 + AluSx SINE Alu 2 312 0 816 144 0 0 chr15 27995260 27995378 -57700376 + FLAM_C SINE Alu 1 118 -25 22 35 0 0 chr15 27995382 27995411 -57700343 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr15 27995515 27995544 -57700210 + AT_rich Low_complexity Low_complexity 1 29 0 396 246 62 39 chr15 27995546 27995676 -57700078 - MIR SINE MIR -2 260 128 235 140 0 35 chr15 27995846 27995903 -57699851 + (TA)n Simple_repeat Simple_repeat 2 56 0 267 298 12 0 chr15 27995936 27996020 -57699734 + (TA)n Simple_repeat Simple_repeat 1 85 0 481 299 136 6 chr15 27996031 27996208 -57699546 + MIR SINE MIR 20 219 -43 1023 207 42 92 chr15 27997408 27997765 -57697989 + L1MC4 LINE L1 7687 8025 -17 2397 68 13 10 chr15 27997776 27998086 -57697668 + AluY SINE Alu 1 311 0 225 189 40 54 chr15 27998106 27998180 -57697574 + L1MC/D LINE L1 5840 5912 -1896 233 293 49 0 chr15 27998461 27998543 -57697211 - L1M4 LINE L1 -1778 4368 4283 889 116 0 36 chr15 27998560 27998698 -57697056 - FLAM_C SINE Alu -10 133 1 417 256 198 60 chr15 27998698 27999202 -57696552 - L1M4 LINE L1 -1861 4285 3712 745 142 0 0 chr15 27999274 27999380 -57696374 + AluJ SINE Alu 2 107 -205 191 62 62 0 chr15 27999384 27999416 -57696338 + C-rich Low_complexity Low_complexity 3 36 0 1023 174 22 27 chr15 27999426 27999610 -57696144 + AluJ SINE Alu 108 290 -22 1902 146 7 14 chr15 27999617 27999932 -57695822 + AluSx SINE Alu 1 312 0 3647 199 66 101 chr15 27999950 28000576 -57695178 - L1MC4 LINE L1 -385 7657 7010 1848 141 20 10 chr15 28000576 28000873 -57694881 - AluJb SINE Alu -12 300 1 3647 199 66 101 chr15 28000873 28000957 -57694797 - L1MC4 LINE L1 -1032 7010 6925 2116 60 152 0 chr15 28000957 28001259 -57694495 - L1PA7 LINE L1 -1 6153 5806 3647 199 66 101 chr15 28001259 28001277 -57694477 - L1MC4 LINE L1 -1117 6925 6908 1663 157 30 13 chr15 28001277 28001576 -57694178 - AluJb SINE Alu -8 304 1 3647 199 66 101 chr15 28001576 28002088 -57693666 - L1MC4 LINE L1 -1134 6908 6459 568 244 8 0 chr15 28002320 28002439 -57693315 - FLAM_A SINE Alu -13 120 1 25 0 0 0 chr15 28002540 28002565 -57693189 + AT_rich Low_complexity Low_complexity 1 25 0 660 208 23 8 chr15 28002890 28003068 -57692686 + FLAM_C SINE Alu 1 180 0 2208 124 10 0 chr15 28003301 28003607 -57692147 - AluJb SINE Alu -3 309 1 1695 153 45 11 chr15 28003750 28004037 -57691717 + AluJb SINE Alu 1 297 -15 183 300 170 0 chr15 28004067 28004167 -57691587 - L2 LINE L2 0 3313 3197 795 132 0 76 chr15 28004243 28004387 -57691367 - FLAM_C SINE Alu 0 133 1 292 148 0 19 chr15 28004982 28005036 -57690718 - L1M4 LINE L1 -343 5835 5783 279 227 0 0 chr15 28005057 28005132 -57690622 - L1M4 LINE L1 -821 5353 5279 272 27 0 27 chr15 28005140 28005177 -57690577 - AluYa5 SINE Alu -103 198 163 505 173 75 8 chr15 28005314 28005447 -57690307 - AluSq/x SINE Alu -169 143 2 357 226 87 67 chr15 28005483 28005678 -57690076 + AluSq SINE Alu 2 200 -103 1030 110 12 61 chr15 28005726 28005889 -57689865 + AluSg/x SINE Alu 137 291 -21 2331 111 0 0 chr15 28005955 28006253 -57689501 + AluSx SINE Alu 1 298 -14 2392 108 0 0 chr15 28006859 28007166 -57688588 - AluSp SINE Alu -5 308 2 25 0 0 0 chr15 28007226 28007251 -57688503 + AT_rich Low_complexity Low_complexity 1 25 0 39 0 0 0 chr15 28007619 28007658 -57688096 + AT_rich Low_complexity Low_complexity 1 39 0 2543 81 7 0 chr15 28007835 28008145 -57687609 + AluSp SINE Alu 1 312 -1 2033 112 14 3 chr15 28008311 28008596 -57687158 - AluSx SINE Alu -24 288 1 59 38 0 0 chr15 28008982 28009062 -57686692 + AT_rich Low_complexity Low_complexity 1 80 0 2148 114 10 7 chr15 28009374 28009673 -57686081 + AluSx SINE Alu 2 301 -11 1998 109 72 0 chr15 28009816 28010092 -57685662 + AluSq SINE Alu 1 296 -17 422 181 90 95 chr15 28010611 28010678 -57685076 + MER5A DNA MER1_type 4 70 -119 2138 119 3 0 chr15 28010678 28010971 -57684783 + AluSx SINE Alu 1 294 -18 422 181 90 95 chr15 28010971 28011026 -57684728 + MER5A DNA MER1_type 70 124 -65 1844 181 3 7 chr15 28011026 28011335 -57684419 - AluJo SINE Alu -4 308 1 422 181 90 95 chr15 28011335 28011397 -57684357 + MER5A DNA MER1_type 124 188 -1 2290 103 0 13 chr15 28011582 28011882 -57683872 + AluSx SINE Alu 2 297 -15 583 76 19 95 chr15 28012817 28012843 -57682911 - AluJb SINE Alu -178 134 108 2012 142 3 0 chr15 28012843 28013138 -57682616 - AluSx SINE Alu -16 296 1 583 76 19 95 chr15 28013138 28013216 -57682538 - AluJb SINE Alu -204 108 38 1064 176 68 15 chr15 28013237 28013442 -57682312 - AluJo SINE Alu -12 300 85 30 0 0 24 chr15 28013442 28013457 -57682297 + AT_rich Low_complexity Low_complexity 1 15 -25 2150 125 0 0 chr15 28013457 28013746 -57682008 + AluSx SINE Alu 1 289 -23 30 0 0 24 chr15 28013746 28013771 -57681983 + AT_rich Low_complexity Low_complexity 15 40 0 1895 148 13 0 chr15 28013843 28014148 -57681606 + AluSc SINE Alu 1 309 0 2346 106 0 3 chr15 28014346 28014649 -57681105 - AluSx SINE Alu -10 302 1 248 120 0 20 chr15 28016110 28016160 -57679594 + LTR66 LTR ERVL 398 446 -164 644 235 0 22 chr15 28016828 28016964 -57678790 - FLAM_C SINE Alu 0 133 1 2402 82 3 0 chr15 28016974 28017267 -57678487 - AluY SINE Alu -17 294 1 1912 123 82 0 chr15 28017793 28018061 -57677693 - AluSg SINE Alu -20 290 1 394 225 0 0 chr15 28018593 28018673 -57677081 + MER116 DNA Mariner 1 80 0 215 252 0 62 chr15 28018990 28019073 -57676681 - MIR SINE MIR -49 159 81 905 249 93 70 chr15 28019129 28019498 -57676256 - L1MC4 LINE L1 -547 7495 7107 2210 105 6 16 chr15 28019498 28019812 -57675942 - AluSq SINE Alu -2 311 1 905 249 93 70 chr15 28019812 28019989 -57675765 - L1MC4 LINE L1 -935 7107 6936 978 98 0 0 chr15 28019995 28020118 -57675636 + AluSq/x SINE Alu 14 136 -177 2247 124 0 9 chr15 28020118 28020433 -57675321 + AluSx SINE Alu 1 312 0 315 354 93 0 chr15 28020437 28020598 -57675156 - L1MC4 LINE L1 -1124 6918 6743 291 200 124 19 chr15 28020670 28020775 -57674979 + L1MB8 LINE L1 5648 5763 -2045 283 337 87 22 chr15 28021125 28021309 -57674445 + MIR SINE MIR 5 200 -62 2425 100 0 0 chr15 28021468 28021777 -57673977 - AluSx SINE Alu -1 311 3 1765 176 25 0 chr15 28021787 28022105 -57673649 - L1MC1 LINE L1 0 6333 6008 729 181 0 7 chr15 28022107 28022256 -57673498 + L1MB8 LINE L1 6031 6178 0 2113 90 4 0 chr15 28022416 28022694 -57673060 + AluSp SINE Alu 34 312 -1 2239 102 0 3 chr15 28022720 28023013 -57672741 + AluSc SINE Alu 1 292 -17 1788 162 3 25 chr15 28023025 28023339 -57672415 + AluJb SINE Alu 5 311 -1 601 179 103 0 chr15 28023348 28023465 -57672289 + MER5A DNA MER1_type 61 189 0 730 182 0 8 chr15 28023480 28023601 -57672153 - FLAM_C SINE Alu -22 121 2 308 172 94 0 chr15 28023601 28023665 -57672089 - MER5A DNA MER1_type -111 78 9 2411 77 13 3 chr15 28023761 28024061 -57671693 + AluY SINE Alu 1 303 -8 719 152 0 0 chr15 28024290 28024402 -57671352 + FLAM_C SINE Alu 5 116 -17 184 284 90 0 chr15 28024421 28024488 -57671266 - MIR3 SINE MIR -23 185 113 2579 51 0 0 chr15 28024768 28025064 -57670690 - AluY SINE Alu -15 296 1 1679 81 0 18 chr15 28025468 28025689 -57670065 + AluSg/x SINE Alu 83 299 -11 1465 157 0 39 chr15 28025689 28025994 -57669760 + AluY SINE Alu 1 293 -18 433 214 140 13 chr15 28026241 28026470 -57669284 - AluYa5 SINE Alu -52 259 2 309 91 23 0 chr15 28026492 28026536 -57669218 - Charlie8 DNA MER1_type -6 2411 2367 414 0 0 0 chr15 28026730 28026776 -57668978 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 1281 203 48 22 chr15 28026776 28027047 -57668707 - AluJo SINE Alu -34 278 1 745 208 0 8 chr15 28027142 28027272 -57668482 + FLAM_C SINE Alu 1 129 -14 2505 81 0 0 chr15 28027305 28027614 -57668140 + AluY SINE Alu 1 309 -2 230 289 66 0 chr15 28027644 28027720 -57668034 + MIR SINE MIR 41 121 -87 1636 189 55 32 chr15 28027905 28028102 -57667652 - MLT1A2 LTR MaLR 0 374 164 2134 123 13 0 chr15 28028102 28028402 -57667352 - AluSx SINE Alu -8 304 1 1636 189 55 32 chr15 28028402 28028547 -57667207 - MLT1A2 LTR MaLR -210 164 24 189 0 0 0 chr15 28028846 28028867 -57666887 + (TG)n Simple_repeat Simple_repeat 2 22 0 1544 161 4 0 chr15 28028867 28029099 -57666655 - AluJo SINE Alu -22 290 55 2138 125 6 3 chr15 28029179 28029490 -57666264 + AluSp SINE Alu 2 313 0 1990 123 17 3 chr15 28029497 28029789 -57665965 + AluSx SINE Alu 1 296 -16 2377 96 0 10 chr15 28029929 28030241 -57665513 + AluSx SINE Alu 1 309 -3 218 274 32 0 chr15 28030398 28030460 -57665294 + MIR3 SINE MIR 138 201 -7 2381 82 0 38 chr15 28030566 28030884 -57664870 - AluSg SINE Alu -2 308 3 2534 68 0 3 chr15 28031461 28031769 -57663985 + AluSg SINE Alu 2 308 -2 280 321 0 38 chr15 28033088 28033247 -57662507 + G-rich Low_complexity Low_complexity 4 156 0 429 287 173 32 chr15 28033853 28034073 -57661681 + L2 LINE L2 2511 2699 -614 2228 89 3 7 chr15 28034073 28034375 -57661379 + AluSc SINE Alu 1 301 -8 429 287 173 32 chr15 28034375 28034671 -57661083 + L2 LINE L2 2699 2952 -361 2520 77 3 0 chr15 28034671 28034981 -57660773 - AluSp SINE Alu -2 311 1 429 287 173 32 chr15 28034981 28035171 -57660583 + L2 LINE L2 2952 3309 -4 200 346 90 38 chr15 28035182 28035448 -57660306 - L2 LINE L2 -71 3201 2922 360 335 124 28 chr15 28035488 28036028 -57659726 - L2 LINE L2 -460 2854 2263 2335 111 0 0 chr15 28036127 28036425 -57659329 - AluSq SINE Alu -15 298 1 1549 151 33 15 chr15 28036554 28036825 -57658929 - AluJb SINE Alu -8 304 29 665 96 10 19 chr15 28036827 28036931 -57658823 + MER4A LTR ERV1 1 103 -561 379 132 53 13 chr15 28036937 28037013 -57658741 - MER5B DNA MER1_type -93 85 7 351 197 28 0 chr15 28037028 28037099 -57658655 + MER5A DNA MER1_type 3 75 -114 1106 61 0 0 chr15 28037100 28037232 -57658522 + AluY SINE Alu 1 132 -179 509 193 118 34 chr15 28037245 28037364 -57658390 + MER5A DNA MER1_type 61 189 0 187 301 96 14 chr15 28037372 28037445 -57658309 - MER5B DNA MER1_type 0 178 100 1271 207 66 47 chr15 28037455 28037706 -57658048 + L1M4 LINE L1 2501 2763 -3383 2596 71 0 0 chr15 28037706 28038016 -57657738 - AluY SINE Alu -1 310 1 1271 207 66 47 chr15 28038016 28038126 -57657628 + L1M4 LINE L1 2763 2869 -3277 358 172 0 0 chr15 28038131 28038189 -57657565 + AluS SINE Alu 2 59 -249 249 174 22 0 chr15 28038404 28038450 -57657304 + MER5A DNA MER1_type 22 68 -121 1910 122 0 7 chr15 28038487 28038757 -57656997 + AluSq SINE Alu 1 268 -45 2341 99 0 3 chr15 28038800 28039102 -57656652 - AluSq SINE Alu -12 301 1 1760 131 11 8 chr15 28039102 28039362 -57656392 - AluSx SINE Alu -10 302 42 448 164 0 0 chr15 28039362 28039435 -57656319 - AluJ/FLAM SINE Alu -239 73 1 688 178 0 0 chr15 28039460 28039567 -57656187 + FLAM_C SINE Alu 3 109 -34 854 150 7 7 chr15 28039606 28039746 -57656008 + AluSc SINE Alu 10 149 -160 388 197 0 13 chr15 28040861 28040937 -57654817 + AluSc SINE Alu 116 190 -109 676 234 70 0 chr15 28041048 28041206 -57654548 + FRAM SINE Alu 1 162 -14 2304 112 3 0 chr15 28041217 28041522 -57654232 + AluSg SINE Alu 1 306 -4 180 0 0 0 chr15 28041522 28041542 -57654212 + (TA)n Simple_repeat Simple_repeat 2 21 0 934 181 77 22 chr15 28041543 28041823 -57653931 + L1M4 LINE L1 5140 5429 -737 676 117 0 0 chr15 28041863 28041957 -57653797 - AluSg/x SINE Alu -21 288 195 2736 107 9 27 chr15 28042103 28042689 -57653065 - L1MA7 LINE L1 -1 6290 5620 2198 92 3 3 chr15 28042790 28043094 -57652660 + AluSq SINE Alu 2 305 0 2257 109 0 6 chr15 28043619 28043930 -57651824 - AluSq SINE Alu -4 309 1 2266 101 0 0 chr15 28044350 28044638 -57651116 + AluSg SINE Alu 1 288 -22 2207 132 0 0 chr15 28044819 28045129 -57650625 + AluSx SINE Alu 1 310 -2 1820 152 11 3 chr15 28045434 28045717 -57650037 - AluJb SINE Alu -27 285 1 555 104 0 0 chr15 28046042 28046119 -57649635 + AluS SINE Alu 1 77 -236 1139 89 7 0 chr15 28047065 28047211 -57648543 - AluSq/x SINE Alu -164 149 3 21 0 0 0 chr15 28047716 28047737 -57648017 + AT_rich Low_complexity Low_complexity 1 21 0 740 269 0 0 chr15 28047737 28047893 -57647861 - AluSg/x SINE Alu -23 289 134 2196 121 16 0 chr15 28047911 28048216 -57647538 - AluSx SINE Alu -2 310 1 733 254 30 13 chr15 28048239 28048471 -57647283 - L1ME3A LINE L1 -8 6162 5927 573 190 109 22 chr15 28048474 28048611 -57647143 - MER63 DNA MER1_type -61 775 1 906 263 72 90 chr15 28048613 28048723 -57647031 - L2 LINE L2 -68 3245 3135 1712 168 70 3 chr15 28048723 28049009 -57646745 + AluJo SINE Alu 1 305 -7 906 263 72 90 chr15 28049009 28049399 -57646355 - L2 LINE L2 -178 3135 2779 2196 121 3 0 chr15 28049403 28049692 -57646062 - AluSg SINE Alu -18 292 3 2325 105 3 3 chr15 28049820 28050133 -57645621 - AluSq SINE Alu 0 313 1 974 200 31 0 chr15 28050170 28050365 -57645389 - MER3 DNA MER1_type -1 208 8 1478 194 0 32 chr15 28051378 28051662 -57644092 + AluJo SINE Alu 11 285 -27 252 0 0 0 chr15 28051663 28051691 -57644063 + (TA)n Simple_repeat Simple_repeat 1 28 0 2154 91 40 13 chr15 28051761 28052059 -57643695 + AluSq SINE Alu 1 306 -7 599 146 64 0 chr15 28052140 28052250 -57643504 - MER94 DNA DNA -17 117 1 2300 115 0 3 chr15 28053665 28053969 -57641785 + AluSx SINE Alu 1 303 -9 2161 130 0 7 chr15 28054108 28054416 -57641338 + AluSx SINE Alu 5 310 -2 2455 77 0 0 chr15 28054457 28054754 -57641000 + AluY SINE Alu 1 297 -14 207 301 12 0 chr15 28054803 28054886 -57640868 + (TATG)n Simple_repeat Simple_repeat 3 86 0 2210 126 10 0 chr15 28055155 28055456 -57640298 - AluSx SINE Alu -8 304 1 373 326 81 20 chr15 28055622 28055899 -57639855 - L1M4 LINE L1 -1059 5087 4795 2284 98 0 0 chr15 28056483 28056778 -57638976 - AluSc SINE Alu -13 296 2 275 261 0 108 chr15 28056867 28056922 -57638832 + MLT1L LTR MaLR 349 388 -227 2171 105 30 0 chr15 28056922 28057217 -57638537 - AluSq SINE Alu -9 304 1 275 261 0 108 chr15 28057217 28057272 -57638482 + MLT1L LTR MaLR 388 447 -168 1001 126 0 0 chr15 28057273 28057408 -57638346 + AluSq/x SINE Alu 1 135 -178 2207 120 3 0 chr15 28057408 28057716 -57638038 + AluSp SINE Alu 1 309 -4 435 222 192 78 chr15 28057835 28057956 -57637798 + MER5A DNA MER1_type 4 110 -79 2064 142 0 3 chr15 28057956 28058252 -57637502 - AluJb SINE Alu -17 295 1 2396 65 0 0 chr15 28058260 28058554 -57637200 - AluY SINE Alu -17 294 1 435 222 192 78 chr15 28058554 28058590 -57637164 + MER5A DNA MER1_type 116 189 0 333 323 58 26 chr15 28058651 28058711 -57637043 + MIR SINE MIR 86 143 -119 4909 73 19 29 chr15 28058711 28058961 -57636793 - LTR8 LTR ERV1 -2 689 438 2085 116 3 7 chr15 28058961 28059262 -57636492 - AluSg SINE Alu -10 300 1 4909 73 19 29 chr15 28059262 28059707 -57636047 - LTR8 LTR ERV1 -253 438 1 333 323 58 26 chr15 28059707 28059801 -57635953 + MIR SINE MIR 143 245 -17 2000 111 73 0 chr15 28059804 28060092 -57635662 + AluSx SINE Alu 1 309 -3 2074 108 0 30 chr15 28061340 28061645 -57634109 + AluSx SINE Alu 1 296 -16 2081 137 0 13 chr15 28061889 28062202 -57633552 - AluSx SINE Alu -3 309 1 627 293 61 56 chr15 28062234 28062630 -57633124 - MLT1J2 LTR MaLR -44 406 9 2275 78 3 0 chr15 28062728 28063040 -57632714 - AluSx SINE Alu 0 313 1 950 96 0 0 chr15 28063064 28063189 -57632565 - FLAM_C SINE Alu -8 125 1 1884 124 13 0 chr15 28063833 28064140 -57631614 - MER2 DNA MER2_type -34 311 1 3743 183 83 15 chr15 28064140 28064453 -57631301 + MER21B LTR ERV1 16 306 -557 2266 95 3 0 chr15 28064453 28064747 -57631007 + AluSg SINE Alu 1 295 -15 3743 183 83 15 chr15 28064747 28065224 -57630530 + MER21B LTR ERV1 306 860 -3 909 137 8 0 chr15 28065232 28065363 -57630391 - FLAM_C SINE Alu -11 132 1 2292 109 3 0 chr15 28065363 28065666 -57630088 - AluSq SINE Alu -1 312 9 495 284 65 48 chr15 28066088 28066234 -57629520 - MIR SINE MIR -10 252 99 1950 126 7 0 chr15 28066234 28066511 -57629243 + AluSg SINE Alu 11 289 -21 495 284 65 48 chr15 28066511 28066593 -57629161 - MIR SINE MIR -163 99 20 632 124 0 0 chr15 28066668 28066757 -57628997 + AluS SINE Alu 1 89 -224 2044 125 7 7 chr15 28066888 28067185 -57628569 + AluSq SINE Alu 1 297 -16 271 259 32 51 chr15 28067196 28067354 -57628400 - L1ME LINE L1 -317 5804 5650 356 148 0 0 chr15 28067513 28067567 -57628187 + Alu SINE Alu 1 54 -248 1330 120 0 11 chr15 28067568 28067759 -57627995 - AluSx SINE Alu -89 223 35 30 83 0 0 chr15 28067802 28067874 -57627880 + AT_rich Low_complexity Low_complexity 1 72 0 221 272 99 12 chr15 28068049 28068130 -57627624 - MIR SINE MIR -95 113 26 2305 108 16 0 chr15 28068204 28068511 -57627243 + AluSx SINE Alu 1 312 0 22 0 0 0 chr15 28070154 28070176 -57625578 + AT_rich Low_complexity Low_complexity 1 22 0 1320 184 0 0 chr15 28072626 28072838 -57622916 - AluJb SINE Alu -15 297 86 27 29 0 0 chr15 28072918 28072952 -57622802 + AT_rich Low_complexity Low_complexity 1 34 0 2270 93 3 7 chr15 28073755 28074057 -57621697 + AluSc SINE Alu 2 302 -7 21 0 0 0 chr15 28074218 28074239 -57621515 + AT_rich Low_complexity Low_complexity 1 21 0 2232 117 7 7 chr15 28074916 28075224 -57620530 + AluSx SINE Alu 1 308 -4 1492 137 26 36 chr15 28075421 28075727 -57620027 + AluSq SINE Alu 1 303 -10 1760 119 0 0 chr15 28076204 28076440 -57619314 + AluSq SINE Alu 55 290 -23 685 166 53 152 chr15 28077013 28077221 -57618533 + L1MB7 LINE L1 5919 6093 -91 1595 151 0 9 chr15 28077221 28077453 -57618301 - AluSx SINE Alu -19 293 64 685 166 53 152 chr15 28077453 28077527 -57618227 + L1MB7 LINE L1 6093 6173 -11 1848 129 56 3 chr15 28077544 28077663 -57618091 + AluSx SINE Alu 1 112 -200 287 24 0 24 chr15 28077663 28077704 -57618050 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1848 129 56 3 chr15 28077704 28077870 -57617884 + AluSx SINE Alu 112 301 -11 1132 119 0 6 chr15 28077872 28078032 -57617722 + AluSq SINE Alu 136 294 -19 1340 185 10 36 chr15 28078173 28078475 -57617279 - AluJo SINE Alu -18 294 1 2305 60 0 0 chr15 28078819 28079116 -57616638 + AluY SINE Alu 15 311 0 1787 160 44 15 chr15 28079130 28079468 -57616286 - L1PB4 LINE L1 -7 6149 5802 1967 153 0 7 chr15 28079715 28080022 -57615732 - AluJb SINE Alu -7 305 1 28 71 0 0 chr15 28080157 28080213 -57615541 + AT_rich Low_complexity Low_complexity 1 56 0 1544 94 21 39 chr15 28080691 28080925 -57614829 - MER30 DNA MER1_type 0 230 1 2219 101 0 13 chr15 28081149 28081457 -57614297 + AluSp SINE Alu 1 304 -9 1899 31 9 4 chr15 28081459 28081685 -57614069 + AluY SINE Alu 83 309 -2 24 32 0 0 chr15 28081912 28081943 -57613811 + AT_rich Low_complexity Low_complexity 1 31 0 1265 174 71 123 chr15 28081954 28082251 -57613503 + Charlie1b DNA MER1_type 1 258 -2503 2092 123 3 0 chr15 28082251 28082560 -57613194 + AluSq SINE Alu 1 310 0 1265 174 71 123 chr15 28082560 28082813 -57612941 + Charlie1b DNA MER1_type 258 523 0 22 0 0 0 chr15 28082943 28082965 -57612789 + AT_rich Low_complexity Low_complexity 1 22 0 2276 124 0 0 chr15 28083106 28083413 -57612341 + AluSx SINE Alu 1 307 -5 2293 96 7 0 chr15 28083634 28083936 -57611818 + AluSc SINE Alu 1 304 -5 189 107 0 0 chr15 28084292 28084320 -57611434 + (A)n Simple_repeat Simple_repeat 1 28 0 945 295 97 8 chr15 28085147 28085537 -57610217 + MER20B DNA MER1_type 68 492 -291 1024 200 120 47 chr15 28085928 28086203 -57609551 - AluJo SINE Alu -7 295 1 645 228 148 10 chr15 28086570 28086873 -57608881 + MER20B DNA MER1_type 439 783 0 317 295 31 61 chr15 28087262 28087523 -57608231 - L1ME4a LINE L1 0 6121 5869 1068 297 202 9 chr15 28087619 28088372 -57607382 - L2 LINE L2 -7 3306 2367 1646 168 20 14 chr15 28088815 28089107 -57606647 - AluJo SINE Alu -17 295 2 482 298 128 25 chr15 28089226 28089585 -57606169 - L1ME4a LINE L1 -5 6116 5721 290 245 41 10 chr15 28089587 28089685 -57606069 - L1ME4a LINE L1 -435 5686 5586 1526 204 0 0 chr15 28089771 28090040 -57605714 - AluJb SINE Alu -8 304 36 301 286 43 36 chr15 28090040 28090180 -57605574 - L1ME4a LINE L1 -2398 5410 5270 338 264 80 16 chr15 28090192 28090317 -57605437 + MIR SINE MIR 104 236 -26 2154 126 7 0 chr15 28090362 28090664 -57605090 - AluSx SINE Alu -8 304 1 977 153 19 6 chr15 28091185 28091342 -57604412 - AluJo/FRAM SINE Alu -20 292 134 1757 171 31 0 chr15 28091342 28091629 -57604125 - AluJb SINE Alu -16 296 1 267 152 0 0 chr15 28091831 28091877 -57603877 + (CATA)n Simple_repeat Simple_repeat 3 48 0 205 208 26 0 chr15 28092085 28092162 -57603592 + (TA)n Simple_repeat Simple_repeat 1 79 0 1946 139 36 0 chr15 28092524 28092825 -57602929 + AluSx SINE Alu 1 312 0 308 295 67 0 chr15 28094024 28094129 -57601625 - L1MC4a LINE L1 -1845 5963 5852 359 365 84 0 chr15 28094215 28094453 -57601301 - L1MC4a LINE L1 -2075 5733 5476 2032 121 0 21 chr15 28094539 28094856 -57600898 + AluSx SINE Alu 1 311 0 22 35 0 0 chr15 28095465 28095494 -57600260 + AT_rich Low_complexity Low_complexity 1 29 0 2275 107 3 3 chr15 28095538 28095848 -57599906 + AluY SINE Alu 1 310 -1 2348 84 0 0 chr15 28095896 28096194 -57599560 + AluY SINE Alu 13 310 -1 1941 124 3 13 chr15 28096200 28096506 -57599248 + AluSg SINE Alu 1 303 -7 21 0 0 0 chr15 28096784 28096805 -57598949 + AT_rich Low_complexity Low_complexity 1 21 0 1897 158 3 0 chr15 28097042 28097340 -57598414 - AluSp SINE Alu -14 299 1 718 220 112 58 chr15 28098417 28098736 -57597018 + LTR54 LTR ERV1 78 482 -28 1994 144 7 0 chr15 28098737 28099042 -57596712 + AluSx SINE Alu 1 307 -5 1072 209 103 19 chr15 28099159 28099422 -57596332 + LTR40b LTR ERVL 178 462 0 1054 77 0 0 chr15 28099742 28099872 -57595882 - AluSp SINE Alu -17 296 167 868 146 18 30 chr15 28100278 28100443 -57595311 - AluSp SINE Alu -150 163 1 794 139 0 0 chr15 28101045 28101188 -57594566 + FLAM_A SINE Alu 8 150 0 2307 112 0 0 chr15 28101233 28101545 -57594209 + AluSx SINE Alu 1 312 0 2289 119 0 3 chr15 28101630 28101932 -57593822 + AluSx SINE Alu 1 301 -11 890 142 0 22 chr15 28101941 28102075 -57593679 + FLAM_C SINE Alu 1 131 -2 287 175 0 79 chr15 28102094 28102157 -57593597 - L2 LINE L2 -45 3268 3211 902 279 29 16 chr15 28102384 28102464 -57593290 - MER115 DNA AcHobo -2 691 613 2534 56 0 0 chr15 28102464 28102767 -57592987 + AluY SINE Alu 1 303 -8 902 279 29 16 chr15 28102767 28102930 -57592824 - MER115 DNA AcHobo -80 613 445 3395 225 73 9 chr15 28102958 28103757 -57591997 + MER21B LTR ERV1 3 852 -11 1290 301 37 32 chr15 28103789 28104224 -57591530 - MER115 DNA AcHobo -256 437 1 2204 114 0 3 chr15 28104253 28104552 -57591202 - AluSg SINE Alu -11 299 2 1344 158 27 5 chr15 28105060 28105282 -57590472 - AluSx SINE Alu -1 309 83 584 133 0 0 chr15 28105423 28105498 -57590256 - AluSx SINE Alu -237 76 2 2380 102 0 6 chr15 28105502 28105815 -57589939 - AluSx SINE Alu -1 311 1 355 327 39 18 chr15 28105851 28105979 -57589775 - MIR SINE MIR -81 127 2 1989 129 3 10 chr15 28106000 28106313 -57589441 - AluSx SINE Alu 0 312 1 1853 114 12 4 chr15 28106666 28106921 -57588833 + AluSg SINE Alu 1 257 -53 935 128 0 0 chr15 28107044 28107169 -57588585 - AluSq/x SINE Alu -188 125 1 611 349 24 8 chr15 28107228 28107480 -57588274 - MIR SINE MIR 0 262 7 580 173 90 38 chr15 28108140 28108255 -57587499 - Charlie1b DNA MER1_type -2238 523 399 2603 78 15 0 chr15 28108255 28108590 -57587164 + L1PA14 LINE L1 5804 6143 -18 580 173 90 38 chr15 28108590 28108607 -57587147 - Charlie1b DNA MER1_type -2362 399 384 246 287 49 16 chr15 28108661 28108783 -57586971 - MER50 LTR ERV1 -23 711 586 2328 88 3 0 chr15 28110302 28110607 -57585147 + AluSq SINE Alu 1 306 -7 404 204 82 31 chr15 28110613 28110711 -57585043 - Charlie1a DNA MER1_type -721 734 632 * 783 199 54 38 chr15 28110706 28110892 -57584862 - Charlie1a DNA MER1_type -1266 189 1 652 206 231 58 chr15 28110893 28111190 -57584564 + L1MC5 LINE L1 7183 7566 -395 1812 137 48 20 chr15 28111190 28111483 -57584271 + AluSx SINE Alu 1 301 -11 652 206 231 58 chr15 28111483 28111579 -57584175 + L1MC5 LINE L1 7566 7644 -317 202 219 0 24 chr15 28112315 28112356 -57583398 - L2 LINE L2 -93 3179 3140 2231 97 7 3 chr15 28112596 28112885 -57582869 - AluSx SINE Alu -22 290 1 823 196 0 20 chr15 28113203 28113351 -57582403 + AluJo SINE Alu 1 145 -167 1976 171 0 0 chr15 28113354 28113664 -57582090 + AluSx SINE Alu 3 312 0 937 164 0 31 chr15 28113666 28113825 -57581929 + AluJo SINE Alu 120 273 -39 1939 153 0 29 chr15 28113832 28114000 -57581754 - AluJb SINE Alu -10 302 146 2290 89 7 3 chr15 28114000 28114292 -57581462 - AluSg SINE Alu -17 293 1 1939 153 0 29 chr15 28114292 28114430 -57581324 - AluJb SINE Alu -166 146 5 342 0 0 0 chr15 28114439 28114477 -57581277 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 768 274 18 53 chr15 28114491 28114717 -57581037 + MIR SINE MIR 37 254 -8 1869 112 0 0 chr15 28114728 28114977 -57580777 + AluSg SINE Alu 55 303 -7 201 121 0 0 chr15 28115465 28115498 -57580256 + (A)n Simple_repeat Simple_repeat 1 33 0 186 133 0 0 chr15 28116774 28116804 -57578950 + (A)n Simple_repeat Simple_repeat 1 30 0 2404 84 0 3 chr15 28116838 28117137 -57578617 - AluSp SINE Alu -15 298 1 623 257 44 0 chr15 28117246 28117429 -57578325 - L2 LINE L2 0 3313 3123 228 147 0 0 chr15 28117429 28117463 -57578291 + Alu SINE Alu 1 34 -268 2256 110 10 0 chr15 28117805 28118105 -57577649 + AluY SINE Alu 1 303 -8 1074 113 0 0 chr15 28118892 28119034 -57576720 + AluSq/x SINE Alu 1 142 -170 2476 68 0 0 chr15 28119035 28119331 -57576423 + AluSg SINE Alu 1 296 -14 2218 92 3 23 chr15 28119616 28119920 -57575834 + AluSg SINE Alu 1 298 -12 232 87 0 43 chr15 28119926 28119972 -57575782 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 2415 72 0 7 chr15 28121088 28121393 -57574361 + AluSq SINE Alu 1 303 -10 259 114 0 0 chr15 28122301 28122336 -57573418 - tRNA-Met-e tRNA tRNA -40 35 1 2228 90 13 19 chr15 28122778 28123090 -57572664 - AluSg SINE Alu 0 310 1 2166 103 3 13 chr15 28123547 28123848 -57571906 - AluY SINE Alu -13 298 1 2343 75 10 0 chr15 28123882 28124174 -57571580 - AluSg SINE Alu -15 295 1 2420 59 3 0 chr15 28125183 28125472 -57570282 + AluY SINE Alu 1 290 -21 23 68 0 0 chr15 28125881 28125925 -57569829 + AT_rich Low_complexity Low_complexity 1 44 0 2859 3 0 3 chr15 28126182 28126491 -57569263 - AluYa8 SINE Alu -2 308 1 336 203 0 0 chr15 28126495 28126559 -57569195 + MIR3 SINE MIR 120 183 -25 21 0 0 0 chr15 28127091 28127112 -57568642 + AT_rich Low_complexity Low_complexity 1 21 0 2194 114 3 0 chr15 28127242 28127539 -57568215 - AluSg SINE Alu -11 299 2 2399 89 3 0 chr15 28128237 28128539 -57567215 - AluSp SINE Alu -9 304 2 932 102 8 0 chr15 28128772 28128899 -57566855 - L1MA1 LINE L1 -9 6293 6166 2511 71 0 3 chr15 28128940 28129249 -57566505 + AluSg SINE Alu 1 308 -2 305 314 0 38 chr15 28130568 28130727 -57565027 + G-rich Low_complexity Low_complexity 4 156 0 305 264 212 35 chr15 28131327 28131547 -57564207 + L2 LINE L2 2511 2691 -623 2209 89 3 7 chr15 28131547 28131849 -57563905 + AluSc SINE Alu 1 301 -8 305 264 212 35 chr15 28131849 28132025 -57563729 + L2 LINE L2 2691 2977 -337 270 0 0 0 chr15 28132207 28132237 -57563517 + (TATG)n Simple_repeat Simple_repeat 1 30 0 1916 128 25 0 chr15 28132237 28132511 -57563243 - AluSx SINE Alu -31 281 1 23 78 0 0 chr15 28132745 28132796 -57562958 + AT_rich Low_complexity Low_complexity 1 51 0 1150 154 166 24 chr15 28133104 28133351 -57562403 - AluJo SINE Alu -8 304 23 1754 137 6 76 chr15 28133802 28134117 -57561637 - AluJb SINE Alu -19 293 1 286 235 284 0 chr15 28134129 28134210 -57561544 + MLT1B LTR MaLR 3 106 -361 1330 212 26 55 chr15 28134210 28134555 -57561199 + MLT1B LTR MaLR 56 390 0 688 251 145 60 chr15 28134588 28135186 -57560568 + L2 LINE L2 2596 3231 -82 2229 111 7 0 chr15 28135249 28135547 -57560207 + AluSx SINE Alu 1 300 -12 818 236 103 15 chr15 28135795 28135915 -57559839 - MER58A DNA MER1_type -2199 221 113 2411 127 16 26 chr15 28135915 28136294 -57559460 + THE1C LTR MaLR 1 375 0 818 236 103 15 chr15 28136294 28136376 -57559378 - MER58A DNA MER1_type -2307 113 1 2181 100 7 0 chr15 28136541 28136830 -57558924 + AluSg SINE Alu 1 291 -19 21 36 0 0 chr15 28137595 28137623 -57558131 + AT_rich Low_complexity Low_complexity 1 28 0 2162 121 20 0 chr15 28138052 28138358 -57557396 + AluSq SINE Alu 1 312 -1 2104 113 13 3 chr15 28138514 28138816 -57556938 + AluY SINE Alu 1 305 -6 768 210 49 6 chr15 28138821 28138983 -57556771 - MER2 DNA MER2_type -1 344 176 816 153 38 8 chr15 28138994 28139125 -57556629 - AluJo SINE Alu -176 136 2 704 176 197 0 chr15 28139126 28139268 -57556486 - MER2 DNA MER2_type -175 170 1 352 190 66 7 chr15 28139268 28139405 -57556349 + L1MEc LINE L1 2093 2237 -4159 386 260 65 7 chr15 28139466 28139650 -57556104 + L1MEc LINE L1 2379 2572 -3643 30 27 0 0 chr15 28140028 28140065 -57555689 + AT_rich Low_complexity Low_complexity 1 37 0 1325 211 23 20 chr15 28140215 28140518 -57555236 + AluJo SINE Alu 9 312 0 732 213 10 55 chr15 28140519 28140721 -57555033 + L1ME1 LINE L1 5795 5987 -179 1125 296 44 52 chr15 28140735 28140963 -57554791 + L1MEc LINE L1 216 444 -5952 2355 94 10 3 chr15 28140963 28141272 -57554482 + AluSx SINE Alu 1 311 -1 1125 296 44 52 chr15 28141272 28141463 -57554291 + L1MEc LINE L1 444 635 -5761 2159 140 0 0 chr15 28141463 28141771 -57553983 + AluSx SINE Alu 1 308 -4 1125 296 44 52 chr15 28141771 28141957 -57553797 + L1MEc LINE L1 635 817 -5579 1704 186 7 0 chr15 28141957 28142258 -57553496 + AluJb SINE Alu 1 303 -9 1125 296 44 52 chr15 28142258 28142384 -57553370 + L1MEc LINE L1 817 943 -5453 1241 154 107 74 chr15 28142415 28142714 -57553040 + AluSg SINE Alu 2 310 0 1292 103 16 11 chr15 28142748 28142932 -57552822 + AluSc SINE Alu 90 274 -35 203 0 0 36 chr15 28142939 28142967 -57552787 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 560 189 60 31 chr15 28142969 28143102 -57552652 + L1MEc LINE L1 3081 3224 -2991 2274 107 13 0 chr15 28143102 28143410 -57552344 + AluSx SINE Alu 1 312 0 560 189 60 31 chr15 28143410 28143520 -57552234 + L1MEc LINE L1 3224 3329 -2886 343 121 0 0 chr15 28143535 28143594 -57552160 + Alu SINE Alu 247 299 -3 547 249 37 6 chr15 28143594 28143787 -57551967 + L1MEc LINE L1 3556 3756 -2459 628 200 9 0 chr15 28143790 28143900 -57551854 + FLAM_A SINE Alu 20 130 -12 1556 154 62 41 chr15 28143931 28144223 -57551531 + AluJb SINE Alu 1 298 -14 848 141 16 0 chr15 28144223 28144351 -57551403 + BC200 scRNA scRNA 4 133 -67 356 213 13 0 chr15 28144352 28144427 -57551327 + L1MEc LINE L1 3986 4061 -2154 310 273 0 0 chr15 28144474 28144540 -57551214 + MER77 LTR ERV1 540 605 0 783 274 91 58 chr15 28144540 28145219 -57550535 + L1MEc LINE L1 102 757 -5448 2254 92 14 3 chr15 28145219 28145513 -57550241 + AluSx SINE Alu 1 297 -15 783 274 91 58 chr15 28145513 28145768 -57549986 + L1MEc LINE L1 757 1036 -5169 2233 100 3 13 chr15 28145768 28146079 -57549675 + AluY SINE Alu 1 308 -3 783 274 91 58 chr15 28146079 28146199 -57549555 + L1MEc LINE L1 1036 1151 -5054 2138 133 3 0 chr15 28146205 28146514 -57549240 + AluSg SINE Alu 1 310 0 997 230 32 81 chr15 28146515 28146767 -57548987 + L1M2 LINE L1 1371 1634 -4582 2017 134 20 13 chr15 28146767 28147073 -57548681 + AluSg SINE Alu 1 308 -2 997 230 32 81 chr15 28147073 28147337 -57548417 + L1M2 LINE L1 1634 1966 -4250 1541 162 9 115 chr15 28147347 28147687 -57548067 - AluJb SINE Alu -8 304 1 2336 81 3 0 chr15 28148093 28148378 -57547376 + AluSx SINE Alu 1 286 -26 671 171 7 36 chr15 28148514 28148654 -57547100 - MER50 LTR ERV1 -156 578 443 4244 118 188 88 chr15 28148658 28149948 -57545806 + pTR5 LTR ERV1 742 2295 -143 1966 141 70 27 chr15 28149962 28150374 -57545380 - MER50 LTR ERV1 -295 439 10 1491 179 16 82 chr15 28150708 28151148 -57544606 - Charlie1b DNA MER1_type -112 411 1 3113 133 9 11 chr15 28151266 28151479 -57544275 - L1MB3 LINE L1 -7 6176 5964 1681 147 10 38 chr15 28151479 28151792 -57543962 - AluJo SINE Alu -8 304 1 3113 133 9 11 chr15 28151792 28152104 -57543650 - L1MB3 LINE L1 -219 5964 5652 529 152 0 0 chr15 28152144 28152236 -57543518 - L1MB3 LINE L1 -522 5661 5570 180 0 0 0 chr15 28152306 28152326 -57543428 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 2230 109 6 3 chr15 28152591 28152902 -57542852 + AluSx SINE Alu 1 312 0 315 0 0 0 chr15 28153885 28153920 -57541834 + (CA)n Simple_repeat Simple_repeat 1 35 0 2225 102 7 0 chr15 28154089 28154384 -57541370 - AluSx SINE Alu -15 297 1 234 257 0 14 chr15 28154738 28154808 -57540946 + CT-rich Low_complexity Low_complexity 2 70 0 1858 237 131 27 chr15 28154868 28155564 -57540190 + LTR50 LTR ERVL 4 771 -24 2457 74 3 6 chr15 28155604 28155916 -57539838 - AluSp SINE Alu -2 311 1 282 234 144 58 chr15 28157042 28157230 -57538524 - L1ME LINE L1 -372 5749 5546 2126 112 0 14 chr15 28157361 28157681 -57538073 + AluSx SINE Alu 1 316 0 204 40 0 0 chr15 28158276 28158301 -57537453 + (CAAAAA)n Simple_repeat Simple_repeat 5 29 0 383 305 122 89 chr15 28158908 28159302 -57536452 + HAL1 LINE L1 1338 1744 -763 22 0 0 0 chr15 28160672 28160694 -57535060 + AT_rich Low_complexity Low_complexity 1 22 0 262 220 85 0 chr15 28160773 28160832 -57534922 + MER91 DNA MER1_type 1 64 -76 1070 166 50 55 chr15 28161006 28161325 -57534429 - MER33 DNA MER1_type -16 308 1 383 275 55 0 chr15 28161461 28161603 -57534151 + L1ME LINE L1 5434 5581 -540 249 209 0 0 chr15 28161736 28161803 -57533951 + (TA)n Simple_repeat Simple_repeat 2 68 0 298 274 57 8 chr15 28162906 28163030 -57532724 + LTR67 LTR ERVL 425 554 -3 237 247 130 0 chr15 28163406 28163483 -57532271 - L3 LINE CR1 -162 1415 1329 1187 321 116 30 chr15 28163497 28163654 -57532100 - L3 LINE CR1 -785 792 650 2360 96 0 3 chr15 28163654 28163955 -57531799 + AluSg SINE Alu 1 300 -10 1187 321 116 30 chr15 28163955 28164420 -57531334 - L3 LINE CR1 -927 650 117 1951 154 3 3 chr15 28164547 28164833 -57530921 - AluJb SINE Alu -24 288 3 332 247 105 40 chr15 28164913 28165160 -57530594 - L1ME4a LINE L1 -4 6117 5855 2333 91 7 0 chr15 28165190 28165487 -57530267 - AluSq SINE Alu -14 299 1 313 306 110 58 chr15 28165755 28165928 -57529826 - MIR SINE MIR -71 191 10 1942 95 7 3 chr15 28166210 28166493 -57529261 + L1PB2 LINE L1 5865 6148 -3 1299 119 0 0 chr15 28166661 28166846 -57528908 - AluSg/x SINE Alu -11 301 117 2238 101 0 3 chr15 28167908 28168204 -57527550 + AluSc SINE Alu 7 301 -8 1559 185 35 78 chr15 28168513 28168686 -57527068 - MLT1C LTR MaLR -1 466 287 2179 115 7 0 chr15 28168686 28168991 -57526763 - AluSx SINE Alu -4 308 2 1559 185 35 78 chr15 28168991 28169209 -57526545 - MLT1C LTR MaLR -180 287 98 1701 94 75 130 chr15 28169209 28169540 -57526214 - AluSp SINE Alu 0 313 1 1559 185 35 78 chr15 28169540 28169634 -57526120 - MLT1C LTR MaLR -369 98 1 874 279 24 34 chr15 28170388 28170596 -57525158 - AluY SINE Alu -12 299 94 1262 119 0 0 chr15 28171243 28171403 -57524351 - AluSx SINE Alu -152 160 1 508 268 47 22 chr15 28171405 28171681 -57524073 - L1MC5 LINE L1 -178 7783 7501 226 167 48 0 chr15 28171772 28171814 -57523940 - MER20 DNA MER1_type -175 44 1 263 181 83 0 chr15 28171848 28171920 -57523834 - L1MC4 LINE L1 -1350 6692 6615 240 234 130 0 chr15 28171851 28171928 -57523826 + L1MC4 LINE L1 6614 6700 -1342 * 306 245 0 82 chr15 28171967 28172065 -57523689 - L1MC4 LINE L1 -1339 6703 6614 230 264 23 0 chr15 28172081 28172168 -57523586 + L1MC4 LINE L1 6614 6702 -1340 * 242 267 12 0 chr15 28172129 28172215 -57523539 - L1MC4 LINE L1 -1341 6701 6615 240 167 0 0 chr15 28172218 28172266 -57523488 + (TA)n Simple_repeat Simple_repeat 2 49 0 229 261 0 22 chr15 28172266 28172358 -57523396 + L1MC4 LINE L1 6614 6703 -1339 1990 127 40 0 chr15 28172368 28172668 -57523086 + AluSx SINE Alu 1 312 0 245 314 33 33 chr15 28172843 28172996 -57522758 - L1MC4a LINE L1 -412 7396 7244 569 223 54 22 chr15 28173020 28173244 -57522510 - L1MC5 LINE L1 -738 7223 6993 364 259 6 82 chr15 28173284 28173380 -57522374 - L1MC4 LINE L1 -945 7097 7016 1836 162 10 7 chr15 28173380 28173683 -57522071 - AluJb SINE Alu -8 304 1 364 259 6 82 chr15 28173683 28173744 -57522010 - L1MC4 LINE L1 -1026 7016 6952 423 0 0 0 chr15 28173857 28173904 -57521850 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 2289 114 0 0 chr15 28173955 28174252 -57521502 + AluSq SINE Alu 1 297 -16 5154 185 47 24 chr15 28174273 28174637 -57521117 - L1MC1 LINE L1 -89 6244 5890 9161 97 11 9 chr15 28174637 28175922 -57519832 - HSMAR1 DNA Mariner 0 1287 1 5154 185 47 24 chr15 28175922 28176614 -57519140 - L1MC1 LINE L1 -443 5890 5216 230 0 0 32 chr15 28176624 28176655 -57519099 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2116 125 0 3 chr15 28176655 28176940 -57518814 - AluSx SINE Alu -26 286 1 5154 185 47 24 chr15 28176940 28177344 -57518410 - L1MC1 LINE L1 -1117 5216 4823 2418 77 7 0 chr15 28177344 28177642 -57518112 - AluSx SINE Alu -12 300 1 5154 185 47 24 chr15 28177642 28177970 -57517784 - L1MC1 LINE L1 -1510 4823 4415 1732 175 8 38 chr15 28177975 28178340 -57517414 - MLT1A1 LTR MaLR -11 354 1 2072 216 30 17 chr15 28178340 28178808 -57516946 - MLT1A1-int LTR MaLR 0 1735 1262 234 132 0 0 chr15 28179098 28179136 -57516618 - MLT1A1-int LTR MaLR -515 856 819 2333 73 3 16 chr15 28179140 28179455 -57516299 - AluY SINE Alu 0 311 1 1231 212 7 33 chr15 28179464 28179770 -57515984 - MLT1A1-int LTR MaLR -639 732 435 2012 115 10 23 chr15 28179770 28180074 -57515680 + AluSq SINE Alu 1 300 -13 250 62 62 21 chr15 28180099 28180147 -57515607 + CT-rich Low_complexity Low_complexity 5 54 0 2172 129 0 0 chr15 28180158 28180460 -57515294 - AluSx SINE Alu 0 312 11 527 221 0 0 chr15 28180473 28180577 -57515177 - MLT1A1-int LTR MaLR -1312 423 320 4104 177 15 47 chr15 28180578 28181047 -57514707 + L1PB2 LINE L1 3436 3919 -2227 2182 107 31 0 chr15 28181047 28181337 -57514417 + AluSx SINE Alu 1 299 -13 4104 177 15 47 chr15 28181337 28181882 -57513872 + L1PB2 LINE L1 3919 4417 -1729 1413 116 0 20 chr15 28181882 28182120 -57513634 + AluSg/x SINE Alu 88 321 0 5775 142 10 36 chr15 28182127 28182223 -57513531 + L1PB2 LINE L1 4396 4493 -1658 2063 98 8 0 chr15 28182223 28182489 -57513265 + AluSq SINE Alu 1 268 -45 5775 142 10 36 chr15 28182489 28183096 -57512658 + L1PB2 LINE L1 4493 5114 -1037 2383 64 0 0 chr15 28183096 28183399 -57512355 + AluY SINE Alu 1 303 0 5775 142 10 36 chr15 28183399 28184503 -57511251 + L1PB2 LINE L1 5114 6148 -3 1568 220 3 0 chr15 28184506 28184838 -57510916 - MLT1A1-int LTR MaLR -1402 333 1 1838 194 72 16 chr15 28184853 28185239 -57510515 - MLT2B1 LTR ERVL -50 470 63 1778 112 0 8 chr15 28185243 28185492 -57510262 + AluSq SINE Alu 67 313 0 3747 237 48 20 chr15 28185519 28186744 -57509010 - L1M4 LINE L1 -1743 4403 3144 1583 195 122 3 chr15 28186900 28187284 -57508470 + MER63B DNA MER1_type 1 430 -6 425 266 98 80 chr15 28187285 28187461 -57508293 - L1MEd LINE L1 -1168 1322 1151 1776 141 36 36 chr15 28187461 28187766 -57507988 - AluJb SINE Alu -7 305 1 425 266 98 80 chr15 28187766 28187800 -57507954 - L1MEd LINE L1 -1339 1151 1119 2133 122 3 0 chr15 28187800 28188094 -57507660 + AluSq SINE Alu 1 295 -18 425 266 98 80 chr15 28188094 28188209 -57507545 - L1MEd LINE L1 -1371 1119 993 1051 296 94 19 chr15 28188241 28188711 -57507043 - LTR33 LTR ERVL -8 513 9 22 80 0 0 chr15 28189312 28189362 -57506392 + AT_rich Low_complexity Low_complexity 1 50 0 2404 77 0 3 chr15 28189448 28189746 -57506008 - AluY SINE Alu -13 298 2 1663 156 25 7 chr15 28189754 28190029 -57505725 + AluJb SINE Alu 18 297 -15 404 272 64 46 chr15 28190067 28190350 -57505404 + L1ME LINE L1 5532 5819 -302 2240 99 17 0 chr15 28190359 28190661 -57505093 + AluY SINE Alu 1 307 -4 2229 108 10 0 chr15 28191111 28191407 -57504347 - AluSx SINE Alu -13 299 1 221 272 99 12 chr15 28191481 28191562 -57504192 + MIR SINE MIR 26 113 -95 30 83 0 0 chr15 28191732 28191804 -57503950 + AT_rich Low_complexity Low_complexity 1 72 0 1330 120 0 11 chr15 28191847 28192038 -57503716 + AluSx SINE Alu 35 223 -89 356 148 0 0 chr15 28192039 28192093 -57503661 - Alu SINE Alu -247 54 1 229 272 32 51 chr15 28192252 28192410 -57503344 + L1ME LINE L1 5650 5804 -317 2230 105 7 3 chr15 28192421 28192717 -57503037 - AluSq SINE Alu -16 297 1 1014 125 0 0 chr15 28193379 28193515 -57502239 + AluSq/x SINE Alu 2 137 -175 1906 104 97 0 chr15 28193515 28193794 -57501960 + AluY SINE Alu 1 306 -5 2171 98 14 3 chr15 28194573 28194868 -57500886 - AluSp SINE Alu -15 298 1 1611 192 10 19 chr15 28195126 28195438 -57500316 + AluJb SINE Alu 1 309 -3 2328 77 0 39 chr15 28195460 28195771 -57499983 + AluSc SINE Alu 1 299 -10 513 270 104 48 chr15 28195928 28196127 -57499627 + L1M4 LINE L1 2374 2560 -3586 1638 174 24 17 chr15 28196127 28196420 -57499334 + AluJb SINE Alu 1 295 -17 513 270 104 48 chr15 28196420 28196564 -57499190 + L1M4 LINE L1 2560 2694 -3452 1816 152 35 0 chr15 28196564 28196853 -57498901 + AluSq SINE Alu 1 299 -14 513 270 104 48 chr15 28196853 28197155 -57498599 + L1M4 LINE L1 2694 3080 -3066 2097 116 7 10 chr15 28197155 28197458 -57498296 + AluSx SINE Alu 1 302 -10 513 270 104 48 chr15 28197458 28197646 -57498108 + L1M4 LINE L1 3080 3256 -2890 1410 153 0 18 chr15 28197646 28197874 -57497880 + AluJb SINE Alu 50 273 -39 361 167 12 12 chr15 28197880 28197964 -57497790 + GA-rich Low_complexity Low_complexity 3 86 0 2191 109 10 0 chr15 28197964 28198257 -57497497 + AluSp SINE Alu 1 296 -17 962 136 0 0 chr15 28198337 28198492 -57497262 + MER41B LTR ERV1 481 635 0 592 115 23 0 chr15 28198492 28198579 -57497175 + MER41B-int LTR ERV1 1 89 -5857 518 144 0 11 chr15 28198575 28198665 -57497089 + MER41B-int LTR ERV1 2416 2504 -3442 * 1228 105 90 0 chr15 28198658 28198858 -57496896 + MER41B-int LTR ERV1 2631 2848 -3098 1969 119 3 20 chr15 28198866 28199161 -57496593 + AluSx SINE Alu 1 290 -22 11030 98 37 25 chr15 28199187 28199943 -57495811 + MER41B-int LTR ERV1 2393 3138 -2808 2111 134 3 7 chr15 28199943 28200250 -57495504 - AluSq SINE Alu -7 306 1 11030 98 37 25 chr15 28200250 28200602 -57495152 + MER41B-int LTR ERV1 3138 3484 -2462 2010 138 27 3 chr15 28200602 28200899 -57494855 + AluSx SINE Alu 1 304 -8 11030 98 37 25 chr15 28200899 28201691 -57494063 + MER41B-int LTR ERV1 3484 5944 -2 3825 114 13 2 chr15 28201692 28202236 -57493518 + MER41B LTR ERV1 2 551 -84 234 128 0 0 chr15 28202238 28202277 -57493477 + (A)n Simple_repeat Simple_repeat 1 39 0 445 230 0 0 chr15 28202335 28202422 -57493332 + AluJ/FLAM SINE Alu 2 88 -224 2350 119 54 33 chr15 28202437 28202866 -57492888 - L1MA8 LINE L1 -68 6223 5786 4971 127 58 57 chr15 28202868 28202964 -57492790 + Tigger3b DNA MER2_type 3 97 -2931 1580 174 37 37 chr15 28202964 28203258 -57492496 + AluJo SINE Alu 1 294 -18 4971 127 58 57 chr15 28203258 28203499 -57492255 + Tigger3b DNA MER2_type 97 336 -2692 2193 84 17 17 chr15 28203499 28203798 -57491956 - AluY SINE Alu -12 299 1 4971 127 58 57 chr15 28203798 28204070 -57491684 + Tigger3b DNA MER2_type 336 606 -2422 2222 101 37 0 chr15 28204070 28204368 -57491386 + AluSx SINE Alu 1 309 -3 4971 127 58 57 chr15 28204368 28204711 -57491043 + Tigger3b DNA MER2_type 606 958 -273 4644 100 25 21 chr15 28204714 28205431 -57490323 - L1PB1 LINE L1 0 6151 5432 2260 121 0 0 chr15 28205431 28205729 -57490025 - AluSx SINE Alu -12 300 3 1099 112 0 0 chr15 28205731 28205874 -57489880 - AluSq/x SINE Alu -170 143 1 1058 246 53 48 chr15 28205890 28206305 -57489449 - L1M1 LINE L1 -4327 3238 2822 2278 120 0 0 chr15 28206503 28206804 -57488950 + AluSq SINE Alu 1 301 -12 827 258 37 12 chr15 28207298 28207542 -57488212 + MIR SINE MIR 13 262 0 370 235 12 0 chr15 28207796 28207877 -57487877 + L1ME LINE L1 12 93 -5977 839 153 0 0 chr15 28207879 28207997 -57487757 + FLAM_C SINE Alu 1 118 -25 1554 247 48 53 chr15 28208020 28208469 -57487285 + L1ME LINE L1 81 531 -5539 1375 202 39 58 chr15 28208469 28208850 -57486904 - MLT1A2 LTR MaLR 0 374 1 1554 247 48 53 chr15 28208850 28208901 -57486853 + L1ME LINE L1 531 581 -5489 2330 114 0 0 chr15 28208901 28209208 -57486546 + AluSg SINE Alu 1 307 -3 1554 247 48 53 chr15 28209208 28209313 -57486441 + L1ME LINE L1 581 684 -5386 2362 93 3 6 chr15 28209400 28209712 -57486042 + AluY SINE Alu 1 311 0 258 156 0 0 chr15 28209962 28210007 -57485747 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 1371 209 6 62 chr15 28210190 28210327 -57485427 + AluJb SINE Alu 1 144 -168 2374 77 0 3 chr15 28210327 28210614 -57485140 - AluSc SINE Alu -23 286 1 1371 209 6 62 chr15 28210614 28210796 -57484958 + AluJb SINE Alu 144 302 -10 463 31 31 0 chr15 28210917 28210982 -57484772 + (TA)n Simple_repeat Simple_repeat 1 67 0 1861 182 0 0 chr15 28210982 28211278 -57484476 - AluSx SINE Alu -16 296 1 2279 113 7 0 chr15 28211397 28211707 -57484047 + AluSx SINE Alu 1 312 0 1417 170 3 95 chr15 28211715 28212032 -57483722 + AluSx SINE Alu 14 301 -11 273 239 161 31 chr15 28212284 28212414 -57483340 + MIR SINE MIR 61 207 -55 2381 89 0 0 chr15 28212415 28212707 -57483047 + AluSg SINE Alu 2 293 -17 261 0 0 0 chr15 28212708 28212737 -57483017 + (CA)n Simple_repeat Simple_repeat 2 30 0 2141 91 31 0 chr15 28213349 28213635 -57482119 + AluSq SINE Alu 7 301 -12 1827 86 9 0 chr15 28213804 28214036 -57481718 + AluSq SINE Alu 66 299 -14 1852 127 49 18 chr15 28214343 28214627 -57481127 - AluJb SINE Alu -15 297 5 1963 103 53 13 chr15 28214896 28215197 -57480557 + AluSq SINE Alu 1 313 0 1556 117 74 27 chr15 28215321 28215578 -57480176 - AluSq SINE Alu -20 293 25 1063 102 0 0 chr15 28215600 28215737 -57480017 - AluSg/x SINE Alu -16 294 158 1473 194 110 59 chr15 28215749 28215803 -57479951 + L1MC5 LINE L1 7320 7370 -591 2028 131 7 0 chr15 28215803 28216109 -57479645 + AluSx SINE Alu 1 308 -4 1473 194 110 59 chr15 28216109 28216616 -57479138 + L1MC5 LINE L1 7370 7910 -51 2124 94 24 3 chr15 28216624 28216922 -57478832 + AluSx SINE Alu 1 304 -8 22 56 0 0 chr15 28218252 28218288 -57477466 + GC_rich Low_complexity Low_complexity 1 36 0 494 191 106 14 chr15 28219057 28219083 -57476671 - L1MA10 LINE L1 -1 6333 6308 581 268 61 32 chr15 28219083 28219363 -57476391 - L1ME1 LINE L1 -16 6150 5863 2494 81 0 0 chr15 28219880 28220189 -57475565 + AluSq SINE Alu 5 313 0 1767 185 17 0 chr15 28220343 28220645 -57475109 + 7SLRNA srpRNA srpRNA 1 307 -13 2350 66 0 0 chr15 28220647 28220936 -57474818 + AluY SINE Alu 17 305 -6 1150 183 9 14 chr15 28221233 28221452 -57474302 + AluJb SINE Alu 86 303 -9 2319 109 6 3 chr15 28222090 28222402 -57473352 + AluSq SINE Alu 1 313 0 292 262 107 0 chr15 28222459 28222543 -57473211 - Charlie2 DNA MER1_type -2689 93 1 2006 146 0 10 chr15 28222666 28222968 -57472786 + AluJb SINE Alu 1 299 -13 561 209 87 0 chr15 28222978 28223093 -57472661 + FLAM_A SINE Alu 1 125 -8 2853 206 58 16 chr15 28223104 28223894 -57471860 + L1M4 LINE L1 4345 5167 -979 2452 57 0 0 chr15 28223894 28224195 -57471559 + AluY SINE Alu 1 301 0 1884 127 30 23 chr15 28224206 28224334 -57471420 + AluSq SINE Alu 1 127 -186 2322 108 0 0 chr15 28224334 28224630 -57471124 + AluSg SINE Alu 1 296 -14 2379 76 0 0 chr15 28224630 28224948 -57470806 + AluSg SINE Alu 1 318 0 1884 127 30 23 chr15 28224948 28225115 -57470639 + AluSq SINE Alu 126 301 -12 1749 193 0 0 chr15 28225131 28225426 -57470328 + AluSx SINE Alu 1 295 -17 1208 128 10 15 chr15 28225443 28225639 -57470115 + AluSg/x SINE Alu 116 310 0 586 213 0 29 chr15 28225643 28225779 -57469975 + L1M4 LINE L1 5163 5294 -852 1822 119 8 0 chr15 28225779 28226032 -57469722 + AluSq SINE Alu 42 296 -17 2244 114 7 0 chr15 28226114 28226413 -57469341 - AluSx SINE Alu -11 301 1 771 187 0 8 chr15 28226441 28226575 -57469179 + AluJo SINE Alu 1 133 -169 557 273 204 14 chr15 28226652 28226868 -57468886 - MIR SINE MIR -3 259 3 2492 41 3 3 chr15 28226990 28227283 -57468471 - AluY SINE Alu -18 293 1 1511 181 25 7 chr15 28227460 28227736 -57468018 + AluJb SINE Alu 6 286 -26 25 31 0 0 chr15 28227736 28227768 -57467986 + AT_rich Low_complexity Low_complexity 1 32 0 772 175 11 73 chr15 28227781 28227958 -57467796 + AluJo SINE Alu 137 302 0 299 250 0 34 chr15 28228271 28228359 -57467395 + L2 LINE L2 3227 3311 -2 21 0 0 0 chr15 28228428 28228449 -57467305 + AT_rich Low_complexity Low_complexity 1 21 0 2334 75 3 14 chr15 28228454 28228749 -57467005 - AluSc SINE Alu -16 293 2 26 0 0 0 chr15 28229303 28229329 -57466425 + AT_rich Low_complexity Low_complexity 1 26 0 1596 97 5 5 chr15 28229598 28229814 -57465940 - AluSq SINE Alu -97 216 1 593 125 188 18 chr15 28229819 28229931 -57465823 - FLAM_C SINE Alu -2 141 11 2208 89 10 0 chr15 28229952 28230245 -57465509 - AluSp SINE Alu -15 298 3 214 329 119 19 chr15 28230347 28230557 -57465197 - L2 LINE L2 -527 2787 2557 972 156 81 6 chr15 28231261 28231434 -57464320 + AluSg1 SINE Alu 1 186 -123 638 214 19 31 chr15 28231434 28231593 -57464161 + AluSq SINE Alu 53 209 -104 1848 117 19 11 chr15 28232323 28232619 -57463135 + AluSx SINE Alu 23 320 0 1068 150 0 0 chr15 28232619 28232786 -57462968 + AluSq SINE Alu 135 301 -12 1749 193 0 0 chr15 28232802 28233097 -57462657 + AluSx SINE Alu 1 295 -17 1208 128 10 15 chr15 28233114 28233310 -57462444 + AluSg/x SINE Alu 118 312 0 695 163 21 146 chr15 28233314 28233450 -57462304 + L1M4 LINE L1 5163 5258 -888 1788 133 7 0 chr15 28233450 28233720 -57462034 + AluSq SINE Alu 42 313 0 695 163 21 146 chr15 28233720 28233823 -57461931 + L1M4 LINE L1 5258 5372 -774 2255 119 0 3 chr15 28233848 28234151 -57461603 - AluSx SINE Alu -10 302 1 535 180 180 0 chr15 28234233 28234344 -57461410 + FLAM_C SINE Alu 2 132 -1 2054 99 7 4 chr15 28234366 28234639 -57461115 + AluSp SINE Alu 23 296 -17 2135 127 7 0 chr15 28234721 28235020 -57460734 - AluSx SINE Alu -11 301 1 754 186 0 8 chr15 28235048 28235177 -57460577 + FLAM_C SINE Alu 1 128 -5 1516 114 82 28 chr15 28235441 28235696 -57460058 - AluSq SINE Alu -20 293 25 2175 108 3 3 chr15 28235718 28236014 -57459740 - AluSx SINE Alu -16 296 1 593 125 188 18 chr15 28236019 28236131 -57459623 - FLAM_C SINE Alu -2 141 11 2208 89 10 0 chr15 28236152 28236445 -57459309 - AluSp SINE Alu -15 298 3 214 329 119 19 chr15 28236547 28236757 -57458997 - L2 LINE L2 -527 2787 2557 702 137 111 0 chr15 28237462 28237579 -57458175 + AluSg1 SINE Alu 2 131 -178 1621 155 13 26 chr15 28237581 28237885 -57457869 + AluSx SINE Alu 1 300 -12 798 132 35 0 chr15 28238076 28238190 -57457564 + FLAM_C SINE Alu 1 118 -15 2333 63 3 72 chr15 28238597 28238915 -57456839 - AluSc SINE Alu -13 296 1 22 70 0 0 chr15 28239052 28239095 -57456659 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr15 28239568 28239598 -57456156 + AT_rich Low_complexity Low_complexity 1 30 0 726 174 16 0 chr15 28239871 28239992 -57455762 - FAM SINE Alu -19 166 44 318 50 0 0 chr15 28240123 28240163 -57455591 + (TA)n Simple_repeat Simple_repeat 2 41 0 2602 66 0 0 chr15 28240163 28240466 -57455288 - AluSg SINE Alu -7 303 1 1055 60 8 0 chr15 28240500 28240634 -57455120 + L1MA1 LINE L1 6159 6293 -9 2414 89 3 0 chr15 28240867 28241169 -57454585 + AluSp SINE Alu 2 304 -9 2215 114 3 0 chr15 28241867 28242164 -57453590 + AluSg SINE Alu 2 299 -11 21 0 0 0 chr15 28242294 28242315 -57453439 + AT_rich Low_complexity Low_complexity 1 21 0 313 203 0 0 chr15 28242847 28242911 -57452843 - MIR3 SINE MIR -25 183 120 2926 3 0 0 chr15 28242915 28243223 -57452531 + AluYa8 SINE Alu 1 308 -2 23 68 0 0 chr15 28243480 28243524 -57452230 + AT_rich Low_complexity Low_complexity 1 44 0 2449 59 3 0 chr15 28243933 28244222 -57451532 - AluY SINE Alu -21 290 1 2366 75 10 0 chr15 28245231 28245523 -57450231 + AluSg SINE Alu 1 295 -15 2184 103 3 13 chr15 28245557 28245858 -57449896 + AluY SINE Alu 1 298 -13 2246 90 13 19 chr15 28246315 28246627 -57449127 + AluSg SINE Alu 1 310 0 261 114 0 0 chr15 28247069 28247104 -57448650 + tRNA-Met-e tRNA tRNA 1 35 -40 21 0 0 0 chr15 28248352 28248373 -57447381 + AT_rich Low_complexity Low_complexity 1 21 0 1617 129 0 21 chr15 28248425 28248665 -57447089 - AluSx SINE Alu -77 235 1 285 261 68 0 chr15 28249197 28249285 -57446469 - L1ME LINE L1 -412 5709 5616 28 48 0 0 chr15 28249332 28249374 -57446380 + AT_rich Low_complexity Low_complexity 1 42 0 387 181 105 38 chr15 28249444 28249549 -57446205 + L1ME4a LINE L1 5977 6088 -33 2251 134 0 0 chr15 28249555 28249862 -57445892 - AluSx SINE Alu -5 307 1 23 33 0 0 chr15 28249869 28249899 -57445855 + AT_rich Low_complexity Low_complexity 1 30 0 414 314 132 53 chr15 28250190 28250531 -57445223 + L2 LINE L2 2216 2529 -743 1726 162 13 16 chr15 28250531 28250840 -57444914 - AluJb SINE Alu -4 308 1 414 314 132 53 chr15 28250840 28251336 -57444418 + L2 LINE L2 2529 3159 -113 2490 45 0 19 chr15 28251336 28251644 -57444110 - AluY SINE Alu -9 302 1 414 314 132 53 chr15 28251644 28251768 -57443986 + L2 LINE L2 3159 3272 0 2407 65 3 3 chr15 28252620 28252912 -57442842 - AluSq SINE Alu -21 292 1 2365 88 7 3 chr15 28253880 28254186 -57441568 - AluSp SINE Alu -6 307 1 256 275 69 4 chr15 28254216 28254339 -57441415 - MIR SINE MIR -6 202 72 2006 130 14 0 chr15 28254416 28254701 -57441053 - AluSx SINE Alu -23 289 1 1624 186 6 38 chr15 28254786 28254975 -57440779 - AluJo SINE Alu 0 312 135 2305 91 0 10 chr15 28254975 28255273 -57440481 - AluSc SINE Alu -14 295 1 1624 186 6 38 chr15 28255273 28255401 -57440353 - AluJo SINE Alu -177 135 5 315 313 17 26 chr15 28255709 28255824 -57439930 - L1ME4a LINE L1 -222 5899 5786 2215 96 3 3 chr15 28255830 28256122 -57439632 - AluSg SINE Alu -18 292 1 22 35 0 0 chr15 28256133 28256162 -57439592 + AT_rich Low_complexity Low_complexity 1 29 0 3168 129 17 15 chr15 28256163 28256840 -57438914 + L1M2 LINE L1 5130 5809 -482 2115 138 7 0 chr15 28256845 28257143 -57438611 - AluSx SINE Alu -12 300 1 747 188 83 0 chr15 28257154 28257287 -57438467 - FRAM SINE Alu -14 162 19 2354 83 3 13 chr15 28257663 28257977 -57437777 + AluY SINE Alu 1 311 0 317 0 70 0 chr15 28258698 28258741 -57437013 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2232 82 3 40 chr15 28258794 28259098 -57436656 - AluSx SINE Alu -19 293 1 2417 83 0 10 chr15 28261701 28262013 -57433741 - AluY SINE Alu -2 309 1 2076 111 3 49 chr15 28262018 28262185 -57433569 - AluSx SINE Alu -19 293 145 2373 84 3 0 chr15 28262185 28262481 -57433273 - AluSx SINE Alu -15 297 1 2076 111 3 49 chr15 28262481 28262620 -57433134 - AluSx SINE Alu -167 145 1 1316 191 0 4 chr15 28262789 28263014 -57432740 + AluJb SINE Alu 85 308 -4 654 182 78 52 chr15 28263222 28263376 -57432378 + FRAM SINE Alu 1 158 -8 281 260 154 16 chr15 28263884 28264007 -57431747 - MIR3 SINE MIR -58 150 11 21 71 0 0 chr15 28264483 28264525 -57431229 + AT_rich Low_complexity Low_complexity 1 42 0 2306 100 0 3 chr15 28264632 28264933 -57430821 + AluSg SINE Alu 1 300 -10 2275 113 0 19 chr15 28265013 28265331 -57430423 + AluSx SINE Alu 1 312 0 719 186 0 8 chr15 28265339 28265463 -57430291 + FLAM_C SINE Alu 1 123 -20 1021 169 46 18 chr15 28265480 28265699 -57430055 + L1PB4 LINE L1 5932 6156 0 534 246 56 15 chr15 28265724 28265919 -57429835 + L1ME1 LINE L1 5959 6161 -5 1143 148 0 12 chr15 28266163 28266332 -57429422 - AluSg/x SINE Alu -18 294 128 560 199 15 0 chr15 28266740 28266871 -57428883 - L1MC4a LINE L1 -1813 5995 5863 * 4877 139 50 48 chr15 28266868 28268198 -57427556 + L1MA3 LINE L1 4976 6305 0 2152 110 10 7 chr15 28268272 28268573 -57427181 - AluSp SINE Alu -10 303 2 592 231 47 6 chr15 28268574 28268743 -57427011 - L1ME1 LINE L1 -261 5905 5730 186 43 0 0 chr15 28268747 28268770 -57426984 + (TC)n Simple_repeat Simple_repeat 1 23 0 283 241 72 0 chr15 28268770 28268853 -57426901 - L1MC4a LINE L1 -1948 5860 5772 435 119 0 0 chr15 28268869 28268936 -57426818 + (CA)n Simple_repeat Simple_repeat 2 68 0 2288 41 0 58 chr15 28268938 28269229 -57426525 - AluSp SINE Alu -23 290 17 949 123 0 12 chr15 28269734 28269897 -57425857 + MER3 DNA MER1_type 8 168 -41 1889 135 20 33 chr15 28270276 28270580 -57425174 - AluSx SINE Alu -12 300 1 2108 137 0 0 chr15 28270829 28271121 -57424633 - AluSx SINE Alu -20 292 1 2068 87 11 4 chr15 28271298 28271573 -57424181 + AluSx SINE Alu 22 298 -14 316 330 28 17 chr15 28271597 28271625 -57424129 - L1MEc LINE L1 -4343 2053 2027 1603 172 72 24 chr15 28271625 28271957 -57423797 - MER7A DNA MER2_type 0 346 1 316 330 28 17 chr15 28271957 28272104 -57423650 - L1MEc LINE L1 -4369 2027 1876 876 136 0 0 chr15 28272129 28272247 -57423507 + FLAM_C SINE Alu 6 123 -20 1806 141 4 0 chr15 28272494 28272763 -57422991 - AluSx SINE Alu -42 270 1 252 174 22 0 chr15 28272800 28272846 -57422908 - MER5A DNA MER1_type -121 68 22 333 172 0 0 chr15 28273060 28273118 -57422636 - AluS SINE Alu -244 59 2 370 211 59 0 chr15 28273135 28273234 -57422520 - L1M4 LINE L1 -3288 2858 2755 277 263 8 8 chr15 28273234 28273352 -57422402 + AluSc SINE Alu 1 118 -181 2133 106 6 44 chr15 28273729 28274089 -57421665 + L1MA7 LINE L1 5945 6290 -1 673 117 0 0 chr15 28274235 28274329 -57421425 + AluSg/x SINE Alu 196 289 -21 811 188 77 22 chr15 28274369 28274649 -57421105 - L1M LINE L1 -737 5429 5140 2306 114 3 0 chr15 28274670 28274976 -57420778 - AluSg SINE Alu -3 307 1 1554 147 41 75 chr15 28274987 28275148 -57420606 - AluJo SINE Alu -14 298 133 2195 101 7 0 chr15 28275148 28275446 -57420308 - AluSg SINE Alu -10 300 1 2292 96 0 3 chr15 28275453 28275754 -57420000 - AluSg SINE Alu -10 300 1 1554 147 41 75 chr15 28275754 28275877 -57419877 - AluJo SINE Alu -185 127 16 209 238 0 0 chr15 28275978 28276020 -57419734 + A-rich Low_complexity Low_complexity 1 42 0 260 267 40 0 chr15 28276041 28276191 -57419563 + (TA)n Simple_repeat Simple_repeat 2 157 0 1420 152 70 0 chr15 28276350 28276607 -57419147 - AluSx SINE Alu -19 293 19 1283 221 68 46 chr15 28276618 28277161 -57418593 + L1M4 LINE L1 2174 2728 -3418 421 109 0 0 chr15 28277731 28277795 -57417959 + AluSc SINE Alu 237 300 -9 2544 221 75 82 chr15 28277795 28278260 -57417494 + L1M4 LINE L1 3041 3508 -2638 1221 53 0 0 chr15 28278260 28278412 -57417342 - L1PA4 LINE L1 -4 6151 6000 2544 221 75 82 chr15 28278412 28278886 -57416868 + L1M4 LINE L1 3508 3984 -2162 2247 56 42 10 chr15 28278886 28279174 -57416580 + AluY SINE Alu 1 297 -14 240 27 0 0 chr15 28279174 28279211 -57416543 + Alu SINE Alu 264 300 0 2544 221 75 82 chr15 28279211 28279591 -57416163 + L1M4 LINE L1 3982 4389 -1757 214 226 32 48 chr15 28279676 28279738 -57416016 - MIR SINE MIR -200 62 2 2008 116 0 27 chr15 28279772 28280093 -57415661 + AluJb SINE Alu 1 313 0 212 218 0 149 chr15 28280099 28280122 -57415632 + MER5B DNA MER1_type 103 128 -50 723 155 110 58 chr15 28280122 28280277 -57415477 - FRAM SINE Alu -2 164 2 212 218 0 149 chr15 28280277 28280340 -57415414 + MER5B DNA MER1_type 128 176 -2 394 299 59 107 chr15 28280423 28280777 -57414977 + L2 LINE L2 2935 3271 -1 22 0 0 0 chr15 28281260 28281282 -57414472 + AT_rich Low_complexity Low_complexity 1 22 0 2110 106 6 37 chr15 28281640 28281962 -57413792 + AluSq SINE Alu 1 312 -1 276 290 144 9 chr15 28282226 28282466 -57413288 + L1ME LINE L1 5390 5662 -459 3000 157 54 2 chr15 28282875 28283104 -57412650 + Tigger1 DNA MER2_type 1836 2052 -366 1490 163 45 38 chr15 28283104 28283393 -57412361 + AluJo SINE Alu 12 302 -10 3000 157 54 2 chr15 28283393 28283717 -57412037 + Tigger1 DNA MER2_type 2052 2418 0 519 234 167 57 chr15 28284243 28284698 -57411056 + MLT1H LTR MaLR 79 583 -12 2150 101 7 0 chr15 28284858 28285135 -57410619 + AluSg SINE Alu 1 279 -31 1360 204 11 21 chr15 28287903 28288187 -57407567 + AluJo SINE Alu 1 281 -31 2016 112 3 24 chr15 28288347 28288634 -57407120 + AluSg SINE Alu 1 281 -29 1334 283 64 20 chr15 28288700 28289294 -57406460 + L1ME3A LINE L1 5551 6170 0 34 42 0 0 chr15 28289802 28289850 -57405904 + AT_rich Low_complexity Low_complexity 1 48 0 237 119 0 0 chr15 28289911 28289953 -57405801 + (TA)n Simple_repeat Simple_repeat 2 43 0 208 290 210 19 chr15 28290304 28290466 -57405288 + MIR3 SINE MIR 3 195 -13 1617 145 84 30 chr15 28290857 28291153 -57404601 - AluJo SINE Alu 0 312 1 26 50 0 0 chr15 28291752 28291792 -57403962 + AT_rich Low_complexity Low_complexity 1 40 0 2257 87 7 0 chr15 28292296 28292585 -57403169 + AluSx SINE Alu 1 291 -21 377 159 0 16 chr15 28292647 28292710 -57403044 + AluS SINE Alu 1 62 -241 1521 108 5 0 chr15 28292710 28292914 -57402840 + AluSg/x SINE Alu 107 311 -1 439 153 12 0 chr15 28293335 28293420 -57402334 - L1MB8 LINE L1 0 6178 6093 707 150 65 40 chr15 28293429 28293629 -57402125 - L1MB4 LINE L1 -1 6179 5975 270 164 16 16 chr15 28293633 28293694 -57402060 - L1MB4 LINE L1 -977 5356 5296 2118 124 10 10 chr15 28293712 28294018 -57401736 - AluSc SINE Alu -3 306 1 180 0 0 0 chr15 28294052 28294072 -57401682 + (TTCCC)n Simple_repeat Simple_repeat 4 23 0 21 0 0 0 chr15 28294293 28294314 -57401440 + AT_rich Low_complexity Low_complexity 1 21 0 1955 116 4 0 chr15 28294323 28294599 -57401155 - AluSg SINE Alu -17 293 17 1963 147 0 26 chr15 28295196 28295503 -57400251 + AluSx SINE Alu 1 299 -13 233 319 14 49 chr15 28296124 28296268 -57399486 + MLT1L LTR MaLR 140 278 -337 226 252 47 63 chr15 28296386 28296513 -57399241 + MLT1L LTR MaLR 483 607 -8 796 240 103 33 chr15 28297126 28297426 -57398328 + Charlie2 DNA MER1_type 9 329 -2453 * 893 207 42 78 chr15 28297418 28297722 -57398032 + Charlie2 DNA MER1_type 1856 2142 -720 2295 104 0 0 chr15 28297722 28298020 -57397734 + AluSx SINE Alu 1 298 -14 893 207 42 78 chr15 28298020 28298141 -57397613 + Charlie2 DNA MER1_type 2142 2266 -596 21 0 0 0 chr15 28298860 28298881 -57396873 + AT_rich Low_complexity Low_complexity 1 21 0 2214 89 0 0 chr15 28298931 28299236 -57396518 + AluSg SINE Alu 3 307 0 616 63 0 0 chr15 28299332 28299411 -57396343 + MADE1 DNA Mariner 1 79 -1 4257 44 22 13 chr15 28299565 28300108 -57395646 + L1PA5 LINE L1 5607 6154 0 21 0 0 0 chr15 28300198 28300219 -57395535 + AT_rich Low_complexity Low_complexity 1 21 0 281 392 48 16 chr15 28300690 28300815 -57394939 - L2 LINE L2 -21 3251 3123 527 130 57 16 chr15 28300935 28301058 -57394696 - L1PA6 LINE L1 -59 6095 5968 23 78 0 0 chr15 28501173 28501224 -57194530 + AT_rich Low_complexity Low_complexity 1 51 0 1260 233 66 44 chr15 28501243 28501608 -57194146 - MLT1A2 LTR MaLR -1 373 1 935 62 0 0 chr15 28502419 28502531 -57193223 + AluSg1 SINE Alu 1 112 -197 282 224 0 72 chr15 28502868 28502993 -57192761 - AluSc SINE Alu -165 134 19 1402 145 5 10 chr15 28502993 28503200 -57192554 - AluSx SINE Alu -105 207 2 485 267 48 29 chr15 28503258 28503464 -57192290 - L1MC5 LINE L1 -21 7940 7731 279 284 92 35 chr15 28503697 28503838 -57191916 - HAL1 LINE L1 -2358 149 1 883 143 0 0 chr15 28504243 28504369 -57191385 - AluJb SINE Alu -179 133 8 279 211 106 10 chr15 28504381 28504485 -57191269 - L2 LINE L2 -532 2782 2669 248 306 81 48 chr15 28504546 28504670 -57191084 + MIR SINE MIR 3 130 -132 32 0 0 0 chr15 28504956 28504988 -57190766 + AT_rich Low_complexity Low_complexity 1 32 0 1611 248 70 24 chr15 28505190 28505778 -57189976 - L1M4c LINE L1 -4786 1598 984 2317 112 0 0 chr15 28505788 28506091 -57189663 - AluSg SINE Alu -7 303 1 2051 116 0 13 chr15 28506105 28506408 -57189346 - AluSg SINE Alu -3 307 9 1360 181 133 24 chr15 28506526 28506554 -57189200 + L1MB5 LINE L1 5662 5686 -488 1557 160 0 8 chr15 28506554 28506804 -57188950 - AluSx SINE Alu -14 298 51 1360 181 133 24 chr15 28506804 28507151 -57188603 + L1MB5 LINE L1 5686 6078 -96 243 104 62 21 chr15 28507122 28507170 -57188584 + L1M4c LINE L1 2435 2484 -3900 * 695 150 8 33 chr15 28507248 28507368 -57188386 + FLAM_A SINE Alu 18 134 -8 28 48 0 0 chr15 28508169 28508211 -57187543 + AT_rich Low_complexity Low_complexity 1 42 0 743 203 0 0 chr15 28508211 28508329 -57187425 - FLAM_C SINE Alu -23 120 3 2213 71 10 20 chr15 28508444 28508738 -57187016 + AluY SINE Alu 1 291 -20 2418 82 0 3 chr15 28509173 28509478 -57186276 + AluY SINE Alu 1 304 -7 648 242 30 6 chr15 28509688 28509853 -57185901 + HAL1 LINE L1 1398 1566 -941 1783 110 4 4 chr15 28509853 28510098 -57185656 + AluSg SINE Alu 1 245 -65 33 43 0 0 chr15 28510120 28510167 -57185587 + AT_rich Low_complexity Low_complexity 1 47 0 692 103 9 9 chr15 28510350 28510457 -57185297 - AluSp SINE Alu -202 111 5 204 114 0 29 chr15 28511140 28511175 -57184579 + (TG)n Simple_repeat Simple_repeat 2 35 0 2521 61 7 3 chr15 28512166 28512476 -57183278 - AluY SINE Alu 0 311 1 193 339 101 0 chr15 28513198 28513307 -57182447 - MIR SINE MIR -85 177 58 2355 113 0 0 chr15 28513999 28514309 -57181445 + AluSx SINE Alu 1 310 -2 844 156 0 21 chr15 28514331 28514472 -57181282 + FLAM_C SINE Alu 2 139 -4 28 0 0 0 chr15 28514476 28514504 -57181250 + AT_rich Low_complexity Low_complexity 1 28 0 214 511 0 0 chr15 28514504 28514594 -57181160 + A-rich Low_complexity Low_complexity 1 90 0 1657 153 20 31 chr15 28514951 28515245 -57180509 - AluJo SINE Alu -21 291 1 209 259 19 0 chr15 28515617 28515671 -57180083 + MIR SINE MIR 81 135 -127 2260 96 0 7 chr15 28515861 28516154 -57179600 + AluSx SINE Alu 1 291 -21 1599 198 7 10 chr15 28516296 28516589 -57179165 + AluJo SINE Alu 1 292 -20 788 250 13 22 chr15 28516872 28517096 -57178658 + AluJo SINE Alu 87 308 -4 483 189 7 88 chr15 28517516 28517664 -57178090 + MER96B DNA MER1_type? 1 136 -281 209 329 51 15 chr15 28518192 28518329 -57177425 + L2 LINE L2 2910 3051 -221 2044 110 7 4 chr15 28519216 28519497 -57176257 - AluSx SINE Alu -30 282 1 342 200 12 59 chr15 28519571 28519656 -57176098 + MLT1F LTR MaLR 216 296 -294 1795 184 3 7 chr15 28519721 28520031 -57175723 - AluJo SINE Alu -3 309 1 423 240 90 22 chr15 28520031 28520195 -57175559 + MLT1F LTR MaLR 375 547 -2 2056 136 0 3 chr15 28520332 28520626 -57175128 - AluSx SINE Alu -17 295 3 653 214 143 9 chr15 28520626 28520836 -57174918 - MER46C DNA MER2_type -66 272 35 290 128 0 0 chr15 28520899 28520946 -57174808 - MER46C DNA MER2_type -288 50 4 226 281 0 24 chr15 28520950 28521032 -57174722 - MIR SINE MIR -65 197 118 1728 168 48 0 chr15 28521033 28521324 -57174430 + AluJb SINE Alu 1 305 -7 577 132 33 26 chr15 28521324 28521476 -57174278 + GA-rich Low_complexity Low_complexity 1 153 0 1900 178 0 3 chr15 28521706 28522010 -57173744 + AluJb SINE Alu 1 303 -9 2241 116 7 0 chr15 28522208 28522511 -57173243 + AluSq SINE Alu 1 305 -8 332 160 144 64 chr15 28522516 28522641 -57173113 + L1ME4a LINE L1 5986 6120 -1 447 292 30 39 chr15 28523022 28523255 -57172499 - L1ME4a LINE L1 -2 6119 5889 1980 108 251 0 chr15 28523255 28523597 -57172157 + MSTA LTR MaLR 1 428 0 2519 74 0 0 chr15 28523609 28523920 -57171834 - AluY SINE Alu 0 311 1 2248 123 7 0 chr15 28523923 28524224 -57171530 - AluSx SINE Alu -9 303 1 1477 170 19 23 chr15 28524237 28524502 -57171252 - AluJo SINE Alu -13 299 36 915 250 20 0 chr15 28524748 28524948 -57170806 - MER63A DNA MER1_type -6 204 1 2305 54 3 73 chr15 28524994 28525307 -57170447 + AluY SINE Alu 1 291 -20 481 282 57 30 chr15 28525329 28525591 -57170163 - L1ME4a LINE L1 -216 5905 5637 529 149 0 23 chr15 28525596 28525683 -57170071 - FRAM SINE Alu -17 159 75 251 305 37 0 chr15 28525683 28525765 -57169989 - L1ME4a LINE L1 -481 5640 5556 26 30 0 0 chr15 28525766 28525799 -57169955 + AT_rich Low_complexity Low_complexity 1 33 0 1648 157 15 4 chr15 28525799 28526061 -57169693 - AluJo SINE Alu -39 273 9 595 102 0 68 chr15 28526079 28526197 -57169557 - AluSp/q SINE Alu 0 313 204 2206 125 0 0 chr15 28526351 28526647 -57169107 - AluSx SINE Alu -16 296 1 2227 107 0 3 chr15 28527211 28527502 -57168252 - AluSx SINE Alu -20 292 3 210 156 0 0 chr15 28527654 28527699 -57168055 + A-rich Low_complexity Low_complexity 1 45 0 38 22 0 0 chr15 28527897 28527942 -57167812 + AT_rich Low_complexity Low_complexity 1 45 0 1935 209 97 33 chr15 28528481 28528968 -57166786 + MLT1F LTR MaLR 1 518 -24 2193 147 0 0 chr15 28528977 28529289 -57166465 - AluSx SINE Alu 0 312 1 28 48 0 0 chr15 28529633 28529675 -57166079 + AT_rich Low_complexity Low_complexity 1 42 0 22 89 0 0 chr15 28529725 28529770 -57165984 + AT_rich Low_complexity Low_complexity 1 45 0 1679 125 110 7 chr15 28529904 28530176 -57165578 + AluSx SINE Alu 1 300 -12 2299 115 0 0 chr15 28530562 28530874 -57164880 - AluSx SINE Alu 0 312 1 318 216 0 68 chr15 28531115 28531203 -57164551 + L1MC4 LINE L1 6443 6524 -1518 2176 306 79 18 chr15 28531203 28531439 -57164315 - ERVL LTR ERVL -2154 3610 3390 2484 69 0 10 chr15 28531439 28531744 -57164010 + AluY SINE Alu 1 302 -9 2176 306 79 18 chr15 28531744 28532405 -57163349 - ERVL LTR ERVL -2374 3390 2658 422 185 11 11 chr15 28532551 28532643 -57163111 - AluS SINE Alu -219 93 2 296 42 83 0 chr15 28532788 28532836 -57162918 + AluY SINE Alu 251 302 0 1673 251 53 69 chr15 28532836 28532939 -57162815 - ERVL LTR ERVL -3263 2501 2398 2093 134 0 7 chr15 28532939 28533237 -57162517 + AluSx SINE Alu 1 296 -16 1673 251 53 69 chr15 28533237 28533258 -57162496 - ERVL LTR ERVL -3366 2398 2378 186 118 0 0 chr15 28533258 28533292 -57162462 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 1673 251 53 69 chr15 28533292 28533748 -57162006 - ERVL LTR ERVL -3386 2378 1929 1023 225 152 23 chr15 28533890 28534519 -57161235 - LTR50 LTR ERVL -6 789 1 297 263 40 0 chr15 28534875 28534951 -57160803 + MLT1C LTR MaLR 1 79 -488 2213 99 10 3 chr15 28534953 28535246 -57160508 - AluSx SINE Alu -17 295 1 364 93 19 130 chr15 28535248 28535356 -57160398 - MER96B DNA MER1_type? -238 179 84 980 220 83 42 chr15 28535408 28535745 -57160009 + MLT1C LTR MaLR 50 400 -67 1233 86 0 3 chr15 28535879 28536101 -57159653 - AluSc SINE Alu -15 294 2 2289 108 0 19 chr15 28537009 28537325 -57158429 + AluSx SINE Alu 1 310 -2 2440 79 0 3 chr15 28538080 28538385 -57157369 + AluSg SINE Alu 1 304 -6 2331 92 0 7 chr15 28538385 28538680 -57157074 + AluSg SINE Alu 1 293 -17 32 91 0 0 chr15 28538883 28538971 -57156783 + AT_rich Low_complexity Low_complexity 1 88 0 2150 95 7 30 chr15 28538991 28539286 -57156468 - AluSp SINE Alu -25 288 1 1675 168 56 7 chr15 28539345 28539631 -57156123 - AluJo SINE Alu -12 300 1 1803 157 0 30 chr15 28540210 28540510 -57155244 - AluJo SINE Alu -17 295 5 26 0 0 0 chr15 28541142 28541168 -57154586 + AT_rich Low_complexity Low_complexity 1 26 0 491 292 5 32 chr15 28541378 28541563 -57154191 - MIR SINE MIR -25 237 58 508 326 60 5 chr15 28541693 28541911 -57153843 + MIR SINE MIR 31 260 -2 2596 67 0 0 chr15 28542207 28542506 -57153248 + AluSx SINE Alu 1 299 -13 385 62 73 17 chr15 28545071 28545152 -57150602 + MADE1 DNA Mariner 3 46 -34 333 267 83 8 chr15 28545152 28545272 -57150482 - MIR SINE MIR -123 139 11 2000 151 3 0 chr15 28546130 28546434 -57149320 + AluSg SINE Alu 1 305 -5 2478 62 0 7 chr15 28547164 28547468 -57148286 - AluY SINE Alu -9 302 1 202 167 0 69 chr15 28547490 28547562 -57148192 + (CACCC)n Simple_repeat Simple_repeat 2 68 0 609 158 137 14 chr15 28547779 28547918 -57147836 - L1MB5 LINE L1 -329 5845 5690 1525 130 49 12 chr15 28547923 28548169 -57147585 + AluSx SINE Alu 51 305 -7 500 156 10 0 chr15 28548183 28548279 -57147475 - L1MB5 LINE L1 -847 5299 5203 2420 98 0 0 chr15 28548279 28548584 -57147170 - AluSg SINE Alu -5 305 1 1830 133 54 0 chr15 28548593 28548872 -57146882 - AluSx SINE Alu -18 294 1 314 148 0 0 chr15 28548878 28548932 -57146822 + LTR37B LTR ERV1 237 290 -178 2124 121 3 3 chr15 28548935 28549232 -57146522 - AluSx SINE Alu -15 297 1 280 206 55 0 chr15 28549233 28549306 -57146448 - L1MB5 LINE L1 -951 5195 5119 * 1961 234 44 31 chr15 28549303 28549646 -57146108 - L1M4c LINE L1 -4606 2038 1701 2205 131 0 0 chr15 28549646 28549943 -57145811 - AluSx SINE Alu -15 297 1 1961 234 44 31 chr15 28549943 28550193 -57145561 - L1M4c LINE L1 -4943 1701 1456 2420 103 0 0 chr15 28550193 28550505 -57145249 - AluSx SINE Alu 0 312 1 1961 234 44 31 chr15 28550505 28550607 -57145147 - L1M4c LINE L1 -5188 1456 1 2865 37 6 26 chr15 28552572 28552920 -57142834 - L1PA6 LINE L1 0 6154 5814 2629 37 0 0 chr15 28552914 28553208 -57142546 - AluY SINE Alu -17 294 1 2194 120 13 0 chr15 28553213 28553513 -57142241 - AluSx SINE Alu -8 304 1 2108 118 10 0 chr15 28553848 28554137 -57141617 - AluSx SINE Alu -19 293 2 1392 220 46 21 chr15 28554162 28554564 -57141190 - L1ME1 LINE L1 -51 6115 5763 2023 137 3 13 chr15 28554951 28555251 -57140503 - AluSx SINE Alu -13 299 3 207 302 32 0 chr15 28556238 28556301 -57139453 + MIR3 SINE MIR 137 201 -7 2461 72 3 7 chr15 28557050 28557356 -57138398 + AluSp SINE Alu 1 305 -8 21 57 0 0 chr15 28557406 28557441 -57138313 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr15 28558108 28558139 -57137615 + AT_rich Low_complexity Low_complexity 1 31 0 853 168 8 0 chr15 28558159 28558290 -57137464 - FLAM_A SINE Alu -1 132 1 255 315 46 0 chr15 28558535 28558643 -57137111 - L1MEd LINE L1 -5737 382 270 249 210 49 12 chr15 28558724 28558805 -57136949 - L1MEd LINE L1 -6000 119 36 2180 122 0 13 chr15 28559133 28559444 -57136310 - AluSx SINE Alu -5 307 1 294 279 73 67 chr15 28560753 28560918 -57134836 + MIR SINE MIR 80 245 -17 1961 125 10 7 chr15 28562426 28562715 -57133039 - AluSx SINE Alu -22 290 1 2363 94 3 0 chr15 28563271 28563580 -57132174 + AluSq SINE Alu 1 310 -3 277 302 44 73 chr15 28564097 28564345 -57131409 - L2 LINE L2 -106 3166 2926 2175 106 0 13 chr15 28564449 28564751 -57131003 - AluSx SINE Alu -14 298 1 1829 164 0 7 chr15 28564756 28565055 -57130699 - AluJo SINE Alu -15 297 1 1825 136 9 67 chr15 28565170 28565500 -57130254 - AluSx SINE Alu -1 311 1 195 214 314 0 chr15 28565550 28565620 -57130134 - L2 LINE L2 0 3272 3181 671 185 138 0 chr15 28565680 28565810 -57129944 + MER2 DNA MER2_type 1 148 -197 994 169 182 9 chr15 28565827 28565901 -57129853 + AluJb SINE Alu 30 90 -222 225 0 0 0 chr15 28565901 28565926 -57129828 + (CAA)n Simple_repeat Simple_repeat 3 27 0 * 261 0 0 0 chr15 28565925 28565954 -57129800 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 994 169 182 9 chr15 28565926 28566104 -57129650 + AluJb SINE Alu 90 293 -19 247 26 184 0 chr15 28566107 28566145 -57129609 + MER2 DNA MER2_type 142 186 -159 2118 96 3 55 chr15 28566145 28566457 -57129297 + AluSx SINE Alu 1 296 -16 271 224 60 0 chr15 28567161 28567228 -57128526 - MIR SINE MIR -89 173 103 2155 107 13 3 chr15 28568404 28568702 -57127052 - AluSx SINE Alu -11 301 1 2251 123 7 0 chr15 28568702 28569010 -57126744 - AluSx SINE Alu -2 310 1 2051 109 0 0 chr15 28569146 28569413 -57126341 - AluSx SINE Alu -5 307 41 2210 107 3 3 chr15 28569525 28569814 -57125940 - AluSx SINE Alu -23 289 1 1409 192 52 4 chr15 28569889 28570160 -57125594 - AluJo SINE Alu -6 306 23 1889 175 0 7 chr15 28570163 28570466 -57125288 - AluJb SINE Alu -11 301 1 22 35 0 0 chr15 28570586 28570615 -57125139 + AT_rich Low_complexity Low_complexity 1 29 0 563 181 32 39 chr15 28570687 28570842 -57124912 - MER46A DNA MER2_type 0 236 83 1907 73 4 0 chr15 28570958 28571191 -57124563 - AluSp SINE Alu -79 234 1 24 0 0 0 chr15 28571197 28571221 -57124533 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr15 28572118 28572140 -57123614 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 266 313 10 10 chr15 28572339 28572438 -57123316 + GA-rich Low_complexity Low_complexity 3 101 0 308 88 18 0 chr15 28572538 28572595 -57123159 + (CAAAA)n Simple_repeat Simple_repeat 2 59 0 2186 112 0 3 chr15 28572738 28573044 -57122710 - AluSx SINE Alu 0 305 1 21 0 0 0 chr15 28574703 28574724 -57121030 + AT_rich Low_complexity Low_complexity 1 21 0 801 146 0 51 chr15 28574907 28575044 -57120710 - AluSq/x SINE Alu -181 131 2 731 133 9 0 chr15 28576031 28576136 -57119618 - U6 snRNA snRNA 0 107 2 2448 60 13 10 chr15 28576296 28576598 -57119156 - AluSp SINE Alu -10 303 1 2084 13 0 0 chr15 28577356 28577582 -57118172 - AluYb8 SINE Alu 0 318 93 2103 106 39 0 chr15 28577838 28578121 -57117633 - AluSx SINE Alu -18 294 1 326 228 28 110 chr15 28578912 28579057 -57116697 - L2 LINE L2 0 3313 3181 368 283 107 21 chr15 28579252 28579439 -57116315 + MIR SINE MIR 25 227 -35 2180 93 3 13 chr15 28580255 28580386 -57115368 + AluSc SINE Alu 3 134 -175 2679 42 0 6 chr15 28580386 28580699 -57115055 + AluY SINE Alu 1 311 0 2180 93 3 13 chr15 28580699 28580869 -57114885 + AluSc SINE Alu 134 301 -8 360 0 0 0 chr15 28581724 28581764 -57113990 + (CA)n Simple_repeat Simple_repeat 2 41 0 781 221 51 41 chr15 28581790 28582066 -57113688 + L1MC4a LINE L1 5400 5639 -535 1103 162 0 0 chr15 28582386 28582559 -57113195 + MER2 DNA MER2_type 1 173 -172 285 146 42 0 chr15 28582642 28582690 -57113064 + MER2 DNA MER2_type 267 316 -29 2238 125 0 0 chr15 28582701 28583006 -57112748 - AluJb SINE Alu -7 305 1 321 313 20 0 chr15 28583493 28583592 -57112162 + GA-rich Low_complexity Low_complexity 2 102 0 2672 252 102 45 chr15 28583812 28584608 -57111146 - L2 LINE L2 -14 3299 2411 2467 77 0 0 chr15 28584608 28584907 -57110847 + AluSg SINE Alu 2 300 -10 2672 252 102 45 chr15 28584907 28585335 -57110419 - L2 LINE L2 -902 2411 2009 815 160 45 0 chr15 28585337 28585493 -57110261 + L1 LINE L1 3775 3937 -2209 366 264 114 6 chr15 28585501 28585670 -57110084 + L1MC4a LINE L1 5783 5967 -201 2137 135 3 0 chr15 28586260 28586563 -57109191 - AluSq SINE Alu -9 304 1 21 0 0 0 chr15 28586849 28586870 -57108884 + AT_rich Low_complexity Low_complexity 1 21 0 2311 102 0 10 chr15 28586870 28587173 -57108581 + AluSx SINE Alu 1 300 -12 2170 206 113 8 chr15 28587469 28587975 -57107779 + L1ME1 LINE L1 5604 6162 -4 862 142 0 57 chr15 28587979 28588120 -57107634 - FLAM_A SINE Alu 0 133 1 2401 68 3 0 chr15 28588612 28588905 -57106849 - AluY SINE Alu -17 294 1 2225 126 3 0 chr15 28589066 28589376 -57106378 - AluSx SINE Alu -1 311 1 466 342 161 6 chr15 28590317 28590665 -57105089 + L3 LINE CR1 1126 1527 -50 1172 220 84 85 chr15 28590936 28591594 -57104160 + L1MC5 LINE L1 7272 7928 -33 288 303 90 37 chr15 28591719 28591907 -57103847 + MIR SINE MIR 50 247 -15 1943 131 3 26 chr15 28591912 28592218 -57103536 + AluSx SINE Alu 1 299 -13 256 238 41 115 chr15 28592223 28592492 -57103262 + L1ME4a LINE L1 5862 6110 -11 1621 173 32 0 chr15 28592514 28592797 -57102957 - AluJo SINE Alu -20 292 1 2326 106 0 7 chr15 28595149 28595451 -57100303 - AluSx SINE Alu -12 300 1 225 0 0 0 chr15 28595648 28595673 -57100081 + (TCTCCC)n Simple_repeat Simple_repeat 3 27 0 10218 66 11 37 chr15 28595680 28597102 -57098652 + SVA Other Other 2 1386 0 345 207 115 11 chr15 28597382 28597469 -57098285 - MER5A DNA MER1_type -85 104 9 806 251 116 43 chr15 28597472 28597736 -57098018 - MLT1L LTR MaLR -46 569 275 805 42 42 0 chr15 28597736 28597832 -57097922 - HY3 scRNA scRNA -1 100 1 806 251 116 43 chr15 28597832 28597894 -57097860 - MLT1L LTR MaLR -340 275 219 191 320 216 24 chr15 28598136 28598261 -57097493 - MIR3 SINE MIR -26 182 34 713 251 11 17 chr15 28598579 28598758 -57096996 - MER5B DNA MER1_type 0 178 1 588 185 67 0 chr15 28598798 28598933 -57096821 + L1MA8 LINE L1 6147 6290 -1 659 190 161 11 chr15 28599514 28599688 -57096066 + L1MB7 LINE L1 4566 4765 -1381 2368 97 0 0 chr15 28599803 28600113 -57095641 + AluSx SINE Alu 1 310 -2 4429 174 40 31 chr15 28600114 28600172 -57095582 + L1MB7 LINE L1 5007 5063 -1121 2128 91 0 7 chr15 28600172 28600446 -57095308 + AluSp SINE Alu 39 310 -3 4429 174 40 31 chr15 28600446 28600759 -57094995 + L1MB7 LINE L1 5063 5372 -812 741 239 0 0 chr15 28600759 28600889 -57094865 + FLAM_A SINE Alu 1 130 -3 4429 174 40 31 chr15 28600889 28601680 -57094074 + L1MB7 LINE L1 5372 6174 -10 297 0 0 0 chr15 28602103 28602136 -57093618 + (TG)n Simple_repeat Simple_repeat 1 33 0 226 203 0 72 chr15 28602255 28602324 -57093430 + MER5B DNA MER1_type 114 177 -1 417 137 27 0 chr15 28603507 28603580 -57092174 + L1MEc LINE L1 50 124 -6272 279 0 0 0 chr15 28603587 28603618 -57092136 + (CA)n Simple_repeat Simple_repeat 2 32 0 756 194 8 8 chr15 28603618 28603744 -57092010 - AluJo SINE Alu -182 130 2 3409 211 30 34 chr15 28603746 28604298 -57091456 + L1MEc LINE L1 120 669 -5727 2340 84 7 7 chr15 28604298 28604597 -57091157 - AluSq SINE Alu -14 299 1 3409 211 30 34 chr15 28604597 28604898 -57090856 + L1MEc LINE L1 669 970 -5426 1562 181 45 7 chr15 28604915 28605202 -57090552 - AluJo SINE Alu -12 300 3 2500 64 0 0 chr15 28605235 28605531 -57090223 + AluY SINE Alu 1 296 -15 1432 181 40 22 chr15 28605533 28605809 -57089945 + AluJo SINE Alu 2 282 -30 228 35 0 0 chr15 28605814 28605843 -57089911 + (CAA)n Simple_repeat Simple_repeat 2 30 0 624 224 68 5 chr15 28605858 28606050 -57089704 + L1MEc LINE L1 2351 2554 -3661 2390 85 0 10 chr15 28606078 28606384 -57089370 + AluY SINE Alu 1 303 -8 779 273 61 34 chr15 28607279 28607572 -57088182 + Charlie2b DNA MER1_type 572 872 -1910 * 1061 209 193 54 chr15 28607567 28608069 -57087685 + Charlie2b DNA MER1_type 1291 1862 -920 291 105 5 4 chr15 28608075 28608285 -57087469 + AluSq SINE Alu 1 295 -5 * 624 144 8 34 chr15 28608283 28608401 -57087353 + Charlie2b DNA MER1_type 1873 1987 -795 863 150 81 62 chr15 28609235 28609395 -57086359 + FRAM SINE Alu 4 166 0 652 213 50 69 chr15 28609448 28609591 -57086163 + L1ME3A LINE L1 5908 6042 -120 2219 92 7 7 chr15 28609591 28609884 -57085870 - AluSx SINE Alu -19 293 1 652 213 50 69 chr15 28609884 28610003 -57085751 + L1ME3A LINE L1 6042 6162 0 1891 161 97 49 chr15 28610845 28611235 -57084519 + MLT2D LTR ERVL 2 410 -4 302 215 0 15 chr15 28611406 28611471 -57084283 + MLT1J2 LTR MaLR 61 124 -326 2135 114 0 0 chr15 28611757 28612069 -57083685 + AluSx SINE Alu 1 312 0 1979 143 7 0 chr15 28613010 28613304 -57082450 - AluSx SINE Alu -15 297 2 1260 81 55 150 chr15 28613405 28613678 -57082076 + L1PA13 LINE L1 5898 6144 -19 225 355 78 35 chr15 28614664 28614805 -57080949 + L2 LINE L2 2489 2635 -679 530 367 126 25 chr15 28614850 28615256 -57080498 + L2 LINE L2 2821 3267 -5 1815 161 0 41 chr15 28615506 28615822 -57079932 - AluJo SINE Alu -9 303 1 21 0 0 0 chr15 28616079 28616100 -57079654 + AT_rich Low_complexity Low_complexity 1 21 0 334 258 106 73 chr15 28616536 28616687 -57079067 + MIR3 SINE MIR 5 160 -48 504 191 22 0 chr15 28616687 28616776 -57078978 + MER20 DNA MER1_type 1 91 -128 1179 175 0 24 chr15 28616788 28616999 -57078755 + AluJo SINE Alu 86 291 -21 2218 215 43 41 chr15 28617001 28617558 -57078196 + MER74B LTR ERVL 65 622 0 471 182 30 20 chr15 28617574 28617673 -57078081 + MER20 DNA MER1_type 117 216 -3 2016 122 7 3 chr15 28617711 28617997 -57077757 - AluSx SINE Alu -11 301 15 1673 168 56 3 chr15 28620050 28620335 -57075419 + AluJb SINE Alu 1 300 -12 2319 91 0 0 chr15 28621041 28621339 -57074415 - AluSx SINE Alu -14 298 1 33 56 0 0 chr15 28622938 28622992 -57072762 + AT_rich Low_complexity Low_complexity 1 54 0 644 187 75 0 chr15 28622996 28623103 -57072651 - FLAM_A SINE Alu -18 115 1 1972 163 0 3 chr15 28623640 28623941 -57071813 + AluJo SINE Alu 1 300 -12 235 235 0 15 chr15 28623966 28624034 -57071720 - MER114 LTR ERV -580 68 2 21 71 0 0 chr15 28624316 28624358 -57071396 + AT_rich Low_complexity Low_complexity 1 42 0 1164 272 134 25 chr15 28624806 28625375 -57070379 - L1ME3 LINE L1 -211 5951 5321 2025 154 0 13 chr15 28625705 28626017 -57069737 - AluJb SINE Alu -4 308 1 1118 140 21 5 chr15 28626576 28626762 -57068992 - MER5A DNA MER1_type 0 189 1 883 171 48 0 chr15 28627631 28627777 -57067977 + MER58A DNA MER1_type 1 153 0 2385 82 0 0 chr15 28628257 28628550 -57067204 - AluSc SINE Alu 0 309 17 1677 104 33 62 chr15 28628577 28628884 -57066870 + L1MB8 LINE L1 5876 6173 -5 1845 171 0 19 chr15 28629402 28629712 -57066042 + AluJb SINE Alu 1 304 -8 1832 167 14 0 chr15 28630175 28630462 -57065292 - AluJb SINE Alu -21 291 1 2947 200 132 36 chr15 28630462 28631633 -57064121 + L1ME2 LINE L1 4887 6163 -1 754 208 0 0 chr15 28632329 28632459 -57063295 - FLAM_A SINE Alu -2 131 2 261 0 0 0 chr15 28632778 28632807 -57062947 + (TA)n Simple_repeat Simple_repeat 2 30 0 2032 119 10 23 chr15 28632808 28633110 -57062644 - AluJo SINE Alu -14 298 1 206 244 0 13 chr15 28633241 28633319 -57062435 + A-rich Low_complexity Low_complexity 4 80 0 205 243 314 0 chr15 28633492 28633562 -57062192 + MER5A DNA MER1_type 10 101 -88 241 269 0 15 chr15 28633953 28634020 -57061734 - MIR3 SINE MIR -36 172 107 21 0 0 0 chr15 28634897 28634918 -57060836 + GC_rich Low_complexity Low_complexity 1 21 0 770 145 145 21 chr15 28636437 28636582 -57059172 - FRAM SINE Alu -10 166 4 1857 149 10 7 chr15 28636749 28637051 -57058703 + AluJo SINE Alu 3 305 -7 249 310 0 60 chr15 28637393 28637493 -57058261 + L2 LINE L2 3138 3231 -41 516 257 127 40 chr15 28638052 28638328 -57057426 - L2 LINE L2 -5 3308 3009 387 306 127 6 chr15 28638361 28638518 -57057236 - L2 LINE L2 -690 2624 2449 322 228 89 49 chr15 28639011 28639134 -57056620 + L2 LINE L2 702 829 -2485 4567 230 103 39 chr15 28639136 28639222 -57056532 + L2 LINE L2 1051 1130 -2184 1990 100 37 4 chr15 28639222 28639516 -57056238 + AluSg SINE Alu 1 303 0 4567 230 103 39 chr15 28639516 28640296 -57055458 + L2 LINE L2 1130 1859 -1455 2153 113 0 10 chr15 28640296 28640589 -57055165 - AluSx SINE Alu -12 300 11 4567 230 103 39 chr15 28640589 28641208 -57054546 + L2 LINE L2 1859 2633 -681 295 146 10 15 chr15 28641377 28641440 -57054314 + MER110A LTR ERV1 383 464 -4 193 198 116 70 chr15 28641889 28641975 -57053779 + L3 LINE CR1 1463 1552 -25 2190 175 34 3 chr15 28642035 28642389 -57053365 - MLT1A1 LTR MaLR 0 365 1 636 189 85 0 chr15 28642502 28642608 -57053146 - FLAM_C SINE Alu -15 118 4 270 0 0 0 chr15 28643900 28643930 -57051824 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1603 164 0 53 chr15 28643933 28644214 -57051540 - AluJb SINE Alu -46 266 1 1740 160 41 3 chr15 28644479 28644772 -57050982 - AluJo SINE Alu -8 304 1 396 219 168 15 chr15 28644938 28645075 -57050679 - MER117 DNA MER1_type -39 158 1 2166 108 0 26 chr15 28648173 28648480 -57047274 + AluSx SINE Alu 1 299 -13 472 296 190 14 chr15 28649048 28649264 -57046490 - MIR SINE MIR -6 256 3 667 245 21 42 chr15 28649661 28649853 -57045901 + MIR SINE MIR 73 260 -2 325 265 147 0 chr15 28650144 28650246 -57045508 + L2 LINE L2 3180 3296 -17 811 161 0 8 chr15 28650526 28650644 -57045110 + AluJo SINE Alu 126 242 -70 2168 132 0 0 chr15 28651042 28651338 -57044416 - AluSg SINE Alu -14 296 1 473 265 20 77 chr15 28651505 28651717 -57044037 - MIR SINE MIR -27 235 37 1745 152 7 55 chr15 28651775 28652085 -57043669 - AluJo SINE Alu -17 295 1 719 281 208 19 chr15 28652483 28652540 -57043214 + L2 LINE L2 2637 2682 -631 2165 93 0 20 chr15 28652540 28652840 -57042914 - AluSx SINE Alu -18 294 1 719 281 208 19 chr15 28652840 28653351 -57042403 + L2 LINE L2 2682 3313 0 696 273 98 45 chr15 28653846 28654132 -57041622 + MLT1I LTR MaLR 109 409 0 2369 93 0 0 chr15 28654716 28655017 -57040737 - AluSx SINE Alu -8 304 4 26 30 0 0 chr15 28655369 28655402 -57040352 + AT_rich Low_complexity Low_complexity 1 33 0 2352 110 0 0 chr15 28655669 28655979 -57039775 - AluSx SINE Alu -2 310 1 1674 123 69 7 chr15 28656151 28656428 -57039326 - L1MA4 LINE L1 -6 6294 6001 207 0 0 0 chr15 28656440 28656463 -57039291 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2018 131 0 7 chr15 28656465 28656748 -57039006 - AluSx SINE Alu -31 281 1 9475 158 17 121 chr15 28656945 28657360 -57038394 - L1 LINE L1 -1764 5801 5344 2000 84 0 15 chr15 28657360 28657621 -57038133 - AluY SINE Alu -19 292 36 9475 158 17 121 chr15 28657621 28657763 -57037991 - L1 LINE L1 -2221 5344 5189 1112 216 17 4 chr15 28657763 28657999 -57037755 - AluJb SINE Alu -4 308 70 9475 158 17 121 chr15 28657999 28659893 -57035861 - L1 LINE L1 -2376 5189 3399 562 349 86 10 chr15 28659893 28660277 -57035477 - L3 LINE CR1 -636 941 529 2202 109 0 10 chr15 28660297 28660599 -57035155 + AluSx SINE Alu 1 299 -13 240 59 0 0 chr15 28660663 28660697 -57035057 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 298 310 259 25 chr15 28660729 28660968 -57034786 - L3 LINE CR1 -1075 502 208 4027 123 66 83 chr15 28661656 28662454 -57033300 + LTR1 LTR ERV1 1 785 0 452 290 165 10 chr15 28662488 28662688 -57033066 - MIR SINE MIR -19 243 13 222 37 0 0 chr15 28664243 28664270 -57031484 + (CA)n Simple_repeat Simple_repeat 2 28 0 2270 107 0 0 chr15 28664375 28664674 -57031080 - AluSq SINE Alu -14 299 1 513 276 32 0 chr15 28664874 28664997 -57030757 - MIR3 SINE MIR 0 208 82 333 242 57 81 chr15 28665083 28665207 -57030547 - L2 LINE L2 -8 3264 3144 567 271 44 17 chr15 28665852 28666033 -57029721 - MIR SINE MIR -66 196 11 193 340 21 21 chr15 28666048 28666145 -57029609 - MIR SINE MIR -92 116 20 1597 181 10 10 chr15 28669070 28669368 -57026386 + AluSg SINE Alu 11 308 -2 1938 132 7 3 chr15 28670056 28670345 -57025409 + AluJo SINE Alu 7 296 -16 899 216 108 5 chr15 28670493 28670678 -57025076 + MER20 DNA MER1_type 1 204 -15 5021 168 13 16 chr15 28673502 28674472 -57021282 + L1MB7 LINE L1 5208 6178 -6 659 194 71 68 chr15 28674482 28674734 -57021020 - L1MC5 LINE L1 -67 7894 7642 1868 122 0 72 chr15 28674734 28675038 -57020716 + AluSx SINE Alu 3 284 -28 186 71 0 0 chr15 28675041 28675069 -57020685 + (CAA)n Simple_repeat Simple_repeat 1 28 0 1901 108 8 0 chr15 28675069 28675328 -57020426 + AluSp SINE Alu 24 284 -29 258 247 32 21 chr15 28675522 28675615 -57020139 - L1MC5 LINE L1 -491 7470 7377 2229 121 0 0 chr15 28676533 28676831 -57018923 + AluSg SINE Alu 1 298 -12 827 196 0 0 chr15 28676940 28677078 -57018676 + FRAM SINE Alu 1 137 -39 432 0 0 0 chr15 28677079 28677127 -57018627 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 872 272 12 12 chr15 28677290 28677536 -57018218 - MIR SINE MIR -14 248 3 257 276 17 0 chr15 28677755 28677813 -57017941 + L2 LINE L2 3255 3313 0 234 317 0 0 chr15 28678333 28678393 -57017361 - L2 LINE L2 -5 3267 3208 1954 23 0 0 chr15 28678463 28678679 -57017075 + AluYb8 SINE Alu 1 216 -102 22 0 0 0 chr15 28679912 28679934 -57015820 + AT_rich Low_complexity Low_complexity 1 22 0 603 143 109 0 chr15 28679961 28680080 -57015674 - L1MB4 LINE L1 -4 6176 6045 1396 100 43 5 chr15 28680101 28680311 -57015443 - L1MA3 LINE L1 -1 6304 6087 876 151 6 19 chr15 28680632 28680791 -57014963 + AluSx SINE Alu 1 157 -155 21 0 0 0 chr15 28680984 28681005 -57014749 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 28681012 28681033 -57014721 + AT_rich Low_complexity Low_complexity 1 21 0 180 111 0 0 chr15 28681339 28681366 -57014388 + (A)n Simple_repeat Simple_repeat 1 27 0 1716 210 80 34 chr15 28681514 28681929 -57013825 + MER63B DNA MER1_type 1 434 -2 230 146 83 21 chr15 28684852 28684900 -57010854 - L1P3 LINE L1 -5095 780 730 22 0 0 0 chr15 28686131 28686153 -57009601 + AT_rich Low_complexity Low_complexity 1 22 0 603 143 109 0 chr15 28686180 28686299 -57009455 - L1MB4 LINE L1 -4 6176 6045 1396 100 43 5 chr15 28686320 28686530 -57009224 - L1MA3 LINE L1 -1 6304 6087 2132 120 0 3 chr15 28686851 28687150 -57008604 + AluSx SINE Alu 1 298 -14 2101 109 3 7 chr15 28687238 28687556 -57008198 + AluSg SINE Alu 1 317 0 632 315 88 55 chr15 28687725 28688331 -57007423 - L1MC4a LINE L1 -1876 5932 5307 243 224 19 109 chr15 28688541 28688630 -57007124 - L1P LINE L1 -1099 5047 4976 2383 103 0 0 chr15 28688630 28688942 -57006812 + AluSq SINE Alu 1 312 -1 243 224 19 109 chr15 28688942 28689008 -57006746 - L1P LINE L1 -1170 4976 4906 237 257 86 0 chr15 28689028 28689098 -57006656 - L1MC4a LINE L1 -1334 4812 4737 33 43 0 0 chr15 28690133 28690180 -57005574 + AT_rich Low_complexity Low_complexity 1 47 0 795 109 0 0 chr15 28690180 28690281 -57005473 - FLAM_A SINE Alu -22 120 20 255 189 0 19 chr15 28690618 28690671 -57005083 - MIR3 SINE MIR -38 170 119 243 0 0 0 chr15 28690796 28690823 -57004931 + (GA)n Simple_repeat Simple_repeat 2 28 0 423 0 0 0 chr15 28690827 28690874 -57004880 + (TG)n Simple_repeat Simple_repeat 1 47 0 249 33 0 0 chr15 28690873 28690903 -57004851 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 753 231 7 7 chr15 28690911 28691054 -57004700 - FRAM SINE Alu -33 143 1 1682 194 3 7 chr15 28691105 28691433 -57004321 + AluJb SINE Alu 1 312 0 1875 140 0 4 chr15 28691561 28691839 -57003915 - AluSx SINE Alu -15 297 21 861 141 96 34 chr15 28691943 28692120 -57003634 + MER53 DNA DNA 1 188 -1 3666 145 71 9 chr15 28694968 28695602 -57000152 + MER44D DNA MER2_type 32 704 -1 450 236 108 19 chr15 28695765 28695922 -56999832 - L2 LINE L2 -34 3279 3109 186 133 0 0 chr15 28696164 28696194 -56999560 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 404 280 87 43 chr15 28696240 28696472 -56999282 + L1MEd LINE L1 908 1128 -1362 567 40 0 0 chr15 28696472 28696546 -56999208 + (GAAA)n Simple_repeat Simple_repeat 4 77 0 404 280 87 43 chr15 28696546 28696666 -56999088 + L1MEd LINE L1 1128 1360 -1130 1195 146 3 90 chr15 28696667 28696989 -56998765 - AluSx SINE Alu -13 299 6 266 222 32 0 chr15 28697134 28697197 -56998557 + HAL1 LINE L1 1427 1491 -1016 227 212 106 59 chr15 28697314 28697484 -56998270 + HAL1b LINE L1 756 933 -415 649 185 134 25 chr15 28697499 28697656 -56998098 + MER5B DNA MER1_type 4 177 -1 861 107 8 0 chr15 28697656 28697777 -56997977 - FLAM_C SINE Alu -9 134 13 1356 174 18 14 chr15 28697949 28698167 -56997587 - MER20 DNA MER1_type 0 219 1 903 163 130 3 chr15 28698689 28698917 -56996837 + MER33 DNA MER1_type 1 215 -93 464 177 0 0 chr15 28698917 28698995 -56996759 + Tigger5 DNA MER2_type 1 78 -2245 247 184 0 0 chr15 28698995 28699033 -56996721 - Tigger5 DNA MER2_type -3 2320 2283 401 153 0 0 chr15 28699034 28699093 -56996661 + Tigger5 DNA MER2_type 2264 2322 -1 350 207 35 0 chr15 28699093 28699180 -56996574 + MER33 DNA MER1_type 213 302 -22 36795 96 12 16 chr15 28699196 28705363 -56990391 - L1PA7 LINE L1 -1 6153 11 361 293 50 0 chr15 28705571 28705670 -56990084 + MIR SINE MIR 40 143 -119 214 195 0 0 chr15 28706151 28706192 -56989562 + (TA)n Simple_repeat Simple_repeat 2 42 0 28 48 0 0 chr15 28706239 28706281 -56989473 + AT_rich Low_complexity Low_complexity 1 42 0 3150 110 75 20 chr15 28706282 28706790 -56988964 - L1MA4 LINE L1 -7 6293 5758 2661 40 0 0 chr15 28706790 28707093 -56988661 - AluY SINE Alu -8 303 1 234 317 0 0 chr15 28707163 28707223 -56988531 + L2 LINE L2 3208 3267 -5 257 276 17 0 chr15 28707744 28707802 -56987952 - L2 LINE L2 0 3313 3255 872 272 12 12 chr15 28708021 28708267 -56987487 + MIR SINE MIR 3 248 -14 432 0 0 0 chr15 28708430 28708478 -56987276 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 827 196 0 0 chr15 28708479 28708617 -56987137 - FRAM SINE Alu -39 137 1 2301 98 7 0 chr15 28708726 28709021 -56986733 - AluSg SINE Alu -13 297 1 309 363 102 64 chr15 28709771 28710132 -56985622 + L2 LINE L2 2850 3224 -48 357 200 0 0 chr15 28710244 28710324 -56985430 + MIR SINE MIR 183 262 0 198 0 0 0 chr15 28710379 28710401 -56985353 + (CA)n Simple_repeat Simple_repeat 2 23 0 * 243 0 0 0 chr15 28710400 28710427 -56985327 + (TC)n Simple_repeat Simple_repeat 1 27 0 1326 161 113 26 chr15 28710432 28710842 -56984912 + MLT1F LTR MaLR 69 539 -3 828 282 66 43 chr15 28711859 28712206 -56983548 + L1ME LINE L1 5433 5787 -334 1685 197 0 3 chr15 28712249 28712544 -56983210 + AluJo SINE Alu 1 294 -18 2116 72 0 11 chr15 28712582 28712845 -56982909 + AluY SINE Alu 35 294 -17 1286 166 5 23 chr15 28713051 28713268 -56982486 + AluJo SINE Alu 82 294 -18 1460 93 0 0 chr15 28713404 28713586 -56982168 + AluSg/x SINE Alu 129 310 -2 22 0 0 0 chr15 28713710 28713732 -56982022 + AT_rich Low_complexity Low_complexity 1 22 0 2670 100 3 3 chr15 28713732 28714091 -56981663 - L1PA3 LINE L1 -1 6154 5796 21 0 0 0 chr15 28714280 28714301 -56981453 + AT_rich Low_complexity Low_complexity 1 21 0 1102 186 0 0 chr15 28714382 28714565 -56981189 + AluSg/x SINE Alu 129 311 -1 22 0 0 0 chr15 28714688 28714710 -56981044 + AT_rich Low_complexity Low_complexity 1 22 0 6153 24 1 0 chr15 28714710 28715380 -56980374 - L1PA3 LINE L1 -1 6154 5484 1243 21 0 0 chr15 28715380 28715524 -56980230 - L1PA3 LINE L1 -2325 3821 3678 336 233 144 0 chr15 28715524 28715614 -56980140 + L2 LINE L2 3170 3272 0 291 162 95 27 chr15 28716590 28716664 -56979090 + MIR3 SINE MIR 121 199 -9 480 217 116 32 chr15 28717084 28717281 -56978473 + MIR SINE MIR 3 211 -51 270 164 55 0 chr15 28717243 28717298 -56978456 - MIR SINE MIR -4 258 201 * 2298 96 0 19 chr15 28717333 28717646 -56978108 + AluSc SINE Alu 1 307 -2 24 0 0 0 chr15 28718908 28718932 -56976822 + AT_rich Low_complexity Low_complexity 1 24 0 1499 234 123 10 chr15 28719778 28720344 -56975410 + MER115 DNA AcHobo 1 689 -4 936 196 0 0 chr15 28721520 28721683 -56974071 - FRAM SINE Alu -4 172 10 905 226 6 0 chr15 28722388 28722552 -56973202 - FRAM SINE Alu -1 165 1 239 243 216 43 chr15 28722949 28723160 -56972594 - L2 LINE L2 -338 2976 2712 1911 154 13 0 chr15 28723160 28723458 -56972296 - AluJb SINE Alu -10 302 1 239 243 216 43 chr15 28723458 28723501 -56972253 - L2 LINE L2 -602 2712 2678 319 262 107 16 chr15 28723710 28723832 -56971922 + L2 LINE L2 3138 3270 -2 706 226 53 11 chr15 28724100 28724290 -56971464 - L1MC1 LINE L1 -70 6263 6066 2172 122 7 0 chr15 28725885 28726179 -56969575 + AluSx SINE Alu 1 296 -16 218 269 104 0 chr15 28726200 28726267 -56969487 + MIR SINE MIR 47 120 -142 485 221 103 69 chr15 28727002 28727206 -56968548 - MIR SINE MIR -50 212 2 342 348 67 0 chr15 28727724 28727859 -56967895 - L2 LINE L2 -11 3261 3118 2243 94 14 0 chr15 28727910 28728198 -56967556 + AluSx SINE Alu 1 292 -20 185 323 93 57 chr15 28728417 28728770 -56966984 - L2 LINE L2 -338 2976 2611 929 146 0 141 chr15 28728890 28729103 -56966651 - AluJo SINE Alu -26 286 104 217 300 133 0 chr15 28729209 28729299 -56966455 + MIR3 SINE MIR 53 154 -54 1592 228 103 123 chr15 28729302 28729895 -56965859 + HsTC2 DNA Tc2 1 1735 -163 735 184 31 31 chr15 28729895 28729972 -56965782 + L1ME1 LINE L1 5695 5771 -395 1847 158 16 26 chr15 28729972 28730283 -56965471 + AluJo SINE Alu 1 308 -4 735 184 31 31 chr15 28730283 28730368 -56965386 + L1ME1 LINE L1 5770 5857 -309 2095 104 14 0 chr15 28730825 28731105 -56964649 + AluSx SINE Alu 9 292 -20 929 146 0 141 chr15 28731797 28732010 -56963744 - AluJb SINE Alu -26 286 104 188 300 133 0 chr15 28732116 28732206 -56963548 + MIR3 SINE MIR 53 154 -54 1413 237 101 126 chr15 28732209 28732805 -56962949 + HsTC2 DNA Tc2 1 1735 -163 1725 200 35 52 chr15 28732805 28732882 -56962872 + L1ME1 LINE L1 5695 5772 -394 1847 158 16 26 chr15 28732882 28733193 -56962561 + AluJo SINE Alu 1 308 -4 1725 200 35 52 chr15 28733193 28733595 -56962159 + L1ME1 LINE L1 5772 6166 0 491 173 54 113 chr15 28733600 28733656 -56962098 + HsTC2 DNA Tc2 1723 1781 -117 1508 186 7 17 chr15 28733656 28733947 -56961807 - AluJo SINE Alu -24 288 1 491 173 54 113 chr15 28733947 28733958 -56961796 + HsTC2 DNA Tc2 1781 1791 -107 2420 70 0 7 chr15 28733958 28734256 -56961498 - AluY SINE Alu -15 296 1 491 173 54 113 chr15 28734256 28734372 -56961382 + HsTC2 DNA Tc2 1791 1896 -2 1856 146 34 24 chr15 28734382 28734677 -56961077 - AluJo SINE Alu -14 298 1 2069 187 85 35 chr15 28735186 28735298 -56960456 + MLT1D LTR MaLR 1 106 -399 2259 113 0 3 chr15 28735298 28735599 -56960155 - AluSq SINE Alu -13 300 1 2069 187 85 35 chr15 28735599 28735967 -56959787 + MLT1D LTR MaLR 106 505 0 463 205 94 0 chr15 28736004 28736121 -56959633 + LTR33 LTR ERVL 2 129 -392 287 256 122 29 chr15 28736229 28736401 -56959353 + LTR33 LTR ERVL 334 521 0 264 264 0 0 chr15 28736487 28736540 -56959214 - MIR3 SINE MIR -7 201 149 912 304 150 41 chr15 28736548 28737591 -56958163 + L2 LINE L2 2040 3269 -3 1086 174 0 71 chr15 28738018 28738257 -56957497 - AluJo SINE Alu 0 309 86 2417 79 0 0 chr15 28738702 28739007 -56956747 - AluSx SINE Alu -7 305 1 278 327 158 5 chr15 28739533 28739735 -56956019 + MIR SINE MIR 16 248 -14 247 256 77 0 chr15 28741340 28741418 -56954336 - MER103 DNA DNA -61 105 22 567 286 63 49 chr15 28742229 28742656 -56953098 - L1MC4 LINE L1 -15 8027 7595 630 293 117 3 chr15 28742683 28742983 -56952771 - L1MC4 LINE L1 -569 7473 7140 384 237 163 0 chr15 28743441 28743576 -56952178 - MIR3 SINE MIR -7 201 45 21 36 0 0 chr15 28744179 28744207 -56951547 + GC_rich Low_complexity Low_complexity 1 28 0 329 296 17 108 chr15 28744336 28744633 -56951121 - L1M2 LINE L1 -5907 942 673 197 250 54 65 chr15 28746357 28746449 -56949305 - MIR SINE MIR -62 200 110 288 266 0 0 chr15 28747645 28747709 -56948045 - MIR3 SINE MIR -24 184 121 237 135 0 0 chr15 28747995 28748032 -56947722 + MLT1L LTR MaLR 192 228 -387 657 247 18 6 chr15 28748035 28748205 -56947549 + MLT1L LTR MaLR 439 610 -5 426 267 74 78 chr15 28748306 28748430 -56947324 + MIR SINE MIR 1 125 -137 2160 94 27 3 chr15 28748430 28748728 -56947026 - AluSc SINE Alu -4 305 1 426 267 74 78 chr15 28748728 28748820 -56946934 + MIR SINE MIR 125 216 -46 1248 176 76 113 chr15 28748938 28749223 -56946531 + L1MC5 LINE L1 7374 7668 -293 2114 88 4 0 chr15 28749223 28749486 -56946268 - AluSp SINE Alu -26 287 24 219 36 0 0 chr15 28749486 28749514 -56946240 + (TTG)n Simple_repeat Simple_repeat 1 28 0 1985 115 0 66 chr15 28749515 28749819 -56945935 - AluSx SINE Alu -26 286 3 1248 176 76 113 chr15 28749819 28750071 -56945683 + L1MC5 LINE L1 7666 7894 -67 5021 167 25 16 chr15 28750081 28751045 -56944709 - L1MB7 LINE L1 -6 6178 5199 194 0 39 0 chr15 28751045 28751071 -56944683 + (TG)n Simple_repeat Simple_repeat 2 28 0 5021 167 25 16 chr15 28751071 28751092 -56944662 - L1MB7 LINE L1 -985 5199 5180 3392 225 30 6 chr15 28751098 28751942 -56943812 - L1MB7 LINE L1 -2135 4011 3148 6699 217 24 51 chr15 28751947 28753445 -56942309 + L1MB4 LINE L1 3525 5062 -1084 739 205 0 8 chr15 28753445 28753567 -56942187 + FLAM_A SINE Alu 2 122 -11 6699 217 24 51 chr15 28753567 28753726 -56942028 + L1MB4 LINE L1 5062 5224 -922 222 37 0 0 chr15 28753726 28753753 -56942001 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1551 194 0 14 chr15 28753753 28754042 -56941712 - AluJo SINE Alu -26 286 2 6699 217 24 51 chr15 28754042 28754201 -56941553 + L1MB4 LINE L1 5223 5385 -761 1670 146 25 77 chr15 28754201 28754405 -56941349 + L1MB4 LINE L1 5830 6043 -137 2012 102 0 18 chr15 28754405 28754679 -56941075 + AluSx SINE Alu 27 295 -17 1670 146 25 77 chr15 28754679 28754744 -56941010 + L1MB4 LINE L1 6043 6110 -70 208 53 53 0 chr15 28754744 28754782 -56940972 + (TA)n Simple_repeat Simple_repeat 2 41 0 1944 142 3 0 chr15 28754792 28755080 -56940674 - AluSx SINE Alu -23 289 1 1670 146 25 77 chr15 28755080 28755162 -56940592 + L1MB4 LINE L1 6119 6174 -6 6699 217 24 51 chr15 28755162 28755207 -56940547 + L1MB4 LINE L1 5384 5339 -807 380 174 0 0 chr15 28755182 28755251 -56940503 + L1MB8 LINE L1 6089 6157 -21 * 905 285 87 76 chr15 28755248 28756323 -56939431 - L1M4 LINE L1 -1032 5114 4029 2039 143 3 3 chr15 28756460 28756767 -56938987 + AluSx SINE Alu 1 307 -5 1466 184 41 0 chr15 28756796 28757063 -56938691 - AluJo SINE Alu -34 278 1 21 36 0 0 chr15 28757354 28757382 -56938372 + AT_rich Low_complexity Low_complexity 1 28 0 207 175 0 0 chr15 28759008 28759048 -56936706 + GA-rich Low_complexity Low_complexity 2 41 0 34 42 0 0 chr15 28759132 28759180 -56936574 + GC_rich Low_complexity Low_complexity 1 48 0 23 0 0 0 chr15 28759376 28759399 -56936355 + GC_rich Low_complexity Low_complexity 1 23 0 210 91 0 0 chr15 28759438 28759471 -56936283 + (TGGGGG)n Simple_repeat Simple_repeat 5 37 0 334 310 76 0 chr15 28760498 28760656 -56935098 - MIR SINE MIR -3 259 90 1111 186 101 0 chr15 28761184 28761383 -56934371 - MER20 DNA MER1_type 0 219 1 1950 132 7 3 chr15 28761531 28761819 -56933935 - AluJo SINE Alu -17 295 7 2188 130 0 0 chr15 28762507 28762815 -56932939 - AluSg SINE Alu -2 308 1 389 281 91 63 chr15 28762838 28762925 -56932829 + L2 LINE L2 2884 2967 -346 960 178 17 28 chr15 28762925 28763105 -56932649 + MER45A DNA AcHobo 1 178 0 389 281 91 63 chr15 28763105 28763270 -56932484 + L2 LINE L2 2967 3143 -170 1245 247 123 24 chr15 28763302 28763944 -56931810 - L2 LINE L2 -61 3252 2537 872 242 47 19 chr15 28765460 28765736 -56930018 - L1MB8 LINE L1 0 6178 5889 22 0 0 0 chr15 28766172 28766194 -56929560 + AT_rich Low_complexity Low_complexity 1 22 0 1821 158 0 27 chr15 28766194 28766492 -56929262 - AluJb SINE Alu -22 290 1 2221 117 0 0 chr15 28766960 28767259 -56928495 + AluY SINE Alu 1 299 -12 21 36 0 0 chr15 28768424 28768452 -56927302 + GC_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr15 28768783 28768814 -56926940 + GC_rich Low_complexity Low_complexity 1 31 0 269 252 223 0 chr15 28769274 28769413 -56926341 + MIR SINE MIR 83 252 -10 274 265 51 51 chr15 28770098 28770215 -56925539 - MIR SINE MIR -62 200 84 1247 153 0 38 chr15 28771360 28771569 -56924185 - AluJb SINE Alu -111 201 1 2269 117 0 0 chr15 28772037 28772346 -56923408 + AluY SINE Alu 1 309 -2 414 241 55 28 chr15 28772432 28772577 -56923177 + L2 LINE L2 2665 2813 -501 2323 104 0 0 chr15 28772910 28773207 -56922547 - AluSx SINE Alu -15 297 1 480 253 180 64 chr15 28773321 28773361 -56922393 - MIR SINE MIR 0 262 228 333 0 0 0 chr15 28773361 28773398 -56922356 + (TG)n Simple_repeat Simple_repeat 2 38 0 1565 128 66 29 chr15 28773404 28773647 -56922107 - AluSg SINE Alu -58 252 1 480 253 180 64 chr15 28773647 28773832 -56921922 - MIR SINE MIR -38 224 3 862 214 136 8 chr15 28774209 28774466 -56921288 - LTR33 LTR ERVL 0 521 232 359 298 0 26 chr15 28774496 28774610 -56921144 - LTR33 LTR ERVL -388 133 23 279 114 0 0 chr15 28774707 28774751 -56921003 + (TCCA)n Simple_repeat Simple_repeat 2 45 0 415 186 97 97 chr15 28774969 28775114 -56920640 - MLT1K LTR MaLR 0 588 444 249 307 13 0 chr15 28775310 28775385 -56920369 - MLT1K LTR MaLR -418 170 95 237 294 111 32 chr15 28775864 28775990 -56919764 + MIR SINE MIR 24 159 -103 251 239 14 0 chr15 28776035 28776106 -56919648 + (TA)n Simple_repeat Simple_repeat 2 73 0 311 223 107 19 chr15 28776134 28776237 -56919517 - MIR SINE MIR -70 192 81 506 183 0 8 chr15 28777073 28777199 -56918555 + CT-rich Low_complexity Low_complexity 2 126 0 25 75 0 0 chr15 28777854 28777907 -56917847 + AT_rich Low_complexity Low_complexity 1 53 0 657 141 10 0 chr15 28780652 28780751 -56915003 - LTR12 LTR ERV1 0 714 615 250 227 57 23 chr15 28780753 28780841 -56914913 - LTR30 LTR ERV1 -79 643 553 1063 106 15 164 chr15 28780842 28781116 -56914638 - LTR12 LTR ERV1 -429 285 53 264 211 0 0 chr15 28781116 28781168 -56914586 - LTR30 LTR ERV1 -670 52 1 247 240 21 52 chr15 28782563 28782659 -56913095 - MIR SINE MIR -56 206 114 434 217 11 0 chr15 28782728 28782820 -56912934 - MER5A DNA MER1_type -88 101 9 238 268 99 0 chr15 28782817 28782888 -56912866 - MIR SINE MIR -96 112 35 * 402 74 0 0 chr15 28783554 28783608 -56912146 + (TCTG)n Simple_repeat Simple_repeat 3 56 0 4287 156 38 79 chr15 28783627 28784235 -56911519 + MER21A LTR ERV1 14 573 -358 2004 128 9 41 chr15 28784235 28784409 -56911345 - AluJo SINE Alu -3 309 148 2327 98 3 0 chr15 28784409 28784705 -56911049 - AluY SINE Alu -14 297 1 2004 128 9 41 chr15 28784705 28784849 -56910905 - AluJo SINE Alu -164 148 1 4287 156 38 79 chr15 28784849 28785166 -56910588 + MER21A LTR ERV1 573 901 -30 246 207 232 0 chr15 28785201 28785283 -56910471 - MIR SINE MIR -109 153 53 228 152 0 43 chr15 28785587 28785633 -56910121 - MER5B DNA MER1_type -134 44 1 2273 92 0 0 chr15 28785637 28785931 -56909823 + AluY SINE Alu 2 295 -16 186 194 15 90 chr15 28785953 28786020 -56909734 + L3 LINE CR1 139 200 -1377 400 163 380 0 chr15 28786780 28786909 -56908845 + MER104 DNA MER2_type 3 180 0 756 220 11 11 chr15 28787071 28787248 -56908506 - MER5B DNA MER1_type 0 178 2 438 204 150 20 chr15 28788021 28788168 -56907586 + L1MC5 LINE L1 7764 7929 -32 333 273 83 2 chr15 28789161 28789292 -56906462 - MIR SINE MIR -73 135 17 724 257 67 9 chr15 28789579 28789789 -56905965 - MIR SINE MIR -16 246 25 577 184 0 44 chr15 28790033 28790147 -56905607 + AluJo SINE Alu 26 134 -178 953 262 93 4 chr15 28790600 28790879 -56904875 + LTR16C LTR ERVL 188 491 0 1767 167 3 33 chr15 28790897 28791202 -56904552 + AluJb SINE Alu 1 296 -16 336 232 212 50 chr15 28791457 28791655 -56904099 + L2 LINE L2 3084 3313 0 2627 40 0 49 chr15 28791757 28792084 -56903670 + AluY SINE Alu 1 311 0 360 0 0 0 chr15 28792089 28792129 -56903625 + (TA)n Simple_repeat Simple_repeat 2 41 0 521 194 35 56 chr15 28792290 28792410 -56903344 - MIR SINE MIR -71 191 73 2792 98 0 8 chr15 28792410 28792788 -56902966 + THE1C LTR MaLR 1 375 0 521 194 35 56 chr15 28792788 28792811 -56902943 - MIR SINE MIR -189 73 51 2172 90 0 13 chr15 28792918 28793217 -56902537 - AluY SINE Alu -15 296 2 778 232 17 11 chr15 28793221 28793398 -56902356 + MER5B DNA MER1_type 1 178 0 434 264 43 7 chr15 28794074 28794214 -56901540 + MIR3 SINE MIR 4 148 -60 240 35 0 0 chr15 28795084 28795113 -56900641 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2002 147 0 13 chr15 28795966 28796272 -56899482 + AluSx SINE Alu 1 302 -10 3819 141 61 13 chr15 28796762 28796993 -56898761 + L1MB3 LINE L1 5445 5663 -520 300 53 0 0 chr15 28796993 28797031 -56898723 + (TA)n Simple_repeat Simple_repeat 2 39 0 3819 141 61 13 chr15 28797031 28797503 -56898251 + L1MB3 LINE L1 5663 6182 -1 492 99 0 0 chr15 28797512 28797583 -56898171 + (TA)n Simple_repeat Simple_repeat 1 71 0 436 281 72 26 chr15 28797669 28797822 -56897932 - MER117 DNA MER1_type -14 183 24 458 282 108 33 chr15 28798102 28798315 -56897439 + L1MC4 LINE L1 6772 7000 -1042 359 162 216 14 chr15 28798839 28798913 -56896841 - AluJb SINE Alu -19 283 195 2021 112 4 4 chr15 28799235 28799512 -56896242 + AluSx SINE Alu 1 277 -35 180 0 0 0 chr15 28799519 28799539 -56896215 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1699 52 5 0 chr15 28799700 28799910 -56895844 - L1PA5 LINE L1 -5 6149 5939 1247 185 143 0 chr15 28799912 28800150 -56895604 - AluJb SINE Alu -40 272 1 462 293 50 39 chr15 28800798 28800928 -56894826 - MIR3 SINE MIR -24 184 50 180 0 0 0 chr15 28800928 28800948 -56894806 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 462 293 50 39 chr15 28800948 28800998 -56894756 - MIR3 SINE MIR -158 50 2 293 222 63 32 chr15 28801582 28801708 -56894046 - L1ME4a LINE L1 -219 5902 5773 281 258 129 61 chr15 28802627 28802759 -56892995 - L3 LINE CR1 -3 1574 1434 725 281 96 39 chr15 28802920 28803254 -56892500 + MLT1K LTR MaLR 205 557 -31 196 140 60 0 chr15 28803951 28804001 -56891753 + (CATATA)n Simple_repeat Simple_repeat 5 57 0 352 264 51 76 chr15 28804122 28804187 -56891567 - L1ME4a LINE L1 -342 5779 5714 986 210 35 0 chr15 28804187 28804387 -56891367 + MER3 DNA MER1_type 1 207 -2 352 264 51 76 chr15 28804387 28804518 -56891236 - L1ME4a LINE L1 -407 5714 5588 265 274 125 53 chr15 28804509 28804626 -56891128 + L1ME4a LINE L1 5839 5946 -175 * 297 0 0 0 chr15 28804626 28804659 -56891095 + (CA)n Simple_repeat Simple_repeat 2 34 0 265 274 125 53 chr15 28804659 28804749 -56891005 + L1ME4a LINE L1 5946 6061 -60 2023 139 81 0 chr15 28804862 28805206 -56890548 + MSTA LTR MaLR 1 372 -56 1931 158 0 16 chr15 28805208 28805524 -56890230 - AluSx SINE Alu -1 311 1 753 200 79 30 chr15 28806015 28806180 -56889574 - FAM SINE Alu -2 173 1 2434 86 0 0 chr15 28806739 28807043 -56888711 - AluSx SINE Alu -8 304 1 24 0 0 0 chr15 28807629 28807653 -56888101 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr15 28808345 28808366 -56887388 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 2534 115 15 58 chr15 28808612 28809081 -56886673 + L1MA9 LINE L1 5864 6312 0 313 319 35 18 chr15 28809105 28809218 -56886536 + L2 LINE L2 3158 3272 0 1065 305 120 41 chr15 28810117 28810950 -56884804 + L2 LINE L2 2364 3263 -9 180 0 0 0 chr15 28811982 28812002 -56883752 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1669 155 39 14 chr15 28812002 28812279 -56883475 - AluJo SINE Alu -25 287 1 300 188 0 0 chr15 28812360 28812424 -56883330 + (CA)n Simple_repeat Simple_repeat 2 65 0 236 386 75 35 chr15 28813005 28813259 -56882495 + L2 LINE L2 2932 3195 -77 409 38 0 0 chr15 28814564 28814617 -56881137 - MADE1 DNA Mariner -27 53 1 336 24 0 0 chr15 28815069 28815110 -56880644 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 258 373 109 0 chr15 28815775 28815885 -56879869 - L2 LINE L2 0 3272 3151 196 283 178 56 chr15 28816920 28817100 -56878654 - L2 LINE L2 0 3313 3112 214 353 0 0 chr15 28817123 28817191 -56878563 - L2 LINE L2 -471 2843 2776 1689 134 0 0 chr15 28817191 28817437 -56878317 - AluSx SINE Alu -6 306 61 756 331 79 26 chr15 28817444 28817940 -56877814 - L2 LINE L2 -619 2695 2174 391 318 95 0 chr15 28818727 28818875 -56876879 + MIR SINE MIR 35 196 -66 25 0 0 0 chr15 28819334 28819359 -56876395 + AT_rich Low_complexity Low_complexity 1 25 0 251 241 84 48 chr15 28821630 28821713 -56874041 + MIR SINE MIR 118 203 -59 328 268 98 16 chr15 28822210 28822333 -56873421 - L2 LINE L2 -4 3309 3177 24 32 0 0 chr15 28822521 28822552 -56873202 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr15 28822811 28822833 -56872921 + AT_rich Low_complexity Low_complexity 1 22 0 597 226 28 94 chr15 28822834 28823005 -56872749 - L1MC5 LINE L1 -34 7927 7746 1717 116 0 8 chr15 28823005 28823256 -56872498 + AluSc SINE Alu 60 308 -1 597 226 28 94 chr15 28823256 28823478 -56872276 - L1MC5 LINE L1 -215 7746 7560 249 372 44 35 chr15 28823821 28823934 -56871820 + L2 LINE L2 3117 3230 -42 1530 188 44 0 chr15 28824759 28824888 -56870866 + AluJo SINE Alu 1 123 -189 285 29 0 0 chr15 28824888 28824922 -56870832 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1530 188 44 0 chr15 28824922 28825090 -56870664 + AluJo SINE Alu 123 311 -1 264 253 152 0 chr15 28825508 28825607 -56870147 + L2 LINE L2 3154 3267 -5 1861 155 14 0 chr15 28827021 28827326 -56868428 - AluJb SINE Alu 0 309 1 801 301 7 14 chr15 28827874 28828161 -56867593 + L2 LINE L2 2763 3047 -266 1342 244 28 19 chr15 28828163 28828551 -56867203 - LTR16A LTR ERVL 0 450 1 729 250 27 59 chr15 28828555 28828811 -56866943 + L2 LINE L2 3049 3296 -17 312 245 14 82 chr15 28828811 28828958 -56866796 + L1MC5 LINE L1 7752 7888 -73 713 291 167 34 chr15 28829485 28829928 -56865826 + L2 LINE L2 2812 3313 0 238 174 43 152 chr15 28830013 28830105 -56865649 + L2 LINE L2 2636 2717 -597 900 264 37 7 chr15 28830105 28830471 -56865283 - LTR33 LTR ERVL -82 439 6 563 277 73 47 chr15 28830473 28830831 -56864923 + L2 LINE L2 2853 3312 -1 191 250 0 0 chr15 28830966 28831002 -56864752 + L2 LINE L2 2609 2644 -670 1629 179 71 22 chr15 28831044 28831408 -56864346 - MSTD LTR MaLR -6 390 9 1595 184 4 4 chr15 28831448 28831720 -56864034 + AluJb SINE Alu 38 309 -3 1771 208 0 0 chr15 28831817 28832120 -56863634 - AluJb SINE Alu -9 303 1 1369 223 23 7 chr15 28832181 28832503 -56863251 + AluJo SINE Alu 1 312 0 423 284 163 5 chr15 28832585 28832800 -56862954 + L1ME3 LINE L1 5255 5503 -2305 2057 173 26 62 chr15 28832800 28833302 -56862452 - MLT1D LTR MaLR 0 505 22 310 287 16 16 chr15 28833901 28834030 -56861724 + L1ME3 LINE L1 5478 5606 -515 1299 210 55 18 chr15 28834099 28834442 -56861312 + L1ME3 LINE L1 5807 6162 0 907 246 55 64 chr15 28834469 28835014 -56860740 + L1MC4 LINE L1 6938 7477 -565 225 326 0 76 chr15 28835014 28835106 -56860648 - MER5B DNA MER1_type -86 92 8 2043 128 3 3 chr15 28835414 28835711 -56860043 + AluSq SINE Alu 1 297 -16 22 0 0 0 chr15 28835720 28835742 -56860012 + AT_rich Low_complexity Low_complexity 1 22 0 1242 137 0 9 chr15 28835753 28835972 -56859782 + L1MB3 LINE L1 5960 6176 -7 1323 163 7 58 chr15 28836138 28836433 -56859321 + L1MB7 LINE L1 5900 6179 -5 638 256 120 47 chr15 28836437 28837114 -56858640 + L1MC5 LINE L1 7289 7894 -67 2109 143 10 0 chr15 28837282 28837589 -56858165 + AluSx SINE Alu 1 310 -2 1845 244 73 4 chr15 28838104 28838584 -56857170 + MER69B DNA AcHobo 7 519 -707 414 238 40 0 chr15 28838647 28838773 -56856981 + L1M4 LINE L1 2150 2280 -3866 1910 194 90 11 chr15 28838782 28839335 -56856419 + MER69B DNA AcHobo 531 1127 -99 1193 157 0 20 chr15 28839335 28839352 -56856402 + L1MA7 LINE L1 5650 5666 -510 2074 124 10 0 chr15 28839352 28839481 -56856273 + AluSx SINE Alu 1 127 -185 2290 97 0 7 chr15 28839481 28839779 -56855975 + AluSg SINE Alu 1 296 -14 2074 124 10 0 chr15 28839779 28839940 -56855814 + AluSx SINE Alu 127 294 -18 1193 157 0 20 chr15 28839940 28840153 -56855601 + L1MA7 LINE L1 5666 5873 -303 334 259 99 23 chr15 28840153 28840284 -56855470 + L2 LINE L2 2920 3060 -212 3260 178 15 0 chr15 28840800 28841386 -56854368 + L1PB4 LINE L1 5548 6142 -14 195 186 0 0 chr15 28841414 28841457 -56854297 + (TA)n Simple_repeat Simple_repeat 1 43 0 816 244 111 11 chr15 28841625 28841895 -56853859 + MER5C DNA MER1_type 28 324 0 941 112 0 0 chr15 28842068 28842211 -56853543 + L1MA5A LINE L1 6136 6278 -19 433 197 95 7 chr15 28842286 28842433 -56853321 - L1M4 LINE L1 -896 5250 5091 * 637 169 58 0 chr15 28842432 28842586 -56853168 + L1M4 LINE L1 4929 5091 -1055 191 225 0 0 chr15 28842586 28842626 -56853128 + MER5B DNA MER1_type 138 177 -1 1334 140 149 69 chr15 28842710 28843060 -56852694 - MER51A LTR ERV1 0 634 257 243 111 0 0 chr15 28843058 28843094 -56852660 - MER51A LTR ERV1 -598 36 1 * 1877 153 10 3 chr15 28843173 28843480 -56852274 - AluJb SINE Alu -1 311 3 333 264 28 0 chr15 28843658 28843764 -56851990 - L1ME LINE L1 -462 5659 5551 339 306 11 94 chr15 28843811 28843862 -56851892 + L1M4 LINE L1 4171 4225 -1921 3179 120 17 77 chr15 28843862 28844138 -56851616 + MER34B LTR ERV1 1 292 -273 2353 74 7 3 chr15 28844138 28844434 -56851320 + AluY SINE Alu 1 297 -14 3179 120 17 77 chr15 28844434 28844670 -56851084 + MER34B LTR ERV1 292 475 -90 2146 108 0 14 chr15 28844670 28844980 -56850774 - AluSx SINE Alu 0 306 1 3179 120 17 77 chr15 28844980 28845066 -56850688 + MER34B LTR ERV1 475 565 0 339 306 11 94 chr15 28845066 28845108 -56850646 + L1M4 LINE L1 4225 4269 -1877 2324 82 0 23 chr15 28845108 28845413 -56850341 - AluY SINE Alu -13 298 1 339 306 11 94 chr15 28845413 28845498 -56850256 + L1M4 LINE L1 4269 4335 -1811 267 312 0 0 chr15 28845502 28845579 -56850175 - MER2 DNA MER2_type 0 345 269 892 151 0 70 chr15 28845662 28845750 -56850004 - MER2 DNA MER2_type -172 173 103 5885 58 30 16 chr15 28845750 28846519 -56849235 + LTR17 LTR ERV1 1 780 0 892 151 0 70 chr15 28846519 28846615 -56849139 - MER2 DNA MER2_type -242 103 2 22 0 0 0 chr15 28846632 28846654 -56849100 + AT_rich Low_complexity Low_complexity 1 22 0 1324 234 98 44 chr15 28846666 28846702 -56849052 + L1M4 LINE L1 4377 4410 -1736 2018 147 0 13 chr15 28846702 28847043 -56848711 + AluSx SINE Alu 1 312 0 1324 234 98 44 chr15 28847043 28847486 -56848268 + L1M4 LINE L1 4410 4901 -1245 1957 150 3 3 chr15 28847486 28847793 -56847961 - AluSx SINE Alu -5 307 1 1324 234 98 44 chr15 28847793 28847945 -56847809 + L1M4 LINE L1 4901 5043 -1103 875 163 132 36 chr15 28847961 28848212 -56847542 + MER33 DNA MER1_type 18 292 -32 1296 183 58 4 chr15 28848217 28848474 -56847280 + L1MC3 LINE L1 6673 6943 -842 235 286 226 0 chr15 28848588 28848672 -56847082 - L2 LINE L2 -16 3256 3154 246 193 23 45 chr15 28848850 28848938 -56846816 - L1MC4 LINE L1 -1340 6702 6617 273 57 0 0 chr15 28848942 28848977 -56846777 + (TA)n Simple_repeat Simple_repeat 1 35 0 3476 104 24 4 chr15 28848996 28849498 -56846256 - MER41E LTR ERV1 0 512 1 182 243 147 22 chr15 28850053 28850189 -56845565 + L2 LINE L2 2239 2391 -923 1076 256 81 77 chr15 28850346 28850853 -56844901 - L2 LINE L2 -1 3312 2804 239 132 26 0 chr15 28850859 28850897 -56844857 - L2 LINE L2 -1906 1408 1370 30 59 0 0 chr15 28851162 28851213 -56844541 + AT_rich Low_complexity Low_complexity 1 51 0 222 37 0 0 chr15 28851780 28851807 -56843947 + (TG)n Simple_repeat Simple_repeat 2 28 0 390 251 59 87 chr15 28851971 28852258 -56843496 + L1ME4a LINE L1 5629 5907 -214 248 150 0 0 chr15 28852309 28852349 -56843405 - MIR SINE MIR 0 262 223 1190 208 57 59 chr15 28852441 28852616 -56843138 - Charlie4a DNA MER1_type -1472 489 315 6822 40 5 0 chr15 28852616 28853641 -56842113 - L1PA6 LINE L1 -3 6151 5189 1190 208 57 59 chr15 28853641 28853772 -56841982 - Charlie4a DNA MER1_type -1646 315 185 2243 96 0 7 chr15 28853772 28854065 -56841689 + AluSx SINE Alu 7 297 -15 1190 208 57 59 chr15 28854065 28854195 -56841559 - Charlie4a DNA MER1_type -1776 185 53 1494 236 68 47 chr15 28854213 28854498 -56841256 + L2 LINE L2 2711 2989 -324 1600 195 46 6 chr15 28854498 28854826 -56840928 - MER58B DNA MER1_type 0 341 1 1494 236 68 47 chr15 28854826 28855121 -56840633 + L2 LINE L2 2989 3313 0 278 324 28 37 chr15 28855126 28855234 -56840520 - L3 LINE CR1 -430 1147 1041 475 288 212 17 chr15 28855290 28855582 -56840172 - L3 LINE CR1 -681 896 548 898 240 61 43 chr15 28855771 28856156 -56839598 + L1ME2 LINE L1 5741 6159 -7 282 364 164 14 chr15 28856349 28856635 -56839119 - L3 LINE CR1 -1107 470 142 410 260 240 7 chr15 28856793 28856943 -56838811 + MIR SINE MIR 51 235 -27 2086 121 29 13 chr15 28857654 28857961 -56837793 + AluSx SINE Alu 1 312 0 21 0 0 0 chr15 28857986 28858007 -56837747 + AT_rich Low_complexity Low_complexity 1 21 0 2163 130 0 0 chr15 28858056 28858355 -56837399 + AluSq SINE Alu 1 299 -14 2385 90 0 0 chr15 28858377 28858676 -56837078 - AluSx SINE Alu -13 299 1 559 287 130 9 chr15 28858676 28858892 -56836862 - MIR SINE MIR -1 261 20 211 226 226 20 chr15 28859980 28860082 -56835672 + L2 LINE L2 3147 3269 -3 22 35 0 0 chr15 28860491 28860520 -56835234 + AT_rich Low_complexity Low_complexity 1 29 0 2316 103 0 0 chr15 28860525 28860836 -56834918 - AluY SINE Alu 0 311 1 2406 84 0 7 chr15 28860843 28861152 -56834602 - AluSg SINE Alu -3 307 1 1947 154 3 7 chr15 28861154 28861446 -56834308 - AluSx SINE Alu -21 291 1 32 26 0 0 chr15 28861613 28861652 -56834102 + AT_rich Low_complexity Low_complexity 1 39 0 872 270 45 9 chr15 28861659 28861881 -56833873 - MIR SINE MIR -10 252 23 272 203 39 148 chr15 28861892 28861984 -56833770 + MER5A DNA MER1_type 45 121 -68 2411 86 0 0 chr15 28861984 28862288 -56833466 - AluSc SINE Alu -5 304 1 272 203 39 148 chr15 28862288 28862323 -56833431 + MER5A DNA MER1_type 121 158 -31 1369 202 62 35 chr15 28862410 28862845 -56832909 + HsTC2 DNA Tc2 1276 1898 0 2417 93 0 3 chr15 28862854 28863166 -56832588 + AluSx SINE Alu 1 311 -1 813 183 0 0 chr15 28863207 28863338 -56832416 + FLAM_C SINE Alu 1 131 -2 1211 174 41 9 chr15 28863493 28863711 -56832043 + AluJb SINE Alu 85 309 -3 824 138 0 72 chr15 28864145 28864187 -56831567 + MER41A LTR ERV1 400 443 -111 2443 60 0 7 chr15 28864187 28864487 -56831267 - AluY SINE Alu -13 298 1 824 138 0 72 chr15 28864487 28864611 -56831143 + MER41A LTR ERV1 443 554 0 10262 121 21 11 chr15 28864611 28866194 -56829560 + MER41A-int LTR ERV1 1 1599 -4347 3682 85 34 6 chr15 28866191 28866720 -56829034 + MER41B-int LTR ERV1 5403 5946 0 * 3281 124 36 2 chr15 28866723 28867248 -56828506 + MER41B LTR ERV1 5 547 -88 1562 179 19 51 chr15 28867539 28867679 -56828075 + AluJo SINE Alu 1 144 -168 2118 102 3 0 chr15 28867679 28867991 -56827763 + AluSp SINE Alu 1 313 0 1562 179 19 51 chr15 28867991 28868161 -56827593 + AluJo SINE Alu 144 302 -10 334 268 0 0 chr15 28869395 28869477 -56826277 + MIR SINE MIR 107 188 -74 198 255 99 57 chr15 28869716 28869857 -56825897 + L2 LINE L2 3152 3298 -15 444 214 7 43 chr15 28870194 28870334 -56825420 + LTR37B LTR ERV1 334 468 0 239 289 109 26 chr15 28870970 28871126 -56824628 - L1ME4a LINE L1 -1 6120 5952 1988 147 78 13 chr15 28871166 28871561 -56824193 - L1MB5 LINE L1 -8 6166 5746 229 283 0 0 chr15 28872437 28872490 -56823264 - L2 LINE L2 -16 3256 3204 396 59 0 0 chr15 28872493 28872544 -56823210 + (CA)n Simple_repeat Simple_repeat 2 52 0 494 226 62 0 chr15 28872551 28872697 -56823057 - MLT1J LTR MaLR -1 510 356 1897 152 13 13 chr15 28872724 28873076 -56822678 - AluJb SINE Alu 0 353 2 695 278 75 53 chr15 28873078 28873398 -56822356 - MLT1J LTR MaLR -160 351 25 2060 92 48 27 chr15 28873590 28873882 -56821872 - AluSq SINE Alu -15 298 1 606 255 247 27 chr15 28874627 28875046 -56820708 + MLT1H LTR MaLR 6 526 -23 22 0 0 0 chr15 28875341 28875363 -56820391 + AT_rich Low_complexity Low_complexity 1 22 0 2053 116 3 3 chr15 28875492 28875784 -56819970 - AluSp SINE Alu -21 292 1 2253 224 13 40 chr15 28875824 28876209 -56819545 + MLT1F LTR MaLR 1 368 -174 1411 171 16 32 chr15 28876209 28876524 -56819230 - L1MB8 LINE L1 0 6178 5869 2253 224 13 40 chr15 28876524 28876695 -56819059 + MLT1F LTR MaLR 368 542 0 259 370 55 11 chr15 28878299 28878480 -56817274 + L2 LINE L2 2628 2816 -498 237 125 62 16 chr15 28882376 28882440 -56813314 + (TAA)n Simple_repeat Simple_repeat 3 69 0 211 184 0 0 chr15 28882626 28882664 -56813090 + (TGGG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr15 28883903 28883926 -56811828 + AT_rich Low_complexity Low_complexity 1 23 0 357 315 102 32 chr15 28885267 28885483 -56810271 + L3 LINE CR1 212 442 -1135 2296 118 3 0 chr15 28885511 28885816 -56809938 - AluSx SINE Alu -6 306 1 316 277 40 79 chr15 28886762 28886852 -56808902 + L2 LINE L2 1471 1563 -1751 1071 206 0 18 chr15 28886852 28887071 -56808683 + MER20 DNA MER1_type 5 219 0 316 277 40 79 chr15 28887071 28887182 -56808572 + L2 LINE L2 1563 1664 -1650 1454 274 111 26 chr15 28887222 28887719 -56808035 + L2 LINE L2 2258 2796 -518 196 333 18 0 chr15 28887721 28887778 -56807976 + L2 LINE L2 3237 3294 -19 1582 183 61 26 chr15 28888128 28888505 -56807249 - MLT1B LTR MaLR 0 390 1 21 0 0 0 chr15 28888808 28888829 -56806925 + AT_rich Low_complexity Low_complexity 1 21 0 6759 112 27 16 chr15 28889030 28890089 -56805665 + MER11C LTR ERVK 1 1071 0 661 120 0 0 chr15 28890332 28890432 -56805322 - LTR12 LTR ERV1 0 714 615 329 178 44 33 chr15 28890435 28890525 -56805229 - LTR30 LTR ERV1 -80 642 552 403 179 28 117 chr15 28890525 28890704 -56805050 - LTR12 LTR ERV1 -429 285 123 235 250 0 0 chr15 28890708 28890760 -56804994 - LTR30 LTR ERV1 -670 52 1 313 374 0 17 chr15 28890760 28890875 -56804879 - MIR SINE MIR -66 142 30 258 227 0 0 chr15 28890932 28890998 -56804756 - L1ME4a LINE L1 -73 6048 5983 566 271 90 18 chr15 28891059 28891505 -56804249 - L1MEd LINE L1 -2701 3705 3228 737 275 108 30 chr15 28891525 28891689 -56804065 - L1MEd LINE L1 -3252 3154 3004 2492 61 0 0 chr15 28891689 28891985 -56803769 - AluY SINE Alu -15 296 1 737 275 108 30 chr15 28891985 28892423 -56803331 - L1MEd LINE L1 -3402 3004 2488 1721 158 25 76 chr15 28892423 28892524 -56803230 - MER7A DNA MER2_type -2692 346 241 2303 106 0 3 chr15 28892524 28892825 -56802929 - AluSq SINE Alu -13 300 1 1721 158 25 76 chr15 28892825 28893090 -56802664 - MER7A DNA MER2_type -2797 241 1 737 275 108 30 chr15 28893090 28893379 -56802375 - L1MEd LINE L1 -3918 2488 2223 502 265 105 56 chr15 28893541 28893700 -56802054 - L1MEd LINE L1 -4580 2007 1857 3502 129 9 5 chr15 28893700 28894258 -56801496 - L1PA15 LINE L1 0 6165 5606 2186 114 3 0 chr15 28894258 28894555 -56801199 - AluSx SINE Alu -1 311 14 502 265 105 56 chr15 28894555 28894992 -56800762 - L1MEd LINE L1 -4730 1857 1443 2515 69 0 0 chr15 28894992 28895297 -56800457 - AluY SINE Alu -6 305 1 2066 124 3 7 chr15 28895297 28895595 -56800159 - AluSx SINE Alu -15 297 1 502 265 105 56 chr15 28895595 28895719 -56800035 - L1MEd LINE L1 -5143 1444 1218 1953 92 48 4 chr15 28895977 28896249 -56799505 + AluSq SINE Alu 1 284 -29 2772 28 0 0 chr15 28896629 28896947 -56798807 + AluYb8 SINE Alu 1 318 0 1986 156 0 0 chr15 28896971 28897260 -56798494 + AluSx SINE Alu 1 289 -23 3496 238 124 17 chr15 28897352 28898580 -56797174 - L1M4 LINE L1 -1120 5026 3531 2082 131 0 3 chr15 28898580 28898885 -56796869 - AluSg SINE Alu -6 304 1 3496 238 124 17 chr15 28898885 28899432 -56796322 - L1M4 LINE L1 -2615 3531 3044 596 231 84 74 chr15 28899444 28899755 -56795999 - L1MEd LINE L1 -5311 1098 785 5986 8 0 0 chr15 28900354 28901058 -56794696 + L1HS LINE L1 5452 6155 0 294 241 55 35 chr15 28901074 28901219 -56794535 + L1MC4a LINE L1 5812 5959 -1849 26 0 0 0 chr15 28901331 28901357 -56794397 + AT_rich Low_complexity Low_complexity 1 26 0 1796 142 71 34 chr15 28902798 28903123 -56792631 - MER1B DNA MER1_type 0 337 1 332 231 259 21 chr15 28904221 28904364 -56791390 + MIR SINE MIR 85 261 -1 326 308 100 15 chr15 28904590 28904720 -56791034 - L2 LINE L2 0 3313 3173 1974 171 0 0 chr15 28905069 28905367 -56790387 - AluJb SINE Alu -14 298 1 365 280 93 18 chr15 28905374 28905599 -56790155 - L1MC/D LINE L1 -1993 5815 5574 261 194 69 28 chr15 28905612 28905684 -56790070 - MER5A DNA MER1_type -80 109 35 * 289 233 68 14 chr15 28905629 28905702 -56790052 + MER5A DNA MER1_type 113 189 0 226 297 237 0 chr15 28905943 28906061 -56789693 + MIR SINE MIR 47 192 -70 368 297 93 44 chr15 28906242 28906424 -56789330 - MIR SINE MIR -40 222 32 180 0 0 0 chr15 28907986 28908006 -56787748 + (T)n Simple_repeat Simple_repeat 1 20 0 31 68 0 0 chr15 28910265 28910324 -56785430 + AT_rich Low_complexity Low_complexity 1 59 0 6147 50 5 5 chr15 28910342 28911117 -56784637 - L1PA7 LINE L1 -7 6147 5373 * 26592 113 24 22 chr15 28911113 28915377 -56780377 - L1P LINE L1 -1865 4281 10 850 281 164 52 chr15 28915940 28916088 -56779666 + L2 LINE L2 2575 2705 -608 1686 193 23 0 chr15 28916088 28916389 -56779365 - AluJb SINE Alu -4 308 1 850 281 164 52 chr15 28916389 28916850 -56778904 + L2 LINE L2 2705 3270 -43 2139 128 0 0 chr15 28916850 28917148 -56778606 + AluSg SINE Alu 1 298 -12 850 281 164 52 chr15 28917148 28917192 -56778562 + L2 LINE L2 3270 3308 -5 23 54 0 0 chr15 28917420 28917457 -56778297 + AT_rich Low_complexity Low_complexity 1 37 0 458 17 17 0 chr15 28917911 28917970 -56777784 + (CA)n Simple_repeat Simple_repeat 1 60 0 1557 179 0 15 chr15 28917970 28918238 -56777516 - AluJo SINE Alu -21 291 28 23 54 0 0 chr15 28918289 28918326 -56777428 + AT_rich Low_complexity Low_complexity 1 37 0 499 350 79 35 chr15 28918492 28918832 -56776922 - L2 LINE L2 -41 3231 2877 30 27 0 0 chr15 28919119 28919156 -56776598 + AT_rich Low_complexity Low_complexity 1 37 0 216 311 126 11 chr15 28920331 28920514 -56775240 - L2 LINE L2 -809 2505 2302 22 0 0 0 chr15 28920597 28920619 -56775135 + AT_rich Low_complexity Low_complexity 1 22 0 263 338 101 0 chr15 28920869 28921017 -56774737 + MIR SINE MIR 100 262 0 1147 273 164 64 chr15 28921063 28921924 -56773830 - HAL1 LINE L1 0 2507 1561 1406 148 39 9 chr15 28921944 28922588 -56773166 - L1MA4 LINE L1 -5 6295 5567 1605 212 15 0 chr15 28922589 28922914 -56772840 + L1M2b LINE L1 1584 1913 -5296 518 259 150 11 chr15 28922915 28923201 -56772553 - HAL1 LINE L1 -1151 1356 1031 23 86 0 0 chr15 28923207 28923265 -56772489 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr15 28923398 28923419 -56772335 + AT_rich Low_complexity Low_complexity 1 21 0 1072 172 52 60 chr15 28923497 28923729 -56772025 - AluJb SINE Alu -2 310 81 543 247 114 14 chr15 28923753 28923972 -56771782 - L1MC5 LINE L1 -42 7919 7679 1173 254 53 25 chr15 28924177 28924450 -56771304 - L1ME LINE L1 -449 5721 5457 1877 154 3 19 chr15 28924450 28924761 -56770993 - AluJo SINE Alu -6 306 1 1173 254 53 25 chr15 28924761 28925066 -56770688 - L1ME LINE L1 -713 5457 5124 787 197 44 15 chr15 28925147 28925350 -56770404 - Charlie4 DNA MER1_type -9 1952 1744 679 216 27 6 chr15 28925592 28925811 -56769943 - Charlie4 DNA MER1_type -1659 302 45 506 193 0 44 chr15 28925821 28925935 -56769819 - LTR16C LTR ERVL -1 490 382 260 260 110 0 chr15 28926105 28926178 -56769576 - LTR16C LTR ERVL -378 113 33 3520 270 85 22 chr15 28926281 28927403 -56768351 - L1ME LINE L1 -1112 5034 3984 2019 147 3 0 chr15 28927403 28927703 -56768051 - AluSx SINE Alu -11 301 1 3520 270 85 22 chr15 28927703 28927821 -56767933 - L1ME LINE L1 -2162 3984 3875 2715 39 0 0 chr15 28927821 28928132 -56767622 - AluY SINE Alu 0 311 1 3520 270 85 22 chr15 28928132 28928607 -56767147 - L1ME LINE L1 -2271 3875 3210 231 162 0 0 chr15 28928602 28928639 -56767115 - L1MC1 LINE L1 -292 6041 6005 * 241 259 84 45 chr15 28928646 28928796 -56766958 + L2 LINE L2 2059 2259 -1055 1012 269 56 69 chr15 28928796 28929029 -56766725 + L2 LINE L2 2458 2684 -630 2106 128 0 0 chr15 28929029 28929318 -56766436 - AluSx SINE Alu -23 289 1 1012 269 56 69 chr15 28929318 28929533 -56766221 + L2 LINE L2 2684 2900 -414 2044 146 12 107 chr15 28930205 28930684 -56765070 - Tigger2a DNA MER2_type 0 434 1 824 304 119 32 chr15 28930890 28931642 -56764112 - L2 LINE L2 -1 3312 1968 576 312 91 85 chr15 28931786 28932502 -56763252 + L2 LINE L2 2550 3272 0 841 193 28 5 chr15 28933616 28933829 -56761925 + L1MA7 LINE L1 6074 6291 0 1615 199 3 0 chr15 28933923 28934240 -56761514 - L1 LINE L1 -2162 3984 3667 6651 82 7 6 chr15 28934240 28935227 -56760527 + L1PB1 LINE L1 5161 6148 -3 558 175 191 26 chr15 28935273 28935462 -56760292 - L1ME LINE L1 -3132 3014 2795 682 164 121 0 chr15 28936201 28936341 -56759413 + MER58C DNA MER1_type 59 215 0 735 256 49 49 chr15 28937044 28937290 -56758464 + MIR SINE MIR 10 255 -7 25 51 0 0 chr15 28938818 28938857 -56756897 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr15 28939122 28939147 -56756607 + AT_rich Low_complexity Low_complexity 1 25 0 2036 203 57 0 chr15 28939655 28940060 -56755694 - MSTA LTR MaLR 0 428 1 25 0 0 0 chr15 28940418 28940443 -56755311 + AT_rich Low_complexity Low_complexity 1 25 0 1430 148 33 60 chr15 28942659 28942990 -56752764 + MER33 DNA MER1_type 2 323 -1 424 240 16 156 chr15 28943542 28943913 -56751841 - L1MC4 LINE L1 -2 8040 7722 3298 35 0 0 chr15 28944729 28945123 -56750631 + L1PA4 LINE L1 5762 6155 0 270 227 84 59 chr15 28945234 28945353 -56750401 - L1ME3A LINE L1 -79 6091 5970 1642 251 118 14 chr15 28945413 28946185 -56749569 - L1ME3A LINE L1 -208 5962 5119 5237 189 110 19 chr15 28946211 28947484 -56748270 - L1MC4 LINE L1 0 8042 6654 308 204 31 82 chr15 28947432 28947530 -56748224 + L1MC4 LINE L1 6660 6752 -1290 * 549 251 40 54 chr15 28947593 28947743 -56748011 - L1MC4 LINE L1 -1343 6699 6551 2193 116 0 0 chr15 28947743 28948037 -56747717 - AluY SINE Alu -17 294 1 549 251 40 54 chr15 28948037 28948109 -56747645 - L1MC4 LINE L1 -1491 6551 6480 4513 164 43 52 chr15 28948135 28949044 -56746710 - MER54A LTR ERVL 0 901 1 41936 45 5 2 chr15 28949173 28954408 -56741346 - L1P LINE L1 -895 5251 1 251 254 107 49 chr15 28954491 28954613 -56741141 + L2 LINE L2 3182 3310 -3 719 172 57 0 chr15 28954665 28954787 -56740967 + FLAM_A SINE Alu 1 129 -4 448 289 14 50 chr15 28955377 28955595 -56740159 - L1ME LINE L1 -357 5764 5555 1643 161 3 67 chr15 28956877 28957193 -56738561 + AluJb SINE Alu 1 296 -16 7547 30 0 1 chr15 28957216 28958182 -56737572 + L1PA4 LINE L1 5185 6149 -6 812 263 154 24 chr15 28959477 28959937 -56735817 + L1MC/D LINE L1 5304 5823 -1985 5297 21 0 0 chr15 28959937 28960557 -56735197 + L1P LINE L1 3863 4482 -1664 571 169 0 0 chr15 28960713 28960802 -56734952 - AluJ/FLAM SINE Alu -223 89 1 526 216 96 112 chr15 28960930 28961091 -56734663 - L1MC4 LINE L1 -4 8038 7876 1954 148 3 3 chr15 28961091 28961395 -56734359 - AluSx SINE Alu -2 310 7 526 216 96 112 chr15 28961395 28961589 -56734165 - L1MC4 LINE L1 -166 7876 7689 21 36 0 0 chr15 28961826 28961854 -56733900 + AT_rich Low_complexity Low_complexity 1 28 0 223 300 0 0 chr15 28962225 28962285 -56733469 - L2 LINE L2 -4 3268 3209 201 248 209 57 chr15 28965228 28965333 -56730421 - L2 LINE L2 -11 3302 3182 822 281 163 17 chr15 28965685 28966090 -56729664 - L3 LINE CR1 -1 1576 1113 257 299 52 24 chr15 28966551 28966763 -56728991 - L3 LINE CR1 -870 707 417 436 182 159 0 chr15 28966990 28967122 -56728632 - L1MEc LINE L1 -4244 2152 2000 754 132 16 25 chr15 28967135 28967256 -56728498 + FLAM_C SINE Alu 1 120 -23 1387 247 22 43 chr15 28967302 28967763 -56727991 - L1M4 LINE L1 -1681 4465 4015 1614 95 32 0 chr15 28967778 28968030 -56727724 - L1MA2 LINE L1 -4 6300 6041 20356 153 34 36 chr15 28968169 28969961 -56725793 - L1MA2 LINE L1 -94 7629 5835 2047 115 13 13 chr15 28969961 28970265 -56725489 - AluY SINE Alu -7 304 1 20356 153 34 36 chr15 28970265 28972995 -56722759 - L1MA2 LINE L1 -1888 5835 3101 1932 123 27 3 chr15 28972995 28973288 -56722466 - AluSx SINE Alu -12 300 1 20356 153 34 36 chr15 28973288 28975319 -56720435 - L1MA2 LINE L1 -4622 3101 1051 307 130 0 0 chr15 28975319 28975365 -56720389 - U6 snRNA snRNA -61 46 1 20356 153 34 36 chr15 28975365 28976402 -56719352 - L1MA2 LINE L1 -6672 1051 13 1711 216 61 13 chr15 28976482 28976944 -56718810 - L1M4 LINE L1 -3218 2928 2445 1022 224 141 9 chr15 28976944 28977270 -56718484 - MLT1C LTR MaLR -93 374 6 2051 126 7 3 chr15 28978061 28978370 -56717384 - AluSx SINE Alu -2 310 1 186 303 204 0 chr15 28978906 28979038 -56716716 - L2 LINE L2 -37 3276 3118 639 39 0 0 chr15 28979241 28979319 -56716435 + (CTA)n Simple_repeat Simple_repeat 1 78 0 984 291 8 0 chr15 28979322 28979563 -56716191 - MIR SINE MIR -10 252 10 22 0 0 0 chr15 28979640 28979662 -56716092 + AT_rich Low_complexity Low_complexity 1 22 0 2088 122 0 0 chr15 28979840 28980154 -56715600 - AluSx SINE Alu 0 319 6 370 399 45 11 chr15 28980432 28980698 -56715056 - L2 LINE L2 -191 3081 2807 235 329 40 0 chr15 28980716 28980792 -56714962 + L2 LINE L2 2636 2714 -600 1834 28 0 0 chr15 28980967 28981178 -56714576 + AluYb8 SINE Alu 108 318 0 2286 118 0 0 chr15 28981210 28981516 -56714238 + AluSq SINE Alu 1 306 -7 1430 158 5 9 chr15 28981735 28981956 -56713798 + AluJo SINE Alu 1 220 -92 788 212 48 0 chr15 28982058 28982247 -56713507 + MER96B DNA MER1_type? 213 410 -7 325 305 6 67 chr15 28982255 28982419 -56713335 - ERVL LTR ERVL -1215 4549 4396 249 81 0 0 chr15 28982424 28982461 -56713293 - MER5B DNA MER1_type -1 177 141 525 131 12 0 chr15 28982462 28982546 -56713208 + MER5B DNA MER1_type 94 178 0 254 200 291 18 chr15 28982554 28982695 -56713059 - MER5A DNA MER1_type 0 189 4 450 345 32 53 chr15 28982727 28982801 -56712953 - ERVL LTR ERVL -4457 1197 1123 2128 113 7 3 chr15 28982801 28983102 -56712652 - AluSx SINE Alu -10 302 1 450 345 32 53 chr15 28983102 28983462 -56712292 - ERVL LTR ERVL -4531 1123 772 1490 148 19 12 chr15 28984391 28984648 -56711106 + L1PB3 LINE L1 5893 6151 -3 355 265 95 74 chr15 28988332 28988462 -56707292 - L1MC5 LINE L1 -47 7914 7788 1876 135 10 20 chr15 28988462 28988766 -56706988 - AluSq SINE Alu -12 301 1 355 265 95 74 chr15 28988766 28989098 -56706656 - L1MC5 LINE L1 -173 7788 7435 15723 88 10 0 chr15 28989098 28992081 -56703673 - L1PA7 LINE L1 -7 6147 3144 355 265 95 74 chr15 28992081 28992209 -56703545 - L1MC5 LINE L1 -526 7435 7311 578 250 22 49 chr15 28992359 28992583 -56703171 - L1MC5 LINE L1 -740 7221 7004 236 194 177 0 chr15 28992678 28992740 -56703014 - L1ME3A LINE L1 -5 6165 6093 * 448 248 31 108 chr15 28992723 28992963 -56702791 - L1MC5 LINE L1 -1008 6953 6743 1818 83 0 0 chr15 28992963 28993205 -56702549 - L1PA7 LINE L1 -8 6146 5905 448 248 31 108 chr15 28993205 28993287 -56702467 - L1MC5 LINE L1 -1218 6743 6656 317 250 21 42 chr15 28993492 28993588 -56702166 - L1MC5 LINE L1 -889 7072 6979 369 314 18 14 chr15 28993676 28993896 -56701858 - L1MC4 LINE L1 -937 7105 6885 2640 43 0 0 chr15 28994542 28994844 -56700910 + AluY SINE Alu 1 302 -9 1457 198 42 4 chr15 28994936 28995199 -56700555 + AluJo SINE Alu 5 277 -35 185 217 43 0 chr15 28996184 28996230 -56699524 - L2 LINE L2 -15 3257 3210 278 295 117 20 chr15 28996247 28996376 -56699378 - MIR SINE MIR -104 104 15 367 276 60 30 chr15 28996432 28996566 -56699188 - MIR3 SINE MIR -41 167 30 230 220 132 22 chr15 28996709 28996800 -56698954 - L2 LINE L2 -68 3245 3145 315 318 37 19 chr15 28996977 28997084 -56698670 + MIR SINE MIR 42 150 -58 312 364 109 0 chr15 28997094 28997259 -56698495 + MER5A DNA MER1_type 7 189 0 3992 134 30 4 chr15 28997438 28998115 -56697639 - L1MA4A LINE L1 -8 6295 5602 23 0 0 0 chr15 28998237 28998260 -56697494 + AT_rich Low_complexity Low_complexity 1 23 0 1907 132 0 14 chr15 28998672 28998952 -56696802 + AluSx SINE Alu 1 276 -36 309 68 0 0 chr15 28998952 28998996 -56696758 + (CA)n Simple_repeat Simple_repeat 1 44 0 2419 73 0 10 chr15 28999043 28999346 -56696408 - AluY SINE Alu -11 300 1 2500 61 3 0 chr15 28999358 28999655 -56696099 - AluY SINE Alu -13 298 1 237 325 99 8 chr15 29000308 29000426 -56695328 - MIR SINE MIR -87 121 21 1629 189 0 24 chr15 29003037 29003334 -56692420 - AluJo SINE Alu -12 300 11 189 196 0 107 chr15 29003712 29003768 -56691986 - L2 LINE L2 -1 3271 3222 * 443 335 80 24 chr15 29003749 29003961 -56691793 - MIR SINE MIR -26 236 13 257 181 193 12 chr15 29004358 29004441 -56691313 - MIR SINE MIR -95 167 70 * 1161 244 133 37 chr15 29004421 29004803 -56690951 + L2 LINE L2 2397 2815 -499 1038 268 100 6 chr15 29004816 29005145 -56690609 + L2 LINE L2 2953 3312 -1 684 202 0 8 chr15 29005154 29005278 -56690476 + FLAM_C SINE Alu 5 127 -16 257 56 481 0 chr15 29005290 29005344 -56690410 + MADE1 DNA Mariner 1 80 0 308 304 20 20 chr15 29006780 29006882 -56688872 - MIR SINE MIR -61 147 46 719 247 68 44 chr15 29007026 29007322 -56688432 - L1ME4a LINE L1 -280 5841 5539 30 0 0 0 chr15 29007365 29007395 -56688359 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr15 29007997 29008020 -56687734 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr15 29008147 29008181 -56687573 + AT_rich Low_complexity Low_complexity 1 34 0 196 276 46 35 chr15 29009131 29009218 -56686536 + MIR SINE MIR 25 112 -150 2204 119 0 0 chr15 29009839 29010134 -56685620 - AluSq SINE Alu -16 297 3 323 314 90 13 chr15 29010580 29010736 -56685018 - MIR SINE MIR -29 233 66 239 320 66 8 chr15 29010925 29011047 -56684707 - MER5B DNA MER1_type -29 149 21 2116 132 7 0 chr15 29011610 29011920 -56683834 - AluSx SINE Alu 0 312 1 660 264 90 0 chr15 29012237 29012438 -56683316 + MIR SINE MIR 44 262 0 21 0 0 0 chr15 29013095 29013116 -56682638 + AT_rich Low_complexity Low_complexity 1 21 0 2249 123 0 0 chr15 29013537 29013838 -56681916 + AluSx SINE Alu 1 301 -11 22 56 0 0 chr15 29014059 29014095 -56681659 + AT_rich Low_complexity Low_complexity 1 36 0 268 292 130 21 chr15 29015603 29015795 -56679959 + L1MC4a LINE L1 5689 5901 -1907 7070 194 33 39 chr15 29015964 29018501 -56677253 - L1M2c LINE L1 -4519 2270 2 1081 268 134 38 chr15 29018491 29019464 -56676290 - L1MC4 LINE L1 -873 7020 5844 * 351 306 0 0 chr15 29020965 29021050 -56674704 + L2 LINE L2 3186 3270 -2 209 189 0 0 chr15 29022288 29022325 -56673429 + L3 LINE CR1 1538 1574 -3 23 0 0 0 chr15 29024061 29024084 -56671670 + AT_rich Low_complexity Low_complexity 1 23 0 3575 166 112 59 chr15 29025278 29025777 -56669977 - L1MC4 LINE L1 -3 8039 7568 2335 104 0 7 chr15 29025777 29026085 -56669669 - AluSx SINE Alu -6 306 1 3575 166 112 59 chr15 29026085 29026587 -56669167 - L1MC4 LINE L1 -474 7568 6985 994 276 117 30 chr15 29028023 29028519 -56667235 - L2 LINE L2 -163 3150 2587 2407 153 19 0 chr15 29028519 29028937 -56666817 + L1MB5 LINE L1 5749 6174 0 994 276 117 30 chr15 29028937 29029074 -56666680 - L2 LINE L2 -726 2587 2463 1387 210 31 14 chr15 29030864 29031150 -56664604 + AluJo SINE Alu 1 291 -21 1144 178 5 0 chr15 29031164 29031349 -56664405 + MER5A DNA MER1_type 1 186 -3 247 254 153 0 chr15 29031659 29031777 -56663977 - L1ME4a LINE L1 -21 6100 5965 2824 220 99 59 chr15 29031900 29032314 -56663440 - L1MC5 LINE L1 -46 7915 7519 198 0 0 0 chr15 29032314 29032336 -56663418 + (TC)n Simple_repeat Simple_repeat 2 23 0 2824 220 99 59 chr15 29032336 29033138 -56662616 - L1MC5 LINE L1 -442 7519 6650 410 296 87 15 chr15 29033242 29033270 -56662484 - L1MC4 LINE L1 -457 5664 5639 2537 60 0 0 chr15 29033270 29033569 -56662185 + AluY SINE Alu 1 299 -12 410 296 87 15 chr15 29033569 29033736 -56662018 - L1MC4 LINE L1 -482 5639 5455 201 289 0 0 chr15 29034095 29034140 -56661614 + polypyrimidine Low_complexity Low_complexity 3 47 0 23 0 0 0 chr15 29034395 29034418 -56661336 + AT_rich Low_complexity Low_complexity 1 23 0 60 64 0 0 chr15 29034862 29034971 -56660783 + AT_rich Low_complexity Low_complexity 1 109 0 21 57 0 0 chr15 29035740 29035775 -56659979 + AT_rich Low_complexity Low_complexity 1 35 0 1839 172 7 3 chr15 29035885 29036182 -56659572 - AluJb SINE Alu -14 298 1 23 0 0 0 chr15 29036376 29036399 -56659355 + AT_rich Low_complexity Low_complexity 1 23 0 349 293 45 19 chr15 29036630 29036787 -56658967 + L1ME LINE L1 5524 5684 -437 185 0 40 0 chr15 29036865 29036890 -56658864 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1692 148 25 14 chr15 29036896 29037174 -56658580 - AluJb SINE Alu -30 282 2 2381 84 0 3 chr15 29038659 29038955 -56656799 + AluSp SINE Alu 1 295 -18 1638 156 47 14 chr15 29039456 29039731 -56656023 + AluJb SINE Alu 1 284 -28 1082 179 72 0 chr15 29040249 29040444 -56655310 + MER3 DNA MER1_type 1 209 0 22 35 0 0 chr15 29041237 29041266 -56654488 + AT_rich Low_complexity Low_complexity 1 29 0 225 0 0 0 chr15 29042376 29042401 -56653353 + (CTG)n Simple_repeat Simple_repeat 2 26 0 1984 139 0 0 chr15 29044113 29044400 -56651354 - AluJb SINE Alu -19 293 7 371 180 22 79 chr15 29044439 29044528 -56651226 - MIR SINE MIR -79 183 100 23 33 0 0 chr15 29044895 29044925 -56650829 + AT_rich Low_complexity Low_complexity 1 30 0 1408 204 37 20 chr15 29045605 29045899 -56649855 + AluJo SINE Alu 1 299 -13 2332 89 0 0 chr15 29046502 29046795 -56648959 + AluSg SINE Alu 2 294 -16 180 310 69 35 chr15 29047174 29047261 -56648493 - L3b LINE CR1 -38 1545 1456 5669 119 67 5 chr15 29048055 29049187 -56646567 - L1PB2 LINE L1 -3 6148 4954 715 201 0 8 chr15 29050016 29050150 -56645604 - FLAM_C SINE Alu 0 133 1 449 154 0 39 chr15 29051542 29051620 -56644134 - Tigger5 DNA MER2_type 0 2323 2249 358 203 40 0 chr15 29051618 29051692 -56644062 + Tigger5 DNA MER2_type 2242 2318 -5 * 492 156 26 0 chr15 29051693 29051770 -56643984 - Tigger5 DNA MER2_type -2244 79 1 299 278 44 0 chr15 29053596 29053686 -56642068 - L2 LINE L2 0 3272 3179 2514 243 89 29 chr15 29053941 29054287 -56641467 + L1MEc LINE L1 32 356 -6040 2564 110 6 3 chr15 29054287 29054650 -56641104 - THE1B LTR MaLR 0 364 1 2514 243 89 29 chr15 29054650 29054779 -56640975 + L1MEc LINE L1 356 476 -5920 1546 158 73 43 chr15 29054779 29054976 -56640778 + MER44D DNA MER2_type 1 191 -2300 2210 115 0 0 chr15 29054976 29055263 -56640491 - AluSx SINE Alu -25 287 1 1546 158 73 43 chr15 29055263 29055394 -56640360 + MER44D DNA MER2_type 191 609 0 2514 243 89 29 chr15 29055394 29055752 -56640002 + L1MEc LINE L1 476 916 -5480 2490 247 119 22 chr15 29055753 29056644 -56639110 + L1MEc LINE L1 940 1938 -4458 1467 123 5 5 chr15 29056644 29056848 -56638906 + AluSq SINE Alu 1 204 -109 2490 247 119 22 chr15 29056848 29056947 -56638807 + L1MEc LINE L1 1938 2026 -4370 4439 219 70 107 chr15 29056979 29059078 -56636676 + L1M3e LINE L1 460 2482 -5007 1182 208 59 0 chr15 29059080 29059335 -56636419 + L1MA7 LINE L1 5621 5890 -401 19543 154 32 8 chr15 29059339 29063468 -56632286 + L1MA1 LINE L1 270 4297 -3424 2198 133 0 0 chr15 29063468 29063770 -56631984 - AluSx SINE Alu -10 302 1 19543 154 32 8 chr15 29063770 29063972 -56631782 + L1MA1 LINE L1 4297 4493 -3228 2169 98 6 46 chr15 29063972 29064261 -56631493 + AluSq SINE Alu 1 277 -36 216 0 0 0 chr15 29064261 29064285 -56631469 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2169 98 6 46 chr15 29064285 29064321 -56631433 + AluSq SINE Alu 277 313 0 19543 154 32 8 chr15 29064321 29065015 -56630739 + L1MA1 LINE L1 4493 5169 -2552 201 39 0 0 chr15 29065015 29065041 -56630713 + (CA)n Simple_repeat Simple_repeat 1 26 0 19543 154 32 8 chr15 29065041 29067272 -56628482 + L1MA1 LINE L1 5169 7715 -6 3433 209 90 37 chr15 29067280 29068582 -56627172 + L1M3e LINE L1 3065 4429 -3136 * 8541 134 76 23 chr15 29068580 29068839 -56626915 - L1 LINE L1 -3433 4132 3888 2204 117 0 0 chr15 29068839 29069130 -56626624 - AluSx SINE Alu -21 291 1 8541 134 76 23 chr15 29069130 29069176 -56626578 - L1 LINE L1 -3677 3888 3846 1509 164 160 11 chr15 29069176 29069439 -56626315 - AluJb SINE Alu 0 302 1 8541 134 76 23 chr15 29069439 29070833 -56624921 - L1 LINE L1 -3719 3846 2309 1837 170 13 0 chr15 29070833 29071133 -56624621 + AluSx SINE Alu 1 304 -8 8541 134 76 23 chr15 29071133 29071419 -56624335 - L1 LINE L1 -5256 2309 2040 2508 142 6 3 chr15 29071419 29071778 -56623976 + THE1B LTR MaLR 1 360 -4 1529 129 19 101 chr15 29071800 29072172 -56623582 - MER4A LTR ERV1 -2 662 263 569 153 10 10 chr15 29072172 29072270 -56623484 - MER4A LTR ERV1 -566 98 1 379 129 0 141 chr15 29072273 29072306 -56623448 + THE1B-int LTR MaLR 16 31 -1549 2411 78 0 13 chr15 29072306 29072614 -56623140 + AluY SINE Alu 1 304 -7 379 129 0 141 chr15 29072614 29072665 -56623089 + THE1B-int LTR MaLR 31 88 -1492 1983 113 158 75 chr15 29072671 29073044 -56622710 + MER4A LTR ERV1 261 664 0 2658 73 71 73 chr15 29073047 29073484 -56622270 + MER4A-int LTR ERV1 1 436 -6162 1295 107 42 32 chr15 29073483 29073699 -56622055 + MER4A-int LTR ERV1 895 1112 -5486 * 387 0 0 0 chr15 29073700 29073743 -56622011 + (TG)n Simple_repeat Simple_repeat 2 44 0 11461 124 91 67 chr15 29073743 29074266 -56621488 + MER4A-int LTR ERV1 696 1205 -5322 2387 77 3 10 chr15 29074266 29074579 -56621175 + AluY SINE Alu 1 311 0 11461 124 91 67 chr15 29074579 29078049 -56617705 + MER4A-int LTR ERV1 1205 5912 -615 44064 29 21 1 chr15 29078049 29084079 -56611675 + L1HS LINE L1 2 6152 -3 270 21 64 0 chr15 29084083 29084130 -56611624 + (CAA)n Simple_repeat Simple_repeat 2 51 0 4118 106 70 21 chr15 29084158 29084828 -56610926 + MER4A-int LTR ERV1 5896 6598 0 511 135 31 10 chr15 29084830 29084926 -56610828 + MER4A LTR ERV1 1 98 -566 1652 146 5 75 chr15 29084926 29085295 -56610459 + MER4A LTR ERV1 263 664 0 3021 75 40 0 chr15 29085295 29085695 -56610059 + THE1B-int LTR MaLR 1165 1580 0 2675 95 11 48 chr15 29085695 29086073 -56609681 + THE1B LTR MaLR 1 364 0 12128 152 38 7 chr15 29086073 29088048 -56607706 - L1M1 LINE L1 -5521 2044 10 592 182 76 72 chr15 29088076 29088312 -56607442 + L1MEc LINE L1 2039 2275 -4121 641 292 99 5 chr15 29088355 29088557 -56607197 - MER58A DNA MER1_type -3 221 1 701 227 34 34 chr15 29088557 29088764 -56606990 + L1MEc LINE L1 2268 2474 -3922 814 273 84 4 chr15 29089022 29089249 -56606505 + MIR SINE MIR 3 247 -15 1397 179 48 96 chr15 29089437 29089790 -56605964 + MER58B DNA MER1_type 1 336 -5 1763 270 33 36 chr15 29089873 29090448 -56605306 - HERV16 LTR ERVL -4417 579 7 725 153 90 23 chr15 29090450 29090627 -56605127 + MER53 DNA DNA 1 189 0 1442 251 78 0 chr15 29090632 29091019 -56604735 - LTR16A LTR ERVL -5 445 29 242 305 79 43 chr15 29091486 29091650 -56604104 + MIR3 SINE MIR 38 207 -1 1431 150 4 11 chr15 29092193 29092460 -56603294 + L1PA5 LINE L1 5716 5980 -174 3920 50 15 0 chr15 29093439 29093900 -56601854 + L1PA5 LINE L1 5687 6154 0 249 247 52 72 chr15 29093999 29094096 -56601658 - MIR SINE MIR -86 176 82 183 80 0 0 chr15 29095265 29095290 -56600464 + (A)n Simple_repeat Simple_repeat 1 25 0 602 222 77 0 chr15 29095795 29095912 -56599842 - FLAM_A SINE Alu -6 127 2 937 233 5 20 chr15 29096448 29096650 -56599104 - MER58A DNA MER1_type 0 224 26 769 131 54 31 chr15 29096894 29097024 -56598730 + FLAM_C SINE Alu 1 133 0 189 0 0 0 chr15 29097040 29097061 -56598693 + (A)n Simple_repeat Simple_repeat 1 21 0 262 289 141 15 chr15 29097410 29097545 -56598209 - MIR3 SINE MIR -45 163 12 419 265 43 8 chr15 29098220 29098337 -56597417 - MER5A DNA MER1_type -60 129 9 353 291 135 14 chr15 29098516 29098664 -56597090 - MIR3 SINE MIR -11 197 32 413 275 84 24 chr15 29099866 29100033 -56595721 - MIR3 SINE MIR -11 197 21 203 207 256 0 chr15 29100540 29100622 -56595132 - L2 LINE L2 0 3272 3170 252 242 0 32 chr15 29103144 29103206 -56592548 + MIR3 SINE MIR 124 183 -25 663 272 77 5 chr15 29104219 29104414 -56591340 + MIR SINE MIR 19 227 -35 539 218 17 17 chr15 29104971 29105150 -56590604 + GA-rich Low_complexity Low_complexity 2 180 0 235 173 96 19 chr15 29105641 29105693 -56590061 + L2 LINE L2 3258 3313 0 1541 194 59 19 chr15 29106069 29106319 -56589435 + LTR32 LTR ERVL 15 282 -189 2634 129 58 31 chr15 29106319 29106736 -56589018 + MSTA LTR MaLR 1 428 0 1541 194 59 19 chr15 29106736 29106809 -56588945 + LTR32 LTR ERVL 282 351 -120 839 162 13 7 chr15 29106865 29107019 -56588735 + LTR32 LTR ERVL 317 471 0 2164 103 0 0 chr15 29107797 29108108 -56587646 - AluSx SINE Alu 0 311 1 255 233 23 75 chr15 29108276 29108409 -56587345 - MIR SINE MIR -57 205 80 1148 307 56 18 chr15 29108671 29109173 -56586581 + L1MEc LINE L1 200 720 -5676 2060 201 37 9 chr15 29109194 29109626 -56586128 + L1M4 LINE L1 3828 4271 -1875 3311 104 123 8 chr15 29109776 29110248 -56585506 - MER1A DNA MER1_type 0 527 2 187 349 0 35 chr15 29112029 29112115 -56583639 + L2 LINE L2 2238 2320 -994 1145 206 62 8 chr15 29112165 29112408 -56583346 - MIR SINE MIR 0 262 7 260 65 43 0 chr15 29113086 29113132 -56582622 + (TTCA)n Simple_repeat Simple_repeat 4 51 0 201 231 144 48 chr15 29113132 29113236 -56582518 - L2 LINE L2 -14 3299 3186 323 316 29 43 chr15 29113239 29113378 -56582376 - MIR3 SINE MIR -21 187 51 366 258 11 11 chr15 29113710 29113799 -56581955 + MIR SINE MIR 14 102 -160 365 222 111 40 chr15 29113800 29113926 -56581828 - L2 LINE L2 0 3272 3138 210 321 110 0 chr15 29114274 29114383 -56581371 - L2 LINE L2 -247 3066 2946 225 226 38 0 chr15 29114435 29114488 -56581266 - L2 LINE L2 -371 2942 2888 * 312 274 60 34 chr15 29114486 29114603 -56581151 + MIR SINE MIR 122 241 -21 223 296 22 82 chr15 29114680 29114815 -56580939 + L2 LINE L2 2911 3037 -235 189 236 283 19 chr15 29115112 29115218 -56580536 + L2 LINE L2 3177 3310 -3 550 319 119 45 chr15 29115221 29115935 -56579819 + L2 LINE L2 2029 2795 -519 1095 272 105 29 chr15 29116411 29117022 -56578732 + L2 LINE L2 2640 3295 -18 21 0 0 0 chr15 29118687 29118708 -56577046 + AT_rich Low_complexity Low_complexity 1 21 0 1971 70 0 33 chr15 29119684 29119955 -56575799 - AluY SINE Alu -1 310 49 400 276 35 41 chr15 29121376 29121521 -56574233 - MER5A DNA MER1_type -27 162 19 805 240 103 10 chr15 29122101 29122305 -56573449 + MER45C DNA AcHobo 1 223 -730 1072 170 174 30 chr15 29122424 29122659 -56573095 + MER45C DNA AcHobo 677 945 -8 6487 123 62 50 chr15 29125127 29126343 -56569411 + Tigger3b DNA MER2_type 1 1231 0 217 366 0 0 chr15 29126584 29126655 -56569099 + MIR SINE MIR 71 141 -121 1584 195 33 3 chr15 29127410 29127712 -56568042 + AluJb SINE Alu 1 311 -1 512 300 9 23 chr15 29127826 29127991 -56567763 - MIR SINE MIR -65 143 10 198 200 50 0 chr15 29128605 29128645 -56567109 - MIR3 SINE MIR -15 193 152 197 223 27 107 chr15 29128702 29128814 -56566940 + L2 LINE L2 2839 2941 -372 427 181 14 0 chr15 29128937 29129008 -56566746 + Tigger2 DNA MER2_type 1 72 -2646 248 246 105 0 chr15 29129008 29129065 -56566689 - MER2 DNA MER2_type -1 344 282 * 996 214 0 6 chr15 29129042 29129220 -56566534 - MER8 DNA MER2_type -62 177 1 1151 192 57 7 chr15 29129318 29129649 -56566105 + MSTD LTR MaLR 1 393 -3 2458 138 53 15 chr15 29130109 29130454 -56565300 + MSTC LTR MaLR 1 366 -62 1999 126 0 7 chr15 29130454 29130748 -56565006 + AluSx SINE Alu 1 292 -20 2458 138 53 15 chr15 29130748 29130814 -56564940 + MSTC LTR MaLR 366 428 0 2045 136 0 10 chr15 29131418 29131728 -56564026 - AluSx SINE Alu -4 308 2 225 200 18 73 chr15 29132084 29132139 -56563615 + MIR3 SINE MIR 117 168 -40 239 282 39 39 chr15 29132208 29132286 -56563468 - MIR SINE MIR -74 134 57 1696 186 0 0 chr15 29132302 29132597 -56563157 - AluJb SINE Alu -9 303 9 1670 170 70 28 chr15 29133446 29133846 -56561908 + MER95 LTR ERV 5 421 -10 212 250 11 114 chr15 29134185 29134273 -56561481 + L2 LINE L2 3220 3298 -15 189 305 102 55 chr15 29135321 29135449 -56560305 + MIR SINE MIR 73 206 -56 1266 158 134 4 chr15 29135548 29135802 -56559952 - AluJb SINE Alu -19 293 7 317 333 15 56 chr15 29136551 29136746 -56559008 + L1M4 LINE L1 5019 5205 -941 632 276 76 60 chr15 29136761 29136891 -56558863 + MIR SINE MIR 9 135 -127 207 100 0 0 chr15 29136891 29136921 -56558833 + (TAA)n Simple_repeat Simple_repeat 2 31 0 632 276 76 60 chr15 29136921 29137040 -56558714 + MIR SINE MIR 135 262 0 334 306 46 53 chr15 29137042 29137247 -56558507 + L1M4 LINE L1 5219 5420 -701 1035 211 23 20 chr15 29137589 29137892 -56557862 + L1MEc LINE L1 768 1071 -5325 939 178 0 0 chr15 29137895 29138052 -56557702 + FRAM SINE Alu 1 157 -19 1167 262 88 25 chr15 29138070 29138624 -56557130 + L1MEc LINE L1 1072 1660 -4736 277 317 140 49 chr15 29138692 29138935 -56556819 + L2 LINE L2 3000 3264 -8 1752 214 72 123 chr15 29139235 29139925 -56555829 + L2 LINE L2 2227 2842 -471 2123 122 0 0 chr15 29139925 29140236 -56555518 - AluSx SINE Alu -1 311 1 1752 214 72 123 chr15 29140236 29140485 -56555269 + L2 LINE L2 2842 3102 -211 1036 156 0 11 chr15 29140487 29140666 -56555088 - AluSg/x SINE Alu -9 301 125 784 239 5 25 chr15 29140666 29140863 -56554891 + L2 LINE L2 3121 3313 0 11640 219 20 29 chr15 29141630 29142436 -56553318 - HERV17 LTR ERV1 -4889 3737 2925 2334 78 0 10 chr15 29142436 29142744 -56553010 - AluY SINE Alu -6 305 1 11640 219 20 29 chr15 29142744 29145073 -56550681 - HERV17 LTR ERV1 -5701 2925 1 670 181 0 112 chr15 29145118 29145306 -56550448 - LTR12 LTR ERV1 -262 452 286 716 313 41 16 chr15 29145594 29145840 -56549914 - MIR SINE MIR 0 262 11 657 98 0 107 chr15 29146116 29146215 -56549539 + MER41B LTR ERV1 1 86 -549 2103 104 0 3 chr15 29146215 29146513 -56549241 - AluSc SINE Alu -12 297 1 657 98 0 107 chr15 29146513 29146535 -56549219 + MER41B LTR ERV1 86 109 -526 2260 105 0 3 chr15 29147122 29147435 -56548319 + AluSx SINE Alu 1 312 0 3020 128 21 6 chr15 29147436 29147903 -56547851 + MER41B LTR ERV1 162 635 0 360 375 63 30 chr15 29147908 29148383 -56547371 + L2 LINE L2 2487 2977 -337 189 0 0 0 chr15 29149131 29149152 -56546602 + (TGG)n Simple_repeat Simple_repeat 3 23 0 180 0 0 0 chr15 29149212 29149232 -56546522 + (T)n Simple_repeat Simple_repeat 1 20 0 2992 199 19 72 chr15 29149514 29150241 -56545513 - LTR8 LTR ERV1 -2 689 1 1820 151 12 112 chr15 29150515 29150918 -56544836 + MLT1A1 LTR MaLR 1 363 -2 788 270 75 8 chr15 29150941 29151182 -56544572 - MIR SINE MIR -3 259 3 793 138 0 0 chr15 29151640 29151756 -56543998 + FLAM_C SINE Alu 5 120 -13 2178 90 0 13 chr15 29152904 29153204 -56542550 + AluY SINE Alu 1 296 -15 1710 201 15 18 chr15 29153243 29153581 -56542173 - MER58B DNA MER1_type -2 339 3 503 328 43 8 chr15 29153688 29153944 -56541810 - MARNA DNA Mariner -9 577 313 336 179 13 26 chr15 29154228 29154306 -56541448 + Charlie8 DNA MER1_type 82 158 -2259 1493 182 26 29 chr15 29154313 29154626 -56541128 + AluJo SINE Alu 1 312 0 201 94 0 0 chr15 29154630 29154662 -56541092 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 255 214 43 29 chr15 29154849 29154919 -56540835 - L1MC4a LINE L1 -1654 6154 6084 * 1505 232 107 17 chr15 29154909 29155413 -56540341 - L1MC4a LINE L1 -287 6004 5451 1503 77 10 0 chr15 29155414 29155608 -56540146 + MER30 DNA MER1_type 2 197 -33 253 217 103 98 chr15 29155623 29155826 -56539928 - L1MC4a LINE L1 -2350 5458 5255 2107 117 3 0 chr15 29155856 29156163 -56539591 - AluSx SINE Alu -4 308 1 330 283 115 68 chr15 29156166 29157453 -56538301 - L1MC4a LINE L1 -909 5237 3890 532 244 50 0 chr15 29158682 29158801 -56536953 + MER5B DNA MER1_type 37 161 -17 528 259 168 0 chr15 29158807 29158950 -56536804 + MER5A DNA MER1_type 9 175 -14 256 311 41 87 chr15 29158971 29159167 -56536587 + MER5A DNA MER1_type 2 188 -1 279 235 109 34 chr15 29160650 29160769 -56534985 - MIR3 SINE MIR -6 202 75 288 290 86 0 chr15 29161998 29162091 -56533663 + MIR3 SINE MIR 2 102 -106 2511 138 41 5 chr15 29162694 29163107 -56532647 + MSTA LTR MaLR 1 428 0 188 338 27 0 chr15 29163279 29163353 -56532401 + L3 LINE CR1 1097 1172 -405 180 320 120 24 chr15 29163467 29163592 -56532162 + L3 LINE CR1 1257 1393 -184 * 359 260 20 30 chr15 29163578 29163678 -56532076 - L2 LINE L2 -1 3271 3173 240 111 0 0 chr15 29163866 29163902 -56531852 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2595 183 64 21 chr15 29163956 29164471 -56531283 + MER21A LTR ERV1 1 537 -394 1495 98 15 0 chr15 29164470 29164674 -56531080 + MER21A LTR ERV1 725 931 0 * 354 297 297 0 chr15 29165387 29165579 -56530175 + MIR SINE MIR 14 262 0 22 0 0 0 chr15 29166015 29166037 -56529717 + AT_rich Low_complexity Low_complexity 1 22 0 786 276 75 58 chr15 29166606 29167172 -56528582 - L2 LINE L2 0 3313 2736 993 221 106 39 chr15 29167812 29168124 -56527630 - LTR16A LTR ERVL 0 450 118 416 226 65 71 chr15 29168500 29168655 -56527099 - MIR SINE MIR -25 237 84 420 333 41 11 chr15 29170022 29170289 -56525465 + HAL1 LINE L1 1401 1675 -832 401 225 45 157 chr15 29170781 29171048 -56524706 + L1MCa LINE L1 1839 2075 -4351 888 320 69 17 chr15 29171941 29172422 -56523332 + L2 LINE L2 1790 2295 -1019 429 316 89 61 chr15 29172769 29173209 -56522545 + L2 LINE L2 2820 3271 -1 1617 206 104 43 chr15 29173799 29174289 -56521465 - MLT2B1 LTR ERVL 0 520 1 387 60 0 0 chr15 29174349 29174399 -56521355 + (CA)n Simple_repeat Simple_repeat 2 51 0 2230 229 52 62 chr15 29174417 29175164 -56520590 + MER20B DNA MER1_type 5 744 -39 240 204 0 0 chr15 29175207 29175251 -56520503 + MER20B DNA MER1_type 739 782 -1 594 152 105 0 chr15 29175355 29175460 -56520294 + AluSc SINE Alu 189 304 -5 189 178 0 0 chr15 29175465 29175510 -56520244 + (TGAA)n Simple_repeat Simple_repeat 3 47 0 287 322 35 43 chr15 29175920 29176035 -56519719 + MIR3 SINE MIR 8 121 -87 327 291 12 0 chr15 29176103 29176189 -56519565 + MER69A DNA AcHobo 6 92 -85 2063 148 37 20 chr15 29176811 29177082 -56518672 + MER47A DNA MER2_type 9 289 -2034 2392 81 0 0 chr15 29177082 29177389 -56518365 - AluSc SINE Alu -2 307 1 2063 148 37 20 chr15 29177389 29177469 -56518285 + MER47A DNA MER2_type 289 366 0 501 162 71 20 chr15 29177758 29177857 -56517897 - FLAM_A SINE Alu -21 121 18 239 329 0 0 chr15 29179370 29179440 -56516314 - MIR SINE MIR -119 143 74 185 260 40 0 chr15 29180162 29180212 -56515542 - MIR SINE MIR -85 123 72 22 35 0 0 chr15 29180968 29180997 -56514757 + AT_rich Low_complexity Low_complexity 1 29 0 1423 177 72 10 chr15 29181921 29182226 -56513528 + MER33 DNA MER1_type 1 324 0 260 283 163 0 chr15 29182871 29182963 -56512791 + MIR SINE MIR 122 228 -34 421 331 74 0 chr15 29182995 29183143 -56512611 - MIR SINE MIR -56 206 48 325 345 72 36 chr15 29184605 29184799 -56510955 + MIR SINE MIR 31 231 -31 415 244 112 16 chr15 29185054 29185202 -56510552 + MIR3 SINE MIR 19 172 -43 1296 253 62 50 chr15 29185465 29185539 -56510215 - MLT1J LTR MaLR -4 507 435 2191 85 7 26 chr15 29185539 29185845 -56509909 + AluY SINE Alu 2 301 -10 1296 253 62 50 chr15 29185845 29186174 -56509580 - MLT1J LTR MaLR -76 435 99 826 144 0 8 chr15 29186218 29186350 -56509404 - FLAM_C SINE Alu -2 131 1 891 138 7 0 chr15 29186601 29186739 -56509015 - FLAM_C SINE Alu -4 139 1 482 289 53 59 chr15 29186751 29186938 -56508816 - MIR3 SINE MIR -3 205 20 386 202 0 175 chr15 29187309 29187492 -56508262 - L2 LINE L2 0 3313 3163 447 323 131 17 chr15 29187682 29188094 -56507660 - L2 LINE L2 -387 2927 2469 230 300 43 0 chr15 29188799 29188869 -56506885 + MIR SINE MIR 41 113 -149 * 360 302 133 7 chr15 29188842 29188985 -56506769 - MIR SINE MIR -35 173 13 2236 101 0 0 chr15 29189135 29189432 -56506322 - AluSx SINE Alu -15 297 1 429 260 68 45 chr15 29191031 29191208 -56504546 - MIR3 SINE MIR -3 205 25 673 229 41 88 chr15 29191406 29191761 -56503993 - L1MDb LINE L1 -5374 1156 794 327 305 63 63 chr15 29192093 29192424 -56503330 - L1MDb LINE L1 -6191 349 19 281 350 137 0 chr15 29192605 29192722 -56503032 - L2 LINE L2 -6 3266 3134 1570 203 60 14 chr15 29193247 29193596 -56502158 - MLT1A1 LTR MaLR 0 365 1 335 265 129 26 chr15 29193805 29193969 -56501785 - MIR3 SINE MIR -73 135 1 181 214 125 0 chr15 29194640 29194696 -56501058 - MIR SINE MIR -14 248 186 207 306 0 0 chr15 29194697 29194746 -56501008 + MIR SINE MIR 212 260 -2 181 143 0 0 chr15 29195515 29195543 -56500211 + L2 LINE L2 2735 2762 -552 355 135 233 135 chr15 29196724 29196788 -56498966 - MLT1E2 LTR MaLR 0 626 570 2113 119 0 0 chr15 29196788 29197082 -56498672 + AluSx SINE Alu 7 300 -12 355 135 233 135 chr15 29197082 29197150 -56498604 - MLT1E2 LTR MaLR -56 570 481 2389 84 0 0 chr15 29197443 29197752 -56498002 + AluSq SINE Alu 1 309 -4 22 0 0 0 chr15 29197846 29197868 -56497886 + AT_rich Low_complexity Low_complexity 1 22 0 250 241 89 0 chr15 29198049 29198128 -56497626 - L1ME4a LINE L1 -40 6081 5996 403 340 85 10 chr15 29199739 29199939 -56495815 - L2 LINE L2 -64 3208 2994 402 268 38 81 chr15 29202673 29202882 -56492872 + L2 LINE L2 2963 3162 -110 302 246 117 95 chr15 29204027 29204206 -56491548 - MIR3 SINE MIR -9 199 17 468 0 0 0 chr15 29204772 29204824 -56490930 + (TG)n Simple_repeat Simple_repeat 2 53 0 275 278 225 7 chr15 29205355 29205506 -56490248 + MIR3 SINE MIR 19 202 -6 335 280 45 53 chr15 29207054 29207186 -56488568 - L2 LINE L2 -8 3264 3134 28 0 0 0 chr15 29207477 29207505 -56488249 + AT_rich Low_complexity Low_complexity 1 28 0 5501 80 20 33 chr15 29207643 29209107 -56486647 - SVA Other Other -518 1046 7 1345 84 6 0 chr15 29209377 29209555 -56486199 - L1PB1 LINE L1 -6 6145 5967 274 272 228 0 chr15 29209881 29209995 -56485759 - MER91A DNA MER1_type 0 196 57 188 280 19 75 chr15 29210497 29210604 -56485150 + L2 LINE L2 1726 1826 -1488 192 40 0 0 chr15 29210604 29210629 -56485125 + (ACTG)n Simple_repeat Simple_repeat 3 27 0 222 220 85 0 chr15 29211064 29211123 -56484631 + MIR SINE MIR 29 92 -170 348 137 0 0 chr15 29212426 29212477 -56483277 - MIR SINE MIR -2 260 210 229 346 94 24 chr15 29214466 29214593 -56481161 - L2 LINE L2 -1 3271 3136 2408 82 25 238 chr15 29216717 29217154 -56478600 - LTR14B LTR ERVK 0 608 1 751 42 0 93 chr15 29217161 29217279 -56478475 - HERVK14 LTR ERVK -4 5941 5835 376 157 0 20 chr15 29217279 29217349 -56478405 - MER41C LTR ERV1 -493 61 6 1342 48 116 21 chr15 29217349 29217538 -56478216 - HERVK14 LTR ERVK -181 5764 5558 * 3453 80 20 3 chr15 29217526 29218038 -56477716 - HERVK14 LTR ERVK -1814 5429 4847 * 9025 77 11 0 chr15 29218022 29219155 -56476599 - HERVK14 LTR ERVK -3417 2528 1384 6209 65 10 0 chr15 29219180 29219953 -56475801 - HERVK14 LTR ERVK -5164 781 1 2571 74 9 236 chr15 29219953 29220398 -56475356 - LTR14B LTR ERVK 0 608 1 2144 57 92 11 chr15 29222244 29222527 -56473227 + AluY SINE Alu 1 306 -5 198 0 0 0 chr15 29224665 29224687 -56471067 + (A)n Simple_repeat Simple_repeat 1 22 0 310 123 46 0 chr15 29225559 29225624 -56470130 + CT-rich Low_complexity Low_complexity 2 69 0 351 278 96 9 chr15 29227056 29227171 -56468583 - MIR SINE MIR -114 148 24 216 0 0 0 chr15 29228614 29228638 -56467116 + (TG)n Simple_repeat Simple_repeat 1 24 0 2047 125 4 4 chr15 29228638 29228918 -56466836 - AluSq SINE Alu -33 280 1 323 244 168 15 chr15 29228960 29229091 -56466663 - MIR3 SINE MIR -38 170 20 208 226 16 48 chr15 29229137 29229199 -56466555 - MIR SINE MIR -109 153 94 2072 113 32 3 chr15 29229393 29229675 -56466079 + AluSg SINE Alu 1 290 -20 280 209 86 19 chr15 29230051 29230156 -56465598 - MIR SINE MIR -29 233 122 274 365 39 0 chr15 29230216 29230320 -56465434 - L2 LINE L2 -20 3252 3145 248 319 97 7 chr15 29231874 29232018 -56463736 + MIR SINE MIR 20 176 -86 992 229 96 42 chr15 29232304 29232657 -56463097 + L1ME1 LINE L1 4258 4629 -1517 1307 283 60 8 chr15 29232662 29233062 -56462692 - LTR16B LTR ERVL 0 464 44 2477 208 104 45 chr15 29233134 29234542 -56461212 + L1ME1 LINE L1 4681 6330 -4 820 202 122 53 chr15 29234822 29235084 -56460670 + MER45C DNA AcHobo 1 280 -673 707 223 147 5 chr15 29235153 29235350 -56460404 + MER45C DNA AcHobo 725 949 -4 332 247 54 21 chr15 29236262 29236355 -56459399 + MIR SINE MIR 30 125 -83 450 301 57 46 chr15 29236748 29237030 -56458724 - MER102a DNA MER1_type -10 320 36 555 259 161 5 chr15 29240046 29240239 -56455515 + MIR SINE MIR 40 262 0 309 198 123 9 chr15 29240879 29240985 -56454769 + MIR SINE MIR 90 207 -55 549 194 28 0 chr15 29241112 29241220 -56454534 + MER94 DNA DNA 4 114 -20 375 346 34 19 chr15 29241374 29241579 -56454175 - MIR SINE MIR 0 262 55 285 223 18 62 chr15 29242996 29243108 -56452646 + L2 LINE L2 2917 3023 -249 309 255 60 65 chr15 29243390 29243664 -56452090 + L1MEd LINE L1 984 1265 -1242 352 264 88 31 chr15 29243744 29243903 -56451851 - MARNA DNA Mariner -209 377 210 343 290 48 14 chr15 29244893 29245038 -56450716 - MIR SINE MIR -1 261 112 287 256 115 0 chr15 29246204 29246282 -56449472 - MIR3 SINE MIR -22 186 100 285 281 35 35 chr15 29246574 29246688 -56449066 - L2 LINE L2 -1 3271 3158 2225 104 0 29 chr15 29248924 29249231 -56446523 + AluSx SINE Alu 1 298 -14 288 235 113 35 chr15 29249445 29249560 -56446194 - L2 LINE L2 -12 3260 3137 966 256 17 0 chr15 29251622 29251856 -56443898 + MIR SINE MIR 15 252 -10 2025 12 16 0 chr15 29251866 29252110 -56443644 - L1P LINE L1 -824 5322 5075 962 34 8 0 chr15 29252110 29252224 -56443530 + L1PA2 LINE L1 6037 6155 0 2852 143 32 23 chr15 29252354 29252879 -56442875 - Tigger6 DNA MER2_type 0 1597 1068 21 0 0 0 chr15 29253078 29253099 -56442655 + AT_rich Low_complexity Low_complexity 1 21 0 280 285 60 53 chr15 29255192 29255343 -56440411 - MER5A DNA MER1_type -4 185 34 220 185 0 141 chr15 29255541 29255633 -56440121 - MER5B DNA MER1_type -97 81 3 319 203 0 0 chr15 29255640 29255704 -56440050 - MIR3 SINE MIR -52 156 93 193 306 42 28 chr15 29255727 29255799 -56439955 - MIR3 SINE MIR -41 167 95 894 279 20 24 chr15 29257005 29257299 -56438455 - L1ME3A LINE L1 -214 5956 5664 1200 104 0 0 chr15 29257952 29258106 -56437648 + AluSg/x SINE Alu 137 290 -22 223 227 0 0 chr15 29258165 29258209 -56437545 - L2 LINE L2 -4 3309 3266 207 0 0 0 chr15 29259429 29259452 -56436302 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 326 213 0 0 chr15 29260173 29260234 -56435520 + AluJ/monomer SINE Alu 239 299 -3 1061 162 22 0 chr15 29261162 29261347 -56434407 + MER5A DNA MER1_type 1 189 0 610 217 22 0 chr15 29261714 29261852 -56433902 + MER5B DNA MER1_type 3 143 -35 3583 233 186 43 chr15 29263092 29263257 -56432497 - L2 LINE L2 -5 3308 3168 681 170 9 0 chr15 29263257 29263369 -56432385 + MER81 DNA DNA 1 113 -1 3583 233 186 43 chr15 29263369 29265156 -56430598 - L2 LINE L2 -145 3168 1032 508 272 66 3 chr15 29265245 29265569 -56430185 - L1MC4 LINE L1 -467 7575 7281 330 141 113 0 chr15 29265571 29265642 -56430112 - L2 LINE L2 -2285 1029 951 2224 121 0 10 chr15 29265683 29265990 -56429764 + AluSx SINE Alu 1 304 -8 207 0 0 0 chr15 29267022 29267045 -56428709 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1101 152 0 0 chr15 29267199 29267357 -56428397 - AluJb SINE Alu -14 298 141 25 31 0 0 chr15 29267357 29267389 -56428365 + AT_rich Low_complexity Low_complexity 1 32 0 1553 173 0 22 chr15 29268902 29269210 -56426544 - AluJb SINE Alu 0 312 11 337 247 186 10 chr15 29269257 29269425 -56426329 - MIR SINE MIR -3 259 51 289 297 65 14 chr15 29269642 29269780 -56425974 - MIR3 SINE MIR -5 203 59 1944 179 44 71 chr15 29270140 29270488 -56425266 - MLT1D LTR MaLR 0 505 174 2429 81 0 0 chr15 29270488 29270784 -56424970 - AluY SINE Alu -2 309 14 1944 179 44 71 chr15 29270784 29270953 -56424801 - MLT1D LTR MaLR -331 174 2 582 237 28 28 chr15 29271034 29271211 -56424543 + MIR SINE MIR 40 216 -46 217 316 132 0 chr15 29271383 29271459 -56424295 - L2 LINE L2 -54 3218 3133 387 339 57 13 chr15 29271768 29271998 -56423756 - L2 LINE L2 -469 2845 2606 387 0 0 0 chr15 29272968 29273011 -56422743 + (TG)n Simple_repeat Simple_repeat 1 43 0 315 49 0 0 chr15 29273010 29273051 -56422703 + (GA)n Simple_repeat Simple_repeat 1 41 0 * 243 0 0 0 chr15 29273319 29273346 -56422408 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 197 309 55 0 chr15 29273416 29273471 -56422283 - L2 LINE L2 -93 3179 3122 21 71 0 0 chr15 29273812 29273854 -56421900 + AT_rich Low_complexity Low_complexity 1 42 0 245 106 0 43 chr15 29274616 29274663 -56421091 + (CATA)n Simple_repeat Simple_repeat 2 46 0 1555 188 15 3 chr15 29275716 29276046 -56419708 + L1MA4 LINE L1 5962 6295 -5 1061 259 26 47 chr15 29276144 29276527 -56419227 - L2 LINE L2 0 3313 2939 246 335 67 30 chr15 29277077 29277241 -56418513 + MIR SINE MIR 66 235 -27 234 309 31 0 chr15 29278673 29278770 -56416984 + MIR SINE MIR 157 256 -6 185 265 235 15 chr15 29279586 29279718 -56416036 - MIR3 SINE MIR -46 162 2 2258 112 0 13 chr15 29279907 29280212 -56415542 + AluSx SINE Alu 1 301 -11 347 263 17 34 chr15 29282532 29282650 -56413104 - L2 LINE L2 -20 3252 3137 518 286 101 29 chr15 29283470 29283769 -56411985 - Charlie8 DNA MER1_type -990 1427 9 260 122 0 0 chr15 29284873 29284914 -56410840 - L2 LINE L2 -10 3303 3263 191 279 0 0 chr15 29288871 29288914 -56406840 + MIR3 SINE MIR 155 197 -11 504 282 46 11 chr15 29288930 29289104 -56406650 + MIR SINE MIR 64 243 -19 214 284 62 57 chr15 29289212 29289388 -56406366 - MIR SINE MIR -64 198 22 189 167 62 0 chr15 29290217 29290265 -56405489 - MIR SINE MIR -71 191 141 719 195 0 0 chr15 29290394 29290512 -56405242 + FRAM SINE Alu 32 149 -27 297 68 0 0 chr15 29290512 29290556 -56405198 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 336 223 36 62 chr15 29290799 29290911 -56404843 - MER102b DNA MER1_type -1 340 232 182 267 83 0 chr15 29292002 29292062 -56403692 - MIR SINE MIR -64 198 134 236 163 0 0 chr15 29292491 29292534 -56403220 + L2 LINE L2 3224 3266 -6 1211 196 29 82 chr15 29293600 29293977 -56401777 - MLT1C LTR MaLR 0 467 111 324 247 31 31 chr15 29294078 29294175 -56401579 - MLT1C LTR MaLR -408 97 1 374 202 43 0 chr15 29294267 29294361 -56401393 - MER5A DNA MER1_type -83 106 9 338 280 173 7 chr15 29294388 29294538 -56401216 + MER5A DNA MER1_type 15 189 0 198 0 0 0 chr15 29294897 29294919 -56400835 + (T)n Simple_repeat Simple_repeat 1 22 0 2236 91 31 0 chr15 29294950 29295236 -56400518 + AluSq SINE Alu 1 295 -18 329 213 13 13 chr15 29295505 29295580 -56400174 + MIR SINE MIR 66 140 -122 620 295 159 6 chr15 29296005 29296364 -56399390 - L2 LINE L2 0 3313 2900 850 230 14 48 chr15 29296515 29296724 -56399030 - MER63A DNA MER1_type -8 202 1 360 304 40 0 chr15 29296736 29296861 -56398893 - L2 LINE L2 -546 2768 2639 236 306 51 20 chr15 29297277 29297375 -56398379 - MIR3 SINE MIR -95 113 13 3453 152 109 8 chr15 29297902 29298572 -56397182 - L1MB3 LINE L1 -2 6181 5444 1085 198 14 9 chr15 29298583 29298800 -56396954 - AluJo SINE Alu -16 296 79 314 244 184 95 chr15 29300980 29301148 -56394606 + MARNA DNA Mariner 400 582 -4 369 259 62 0 chr15 29301805 29301917 -56393837 + MER5C DNA MER1_type 6 124 -200 1984 146 3 13 chr15 29301972 29302450 -56393304 + AluSx SINE Alu 1 475 0 322 200 74 0 chr15 29302475 29302570 -56393184 + MER5C DNA MER1_type 205 306 -18 226 232 61 12 chr15 29303250 29303332 -56392422 - MIR3 SINE MIR -14 194 109 341 272 231 0 chr15 29303931 29304100 -56391654 + MIR SINE MIR 47 254 -8 228 231 0 0 chr15 29304128 29304180 -56391574 - L2 LINE L2 0 3313 3262 252 0 0 0 chr15 29304635 29304663 -56391091 + (A)n Simple_repeat Simple_repeat 1 28 0 437 214 159 8 chr15 29305438 29305564 -56390190 + L1ME3A LINE L1 5729 5873 -297 708 214 29 29 chr15 29305591 29305801 -56389953 + LTR37A LTR ERV1 217 426 0 187 154 0 51 chr15 29306409 29306448 -56389306 - MIR SINE MIR -180 82 46 288 282 26 77 chr15 29306658 29306814 -56388940 + MIR SINE MIR 70 217 -45 1901 139 48 0 chr15 29307110 29307436 -56388318 - AluJo SINE Alu 0 343 4 1393 276 81 16 chr15 29307814 29308525 -56387229 - L2 LINE L2 -2 3311 2539 1179 201 138 56 chr15 29308834 29309178 -56386576 - MLT1G LTR MaLR 0 590 178 495 201 67 22 chr15 29309302 29309436 -56386318 + MLT1L LTR MaLR 476 615 0 1411 278 62 24 chr15 29309843 29310310 -56385444 + LTR16C LTR ERVL 7 491 0 435 236 161 12 chr15 29311686 29311847 -56383907 + MIR SINE MIR 78 262 0 373 206 272 7 chr15 29313368 29313504 -56382250 + MIR SINE MIR 20 191 -71 848 241 133 60 chr15 29313742 29314156 -56381598 + MLT1J LTR MaLR 22 465 -46 2178 212 33 26 chr15 29314165 29314623 -56381131 + MLT1F LTR MaLR 3 463 -79 269 241 0 0 chr15 29314950 29315008 -56380746 + L2 LINE L2 3256 3313 0 1020 233 15 22 chr15 29315282 29315553 -56380201 - LTR37B LTR ERV1 0 468 200 238 291 23 0 chr15 29315601 29315687 -56380067 - LTR37B LTR ERV1 -270 198 111 24 0 0 0 chr15 29316009 29316033 -56379721 + AT_rich Low_complexity Low_complexity 1 24 0 38243 35 25 2 chr15 29316033 29321477 -56374277 - L1PA2 LINE L1 -2 6468 893 639 35 0 0 chr15 29321444 29321542 -56374212 - L1PA2 LINE L1 -6081 380 10 * 604 246 14 0 chr15 29321857 29321995 -56373759 + MER46C DNA MER2_type 85 224 -114 1625 82 4 35 chr15 29322059 29322291 -56373463 - AluY SINE Alu -3 308 84 407 215 243 23 chr15 29322378 29322555 -56373199 - L1ME LINE L1 -356 5765 5550 419 213 107 40 chr15 29325310 29325460 -56370294 + MIR SINE MIR 34 193 -69 2922 262 112 42 chr15 29325960 29327508 -56368246 + L1MD3 LINE L1 5391 7047 -948 2101 128 0 19 chr15 29327515 29327827 -56367927 + AluSx SINE Alu 1 306 -6 791 140 30 35 chr15 29327827 29328016 -56367738 + L1MC4 LINE L1 7125 7357 -685 919 214 116 10 chr15 29328016 29328257 -56367497 - MLT1G LTR MaLR 0 590 343 656 214 0 7 chr15 29328294 29328434 -56367320 - L1MC4a LINE L1 -529 7279 7141 403 206 75 34 chr15 29328597 29328743 -56367011 - L1ME LINE L1 -2338 5470 5319 496 319 110 42 chr15 29328802 29329392 -56366362 - L1ME LINE L1 -875 5271 4642 289 260 10 62 chr15 29329418 29329514 -56366240 - L1ME LINE L1 -1569 4577 4487 2139 131 0 3 chr15 29329718 29330016 -56365738 + AluSq SINE Alu 1 297 -16 311 220 0 0 chr15 29330644 29330703 -56365051 + AluS SINE Alu 1 59 -244 345 325 40 0 chr15 29331265 29331391 -56364363 - MIR SINE MIR -70 192 62 287 309 0 86 chr15 29333047 29333209 -56362545 - L2 LINE L2 -218 3054 2907 512 285 44 18 chr15 29333635 29333921 -56361833 + LTR16A LTR ERVL 114 436 -14 1018 203 6 0 chr15 29335298 29335475 -56360279 - MER45A DNA AcHobo 0 178 1 301 258 43 32 chr15 29335529 29335622 -56360132 - MIR3 SINE MIR -45 163 70 304 210 25 0 chr15 29336106 29336187 -56359567 - MIR3 SINE MIR -19 189 107 270 172 69 0 chr15 29336409 29336467 -56359287 + MIR SINE MIR 113 174 -88 446 278 92 9 chr15 29337475 29337702 -56358052 + MIR SINE MIR 3 248 -14 1561 204 22 20 chr15 29337804 29338125 -56357629 - MLT1A2 LTR MaLR -33 534 21 1606 239 37 26 chr15 29340201 29340580 -56355174 - L1ME3A LINE L1 -5 6165 5779 2168 181 62 2 chr15 29340580 29340984 -56354770 + MSTA LTR MaLR 1 428 0 1606 239 37 26 chr15 29340984 29341065 -56354689 - L1ME3A LINE L1 -391 5779 5700 645 159 0 0 chr15 29341505 29341612 -56354142 + FRAM SINE Alu 70 176 0 1377 245 81 7 chr15 29341831 29342263 -56353491 + MER113 DNA MER1_type? 39 502 -19 891 309 72 33 chr15 29342865 29343130 -56352624 + L1MC4a LINE L1 5255 5508 -2300 5705 111 6 3 chr15 29343130 29344589 -56351165 - L1PA16 LINE L1 0 6166 4678 891 309 72 33 chr15 29344589 29344951 -56350803 + L1MC4a LINE L1 5508 5906 -1902 280 275 186 21 chr15 29346075 29346268 -56349486 + L2 LINE L2 3086 3310 -3 800 208 81 60 chr15 29346681 29347051 -56348703 + L1MC5 LINE L1 7559 7936 -25 611 274 17 0 chr15 29347084 29347259 -56348495 + MIR SINE MIR 82 259 -3 360 212 93 8 chr15 29347310 29347428 -56348326 + L1ME4a LINE L1 5988 6115 -6 1876 164 3 7 chr15 29347441 29347745 -56348009 + AluJb SINE Alu 4 306 -6 207 412 17 0 chr15 29348449 29348568 -56347186 + L2 LINE L2 2937 3057 -215 465 272 0 9 chr15 29348620 29348734 -56347020 + MLT1J LTR MaLR 1 113 -398 2404 48 38 3 chr15 29348734 29349024 -56346730 + AluY SINE Alu 1 300 -11 1116 212 0 5 chr15 29349036 29349248 -56346506 + AluJo SINE Alu 85 295 -17 406 299 28 35 chr15 29349254 29349398 -56346356 + MLT1J LTR MaLR 109 251 -260 367 246 46 15 chr15 29349469 29349599 -56346155 + MLT1J LTR MaLR 378 511 0 617 238 33 41 chr15 29349650 29349894 -56345860 + L1MEc LINE L1 1235 1476 -4920 211 309 0 0 chr15 29349912 29349967 -56345787 + L2 LINE L2 3218 3272 0 412 319 15 7 chr15 29350026 29350161 -56345593 + MIR3 SINE MIR 21 156 -52 2260 108 0 10 chr15 29350188 29350494 -56345260 + AluSx SINE Alu 5 307 -5 1133 175 47 5 chr15 29350979 29351190 -56344564 + L1MB5 LINE L1 5946 6165 -9 21 0 0 0 chr15 29351191 29351212 -56344542 + AT_rich Low_complexity Low_complexity 1 21 0 1793 249 65 26 chr15 29351215 29352003 -56343751 + L1MEc LINE L1 2134 2904 -3311 435 85 0 0 chr15 29352008 29352067 -56343687 + L1MA8 LINE L1 6051 6109 -182 864 133 0 0 chr15 29352068 29352188 -56343566 - AluJb SINE Alu -15 297 178 1083 108 40 6 chr15 29352191 29352367 -56343387 + L1MA8 LINE L1 6106 6287 -4 513 144 0 11 chr15 29352373 29352463 -56343291 + L1MB4 LINE L1 5315 5403 -775 * 9636 136 10 20 chr15 29352440 29354069 -56341685 + L1P LINE L1 1994 3606 -2540 4598 116 17 16 chr15 29354072 29354778 -56340976 - L1P LINE L1 -949 5197 4491 6255 70 8 11 chr15 29354784 29355589 -56340165 + L1PA10 LINE L1 5367 6168 0 4410 150 18 23 chr15 29355630 29356424 -56339330 + L1MB4 LINE L1 5385 6174 -6 230 235 143 0 chr15 29356395 29356441 -56339313 + L1M4 LINE L1 2771 2809 -3337 * 432 116 0 35 chr15 29356441 29356527 -56339227 + L1MB8 LINE L1 6096 6178 0 230 235 143 0 chr15 29356527 29356578 -56339176 + L1M4 LINE L1 2809 2882 -3264 205 264 0 0 chr15 29356578 29356631 -56339123 + MIR3 SINE MIR 141 193 -15 252 286 0 0 chr15 29357347 29357410 -56338344 - L2 LINE L2 -2 3270 3208 507 152 0 0 chr15 29358345 29358424 -56337330 + AluJ/FLAM SINE Alu 2 80 -232 239 329 79 0 chr15 29358438 29358578 -56337176 + MIR SINE MIR 40 190 -72 807 166 18 71 chr15 29359143 29359312 -56336442 - LTR16C LTR ERVL -22 469 310 1911 161 133 26 chr15 29360224 29360645 -56335109 - MER31B LTR ERV1 0 466 1 438 301 66 18 chr15 29360703 29360869 -56334885 - MIR SINE MIR -77 185 12 581 247 22 28 chr15 29361485 29361663 -56334091 + MIR3 SINE MIR 15 191 -17 653 245 27 21 chr15 29361888 29362076 -56333678 - Charlie8 DNA MER1_type -2143 274 86 1656 191 26 59 chr15 29362333 29362720 -56333034 - MLT1A2 LTR MaLR 0 374 1 302 225 0 0 chr15 29363030 29363101 -56332653 - MIR SINE MIR -142 120 50 330 200 61 128 chr15 29363471 29363651 -56332103 - L1ME4a LINE L1 -27 6094 5927 182 200 0 0 chr15 29363696 29363736 -56332018 - MIR SINE MIR -87 121 82 603 40 0 0 chr15 29363737 29363811 -56331943 + (TA)n Simple_repeat Simple_repeat 1 74 0 192 40 0 0 chr15 29364011 29364036 -56331718 + (ATG)n Simple_repeat Simple_repeat 3 27 0 765 303 70 24 chr15 29364096 29364681 -56331073 - L1ME4a LINE L1 -216 5905 5279 1012 265 102 17 chr15 29364696 29365108 -56330646 + MLT1J2 LTR MaLR 4 450 0 316 329 14 21 chr15 29365258 29365401 -56330353 - MER5B DNA MER1_type -36 142 1 300 296 17 17 chr15 29365544 29365659 -56330095 + MIR SINE MIR 48 162 -100 224 182 36 0 chr15 29366061 29366116 -56329638 + (TG)n Simple_repeat Simple_repeat 2 58 0 416 259 42 62 chr15 29366250 29366443 -56329311 - MIR SINE MIR -16 246 58 672 181 58 7 chr15 29366452 29366607 -56329147 + L1MB7 LINE L1 6022 6184 0 405 295 120 64 chr15 29367362 29367466 -56328288 + L2 LINE L2 2212 2309 -1004 1969 223 31 4 chr15 29367466 29367920 -56327834 + MLT1C LTR MaLR 1 466 -1 405 295 120 64 chr15 29367920 29368589 -56327165 + L2 LINE L2 2309 3056 -257 791 258 176 34 chr15 29368655 29369012 -56326742 - MLT1J LTR MaLR -4 507 100 546 229 0 76 chr15 29369251 29369338 -56326416 + MIR SINE MIR 118 193 -69 1954 121 11 4 chr15 29369338 29369642 -56326112 + AluSx SINE Alu 1 306 0 546 229 0 76 chr15 29369642 29369708 -56326046 + MIR SINE MIR 193 262 0 802 170 14 0 chr15 29370869 29371016 -56324738 + FRAM SINE Alu 13 161 -15 263 212 61 8 chr15 29371058 29371190 -56324564 + (TA)n Simple_repeat Simple_repeat 1 139 0 3104 86 17 0 chr15 29371190 29371609 -56324145 + L1PA10 LINE L1 5743 6168 0 24 0 0 0 chr15 29371646 29371670 -56324084 + AT_rich Low_complexity Low_complexity 1 24 0 325 326 16 64 chr15 29371687 29371874 -56323880 + HAL1b LINE L1 13 190 -1158 241 151 19 0 chr15 29372021 29372074 -56323680 + L1MD3 LINE L1 7940 7993 -2 264 30 0 0 chr15 29372141 29372174 -56323580 + (TG)n Simple_repeat Simple_repeat 1 33 0 2164 233 72 65 chr15 29372178 29373077 -56322677 + L1MC5 LINE L1 6625 7530 -431 400 284 47 62 chr15 29373169 29373380 -56322374 + L1ME3A LINE L1 5962 6169 -1 500 246 78 24 chr15 29373727 29373894 -56321860 + MIR3 SINE MIR 33 208 0 436 282 72 28 chr15 29373899 29374080 -56321674 + MER5A DNA MER1_type 1 189 0 352 228 30 40 chr15 29374113 29374214 -56321540 + LTR48B LTR ERV1 1 100 -544 * 1728 215 92 10 chr15 29374188 29374602 -56321152 + MER39 LTR ERV1 260 707 0 229 330 62 0 chr15 29374688 29374785 -56320969 - MIR SINE MIR -61 201 99 184 188 118 71 chr15 29375504 29375589 -56320165 + L3 LINE CR1 1345 1433 -144 5032 11 0 0 chr15 29375939 29376496 -56319258 - L1PA2 LINE L1 0 6155 5599 294 85 0 21 chr15 29377725 29377772 -56317982 - L1MC4 LINE L1 -1 8041 7996 * 584 212 58 0 chr15 29377765 29377902 -56317852 - L1MC4 LINE L1 -484 7558 7414 268 257 80 9 chr15 29378205 29378318 -56317436 + L1ME LINE L1 5776 5896 -225 260 143 0 41 chr15 29378423 29378472 -56317282 + L2 LINE L2 2695 2741 -573 1961 142 0 7 chr15 29378576 29378872 -56316882 - AluSx SINE Alu -18 294 1 651 191 22 7 chr15 29378886 29379022 -56316732 + MER103 DNA DNA 20 157 -9 701 234 20 50 chr15 29379066 29379267 -56316487 + MLT1J2 LTR MaLR 254 448 -2 506 288 151 14 chr15 29379345 29379564 -56316190 - MIR SINE MIR 0 262 14 1181 167 29 9 chr15 29379689 29379899 -56315855 + MER20 DNA MER1_type 1 214 -5 193 285 215 38 chr15 29380318 29380504 -56315250 - L3 LINE CR1 -15 1562 1344 210 71 0 0 chr15 29380774 29380802 -56314952 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 238 329 14 0 chr15 29380803 29380876 -56314878 - L2 LINE L2 -14 3299 3226 261 335 148 29 chr15 29381083 29381462 -56314292 - L2 LINE L2 -343 2971 2548 1913 100 25 62 chr15 29382040 29382360 -56313394 + AluSg SINE Alu 1 308 -2 239 313 0 30 chr15 29383333 29383400 -56312354 + L2 LINE L2 3187 3251 -21 769 210 117 37 chr15 29383899 29384113 -56311641 + MIR SINE MIR 19 249 -13 947 291 76 20 chr15 29384605 29385065 -56310689 + L2 LINE L2 2826 3311 -2 234 293 9 69 chr15 29386200 29386316 -56309438 + MIR SINE MIR 148 256 -6 1268 256 96 54 chr15 29386969 29387540 -56308214 - MLT1G1 LTR MaLR 0 595 1 1492 224 21 45 chr15 29387737 29388116 -56307638 - MLT1A2 LTR MaLR -4 370 1 270 0 0 0 chr15 29388594 29388624 -56307130 + (A)n Simple_repeat Simple_repeat 1 30 0 393 214 48 0 chr15 29389106 29389190 -56306564 - LTR16C LTR ERVL 0 491 404 222 323 68 53 chr15 29390678 29391015 -56304739 - L2 LINE L2 -606 2708 2367 216 273 0 0 chr15 29391986 29392063 -56303691 + GA-rich Low_complexity Low_complexity 3 79 0 493 282 127 0 chr15 29392321 29392463 -56303291 + MIR3 SINE MIR 20 179 -29 372 217 94 38 chr15 29392800 29392906 -56302848 + MIR SINE MIR 18 129 -79 2432 74 0 0 chr15 29393066 29393377 -56302377 - AluY SINE Alu 0 311 1 2198 107 3 0 chr15 29393392 29393701 -56302053 - AluSp SINE Alu -2 311 2 1336 231 134 26 chr15 29393701 29394130 -56301624 - LTR33A LTR ERVL -33 490 44 521 291 271 63 chr15 29394159 29395131 -56300623 - L3 LINE CR1 -213 1364 191 194 192 19 0 chr15 29395566 29395618 -56300136 + CT-rich Low_complexity Low_complexity 2 54 0 826 244 65 0 chr15 29396046 29396275 -56299479 + L1ME4a LINE L1 5654 5897 -224 370 248 101 31 chr15 29396296 29396425 -56299329 + L1ME4a LINE L1 5977 6114 -7 2342 87 3 0 chr15 29398121 29398432 -56297322 - AluSp SINE Alu -1 312 1 420 257 181 7 chr15 29398523 29398667 -56297087 - MIR SINE MIR -12 250 82 397 270 68 33 chr15 29398852 29399041 -56296713 + MIR SINE MIR 1 194 -14 272 263 21 32 chr15 29399744 29399839 -56295915 + C-rich Low_complexity Low_complexity 5 98 0 202 194 28 46 chr15 29400264 29400372 -56295382 + (CCG)n Simple_repeat Simple_repeat 2 107 0 211 258 200 17 chr15 29401592 29401712 -56294042 - MIR SINE MIR -58 204 63 502 245 260 10 chr15 29402930 29403130 -56292624 + MIR SINE MIR 13 262 0 396 59 0 0 chr15 29403315 29403366 -56292388 + (TG)n Simple_repeat Simple_repeat 1 51 0 182 348 42 59 chr15 29405451 29405569 -56290185 - L2 LINE L2 -45 3227 3112 182 191 88 88 chr15 29405669 29405737 -56290017 + L2 LINE L2 3143 3210 -62 252 200 0 0 chr15 29405773 29405828 -56289926 + (TGGA)n Simple_repeat Simple_repeat 1 55 0 1316 239 92 66 chr15 29405828 29406250 -56289504 - LTR16A LTR ERVL 0 450 18 207 0 0 0 chr15 29407100 29407123 -56288631 + (TA)n Simple_repeat Simple_repeat 1 23 0 1909 98 83 0 chr15 29407875 29408151 -56287603 + AluSx SINE Alu 1 299 -13 692 271 104 5 chr15 29408262 29408483 -56287271 - MIR SINE MIR -5 257 15 21 0 0 0 chr15 29409400 29409421 -56286333 + AT_rich Low_complexity Low_complexity 1 21 0 228 355 139 33 chr15 29409984 29410438 -56285316 + L2 LINE L2 1960 2461 -853 350 204 97 53 chr15 29410465 29410578 -56285176 - MIR SINE MIR -79 183 66 313 284 39 58 chr15 29410627 29410782 -56284972 + L1MB8 LINE L1 5734 5885 -293 186 43 0 0 chr15 29410836 29410859 -56284895 + (CA)n Simple_repeat Simple_repeat 1 23 0 309 227 216 0 chr15 29412133 29412221 -56283533 + Tigger3(Golem) DNA MER2_type 1 107 -2922 4467 118 45 1 chr15 29412222 29412935 -56282819 + Tigger3(Golem) DNA MER2_type 2284 3027 -2 22 0 0 0 chr15 29412978 29413000 -56282754 + AT_rich Low_complexity Low_complexity 1 22 0 782 254 70 12 chr15 29413972 29414228 -56281526 + HAL1 LINE L1 1428 1698 -809 303 196 0 0 chr15 29414232 29414288 -56281466 + MER58 DNA MER1_type 1 56 -2364 256 190 228 0 chr15 29414335 29414414 -56281340 + MER58 DNA MER1_type 2318 2414 -6 1589 236 106 35 chr15 29414431 29415061 -56280693 + HAL1 LINE L1 1706 2380 -127 1017 144 5 43 chr15 29415159 29415346 -56280408 - FRAM SINE Alu -2 174 1 200 310 113 55 chr15 29415628 29415957 -56279797 - L2 LINE L2 -93 3179 2832 239 208 21 0 chr15 29416754 29416802 -56278952 - MER20B DNA MER1_type -705 78 30 1859 149 47 90 chr15 29417027 29417471 -56278283 - MER61B LTR ERV1 0 425 1 249 264 78 90 chr15 29418169 29418336 -56277418 - MIR3 SINE MIR -19 189 25 1833 301 107 27 chr15 29420783 29421747 -56274007 + L1ME LINE L1 3545 4430 -1732 2537 75 3 0 chr15 29421747 29422052 -56273702 + AluSp SINE Alu 1 306 -7 1833 301 107 27 chr15 29422052 29422602 -56273152 + L1ME LINE L1 4430 4935 -1227 2193 113 3 3 chr15 29422602 29422894 -56272860 + AluSp SINE Alu 1 292 -21 1833 301 107 27 chr15 29422894 29423454 -56272300 + L1ME LINE L1 4935 5794 -368 2832 10 0 16 chr15 29423966 29424278 -56271476 - AluYa5 SINE Alu -4 307 1 422 250 45 80 chr15 29424421 29424621 -56271133 + MIR SINE MIR 27 219 -43 476 311 25 0 chr15 29425184 29425354 -56270400 + MIR SINE MIR 17 189 -65 2491 62 3 10 chr15 29426078 29426382 -56269372 + AluSg SINE Alu 1 302 -8 180 313 0 12 chr15 29426589 29426669 -56269085 - L2 LINE L2 -919 2395 2317 236 270 81 86 chr15 29426682 29426856 -56268898 + L2 LINE L2 2304 2476 -838 1409 233 142 57 chr15 29426967 29427580 -56268174 - Charlie7 DNA MER1_type -1892 720 56 2345 98 0 7 chr15 29428580 29428887 -56266867 + AluSg SINE Alu 1 305 -5 272 118 0 20 chr15 29430532 29430583 -56265171 + (TA)n Simple_repeat Simple_repeat 2 51 0 475 294 14 0 chr15 29430583 29430729 -56265025 + MER103 DNA DNA 10 157 -9 427 245 28 0 chr15 29431639 29431745 -56264009 - MER81 DNA DNA -3 111 3 1576 189 32 20 chr15 29431816 29432248 -56263506 - MLT1D LTR MaLR -8 497 1 23 0 0 0 chr15 29432285 29432308 -56263446 + AT_rich Low_complexity Low_complexity 1 23 0 546 159 91 0 chr15 29432641 29432729 -56263025 - AluJb SINE Alu -88 224 129 279 0 0 0 chr15 29432734 29432765 -56262989 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1847 148 0 0 chr15 29432767 29433030 -56262724 - AluJb SINE Alu -28 284 22 1957 210 57 21 chr15 29433161 29433741 -56262013 + Charlie2 DNA MER1_type 2230 2830 -32 650 174 23 30 chr15 29433741 29433873 -56261881 + FLAM_A SINE Alu 1 131 -2 26 23 0 23 chr15 29433882 29433902 -56261852 + AT_rich Low_complexity Low_complexity 1 20 -23 1956 150 7 0 chr15 29433902 29434189 -56261565 - AluSx SINE Alu -23 289 1 26 23 0 23 chr15 29434189 29434212 -56261542 + AT_rich Low_complexity Low_complexity 20 43 0 189 203 130 29 chr15 29434393 29434462 -56261292 - L2 LINE L2 -29 3243 3168 691 297 48 23 chr15 29434574 29434884 -56260870 - MARNA DNA Mariner -14 572 255 1292 225 73 31 chr15 29435568 29435990 -56259764 - HsTC2 DNA Tc2 0 1898 1283 21 57 0 0 chr15 29436558 29436593 -56259161 + AT_rich Low_complexity Low_complexity 1 35 0 226 229 0 0 chr15 29437556 29437604 -56258150 + MIR SINE MIR 156 203 -59 2249 115 0 0 chr15 29437833 29438141 -56257613 + AluSx SINE Alu 1 308 0 1907 134 3 35 chr15 29440727 29441041 -56254713 - AluJo SINE Alu -8 304 1 2397 158 21 32 chr15 29441959 29442390 -56253364 - MSTB LTR MaLR 0 426 1 388 243 128 34 chr15 29443345 29443493 -56252261 + MIR3 SINE MIR 23 184 -24 22 0 0 0 chr15 29443944 29443966 -56251788 + AT_rich Low_complexity Low_complexity 1 22 0 373 125 12 38 chr15 29444013 29444093 -56251661 - L1MB8 LINE L1 0 6178 6101 677 179 0 0 chr15 29444106 29444212 -56251542 + Tigger3(Golem) DNA MER2_type 3 108 -2921 * 4614 98 45 6 chr15 29444204 29444908 -56250846 + Tigger3(Golem) DNA MER2_type 2278 3009 -20 286 253 30 10 chr15 29444918 29445017 -56250737 - L1MB8 LINE L1 -82 6096 5996 401 320 8 8 chr15 29445464 29445589 -56250165 + MER5A DNA MER1_type 55 179 -10 204 67 0 0 chr15 29449135 29449165 -56246589 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2659 95 62 61 chr15 29449259 29449512 -56246242 - MER4E LTR ERV1 0 766 515 2451 89 0 0 chr15 29449512 29449825 -56245929 - AluSq SINE Alu 0 313 1 2659 95 62 61 chr15 29449825 29450181 -56245573 - MER4E LTR ERV1 -251 515 1 730 215 46 76 chr15 29451490 29451528 -56244226 - LTR33A LTR ERVL 0 523 485 1444 51 0 0 chr15 29451528 29451703 -56244051 + L1PA8 LINE L1 5991 6165 -7 730 215 46 76 chr15 29451703 29451901 -56243853 - LTR33A LTR ERVL -38 485 294 312 254 0 0 chr15 29452187 29452250 -56243504 - MER94 DNA DNA 0 134 72 25 31 0 0 chr15 29452891 29452923 -56242831 + AT_rich Low_complexity Low_complexity 1 32 0 4013 211 104 17 chr15 29453916 29454748 -56241006 + L1M4 LINE L1 3901 4848 -1298 2110 125 33 27 chr15 29454748 29455083 -56240671 - MER1B DNA MER1_type 0 337 1 4013 211 104 17 chr15 29455083 29455314 -56240440 + L1M4 LINE L1 4848 5057 -1089 * 11198 164 23 20 chr15 29455313 29457228 -56238526 + L1 LINE L1 1 1920 -4929 1004 133 24 0 chr15 29457229 29457394 -56238360 + L1M1 LINE L1 14 182 -7383 43858 31 22 2 chr15 29457394 29463422 -56232332 + L1PA3 LINE L1 4 6155 0 21983 134 24 19 chr15 29463438 29466264 -56229490 + L1M1 LINE L1 173 3020 -4545 2102 59 12 4 chr15 29466264 29466517 -56229237 + AluSc SINE Alu 53 307 -2 21983 134 24 19 chr15 29466517 29467344 -56228410 + L1M1 LINE L1 3020 3842 -3723 1946 133 53 0 chr15 29467344 29467629 -56228125 + AluSx SINE Alu 3 302 -10 2744 138 30 56 chr15 29467637 29467698 -56228056 + L1 LINE L1 1907 1968 -4881 2348 108 0 0 chr15 29467698 29467994 -56227760 + AluSx SINE Alu 1 296 -16 2744 138 30 56 chr15 29467994 29468419 -56227335 + L1 LINE L1 1968 2380 -4469 2347 93 0 13 chr15 29468419 29468721 -56227033 + AluY SINE Alu 1 298 -13 2744 138 30 56 chr15 29468721 29468791 -56226963 + L1 LINE L1 2380 2450 -4399 316 167 15 15 chr15 29468797 29468863 -56226891 + L1 LINE L1 5006 5071 -1777 2226 105 3 16 chr15 29468863 29469168 -56226586 + AluSx SINE Alu 1 301 -11 214 182 0 23 chr15 29469172 29469216 -56226538 + GA-rich Low_complexity Low_complexity 3 45 0 436 295 113 8 chr15 29470208 29470429 -56225325 + MIR SINE MIR 14 252 -10 2215 107 14 0 chr15 29470611 29470902 -56224852 - AluSq SINE Alu -18 295 1 404 322 13 0 chr15 29470925 29471074 -56224680 + MER117 DNA MER1_type 11 161 -36 2515 265 25 15 chr15 29471247 29472002 -56223752 + L1M2 LINE L1 1054 1816 -5033 * 6848 162 45 20 chr15 29471994 29472052 -56223702 + L1PA16 LINE L1 3439 3494 -2672 183 42 0 0 chr15 29472052 29472076 -56223678 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6848 162 45 20 chr15 29472076 29473737 -56222017 + L1PA16 LINE L1 3494 5113 -1053 2556 54 0 0 chr15 29473737 29474035 -56221719 + AluY SINE Alu 1 298 -13 6848 162 45 20 chr15 29474035 29474200 -56221554 + L1PA16 LINE L1 5113 5273 -893 1857 105 3 114 chr15 29474200 29474534 -56221220 + AluSp SINE Alu 1 297 -16 6848 162 45 20 chr15 29474534 29475147 -56220607 + L1PA16 LINE L1 5273 6127 -39 5620 131 23 57 chr15 29475211 29477170 -56218584 + L1MA5 LINE L1 4403 6298 -2 245 136 0 0 chr15 29477197 29477241 -56218513 + LTR54 LTR ERV1 442 485 -25 23 0 0 0 chr15 29477472 29477495 -56218259 + AT_rich Low_complexity Low_complexity 1 23 0 841 198 31 27 chr15 29478016 29478238 -56217516 + L1MC1 LINE L1 44 266 -6130 1400 217 34 118 chr15 29478263 29478421 -56217333 + L1MC1 LINE L1 507 677 -5719 3274 102 4 4 chr15 29478421 29478900 -56216854 - L1PA14 LINE L1 0 6161 5683 1400 217 34 118 chr15 29478900 29479231 -56216523 + L1MC1 LINE L1 677 932 -5464 2342 80 3 3 chr15 29479231 29479530 -56216224 + AluY SINE Alu 1 299 -12 1400 217 34 118 chr15 29479530 29479685 -56216069 + L1MC1 LINE L1 932 1098 -5298 1286 160 101 0 chr15 29479931 29480218 -56215536 - MER33 DNA MER1_type 0 324 9 907 262 104 37 chr15 29480237 29480592 -56215162 - MLT1J2 LTR MaLR 0 450 72 340 266 28 55 chr15 29480978 29481087 -56214667 - MIR3 SINE MIR -16 192 87 240 255 19 47 chr15 29481204 29481310 -56214444 - MLT1H LTR MaLR -16 533 431 760 224 33 19 chr15 29481324 29481538 -56214216 - MER112 DNA MER1_type -39 221 5 1730 192 21 0 chr15 29481556 29481847 -56213907 + AluJb SINE Alu 1 297 -15 2352 109 0 0 chr15 29482313 29482615 -56213139 + AluSq SINE Alu 1 302 -11 697 221 43 75 chr15 29482615 29482868 -56212886 + L1ME2 LINE L1 5900 6144 -20 263 211 106 21 chr15 29482881 29483023 -56212731 + L1MC5 LINE L1 7772 7925 -36 3111 234 34 22 chr15 29484643 29485222 -56210532 + L1MC1 LINE L1 3312 3882 -2333 2133 130 3 17 chr15 29485222 29485522 -56210232 + AluSx SINE Alu 1 296 -16 3111 234 34 22 chr15 29485522 29485610 -56210144 + L1MC1 LINE L1 3882 3967 -2248 2406 97 3 0 chr15 29485610 29485919 -56209835 + AluSg SINE Alu 1 310 0 3111 234 34 22 chr15 29485919 29486212 -56209542 + L1MC1 LINE L1 3967 4285 -1930 * 4928 165 71 27 chr15 29486206 29486518 -56209236 + L1MC1 LINE L1 4618 4915 -1487 2807 121 29 2 chr15 29486518 29486933 -56208821 + MSTB LTR MaLR 1 426 0 4928 165 71 27 chr15 29486933 29487429 -56208325 + L1MC1 LINE L1 4915 5388 -1014 183 100 0 0 chr15 29487429 29487459 -56208295 + (CA)n Simple_repeat Simple_repeat 1 30 0 4928 165 71 27 chr15 29487459 29488370 -56207384 + L1MC1 LINE L1 5388 6383 -19 2426 74 0 7 chr15 29489858 29490154 -56205600 + AluSp SINE Alu 1 294 -19 26 82 0 0 chr15 29490964 29491025 -56204729 + AT_rich Low_complexity Low_complexity 1 61 0 25 31 0 0 chr15 29492065 29492097 -56203657 + AT_rich Low_complexity Low_complexity 1 32 0 4183 150 50 25 chr15 29492578 29492863 -56202891 + L1MB3 LINE L1 5328 5604 -579 2025 139 0 7 chr15 29492863 29493158 -56202596 + AluSx SINE Alu 1 293 -19 4183 150 50 25 chr15 29493158 29493705 -56202049 + L1MB3 LINE L1 5604 6181 -2 22 0 0 0 chr15 29494210 29494232 -56201522 + AT_rich Low_complexity Low_complexity 1 22 0 1913 168 7 0 chr15 29494603 29494906 -56200848 + AluJb SINE Alu 1 305 -7 1510 54 0 0 chr15 29495156 29495341 -56200413 + L1PA3 LINE L1 5969 6153 -2 413 333 64 25 chr15 29495468 29495750 -56200004 + L2 LINE L2 3016 3308 -5 31 26 0 0 chr15 29496261 29496299 -56199455 + AT_rich Low_complexity Low_complexity 1 38 0 2376 99 0 0 chr15 29496403 29496695 -56199059 - AluSg SINE Alu -18 292 1 194 289 141 27 chr15 29498444 29498593 -56197161 + L2 LINE L2 1235 1400 -1914 2266 117 0 28 chr15 29498747 29499064 -56196690 + AluSx SINE Alu 1 308 -4 400 199 11 105 chr15 29499065 29499246 -56196508 - L1MEc LINE L1 -5154 1242 1079 1999 135 42 0 chr15 29499359 29499648 -56196106 + AluSx SINE Alu 1 301 -11 236 102 20 0 chr15 29499701 29499750 -56196004 + L1M4 LINE L1 4974 5023 -1123 279 128 0 21 chr15 29502173 29502220 -56193534 - LTR56 LTR ERV1 -51 394 349 461 68 82 0 chr15 29502592 29502665 -56193089 + L1MA9 LINE L1 6193 6271 -41 1020 153 20 7 chr15 29502668 29503018 -56192736 - Tigger2 DNA MER2_type -14 2704 4 254 116 0 0 chr15 29503018 29503061 -56192693 + L1MA9 LINE L1 6266 6308 -4 1641 209 88 19 chr15 29503780 29504200 -56191554 + LTR16A LTR ERVL 1 449 -1 1457 156 15 95 chr15 29504363 29504720 -56191034 + AluSx SINE Alu 1 312 0 422 276 129 9 chr15 29505687 29505919 -56189835 + MARNA DNA Mariner 20 279 -307 220 304 38 0 chr15 29505987 29506066 -56189688 - MIR SINE MIR 0 262 181 791 246 75 24 chr15 29506242 29506430 -56189324 + Tigger5 DNA MER2_type 1 178 -2145 2185 126 3 3 chr15 29506430 29506739 -56189015 + AluSq SINE Alu 1 309 -4 791 246 75 24 chr15 29506739 29506884 -56188870 + Tigger5 DNA MER2_type 178 2323 0 21311 38 0 3 chr15 29507318 29510739 -56185015 + L1PA5 LINE L1 2726 6154 0 1096 266 83 31 chr15 29511563 29512021 -56183733 + MLT1J LTR MaLR 26 507 -4 503 270 95 7 chr15 29512105 29512242 -56183512 - MIR SINE MIR -109 153 5 300 299 215 0 chr15 29512352 29512459 -56183295 + MIR3 SINE MIR 28 157 -51 210 296 54 65 chr15 29512496 29512654 -56183100 - MER5B DNA MER1_type -15 174 2 2037 169 53 11 chr15 29512727 29512935 -56182819 - MSTD LTR MaLR -2 394 161 2257 111 3 3 chr15 29512935 29513241 -56182513 - AluSp SINE Alu -7 306 1 2037 169 53 11 chr15 29513241 29513410 -56182344 - MSTD LTR MaLR -235 161 1 1852 208 97 34 chr15 29513410 29513886 -56181868 - MSTD-int LTR MaLR 0 1735 1230 3958 229 36 72 chr15 29514036 29515361 -56180393 - MSTD-int LTR MaLR -456 1279 2 1390 219 102 43 chr15 29515363 29515444 -56180310 - MSTD LTR MaLR 0 396 321 2119 125 0 0 chr15 29515444 29515725 -56180029 + AluSx SINE Alu 25 305 -7 1390 219 102 43 chr15 29515725 29516017 -56179737 - MSTD LTR MaLR -75 321 1 276 267 22 22 chr15 29516021 29516111 -56179643 - L3 LINE CR1 -59 1518 1429 36 70 0 0 chr15 29516818 29516889 -56178865 + AT_rich Low_complexity Low_complexity 1 71 0 351 247 0 17 chr15 29517062 29517240 -56178514 + G-rich Low_complexity Low_complexity 3 177 0 1143 117 0 0 chr15 29517251 29517279 -56178475 + (G)n Simple_repeat Simple_repeat 1 208 0 1143 117 0 0 chr15 29517279 29517459 -56178295 + (G)n Simple_repeat Simple_repeat 1 180 0 3897 186 51 16 chr15 29517938 29518860 -56176894 - L1 LINE L1 -1612 4534 3581 321 26 0 0 chr15 29518860 29518898 -56176856 + (TC)n Simple_repeat Simple_repeat 2 39 0 803 171 0 0 chr15 29518903 29519026 -56176728 - FLAM_C SINE Alu -20 123 1 3162 175 26 18 chr15 29519069 29519449 -56176305 + L1MB1 LINE L1 4656 5031 -1137 2152 113 3 0 chr15 29519449 29519731 -56176023 - AluSp SINE Alu -30 283 1 3162 175 26 18 chr15 29519731 29520288 -56175466 + L1MB1 LINE L1 5031 5582 -586 1912 173 3 3 chr15 29520288 29520588 -56175166 + AluJo SINE Alu 1 300 -12 1055 167 0 11 chr15 29520418 29520577 -56175177 + AluJo/FRAM SINE Alu 131 289 -23 3162 175 26 18 chr15 29520588 29521446 -56174308 + L1MB1 LINE L1 5582 6167 -1 2199 132 0 0 chr15 29520589 29520885 -56174869 + AluSx SINE Alu 1 296 -16 1055 167 0 11 chr15 29521446 29521460 -56174294 + AluJo/FRAM SINE Alu 289 302 -10 6572 185 21 26 chr15 29521946 29522343 -56173411 + L1M2c LINE L1 1071 1468 -5320 2220 109 0 0 chr15 29522343 29522656 -56173098 + AluSx SINE Alu 1 313 0 6572 185 21 26 chr15 29522656 29524400 -56171354 + L1M2c LINE L1 1468 3200 -3588 3395 102 44 58 chr15 29524401 29524896 -56170858 + L1MA5A LINE L1 5665 6150 -147 2426 70 0 3 chr15 29524896 29525198 -56170556 + AluY SINE Alu 1 301 -10 3395 102 44 58 chr15 29525198 29525341 -56170413 + L1MA5A LINE L1 6150 6294 -3 2585 74 20 3 chr15 29525497 29525849 -56169905 + L1PA13 LINE L1 5804 6161 -2 21 36 0 0 chr15 29525886 29525914 -56169840 + AT_rich Low_complexity Low_complexity 1 28 0 1739 141 36 4 chr15 29525937 29526233 -56169521 + AluSx SINE Alu 1 305 0 1774 153 10 34 chr15 29526735 29527030 -56168724 + AluSx SINE Alu 1 288 -24 246 367 75 8 chr15 29527154 29527274 -56168480 - L2 LINE L2 -17 3255 3128 1026 231 22 6 chr15 29527312 29527668 -56168086 - MLT1D LTR MaLR -114 391 1 2378 85 3 3 chr15 29528018 29528323 -56167431 + AluSq SINE Alu 1 305 -8 2223 105 0 10 chr15 29528638 29528934 -56166820 + AluSg SINE Alu 3 295 -15 609 250 93 0 chr15 29529180 29529320 -56166434 + MER21B LTR ERV1 338 490 -373 240 204 0 0 chr15 29529355 29529399 -56166355 + LTR54B LTR ERV1 409 452 -46 4049 219 47 11 chr15 29529408 29529637 -56166117 + L1M2 LINE L1 1226 1445 -5404 2154 149 68 29 chr15 29529637 29529862 -56165892 - MSTA LTR MaLR -2 426 176 333 0 0 0 chr15 29529862 29529899 -56165855 + (TG)n Simple_repeat Simple_repeat 1 37 0 2154 149 68 29 chr15 29529899 29530083 -56165671 - MSTA LTR MaLR -252 176 1 4049 219 47 11 chr15 29530083 29530860 -56164894 + L1M2 LINE L1 1445 2268 -4581 243 108 27 0 chr15 29530861 29530898 -56164856 + Alu SINE Alu 1 38 -261 14832 204 30 17 chr15 29531023 29532812 -56162942 - L1MA4A LINE L1 -29 6916 5153 225 0 0 0 chr15 29532812 29532837 -56162917 + (TATTG)n Simple_repeat Simple_repeat 2 26 0 14832 204 30 17 chr15 29532837 29535629 -56160125 - L1MA4A LINE L1 -1792 5153 2203 2103 104 4 0 chr15 29535629 29535897 -56159857 - AluSp SINE Alu -16 297 29 523 275 51 11 chr15 29536701 29536879 -56158875 - MER5A DNA MER1_type -3 186 2 2163 122 16 0 chr15 29536883 29537187 -56158567 + AluSx SINE Alu 1 309 -3 1671 223 141 76 chr15 29537246 29538021 -56157733 + LTR1B LTR ERV1 2 826 0 1951 128 80 14 chr15 29538064 29538416 -56157338 + THE1C LTR MaLR 1 375 0 569 163 0 0 chr15 29538677 29538769 -56156985 + L1MDa LINE L1 22 113 -6427 2016 218 120 4 chr15 29538781 29539281 -56156473 + L1MDa LINE L1 210 767 -5773 1160 240 68 3 chr15 29539286 29539415 -56156339 + L1MDa LINE L1 2932 3051 -3489 5979 40 18 0 chr15 29539415 29540143 -56155611 + L1PA5 LINE L1 5397 6137 -17 1160 240 68 3 chr15 29540143 29540367 -56155387 + L1MDa LINE L1 3051 3308 -3232 207 0 0 0 chr15 29540374 29540397 -56155357 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1009 197 71 0 chr15 29540435 29540689 -56155065 + L1MDa LINE L1 3867 4138 -2402 413 240 10 0 chr15 29540686 29540790 -56154964 + L1MDa LINE L1 4629 4733 -1807 * 269 279 0 0 chr15 29540790 29540851 -56154903 + MER2 DNA MER2_type 1 61 -284 * 4251 173 7 18 chr15 29540797 29541527 -56154227 - MER44D DNA MER2_type -7 598 5 427 252 84 0 chr15 29541629 29541784 -56153970 + L1MC4 LINE L1 7190 7357 -685 668 178 54 0 chr15 29541784 29541913 -56153841 - FLAM_C SINE Alu -7 136 1 714 289 79 65 chr15 29541913 29542325 -56153429 + L1MC4 LINE L1 7352 7776 -266 2339 84 0 7 chr15 29542325 29542624 -56153130 - AluSc SINE Alu -10 299 3 714 289 79 65 chr15 29542624 29542769 -56152985 + L1MC4 LINE L1 7776 7917 -125 2209 129 0 0 chr15 29542828 29543137 -56152617 + AluSx SINE Alu 1 309 -3 1822 232 45 26 chr15 29543348 29543817 -56151937 + MLT1E LTR MaLR 116 593 0 2894 98 9 5 chr15 29543826 29544246 -56151508 + L1PA10 LINE L1 5747 6168 0 191 241 69 0 chr15 29544252 29544310 -56151444 + MIR SINE MIR 179 240 -22 1960 125 3 10 chr15 29545412 29545708 -56150046 - AluSx SINE Alu 0 312 19 2497 64 3 0 chr15 29545866 29546164 -56149590 - AluSp SINE Alu -14 299 1 2112 126 7 7 chr15 29547420 29547721 -56148033 - AluJb SINE Alu -11 301 1 389 98 0 0 chr15 29547734 29547810 -56147944 - Alu SINE Alu 0 306 231 1296 65 0 0 chr15 29547811 29547966 -56147788 - AluSx SINE Alu -157 155 1 27 29 0 0 chr15 29548329 29548363 -56147391 + AT_rich Low_complexity Low_complexity 1 34 0 1381 169 89 0 chr15 29550862 29551099 -56144655 + Tigger7 DNA MER2_type 10 267 -466 462 227 10 10 chr15 29551097 29551194 -56144560 + Tigger7 DNA MER2_type 2489 2585 -2 * 21 36 0 0 chr15 29551416 29551444 -56144310 + AT_rich Low_complexity Low_complexity 1 28 0 2010 139 14 23 chr15 29551618 29551964 -56143790 + L1PA16 LINE L1 5818 6160 -6 251 176 59 20 chr15 29552161 29552263 -56143491 + (TA)n Simple_repeat Simple_repeat 2 107 0 2184 133 0 0 chr15 29552638 29552939 -56142815 + AluSx SINE Alu 1 301 -11 592 231 7 42 chr15 29553642 29553785 -56141969 - L2 LINE L2 0 3313 3176 885 179 28 17 chr15 29554810 29554989 -56140765 + MER58C DNA MER1_type 29 209 -6 1664 124 0 0 chr15 29555439 29555664 -56140090 - AluSx SINE Alu -87 225 1 21 36 0 0 chr15 29555763 29555791 -56139963 + AT_rich Low_complexity Low_complexity 1 28 0 3061 223 101 47 chr15 29555925 29556838 -56138916 - L1MDa LINE L1 -5555 985 35 298 330 55 86 chr15 29557086 29557434 -56138320 + L2 LINE L2 2921 3257 -15 332 268 14 0 chr15 29557592 29557663 -56138091 - L2 LINE L2 -47 3225 3154 2185 107 0 20 chr15 29557903 29558201 -56137553 - AluSg SINE Alu -18 292 1 277 253 47 30 chr15 29558292 29558427 -56137327 + L1MC4a LINE L1 2380 6174 0 25 0 0 0 chr15 29558446 29558471 -56137283 + AT_rich Low_complexity Low_complexity 1 25 0 197 391 14 0 chr15 29558727 29558796 -56136958 + L2 LINE L2 3154 3223 -49 335 352 116 44 chr15 29559530 29559780 -56135974 + L2 LINE L2 2985 3252 -20 22 0 0 0 chr15 29561966 29561988 -56133766 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr15 29562391 29562412 -56133342 + AT_rich Low_complexity Low_complexity 1 21 0 363 188 70 102 chr15 29562432 29562560 -56133194 + L1MC4 LINE L1 7902 8025 -17 2213 105 7 0 chr15 29562577 29562873 -56132881 + AluSx SINE Alu 1 298 -14 1189 192 126 53 chr15 29562997 29563256 -56132498 + MER58B DNA MER1_type 1 240 -2180 180 0 0 0 chr15 29563256 29563276 -56132478 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 2318 84 3 0 chr15 29563283 29563568 -56132186 - AluSg SINE Alu -24 286 1 1189 192 126 53 chr15 29563568 29563618 -56132136 + MER58B DNA MER1_type 245 341 0 2233 95 3 0 chr15 29564489 29564783 -56130971 + AluSp SINE Alu 1 295 -18 21 57 0 0 chr15 29565022 29565057 -56130697 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr15 29566250 29566283 -56129471 + AT_rich Low_complexity Low_complexity 1 33 0 2037 128 3 7 chr15 29566288 29566578 -56129176 + AluSx SINE Alu 21 309 -3 279 309 209 22 chr15 29567017 29567156 -56128598 - L3 LINE CR1 -7 1570 1406 186 43 0 0 chr15 29567175 29567198 -56128556 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 2106 108 24 0 chr15 29567966 29568254 -56127500 + AluSg SINE Alu 1 295 -15 2019 130 0 3 chr15 29568420 29568705 -56127049 + AluSg1 SINE Alu 1 284 -25 198 0 0 0 chr15 29568705 29568727 -56127027 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2079 106 31 14 chr15 29568931 29569223 -56126531 + AluSx SINE Alu 1 297 -15 182 353 0 0 chr15 29569368 29569436 -56126318 - MIR SINE MIR -122 86 19 314 127 139 25 chr15 29570639 29570718 -56125036 - MIR SINE MIR -55 207 120 572 247 175 9 chr15 29571656 29571779 -56123975 - MIR SINE MIR -1 261 160 2477 75 0 10 chr15 29571779 29572087 -56123667 + AluY SINE Alu 1 305 -6 572 247 175 9 chr15 29572087 29572184 -56123570 - MIR SINE MIR -102 160 2 1679 175 7 29 chr15 29572504 29572813 -56122941 - AluJo SINE Alu -10 302 1 290 204 0 139 chr15 29573122 29573230 -56122524 + MIR SINE MIR 57 149 -113 1886 135 0 8 chr15 29573238 29573505 -56122249 + AluSx SINE Alu 34 298 -14 732 165 0 24 chr15 29573582 29573709 -56122045 + FLAM_C SINE Alu 17 140 -3 2115 136 0 13 chr15 29573753 29574061 -56121693 + AluSq SINE Alu 1 304 -9 1993 122 39 0 chr15 29574158 29574444 -56121310 + AluSg SINE Alu 1 297 -13 2617 56 0 0 chr15 29574444 29574746 -56121008 + AluY SINE Alu 1 302 -9 1979 169 0 0 chr15 29574754 29575062 -56120692 - AluSx SINE Alu -4 308 1 567 254 80 107 chr15 29575229 29575269 -56120485 + L1MC4a LINE L1 5670 5710 -2098 2261 98 3 0 chr15 29575269 29575598 -56120156 - AluSp SINE Alu 0 330 1 2345 94 0 3 chr15 29575604 29575902 -56119852 - AluSx SINE Alu -15 297 1 567 254 80 107 chr15 29575902 29576266 -56119488 + L1MC4a LINE L1 5715 6071 -1737 37 23 0 0 chr15 29576280 29576324 -56119430 + AT_rich Low_complexity Low_complexity 1 44 0 2027 148 0 0 chr15 29576733 29577031 -56118723 - AluJb SINE Alu -14 298 1 205 182 11 80 chr15 29577421 29577509 -56118245 + A-rich Low_complexity Low_complexity 3 84 0 1915 139 7 13 chr15 29578619 29578920 -56116834 + AluJb SINE Alu 1 299 -13 308 201 120 19 chr15 29578958 29579062 -56116692 - L1MA10 LINE L1 -4 6158 6049 2143 139 0 0 chr15 29580177 29580480 -56115274 - AluSx SINE Alu -9 303 1 2122 98 0 21 chr15 29580729 29581015 -56114739 + AluSx SINE Alu 1 280 -32 358 282 188 0 chr15 29581262 29581432 -56114322 - L3 LINE CR1 -63 1514 1313 215 143 41 0 chr15 29581571 29581620 -56114134 + (CATA)n Simple_repeat Simple_repeat 4 54 0 2190 103 0 35 chr15 29581880 29582191 -56113563 + AluSx SINE Alu 1 300 -12 21 82 0 0 chr15 29582842 29582891 -56112863 + AT_rich Low_complexity Low_complexity 1 49 0 2041 107 37 23 chr15 29583071 29583370 -56112384 + AluSx SINE Alu 1 303 -9 2281 106 0 20 chr15 29583888 29584191 -56111563 + AluSx SINE Alu 1 297 -15 2176 92 14 3 chr15 29584567 29584851 -56110903 + AluSx SINE Alu 1 287 -25 2313 75 7 0 chr15 29584865 29585159 -56110595 + AluY SINE Alu 1 296 -15 404 81 23 105 chr15 29585179 29585265 -56110489 + AluSg/x SINE Alu 217 295 -17 191 260 78 73 chr15 29585551 29585748 -56110006 - MIR SINE MIR -33 229 30 219 239 23 11 chr15 29586071 29586159 -56109595 + (CCG)n Simple_repeat Simple_repeat 1 89 0 1320 234 70 0 chr15 29587008 29587307 -56108447 + Charlie1 DNA MER1_type 1 320 -2441 1122 185 33 65 chr15 29587514 29587790 -56107964 + LTR43 LTR ERV1 195 461 -141 4196 174 156 104 chr15 29587879 29588112 -56107642 + Charlie1 DNA MER1_type 307 527 -2234 2267 93 14 0 chr15 29588112 29588402 -56107352 - AluSx SINE Alu -18 294 1 4196 174 156 104 chr15 29588402 29588429 -56107325 + Charlie1 DNA MER1_type 527 551 -2210 2228 108 0 3 chr15 29588429 29588735 -56107019 - AluSg SINE Alu -5 305 1 4196 174 156 104 chr15 29588735 29588756 -56106998 + Charlie1 DNA MER1_type 551 569 -2192 2148 108 7 20 chr15 29588756 29588891 -56106863 + AluSx SINE Alu 3 138 -174 1964 115 30 7 chr15 29588891 29589186 -56106568 + AluSg SINE Alu 1 302 -8 2148 108 7 20 chr15 29589186 29589345 -56106409 + AluSx SINE Alu 138 293 -19 4196 174 156 104 chr15 29589345 29589967 -56105787 + Charlie1 DNA MER1_type 569 1158 -1603 2095 122 7 23 chr15 29589967 29590270 -56105484 + AluSx SINE Alu 1 298 -14 4196 174 156 104 chr15 29590270 29590694 -56105060 + Charlie1 DNA MER1_type 1158 1559 -1202 2431 91 3 0 chr15 29590694 29591003 -56104751 + AluSq SINE Alu 1 310 -3 4196 174 156 104 chr15 29591003 29591080 -56104674 + Charlie1 DNA MER1_type 1559 1631 -1130 2344 84 0 3 chr15 29591080 29591379 -56104375 + AluY SINE Alu 1 298 -13 2651 42 3 0 chr15 29591379 29591688 -56104066 + AluY SINE Alu 1 310 -1 4196 174 156 104 chr15 29591688 29591780 -56103974 + Charlie1 DNA MER1_type 1630 1887 -874 1132 173 97 59 chr15 29591780 29592274 -56103480 - MER34B LTR ERV1 0 565 1 * 1413 194 39 0 chr15 29592274 29592555 -56103199 + Charlie1 DNA MER1_type 1886 2177 -584 2242 124 87 3 chr15 29592562 29592917 -56102837 - LTR26B LTR ERV1 0 531 147 1037 121 0 34 chr15 29592929 29593078 -56102676 + AluSq/x SINE Alu 1 144 -169 2411 90 10 0 chr15 29593078 29593378 -56102376 + AluSx SINE Alu 1 303 -9 1203 112 0 0 chr15 29593380 29593549 -56102205 - LTR26B LTR ERV1 -362 169 1 1160 176 105 40 chr15 29593559 29593757 -56101997 + Charlie1 DNA MER1_type 2195 2424 -337 1665 209 118 32 chr15 29593757 29594222 -56101532 + MLT1D LTR MaLR 1 505 0 1160 176 105 40 chr15 29594222 29594346 -56101408 + Charlie1 DNA MER1_type 2424 2538 -223 431 228 13 0 chr15 29594458 29594537 -56101217 - MER2 DNA MER2_type -264 81 2 697 193 25 97 chr15 29594537 29594606 -56101148 + Charlie1 DNA MER1_type 2540 2612 -149 2046 127 23 3 chr15 29594606 29594906 -56100848 - AluSq SINE Alu -7 306 1 697 193 25 97 chr15 29594906 29595074 -56100680 + Charlie1 DNA MER1_type 2612 2760 -1 303 357 13 26 chr15 29595513 29595667 -56100087 - MIR3 SINE MIR -6 202 51 2157 130 0 7 chr15 29596012 29596320 -56099434 + AluSx SINE Alu 1 306 -6 2347 91 7 0 chr15 29596328 29596637 -56099117 + AluSp SINE Alu 1 311 -2 210 367 37 55 chr15 29597762 29597788 -56097966 + L2 LINE L2 2825 2850 -422 2291 103 0 10 chr15 29597788 29598100 -56097654 - AluSq SINE Alu -4 309 1 2340 104 3 0 chr15 29598100 29598398 -56097356 - AluSx SINE Alu -13 299 1 210 367 37 55 chr15 29598398 29598588 -56097166 + L2 LINE L2 2848 3038 -234 315 193 42 84 chr15 29598754 29598873 -56096881 + L1ME4a LINE L1 5836 5949 -172 382 228 73 37 chr15 29598901 29599037 -56096717 + L2 LINE L2 3161 3301 -12 426 255 43 12 chr15 29599047 29599208 -56096546 + L1ME4a LINE L1 5956 6121 0 2490 57 7 3 chr15 29599466 29599763 -56095991 - AluY SINE Alu -13 298 1 7182 114 23 39 chr15 29599927 29601335 -56094419 - THE1B-int LTR MaLR -322 1329 1 2221 113 51 25 chr15 29601335 29601690 -56094064 - THE1B LTR MaLR 0 364 1 235 258 135 11 chr15 29601690 29601779 -56093975 - L2 LINE L2 -2 3270 3171 1034 124 0 0 chr15 29601784 29601944 -56093810 - AluSg/x SINE Alu 0 305 146 2406 98 3 0 chr15 29601951 29602256 -56093498 - AluSq SINE Alu -7 306 1 1436 115 99 12 chr15 29602308 29602560 -56093194 - LTR65 LTR ERV1 -5 664 391 889 279 60 28 chr15 29602560 29603120 -56092634 + L1MEc LINE L1 1689 2269 -4127 1855 153 3 20 chr15 29603120 29603421 -56092333 + AluJo SINE Alu 1 296 -16 4362 204 71 40 chr15 29603427 29603764 -56091990 - L1M4 LINE L1 -2255 3891 3566 862 165 0 0 chr15 29603764 29603897 -56091857 - FLAM_C SINE Alu 0 133 1 4362 204 71 40 chr15 29603897 29604319 -56091435 - L1M4 LINE L1 -2580 3566 3159 2471 68 3 0 chr15 29604319 29604613 -56091141 - AluY SINE Alu -14 297 3 4362 204 71 40 chr15 29604613 29604670 -56091084 - L1M4 LINE L1 -2987 3159 3105 2148 100 0 37 chr15 29604670 29604970 -56090784 - AluSg SINE Alu -20 290 2 1991 141 6 10 chr15 29604973 29605285 -56090469 - AluSq SINE Alu -2 311 1 4362 204 71 40 chr15 29605285 29605823 -56089931 - L1M4 LINE L1 -3042 3104 2489 2103 119 11 0 chr15 29605838 29606123 -56089631 - AluSx SINE Alu -23 289 2 261 57 0 0 chr15 29606139 29606174 -56089580 + (T)n Simple_repeat Simple_repeat 1 35 0 4253 187 40 57 chr15 29606183 29606308 -56089446 + L1MB8 LINE L1 4490 4616 -1562 1459 223 3 26 chr15 29606308 29606617 -56089137 + AluJo SINE Alu 1 302 -10 4253 187 40 57 chr15 29606617 29607037 -56088717 + L1MB8 LINE L1 4616 5042 -1136 2467 67 3 7 chr15 29607037 29607337 -56088417 + AluY SINE Alu 1 299 -12 4253 187 40 57 chr15 29607337 29608509 -56087245 + L1MB8 LINE L1 5042 6177 -1 2432 81 0 0 chr15 29608984 29609282 -56086472 - AluSc SINE Alu -11 298 1 1798 129 116 6 chr15 29610256 29610567 -56085187 - MER47A DNA MER2_type -2 364 20 298 208 0 0 chr15 29610890 29610943 -56084811 - MER7A DNA MER2_type 0 346 294 2009 133 6 47 chr15 29610944 29611266 -56084488 - MER1B DNA MER1_type 0 339 31 1637 144 23 52 chr15 29611274 29611329 -56084425 - MER7A DNA MER2_type -2743 295 240 2356 61 4 0 chr15 29611329 29611647 -56084107 + AluY SINE Alu 1 319 0 1637 144 23 52 chr15 29611647 29611871 -56083883 - MER7A DNA MER2_type -2798 240 24 2534 72 3 0 chr15 29611871 29612178 -56083576 + AluSp SINE Alu 1 308 -5 1637 144 23 52 chr15 29612178 29612202 -56083552 - MER7A DNA MER2_type -3014 24 1 199 250 45 57 chr15 29612705 29612793 -56082961 + MIR SINE MIR 103 189 -73 540 266 145 25 chr15 29612901 29613142 -56082612 + LTR33 LTR ERVL 2 271 -250 1562 157 93 11 chr15 29613158 29613426 -56082328 - AluJo SINE Alu -11 301 12 858 234 6 0 chr15 29613463 29613630 -56082124 + MER5A DNA MER1_type 21 188 -1 333 239 37 18 chr15 29613662 29613771 -56081983 + LTR33 LTR ERVL 370 480 -41 2448 97 3 0 chr15 29614686 29614995 -56080759 - AluSx SINE Alu -2 310 1 24 0 0 0 chr15 29615123 29615147 -56080607 + AT_rich Low_complexity Low_complexity 1 24 0 374 0 22 0 chr15 29615160 29615206 -56080548 + (CA)n Simple_repeat Simple_repeat 1 47 0 239 128 0 0 chr15 29615451 29615490 -56080264 + MIR SINE MIR 74 112 -150 370 306 101 5 chr15 29615585 29615784 -56079970 - MIR SINE MIR -15 247 30 255 290 232 5 chr15 29615841 29616065 -56079689 - L3 LINE CR1 -206 1371 1097 1139 195 178 10 chr15 29616086 29616384 -56079370 - L1ME3A LINE L1 -15 6155 5808 2525 140 7 5 chr15 29616394 29616808 -56078946 - L1MB3 LINE L1 0 6183 5769 2261 97 0 20 chr15 29616819 29617118 -56078636 - AluSx SINE Alu -15 297 5 342 245 29 0 chr15 29617380 29617482 -56078272 + MIR3 SINE MIR 101 205 -3 1955 112 45 0 chr15 29618174 29618478 -56077276 - AluSx SINE Alu 0 316 1 2281 93 33 3 chr15 29618740 29619040 -56076714 - AluSc SINE Alu 0 309 1 5286 78 38 28 chr15 29619150 29619563 -56076191 + MER4E LTR ERV1 1 427 -339 2536 74 3 3 chr15 29619563 29619873 -56075881 - AluSp SINE Alu -3 310 1 5286 78 38 28 chr15 29619873 29620217 -56075537 + MER4E LTR ERV1 427 766 0 4990 124 15 58 chr15 29620217 29621064 -56074690 + MER4E-int LTR ERV1 1 811 -5947 1944 205 38 23 chr15 29622969 29623470 -56072284 + MER89-int LTR ERV1 129 585 -4062 380 304 57 58 chr15 29623866 29624481 -56071273 + MER89-int LTR ERV1 3118 3731 -3070 5651 57 19 27 chr15 29627176 29627760 -56067994 + MER4E LTR ERV1 2 581 -185 2180 107 4 0 chr15 29627760 29628063 -56067691 - AluSx SINE Alu 0 304 1 5651 57 19 27 chr15 29628063 29628248 -56067506 + MER4E LTR ERV1 581 766 0 28 48 0 0 chr15 29628322 29628364 -56067390 + AT_rich Low_complexity Low_complexity 1 42 0 262 348 30 30 chr15 29629399 29629563 -56066191 + MIR SINE MIR 49 212 -50 373 327 71 0 chr15 29629597 29629710 -56066044 - MIR3 SINE MIR -45 163 43 206 271 29 57 chr15 29630297 29630367 -56065387 + L3 LINE CR1 1503 1570 -7 2305 97 13 0 chr15 29630528 29630836 -56064918 + AluSx SINE Alu 1 312 0 2131 150 19 11 chr15 29632036 29632395 -56063359 - MLT1A1 LTR MaLR 0 365 4 692 220 82 69 chr15 29632638 29632870 -56062884 - L2 LINE L2 -5 3308 3074 1205 144 0 11 chr15 29632938 29633118 -56062636 + FRAM SINE Alu 1 170 -6 896 249 42 117 chr15 29633155 29633612 -56062142 - MLT1G LTR MaLR -131 437 1 1507 268 62 72 chr15 29633620 29634379 -56061375 - L2 LINE L2 -261 3052 2303 675 280 119 19 chr15 29634570 29634806 -56060948 + MIR SINE MIR 3 261 -1 813 269 113 45 chr15 29635415 29635484 -56060270 - L2 LINE L2 -1975 1339 1276 2203 100 0 19 chr15 29635484 29635793 -56059961 + AluSx SINE Alu 1 303 -9 813 269 113 45 chr15 29635793 29636120 -56059634 - L2 LINE L2 -2038 1276 916 2158 92 11 3 chr15 29636138 29636420 -56059334 - AluSc SINE Alu -2 307 24 319 295 125 30 chr15 29637608 29637808 -56057946 + MIR SINE MIR 2 220 -42 2591 72 0 0 chr15 29638544 29638851 -56056903 + AluY SINE Alu 1 307 -4 723 87 0 0 chr15 29638853 29638957 -56056797 + (TA)n Simple_repeat Simple_repeat 1 104 0 225 0 0 0 chr15 29638956 29638981 -56056773 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 2248 104 0 7 chr15 29640354 29640661 -56055093 + AluSx SINE Alu 1 305 -7 753 154 43 0 chr15 29640883 29641000 -56054754 + FLAM_A SINE Alu 1 122 -11 255 93 0 0 chr15 29641312 29641355 -56054399 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 2172 100 0 4 chr15 29641355 29641636 -56054118 - AluSx SINE Alu -32 280 1 1064 184 11 0 chr15 29641638 29641823 -56053931 - AluSg/x SINE Alu 0 312 126 2079 83 4 0 chr15 29641862 29642114 -56053640 + AluSp SINE Alu 1 253 -60 1569 145 44 98 chr15 29642163 29642549 -56053205 + MLT1A1 LTR MaLR 1 365 0 343 295 11 0 chr15 29642619 29642714 -56053040 + L1MEd LINE L1 80 175 -5944 386 346 45 39 chr15 29642748 29642927 -56052827 - MER91A DNA MER1_type -16 180 1 2588 151 31 19 chr15 29643064 29643547 -56052207 + L1MB3 LINE L1 5685 6173 -10 2267 103 0 3 chr15 29643549 29643851 -56051903 - AluSg SINE Alu -9 301 1 29 47 0 0 chr15 29643856 29643899 -56051855 + AT_rich Low_complexity Low_complexity 1 43 0 284 222 22 22 chr15 29644228 29644318 -56051436 + L1MEd LINE L1 636 725 -5394 1051 296 94 19 chr15 29644348 29644818 -56050936 + LTR33 LTR ERVL 9 513 -8 425 266 98 80 chr15 29644850 29644965 -56050789 + L1MEd LINE L1 993 1104 -1386 2200 112 3 0 chr15 29644965 29645259 -56050495 - AluSq SINE Alu -18 295 1 425 266 98 80 chr15 29645259 29645293 -56050461 + L1MEd LINE L1 1104 1136 -1354 1776 141 36 36 chr15 29645293 29645598 -56050156 + AluJb SINE Alu 1 305 -7 425 266 98 80 chr15 29645598 29645774 -56049980 + L1MEd LINE L1 1136 1322 -1168 1583 195 122 3 chr15 29645775 29646159 -56049595 - MER63B DNA MER1_type -6 430 1 3747 237 48 20 chr15 29646315 29647540 -56048214 + L1M4 LINE L1 3144 4403 -1743 1778 112 0 8 chr15 29647567 29647816 -56047938 - AluSq SINE Alu 0 313 67 1838 194 72 16 chr15 29647820 29648206 -56047548 + MLT2B1 LTR ERVL 63 470 -50 1568 220 3 0 chr15 29648221 29648553 -56047201 + MLT-int LTR MaLR 1 333 -1402 5775 142 10 36 chr15 29648556 29649660 -56046094 - L1PB2 LINE L1 -3 6148 5017 2382 64 0 0 chr15 29649660 29649963 -56045791 - AluY SINE Alu 0 303 1 5775 142 10 36 chr15 29649963 29650570 -56045184 - L1PB2 LINE L1 -1134 5017 4493 2063 98 8 0 chr15 29650570 29650836 -56044918 - AluSq SINE Alu -45 268 1 5775 142 10 36 chr15 29650836 29650932 -56044822 - L1PB2 LINE L1 -1658 4493 4396 1412 116 0 20 chr15 29650939 29651177 -56044577 - AluSg/x SINE Alu 0 321 88 4104 177 15 47 chr15 29651177 29651722 -56044032 - L1PB2 LINE L1 -1729 4417 3919 2182 107 31 0 chr15 29651722 29652012 -56043742 - AluSx SINE Alu -13 299 1 4104 177 15 47 chr15 29652012 29652481 -56043273 - L1PB2 LINE L1 -2227 3919 3436 527 221 0 0 chr15 29652482 29652586 -56043168 + MLT-int LTR MaLR 320 423 -1312 2172 129 0 0 chr15 29652599 29652901 -56042853 + AluSx SINE Alu 11 312 0 250 62 62 21 chr15 29652912 29652960 -56042794 + GA-rich Low_complexity Low_complexity 5 54 0 2012 115 10 23 chr15 29652985 29653289 -56042465 - AluSq SINE Alu -13 300 1 1231 212 7 33 chr15 29653289 29653595 -56042159 + MLT1A1-int LTR MaLR 435 732 -639 2333 73 3 16 chr15 29653604 29653919 -56041835 + AluY SINE Alu 1 311 0 234 132 0 0 chr15 29653923 29653961 -56041793 + MLT1A1-int LTR MaLR 819 856 -515 2072 216 30 17 chr15 29654251 29654719 -56041035 + MLT1A1-int LTR MaLR 1262 1735 0 1732 175 8 38 chr15 29654719 29655084 -56040670 + MLT1A1 LTR MaLR 1 354 -11 5154 185 47 24 chr15 29655089 29655417 -56040337 + L1MC1 LINE L1 4415 4734 -1599 2418 77 7 0 chr15 29655417 29655715 -56040039 + AluSx SINE Alu 1 300 -12 5154 185 47 24 chr15 29655715 29656119 -56039635 + L1MC1 LINE L1 4734 5127 -1206 2116 125 0 3 chr15 29656119 29656404 -56039350 + AluSx SINE Alu 1 286 -26 230 0 0 32 chr15 29656404 29656435 -56039319 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 5154 185 47 24 chr15 29656445 29657137 -56038617 + L1MC1 LINE L1 5127 5890 -443 9191 97 11 9 chr15 29657137 29658421 -56037333 + HSMAR1 DNA Mariner 1 1287 0 5154 185 47 24 chr15 29658421 29658785 -56036969 + L1MC1 LINE L1 5890 6244 -89 2289 114 0 0 chr15 29658806 29659103 -56036651 - AluSq SINE Alu -16 297 1 423 0 0 0 chr15 29659154 29659201 -56036553 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 364 259 6 82 chr15 29659314 29659375 -56036379 + L1MC4 LINE L1 6952 7016 -1026 1836 162 10 7 chr15 29659375 29659678 -56036076 + AluJb SINE Alu 1 304 -8 364 259 6 82 chr15 29659678 29659774 -56035980 + L1MC4 LINE L1 7016 7097 -945 569 223 54 22 chr15 29659814 29660038 -56035716 + L1MC5 LINE L1 6993 7223 -738 245 314 33 33 chr15 29660062 29660215 -56035539 + L1MC4a LINE L1 7244 7396 -412 1990 127 40 0 chr15 29660390 29660690 -56035064 - AluSx SINE Alu 0 312 1 229 261 0 22 chr15 29660700 29660792 -56034962 - L1MC4 LINE L1 -1339 6703 6614 240 167 0 0 chr15 29660792 29660840 -56034914 + (TA)n Simple_repeat Simple_repeat 2 49 0 242 267 12 0 chr15 29660843 29660929 -56034825 + L1MC4 LINE L1 6615 6701 -1341 230 264 23 0 chr15 29660890 29660977 -56034777 - L1MC4 LINE L1 -1340 6702 6614 * 306 245 0 82 chr15 29660993 29661091 -56034663 + L1MC4 LINE L1 6614 6703 -1339 240 234 130 0 chr15 29661130 29661207 -56034547 - L1MC4 LINE L1 -1342 6700 6614 * 263 181 83 0 chr15 29661138 29661210 -56034544 + L1MC4 LINE L1 6615 6692 -1350 226 167 48 0 chr15 29661244 29661286 -56034468 + MER20 DNA MER1_type 1 44 -175 489 254 105 49 chr15 29661377 29661655 -56034099 + L1MC5 LINE L1 7501 7809 -152 2234 121 0 0 chr15 29661655 29661952 -56033802 + AluSx SINE Alu 1 297 -15 489 254 105 49 chr15 29661952 29662063 -56033691 + L1MC5 LINE L1 7809 7912 -49 2445 25 0 7 chr15 29662095 29662375 -56033379 + AluY SINE Alu 22 299 -12 1559 185 35 78 chr15 29663129 29663223 -56032531 + MLT1C LTR MaLR 1 98 -369 1701 94 75 130 chr15 29663223 29663554 -56032200 + AluSp SINE Alu 1 313 0 1559 185 35 78 chr15 29663554 29663772 -56031982 + MLT1C LTR MaLR 98 287 -180 2179 115 7 0 chr15 29663772 29664077 -56031677 + AluSx SINE Alu 2 308 -4 1559 185 35 78 chr15 29664077 29664250 -56031504 + MLT1C LTR MaLR 287 466 -1 2325 88 0 3 chr15 29664559 29664855 -56030899 - AluSc SINE Alu -8 301 7 356 148 0 0 chr15 29664865 29664919 -56030835 - MER5B DNA MER1_type -124 54 1 2244 94 0 29 chr15 29664923 29665232 -56030522 + AluSx SINE Alu 1 300 -12 1942 95 7 3 chr15 29665400 29665683 -56030071 - L1PB2 LINE L1 -3 6148 5865 313 306 110 58 chr15 29665965 29666138 -56029616 + MIR SINE MIR 10 191 -71 2333 91 7 0 chr15 29666406 29666703 -56029051 + AluSq SINE Alu 1 299 -14 332 247 105 40 chr15 29666733 29666980 -56028774 + L1ME4a LINE L1 5855 6117 -4 1951 154 3 3 chr15 29667060 29667346 -56028408 + AluJb SINE Alu 3 288 -24 1202 316 116 30 chr15 29667473 29667938 -56027816 + L3 LINE CR1 117 650 -927 2381 93 0 3 chr15 29667938 29668239 -56027515 - AluSg SINE Alu -10 300 1 1202 316 116 30 chr15 29668239 29668396 -56027358 + L3 LINE CR1 650 792 -785 237 247 130 0 chr15 29668410 29668487 -56027267 + L3 LINE CR1 1329 1415 -162 298 274 57 8 chr15 29668863 29668987 -56026767 - LTR67 LTR ERVL -3 554 425 249 209 0 0 chr15 29669985 29670052 -56025702 + (TA)n Simple_repeat Simple_repeat 2 68 0 383 275 55 0 chr15 29670185 29670327 -56025427 - L1ME LINE L1 -540 5581 5434 1077 166 50 55 chr15 29670463 29670782 -56024972 + MER33 DNA MER1_type 1 308 -16 262 220 85 0 chr15 29670956 29671015 -56024739 - MER91B DNA MER1_type -126 64 1 22 0 0 0 chr15 29671094 29671116 -56024638 + AT_rich Low_complexity Low_complexity 1 22 0 367 273 153 88 chr15 29672469 29672901 -56022853 - L1MDa LINE L1 -4480 2060 1601 1256 121 0 0 chr15 29873667 29873841 -55821913 - AluSq SINE Alu -3 310 137 1972 124 39 0 chr15 29873864 29874147 -55821607 + AluSq SINE Alu 1 294 -19 613 122 0 0 chr15 29874180 29874270 -55821484 + AluJ/FLAM SINE Alu 7 96 -216 * 711 183 8 15 chr15 29874265 29874396 -55821358 + FLAM_C SINE Alu 7 136 -7 319 328 57 26 chr15 29874452 29874681 -55821073 + MIR SINE MIR 1 236 -26 216 0 0 0 chr15 29874878 29874902 -55820852 + (T)n Simple_repeat Simple_repeat 1 24 0 1403 160 5 0 chr15 29874919 29875131 -55820623 - AluSx SINE Alu -77 235 23 2277 104 7 0 chr15 29875138 29875437 -55820317 - AluSp SINE Alu -11 302 2 2382 82 0 0 chr15 29876589 29876882 -55818872 - AluY SINE Alu -18 293 1 828 86 0 132 chr15 29877119 29877271 -55818483 + AluSq/x SINE Alu 3 134 -178 3235 129 168 22 chr15 29877388 29877912 -55817842 - L1MB7 LINE L1 -165 6019 5350 2267 108 0 10 chr15 29877912 29878217 -55817537 - AluSx SINE Alu -10 302 1 3235 129 168 22 chr15 29878217 29878427 -55817327 - L1MB7 LINE L1 -834 5350 5172 534 31 0 0 chr15 29878431 29878495 -55817259 + (ATTG)n Simple_repeat Simple_repeat 2 65 0 1072 197 0 0 chr15 29878495 29878673 -55817081 - AluSg/x SINE Alu -26 284 107 263 229 72 0 chr15 29878752 29878835 -55816919 + (TTGGGG)n Simple_repeat Simple_repeat 5 93 0 801 181 154 36 chr15 29879255 29879326 -55816428 - L1MB7 LINE L1 -1062 5084 5023 2255 90 0 0 chr15 29879326 29879604 -55816150 + AluSx SINE Alu 2 279 -33 801 181 154 36 chr15 29879604 29879753 -55816001 - L1MB7 LINE L1 -1123 5023 4838 632 242 33 13 chr15 29879760 29879913 -55815841 - MLT1F1 LTR MaLR -399 168 13 332 171 26 0 chr15 29879952 29880028 -55815726 + (CATA)n Simple_repeat Simple_repeat 3 80 0 1272 201 31 24 chr15 29880029 29880322 -55815432 - AluSq SINE Alu -18 295 1 1841 163 10 3 chr15 29880368 29880662 -55815092 + AluJb SINE Alu 1 296 -16 183 42 0 0 chr15 29880753 29880777 -55814977 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1955 130 4 0 chr15 29880781 29881057 -55814697 - AluSx SINE Alu -35 277 1 2358 252 159 30 chr15 29881443 29882730 -55813024 + L2 LINE L2 1524 2977 -337 1353 147 15 0 chr15 29882823 29883020 -55812734 - AluSg/x SINE Alu -47 265 66 522 212 134 37 chr15 29883034 29883251 -55812503 + L2 LINE L2 3076 3313 0 379 123 0 0 chr15 29883281 29883338 -55812416 - Alu SINE Alu -2 300 244 314 297 36 36 chr15 29883468 29883606 -55812148 - MIR3 SINE MIR -49 159 22 604 194 60 45 chr15 29884538 29884672 -55811082 - FLAM_C SINE Alu -6 137 2 810 139 0 0 chr15 29885359 29885467 -55810287 + FRAM SINE Alu 21 128 -48 200 360 0 11 chr15 29886132 29886221 -55809533 - MIR SINE MIR -114 148 61 232 143 0 0 chr15 29886257 29886292 -55809462 - Alu SINE Alu -265 35 1 1030 158 49 0 chr15 29886865 29887029 -55808725 + AluSg/x SINE Alu 118 289 -21 1458 108 205 46 chr15 29887315 29887574 -55808180 - AluSx SINE Alu -12 300 1 483 223 8 39 chr15 29888139 29888269 -55807485 + AluSg/x SINE Alu 172 297 -15 214 254 18 0 chr15 29888363 29888418 -55807336 + MER5B DNA MER1_type 122 177 -1 1759 144 31 14 chr15 29888562 29888853 -55806901 - AluSx SINE Alu -16 296 1 222 109 141 62 chr15 29889285 29889349 -55806405 + L2 LINE L2 3203 3271 -1 28 48 0 0 chr15 29891183 29891225 -55804529 + AT_rich Low_complexity Low_complexity 1 42 0 270 0 0 0 chr15 29892253 29892283 -55803471 + (TG)n Simple_repeat Simple_repeat 2 31 0 688 171 18 0 chr15 29892937 29893048 -55802706 - FRAM SINE Alu -39 137 25 404 167 0 0 chr15 29893050 29893116 -55802638 - L1M4 LINE L1 -1273 4873 4808 262 214 71 41 chr15 29893110 29893138 -55802616 - L1M4 LINE L1 -3757 2389 2363 * 1528 168 23 74 chr15 29893138 29893447 -55802307 - AluJo SINE Alu -18 294 2 262 214 71 41 chr15 29893447 29893516 -55802238 - L1M4 LINE L1 -3783 2363 2289 437 302 83 16 chr15 29893570 29893762 -55801992 - L1ME LINE L1 -456 5708 5504 346 259 71 9 chr15 29894398 29894510 -55801244 + MIR3 SINE MIR 15 133 -75 538 321 67 18 chr15 29895357 29895581 -55800173 + MIR SINE MIR 2 236 -26 938 233 155 13 chr15 29895913 29896230 -55799524 + L2 LINE L2 2440 2801 -513 794 257 119 41 chr15 29896288 29896390 -55799364 + L2 LINE L2 2919 3012 -301 1910 60 34 0 chr15 29896390 29896623 -55799131 + AluY SINE Alu 64 304 -7 794 257 119 41 chr15 29896623 29896882 -55798872 + L2 LINE L2 3012 3308 -5 2147 109 21 0 chr15 29898024 29898308 -55797446 - AluSx SINE Alu -22 290 1 1409 151 49 99 chr15 29898328 29898632 -55797122 - AluJo SINE Alu -12 290 2 2148 74 10 30 chr15 29898640 29898936 -55796818 - AluY SINE Alu -21 290 1 960 164 0 13 chr15 29899146 29899298 -55796456 - AluSq/x SINE Alu -162 150 1 201 279 0 0 chr15 29899377 29899420 -55796334 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 2254 116 7 3 chr15 29899945 29900255 -55795499 + AluSq SINE Alu 1 311 -2 281 238 87 79 chr15 29900257 29900383 -55795371 - L1ME4a LINE L1 -16 6105 5979 258 279 163 26 chr15 29900475 29900881 -55794873 - L1MC4a LINE L1 -105 6016 5603 477 101 30 0 chr15 29901125 29901224 -55794530 + (TA)n Simple_repeat Simple_repeat 2 103 0 1974 69 80 15 chr15 29901233 29901495 -55794259 - AluSg SINE Alu -31 279 1 2086 141 0 0 chr15 29901732 29902023 -55793731 - AluSx SINE Alu -21 291 1 804 179 11 27 chr15 29902036 29902220 -55793534 - L1MB8 LINE L1 -3 6175 5995 600 352 34 6 chr15 29902626 29902953 -55792801 - L2 LINE L2 -1094 2220 1885 1397 368 3 26 chr15 29903048 29903358 -55792396 - AluY SINE Alu -8 303 1 404 281 143 17 chr15 29903363 29903601 -55792153 + L2 LINE L2 2838 3105 -167 388 219 90 39 chr15 29904577 29904755 -55790999 - L1ME4a LINE L1 -1 6120 5934 397 254 9 86 chr15 29904894 29905114 -55790640 + L2 LINE L2 3079 3281 -32 253 229 16 0 chr15 29905114 29905175 -55790579 - L1MC4a LINE L1 -580 7228 7167 324 183 0 0 chr15 29905919 29905979 -55789775 + MER53 DNA DNA 130 189 0 2137 120 3 3 chr15 29906069 29906360 -55789394 + AluSq SINE Alu 1 291 -22 695 226 106 10 chr15 29906447 29906646 -55789108 + L1MC5 LINE L1 6649 6866 -1095 438 241 8 15 chr15 29906680 29906813 -55788941 + L1MC5 LINE L1 7782 7913 -48 210 154 0 0 chr15 29906943 29906982 -55788772 + (TA)n Simple_repeat Simple_repeat 2 40 0 1899 117 4 0 chr15 29906984 29907241 -55788513 - AluSx SINE Alu -31 281 24 315 380 63 0 chr15 29907420 29907562 -55788192 + HAL1 LINE L1 1127 1277 -1230 218 291 11 34 chr15 29907562 29907741 -55788013 + GA-rich Low_complexity Low_complexity 3 177 0 2356 78 6 34 chr15 29908063 29908385 -55787369 + AluSp SINE Alu 1 313 0 2113 135 3 0 chr15 29909190 29909493 -55786261 - AluSx SINE Alu -8 304 1 2297 94 0 7 chr15 29910469 29910766 -55784988 + AluSp SINE Alu 1 295 -18 2267 85 27 0 chr15 29910771 29911065 -55784689 + AluSp SINE Alu 1 302 -11 347 261 42 25 chr15 29911290 29911450 -55784304 - MLT1J LTR MaLR -279 336 111 282 313 28 21 chr15 29911831 29911975 -55783779 + MIR SINE MIR 112 256 -6 3445 135 47 27 chr15 29912000 29912030 -55783724 + LTR26 LTR ERV1 1 29 -574 2276 86 0 0 chr15 29912030 29912338 -55783416 + AluY SINE Alu 1 308 0 3445 135 47 27 chr15 29912338 29912897 -55782857 + LTR26 LTR ERV1 29 603 0 301 281 151 69 chr15 29912902 29913219 -55782535 + MLT1K LTR MaLR 7 349 -239 393 214 0 0 chr15 29913514 29913584 -55782170 + MER8 DNA MER2_type 160 229 -10 283 270 32 24 chr15 29913681 29913807 -55781947 + L2 LINE L2 2004 2130 -1184 2125 119 24 0 chr15 29913870 29914163 -55781591 - AluSx SINE Alu -12 300 1 1064 272 176 26 chr15 29914187 29914966 -55780788 + L2 LINE L2 2346 3235 -78 4130 235 70 65 chr15 29915755 29916664 -55779090 + HAL1 LINE L1 656 1578 -929 656 55 44 0 chr15 29916664 29916755 -55778999 + L1PB1 LINE L1 6056 6150 -1 4130 235 70 65 chr15 29916755 29917553 -55778201 + HAL1 LINE L1 1578 2371 -136 1997 111 4 0 chr15 29917561 29917832 -55777922 + AluY SINE Alu 33 304 -7 243 272 33 11 chr15 29918190 29918282 -55777472 + MER5B DNA MER1_type 11 104 -74 2289 121 0 0 chr15 29918301 29918608 -55777146 - AluSx SINE Alu -5 307 1 1799 94 12 16 chr15 29918617 29918872 -55776882 - AluY SINE Alu -3 308 55 935 200 0 67 chr15 29918881 29919151 -55776603 - AluY SINE Alu -15 296 45 513 213 43 111 chr15 29920340 29920575 -55775179 - AluY SINE Alu -91 220 2 2032 123 0 66 chr15 29920649 29920981 -55774773 + AluSx SINE Alu 1 310 -2 193 235 78 0 chr15 29921903 29921954 -55773800 - MIR SINE MIR -4 258 204 229 273 0 0 chr15 29923167 29923222 -55772532 + L1MB7 LINE L1 5512 5566 -608 2975 180 55 2 chr15 29923758 29924340 -55771414 + L1MB7 LINE L1 5553 6165 -19 23 33 0 0 chr15 29924319 29924349 -55771405 + AT_rich Low_complexity Low_complexity 1 30 0 2199 125 0 3 chr15 29924387 29924690 -55771064 - AluSx SINE Alu -10 302 1 1789 113 132 0 chr15 29924732 29924998 -55770756 + AluSx SINE Alu 1 301 -1 332 136 136 0 chr15 29925829 29925888 -55769866 + L1MC4 LINE L1 6771 6837 -1205 * 422 171 57 26 chr15 29925887 29926017 -55769737 - L1MC4 LINE L1 -806 7036 6873 2317 36 0 4 chr15 29926946 29927266 -55768488 + AluY SINE Alu 1 319 0 196 315 0 0 chr15 29927740 29927794 -55767960 - MIR SINE MIR -63 145 92 611 241 49 38 chr15 29927893 29928159 -55767595 - AluSc SINE Alu -7 302 34 587 147 0 92 chr15 29929373 29929449 -55766305 - AluY SINE Alu -111 200 135 2108 107 0 3 chr15 29929449 29929747 -55766007 - AluSg SINE Alu -13 297 1 587 147 0 92 chr15 29929747 29929779 -55765975 - AluY SINE Alu -176 135 102 1685 184 19 0 chr15 29930053 29930368 -55765386 + MER73 LTR ERVL 324 644 0 1757 158 20 13 chr15 29930535 29930839 -55764915 + AluJb SINE Alu 1 306 -6 289 317 118 0 chr15 29930840 29931002 -55764752 + MIR SINE MIR 8 197 -65 983 92 0 0 chr15 29931184 29931314 -55764440 - AluSg SINE Alu -180 130 1 767 235 235 22 chr15 29931676 29931832 -55763922 + L2 LINE L2 1317 1438 -1876 939 189 44 84 chr15 29931832 29932081 -55763673 + MER8 DNA MER2_type 1 239 0 767 235 235 22 chr15 29932081 29932247 -55763507 + L2 LINE L2 1438 1708 -1606 1093 133 0 12 chr15 29932261 29932434 -55763320 + AluJo SINE Alu 1 171 -141 1575 151 4 11 chr15 29932749 29933027 -55762727 + AluSx SINE Alu 28 303 -9 235 210 0 32 chr15 29933027 29933089 -55762665 + L1MC5 LINE L1 7848 7907 -54 1058 246 47 19 chr15 29933098 29933419 -55762335 + L2 LINE L2 1698 2027 -1287 1650 132 0 83 chr15 29933770 29933940 -55761814 - AluJb SINE Alu -12 300 168 1783 148 10 3 chr15 29933940 29934231 -55761523 - AluJb SINE Alu -19 293 1 1650 132 0 83 chr15 29934231 29934387 -55761367 - AluJb SINE Alu -144 168 1 297 228 54 33 chr15 29934448 29934540 -55761214 - L2 LINE L2 -40 3232 3139 458 120 13 13 chr15 29934703 29934778 -55760976 - AluSg/x SINE Alu -30 282 208 574 117 0 0 chr15 29935109 29935186 -55760568 - AluSg/x SINE Alu -30 280 204 810 83 9 0 chr15 29935262 29935371 -55760383 + L1PA8A LINE L1 5994 6103 -28 2190 93 0 16 chr15 29935511 29935824 -55759930 + AluSx SINE Alu 1 308 -4 402 309 40 13 chr15 29937192 29937341 -55758413 - MLT1K LTR MaLR -418 170 18 873 110 39 0 chr15 29937483 29937610 -55758144 + AluJb SINE Alu 1 132 -180 836 193 20 0 chr15 29937678 29937828 -55757926 - AluSg/x SINE Alu -39 271 119 731 180 16 0 chr15 29937882 29938004 -55757750 - AluJb SINE Alu -187 125 2 1930 116 0 0 chr15 29938013 29938281 -55757473 - AluSx SINE Alu -24 288 21 454 318 127 45 chr15 29938685 29938706 -55757048 + L1MC4a LINE L1 5463 5481 -2327 1938 125 28 0 chr15 29938706 29938995 -55756759 + AluSx SINE Alu 1 297 -15 454 318 127 45 chr15 29938995 29939413 -55756341 + L1MC4a LINE L1 5481 5938 -1870 2102 110 3 0 chr15 29940815 29941107 -55754647 - AluSq SINE Alu -20 293 1 1822 109 42 0 chr15 29941429 29941548 -55754206 + AluSc SINE Alu 1 114 -195 405 0 0 0 chr15 29941548 29941593 -55754161 + (CA)n Simple_repeat Simple_repeat 2 46 0 1822 109 42 0 chr15 29941593 29941757 -55753997 + AluSc SINE Alu 114 296 -13 33 0 0 0 chr15 29943180 29943213 -55752541 + GC_rich Low_complexity Low_complexity 1 33 0 1911 57 0 8 chr15 29943354 29943601 -55752153 - AluY SINE Alu -66 245 1 422 143 4 0 chr15 29943604 29943679 -55752075 + LTR41 LTR ERVL 453 523 0 427 254 64 0 chr15 29943692 29943802 -55751952 + HERVL LTR ERVL 2854 2970 -2684 2041 173 9 6 chr15 29943806 29944152 -55751602 - MLT1A1 LTR MaLR 0 365 19 4459 264 68 6 chr15 29944161 29945355 -55750399 + HERVL LTR ERVL 3008 4275 -1489 596 204 46 0 chr15 29945392 29945544 -55750210 + LTR37A LTR ERV1 268 426 0 669 263 105 0 chr15 29945715 29945886 -55749868 + MIR SINE MIR 48 236 -26 2388 181 99 0 chr15 29946059 29946545 -55749209 - L1MB7 LINE L1 -2 6182 5649 1586 113 77 18 chr15 29946830 29946960 -55748794 - L1MA5 LINE L1 -4 6296 6175 2554 133 24 42 chr15 29946960 29947287 -55748467 + MER65A LTR ERV1 1 319 -126 2219 88 0 22 chr15 29947287 29947604 -55748150 - AluY SINE Alu -1 310 1 2554 133 24 42 chr15 29947604 29947729 -55748025 + MER65A LTR ERV1 319 445 0 1586 113 77 18 chr15 29947729 29947872 -55747882 - L1MA5 LINE L1 -125 6175 6007 1042 172 67 50 chr15 29948637 29948875 -55746879 + Charlie1 DNA MER1_type 1 242 -2519 736 133 15 52 chr15 29948867 29948961 -55746793 + Charlie1 DNA MER1_type 2631 2720 -41 * 2224 79 3 7 chr15 29948961 29949265 -55746489 + AluSp SINE Alu 1 303 -10 736 133 15 52 chr15 29949265 29949305 -55746449 + Charlie1 DNA MER1_type 2720 2760 -1 426 305 0 58 chr15 29949372 29949562 -55746192 + G-rich Low_complexity Low_complexity 1 179 0 305 258 0 43 chr15 29949569 29949694 -55746060 + G-rich Low_complexity Low_complexity 1 119 0 1986 82 27 14 chr15 29951388 29951680 -55744074 - AluY SINE Alu -15 296 1 277 252 36 108 chr15 29952640 29952732 -55743022 + MER110 LTR ERV1 363 443 -48 2164 110 0 0 chr15 29952732 29953031 -55742723 - AluSx SINE Alu -13 299 1 277 252 36 108 chr15 29953031 29953077 -55742677 + MER110 LTR ERV1 443 491 0 234 91 0 0 chr15 29953194 29953227 -55742527 + (A)n Simple_repeat Simple_repeat 1 33 0 376 279 121 55 chr15 29953351 29953516 -55742238 - L3 LINE CR1 -2 1575 1400 233 290 65 28 chr15 29953897 29954004 -55741750 - L2 LINE L2 0 3272 3162 294 280 0 40 chr15 29954198 29954298 -55741456 - L2 LINE L2 -240 3032 2937 2095 105 3 0 chr15 29954474 29954760 -55740994 - AluSx SINE Alu -14 298 12 514 249 226 20 chr15 29955512 29955914 -55739840 - L1ME4a LINE L1 0 6121 5637 2256 62 3 7 chr15 29955995 29956286 -55739468 - AluY SINE Alu -21 290 1 2107 100 7 10 chr15 29957378 29957679 -55738075 - AluSq SINE Alu -13 300 1 256 236 87 31 chr15 29957853 29957980 -55737774 - L1ME4a LINE L1 -2362 5423 5290 301 301 7 52 chr15 29958034 29958187 -55737567 - L1ME4a LINE L1 -889 5257 5112 456 281 148 36 chr15 29958263 29958566 -55737188 + L1ME4a LINE L1 5562 5898 -223 637 274 73 36 chr15 29959147 29959395 -55736359 + MIR SINE MIR 6 262 0 2218 114 0 0 chr15 29959527 29959834 -55735920 - AluSx SINE Alu -1 311 5 389 206 116 48 chr15 29960343 29960489 -55735265 + MER20 DNA MER1_type 63 218 -1 582 198 60 0 chr15 29960505 29960621 -55735133 + MLT1J LTR MaLR 71 193 -318 287 244 154 8 chr15 29961266 29961389 -55734365 - L2 LINE L2 -188 3084 2944 2137 113 0 0 chr15 29961408 29961708 -55734046 - AluSx SINE Alu -12 300 1 1554 144 29 122 chr15 29961734 29962110 -55733644 - MER2 DNA MER2_type -3 341 1 293 247 58 98 chr15 29962450 29962624 -55733130 + L2 LINE L2 2250 2416 -898 1192 217 44 20 chr15 29962629 29962924 -55732830 + LTR40b LTR ERVL 161 462 0 336 333 52 0 chr15 29962924 29963059 -55732695 + L2 LINE L2 2555 2696 -618 1256 152 68 27 chr15 29963060 29963323 -55732431 - AluJb SINE Alu 0 312 39 207 145 26 171 chr15 29963323 29963399 -55732355 + L2 LINE L2 2687 2751 -563 898 232 201 14 chr15 29963440 29963733 -55732021 + L2 LINE L2 2966 3313 0 217 321 66 0 chr15 29964602 29964708 -55731046 + MIR SINE MIR 30 142 -66 181 186 169 17 chr15 29965578 29965637 -55730117 - MIR SINE MIR -123 85 18 378 0 0 0 chr15 29966441 29966483 -55729271 + (CA)n Simple_repeat Simple_repeat 2 43 0 827 65 8 0 chr15 29966653 29966776 -55728978 + (CA)n Simple_repeat Simple_repeat 2 125 0 350 205 60 25 chr15 29967044 29967169 -55728585 - MER5A DNA MER1_type -53 125 4 247 296 70 43 chr15 29967287 29967402 -55728352 - L2 LINE L2 -9 3263 3146 1456 171 32 3 chr15 29967410 29967848 -55727906 + MER110 LTR ERV1 1 484 -7 241 177 65 0 chr15 29967932 29967994 -55727760 - L2 LINE L2 -241 3031 2966 197 288 68 0 chr15 29968086 29968145 -55727609 - L2 LINE L2 -567 2747 2685 1980 107 0 0 chr15 29968733 29969004 -55726750 + AluSx SINE Alu 29 299 -13 603 224 69 65 chr15 29969748 29969763 -55725991 - MIR SINE MIR 0 262 249 1603 161 0 47 chr15 29969763 29970088 -55725666 + AluJo SINE Alu 1 311 0 603 224 69 65 chr15 29970088 29970317 -55725437 - MIR SINE MIR -13 249 16 718 116 20 116 chr15 29972035 29972182 -55723572 - FLAM_C SINE Alu 0 133 1 2112 281 120 30 chr15 29972184 29973332 -55722422 - L1MC4 LINE L1 -7 8035 6785 2112 124 0 0 chr15 29973476 29973782 -55721972 + AluSx SINE Alu 1 306 -6 187 333 12 48 chr15 29974026 29974110 -55721644 + L2 LINE L2 3191 3271 -1 1520 253 61 74 chr15 29975108 29975683 -55720071 + MER77 LTR ERV1 60 601 -4 248 295 33 0 chr15 29975654 29975715 -55720039 + MER21B LTR ERV1 606 668 -195 * 23 54 0 0 chr15 29975807 29975844 -55719910 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr15 29975937 29975959 -55719795 + AT_rich Low_complexity Low_complexity 1 22 0 352 265 52 73 chr15 29975960 29976232 -55719522 + AluJb SINE Alu 1 266 -36 2398 52 0 10 chr15 29977180 29977485 -55718269 - AluY SINE Alu -9 302 1 364 154 7 13 chr15 29977533 29977605 -55718149 - MER110 LTR ERV1 -388 103 1 707 293 27 23 chr15 29977697 29977784 -55717970 - L1ME LINE L1 -302 5819 5734 1591 170 6 56 chr15 29977784 29978107 -55717647 - AluJb SINE Alu -3 309 3 707 293 27 23 chr15 29978107 29978319 -55717435 - L1ME LINE L1 -387 5734 5519 809 148 7 0 chr15 29978388 29978523 -55717231 - FLAM_A SINE Alu -1 141 6 2090 120 13 0 chr15 29978809 29979109 -55716645 - AluSx SINE Alu -8 304 1 199 327 20 50 chr15 29979653 29979754 -55716000 - MIR SINE MIR -68 140 43 233 290 43 11 chr15 29982072 29982165 -55713589 - MARNA DNA Mariner -211 375 280 822 204 80 6 chr15 29983038 29983214 -55712540 + AluJb SINE Alu 122 310 -2 2110 96 0 23 chr15 29983553 29983854 -55711900 - AluSx SINE Alu -18 294 1 1654 144 40 18 chr15 29983865 29984143 -55711611 - AluJb SINE Alu -17 295 12 1661 217 137 19 chr15 29984236 29984719 -55711035 + MLT1F LTR MaLR 1 540 -2 353 252 113 17 chr15 29985688 29985803 -55709951 - MIR SINE MIR -63 145 20 186 343 27 0 chr15 29986223 29986296 -55709458 - MIR3 SINE MIR -26 182 108 3139 226 139 12 chr15 29986658 29987589 -55708165 - L1MC4 LINE L1 -191 7851 6803 1710 149 6 50 chr15 29987679 29988000 -55707754 + AluJb SINE Alu 1 307 -5 2379 60 0 3 chr15 29988164 29988465 -55707289 - AluY SINE Alu -11 300 1 2096 106 3 0 chr15 29988480 29988773 -55706981 - AluSg SINE Alu -16 294 1 339 353 43 22 chr15 29989391 29989530 -55706224 + MIR SINE MIR 8 149 -113 187 298 21 0 chr15 29989587 29989634 -55706120 + L2 LINE L2 3266 3313 0 219 313 101 76 chr15 29990028 29990316 -55705438 - L2 LINE L2 -49 3223 2929 233 318 27 18 chr15 29990470 29990580 -55705174 - L2 LINE L2 -582 2732 2622 505 302 23 23 chr15 29990907 29991172 -55704582 - L1 LINE L1 -2015 4131 3867 1016 185 70 70 chr15 29991178 29991480 -55704274 - AluSx SINE Alu 0 302 1 190 298 124 41 chr15 29991735 29991856 -55703898 + MIR SINE MIR 98 228 -34 280 245 185 20 chr15 29992058 29992209 -55703545 - L1ME4a LINE L1 -11 6110 5935 297 253 60 0 chr15 29992286 29992369 -55703385 - L1ME4a LINE L1 -298 5823 5736 387 195 11 11 chr15 29992399 29992486 -55703268 - L1ME4a LINE L1 -458 5663 5577 362 219 171 11 chr15 29992486 29992628 -55703126 - MIR SINE MIR -5 257 83 834 244 0 30 chr15 29992983 29993213 -55702541 - AluSx SINE Alu -89 223 1 831 50 0 0 chr15 29994368 29994468 -55701286 + HY3 scRNA scRNA 1 100 -1 10509 228 31 29 chr15 29994509 29995553 -55700201 + L1PA11 LINE L1 7 1047 -6537 2087 102 0 22 chr15 29995553 29995868 -55699886 + AluSg SINE Alu 1 308 -2 2107 92 0 31 chr15 29995869 29996186 -55699568 + AluY SINE Alu 2 308 -3 10509 228 31 29 chr15 29996186 29998221 -55697533 + L1PA11 LINE L1 1046 4429 -3155 14035 128 40 6 chr15 29998321 29999012 -55696742 + L1PA11 LINE L1 4439 5104 -2508 2223 112 0 3 chr15 29999012 29999324 -55696430 + AluSq SINE Alu 1 311 -2 14035 128 40 6 chr15 29999324 30000666 -55695088 + L1PA11 LINE L1 5104 6542 -1070 1798 132 54 0 chr15 30000666 30000918 -55694836 + AluSq SINE Alu 1 273 -40 1979 98 0 4 chr15 30000918 30001193 -55694561 + AluSq SINE Alu 40 313 0 1798 132 54 0 chr15 30001193 30001236 -55694518 + AluSq SINE Alu 273 312 -1 14035 128 40 6 chr15 30001236 30002346 -55693408 + L1PA11 LINE L1 6542 7612 0 1799 133 44 0 chr15 30002448 30002741 -55693013 + AluSx SINE Alu 1 306 -6 280 269 118 54 chr15 30002752 30003083 -55692671 + L1ME4a LINE L1 5723 6074 -47 1559 162 56 40 chr15 30003751 30004053 -55691701 - AluJo SINE Alu -5 307 1 1722 125 55 4 chr15 30004123 30004395 -55691359 + AluJo SINE Alu 2 287 -25 781 269 88 72 chr15 30004639 30004879 -55690875 - L2 LINE L2 -1 3312 3077 769 118 17 8 chr15 30004879 30004998 -55690756 - FLAM_C SINE Alu -12 121 2 781 269 88 72 chr15 30004998 30005258 -55690496 - L2 LINE L2 -236 3077 2804 241 304 20 59 chr15 30005340 30005442 -55690312 + MIR SINE MIR 55 152 -56 1775 151 133 3 chr15 30005516 30005861 -55689893 + MLT1D LTR MaLR 1 390 -115 344 241 18 107 chr15 30006016 30006084 -55689670 + MER81 DNA DNA 13 70 -44 1784 134 33 0 chr15 30006084 30006384 -55689370 + AluSx SINE Alu 1 309 0 344 241 18 107 chr15 30006384 30006426 -55689328 + MER81 DNA DNA 70 114 0 573 71 0 24 chr15 30007403 30007488 -55688266 - AluSg1 SINE Alu -216 93 11 2051 123 23 0 chr15 30007541 30007842 -55687912 + AluSx SINE Alu 1 308 -4 460 225 71 6 chr15 30008325 30008460 -55687294 + MIR SINE MIR 21 165 -43 285 31 0 0 chr15 30008468 30008500 -55687254 - AluSq/x SINE Alu -196 107 76 * 417 261 140 76 chr15 30008498 30008807 -55686947 + MLT1J LTR MaLR 240 473 -38 212 227 0 0 chr15 30009834 30009878 -55685876 + (CCG)n Simple_repeat Simple_repeat 2 45 0 21 95 0 0 chr15 30010096 30010159 -55685595 + GC_rich Low_complexity Low_complexity 1 63 0 303 324 0 0 chr15 30010300 30010413 -55685341 - MIR SINE MIR -63 145 33 753 228 62 14 chr15 30010929 30011140 -55684614 - MIR SINE MIR -21 241 21 318 236 42 0 chr15 30011419 30011491 -55684263 + MIR SINE MIR 118 192 -70 2163 105 20 0 chr15 30011499 30011805 -55683949 + AluSx SINE Alu 1 312 0 231 200 17 67 chr15 30011950 30012010 -55683744 + L2 LINE L2 3216 3272 0 24 0 0 0 chr15 30012010 30012034 -55683720 + AT_rich Low_complexity Low_complexity 1 24 0 205 235 12 24 chr15 30012049 30012134 -55683620 + (TAAA)n Simple_repeat Simple_repeat 1 84 0 409 235 144 23 chr15 30012164 30012296 -55683458 + MIR SINE MIR 4 151 -111 1701 125 0 4 chr15 30013416 30013664 -55682090 + AluSx SINE Alu 1 247 -65 361 43 0 0 chr15 30013668 30013714 -55682040 - MADE1 DNA Mariner -34 46 1 677 291 57 29 chr15 30014725 30014969 -55680785 - MIR SINE MIR -10 252 2 425 230 213 23 chr15 30015814 30015988 -55679766 + MIR SINE MIR 8 214 -48 2214 136 27 54 chr15 30016288 30016398 -55679356 + LTR56 LTR ERV1 17 128 -309 396 0 0 0 chr15 30016398 30016442 -55679312 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1860 134 0 0 chr15 30016448 30016723 -55679031 - AluSx SINE Alu -37 275 1 2214 136 27 54 chr15 30016723 30017059 -55678695 + LTR56 LTR ERV1 133 431 -6 253 232 71 10 chr15 30018465 30018564 -55677190 - L1MC/D LINE L1 -2003 5805 5701 769 159 16 104 chr15 30018580 30018762 -55676992 + L1MC/D LINE L1 5511 5676 -508 1890 118 62 0 chr15 30018763 30019051 -55676703 + AluSx SINE Alu 1 306 -6 564 238 107 42 chr15 30019051 30019312 -55676442 - L2 LINE L2 -361 2953 2676 338 326 68 8 chr15 30019689 30019821 -55675933 - MIR SINE MIR -94 168 29 1603 183 25 82 chr15 30019924 30020354 -55675400 + L1MB7 LINE L1 5762 6167 -17 2327 80 0 0 chr15 30020354 30020653 -55675101 - AluY SINE Alu -12 299 1 1603 183 25 82 chr15 30020653 30020671 -55675083 + L1MB7 LINE L1 6167 6184 0 1279 231 106 60 chr15 30020667 30021187 -55674567 + L1ME3 LINE L1 5319 5862 -300 * 21 100 0 0 chr15 30021316 30021386 -55674368 + AT_rich Low_complexity Low_complexity 1 70 0 22 0 0 0 chr15 30023089 30023111 -55672643 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr15 30023177 30023219 -55672535 + AT_rich Low_complexity Low_complexity 1 42 0 2299 73 3 10 chr15 30023269 30023571 -55672183 + AluSc SINE Alu 1 300 -9 809 142 87 175 chr15 30024654 30025225 -55670529 - Charlie1 DNA MER1_type -4 2757 1 1608 138 17 54 chr15 30026047 30026345 -55669409 - AluJo SINE Alu -25 287 1 278 274 14 0 chr15 30026288 30026361 -55669393 - AluSg/x SINE Alu -109 193 120 284 188 113 25 chr15 30026825 30026905 -55668849 + MIR3 SINE MIR 120 206 -2 304 219 135 0 chr15 30027153 30027237 -55668517 + MIR SINE MIR 25 119 -89 3328 151 27 63 chr15 30027242 30027872 -55667882 + L1MB8 LINE L1 5504 6108 -70 1963 124 3 13 chr15 30027872 30028170 -55667584 - AluSx SINE Alu -17 295 1 3328 151 27 63 chr15 30028170 30028239 -55667515 + L1MB8 LINE L1 6108 6178 0 215 238 0 0 chr15 30028243 30028285 -55667469 + MIR3 SINE MIR 145 186 -22 2050 115 7 7 chr15 30028285 30028581 -55667173 + AluSq SINE Alu 1 296 -17 2128 112 0 0 chr15 30028787 30029114 -55666640 - AluSg SINE Alu 0 310 1 2262 69 3 7 chr15 30029123 30029428 -55666326 - AluY SINE Alu -7 304 1 313 365 71 62 chr15 30029562 30029885 -55665869 + L1MDa LINE L1 12 337 -6203 316 282 24 100 chr15 30030362 30030520 -55665234 + L1MDa LINE L1 906 1075 -5468 1849 123 11 0 chr15 30030520 30030781 -55664973 + AluSq SINE Alu 1 264 -49 207 0 0 0 chr15 30030783 30030806 -55664948 + (TAA)n Simple_repeat Simple_repeat 2 24 0 4798 208 64 34 chr15 30030820 30032323 -55663431 + L1MDa LINE L1 1012 2559 -3981 316 100 0 0 chr15 30032347 30032387 -55663367 + FLAM SINE Alu 85 124 -9 1662 101 0 4 chr15 30032401 30032629 -55663125 + AluSg/x SINE Alu 73 299 -13 3058 69 13 38 chr15 30033104 30033153 -55662601 - L1MA1 LINE L1 -4 6298 6249 1957 128 0 10 chr15 30033153 30033458 -55662296 - AluSx SINE Alu -10 302 1 3058 69 13 38 chr15 30033458 30033572 -55662182 - L1MA1 LINE L1 -53 6249 6134 2264 97 7 0 chr15 30033572 30033880 -55661874 - AluSx SINE Alu -2 310 1 3058 69 13 38 chr15 30033880 30034162 -55661592 - L1MA1 LINE L1 -168 6134 5863 182 303 119 46 chr15 30034714 30034823 -55660931 + L2 LINE L2 3154 3270 -2 376 278 85 80 chr15 30036498 30036614 -55659140 + L1MEd LINE L1 914 1028 -5344 1505 187 34 83 chr15 30036614 30037021 -55658733 + MLT1B LTR MaLR 1 387 -3 376 278 85 80 chr15 30037021 30037086 -55658668 + L1MEd LINE L1 1028 1091 -5281 2223 107 3 3 chr15 30037086 30037396 -55658358 + AluSx SINE Alu 1 310 -2 376 278 85 80 chr15 30037396 30037550 -55658204 + L1MEd LINE L1 1091 1281 -5091 897 260 163 7 chr15 30037834 30038291 -55657463 + L1ME LINE L1 5051 5576 -588 226 297 68 59 chr15 30038501 30038619 -55657135 - MIR3 SINE MIR -2 206 88 1905 156 0 0 chr15 30040203 30040498 -55655256 - AluJb SINE Alu -17 295 1 293 253 43 71 chr15 30041251 30041466 -55654288 + MLT1J LTR MaLR 201 470 -41 754 220 147 0 chr15 30043106 30043297 -55652457 + MER20 DNA MER1_type 1 219 0 638 126 19 3 chr15 30043912 30044028 -55651726 - MLT1D LTR MaLR 0 505 403 2006 159 27 22 chr15 30044983 30045392 -55650362 - L1MB7 LINE L1 0 6184 5774 1066 250 91 77 chr15 30045896 30046461 -55649293 - L1ME4a LINE L1 -78 6043 5466 1509 171 28 21 chr15 30046461 30046747 -55649007 - AluJo SINE Alu -24 288 1 1066 250 91 77 chr15 30046747 30046821 -55648933 - L1ME4a LINE L1 -655 5466 5395 1451 206 99 32 chr15 30046919 30047352 -55648402 + MLT1C LTR MaLR 6 467 0 180 0 0 0 chr15 30047733 30047753 -55648001 + (CAAGG)n Simple_repeat Simple_repeat 3 22 0 180 129 32 0 chr15 30049791 30049822 -55645932 - MER5A DNA MER1_type -128 61 30 1458 119 50 0 chr15 30050154 30050372 -55645382 + MER30 DNA MER1_type 2 230 0 864 214 69 62 chr15 30050401 30050581 -55645173 + MER102b DNA MER1_type 51 235 -1193 1563 176 0 56 chr15 30050581 30050771 -55644983 - AluJb SINE Alu -6 306 140 1846 134 10 26 chr15 30050771 30051076 -55644678 + AluSq SINE Alu 1 300 -13 1563 176 0 56 chr15 30051076 30051209 -55644545 - AluJb SINE Alu -172 140 1 864 214 69 62 chr15 30051209 30051317 -55644437 + MER102b DNA MER1_type 235 341 0 2514 124 0 16 chr15 30052098 30052470 -55643284 + MER47A DNA MER2_type 1 366 0 375 342 120 25 chr15 30052601 30053116 -55642638 - L2 LINE L2 -1178 2136 1564 2053 95 46 0 chr15 30053116 30053401 -55642353 + AluSg SINE Alu 1 298 -12 375 342 120 25 chr15 30053401 30053434 -55642320 - L2 LINE L2 -1750 1564 1536 2040 117 0 0 chr15 30054265 30054569 -55641185 + AluSx SINE Alu 1 304 0 1578 170 18 0 chr15 30054572 30054849 -55640905 + L1MC1 LINE L1 6046 6327 -6 354 313 0 0 chr15 30055499 30055611 -55640143 + (CCAA)n Simple_repeat Simple_repeat 4 115 0 2215 108 0 0 chr15 30056033 30056330 -55639424 + AluSq SINE Alu 1 297 -16 228 241 86 0 chr15 30056826 30056884 -55638870 - MIR SINE MIR -44 218 156 1994 101 11 14 chr15 30057126 30057413 -55638341 + AluSq SINE Alu 1 286 -27 803 87 0 0 chr15 30057527 30057631 -55638123 - AluY SINE Alu -207 104 1 211 308 13 13 chr15 30057838 30057916 -55637838 - MIR3 SINE MIR -22 186 109 2347 68 0 0 chr15 30058282 30058575 -55637179 - AluSg SINE Alu -16 294 2 825 168 68 6 chr15 30058633 30058860 -55636894 - L1MA7 LINE L1 -2 6310 6064 1754 141 4 0 chr15 30059477 30059753 -55636001 + AluJo SINE Alu 1 277 -35 2078 91 7 29 chr15 30060528 30060837 -55634917 - AluSq SINE Alu -5 308 7 2203 103 0 0 chr15 30060961 30061262 -55634492 - AluSx SINE Alu -11 301 1 692 145 11 34 chr15 30062241 30062420 -55633334 + GA-rich Low_complexity Low_complexity 3 177 0 211 218 13 39 chr15 30062444 30062522 -55633232 + A-rich Low_complexity Low_complexity 3 78 0 23 24 0 24 chr15 30063116 30063138 -55632616 + AT_rich Low_complexity Low_complexity 1 23 -17 2764 6 0 6 chr15 30063138 30063451 -55632303 + AluYa5 SINE Alu 1 311 0 23 24 0 24 chr15 30063451 30063469 -55632285 + AT_rich Low_complexity Low_complexity 23 40 0 1096 180 23 18 chr15 30063503 30063720 -55632034 - MER20 DNA MER1_type 0 219 2 194 389 0 14 chr15 30065399 30065471 -55630283 + MER5B DNA MER1_type 13 83 -95 189 329 49 0 chr15 30065504 30065586 -55630168 + MER5A DNA MER1_type 83 168 -21 2158 98 0 7 chr15 30066532 30066838 -55628916 + AluSx SINE Alu 1 304 -8 221 265 44 0 chr15 30066941 30067009 -55628745 - MIR SINE MIR -72 190 120 451 301 83 23 chr15 30067016 30067222 -55628532 - MIR SINE MIR -32 230 16 2349 144 8 11 chr15 30068049 30068430 -55627324 + MLT1B LTR MaLR 11 390 0 207 0 0 0 chr15 30068760 30068783 -55626971 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 390 46 2 37 chr15 30068790 30068851 -55626903 - AluY SINE Alu -14 287 236 1404 179 6 85 chr15 30069145 30069475 -55626279 - AluJb SINE Alu -8 304 1 814 134 15 15 chr15 30069475 30069609 -55626145 - AluJo SINE Alu -177 135 2 219 139 0 0 chr15 30069671 30069707 -55626047 + (A)n Simple_repeat Simple_repeat 1 36 0 620 272 40 29 chr15 30070322 30070495 -55625259 + MER91A DNA MER1_type 2 176 -20 259 258 103 10 chr15 30070495 30070592 -55625162 + MER91A DNA MER1_type 91 196 0 2135 108 3 0 chr15 30070648 30070953 -55624801 + AluSp SINE Alu 1 306 -7 1865 118 0 7 chr15 30070958 30071247 -55624507 + AluY SINE Alu 1 287 -24 207 0 0 0 chr15 30071254 30071277 -55624477 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr15 30071860 30071883 -55623871 + (TG)n Simple_repeat Simple_repeat 1 23 0 863 154 0 27 chr15 30071890 30072039 -55623715 - FRAM SINE Alu -30 146 2 436 221 159 0 chr15 30072651 30072764 -55622990 + MER58B DNA MER1_type 211 341 0 230 304 70 97 chr15 30072866 30073123 -55622631 - L2 LINE L2 -198 3074 2825 397 267 67 8 chr15 30073133 30073253 -55622501 - L2 LINE L2 0 3313 3187 279 355 121 27 chr15 30076508 30076846 -55618908 - L3 LINE CR1 -22 1555 1186 1495 161 7 21 chr15 30078426 30078736 -55617018 - AluJo SINE Alu 0 306 1 186 224 155 0 chr15 30078737 30078795 -55616959 - L3 LINE CR1 -824 753 687 32 57 0 0 chr15 30079095 30079148 -55616606 + AT_rich Low_complexity Low_complexity 1 53 0 684 189 14 14 chr15 30079887 30080035 -55615719 - AluSg/x SINE Alu 0 310 163 1997 119 0 3 chr15 30081262 30081586 -55614168 - AluSx SINE Alu 0 323 1 297 169 0 28 chr15 30081658 30081729 -55614025 - L1MA7 LINE L1 -2 6289 6221 229 31 0 0 chr15 30082082 30082114 -55613640 + Alu SINE Alu 102 133 -166 2200 92 0 3 chr15 30082114 30082409 -55613345 + AluSg SINE Alu 1 294 -16 246 62 0 0 chr15 30083602 30083634 -55612120 + (GGGTG)n Simple_repeat Simple_repeat 3 34 0 218 203 0 17 chr15 30084254 30084313 -55611441 + GA-rich Low_complexity Low_complexity 3 60 0 393 267 161 37 chr15 30084678 30084708 -55611046 - MIR SINE MIR -79 183 158 503 96 0 24 chr15 30084708 30084791 -55610963 - L1MA4 LINE L1 -4 6296 6216 393 267 161 37 chr15 30084791 30084921 -55610833 - MIR SINE MIR -104 158 3 265 310 23 23 chr15 30085406 30085493 -55610261 + L2 LINE L2 3186 3272 0 326 294 118 87 chr15 30085616 30086007 -55609747 - L2 LINE L2 -4 3268 2866 234 0 0 0 chr15 30086183 30086209 -55609545 + (CA)n Simple_repeat Simple_repeat 2 27 0 469 304 114 5 chr15 30086552 30086753 -55609001 - MIR SINE MIR -16 246 24 470 205 27 9 chr15 30087016 30087128 -55608626 - Charlie8 DNA MER1_type -2195 222 109 292 281 157 38 chr15 30087214 30087424 -55608330 - MIR SINE MIR -15 247 13 372 336 130 0 chr15 30087907 30088053 -55607701 - MIR SINE MIR -78 184 20 215 278 113 31 chr15 30088632 30088729 -55607025 + L2 LINE L2 3132 3236 -36 2287 97 0 0 chr15 30088759 30089070 -55606684 + AluY SINE Alu 1 311 0 328 291 166 40 chr15 30090103 30090278 -55605476 + MIR SINE MIR 63 259 -3 1528 234 30 8 chr15 30091771 30092134 -55603620 + MLT1A2 LTR MaLR 4 374 0 981 251 146 24 chr15 30092442 30092906 -55602848 + L2 LINE L2 2788 3312 -1 675 295 126 44 chr15 30093618 30094093 -55601661 + LTR33 LTR ERVL 3 516 -5 1928 136 27 0 chr15 30094476 30094770 -55600984 - AluJb SINE Alu -10 302 1 588 289 100 0 chr15 30095476 30095656 -55600098 - MIR SINE MIR -37 225 28 245 125 0 0 chr15 30095970 30096010 -55599744 - MER96 DNA MER1_type? -82 93 54 185 277 0 0 chr15 30096223 30096270 -55599484 - L2 LINE L2 -16 3256 3210 2063 118 0 0 chr15 30096345 30096634 -55599120 + AluSx SINE Alu 1 289 -23 1892 108 57 20 chr15 30097224 30097521 -55598233 + AluSc SINE Alu 1 308 -1 754 303 14 23 chr15 30097788 30098009 -55597745 + MIR SINE MIR 41 259 -3 1883 142 3 7 chr15 30098329 30098632 -55597122 - AluSc SINE Alu -7 302 1 22 0 0 0 chr15 30098632 30098654 -55597100 + AT_rich Low_complexity Low_complexity 1 22 0 341 355 120 0 chr15 30098892 30098953 -55596801 - MIR SINE MIR -38 224 172 1563 167 61 0 chr15 30098953 30099247 -55596507 + AluJo SINE Alu 1 312 0 341 355 120 0 chr15 30099247 30099368 -55596386 - MIR SINE MIR -90 172 20 470 258 0 8 chr15 30099385 30099509 -55596245 - L1MA10 LINE L1 -2 6332 6210 378 272 0 22 chr15 30099527 30099619 -55596135 + L1MC4 LINE L1 6614 6703 -1339 * 393 289 0 0 chr15 30099563 30099653 -55596101 - L1MC4 LINE L1 -1339 6703 6614 2330 81 0 0 chr15 30100178 30100474 -55595280 - AluSx SINE Alu -16 296 1 212 268 30 152 chr15 30101880 30101983 -55593771 + MIR3 SINE MIR 1 78 -130 1486 196 3 17 chr15 30101983 30102274 -55593480 + AluJo SINE Alu 1 287 -25 212 268 30 152 chr15 30102274 30102334 -55593420 + MIR3 SINE MIR 78 144 -64 1524 207 15 21 chr15 30102355 30102684 -55593070 + MLT1A1 LTR MaLR 4 330 -35 21 0 0 0 chr15 30102711 30102732 -55593022 + AT_rich Low_complexity Low_complexity 1 21 0 408 205 118 31 chr15 30103062 30103189 -55592565 - L2 LINE L2 -13 3300 3163 1806 155 7 3 chr15 30103231 30103521 -55592233 - AluJb SINE Alu -21 291 1 278 266 16 0 chr15 30103560 30103624 -55592130 - L1MCa LINE L1 -5731 695 631 344 274 86 26 chr15 30104005 30104122 -55591632 + MER63 DNA MER1_type 1 750 -86 329 259 0 12 chr15 30104124 30104209 -55591545 + MER63 DNA MER1_type 978 1061 0 2662 175 91 12 chr15 30105110 30105629 -55590125 - MER68 LTR ERV1 -2 560 1 336 256 183 0 chr15 30105825 30105962 -55589792 - MIR SINE MIR -23 239 78 309 317 46 36 chr15 30105971 30106127 -55589627 - MIR3 SINE MIR -18 190 28 327 282 10 39 chr15 30107013 30107116 -55588638 + MIR SINE MIR 113 212 -50 215 300 17 0 chr15 30107143 30107203 -55588551 - MIR SINE MIR -95 167 107 195 372 26 0 chr15 30107216 30107294 -55588460 + MIR SINE MIR 28 107 -101 288 158 0 88 chr15 30108096 30108153 -55587601 + MIR SINE MIR 57 108 -154 317 214 29 0 chr15 30108875 30108945 -55586809 + MIR SINE MIR 77 148 -60 218 267 67 13 chr15 30109487 30109562 -55586192 - MIR3 SINE MIR -49 159 81 360 297 73 24 chr15 30109675 30109840 -55585914 - MIR SINE MIR -14 248 76 330 320 163 7 chr15 30110620 30110767 -55584987 - MIR SINE MIR -85 177 8 365 278 40 26 chr15 30112224 30112375 -55583379 + MIR SINE MIR 70 222 -40 673 150 84 84 chr15 30112548 30112685 -55583069 + MLT1B LTR MaLR 1 140 -250 2198 99 3 0 chr15 30112685 30112979 -55582775 - AluSq SINE Alu -17 296 2 673 150 84 84 chr15 30112979 30113008 -55582746 + MLT1B LTR MaLR 139 167 -223 1710 217 20 46 chr15 30113096 30113612 -55582142 + L1ME2 LINE L1 5659 6149 -15 967 185 0 11 chr15 30113831 30114009 -55581745 - FRAM SINE Alu 0 176 1 1899 100 0 0 chr15 30114091 30114341 -55581413 + AluSx SINE Alu 1 250 -62 6780 63 2 17 chr15 30114496 30115413 -55580341 + SVA Other Other 483 1385 -1 234 0 0 0 chr15 30115434 30115460 -55580294 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1757 107 4 0 chr15 30116151 30116404 -55579350 + AluSp SINE Alu 1 254 -59 199 222 0 0 chr15 30116911 30116947 -55578807 + L2 LINE L2 3264 3299 -14 22 65 0 0 chr15 30118357 30118388 -55577366 + AT_rich Low_complexity Low_complexity 1 31 0 27 49 0 0 chr15 30118532 30118573 -55577181 + GC_rich Low_complexity Low_complexity 1 41 0 539 340 96 13 chr15 30119070 30119807 -55575947 + L1ME LINE L1 4210 5028 -1118 539 258 69 74 chr15 30119869 30120120 -55575634 + L1ME LINE L1 5268 5522 -744 2633 22 0 3 chr15 30120120 30120431 -55575323 + AluY SINE Alu 1 310 -1 539 258 69 74 chr15 30120431 30120516 -55575238 + L1ME LINE L1 5522 5606 -660 249 153 188 35 chr15 30120557 30120642 -55575112 + L1ME LINE L1 5693 5790 -331 26 64 0 0 chr15 30121006 30121053 -55574701 + AT_rich Low_complexity Low_complexity 1 47 0 2459 225 95 27 chr15 30121167 30121948 -55573806 - L1ME3A LINE L1 -5 6165 5332 873 267 118 18 chr15 30121954 30122284 -55573470 - HAL1 LINE L1 -2135 372 10 * 1021 225 50 4 chr15 30122277 30122535 -55573219 - L1ME3A LINE L1 -870 5276 5007 628 141 99 8 chr15 30122546 30122667 -55573087 - FLAM_C SINE Alu 0 133 2 844 151 0 41 chr15 30122696 30122746 -55573008 - FLAM_A SINE Alu -169 142 91 3978 75 87 5 chr15 30122746 30123310 -55572444 + LTR66 LTR ERVL 1 610 0 844 151 0 41 chr15 30123310 30123405 -55572349 - FLAM_A SINE Alu -220 91 3 512 193 32 26 chr15 30123422 30123633 -55572121 - L1M4c LINE L1 -3927 2489 2237 2208 153 23 8 chr15 30123702 30124094 -55571660 - L1M4 LINE L1 -414 6581 6184 2079 212 33 25 chr15 30124195 30124353 -55571401 - L1M4 LINE L1 -994 5963 5808 1430 217 27 0 chr15 30124353 30124648 -55571106 - AluJo SINE Alu -8 304 2 2079 212 33 25 chr15 30124648 30125007 -55570747 - L1M4 LINE L1 -1149 5808 5442 * 2112 136 33 32 chr15 30125002 30125447 -55570307 - L1MCa LINE L1 -3908 3049 2602 5151 249 87 27 chr15 30125455 30126916 -55568838 - L1MCa LINE L1 -5310 1549 2 1366 133 41 7 chr15 30127513 30127784 -55567970 - AluY SINE Alu -11 300 21 575 298 144 14 chr15 30128395 30128847 -55566907 + MLT1K LTR MaLR 44 580 -8 2329 77 20 0 chr15 30128939 30129236 -55566518 + AluSc SINE Alu 1 303 -6 202 354 81 0 chr15 30129291 30129390 -55566364 + L2 LINE L2 3204 3310 -3 1774 147 82 3 chr15 30129441 30129760 -55565994 - MER7A DNA MER2_type -1 345 4 220 223 85 77 chr15 30132573 30132703 -55563051 + MIR SINE MIR 80 210 -52 285 29 0 0 chr15 30132855 30132889 -55562865 + (TG)n Simple_repeat Simple_repeat 2 35 0 325 286 26 0 chr15 30134781 30134858 -55560896 - MIR3 SINE MIR -15 193 115 2155 103 17 0 chr15 30135382 30135673 -55560081 - AluSx SINE Alu -16 296 1 180 111 0 0 chr15 30136425 30136452 -55559302 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 305 104 45 90 chr15 30137887 30137954 -55557800 + MER3 DNA MER1_type 41 104 -105 1975 98 76 0 chr15 30138414 30138689 -55557065 - AluSq SINE Alu -17 296 1 1594 74 0 0 chr15 30138702 30138892 -55556862 - AluSq SINE Alu -48 265 76 607 110 0 0 chr15 30138968 30139059 -55556695 + AluY SINE Alu 1 91 -227 582 180 13 27 chr15 30140178 30140328 -55555426 + AluY SINE Alu 164 311 0 343 264 66 33 chr15 30140571 30140692 -55555062 + L2 LINE L2 3180 3304 -9 443 266 46 0 chr15 30140791 30140900 -55554854 + L2 LINE L2 3192 3305 -8 2464 85 0 16 chr15 30142235 30142553 -55553201 + AluSq SINE Alu 1 313 0 25 51 0 0 chr15 30142745 30142784 -55552970 + AT_rich Low_complexity Low_complexity 1 39 0 2009 144 0 10 chr15 30143507 30143806 -55551948 + AluSx SINE Alu 1 296 -16 2451 68 0 0 chr15 30144793 30145088 -55550666 + AluY SINE Alu 1 295 -16 216 0 0 0 chr15 30145854 30145878 -55549876 + (A)n Simple_repeat Simple_repeat 1 24 0 531 248 89 78 chr15 30146440 30146708 -55549046 + MIR SINE MIR 1 262 0 1124 73 0 0 chr15 30146892 30147043 -55548711 - L1PA4 LINE L1 0 6155 6005 2171 131 3 6 chr15 30147783 30148096 -55547658 + AluSx SINE Alu 1 312 0 27 0 0 0 chr15 30149032 30149059 -55546695 + AT_rich Low_complexity Low_complexity 1 27 0 2003 140 20 0 chr15 30149472 30149765 -55545989 - AluJo SINE Alu -13 299 1 22 0 0 0 chr15 30149881 30149903 -55545851 + AT_rich Low_complexity Low_complexity 1 22 0 1205 126 5 0 chr15 30150601 30150792 -55544962 + L1MB3 LINE L1 5979 6170 -13 1676 188 3 10 chr15 30151489 30151777 -55543977 + AluJo SINE Alu 1 286 -26 23 33 0 0 chr15 30152071 30152101 -55543653 + AT_rich Low_complexity Low_complexity 1 30 0 2258 261 114 19 chr15 30152246 30153233 -55542521 + L2 LINE L2 2216 3313 0 182 311 0 0 chr15 30153762 30153807 -55541947 + MER5B DNA MER1_type 1 45 -133 848 223 0 69 chr15 30153808 30154041 -55541713 - AluJo SINE Alu -17 295 79 201 74 0 0 chr15 30154044 30154071 -55541683 + (T)n Simple_repeat Simple_repeat 1 27 0 451 256 8 32 chr15 30154071 30154196 -55541558 - MER5B DNA MER1_type -50 128 7 26 50 0 0 chr15 30155254 30155294 -55540460 + AT_rich Low_complexity Low_complexity 1 40 0 658 189 82 0 chr15 30156329 30156488 -55539266 - MER104 DNA Tc2 -6 174 3 2015 142 0 7 chr15 30156750 30157053 -55538701 + AluSp SINE Alu 1 301 -12 517 170 80 6 chr15 30157122 30157281 -55538473 + MSTD LTR MaLR 185 393 -3 308 252 213 13 chr15 30157508 30157663 -55538091 + MIR3 SINE MIR 20 205 -3 329 269 0 0 chr15 30158594 30158687 -55537067 - MARNA DNA Mariner -8 578 486 493 274 81 87 chr15 30158726 30159073 -55536681 - L2 LINE L2 0 3272 2928 235 182 0 0 chr15 30159117 30159161 -55536593 - MARNA DNA Mariner -199 387 344 2415 89 7 0 chr15 30159299 30159603 -55536151 + AluSg SINE Alu 1 306 -4 252 342 76 0 chr15 30159845 30159924 -55535830 + L2 LINE L2 3141 3225 -47 285 154 231 0 chr15 30159998 30160063 -55535691 - MADE1 DNA Mariner 0 80 1 895 266 10 0 chr15 30160063 30160255 -55535499 - MIR SINE MIR -67 195 2 251 291 0 0 chr15 30160255 30160309 -55535445 + L2 LINE L2 3214 3267 -5 22 0 0 0 chr15 30162019 30162041 -55533713 + AT_rich Low_complexity Low_complexity 1 22 0 183 204 0 0 chr15 30163578 30163622 -55532132 + A-rich Low_complexity Low_complexity 2 45 0 2143 116 0 17 chr15 30164724 30165025 -55530729 + AluSq SINE Alu 1 296 -17 2023 139 10 10 chr15 30166136 30166437 -55529317 + AluJb SINE Alu 1 301 -11 2344 96 0 3 chr15 30166692 30166993 -55528761 + AluSx SINE Alu 1 300 -12 526 246 188 22 chr15 30167949 30168173 -55527581 - MIR SINE MIR -1 261 1 1027 303 71 36 chr15 30168189 30168835 -55526919 + L2 LINE L2 2128 2796 -518 450 321 9 0 chr15 30168829 30168935 -55526819 + L2 LINE L2 3138 3244 -28 * 1083 164 54 131 chr15 30169117 30169359 -55526395 + MER2 DNA MER2_type 1 205 -139 1448 155 30 37 chr15 30169359 30169656 -55526098 + AluSx SINE Alu 1 295 -17 1083 164 54 131 chr15 30169656 30169786 -55525968 + MER2 DNA MER2_type 205 344 0 32 26 0 0 chr15 30169967 30170006 -55525748 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr15 30170286 30170308 -55525446 + AT_rich Low_complexity Low_complexity 1 22 0 334 137 0 105 chr15 30170454 30170549 -55525205 + L1PA8 LINE L1 6081 6165 -7 2383 67 0 0 chr15 30173250 30173534 -55522220 - AluY SINE Alu -27 284 1 256 273 49 49 chr15 30174007 30174150 -55521604 - L3 LINE CR1 -122 1455 1313 29 28 0 0 chr15 30174251 30174287 -55521467 + AT_rich Low_complexity Low_complexity 1 36 0 2497 77 0 6 chr15 30175802 30176114 -55519640 + AluY SINE Alu 1 310 -1 1038 180 5 16 chr15 30176303 30176492 -55519262 - MER5A DNA MER1_type -1 188 2 1055 256 95 50 chr15 30177371 30177876 -55517878 + L1ME4a LINE L1 5285 5857 -264 2238 113 0 0 chr15 30177876 30178176 -55517578 + AluSg SINE Alu 1 300 -10 1055 256 95 50 chr15 30178176 30178452 -55517302 + L1ME4a LINE L1 5857 6119 -2 208 314 0 0 chr15 30178798 30178868 -55516886 + C-rich Low_complexity Low_complexity 3 72 0 21 36 0 0 chr15 30179098 30179126 -55516628 + AT_rich Low_complexity Low_complexity 1 28 0 1112 126 44 0 chr15 30179149 30179331 -55516423 - MER2 DNA MER2_type -155 190 1 337 240 212 14 chr15 30179734 30179880 -55515874 - L1ME4a LINE L1 -4 6117 5943 264 320 8 31 chr15 30179959 30180087 -55515667 - L1ME4a LINE L1 -316 5805 5681 26 0 0 0 chr15 30180178 30180204 -55515550 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr15 30180263 30180286 -55515468 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr15 30180915 30180938 -55514816 + (A)n Simple_repeat Simple_repeat 1 23 0 671 214 94 14 chr15 30181885 30182129 -55513625 + MLT1H LTR MaLR 12 302 -293 318 212 161 63 chr15 30182167 30182311 -55513443 + MLT1H1 LTR MaLR 415 553 -2 428 257 35 18 chr15 30182427 30182540 -55513214 + MIR SINE MIR 2 116 -146 21 0 0 0 chr15 30182714 30182735 -55513019 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr15 30183072 30183113 -55512641 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr15 30183197 30183220 -55512534 + AT_rich Low_complexity Low_complexity 1 23 0 342 256 103 0 chr15 30185036 30185153 -55510601 + MIR SINE MIR 124 252 -10 180 349 53 30 chr15 30185461 30185593 -55510161 + L2 LINE L2 1057 1191 -2123 21 36 0 0 chr15 30186645 30186673 -55509081 + AT_rich Low_complexity Low_complexity 1 28 0 322 297 63 0 chr15 30187381 30187492 -55508262 + L2 LINE L2 3155 3272 0 198 0 0 0 chr15 30188547 30188569 -55507185 + (A)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chr15 30188673 30188696 -55507058 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr15 30188836 30188864 -55506890 + AT_rich Low_complexity Low_complexity 1 28 0 602 60 0 0 chr15 30189702 30189786 -55505968 + L1MB3 LINE L1 6085 6168 -15 405 0 0 0 chr15 30189788 30189833 -55505921 + (CA)n Simple_repeat Simple_repeat 2 46 0 644 172 8 25 chr15 30190540 30190662 -55505092 + FLAM_C SINE Alu 1 120 -13 878 73 89 0 chr15 30191577 30191701 -55504053 - MER85 DNA T2_type -4 135 1 207 0 0 0 chr15 30191787 30191810 -55503944 + (T)n Simple_repeat Simple_repeat 1 23 0 1963 173 3 3 chr15 30192748 30193054 -55502700 + AluJo SINE Alu 1 306 -6 1625 152 68 0 chr15 30193524 30193841 -55501913 + AluJo SINE Alu 2 336 0 181 376 43 11 chr15 30195131 30195224 -55500530 + L3 LINE CR1 1417 1512 -65 297 0 0 0 chr15 30195872 30195905 -55499849 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1679 218 75 27 chr15 30196317 30196799 -55498955 + MLT1D LTR MaLR 1 505 0 752 258 0 0 chr15 30196921 30197072 -55498682 + FRAM SINE Alu 6 156 -20 21 0 0 0 chr15 30197072 30197093 -55498661 + AT_rich Low_complexity Low_complexity 1 21 0 2191 107 3 3 chr15 30199059 30199350 -55496404 + AluSc SINE Alu 1 291 -18 354 264 20 7 chr15 30199489 30199653 -55496101 - AluSg/x SINE Alu -2 298 161 1590 186 4 0 chr15 30199845 30200120 -55495634 - AluSx SINE Alu -36 276 1 2296 85 17 0 chr15 30200490 30200784 -55494970 + AluSg SINE Alu 1 299 -11 903 150 150 0 chr15 30201027 30201187 -55494567 + MER5A DNA MER1_type 1 184 -5 2171 127 0 0 chr15 30202404 30202703 -55493051 + AluSx SINE Alu 2 300 -12 2234 80 0 3 chr15 30202735 30203021 -55492733 + AluSg SINE Alu 1 285 -25 493 208 135 45 chr15 30203723 30203968 -55491786 + L1ME4a LINE L1 5616 5882 -239 180 0 0 0 chr15 30204013 30204033 -55491721 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 243 0 0 0 chr15 30204032 30204059 -55491695 + (CA)n Simple_repeat Simple_repeat 1 27 0 977 187 18 36 chr15 30204143 30204368 -55491386 - AluSq SINE Alu -4 309 89 332 164 153 68 chr15 30204595 30204772 -55490982 + AluJo SINE Alu 108 299 -3 1108 213 55 35 chr15 30204791 30205234 -55490520 + L1MC4a LINE L1 6851 7476 -516 571 277 43 62 chr15 30205247 30205503 -55490251 + MIR SINE MIR 2 252 -10 2218 123 0 0 chr15 30206648 30206956 -55488798 - AluY SINE Alu -3 308 1 618 106 48 0 chr15 30208074 30208178 -55487576 - AluSq SINE Alu -203 109 1 251 146 0 61 chr15 30208188 30208270 -55487484 + L1ME4a LINE L1 6042 6118 -3 1936 125 28 3 chr15 30208272 30208560 -55487194 + AluSq SINE Alu 1 295 -18 364 268 12 0 chr15 30211242 30211324 -55484430 - MIR SINE MIR -68 194 112 23 0 0 0 chr15 30211540 30211563 -55484191 + AT_rich Low_complexity Low_complexity 1 23 0 1807 129 36 18 chr15 30212011 30212319 -55483435 + AluJb SINE Alu 1 313 0 1859 164 10 3 chr15 30212531 30212824 -55482930 - AluJb SINE Alu -17 295 1 186 325 208 0 chr15 30213490 30213610 -55482144 + MIR SINE MIR 6 150 -112 21 36 0 0 chr15 30213718 30213746 -55482008 + AT_rich Low_complexity Low_complexity 1 28 0 801 266 68 29 chr15 30214717 30215025 -55480729 - MER46C DNA MER2_type 0 338 19 2163 128 0 3 chr15 30215653 30215957 -55479797 + AluSp SINE Alu 1 303 -10 2272 77 114 19 chr15 30216017 30216394 -55479360 + L1MA2 LINE L1 5892 6304 0 2085 132 6 10 chr15 30216531 30216842 -55478912 - AluJb SINE Alu -2 310 1 569 331 60 33 chr15 30216937 30217303 -55478451 - L1MC/D LINE L1 -2053 5755 5380 449 296 149 37 chr15 30218696 30219017 -55476737 - L2 LINE L2 -1 3312 2956 2341 104 0 0 chr15 30219367 30219675 -55476079 - AluY SINE Alu -3 308 1 551 215 60 35 chr15 30220996 30221196 -55474558 - HAL1 LINE L1 -6 2501 2297 867 252 34 13 chr15 30221517 30221751 -55474003 - MIR SINE MIR -22 240 2 426 352 114 39 chr15 30223724 30224056 -55471698 - L2 LINE L2 0 3272 2916 319 304 35 38 chr15 30224407 30224553 -55471201 - MIR3 SINE MIR -76 132 7 1602 179 3 49 chr15 30224689 30225014 -55470740 + AluSx SINE Alu 1 310 -2 282 280 68 23 chr15 30225135 30225267 -55470487 - L1MEd LINE L1 -3573 2556 2419 738 205 63 0 chr15 30225302 30225429 -55470325 - FRAM SINE Alu -30 146 12 234 330 73 0 chr15 30225447 30225626 -55470128 - L1MEd LINE L1 -3735 2394 2203 1918 126 73 35 chr15 30225637 30226033 -55469721 - L1PA16 LINE L1 0 6166 5756 1506 214 135 12 chr15 30226349 30226849 -55468905 - L1MC4 LINE L1 -8 7987 7284 594 291 50 53 chr15 30226936 30227060 -55468694 - L1MEd LINE L1 -4616 1694 1571 2061 136 10 0 chr15 30227060 30227355 -55468399 - AluSx SINE Alu -14 298 1 594 291 50 53 chr15 30227355 30227924 -55467830 - L1MEd LINE L1 -4739 1571 967 606 307 82 45 chr15 30227955 30228492 -55467262 - L1MEd LINE L1 -5353 766 210 2293 100 0 0 chr15 30228548 30228878 -55466876 + AluSx SINE Alu 1 330 0 2205 197 56 0 chr15 30229274 30229736 -55466018 + L1MB8 LINE L1 5685 6172 -6 2223 102 3 29 chr15 30229993 30230307 -55465447 + AluSq SINE Alu 1 306 -7 342 0 0 0 chr15 30231068 30231106 -55464648 + (CA)n Simple_repeat Simple_repeat 1 38 0 547 310 59 35 chr15 30231581 30231836 -55463918 + MIR SINE MIR 2 262 0 577 146 0 0 chr15 30232279 30232368 -55463386 - AluY SINE Alu -10 301 213 411 282 176 8 chr15 30232429 30232560 -55463194 - MER5A DNA MER1_type 0 189 37 748 180 93 0 chr15 30233020 30233170 -55462584 - L1MB7 LINE L1 -10 6174 6011 47 0 0 0 chr15 30233555 30233602 -55462152 + AT_rich Low_complexity Low_complexity 1 47 0 555 231 0 69 chr15 30233782 30233985 -55461769 - L1MC5 LINE L1 -51 7910 7722 30 59 0 0 chr15 30234232 30234283 -55461471 + AT_rich Low_complexity Low_complexity 1 51 0 238 254 34 0 chr15 30234855 30234914 -55460840 + tRNA-Ile-ATT tRNA tRNA 11 71 -6 2423 81 0 3 chr15 30236668 30236965 -55458789 - AluSc SINE Alu -13 296 1 298 255 39 20 chr15 30237896 30237998 -55457756 + MER103 DNA DNA 9 112 -54 228 329 150 36 chr15 30239529 30239696 -55456058 + MIR3 SINE MIR 17 202 -6 2295 112 3 0 chr15 30239977 30240282 -55455472 + AluSq SINE Alu 1 306 -7 739 127 0 84 chr15 30240292 30240434 -55455320 + FLAM_C SINE Alu 1 130 -3 2206 139 55 44 chr15 30241057 30241509 -55454245 + MSTB2 LTR MaLR 1 457 0 22 0 0 0 chr15 30243416 30243438 -55452316 + AT_rich Low_complexity Low_complexity 1 22 0 381 70 70 0 chr15 30243474 30243531 -55452223 + HERV15 LTR ERV1 2687 2747 -5988 327 160 0 0 chr15 30243531 30243581 -55452173 + tRNA-Ile-ATT tRNA tRNA 28 77 0 3470 70 23 13 chr15 30243614 30244086 -55451668 - LTR15 LTR ERV1 -16 477 1 1723 211 61 5 chr15 30244652 30245027 -55450727 + MSTD LTR MaLR 1 396 0 325 301 98 55 chr15 30245105 30245288 -55450466 - L2 LINE L2 -219 3053 2863 216 255 0 0 chr15 30245448 30245499 -55450255 - L2 LINE L2 0 3313 3263 342 80 0 0 chr15 30245832 30245882 -55449872 + (GA)n Simple_repeat Simple_repeat 2 51 0 248 393 88 4 chr15 30245991 30246263 -55449491 - L3 LINE CR1 -742 835 541 24 0 0 0 chr15 30246664 30246688 -55449066 + AT_rich Low_complexity Low_complexity 1 24 0 1862 196 15 35 chr15 30247110 30247204 -55448550 + MSTD LTR MaLR 1 95 -301 1873 174 7 0 chr15 30247204 30247502 -55448252 + AluJb SINE Alu 1 300 -12 1862 196 15 35 chr15 30247502 30247811 -55447943 + MSTD LTR MaLR 95 396 0 295 293 273 25 chr15 30248038 30248236 -55447518 + MIR SINE MIR 13 259 -3 231 357 31 19 chr15 30248615 30248802 -55446952 - MIR SINE MIR -40 222 33 303 353 42 0 chr15 30248944 30249063 -55446691 - MIR3 SINE MIR -43 165 42 915 228 81 75 chr15 30249517 30249877 -55445877 + L2 LINE L2 2313 2674 -640 1326 175 16 40 chr15 30249899 30250202 -55445552 - AluJo SINE Alu -5 297 2 375 272 68 10 chr15 30250230 30250333 -55445421 + L2 LINE L2 3203 3311 -2 2515 69 0 0 chr15 30250451 30250757 -55444997 + AluY SINE Alu 1 306 -5 711 267 92 0 chr15 30251502 30251708 -55444046 + MIR SINE MIR 38 262 0 26 0 0 0 chr15 30251718 30251744 -55444010 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr15 30251981 30252005 -55443749 + AT_rich Low_complexity Low_complexity 1 24 0 775 189 0 0 chr15 30252159 30252286 -55443468 + FLAM_A SINE Alu 1 127 -6 271 323 32 21 chr15 30252344 30252437 -55443317 + MIR SINE MIR 48 141 -67 2148 116 0 0 chr15 30252533 30252845 -55442909 - AluSx SINE Alu 0 312 1 573 265 38 57 chr15 30253388 30253652 -55442102 + L1ME4a LINE L1 5569 5827 -294 1675 167 22 7 chr15 30253662 30253937 -55441817 - AluJb SINE Alu -27 285 7 239 222 111 28 chr15 30254049 30254157 -55441597 - L2 LINE L2 -167 3146 3030 281 204 333 15 chr15 30254159 30254360 -55441394 + L1ME4a LINE L1 5817 6081 -40 572 246 51 99 chr15 30254387 30254700 -55441054 - L2 LINE L2 -2 3311 3014 219 267 27 0 chr15 30254944 30255019 -55440735 + A-rich Low_complexity Low_complexity 5 81 0 188 200 0 0 chr15 30255233 30255268 -55440486 + L2 LINE L2 2125 2159 -1155 442 272 149 41 chr15 30256083 30256278 -55439476 + MIR SINE MIR 1 216 -46 1139 202 0 0 chr15 30256454 30256657 -55439097 + AluSx SINE Alu 1 203 -109 1901 159 3 0 chr15 30257008 30257304 -55438450 + AluSx SINE Alu 1 297 -15 678 179 0 8 chr15 30257309 30257426 -55438328 + FLAM_C SINE Alu 7 122 -21 236 175 35 18 chr15 30257431 30257488 -55438266 + (CATA)n Simple_repeat Simple_repeat 3 60 0 853 216 143 76 chr15 30257529 30257761 -55437993 + L1MD3 LINE L1 6633 6895 -1100 1569 141 115 7 chr15 30257761 30258030 -55437724 + AluJo SINE Alu 1 298 -14 853 216 143 76 chr15 30258030 30258125 -55437629 + L1MD3 LINE L1 6895 6982 -1013 25 65 0 0 chr15 30259646 30259692 -55436062 + AT_rich Low_complexity Low_complexity 1 46 0 387 316 7 14 chr15 30260019 30260158 -55435596 - MIR SINE MIR -122 140 3 1395 150 38 4 chr15 30265101 30265368 -55430386 + L1MA4 LINE L1 6023 6298 -2 269 229 117 12 chr15 30265404 30265526 -55430228 + MIR SINE MIR 73 215 -47 1955 129 0 17 chr15 30268231 30268540 -55427214 - AluSx SINE Alu 0 304 1 189 241 52 52 chr15 30269129 30269187 -55426567 - L2 LINE L2 -7 3265 3208 774 148 7 15 chr15 30269474 30269609 -55426145 + FLAM_C SINE Alu 1 134 -9 2363 91 3 0 chr15 30269754 30270063 -55425691 - AluSg SINE Alu 0 310 1 1682 152 34 0 chr15 30270114 30270383 -55425371 + AluJo SINE Alu 1 278 -34 704 247 19 0 chr15 30270730 30270884 -55424870 + FRAM SINE Alu 1 157 -19 501 269 88 19 chr15 30271240 30271400 -55424354 - MIR3 SINE MIR -6 202 32 1058 101 6 6 chr15 30272687 30272839 -55422915 - L1M2 LINE L1 -593 5707 5555 455 115 58 11 chr15 30272839 30272925 -55422829 + L1MA6 LINE L1 6210 6300 0 1903 111 61 20 chr15 30273099 30273396 -55422358 - AluSx SINE Alu -3 309 1 225 316 31 20 chr15 30273598 30273640 -55422114 + MIR SINE MIR 164 204 -58 2092 110 7 30 chr15 30273640 30273941 -55421813 + AluSq SINE Alu 1 294 -19 225 316 31 20 chr15 30273941 30273996 -55421758 + MIR SINE MIR 204 262 0 573 246 121 3 chr15 30274840 30274979 -55420775 - L1MC1 LINE L1 0 6344 6171 1983 92 51 24 chr15 30274979 30275272 -55420482 - AluSx SINE Alu -11 301 1 573 246 121 3 chr15 30275272 30275340 -55420414 - L1MC1 LINE L1 -173 6171 6112 480 263 136 10 chr15 30275571 30275769 -55419985 + L1M4 LINE L1 3982 4204 -1942 1144 214 96 33 chr15 30276987 30277352 -55418402 - MLT1B LTR MaLR -2 388 1 420 178 63 1 chr15 30277406 30277518 -55418236 - L1MEc LINE L1 -3275 2940 2821 214 83 0 28 chr15 30277518 30277554 -55418200 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 243 81 103 11 chr15 30277554 30277641 -55418113 + (TTTAA)n Simple_repeat Simple_repeat 5 99 0 209 85 43 21 chr15 30277643 30277690 -55418064 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2066 113 0 11 chr15 30277697 30277981 -55417773 - AluSg SINE Alu -29 281 1 1716 175 0 10 chr15 30277989 30278281 -55417473 - AluJo SINE Alu -18 294 6 2150 223 72 57 chr15 30278291 30278795 -55416959 - L1MEc LINE L1 -3379 2836 2341 2353 104 0 0 chr15 30278795 30279102 -55416652 + AluSx SINE Alu 1 307 -5 2150 223 72 57 chr15 30279102 30279302 -55416452 - L1MEc LINE L1 -3874 2341 2146 1618 111 123 4 chr15 30279302 30279545 -55416209 - AluSx SINE Alu -40 272 1 2150 223 72 57 chr15 30279545 30280054 -55415700 - L1MEc LINE L1 -4069 2146 1623 759 263 95 0 chr15 30280181 30280413 -55415341 - L1MEc LINE L1 -6102 294 41 1355 156 5 18 chr15 30281669 30281887 -55413867 + AluJo SINE Alu 15 229 -83 437 319 8 17 chr15 30283837 30283956 -55411798 - L2 LINE L2 -17 3255 3138 448 272 1 1 chr15 30284606 30284718 -55411036 + MIR SINE MIR 41 151 -68 181 163 0 93 chr15 30285113 30285156 -55410598 + MIR SINE MIR 70 108 -154 615 266 109 13 chr15 30285234 30285463 -55410291 - MIR SINE MIR -10 252 2 351 333 32 26 chr15 30286058 30286214 -55409540 + MIR3 SINE MIR 32 188 -20 2235 114 0 3 chr15 30286231 30286529 -55409225 + AluSx SINE Alu 1 297 -15 216 0 0 0 chr15 30287059 30287083 -55408671 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 711 279 185 9 chr15 30287566 30287906 -55407848 + L2 LINE L2 1853 2252 -1062 816 268 175 39 chr15 30287906 30288141 -55407613 + L2 LINE L2 2606 2808 -505 1621 181 58 0 chr15 30288141 30288296 -55407458 - AluJo SINE Alu -20 292 147 477 0 0 0 chr15 30288296 30288349 -55407405 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 1621 181 58 0 chr15 30288349 30288469 -55407285 - AluJo SINE Alu -165 147 1 816 268 175 39 chr15 30288469 30288868 -55406886 + L2 LINE L2 2808 3312 -1 2040 138 14 0 chr15 30289164 30289461 -55406293 + AluSx SINE Alu 1 301 -11 2221 108 47 36 chr15 30289466 30289826 -55405928 - THE1B LTR MaLR 0 364 1 429 285 19 19 chr15 30290146 30290304 -55405450 - L1ME LINE L1 -336 5785 5628 1728 167 41 0 chr15 30290349 30290643 -55405111 - AluJb SINE Alu -6 306 1 477 355 77 0 chr15 30290979 30291162 -55404592 - L3 LINE CR1 -9 1568 1372 1577 144 76 4 chr15 30291448 30291746 -55404008 - AluSx SINE Alu 0 317 1 877 162 7 7 chr15 30292465 30292607 -55403147 + FRAM SINE Alu 5 146 -30 186 43 0 0 chr15 30292609 30292632 -55403122 + (GAA)n Simple_repeat Simple_repeat 2 24 0 2284 94 0 3 chr15 30292971 30293269 -55402485 + AluY SINE Alu 1 297 -14 81 21 0 0 chr15 30293479 30293574 -55402180 + AT_rich Low_complexity Low_complexity 1 95 0 1066 165 91 135 chr15 30293828 30294235 -55401519 - MLT1B LTR MaLR 0 390 2 771 169 0 0 chr15 30294740 30294858 -55400896 - FLAM_C SINE Alu -15 118 1 870 284 82 3 chr15 30295278 30295529 -55400225 + MIR SINE MIR 1 262 0 2301 102 0 0 chr15 30296450 30296744 -55399010 - AluSx SINE Alu -18 294 1 2243 97 0 0 chr15 30296904 30297192 -55398562 + AluSp SINE Alu 1 288 -25 34 24 0 0 chr15 30297198 30297239 -55398515 + AT_rich Low_complexity Low_complexity 1 41 0 2187 100 0 0 chr15 30297941 30298220 -55397534 - AluSg SINE Alu -27 283 5 2214 110 0 3 chr15 30298507 30298806 -55396948 + AluSg SINE Alu 1 298 -12 2124 122 0 0 chr15 30299029 30299324 -55396430 + AluSx SINE Alu 5 299 -13 2260 102 0 0 chr15 30299655 30299950 -55395804 - AluSq SINE Alu -18 295 1 753 174 15 92 chr15 30300073 30300269 -55395485 - AluSg/x SINE Alu -12 300 120 21 0 0 0 chr15 30300564 30300585 -55395169 + AT_rich Low_complexity Low_complexity 1 21 0 2476 57 7 0 chr15 30300920 30301217 -55394537 - AluY SINE Alu -12 299 1 2132 126 0 59 chr15 30302287 30302645 -55393109 - MER1B DNA MER1_type 0 337 1 22 35 0 0 chr15 30302784 30302813 -55392941 + AT_rich Low_complexity Low_complexity 1 29 0 1908 167 0 7 chr15 30303824 30304130 -55391624 + AluJb SINE Alu 1 304 -8 219 237 105 26 chr15 30305075 30305151 -55390603 + MIR SINE MIR 155 236 -26 30 45 0 0 chr15 30305196 30305240 -55390514 + AT_rich Low_complexity Low_complexity 1 44 0 1751 147 52 3 chr15 30305274 30305560 -55390194 - AluJb SINE Alu -12 300 1 489 250 61 72 chr15 30305961 30306239 -55389515 + MLT1L LTR MaLR 110 448 -167 1831 149 10 0 chr15 30306245 30306540 -55389214 - AluSx SINE Alu -14 298 1 1957 123 0 80 chr15 30306551 30306738 -55389016 - AluSx SINE Alu -12 300 148 2361 76 0 0 chr15 30306738 30307026 -55388728 - AluY SINE Alu -23 288 1 1957 123 0 80 chr15 30307026 30307164 -55388590 - AluSx SINE Alu -164 148 1 333 228 82 82 chr15 30308071 30308183 -55387571 + MLT1L LTR MaLR 450 564 -51 2091 106 34 0 chr15 30308183 30308475 -55387279 - AluSg1 SINE Alu -6 303 2 333 228 82 82 chr15 30308475 30308520 -55387234 + MLT1L LTR MaLR 563 607 -8 207 225 0 0 chr15 30309014 30309054 -55386700 + A-rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr15 30309432 30309461 -55386293 + AT_rich Low_complexity Low_complexity 1 29 0 1604 164 10 40 chr15 30309461 30309759 -55385995 - AluJo SINE Alu -23 289 1 2513 145 8 19 chr15 30309763 30310245 -55385509 - L1MA4 LINE L1 -1 6299 5823 294 29 0 0 chr15 30310785 30310820 -55384934 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1768 116 21 0 chr15 30310820 30311061 -55384693 - AluSx SINE Alu -29 283 38 25 31 0 0 chr15 30311062 30311094 -55384660 + AT_rich Low_complexity Low_complexity 1 32 0 446 73 0 15 chr15 30311193 30311261 -55384493 + (TG)n Simple_repeat Simple_repeat 1 67 0 289 196 36 45 chr15 30311314 30311426 -55384328 + L1ME4a LINE L1 6010 6120 -1 1855 171 7 3 chr15 30311476 30311786 -55383968 - AluJo SINE Alu -1 311 1 2406 54 0 7 chr15 30311833 30312127 -55383627 + AluY SINE Alu 1 292 -19 32 0 0 0 chr15 30312161 30312193 -55383561 + AT_rich Low_complexity Low_complexity 1 32 0 4736 139 33 56 chr15 30312374 30312456 -55383298 + L1MB3 LINE L1 5263 5345 -838 2396 89 0 3 chr15 30312456 30312760 -55382994 + AluSq SINE Alu 1 303 -10 4736 139 33 56 chr15 30312760 30313034 -55382720 + L1MB3 LINE L1 5345 5624 -559 595 268 0 30 chr15 30313034 30313202 -55382552 - FRAM SINE Alu -3 163 1 4736 139 33 56 chr15 30313202 30313785 -55381969 + L1MB3 LINE L1 5624 6181 -2 668 297 95 20 chr15 30314419 30314905 -55380849 + L1ME LINE L1 5256 5794 -327 1039 257 49 2 chr15 30314906 30315315 -55380439 - L1M4 LINE L1 -2905 3241 2814 1002 84 0 0 chr15 30315323 30315454 -55380300 - AluSg/x SINE Alu -5 305 175 1847 168 0 32 chr15 30318814 30319129 -55376625 + AluJo SINE Alu 1 305 -7 518 90 26 0 chr15 30319267 30319345 -55376409 - MADE1 DNA Mariner 0 80 1 290 303 49 49 chr15 30319392 30319514 -55376240 - MIR SINE MIR -71 137 16 247 360 56 32 chr15 30319759 30319884 -55375870 + MIR3 SINE MIR 5 132 -76 566 251 98 27 chr15 30320442 30320625 -55375129 - MIR SINE MIR -26 236 41 22 0 0 0 chr15 30320743 30320765 -55374989 + AT_rich Low_complexity Low_complexity 1 22 0 1886 119 66 6 chr15 30320880 30321198 -55374556 + MER44D DNA MER2_type 1 607 -2 1087 178 0 36 chr15 30321412 30321631 -55374123 + MER46A DNA MER2_type 26 236 0 24 53 0 0 chr15 30321943 30321981 -55373773 + AT_rich Low_complexity Low_complexity 1 38 0 352 176 351 0 chr15 30322297 30322428 -55373326 + MIR SINE MIR 8 184 -78 1121 38 0 0 chr15 30322733 30322865 -55372889 - AluY SINE Alu -179 132 1 5614 143 20 14 chr15 30322869 30323850 -55371904 - L1MA3 LINE L1 0 6305 5319 314 329 134 49 chr15 30324307 30324672 -55371082 + L1MEd LINE L1 445 840 -5279 422 297 65 44 chr15 30324727 30325067 -55370687 + L1MEd LINE L1 900 1246 -4873 189 107 0 0 chr15 30325454 30325482 -55370272 + (T)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr15 30326413 30326435 -55369319 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr15 30326465 30326505 -55369249 + AT_rich Low_complexity Low_complexity 1 40 0 906 140 13 19 chr15 30326567 30326724 -55369030 + FRAM SINE Alu 5 160 -16 313 197 0 0 chr15 30327264 30327335 -55368419 + L1MC3 LINE L1 7715 7785 0 28 29 0 0 chr15 30327498 30327533 -55368221 + AT_rich Low_complexity Low_complexity 1 35 0 2287 170 62 0 chr15 30327866 30328267 -55367487 - MSTB LTR MaLR 0 426 1 940 54 93 266 chr15 30328687 30328853 -55366901 - MER30 DNA MER1_type 0 230 128 2084 121 3 0 chr15 30328853 30329162 -55366592 - AluSx SINE Alu 0 310 1 940 54 93 266 chr15 30329162 30329272 -55366482 - MER30 DNA MER1_type -102 128 1 1847 205 147 15 chr15 30329407 30329732 -55366022 - L1ME2 LINE L1 -194 5970 5689 1040 37 22 0 chr15 30329732 30329867 -55365887 + (AATAG)n Simple_repeat Simple_repeat 1 138 0 1847 205 147 15 chr15 30329867 30330073 -55365681 - L1ME2 LINE L1 -475 5689 5369 502 236 70 0 chr15 30330080 30330237 -55365517 - L1ME2 LINE L1 -904 5242 5075 881 221 39 0 chr15 30330237 30330418 -55365336 - MER20 DNA MER1_type 0 219 32 1440 222 71 40 chr15 30330430 30330874 -55364880 - L1ME2 LINE L1 -1064 5082 4653 1403 214 0 23 chr15 30330874 30331177 -55364577 - AluJo SINE Alu -6 296 1 1440 222 71 40 chr15 30331177 30331477 -55364277 - L1ME2 LINE L1 -1493 4653 4137 438 297 150 65 chr15 30331646 30332399 -55363355 - L2 LINE L2 -36 3236 2440 1651 184 17 3 chr15 30333846 30334139 -55361615 - AluJo SINE Alu -15 297 1 1584 92 64 9 chr15 30334225 30334443 -55361311 - MER30 DNA MER1_type 0 230 1 2042 110 3 60 chr15 30335456 30335775 -55359979 + AluSq SINE Alu 1 301 -12 2261 109 0 0 chr15 30336917 30337211 -55358543 + AluSx SINE Alu 1 294 -18 1805 119 14 58 chr15 30338255 30338571 -55357183 + AluSx SINE Alu 3 305 0 496 276 153 12 chr15 30338752 30338915 -55356839 - MER5A DNA MER1_type 0 189 4 239 261 29 0 chr15 30340706 30340775 -55354979 - L1MC4 LINE L1 -1324 6718 6648 21 0 0 0 chr15 30341530 30341551 -55354203 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 30341877 30341898 -55353856 + AT_rich Low_complexity Low_complexity 1 21 0 2163 106 24 3 chr15 30342567 30342860 -55352894 + AluSq SINE Alu 1 299 -14 265 68 17 102 chr15 30342896 30342955 -55352799 - AluSc SINE Alu 0 299 246 241 269 103 0 chr15 30343130 30343208 -55352546 - L1ME2 LINE L1 -3317 2829 2744 1938 153 0 10 chr15 30343263 30343557 -55352197 + AluJb SINE Alu 1 291 -21 519 259 6 56 chr15 30343557 30343719 -55352035 + LTR16A LTR ERVL 135 288 -162 1447 62 42 21 chr15 30344432 30344625 -55351129 - L1PA6 LINE L1 0 6154 5958 3089 146 37 15 chr15 30344843 30345379 -55350375 - L1MA8 LINE L1 -6 6285 5738 1958 150 7 0 chr15 30345730 30346036 -55349718 + AluSx SINE Alu 1 308 -4 2248 110 3 0 chr15 30346842 30347142 -55348612 - AluSx SINE Alu -11 301 1 1671 219 63 66 chr15 30347612 30347818 -55347936 - L1MC5 LINE L1 -36 7925 7720 3187 175 47 2 chr15 30347818 30348354 -55347400 + MER68 LTR ERV1 1 560 -2 1671 219 63 66 chr15 30348354 30348749 -55347005 - L1MC5 LINE L1 -241 7720 7326 25 75 0 0 chr15 30349359 30349412 -55346342 + AT_rich Low_complexity Low_complexity 1 53 0 4144 173 5 84 chr15 30349412 30349503 -55346251 - L1MB1 LINE L1 -11 6157 6060 1900 141 7 11 chr15 30349503 30349809 -55345945 + AluJo SINE Alu 1 305 0 4144 173 5 84 chr15 30349809 30350670 -55345084 - L1MB1 LINE L1 -108 6060 5279 866 146 7 21 chr15 30350670 30350814 -55344940 - FLAM_C SINE Alu -1 142 1 1415 228 11 11 chr15 30350814 30350944 -55344810 - L1MB1 LINE L1 -857 5289 5160 2288 91 0 3 chr15 30350944 30351240 -55344514 - AluSc SINE Alu -14 295 1 1415 228 11 11 chr15 30351240 30351456 -55344298 - L1MB1 LINE L1 -985 5161 4943 277 262 96 48 chr15 30351710 30351897 -55343857 - L1MC5 LINE L1 -30 7931 7736 2205 127 0 0 chr15 30352781 30353081 -55342673 - AluSx SINE Alu -12 300 1 1803 165 7 7 chr15 30353085 30353388 -55342366 - AluJo SINE Alu -9 303 1 284 186 0 0 chr15 30354029 30354072 -55341682 - L2 LINE L2 -268 3045 3003 546 266 57 17 chr15 30354076 30354253 -55341501 + MIR SINE MIR 5 188 -74 204 287 19 83 chr15 30354318 30354426 -55341328 + L2 LINE L2 3168 3268 -4 180 0 0 0 chr15 30355244 30355264 -55340490 + (T)n Simple_repeat Simple_repeat 1 20 0 843 424 43 56 chr15 30355502 30355804 -55339950 + AluSg SINE Alu 1 298 -2 1038 74 0 15 chr15 30355927 30356062 -55339692 + AluSx SINE Alu 1 133 -179 432 21 0 0 chr15 30356095 30356143 -55339611 - AluSq/x SINE Alu -181 131 84 1138 108 6 0 chr15 30356148 30356305 -55339449 + AluSx SINE Alu 140 297 -13 307 119 0 0 chr15 30358224 30358266 -55337488 - L1MC1 LINE L1 -16 6317 6276 21 0 0 0 chr15 30358289 30358310 -55337444 + AT_rich Low_complexity Low_complexity 1 21 0 215 235 15 59 chr15 30359097 30359165 -55336589 - L2 LINE L2 -4 3309 3245 * 319 320 122 93 chr15 30359145 30359588 -55336166 + L2 LINE L2 2808 3263 -9 271 188 145 0 chr15 30360000 30360069 -55335685 + L2 LINE L2 3233 3311 -2 255 253 194 29 chr15 30360388 30360558 -55335196 + MIR3 SINE MIR 3 200 -8 380 111 63 0 chr15 30360812 30360875 -55334879 - L1MA9 LINE L1 -2 6310 6244 315 211 194 29 chr15 30361236 30361403 -55334351 - L1MC4a LINE L1 -154 5967 5775 3355 131 46 38 chr15 30361416 30361673 -55334081 + Tigger2 DNA MER2_type 1 254 -2464 1964 116 65 0 chr15 30361673 30361949 -55333805 + AluSx SINE Alu 1 294 -18 3355 131 46 38 chr15 30361949 30362277 -55333477 + Tigger2 DNA MER2_type 254 591 -2127 718 111 0 19 chr15 30362276 30362384 -55333370 + Tigger2 DNA MER2_type 965 1070 -1648 * 41772 68 3 5 chr15 30362390 30367795 -55327959 + L1PA5 LINE L1 1 5390 -756 3233 93 16 4 chr15 30367918 30368371 -55327383 + L1PA5 LINE L1 5693 6150 -4 2324 77 0 7 chr15 30368391 30368689 -55327065 + AluY SINE Alu 1 296 -15 622 71 0 0 chr15 30368689 30368773 -55326981 + Tigger2 DNA MER2_type 1067 1150 -1568 1166 233 11 11 chr15 30368780 30369051 -55326703 + AluJb SINE Alu 10 280 -32 3897 114 5 60 chr15 30369075 30369120 -55326634 + Tigger2 DNA MER2_type 1134 1180 -1538 1467 140 103 67 chr15 30369120 30369148 -55326606 - AluJo SINE Alu -1 311 285 396 0 0 0 chr15 30369148 30369192 -55326562 + (TG)n Simple_repeat Simple_repeat 2 45 0 1467 140 103 67 chr15 30369192 30369463 -55326291 - AluJo SINE Alu -27 285 1 3897 114 5 60 chr15 30369463 30369733 -55326021 + Tigger2 DNA MER2_type 1180 1463 -1255 2323 106 0 0 chr15 30369733 30370044 -55325710 - AluSx SINE Alu -1 311 1 3897 114 5 60 chr15 30370044 30370122 -55325632 + Tigger2 DNA MER2_type 1463 1544 -1174 1989 105 7 20 chr15 30370122 30370416 -55325338 - AluSp SINE Alu -23 290 1 3897 114 5 60 chr15 30370416 30370640 -55325114 + Tigger2 DNA MER2_type 1544 1719 -999 2834 53 6 0 chr15 30370752 30371089 -55324665 + L1PA5 LINE L1 5812 6150 -4 2234 91 0 7 chr15 30371109 30371406 -55324348 + AluY SINE Alu 1 295 -16 622 71 0 0 chr15 30371406 30371490 -55324264 + Tigger2 DNA MER2_type 1067 1150 -1568 1615 188 0 4 chr15 30371497 30371769 -55323985 + AluJb SINE Alu 10 280 -32 10304 128 14 27 chr15 30371793 30371838 -55323916 + Tigger2 DNA MER2_type 1134 1178 -1540 1475 140 103 67 chr15 30371838 30371866 -55323888 - AluJo SINE Alu -1 311 285 252 0 0 0 chr15 30371866 30371894 -55323860 + (TG)n Simple_repeat Simple_repeat 2 29 0 1475 140 103 67 chr15 30371894 30372165 -55323589 - AluJo SINE Alu -27 285 1 10304 128 14 27 chr15 30372165 30372435 -55323319 + Tigger2 DNA MER2_type 1178 1450 -1268 2341 104 0 0 chr15 30372435 30372744 -55323010 - AluSx SINE Alu -3 309 1 10304 128 14 27 chr15 30372744 30372822 -55322932 + Tigger2 DNA MER2_type 1450 1527 -1191 2152 85 7 17 chr15 30372822 30373115 -55322639 - AluSp SINE Alu -23 290 1 10304 128 14 27 chr15 30373115 30374324 -55321430 + Tigger2 DNA MER2_type 1527 2718 0 309 281 62 0 chr15 30374373 30374533 -55321221 - L1ME LINE L1 -376 5745 5576 424 296 30 21 chr15 30374626 30374795 -55320959 - L1ME LINE L1 -557 5609 5438 1668 185 0 38 chr15 30374795 30375109 -55320645 - AluJo SINE Alu -10 302 1 424 296 30 21 chr15 30375109 30375162 -55320592 - L1ME LINE L1 -728 5438 5387 676 172 102 16 chr15 30375162 30375290 -55320464 - AluJ SINE Alu -11 301 163 847 167 0 0 chr15 30375291 30375417 -55320337 - AluJ SINE Alu -186 126 1 3424 216 33 12 chr15 30375540 30376670 -55319084 - L1M2 LINE L1 -4334 2516 1082 1039 271 61 80 chr15 30377081 30377747 -55318007 - L1M2 LINE L1 -6218 631 1 931 177 0 0 chr15 30377808 30377955 -55317799 - FRAM SINE Alu -10 166 20 258 328 96 0 chr15 30378678 30378803 -55316951 + L2 LINE L2 2684 2820 -494 428 323 210 32 chr15 30378844 30379258 -55316496 - L2 LINE L2 -5 3267 2783 537 287 92 0 chr15 30379345 30379509 -55316245 - MIR SINE MIR -66 196 18 22 0 0 0 chr15 30379992 30380014 -55315740 + AT_rich Low_complexity Low_complexity 1 22 0 2160 115 7 0 chr15 30380620 30380916 -55314838 - AluSx SINE Alu -14 298 1 21 0 0 0 chr15 30381146 30381167 -55314587 + AT_rich Low_complexity Low_complexity 1 21 0 2423 64 0 10 chr15 30381202 30381500 -55314254 - AluY SINE Alu -16 295 1 2221 105 0 14 chr15 30381505 30381801 -55313953 - AluSg SINE Alu -18 292 1 1933 152 7 3 chr15 30382229 30382526 -55313228 + AluJb SINE Alu 1 298 -14 28 61 0 0 chr15 30382592 30382641 -55313113 + AT_rich Low_complexity Low_complexity 1 49 0 8906 79 6 78 chr15 30382801 30384324 -55311430 + SVA Other Other 12 1386 0 890 107 0 8 chr15 30384343 30384464 -55311290 + AluSg/x SINE Alu 160 279 -30 14307 173 29 25 chr15 30384709 30384834 -55310920 - L1MA4A LINE L1 0 7722 7599 1343 164 25 127 chr15 30384834 30385188 -55310566 - AluYb8 SINE Alu 0 318 1 14307 173 29 25 chr15 30385188 30386042 -55309712 - L1MA4A LINE L1 -123 7599 6749 1747 136 79 4 chr15 30386042 30386322 -55309432 - AluJb SINE Alu -11 301 1 14307 173 29 25 chr15 30386322 30386354 -55309400 - L1MA4A LINE L1 -973 6749 6719 180 0 0 0 chr15 30386354 30386374 -55309380 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 14307 173 29 25 chr15 30386374 30390646 -55305108 - L1MA4A LINE L1 -1003 6719 2428 1152 142 0 0 chr15 30390647 30390809 -55304945 - AluSg/x SINE Alu -15 295 134 3405 164 32 11 chr15 30390809 30391424 -55304330 - L1MA4A LINE L1 -4688 1877 1250 979 291 119 63 chr15 30391518 30392543 -55303211 - L2 LINE L2 0 3272 2185 652 120 0 0 chr15 30392566 30392666 -55303088 + AluJb SINE Alu 205 304 -8 718 195 17 0 chr15 30392707 30392825 -55302929 + AluJo/FLAM SINE Alu 1 120 -182 2015 140 10 7 chr15 30392825 30393125 -55302629 - AluSx SINE Alu -11 301 1 23 33 0 0 chr15 30393132 30393162 -55302592 + AT_rich Low_complexity Low_complexity 1 30 0 480 234 37 0 chr15 30393176 30393283 -55302471 - MIR SINE MIR -16 246 136 687 165 8 16 chr15 30393352 30393473 -55302281 - FLAM_A SINE Alu -13 120 1 1826 180 0 7 chr15 30393497 30393791 -55301963 - AluJb SINE Alu -19 293 2 202 348 14 51 chr15 30393815 30393953 -55301801 - L2 LINE L2 -1151 2163 2031 258 93 0 47 chr15 30394198 30394241 -55301513 - MSTA LTR MaLR 0 428 388 2592 77 0 0 chr15 30394241 30394552 -55301202 + AluSx SINE Alu 1 311 -1 1645 167 152 0 chr15 30394576 30394924 -55300830 - MSTA LTR MaLR -27 401 1 3590 144 62 42 chr15 30394924 30395631 -55300123 - MSTA-int LTR MaLR 0 1580 860 2455 127 0 0 chr15 30395629 30396023 -55299731 - MSTA-int LTR MaLR -1257 394 1 * 1861 156 130 16 chr15 30396023 30396407 -55299347 - MSTA LTR MaLR 0 428 1 8938 166 24 10 chr15 30396407 30398035 -55297719 - MSTA-int LTR MaLR 0 1651 2 2099 148 88 15 chr15 30398036 30398435 -55297319 - MSTA LTR MaLR 0 428 1 397 225 0 45 chr15 30398931 30399020 -55296734 + MIR SINE MIR 30 114 -148 21 57 0 0 chr15 30399370 30399405 -55296349 + AT_rich Low_complexity Low_complexity 1 35 0 1832 124 4 11 chr15 30399511 30399778 -55295976 - AluSx SINE Alu -13 299 35 1966 104 11 0 chr15 30399786 30400046 -55295708 - AluSg SINE Alu -13 297 35 2040 113 30 17 chr15 30400460 30400760 -55294994 + AluY SINE Alu 1 304 -7 300 279 12 12 chr15 30400892 30400978 -55294776 + MIR SINE MIR 171 256 -6 514 336 71 68 chr15 30401642 30402080 -55293674 - L2 LINE L2 -3 3269 2831 227 239 0 0 chr15 30402136 30402182 -55293572 + L1MC5 LINE L1 7843 7888 -73 186 103 0 0 chr15 30402204 30402233 -55293521 + (CA)n Simple_repeat Simple_repeat 2 30 0 2360 115 0 0 chr15 30402978 30403290 -55292464 + AluSx SINE Alu 1 312 0 239 261 65 65 chr15 30404308 30404400 -55291354 - MIR SINE MIR -159 103 12 208 354 115 35 chr15 30404732 30404845 -55290909 + MIR SINE MIR 18 139 -69 298 261 87 11 chr15 30405054 30405146 -55290608 + MIR SINE MIR 55 153 -109 23 33 0 0 chr15 30406219 30406249 -55289505 + AT_rich Low_complexity Low_complexity 1 30 0 222 261 216 27 chr15 30406714 30406825 -55288929 + L2 LINE L2 2326 2457 -857 264 297 132 39 chr15 30406835 30407017 -55288737 - MIR SINE MIR -12 250 52 1572 171 6 89 chr15 30407927 30408254 -55287500 + AluJo SINE Alu 1 300 -12 310 308 77 8 chr15 30408412 30408542 -55287212 + L2 LINE L2 3163 3301 -12 519 115 10 77 chr15 30409022 30409126 -55286628 + FLAM_A SINE Alu 46 142 0 244 140 50 120 chr15 30409131 30409231 -55286523 + MER94 DNA DNA 15 107 -27 285 403 16 0 chr15 30409427 30409551 -55286203 - L2 LINE L2 -9 3263 3138 350 315 74 31 chr15 30409595 30409757 -55285997 + L2 LINE L2 2882 3050 -222 365 234 25 108 chr15 30409856 30409904 -55285850 - MIR SINE MIR 0 262 212 2170 120 0 7 chr15 30409904 30410205 -55285549 - AluSp SINE Alu -14 299 1 365 234 25 108 chr15 30410205 30410314 -55285440 - MIR SINE MIR -50 212 118 260 260 104 31 chr15 30410699 30410795 -55284959 + MIR3 SINE MIR 92 194 -14 219 88 0 0 chr15 30411183 30411217 -55284537 + (A)n Simple_repeat Simple_repeat 1 34 0 362 254 216 16 chr15 30411225 30411393 -55284361 - MIR3 SINE MIR -8 200 2 2543 47 0 0 chr15 30411741 30412040 -55283714 + AluY SINE Alu 1 299 -12 1428 161 12 28 chr15 30412884 30413132 -55282622 - AluJo SINE Alu -22 290 47 483 304 71 27 chr15 30413641 30413865 -55281889 - MIR SINE MIR -22 240 7 1571 185 22 0 chr15 30413919 30414189 -55281565 + AluJo SINE Alu 7 282 -30 1543 146 19 4 chr15 30414263 30414524 -55281230 + L1PA16 LINE L1 5893 6157 -9 388 267 108 59 chr15 30414847 30415003 -55280751 + L1ME4a LINE L1 5601 5748 -373 333 156 0 0 chr15 30415003 30415067 -55280687 + L1MB3 LINE L1 6118 6181 -2 388 267 108 59 chr15 30415067 30415281 -55280473 + L1ME4a LINE L1 5748 5989 -132 222 320 107 0 chr15 30415605 30415680 -55280074 + L2 LINE L2 3185 3267 -5 228 309 111 24 chr15 30415726 30415852 -55279902 - MIR SINE MIR -60 202 66 716 313 129 30 chr15 30415926 30416360 -55279394 - L2 LINE L2 -5 3308 2832 339 321 16 32 chr15 30416651 30416789 -55278965 + L1MC4 LINE L1 7695 7831 -211 849 226 77 0 chr15 30416789 30416984 -55278770 + MER63A DNA MER1_type 1 210 0 339 321 16 32 chr15 30416984 30417032 -55278722 + L1MC4 LINE L1 7831 7878 -164 4829 140 32 24 chr15 30417032 30417956 -55277798 + L1MA6 LINE L1 5364 6295 -5 307 247 86 0 chr15 30418067 30418160 -55277594 + L1MC4 LINE L1 7925 8025 -17 2261 61 0 51 chr15 30418160 30418473 -55277281 - AluY SINE Alu -14 297 1 21 0 0 0 chr15 30418475 30418496 -55277258 + AT_rich Low_complexity Low_complexity 1 21 0 287 369 92 14 chr15 30419541 30419758 -55275996 - MIR SINE MIR -12 250 17 661 292 79 86 chr15 30420685 30421151 -55274603 - L2 LINE L2 0 3313 2851 1665 178 0 59 chr15 30421307 30421628 -55274126 + AluJo SINE Alu 1 302 -10 674 186 55 7 chr15 30422384 30422529 -55273225 - MIR SINE MIR -27 235 84 905 253 30 5 chr15 30422660 30422862 -55272892 + MIR SINE MIR 53 259 -3 772 147 0 29 chr15 30423474 30423610 -55272144 - FLAM_C SINE Alu -11 132 1 22 0 0 0 chr15 30423908 30423930 -55271824 + AT_rich Low_complexity Low_complexity 1 22 0 347 270 225 17 chr15 30424164 30424342 -55271412 - MIR SINE MIR -1 261 47 2523 46 7 0 chr15 30424886 30425193 -55270561 + AluY SINE Alu 1 309 -2 507 220 118 21 chr15 30425564 30425750 -55270004 - MER112 DNA MER1_type -9 251 48 26 0 0 0 chr15 30426384 30426410 -55269344 + AT_rich Low_complexity Low_complexity 1 26 0 244 310 46 23 chr15 30426442 30426529 -55269225 - L3 LINE CR1 -5 1572 1484 431 278 166 71 chr15 30428333 30428786 -55266968 + L1M2 LINE L1 658 1153 -5696 620 58 0 12 chr15 30429015 30429101 -55266653 + (TCC)n Simple_repeat Simple_repeat 1 85 0 313 301 44 35 chr15 30430535 30430648 -55265106 - L2 LINE L2 -5 3267 3154 387 276 48 0 chr15 30431204 30431309 -55264445 + L2 LINE L2 3188 3297 -16 422 160 103 117 chr15 30431513 30431726 -55264028 + MLT1B LTR MaLR 3 212 -178 349 252 230 14 chr15 30432442 30432581 -55263173 - MIR SINE MIR -32 230 62 265 301 39 0 chr15 30432579 30432682 -55263072 - MIR SINE MIR -53 209 103 * 700 284 105 13 chr15 30432818 30433057 -55262697 - MIR SINE MIR 0 262 2 559 161 93 0 chr15 30433390 30433508 -55262246 + MER3 DNA MER1_type 41 122 -87 1686 192 3 10 chr15 30433512 30433814 -55261940 + AluJo SINE Alu 1 300 -12 241 129 100 14 chr15 30433814 30433884 -55261870 + MER3 DNA MER1_type 2230 2305 0 269 59 0 0 chr15 30433886 30433920 -55261834 - U2 snRNA snRNA -153 35 2 * 311 132 0 0 chr15 30433916 30433969 -55261785 + MER3 DNA MER1_type 2291 2343 0 195 42 0 0 chr15 30433969 30433993 -55261761 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 582 197 21 70 chr15 30433994 30434136 -55261618 - AluJo SINE Alu -177 135 1 743 160 194 13 chr15 30434137 30434374 -55261380 + MER3 DNA MER1_type 2334 2613 0 228 35 0 0 chr15 30434679 30434708 -55261046 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1709 169 0 4 chr15 30434710 30434976 -55260778 - AluJb SINE Alu -29 283 19 1342 160 20 75 chr15 30434975 30435281 -55260473 - AluJo SINE Alu -19 293 5 * 601 207 0 17 chr15 30435984 30436100 -55259654 - FLAM_A SINE Alu -19 114 1 311 320 88 16 chr15 30436255 30436380 -55259374 - L2 LINE L2 -18 3254 3121 2152 78 0 0 chr15 30436383 30436687 -55259067 + AluY SINE Alu 1 304 0 619 268 65 42 chr15 30437028 30437289 -55258465 + MLT1H LTR MaLR 33 299 -250 278 233 96 0 chr15 30437344 30437417 -55258337 + MLT1H LTR MaLR 454 533 -16 401 315 116 68 chr15 30437549 30438016 -55257738 - L2 LINE L2 -638 2676 2188 299 312 0 11 chr15 30438037 30438130 -55257624 - L2 LINE L2 -1315 1999 1908 406 311 30 15 chr15 30439461 30439596 -55256158 - L2 LINE L2 0 3272 3136 994 247 110 77 chr15 30440064 30440759 -55254995 + L2 LINE L2 2585 3309 -4 191 326 98 23 chr15 30440841 30440973 -55254781 - L2 LINE L2 -970 2344 2203 2020 161 0 13 chr15 30441043 30441359 -55254395 + AluSx SINE Alu 1 312 0 24 0 0 0 chr15 30441415 30441439 -55254315 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr15 30441590 30441612 -55254142 + AT_rich Low_complexity Low_complexity 1 22 0 590 165 136 0 chr15 30441612 30441715 -55254039 - FLAM_C SINE Alu -25 118 2 2273 105 7 0 chr15 30441803 30442099 -55253655 + AluSp SINE Alu 1 298 -15 210 71 0 0 chr15 30442118 30442146 -55253608 + (CA)n Simple_repeat Simple_repeat 2 29 0 247 254 235 19 chr15 30442490 30442813 -55252941 - L1M4 LINE L1 -1488 4658 4266 2180 125 0 0 chr15 30442841 30443130 -55252624 - AluSx SINE Alu -23 289 1 304 300 52 77 chr15 30443217 30443318 -55252436 - L1M4 LINE L1 -2063 4083 3981 1453 201 35 0 chr15 30443318 30443601 -55252153 + AluJo SINE Alu 2 294 -18 304 300 52 77 chr15 30443601 30443614 -55252140 - L1M4 LINE L1 -2165 3981 3969 1795 177 11 0 chr15 30443614 30443897 -55251857 + AluJb SINE Alu 1 286 -26 304 300 52 77 chr15 30443897 30444394 -55251360 - L1M4 LINE L1 -2177 3969 3489 1664 167 4 0 chr15 30444394 30444678 -55251076 - AluJb SINE Alu 0 312 38 304 300 52 77 chr15 30444678 30444794 -55250960 - L1M4 LINE L1 -2657 3489 3372 1018 229 50 46 chr15 30445906 30446134 -55249620 - L1ME LINE L1 -413 5751 5525 2264 103 0 10 chr15 30446134 30446445 -55249309 + AluY SINE Alu 4 311 0 1018 229 50 46 chr15 30446445 30446758 -55248996 - L1ME LINE L1 -639 5525 5210 452 295 81 79 chr15 30447175 30447454 -55248300 - L2 LINE L2 -346 2968 2686 1307 178 129 75 chr15 30447454 30447936 -55247818 - Charlie4a DNA MER1_type 0 508 1 452 295 81 79 chr15 30447936 30448086 -55247668 - L2 LINE L2 -628 2686 2538 199 329 103 13 chr15 30450055 30450210 -55245544 + MIR3 SINE MIR 30 198 -10 2079 58 0 15 chr15 30450894 30451155 -55244599 + AluY SINE Alu 39 295 -16 301 309 166 40 chr15 30451764 30451939 -55243815 - MIR SINE MIR -19 243 47 2120 108 29 10 chr15 30452258 30452564 -55243190 - AluSx SINE Alu 0 312 1 259 187 80 40 chr15 30453036 30453111 -55242643 + MER5A DNA MER1_type 35 112 -77 713 164 30 8 chr15 30453157 30453291 -55242463 - MER3 DNA MER1_type -71 138 2 2572 121 39 98 chr15 30453306 30453414 -55242340 - Tigger1 DNA MER2_type -4 2414 2301 1820 119 27 4 chr15 30453414 30453674 -55242080 + AluSq SINE Alu 22 287 -26 2572 121 39 98 chr15 30453674 30453778 -55241976 - Tigger1 DNA MER2_type -117 2301 2192 833 207 181 71 chr15 30453778 30454044 -55241710 + AluJo SINE Alu 1 295 -7 2572 121 39 98 chr15 30454044 30454392 -55241362 - Tigger1 DNA MER2_type -226 2192 1886 2494 166 266 31 chr15 30454394 30454983 -55240771 + L1MA4 LINE L1 4347 4797 -1349 2356 108 0 0 chr15 30454983 30455289 -55240465 + AluSx SINE Alu 1 306 -6 2494 166 266 31 chr15 30455289 30455524 -55240230 + L1MA4 LINE L1 4797 5364 -782 1822 152 23 23 chr15 30455525 30455835 -55239919 + AluSx SINE Alu 1 310 -2 1765 127 88 14 chr15 30455846 30456129 -55239625 + AluSx SINE Alu 1 304 -8 2259 111 19 3 chr15 30456129 30456499 -55239255 + L1MA4 LINE L1 5665 6040 -260 8780 118 21 3 chr15 30456508 30456941 -55238813 - Tigger1 DNA MER2_type -527 1891 1467 1811 132 0 8 chr15 30456941 30457206 -55238548 + AluSx SINE Alu 33 295 -17 8780 118 21 3 chr15 30457206 30458159 -55237595 - Tigger1 DNA MER2_type -951 1467 480 985 136 7 0 chr15 30458209 30458349 -55237405 - AluJb SINE Alu -171 141 1 2799 144 23 0 chr15 30458349 30458829 -55236925 - Tigger1 DNA MER2_type -1926 492 2 1871 125 6 87 chr15 30458857 30458992 -55236762 + AluSx SINE Alu 3 147 -165 2093 109 14 3 chr15 30458992 30459275 -55236479 - AluSq SINE Alu -27 286 1 1871 125 6 87 chr15 30459275 30459460 -55236294 + AluSx SINE Alu 147 297 -15 311 252 213 26 chr15 30459491 30459646 -55236108 - L2 LINE L2 -1144 2170 1987 2155 122 0 7 chr15 30459877 30460181 -55235573 + AluSx SINE Alu 1 302 -10 816 153 15 0 chr15 30460182 30460313 -55235441 - AluJo/FLAM SINE Alu -169 133 1 232 314 33 25 chr15 30460960 30461081 -55234673 - L2 LINE L2 -1354 1960 1839 1385 137 53 26 chr15 30464034 30464153 -55231601 + AluJo SINE Alu 1 115 -197 216 0 0 0 chr15 30464153 30464177 -55231577 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1385 137 53 26 chr15 30464177 30464283 -55231471 + AluJo SINE Alu 115 232 -80 28 0 0 0 chr15 30464284 30464312 -55231442 + AT_rich Low_complexity Low_complexity 1 28 0 1994 159 0 0 chr15 30464317 30464613 -55231141 + AluSx SINE Alu 7 302 -10 2262 94 0 3 chr15 30464616 30464914 -55230840 + AluSg SINE Alu 1 297 -13 1343 134 94 43 chr15 30465455 30465731 -55230023 + AluJo SINE Alu 11 300 -12 826 179 13 0 chr15 30466344 30466495 -55229259 - FRAM SINE Alu -16 160 8 182 327 0 18 chr15 30466814 30466869 -55228885 - L2 LINE L2 -1 3271 3218 2187 90 0 27 chr15 30467603 30467904 -55227850 + AluSg SINE Alu 8 300 -10 571 211 0 75 chr15 30468168 30468315 -55227439 - AluJo SINE Alu -104 208 73 362 253 248 11 chr15 30468329 30468696 -55227058 - L1M4 LINE L1 -3234 2912 2459 958 117 0 0 chr15 30468697 30468834 -55226920 + FLAM_C SINE Alu 6 142 -1 23 0 0 0 chr15 30469096 30469119 -55226635 + AT_rich Low_complexity Low_complexity 1 23 0 725 94 9 0 chr15 30470473 30470579 -55225175 + AluSq/x SINE Alu 1 107 -205 598 191 0 9 chr15 30471805 30471915 -55223839 + FLAM_C SINE Alu 1 109 -34 21 57 0 0 chr15 30471968 30472003 -55223751 + AT_rich Low_complexity Low_complexity 1 35 0 1518 206 9 37 chr15 30472280 30472601 -55223153 - AluJb SINE Alu 0 312 1 818 141 22 30 chr15 30472894 30473029 -55222725 + AluJo SINE Alu 1 134 -178 23 0 0 0 chr15 30473029 30473052 -55222702 + AT_rich Low_complexity Low_complexity 1 23 0 206 299 139 73 chr15 30475723 30475860 -55219894 + MIR3 SINE MIR 33 178 -30 22 0 0 0 chr15 30476213 30476235 -55219519 + AT_rich Low_complexity Low_complexity 1 22 0 262 194 15 75 chr15 30477217 30477284 -55218470 + L2 LINE L2 3190 3252 -20 2101 119 0 23 chr15 30477684 30477986 -55217768 - AluSx SINE Alu -17 295 1 22 0 0 0 chr15 30477996 30478018 -55217736 + AT_rich Low_complexity Low_complexity 1 22 0 1804 146 19 56 chr15 30478164 30478486 -55217268 - AluSx SINE Alu -2 310 1 534 208 20 0 chr15 30480138 30480239 -55215515 - FRAM SINE Alu -11 165 63 644 141 0 0 chr15 30482020 30482119 -55213635 - Tigger7 DNA MER2_type 0 2491 2393 * 1265 155 49 38 chr15 30482117 30482260 -55213494 - Tigger7 DNA MER2_type -466 267 118 2416 87 10 0 chr15 30482260 30482569 -55213185 - AluSq SINE Alu -1 312 1 1265 155 49 38 chr15 30482569 30482689 -55213065 - Tigger7 DNA MER2_type -615 118 1 239 29 57 0 chr15 30483395 30483430 -55212324 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 4939 205 45 11 chr15 30483761 30484851 -55210903 + L1M2 LINE L1 718 1844 -5722 2648 210 63 16 chr15 30484857 30485354 -55210400 + L1M2 LINE L1 3501 4057 -3508 2030 138 7 0 chr15 30485354 30485650 -55210104 + AluSx SINE Alu 11 308 -4 2648 210 63 16 chr15 30485650 30485991 -55209763 + L1M2 LINE L1 4057 4381 -3184 1748 166 0 14 chr15 30485991 30486287 -55209467 + AluJb SINE Alu 1 292 -20 2232 90 7 35 chr15 30486288 30486598 -55209156 + AluSq SINE Alu 12 312 -1 862 195 13 5 chr15 30486620 30486833 -55208921 + L1M2 LINE L1 4315 4539 -3026 1612 158 0 103 chr15 30486833 30486999 -55208755 + AluJb SINE Alu 1 118 -184 2197 108 0 3 chr15 30486999 30487294 -55208460 + AluSx SINE Alu 16 309 -3 1612 158 0 103 chr15 30487294 30487456 -55208298 + AluJb SINE Alu 118 295 -7 241 234 26 0 chr15 30488172 30488249 -55207505 - HAL1 LINE L1 -136 2371 2293 1407 179 10 50 chr15 30488272 30488573 -55207181 + AluJo SINE Alu 1 289 -23 29 0 0 0 chr15 30488579 30488608 -55207146 + AT_rich Low_complexity Low_complexity 1 29 0 324 289 64 45 chr15 30488770 30488926 -55206828 - HAL1b LINE L1 -444 904 746 913 141 109 16 chr15 30488983 30489167 -55206587 + THE1C LTR MaLR 175 375 0 10186 101 46 44 chr15 30489167 30489216 -55206538 + THE1C-int LTR MaLR 1 48 -1532 2355 60 10 23 chr15 30489216 30489516 -55206238 + AluY SINE Alu 1 296 -15 10186 101 46 44 chr15 30489516 30491044 -55204710 + THE1C-int LTR MaLR 48 1580 0 1999 135 58 25 chr15 30491044 30491407 -55204347 + THE1C LTR MaLR 1 375 0 2391 99 7 0 chr15 30491464 30491767 -55203987 - AluSp SINE Alu -8 305 1 2101 138 32 40 chr15 30491928 30492306 -55203448 - THE1C LTR MaLR 0 375 1 1817 135 4 8 chr15 30492818 30493084 -55202670 + AluJb SINE Alu 10 274 -38 297 316 53 45 chr15 30493138 30493271 -55202483 - LTR67 LTR ERVL -71 486 353 249 309 79 32 chr15 30493444 30493570 -55202184 - LTR67 LTR ERVL -384 173 42 2656 33 3 3 chr15 30493700 30494000 -55201754 + AluY SINE Alu 1 300 -11 2167 110 0 26 chr15 30494297 30494607 -55201147 + AluSg SINE Alu 1 302 -8 2344 98 0 25 chr15 30494738 30495056 -55200698 - AluSg SINE Alu 0 310 1 3249 143 53 45 chr15 30495088 30495711 -55200043 + L1MC3 LINE L1 6455 7082 -703 236 277 12 12 chr15 30495712 30495795 -55199959 + MLT1F1 LTR MaLR 26 108 -459 2191 129 29 15 chr15 30495843 30496183 -55199571 - MLT1B LTR MaLR -45 345 1 2698 122 63 98 chr15 30496197 30496327 -55199427 + L1MC3 LINE L1 7210 7343 -442 1718 196 0 3 chr15 30496327 30496628 -55199126 + AluJb SINE Alu 12 311 -1 2698 122 63 98 chr15 30496628 30497080 -55198674 + L1MC3 LINE L1 7343 7772 -13 288 0 0 0 chr15 30497080 30497112 -55198642 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2050 144 0 16 chr15 30497558 30497863 -55197891 + AluSx SINE Alu 1 300 -12 182 341 91 0 chr15 30498460 30498548 -55197206 + L2 LINE L2 3157 3252 -20 441 270 104 4 chr15 30498570 30498641 -55197113 + L2 LINE L2 3052 3115 -198 2113 165 45 55 chr15 30498641 30499113 -55196641 + MLT1C LTR MaLR 1 467 0 441 270 104 4 chr15 30499113 30499271 -55196483 + L2 LINE L2 3114 3304 -9 2058 130 0 0 chr15 30499605 30499889 -55195865 + AluSx SINE Alu 1 284 -28 219 114 0 0 chr15 30500662 30500697 -55195057 + (CAA)n Simple_repeat Simple_repeat 2 36 0 267 192 0 0 chr15 30501643 30501716 -55194038 + (CGG)n Simple_repeat Simple_repeat 2 74 0 296 133 17 0 chr15 30501810 30501870 -55193884 + (CCCCG)n Simple_repeat Simple_repeat 4 64 0 381 202 114 29 chr15 30503033 30503204 -55192550 + MIR SINE MIR 17 198 -64 425 216 18 27 chr15 30503429 30503540 -55192214 - MIR SINE MIR 0 262 153 1399 83 69 28 chr15 30503632 30503850 -55191904 - MER30 DNA MER1_type 0 230 4 1040 148 4 109 chr15 30504068 30504120 -55191634 + AluJb SINE Alu 86 142 -170 2004 93 67 0 chr15 30504120 30504411 -55191343 + AluSp SINE Alu 1 309 0 1040 148 4 109 chr15 30504411 30504587 -55191167 + AluJb SINE Alu 142 291 -21 293 317 59 20 chr15 30504760 30504861 -55190893 - L2 LINE L2 -15 3257 3153 538 130 10 0 chr15 30505456 30505556 -55190198 - L1MB7 LINE L1 0 6184 6084 1794 156 36 7 chr15 30505878 30506179 -55189575 - AluJo SINE Alu -2 310 1 360 0 0 0 chr15 30506182 30506222 -55189532 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1593 216 0 0 chr15 30506226 30506504 -55189250 - AluJb SINE Alu -34 278 1 26 30 0 0 chr15 30506504 30506537 -55189217 + AT_rich Low_complexity Low_complexity 1 33 0 326 211 172 8 chr15 30507212 30507340 -55188414 + L2 LINE L2 3161 3309 -4 24 0 0 0 chr15 30507917 30507941 -55187813 + AT_rich Low_complexity Low_complexity 1 24 0 809 152 62 0 chr15 30508423 30508584 -55187170 - L1ME1 LINE L1 -5 6161 6000 2264 107 0 0 chr15 30509530 30509828 -55185926 - AluSg SINE Alu -12 298 1 487 274 162 25 chr15 30510105 30510346 -55185408 - MLT1K LTR MaLR -2 586 313 2336 89 0 3 chr15 30510746 30511037 -55184717 + AluSg SINE Alu 1 290 -20 1667 189 7 3 chr15 30511131 30511445 -55184309 - AluJo SINE Alu 0 315 1 816 189 15 102 chr15 30512443 30512649 -55183105 - MER20 DNA MER1_type 0 219 32 363 220 231 83 chr15 30512799 30513058 -55182696 - L1ME4a LINE L1 0 6121 5902 2011 105 0 82 chr15 30513058 30513373 -55182381 - AluSq SINE Alu -24 289 1 363 220 231 83 chr15 30513373 30513499 -55182255 - L1ME4a LINE L1 -219 5902 5679 237 288 0 0 chr15 30514438 30514497 -55181257 - MIR SINE MIR 0 262 204 760 257 27 27 chr15 30514552 30514813 -55180941 + MIR SINE MIR 2 262 0 324 308 173 13 chr15 30514835 30515153 -55180601 + L2 LINE L2 2046 2414 -900 * 674 199 96 0 chr15 30515146 30515292 -55180462 + MIR SINE MIR 102 261 -1 196 312 46 18 chr15 30515310 30515419 -55180335 + L2 LINE L2 2395 2506 -808 1939 151 13 10 chr15 30515468 30515779 -55179975 - AluJo SINE Alu 0 312 1 469 227 200 0 chr15 30515972 30516122 -55179632 - MER5A DNA MER1_type -1 188 9 359 171 14 0 chr15 30516465 30516535 -55179219 - L1MB8 LINE L1 -4 6174 6104 1388 104 0 31 chr15 30517044 30517236 -55178518 + AluSx SINE Alu 1 186 -126 1251 263 10 13 chr15 30517452 30517760 -55177994 + AluSx SINE Alu 3 309 -3 6083 59 13 12 chr15 30518747 30519526 -55176228 - LTR17 LTR ERV1 0 780 1 2299 118 0 0 chr15 30520402 30520706 -55175048 - AluSx SINE Alu -8 304 1 667 286 100 46 chr15 30521285 30521676 -55174078 - L2 LINE L2 -5 3308 2897 2121 107 3 41 chr15 30521789 30522106 -55173648 + AluSq SINE Alu 1 305 -8 2332 87 0 35 chr15 30522442 30522753 -55173001 + AluSc SINE Alu 1 300 -9 877 244 127 13 chr15 30523265 30523572 -55172182 - Tigger8 DNA MER2_type -84 582 241 2450 91 0 0 chr15 30523721 30524029 -55171725 + AluSg SINE Alu 1 308 -2 2343 109 0 6 chr15 30524297 30524608 -55171146 + AluSq SINE Alu 1 309 -4 482 277 43 62 chr15 30525322 30525578 -55170176 - MIR SINE MIR -10 252 2 2107 200 98 56 chr15 30525591 30526049 -55169705 - L1MD3 LINE L1 -516 7292 6801 1587 141 115 7 chr15 30526049 30526318 -55169436 - AluJo SINE Alu -14 298 1 2107 200 98 56 chr15 30526318 30526560 -55169194 - L1MD3 LINE L1 -1007 6801 6571 238 183 33 17 chr15 30526587 30526647 -55169107 + (TATG)n Simple_repeat Simple_repeat 3 63 0 677 179 0 8 chr15 30526652 30526769 -55168985 - FLAM_C SINE Alu -21 122 7 2394 116 0 0 chr15 30526774 30527084 -55168670 - AluSx SINE Alu -2 310 1 621 254 136 30 chr15 30527104 30527340 -55168414 - L1MC4a LINE L1 -1212 6596 6336 761 121 9 9 chr15 30528140 30528256 -55167498 + FLAM_C SINE Alu 11 126 -17 761 128 0 0 chr15 30528309 30528455 -55167299 - AluSg/x SINE Alu 0 318 173 562 177 23 31 chr15 30529040 30529170 -55166584 - AluYb8 SINE Alu -188 130 2 21 0 0 0 chr15 30529482 30529503 -55166251 + AT_rich Low_complexity Low_complexity 1 21 0 2525 57 7 0 chr15 30529838 30530135 -55165619 - AluY SINE Alu -12 299 1 2063 134 3 64 chr15 30531206 30531565 -55164189 - MER1B DNA MER1_type 0 337 1 21 67 0 0 chr15 30531704 30531734 -55164020 + AT_rich Low_complexity Low_complexity 1 30 0 577 191 9 0 chr15 30532749 30532854 -55162900 + FLAM_C SINE Alu 2 107 -36 843 264 104 47 chr15 30533058 30533774 -55161980 - L1ME3A LINE L1 -149 6021 5176 2256 113 0 7 chr15 30534267 30534577 -55161177 - AluSg SINE Alu -2 308 1 1570 160 42 0 chr15 30534607 30534895 -55160859 + L1MC1 LINE L1 6016 6315 -18 524 300 38 9 chr15 30537219 30537429 -55158325 + L1ME1 LINE L1 4487 4702 -1444 1133 182 161 4 chr15 30537582 30537824 -55157930 + AluSg SINE Alu 1 280 -30 350 300 97 6 chr15 30537899 30538229 -55157525 + L1ME1 LINE L1 4922 5281 -865 557 172 0 0 chr15 30538247 30538334 -55157420 + FLAM SINE Alu 45 131 -12 2233 118 42 27 chr15 30538340 30538736 -55157018 + L1PA16 LINE L1 5328 5734 -432 2873 115 24 5 chr15 30538857 30539275 -55156479 + L1PA16 LINE L1 5738 6163 -3 1559 234 42 26 chr15 30539279 30539825 -55155929 + L1ME1 LINE L1 5287 6062 -104 479 209 157 0 chr15 30539887 30540002 -55155752 + L1MC4a LINE L1 5383 5515 -2293 1255 231 88 30 chr15 30540004 30540180 -55155574 + L1MC4a LINE L1 5557 5721 -2087 1502 49 0 27 chr15 30540180 30540365 -55155389 + L1PA6 LINE L1 5973 6152 -2 1255 231 88 30 chr15 30540365 30540629 -55155125 + L1MC4a LINE L1 5721 6023 -1785 7791 43 3 1 chr15 30540630 30542025 -55153729 + L1PA6 LINE L1 4757 6154 0 1083 230 98 62 chr15 30542095 30542543 -55153211 - L1ME3 LINE L1 -1 6161 5698 1834 250 107 63 chr15 30542556 30544167 -55151587 + L1MB8 LINE L1 5782 6178 0 * 1953 233 174 18 chr15 30543549 30544273 -55151481 + L1MC4 LINE L1 7064 7900 -142 258 211 0 0 chr15 30545433 30545490 -55150264 - MER102b DNA MER1_type -6 324 268 203 189 0 0 chr15 30545578 30545615 -55150139 + A-rich Low_complexity Low_complexity 1 37 0 744 253 95 55 chr15 30546925 30547413 -55148341 + L2 LINE L2 2795 3313 0 320 292 78 32 chr15 30547420 30547574 -55148180 - L2 LINE L2 0 3313 3153 352 180 34 34 chr15 30548076 30548165 -55147589 + MER102b DNA MER1_type 253 341 0 559 139 13 0 chr15 30548427 30548506 -55147248 - AluSg/x SINE Alu -15 297 218 1305 202 112 16 chr15 30548540 30548993 -55146761 - MLT1G3 LTR MaLR -4 526 1 539 261 92 16 chr15 30548997 30549181 -55146573 - MARNA DNA Mariner -246 340 143 388 214 29 0 chr15 30549911 30549981 -55145773 - MIR3 SINE MIR -22 186 115 472 262 55 69 chr15 30550123 30550325 -55145429 + MIR SINE MIR 18 216 -46 2341 89 0 49 chr15 30550593 30550919 -55144835 + AluY SINE Alu 1 310 -1 1068 256 85 98 chr15 30551043 30551163 -55144591 - MER115 DNA AcHobo 0 4031 3911 2001 125 7 33 chr15 30551163 30551467 -55144287 - AluSx SINE Alu -14 298 3 1068 256 85 98 chr15 30551467 30552053 -55143701 - MER115 DNA AcHobo -120 3911 3 848 188 0 0 chr15 30552436 30552569 -55143185 + FLAM_C SINE Alu 1 133 0 2048 146 7 0 chr15 30552754 30553063 -55142691 - AluSx SINE Alu -1 311 1 1865 120 78 0 chr15 30553832 30554116 -55141638 + AluSx SINE Alu 1 306 -6 2290 104 3 0 chr15 30555410 30555719 -55140035 - AluY SINE Alu -1 310 1 200 227 30 15 chr15 30555909 30555975 -55139779 - L2 LINE L2 -1357 1957 1891 1063 184 5 10 chr15 30556783 30556979 -55138775 + AluJo SINE Alu 118 312 0 1111 237 12 8 chr15 30559158 30559403 -55136351 - MIR SINE MIR -3 259 14 222 37 0 0 chr15 30560243 30560270 -55135484 + (T)n Simple_repeat Simple_repeat 1 27 0 981 217 219 19 chr15 30560469 30561036 -55134718 + Charlie7 DNA MER1_type 1918 2597 -15 2941 94 3 0 chr15 30561279 30561642 -55134112 + THE1B LTR MaLR 1 364 0 1355 249 60 30 chr15 30561904 30562100 -55133654 + LTR16C LTR ERVL 2 191 -300 3956 102 0 4 chr15 30562100 30562611 -55133143 - MER9 LTR ERVK 0 511 3 1355 249 60 30 chr15 30562611 30562844 -55132910 + LTR16C LTR ERVL 191 444 -47 580 282 68 70 chr15 30562876 30563540 -55132214 - L1MEd LINE L1 -4668 1463 799 945 150 0 0 chr15 30563540 30563673 -55132081 - FLAM_C SINE Alu 0 133 1 580 282 68 70 chr15 30563673 30563854 -55131900 - L1MEd LINE L1 -5332 799 717 1887 121 54 0 chr15 30563854 30564134 -55131620 - AluJo SINE Alu -15 297 3 580 282 68 70 chr15 30564134 30564294 -55131460 - L1MEd LINE L1 -5414 717 558 1852 215 26 16 chr15 30564370 30564756 -55130998 + MLT1B LTR MaLR 1 390 0 379 285 85 35 chr15 30564782 30564982 -55130772 - L1MEd LINE L1 -5898 221 12 2197 107 20 0 chr15 30565144 30565444 -55130310 + AluSx SINE Alu 1 306 -6 838 99 0 0 chr15 30566238 30566349 -55129405 - AluSc SINE Alu -9 300 190 730 197 0 0 chr15 30567907 30568024 -55127730 - FLAM_C SINE Alu -16 117 1 1304 178 171 4 chr15 30568201 30568459 -55127295 + AluJo SINE Alu 2 302 0 340 318 82 15 chr15 30569455 30569785 -55125969 + L1MC5 LINE L1 7312 7663 -298 198 0 0 0 chr15 30570274 30570296 -55125458 + (A)n Simple_repeat Simple_repeat 1 22 0 1480 168 93 4 chr15 30571390 30571670 -55124084 + AluJo SINE Alu 4 308 -4 952 165 18 24 chr15 30571823 30571993 -55123761 + AluJo SINE Alu 118 286 -26 1190 250 37 18 chr15 30572691 30573019 -55122735 - L1MD3 LINE L1 -9 7986 7653 991 117 62 19 chr15 30573020 30573182 -55122572 - AluJb SINE Alu -3 309 141 2458 120 30 8 chr15 30573185 30573552 -55122202 + THE1C LTR MaLR 1 375 0 252 122 0 0 chr15 30573553 30573602 -55122152 + LTR66 LTR ERVL 391 439 -171 280 72 14 58 chr15 30573625 30573694 -55122060 + (TA)n Simple_repeat Simple_repeat 1 66 0 685 120 0 74 chr15 30573732 30573840 -55121914 - AluJ/FLAM SINE Alu -211 101 2 2742 192 51 29 chr15 30573840 30574490 -55121264 - L1MC4a LINE L1 -315 7493 6830 303 183 113 0 chr15 30574496 30574567 -55121187 - L1MA9 LINE L1 -6 6306 6228 2090 129 0 3 chr15 30574805 30575092 -55120662 + AluSx SINE Alu 5 290 -22 983 160 33 6 chr15 30575202 30575383 -55120371 + L1M4 LINE L1 16 201 -6341 2590 109 51 9 chr15 30575383 30575813 -55119941 + LTR7 LTR ERV1 1 448 -2 7266 93 26 27 chr15 30575815 30576905 -55118849 + HERVH LTR ERV1 1 1089 -6624 14613 136 10 22 chr15 30577013 30579316 -55116438 + HERVH LTR ERV1 1719 3993 -3720 1852 116 9 14 chr15 30579299 30579609 -55116145 + HERVH LTR ERV1 3954 5144 -1947 * 5698 146 33 1 chr15 30579778 30580667 -55115087 + HERVH LTR ERV1 4233 5149 -2564 1389 129 18 5 chr15 30580668 30580885 -55114869 + HERVH LTR ERV1 5600 5819 -1894 * 2390 98 50 13 chr15 30580883 30581261 -55114493 + HERVH LTR ERV1 7322 7713 0 2846 74 93 29 chr15 30581261 30581682 -55114072 + LTR7 LTR ERV1 1 448 -2 2037 241 14 81 chr15 30581721 30582377 -55113377 + LTR9 LTR ERV1 1 612 0 2310 112 16 42 chr15 30582377 30582753 -55113001 + THE1C LTR MaLR 8 375 0 501 233 95 63 chr15 30582753 30582942 -55112812 + L1M4 LINE L1 221 415 -6127 2933 135 28 7 chr15 30582942 30583400 -55112354 - MER41E LTR ERV1 0 512 45 912 136 0 0 chr15 30583542 30583667 -55112087 + FLAM_C SINE Alu 1 125 -18 775 214 11 45 chr15 30583678 30583796 -55111958 + L1M4 LINE L1 462 574 -5968 3376 99 24 2 chr15 30583796 30584250 -55111504 + MER4C LTR ERV1 1 464 -1 775 214 11 45 chr15 30584250 30584309 -55111445 + L1M4 LINE L1 574 633 -5909 776 186 36 0 chr15 30584318 30584458 -55111296 - MLT2C1 LTR ERVL -252 145 1 921 214 9 19 chr15 30584586 30584801 -55110953 + L1MC4 LINE L1 7829 8041 -1 261 207 0 0 chr15 30584812 30584870 -55110884 + L1ME LINE L1 5669 5726 -438 1249 166 81 122 chr15 30584870 30585188 -55110566 + AluJb SINE Alu 1 306 0 2270 104 0 10 chr15 30585250 30585558 -55110196 - AluSc SINE Alu -2 307 3 689 147 0 20 chr15 30585611 30585713 -55110041 + FLAM_A SINE Alu 20 119 -23 764 253 89 0 chr15 30585765 30586002 -55109752 - MIR SINE MIR -4 258 1 222 37 0 0 chr15 30586483 30586510 -55109244 + (T)n Simple_repeat Simple_repeat 1 27 0 204 40 0 0 chr15 30586965 30586990 -55108764 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 186 43 0 0 chr15 30588353 30588376 -55107378 + (A)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr15 30588471 30588494 -55107260 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr15 30588792 30588821 -55106933 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr15 30588868 30588892 -55106862 + AT_rich Low_complexity Low_complexity 1 24 0 252 86 0 0 chr15 30589865 30589900 -55105854 + (T)n Simple_repeat Simple_repeat 1 35 0 396 0 0 0 chr15 30590582 30590626 -55105128 + (A)n Simple_repeat Simple_repeat 1 44 0 2501 70 20 0 chr15 30591207 30591508 -55104246 + AluSx SINE Alu 1 307 -5 25 0 0 0 chr15 30593971 30593996 -55101758 + AT_rich Low_complexity Low_complexity 1 25 0 305 336 8 8 chr15 30594521 30594643 -55101111 + MIR3 SINE MIR 44 165 -43 220 313 131 0 chr15 30594640 30594739 -55101015 + MIR SINE MIR 102 213 -49 * 416 153 31 110 chr15 30595972 30596088 -55099666 - Charlie7 DNA MER1_type -36 2576 2475 1527 164 42 35 chr15 30596088 30596375 -55099379 - AluJb SINE Alu -23 289 1 416 153 31 110 chr15 30596375 30596421 -55099333 - Charlie7 DNA MER1_type -137 2475 2427 288 281 70 9 chr15 30597013 30597127 -55098627 - L2 LINE L2 -219 3053 2933 466 350 21 8 chr15 30598634 30598871 -55096883 + LTR16A LTR ERVL 211 450 0 2043 154 0 0 chr15 30598892 30599191 -55096563 + AluSx SINE Alu 1 299 -13 451 300 65 69 chr15 30599294 30599554 -55096200 - L2 LINE L2 -845 2469 2211 207 167 0 0 chr15 30600473 30600509 -55095245 + GA-rich Low_complexity Low_complexity 2 37 0 504 222 104 7 chr15 30601050 30601194 -55094560 + MER103 DNA DNA 9 166 0 603 242 250 19 chr15 30601238 30601498 -55094256 + MER5C DNA MER1_type 5 324 0 418 73 21 41 chr15 30601795 30601879 -55093875 - MSTD LTR MaLR -286 79 1 392 260 48 55 chr15 30601880 30602026 -55093728 - MIR SINE MIR -61 201 57 768 161 112 49 chr15 30602620 30602844 -55092910 + L1MB8 LINE L1 5934 6171 -7 423 294 43 33 chr15 30604511 30604695 -55091059 - MIR SINE MIR -43 219 34 4014 125 6 3 chr15 30605215 30605848 -55089906 + L1MA4 LINE L1 5664 6298 -2 777 231 23 0 chr15 30607695 30607868 -55087886 - MER5B DNA MER1_type 0 178 2 475 212 277 0 chr15 30607882 30608019 -55087735 - MER5A DNA MER1_type -6 183 9 290 230 127 111 chr15 30608056 30608182 -55087572 + MER5A DNA MER1_type 12 139 -50 191 231 77 64 chr15 30608294 30608372 -55087382 - L3 LINE CR1 -904 673 595 475 287 60 11 chr15 30608396 30608661 -55087093 + L1ME4a LINE L1 5444 5728 -393 209 341 71 24 chr15 30608676 30608761 -55086993 + L2 LINE L2 3148 3236 -36 455 277 89 25 chr15 30608773 30608941 -55086813 + L1ME4a LINE L1 5767 5923 -198 345 24 0 0 chr15 30608941 30608983 -55086771 + (TG)n Simple_repeat Simple_repeat 2 43 0 455 277 89 25 chr15 30608983 30609128 -55086626 + L1ME4a LINE L1 5923 6100 -21 642 75 11 0 chr15 30609168 30609262 -55086492 - L1PB1 LINE L1 -2 6149 6055 260 332 55 0 chr15 30609369 30609481 -55086273 + MER5A DNA MER1_type 56 183 -6 2501 67 0 0 chr15 30609617 30609914 -55085840 + AluY SINE Alu 1 297 -14 446 218 226 24 chr15 30610444 30610568 -55085186 - MER5A DNA MER1_type -2 187 39 1504 236 31 104 chr15 30610635 30611402 -55084352 + L1MC4 LINE L1 6379 7110 -932 387 0 0 0 chr15 30611627 30611670 -55084084 + (CA)n Simple_repeat Simple_repeat 2 44 0 2186 102 3 0 chr15 30611793 30612104 -55083650 - AluSq SINE Alu 0 312 1 1901 115 8 0 chr15 30612454 30612706 -55083048 + AluSx SINE Alu 43 296 -16 360 0 0 0 chr15 30612957 30612997 -55082757 + (CA)n Simple_repeat Simple_repeat 2 41 0 22 56 0 0 chr15 30613175 30613211 -55082543 + AT_rich Low_complexity Low_complexity 1 36 0 288 367 75 14 chr15 30614201 30614348 -55081406 + L2 LINE L2 3116 3271 -1 656 217 143 19 chr15 30614380 30614541 -55081213 - MER5A DNA MER1_type 0 189 9 219 204 107 68 chr15 30615072 30615175 -55080579 + L2 LINE L2 2930 3036 -236 369 0 0 0 chr15 30615202 30615243 -55080511 + (CA)n Simple_repeat Simple_repeat 2 42 0 254 304 163 0 chr15 30615268 30615360 -55080394 + L2 LINE L2 3141 3247 -25 609 280 49 49 chr15 30615807 30616111 -55079643 - L1ME LINE L1 -376 5786 5483 439 231 99 0 chr15 30616334 30616455 -55079299 - MIR3 SINE MIR -9 199 67 2131 79 10 27 chr15 30616600 30616892 -55078862 - AluSc SINE Alu -22 287 1 844 208 23 0 chr15 30619175 30619348 -55076406 + MER5B DNA MER1_type 2 178 0 1055 103 0 0 chr15 30619538 30619684 -55076070 - L1PA11 LINE L1 0 6174 6029 324 83 0 0 chr15 30626973 30627021 -55068733 + (TGG)n Simple_repeat Simple_repeat 1 48 0 192 40 0 0 chr15 30627517 30627542 -55068212 + (TC)n Simple_repeat Simple_repeat 1 25 0 336 83 0 0 chr15 30627543 30627591 -55068163 + (TG)n Simple_repeat Simple_repeat 2 49 0 23 0 0 0 chr15 30627636 30627659 -55068095 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr15 30627867 30627887 -55067867 + (CCG)n Simple_repeat Simple_repeat 3 22 0 245 252 39 94 chr15 30630607 30630734 -55065020 + L2 LINE L2 3193 3312 -1 243 0 0 0 chr15 30631874 30631901 -55063853 + (T)n Simple_repeat Simple_repeat 1 27 0 313 261 46 46 chr15 30635221 30635351 -55060403 - L1M4 LINE L1 -2944 3202 3073 204 265 19 19 chr15 30637502 30637664 -55058090 + CT-rich Low_complexity Low_complexity 3 164 0 22 35 0 0 chr15 30638078 30638107 -55057647 + AT_rich Low_complexity Low_complexity 1 29 0 468 0 0 0 chr15 30638921 30638973 -55056781 + (TG)n Simple_repeat Simple_repeat 2 53 0 189 0 0 0 chr15 30639270 30639291 -55056463 + (CTG)n Simple_repeat Simple_repeat 2 22 0 25 31 0 0 chr15 30643426 30643458 -55052296 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr15 30643628 30643648 -55052106 + (CGG)n Simple_repeat Simple_repeat 2 21 0 515 250 172 10 chr15 30646397 30646589 -55049165 + MIR SINE MIR 35 257 -5 1514 160 46 36 chr15 30648708 30649014 -55046740 - AluJo SINE Alu -3 309 1 914 271 79 75 chr15 30649812 30650295 -55045459 + MLT1J LTR MaLR 27 511 0 2166 111 21 0 chr15 30650446 30650735 -55045019 + AluSx SINE Alu 1 295 -17 1586 190 7 14 chr15 30650749 30651028 -55044726 - AluJo SINE Alu -35 277 1 1864 194 66 16 chr15 30651030 30651407 -55044347 + MSTD LTR MaLR 1 396 0 305 216 68 0 chr15 30651407 30651495 -55044259 + MER20B DNA MER1_type 558 651 -132 2277 82 10 13 chr15 30651796 30652099 -55043655 - AluSg SINE Alu -7 303 2 188 428 14 7 chr15 30653762 30653907 -55041847 - L2 LINE L2 -433 2881 2736 14968 81 15 1 chr15 30654018 30654652 -55041102 - L1PA7 LINE L1 0 6154 5530 2099 101 31 7 chr15 30654652 30654938 -55040816 + AluSp SINE Alu 3 295 -18 14968 81 15 1 chr15 30654938 30657116 -55038638 - L1PA7 LINE L1 -624 5530 3322 517 303 59 59 chr15 30657116 30657506 -55038248 - L2 LINE L2 -611 2703 2314 248 89 0 22 chr15 30658304 30658349 -55037405 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 532 246 0 9 chr15 30658359 30658473 -55037281 - MER81 DNA DNA 0 114 2 200 176 0 0 chr15 30658477 30658511 -55037243 + (TG)n Simple_repeat Simple_repeat 1 34 0 2254 92 0 22 chr15 30659110 30659426 -55036328 + AluSc SINE Alu 1 309 0 204 188 43 0 chr15 30659646 30659715 -55036039 + (TA)n Simple_repeat Simple_repeat 2 73 0 1849 154 21 0 chr15 30659819 30660098 -55035656 + AluSx SINE Alu 1 285 -27 506 303 116 44 chr15 30660298 30660687 -55035067 - L1MC4a LINE L1 -1882 5926 5510 641 297 93 13 chr15 30661180 30661416 -55034338 + MIR SINE MIR 2 256 -6 180 0 0 0 chr15 30662282 30662302 -55033452 + (CATTC)n Simple_repeat Simple_repeat 2 21 0 39011 75 3 8 chr15 30662439 30668390 -55027364 + L1PA6 LINE L1 239 6152 -2 490 276 78 58 chr15 30668604 30668682 -55027072 - L1ME3A LINE L1 -293 5877 5802 2504 42 0 0 chr15 30668682 30668966 -55026788 - AluY SINE Alu -14 297 14 490 276 78 58 chr15 30668966 30669130 -55026624 - L1ME3A LINE L1 -368 5802 5630 369 233 135 8 chr15 30669169 30669302 -55026452 - L1ME3A LINE L1 -643 5523 5374 630 273 49 72 chr15 30669304 30669428 -55026326 - L1ME4a LINE L1 -187 5934 5809 1958 170 3 10 chr15 30669428 30669739 -55026015 - AluSx SINE Alu -3 309 1 630 273 49 72 chr15 30669739 30670003 -55025751 - L1ME4a LINE L1 -312 5809 5555 365 103 15 0 chr15 30672815 30672883 -55022871 + (TG)n Simple_repeat Simple_repeat 2 70 0 784 259 73 62 chr15 30673687 30674348 -55021406 - L1MC5 LINE L1 -34 7927 7260 473 249 36 2 chr15 30674584 30674774 -55020980 + MLT2B1 LTR ERVL 1 198 -216 714 206 13 27 chr15 30675029 30675206 -55020548 + MLT2B1 LTR ERVL 321 493 -22 256 111 37 74 chr15 30675223 30675277 -55020477 + MLT2B1 LTR ERVL 466 517 -3 461 191 19 19 chr15 30675308 30675413 -55020341 + MER103 DNA DNA 55 159 -7 2588 125 20 20 chr15 30675415 30675786 -55019968 + MSTB LTR MaLR 1 374 -52 2511 99 57 8 chr15 30675786 30676169 -55019585 - L1PA10 LINE L1 0 6168 5767 2588 125 20 20 chr15 30676169 30676198 -55019556 + MSTB LTR MaLR 373 401 -25 307 311 58 24 chr15 30676282 30676488 -55019266 - L3 LINE CR1 -264 1313 1101 483 227 176 11 chr15 30676694 30676870 -55018884 - MLT1K LTR MaLR -65 523 319 241 266 0 0 chr15 30677170 30677234 -55018520 - MIR SINE MIR -82 126 63 362 315 9 9 chr15 30679071 30679182 -55016572 + CT-rich Low_complexity Low_complexity 2 112 0 7440 47 0 1 chr15 30679686 30680111 -55015643 + L1PA5 LINE L1 4584 5008 -1146 2332 56 0 21 chr15 30680111 30680421 -55015333 - AluY SINE Alu 0 305 2 7440 47 0 1 chr15 30680421 30681579 -55014175 + L1PA5 LINE L1 5008 6149 -5 227 313 0 24 chr15 30681619 30681702 -55014052 - MIR SINE MIR -2 260 180 1867 142 76 33 chr15 30681726 30682093 -55013661 + MLT1B LTR MaLR 1 383 -7 603 250 0 8 chr15 30683210 30683342 -55012412 + MIR3 SINE MIR 39 169 -39 371 299 24 31 chr15 30683726 30683803 -55011951 - L2 LINE L2 -11 3261 3184 1956 153 3 7 chr15 30683803 30684097 -55011657 + AluJb SINE Alu 1 293 -19 371 299 24 31 chr15 30684097 30684146 -55011608 - L2 LINE L2 -88 3184 3136 2016 139 18 52 chr15 30684984 30685372 -55010382 - THE1C LTR MaLR 0 375 1 491 261 27 17 chr15 30686926 30687108 -55008646 + MIR SINE MIR 31 206 -56 1369 176 0 8 chr15 30688783 30689021 -55006733 + MER46A DNA MER2_type 1 236 0 297 0 0 0 chr15 30689091 30689124 -55006630 + (TG)n Simple_repeat Simple_repeat 2 34 0 29 0 0 0 chr15 30689247 30689276 -55006478 + AT_rich Low_complexity Low_complexity 1 29 0 618 245 64 82 chr15 30689586 30689737 -55006017 - L1MC5 LINE L1 -35 7926 7774 935 168 6 0 chr15 30689737 30689898 -55005856 - FRAM SINE Alu 0 166 5 618 245 64 82 chr15 30689898 30690180 -55005574 - L1MC5 LINE L1 -187 7774 7501 1211 214 82 20 chr15 30690180 30690483 -55005271 - MER2 DNA MER2_type 0 345 24 504 293 7 7 chr15 30690540 30690690 -55005064 + MIR3 SINE MIR 30 179 -29 594 313 179 27 chr15 30691033 30691509 -55004245 - L3 LINE CR1 -3 1574 1027 1990 140 31 0 chr15 30694688 30694981 -55000773 + AluSx SINE Alu 11 312 0 347 137 36 129 chr15 30694981 30695120 -55000634 + L1MC5 LINE L1 7819 7944 -17 404 250 18 18 chr15 30697189 30697301 -54998453 + MIR3 SINE MIR 90 201 -7 241 244 26 13 chr15 30698447 30698525 -54997229 - LTR67 LTR ERVL -5 552 474 412 331 63 0 chr15 30698811 30698953 -54996801 - LTR67 LTR ERVL -368 189 39 2387 106 23 17 chr15 30699119 30699469 -54996285 + THE1C LTR MaLR 1 352 -23 940 208 66 0 chr15 30699609 30699835 -54995919 + LTR16C LTR ERVL 241 481 -10 207 0 0 0 chr15 30699968 30699991 -54995763 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 361 233 33 92 chr15 30701099 30701144 -54994610 - L2 LINE L2 -16 3297 3251 836 240 36 44 chr15 30701144 30701318 -54994436 - MER58A DNA MER1_type -2197 223 50 1771 183 0 3 chr15 30701318 30701608 -54994146 + AluJo SINE Alu 3 291 -21 836 240 36 44 chr15 30701608 30701658 -54994096 - MER58A DNA MER1_type -2370 50 1 361 233 33 92 chr15 30701658 30701732 -54994022 - L2 LINE L2 -62 3251 3185 1116 250 105 33 chr15 30702165 30702270 -54993484 + L2 LINE L2 2584 2680 -633 2240 116 0 10 chr15 30702270 30702564 -54993190 + AluSx SINE Alu 1 291 -21 1116 250 105 33 chr15 30702564 30703122 -54992632 + L2 LINE L2 2680 3288 -25 1343 164 131 40 chr15 30703123 30703421 -54992333 - THE1A LTR MaLR 0 355 31 2368 86 3 32 chr15 30703522 30703837 -54991917 - AluSg SINE Alu -4 306 1 236 216 111 92 chr15 30705491 30705644 -54990110 - L1ME4a LINE L1 -2 6119 5964 404 226 75 0 chr15 30707028 30707134 -54988620 - L2 LINE L2 -8 3305 3192 958 216 15 0 chr15 30707625 30707829 -54987925 - LTR16A1 LTR ERVL -5 452 246 446 273 7 53 chr15 30707874 30708024 -54987730 - LTR16A1 LTR ERVL -306 151 9 256 367 36 28 chr15 30708102 30708494 -54987260 - L2 LINE L2 -746 2568 2174 531 254 82 26 chr15 30709492 30709768 -54985986 - L1ME1 LINE L1 -9 6155 5912 2064 108 0 0 chr15 30709774 30710043 -54985711 + AluSq SINE Alu 27 295 -18 210 221 59 44 chr15 30711072 30711140 -54984614 - MIR SINE MIR -123 139 71 707 253 52 0 chr15 30712319 30712473 -54983281 + MER96 DNA MER1_type? 14 175 0 681 243 44 34 chr15 30713150 30713356 -54982398 + MIR SINE MIR 52 259 -3 259 307 88 18 chr15 30714177 30714291 -54981463 + MIR SINE MIR 30 151 -57 312 151 0 54 chr15 30715343 30715436 -54980318 + CT-rich Low_complexity Low_complexity 2 89 0 216 67 0 0 chr15 30715718 30715748 -54980006 + (T)n Simple_repeat Simple_repeat 1 30 0 180 125 0 0 chr15 30716431 30716463 -54979291 + (TG)n Simple_repeat Simple_repeat 1 32 0 505 333 33 29 chr15 30718171 30718414 -54977340 + MIR SINE MIR 9 252 -10 406 262 56 0 chr15 30720059 30720166 -54975588 + MIR SINE MIR 34 146 -62 340 330 89 8 chr15 30720670 30720906 -54974848 + L2 LINE L2 2404 2658 -656 205 262 0 33 chr15 30721224 30721285 -54974469 + L2 LINE L2 3010 3068 -245 287 322 0 22 chr15 30721342 30721432 -54974322 - MIR SINE MIR -128 134 47 191 286 63 16 chr15 30721438 30721501 -54974253 - MIR SINE MIR -188 74 9 567 236 30 42 chr15 30721501 30721666 -54974088 + MER117 DNA MER1_type 1 163 -34 2272 102 0 10 chr15 30721878 30722183 -54973571 - AluSx SINE Alu -10 302 1 396 312 151 19 chr15 30723039 30723363 -54972391 + L2 LINE L2 2343 2709 -605 237 67 0 0 chr15 30723457 30723487 -54972267 - LTR6A LTR ERV1 -462 102 73 4894 144 5 14 chr15 30724408 30725216 -54970538 - L1MC1 LINE L1 -14 6319 5519 3310 161 93 152 chr15 30725255 30725517 -54970237 + L1MA10 LINE L1 3313 3589 -2557 1020 175 0 11 chr15 30725517 30725694 -54970060 - FRAM SINE Alu -1 175 1 3310 161 93 152 chr15 30725694 30726482 -54969272 + L1MA10 LINE L1 3589 4467 -1679 * 5447 187 10 18 chr15 30726468 30727636 -54968118 + L1MA10 LINE L1 5176 6334 0 480 329 136 5 chr15 30727645 30728061 -54967693 + L2 LINE L2 2717 3280 -33 239 298 36 0 chr15 30728101 30728185 -54967569 + MIR3 SINE MIR 101 187 -21 821 131 7 7 chr15 30728219 30728364 -54967390 - L1PA13 LINE L1 0 6163 6019 207 69 0 0 chr15 30729618 30729647 -54966107 + (A)n Simple_repeat Simple_repeat 1 29 0 206 333 67 0 chr15 30729651 30729756 -54965998 + MIR SINE MIR 150 261 -1 250 267 158 42 chr15 30729991 30730111 -54965643 + L2 LINE L2 3180 3313 0 267 330 64 25 chr15 30730384 30730620 -54965134 - L1MC/D LINE L1 -1961 5847 5603 5695 132 8 28 chr15 30781758 30782981 -54912773 - L1MA2 LINE L1 -96 7627 6427 2824 115 34 13 chr15 30783000 30783581 -54912173 - L1MA2 LINE L1 -3822 3743 3157 448 162 36 27 chr15 30783575 30783686 -54912068 - L1MA2 LINE L1 -7438 127 16 * 942 205 22 0 chr15 30784323 30784508 -54911246 + MER5A DNA MER1_type 1 189 0 1009 289 77 11 chr15 30785983 30786437 -54909317 + LTR16C LTR ERVL 1 484 -7 186 43 0 0 chr15 30786466 30786489 -54909265 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 222 315 14 0 chr15 30786597 30786670 -54909084 + L2 LINE L2 3235 3308 -5 358 286 14 61 chr15 30786711 30786872 -54908882 + MIR3 SINE MIR 28 181 -27 213 196 0 0 chr15 30787816 30787862 -54907892 + CT-rich Low_complexity Low_complexity 3 48 0 360 0 0 0 chr15 30790461 30790501 -54905253 + (TG)n Simple_repeat Simple_repeat 2 41 0 951 234 113 0 chr15 30791028 30791259 -54904495 - MIR SINE MIR 0 262 6 203 183 33 17 chr15 30791590 30791650 -54904104 + A-rich Low_complexity Low_complexity 5 65 0 28 29 0 0 chr15 30792551 30792586 -54903168 + AT_rich Low_complexity Low_complexity 1 35 0 1283 167 8 0 chr15 30792592 30792831 -54902923 - L1MA6 LINE L1 -4 6296 6056 2952 108 22 208 chr15 30792831 30793321 -54902433 - L1 LINE L1 -897 5249 4670 204 40 0 0 chr15 30793321 30793346 -54902408 + (TG)n Simple_repeat Simple_repeat 2 26 0 2952 108 22 208 chr15 30793346 30793532 -54902222 - L1 LINE L1 -1476 4670 4796 1770 171 0 27 chr15 30793532 30793830 -54901924 - AluJb SINE Alu -22 290 1 2952 108 22 208 chr15 30793830 30794101 -54901653 - L1 LINE L1 -1349 4797 4477 626 214 41 36 chr15 30794107 30794303 -54901451 + L1M4 LINE L1 3633 3829 -2317 6011 169 14 1 chr15 30794303 30794828 -54900926 - L1PA13 LINE L1 0 6163 5646 1890 165 44 14 chr15 30794828 30795192 -54900562 + THE1C LTR MaLR 1 375 0 6011 169 14 1 chr15 30795192 30796583 -54899171 - L1PA13 LINE L1 -517 5646 4240 11363 200 22 3 chr15 30796686 30799213 -54896541 - L1PA13 LINE L1 -2384 3762 1189 778 164 71 0 chr15 30799348 30799555 -54896199 - L1 LINE L1 -2973 3173 2952 216 0 0 0 chr15 30799970 30799994 -54895760 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 420 360 81 9 chr15 30800545 30800767 -54894987 + MIR SINE MIR 17 254 -8 1294 251 55 49 chr15 30801369 30801840 -54893914 + LTR33 LTR ERVL 1 474 -47 22 0 0 0 chr15 30802450 30802472 -54893282 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr15 30802582 30802624 -54893130 + AT_rich Low_complexity Low_complexity 1 42 0 6289 91 9 3 chr15 30802633 30804339 -54891415 + L1PA13 LINE L1 4459 6161 -2 585 258 122 14 chr15 30804518 30804731 -54891023 - MIR SINE MIR -10 252 17 2359 113 0 0 chr15 30806286 30806645 -54889109 - AluY SINE Alu 0 359 1 433 313 93 78 chr15 30806898 30807407 -54888347 + L2 LINE L2 2543 3073 -199 589 257 4 41 chr15 30808475 30808720 -54887034 - L1ME LINE L1 -303 5818 5583 231 146 0 0 chr15 30810004 30810045 -54885709 + (TTTTC)n Simple_repeat Simple_repeat 3 43 0 1555 222 57 26 chr15 30811773 30812228 -54883526 - Charlie4a DNA MER1_type -19 489 21 449 286 15 0 chr15 30812356 30812489 -54883265 - MLT1J LTR MaLR -316 195 61 2122 109 20 13 chr15 30812490 30812794 -54882960 + AluSq SINE Alu 1 306 -7 21 0 0 0 chr15 30813097 30813118 -54882636 + AT_rich Low_complexity Low_complexity 1 21 0 893 255 109 28 chr15 30813127 30813340 -54882414 - L2 LINE L2 0 3313 3064 2037 201 59 97 chr15 30813340 30814020 -54881734 + MLT1E1 LTR MaLR 1 654 0 893 255 109 28 chr15 30814020 30814128 -54881626 - L2 LINE L2 -249 3064 2966 1053 263 135 17 chr15 30814136 30814604 -54881150 - L2 LINE L2 -618 2696 2174 2708 90 0 0 chr15 30814682 30815037 -54880717 - THE1A LTR MaLR 0 355 1 10606 96 6 8 chr15 30815050 30816607 -54879147 - THE1A-int LTR MaLR -27 1553 1 2610 104 0 3 chr15 30816607 30816963 -54878791 - THE1A LTR MaLR 0 355 1 269 204 23 114 chr15 30816963 30817051 -54878703 - MIR SINE MIR -95 113 34 1392 201 19 29 chr15 30818091 30818399 -54877355 - AluJo SINE Alu -7 305 1 281 260 135 19 chr15 30819171 30819275 -54876479 + L2 LINE L2 3153 3268 -4 21 0 0 0 chr15 30819355 30819376 -54876378 + AT_rich Low_complexity Low_complexity 1 21 0 412 244 75 12 chr15 30819514 30819674 -54876080 - L1MC/D LINE L1 -1999 5809 5640 190 194 90 30 chr15 30819885 30819952 -54875802 + MER5C DNA MER1_type 9 79 -245 317 94 281 0 chr15 30820386 30820450 -54875304 - L1PA16 LINE L1 -5 6864 6783 6394 189 23 18 chr15 30820551 30822265 -54873489 - L1PA16 LINE L1 -110 6759 5037 2061 123 3 3 chr15 30822265 30822565 -54873189 + AluSx SINE Alu 5 304 -8 6394 189 23 18 chr15 30822565 30823200 -54872554 - L1PA16 LINE L1 -1832 5037 4407 1202 268 39 42 chr15 30823301 30823693 -54872061 + L1M4 LINE L1 2870 3261 -2885 243 103 0 0 chr15 30823693 30823732 -54872022 + (CA)n Simple_repeat Simple_repeat 2 40 0 1202 268 39 42 chr15 30823732 30824034 -54871720 + L1M4 LINE L1 3261 3562 -2584 1391 254 115 40 chr15 30824191 30824744 -54871010 + L1M4 LINE L1 3865 4375 -1771 2610 99 6 0 chr15 30824744 30825097 -54870657 + THE1A LTR MaLR 1 355 0 1391 254 115 40 chr15 30825097 30825663 -54870091 + L1M4 LINE L1 4375 5068 -1078 2048 256 39 7 chr15 30825771 30826471 -54869283 - L1PA16 LINE L1 -2989 3860 3139 2953 165 13 6 chr15 30826473 30827000 -54868754 - L1PA16 LINE L1 -6318 531 1 289 333 83 30 chr15 30827299 30827431 -54868323 - L2 LINE L2 -1 3271 3133 401 295 16 16 chr15 30828297 30828419 -54867335 - MIR SINE MIR -94 168 47 339 25 0 0 chr15 30828461 30828501 -54867253 + (GA)n Simple_repeat Simple_repeat 2 41 0 242 309 44 55 chr15 30828913 30829094 -54866660 + L2 LINE L2 2474 2652 -662 352 344 72 77 chr15 30829109 30829472 -54866282 - L2 LINE L2 0 3272 2912 1850 266 95 9 chr15 30829667 30830226 -54865528 + MLT2E LTR ERVL 22 628 0 21 36 0 0 chr15 30831810 30831838 -54863916 + AT_rich Low_complexity Low_complexity 1 28 0 359 118 0 0 chr15 30832506 30832557 -54863197 + THE1B LTR MaLR 314 364 0 365 195 23 0 chr15 30832566 30832653 -54863101 + MER20 DNA MER1_type 130 218 -1 39615 43 27 0 chr15 30832747 30838726 -54857028 + L1PA2 LINE L1 11 6155 0 240 35 0 0 chr15 30839845 30839874 -54855880 + (TC)n Simple_repeat Simple_repeat 2 30 0 384 336 54 36 chr15 30839876 30840156 -54855598 - L3 LINE CR1 -107 1470 1186 371 275 191 6 chr15 30841170 30841348 -54854406 + MIR SINE MIR 52 262 0 198 372 0 26 chr15 30841395 30841473 -54854281 + MIR SINE MIR 17 92 -116 279 303 112 3 chr15 30841639 30841828 -54853926 - MIR SINE MIR 0 262 3 359 303 61 57 chr15 30842070 30842175 -54853579 + MIR SINE MIR 34 137 -125 22 0 0 0 chr15 30842175 30842197 -54853557 + AT_rich Low_complexity Low_complexity 1 22 0 359 303 61 57 chr15 30842197 30842298 -54853456 + MIR SINE MIR 137 262 0 739 236 144 31 chr15 30843330 30843559 -54852195 + MIR SINE MIR 5 259 -3 351 262 63 40 chr15 30843610 30843736 -54852018 - MIR SINE MIR -48 214 86 306 291 34 26 chr15 30845847 30845964 -54849790 + MIR3 SINE MIR 81 198 -10 190 387 189 0 chr15 30846677 30846783 -54848971 + L2 LINE L2 3147 3272 0 188 257 0 0 chr15 30847614 30847649 -54848105 - MIR SINE MIR -124 84 50 2117 125 0 10 chr15 30847674 30847978 -54847776 - AluSg SINE Alu -9 301 1 225 0 0 0 chr15 30847985 30848010 -54847744 + (T)n Simple_repeat Simple_repeat 1 25 0 28 0 0 0 chr15 30848693 30848721 -54847033 + AT_rich Low_complexity Low_complexity 1 28 0 301 277 0 12 chr15 30848755 30848838 -54846916 - L1ME LINE L1 -513 5608 5527 224 130 19 37 chr15 30848845 30848899 -54846855 + T-rich Low_complexity Low_complexity 2 54 0 204 225 0 0 chr15 30850062 30850102 -54845652 + A-rich Low_complexity Low_complexity 2 41 0 435 78 0 0 chr15 30851705 30851769 -54843985 + (TTCA)n Simple_repeat Simple_repeat 2 65 0 362 309 34 68 chr15 30851947 30852154 -54843600 + MIR3 SINE MIR 1 200 -8 1087 147 0 0 chr15 30852464 30852627 -54843127 + FRAM SINE Alu 4 166 0 216 351 9 45 chr15 30852690 30852801 -54842953 - L2 LINE L2 -6 3266 3160 248 306 71 12 chr15 30853839 30854021 -54841733 + MIR SINE MIR 44 262 0 5484 172 29 35 chr15 30854056 30854237 -54841517 + L1MA10 LINE L1 4208 4389 -1945 1787 155 36 26 chr15 30854237 30854546 -54841208 + AluJb SINE Alu 1 312 0 5484 172 29 35 chr15 30854546 30856475 -54839279 + L1MA10 LINE L1 4389 6323 -11 1397 189 10 50 chr15 30857921 30858222 -54837532 - AluJb SINE Alu -23 289 1 195 363 159 5 chr15 30858418 30858619 -54837135 + L2 LINE L2 2572 2803 -511 260 203 13 38 chr15 30859122 30859201 -54836553 - L1ME4a LINE L1 -103 6018 5942 239 194 30 0 chr15 30859339 30859406 -54836348 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 5371 232 49 15 chr15 30859506 30862463 -54833291 - L1MB2 LINE L1 -19 6152 3067 355 359 38 23 chr15 30862999 30863130 -54832624 - L2 LINE L2 -18 3254 3122 21713 137 13 5 chr15 30863233 30868017 -54827737 + L1PA10 LINE L1 1998 6831 0 262 198 121 33 chr15 30868226 30868317 -54827437 - L2 LINE L2 -262 3010 2912 188 313 48 72 chr15 30868519 30868602 -54827152 - L2 LINE L2 0 3272 3192 331 287 14 63 chr15 30868680 30868823 -54826931 - L2 LINE L2 -253 3060 2925 494 265 55 31 chr15 30869954 30870184 -54825570 + MIR SINE MIR 16 248 -14 685 310 27 19 chr15 30872262 30872520 -54823234 + MIR SINE MIR 3 262 0 288 257 143 9 chr15 30872929 30873034 -54822720 - MER5A DNA MER1_type -70 119 1 294 223 205 27 chr15 30873045 30873157 -54822597 + MIR SINE MIR 21 152 -110 421 107 0 27 chr15 30873802 30873877 -54821877 - L1PA11 LINE L1 -1 6173 6101 2571 57 0 0 chr15 30873888 30874184 -54821570 - AluY SINE Alu -15 296 1 23 54 0 0 chr15 30874609 30874646 -54821108 + AT_rich Low_complexity Low_complexity 1 37 0 477 170 95 82 chr15 30874674 30874821 -54820933 - MLT1C LTR MaLR -314 153 5 7601 25 2 0 chr15 30875243 30876499 -54819255 + L1PA4 LINE L1 4895 6152 -3 1551 211 102 20 chr15 30877002 30877184 -54818570 + MLT1D LTR MaLR 1 167 -338 342 0 0 0 chr15 30877184 30877222 -54818532 + (CA)n Simple_repeat Simple_repeat 2 39 0 1551 211 102 20 chr15 30877222 30877499 -54818255 + MLT1D LTR MaLR 167 498 -7 674 196 31 141 chr15 30877878 30878204 -54817550 - MLT2B1 LTR ERVL -186 334 45 780 250 32 23 chr15 30878490 30878706 -54817048 - MIR SINE MIR -12 250 33 839 281 56 0 chr15 30879387 30879654 -54816100 + LTR16A LTR ERVL 169 450 0 565 314 122 37 chr15 30879665 30880238 -54815516 - HAL1 LINE L1 -1881 626 5 24 32 0 0 chr15 30883852 30883883 -54811871 + AT_rich Low_complexity Low_complexity 1 31 0 441 298 39 120 chr15 30884800 30885209 -54810545 - L2 LINE L2 0 3272 2897 347 83 0 0 chr15 30886147 30886195 -54809559 + MLT1A1 LTR MaLR 103 150 -215 899 123 0 0 chr15 30886203 30886325 -54809429 + FLAM_C SINE Alu 3 124 -9 405 311 197 6 chr15 30886482 30886665 -54809089 + MIR SINE MIR 42 259 -3 216 67 0 0 chr15 30888040 30888070 -54807684 + (TG)n Simple_repeat Simple_repeat 2 31 0 195 341 98 0 chr15 30888910 30889042 -54806712 + L2 LINE L2 2837 2981 -291 335 320 85 0 chr15 30890439 30890592 -54805162 + MIR3 SINE MIR 33 198 -10 268 346 131 0 chr15 30890856 30890963 -54804791 - L2 LINE L2 -56 3216 3096 247 260 19 15 chr15 30891053 30891158 -54804596 - MIR SINE MIR -71 137 33 630 242 27 7 chr15 30893054 30893203 -54802551 - MIR3 SINE MIR -3 205 54 306 277 71 27 chr15 30893619 30893731 -54802023 + L2 LINE L2 3149 3265 -7 612 227 162 13 chr15 30893769 30893923 -54801831 + MER5A DNA MER1_type 6 182 -7 2125 142 7 0 chr15 30894071 30894381 -54801373 + AluSx SINE Alu 1 312 0 216 0 0 0 chr15 30895929 30895953 -54799801 + (TTA)n Simple_repeat Simple_repeat 2 25 0 384 309 209 0 chr15 30896902 30897103 -54798651 - MIR SINE MIR -5 257 15 9164 219 16 9 chr15 30897242 30897576 -54798178 - L1PA16 LINE L1 -10 6156 5826 2030 131 7 0 chr15 30897576 30897866 -54797888 - AluSx SINE Alu -20 292 1 9164 219 16 9 chr15 30897866 30900669 -54795085 - L1PA16 LINE L1 -340 5826 3031 494 157 10 0 chr15 30900689 30900791 -54794963 + CT-rich Low_complexity Low_complexity 3 105 0 1884 190 0 6 chr15 30900793 30901104 -54794650 - AluSx SINE Alu -3 309 1 3124 249 20 60 chr15 30901108 30902102 -54793652 - L1PA16 LINE L1 -3113 3033 2042 330 113 0 0 chr15 30902102 30902155 -54793599 + Alu SINE Alu 243 295 -5 3124 249 20 60 chr15 30902155 30902331 -54793423 - L1PA16 LINE L1 -4104 2042 1860 708 20 0 30 chr15 30902434 30902535 -54793219 + (TTC)n Simple_repeat Simple_repeat 3 100 0 591 281 55 5 chr15 30902680 30902879 -54792875 + MER3 DNA MER1_type 1 209 0 2774 189 57 37 chr15 30903305 30904417 -54791337 + L1M4 LINE L1 4627 5755 -429 762 237 65 0 chr15 30904495 30904681 -54791073 + MIR SINE MIR 58 255 -7 391 314 83 7 chr15 30904711 30904897 -54790857 + MIR3 SINE MIR 8 206 -2 1412 131 0 0 chr15 30904956 30905147 -54790607 + AluSq SINE Alu 24 214 -99 22 35 0 0 chr15 30905513 30905542 -54790212 + AT_rich Low_complexity Low_complexity 1 29 0 6469 145 21 20 chr15 30906656 30907475 -54788279 - L1MA8 LINE L1 0 6291 5475 1853 157 14 7 chr15 30907475 30907762 -54787992 - AluJo SINE Alu -23 289 1 6469 145 21 20 chr15 30907762 30907872 -54787882 - L1MA8 LINE L1 -816 5475 5367 6040 120 74 62 chr15 30907872 30908662 -54787092 + Tigger3b DNA MER2_type 2 812 -2216 1714 152 6 76 chr15 30908662 30908991 -54786763 + AluSx SINE Alu 5 310 -2 6040 120 74 62 chr15 30908991 30909416 -54786338 + Tigger3b DNA MER2_type 812 1231 0 6469 145 21 20 chr15 30909416 30910719 -54785035 - L1MA8 LINE L1 -924 5367 4045 404 229 0 21 chr15 30910813 30910909 -54784845 - MLT2E LTR ERVL -519 109 16 200 274 0 48 chr15 30911257 30911319 -54784435 + L2 LINE L2 3242 3300 -13 730 165 135 0 chr15 30911322 30911455 -54784299 + FAM SINE Alu 18 168 -17 184 276 10 102 chr15 30912546 30912644 -54783110 - L3 LINE CR1 -590 987 899 628 321 210 32 chr15 30913153 30913773 -54781981 - L3 LINE CR1 -419 1158 429 1868 198 61 2 chr15 30913785 30914210 -54781544 + L1ME2 LINE L1 5609 6058 -106 1130 244 55 37 chr15 30914231 30914613 -54781141 + MLT1B LTR MaLR 2 390 0 307 291 39 47 chr15 30914663 30914790 -54780964 - L1ME2 LINE L1 -132 6032 5907 271 257 80 18 chr15 30914791 30914904 -54780850 + MIR SINE MIR 137 256 -6 2015 134 0 0 chr15 30916016 30916300 -54779454 + AluSq SINE Alu 1 284 -29 293 82 20 0 chr15 30916303 30916352 -54779402 + (CAA)n Simple_repeat Simple_repeat 2 51 0 279 0 0 0 chr15 30916781 30916812 -54778942 + (T)n Simple_repeat Simple_repeat 1 31 0 22 0 0 0 chr15 30917253 30917275 -54778479 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr15 30917539 30917568 -54778186 + AT_rich Low_complexity Low_complexity 1 29 0 480 77 0 0 chr15 30917568 30917633 -54778121 + (TG)n Simple_repeat Simple_repeat 2 66 0 278 304 88 64 chr15 30917751 30917876 -54777878 + MER5A DNA MER1_type 59 186 -3 495 267 176 11 chr15 30918433 30918620 -54777134 + MIR SINE MIR 12 229 -33 1857 123 68 41 chr15 30922597 30922962 -54772792 + THE1C LTR MaLR 1 375 0 531 239 67 81 chr15 30923134 30923343 -54772411 - MIR SINE MIR -10 252 47 365 261 314 11 chr15 30924671 30924859 -54770895 + MIR SINE MIR 13 257 -5 340 250 0 46 chr15 30925196 30925304 -54770450 - MER103 DNA DNA -54 112 10 1594 187 16 29 chr15 30925410 30925726 -54770028 + AluJb SINE Alu 1 312 0 216 0 0 0 chr15 30925755 30925779 -54769975 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 299 364 65 26 chr15 30927407 30927561 -54768193 - L2 LINE L2 -16 3256 3097 374 265 28 81 chr15 30927782 30927993 -54767761 - LTR67 LTR ERVL -2 555 356 1104 202 206 0 chr15 30928419 30928701 -54767053 + MSTD LTR MaLR 5 344 -52 191 167 0 21 chr15 30929080 30929128 -54766626 + CT-rich Low_complexity Low_complexity 2 48 0 979 128 0 27 chr15 30929151 30929476 -54766278 + (TTTC)n Simple_repeat Simple_repeat 1 496 -44 243 0 0 0 chr15 30929476 30929503 -54766251 + (CCTG)n Simple_repeat Simple_repeat 4 30 0 979 128 0 27 chr15 30929503 30929547 -54766207 + (TTTC)n Simple_repeat Simple_repeat 496 540 0 1489 11 0 11 chr15 30929547 30929728 -54766026 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 627 14 0 0 chr15 30929728 30929800 -54765954 + (TTTC)n Simple_repeat Simple_repeat 1 72 0 997 174 18 59 chr15 30929860 30930079 -54765675 + MER20 DNA MER1_type 7 216 -3 320 155 0 0 chr15 30930298 30930356 -54765398 - MER81 DNA DNA 0 114 57 22 70 0 0 chr15 30931764 30931807 -54763947 + AT_rich Low_complexity Low_complexity 1 43 0 290 275 7 94 chr15 30933232 30933370 -54762384 + L2 LINE L2 2921 3046 -226 243 316 11 53 chr15 30936096 30936191 -54759563 - MER5A DNA MER1_type 0 189 99 213 288 89 41 chr15 30936433 30936579 -54759175 - L3b LINE CR1 -9 1574 1422 1033 252 22 14 chr15 30936867 30937145 -54758609 - L3b LINE CR1 -200 1383 1104 842 252 93 5 chr15 30937230 30937444 -54758310 + MIR SINE MIR 1 233 -29 285 349 9 11 chr15 30937626 30937754 -54758000 + MIR SINE MIR 27 151 -66 504 330 63 17 chr15 30938012 30938251 -54757503 + MIR SINE MIR 1 250 -12 366 236 87 72 chr15 30938813 30939021 -54756733 - L1ME4a LINE L1 -11 6110 5900 189 196 0 0 chr15 30939037 30939083 -54756671 + (TA)n Simple_repeat Simple_repeat 1 46 0 256 285 76 6 chr15 30939152 30939310 -54756444 - L1ME4a LINE L1 -313 5808 5640 186 43 0 0 chr15 30940283 30940306 -54755448 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 351 262 63 40 chr15 30942645 30942771 -54752983 + MIR SINE MIR 86 214 -48 739 236 144 31 chr15 30942822 30943051 -54752703 - MIR SINE MIR -3 259 5 359 303 61 57 chr15 30944083 30944311 -54751443 - MIR SINE MIR 0 262 34 279 303 112 3 chr15 30944553 30944742 -54751012 + MIR SINE MIR 3 262 0 198 372 0 26 chr15 30944908 30944986 -54750768 - MIR SINE MIR -116 92 17 371 275 191 6 chr15 30945033 30945211 -54750543 - MIR SINE MIR 0 262 52 385 333 80 22 chr15 30946229 30946505 -54749249 + L3 LINE CR1 1179 1470 -107 240 35 0 0 chr15 30946507 30946536 -54749218 + (GA)n Simple_repeat Simple_repeat 2 30 0 40745 35 21 1 chr15 30947654 30953686 -54742068 - L1PA2 LINE L1 -1 6154 1 1936 133 66 36 chr15 30953766 30954128 -54741626 + THE1C LTR MaLR 3 375 0 217 246 46 15 chr15 30955445 30955510 -54740244 - L2 LINE L2 0 3313 3247 8292 111 9 31 chr15 30955550 30956528 -54739226 - HSMAR1 DNA Mariner -9 1278 335 2046 131 3 3 chr15 30956528 30956826 -54738928 + AluSx SINE Alu 1 298 -14 8292 111 9 31 chr15 30956826 30957153 -54738601 - HSMAR1 DNA Mariner -952 335 2 194 356 130 32 chr15 30957278 30957525 -54738229 - L2 LINE L2 -190 3082 2812 258 266 16 16 chr15 30957802 30957866 -54737888 + L2 LINE L2 3246 3309 -4 890 252 57 0 chr15 30958141 30958351 -54737403 - MIR SINE MIR 0 262 41 231 366 48 43 chr15 30959047 30959233 -54736521 + L3 LINE CR1 1249 1435 -142 304 308 0 0 chr15 30959320 30959398 -54736356 - MIR SINE MIR -183 79 2 1986 259 292 5 chr15 30959734 30960860 -54734894 - L2 LINE L2 -1 3312 1838 207 327 0 0 chr15 30960950 30961002 -54734752 - L2 LINE L2 -12 3301 3250 768 275 64 21 chr15 30961572 30961805 -54733949 - MIR SINE MIR -17 245 3 2077 186 7 24 chr15 30961893 30962288 -54733466 + Tigger1 DNA MER2_type 1 390 -2028 2574 207 14 53 chr15 30962288 30962925 -54732829 + LTR9 LTR ERV1 1 612 0 2077 186 7 24 chr15 30962925 30962948 -54732806 + Tigger1 DNA MER2_type 390 412 -2006 485 306 126 0 chr15 30963009 30963264 -54732490 - L1ME LINE L1 -363 5758 5472 11050 128 59 10 chr15 30963358 30964797 -54730957 + Tigger1 DNA MER2_type 398 1956 -462 7463 32 4 3 chr15 30964797 30965785 -54729969 + L1PA4 LINE L1 5167 6155 0 11050 128 59 10 chr15 30965785 30966264 -54729490 + Tigger1 DNA MER2_type 1956 2410 -8 265 275 11 55 chr15 30966309 30966400 -54729354 - MIR SINE MIR -151 111 25 321 311 51 45 chr15 30966504 30966681 -54729073 + MIR SINE MIR 26 203 -59 269 260 0 3 chr15 30967443 30967510 -54728244 + MIR SINE MIR 78 141 -67 332 281 88 0 chr15 30967523 30967637 -54728117 - MIR SINE MIR -2 260 137 7658 11 0 0 chr15 30968060 30969411 -54726343 - L1HS LINE L1 0 6155 4805 532 283 33 28 chr15 30969630 30969810 -54725944 - MIR SINE MIR 0 262 82 426 229 0 0 chr15 30970495 30970617 -54725137 + GA-rich Low_complexity Low_complexity 3 124 0 404 228 61 18 chr15 30970632 30970746 -54725008 - MIR SINE MIR -52 210 92 237 313 0 0 chr15 30970813 30970880 -54724874 + L2 LINE L2 3246 3312 -1 408 289 146 39 chr15 30971013 30971369 -54724385 + MLT1J2 LTR MaLR 55 448 -2 2037 148 48 0 chr15 30972994 30973325 -54722429 + MER7A DNA MER2_type 1 345 -1 657 271 5 21 chr15 30974581 30974769 -54720985 - MIR SINE MIR 0 262 78 209 325 0 25 chr15 30974811 30974891 -54720863 + CT-rich Low_complexity Low_complexity 2 79 0 181 309 0 15 chr15 30974891 30974959 -54720795 - L2 LINE L2 -20 3252 3186 266 321 30 15 chr15 30975802 30975973 -54719781 - MIR SINE MIR -38 224 52 253 372 146 0 chr15 30976114 30976313 -54719441 - L2 LINE L2 -537 2777 2550 420 321 0 0 chr15 30976723 30976829 -54718925 + L2 LINE L2 3208 3313 0 28 29 0 0 chr15 30977785 30977820 -54717934 + AT_rich Low_complexity Low_complexity 1 35 0 213 205 0 0 chr15 30977847 30977886 -54717868 + A-rich Low_complexity Low_complexity 5 43 0 320 276 222 11 chr15 30978192 30978377 -54717377 - MIR SINE MIR -19 243 20 957 39 77 23 chr15 30979765 30979895 -54715859 + MER85 DNA T2_type 1 137 -2 264 250 135 0 chr15 30980775 30980879 -54714875 - L1M3 LINE L1 -673 5498 5381 400 297 126 48 chr15 30981116 30983352 -54712402 - L1M3 LINE L1 -1088 5058 2998 2421 92 0 3 chr15 30983352 30983666 -54712088 - AluSq SINE Alu 0 313 1 400 297 126 48 chr15 30983666 30983833 -54711921 - L1M3 LINE L1 -3148 2998 2845 2037 167 0 34 chr15 30983833 30984211 -54711543 + MLT1A1 LTR MaLR 1 365 0 400 297 126 48 chr15 30984211 30984438 -54711316 - L1M3 LINE L1 -3301 2845 2221 22 0 0 0 chr15 30985308 30985330 -54710424 + AT_rich Low_complexity Low_complexity 1 22 0 272 259 224 12 chr15 30985375 30985460 -54710294 + MIR3 SINE MIR 15 117 -91 346 211 126 0 chr15 30985547 30985642 -54710112 - MER103 DNA DNA -57 109 3 492 297 141 7 chr15 30987063 30987353 -54708401 - LTR16A LTR ERVL -3 447 119 317 261 40 102 chr15 30987425 30987601 -54708153 + MIR SINE MIR 97 261 -1 292 267 44 11 chr15 30988812 30988902 -54706852 - MIR SINE MIR -86 176 84 537 358 58 9 chr15 30989001 30989227 -54706527 - MIR SINE MIR -10 252 16 240 299 13 0 chr15 30989312 30989389 -54706365 + MLT1L LTR MaLR 122 199 -416 200 176 0 0 chr15 30990334 30990368 -54705386 + GA-rich Low_complexity Low_complexity 1 34 0 2261 181 50 37 chr15 30990426 30991000 -54704754 - L1MD3 LINE L1 -10 7985 7404 611 202 8 0 chr15 30991000 30991124 -54704630 - MLT1F1 LTR MaLR -442 125 1 244 73 109 36 chr15 30991125 30991180 -54704574 - L1MD3 LINE L1 -718 7277 7219 498 258 116 5 chr15 30991237 30991427 -54704327 + LTR33 LTR ERVL 1 211 -310 3937 117 15 28 chr15 30991479 30992296 -54703458 + L1PA13 LINE L1 4883 5832 -331 2169 125 7 0 chr15 30992296 30992593 -54703161 + AluSx SINE Alu 1 299 -13 3937 117 15 28 chr15 30992593 30992919 -54702835 + L1PA13 LINE L1 5832 6161 -2 378 203 80 68 chr15 30992978 30993141 -54702613 + LTR33 LTR ERVL 357 521 0 22 0 0 0 chr15 30993178 30993200 -54702554 + AT_rich Low_complexity Low_complexity 1 22 0 40 0 0 0 chr15 30993311 30993351 -54702403 + AT_rich Low_complexity Low_complexity 1 40 0 1023 134 0 5 chr15 30993353 30993539 -54702215 - L1MA8 LINE L1 -6 6285 6101 2235 125 0 0 chr15 30993549 30993854 -54701900 - AluSx SINE Alu -7 305 1 359 355 0 0 chr15 30993950 30994060 -54701694 - MIR SINE MIR -113 149 40 244 282 10 19 chr15 30994359 30994462 -54701292 - MER103 DNA DNA -52 114 13 21 36 0 0 chr15 30994524 30994552 -54701202 + AT_rich Low_complexity Low_complexity 1 28 0 359 118 0 0 chr15 30995220 30995271 -54700483 + THE1B LTR MaLR 314 364 0 365 195 23 0 chr15 30995280 30995367 -54700387 + MER20 DNA MER1_type 130 218 -1 38607 53 30 1 chr15 30995461 31001410 -54694344 + L1PA5 LINE L1 11 6139 -15 264 30 0 0 chr15 31001410 31001443 -54694311 + (TA)n Simple_repeat Simple_repeat 2 34 0 210 143 0 0 chr15 31002270 31002305 -54693449 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 231 381 30 30 chr15 31003634 31003768 -54691986 + MIR3 SINE MIR 7 140 -68 2391 109 0 0 chr15 31004183 31004495 -54691259 + AluSx SINE Alu 1 312 0 1262 216 111 33 chr15 31004733 31004947 -54690807 - MSTD LTR MaLR -6 390 135 2442 57 3 0 chr15 31004947 31005244 -54690510 - AluY SINE Alu -13 298 1 1262 216 111 33 chr15 31005244 31005391 -54690363 - MSTD LTR MaLR -261 135 1 21 82 0 0 chr15 31005751 31005800 -54689954 + AT_rich Low_complexity Low_complexity 1 49 0 438 20 0 0 chr15 31007017 31007068 -54688686 + (CA)n Simple_repeat Simple_repeat 2 52 0 24 0 0 0 chr15 31009532 31009556 -54686198 + AT_rich Low_complexity Low_complexity 1 24 0 418 342 13 20 chr15 31010189 31010338 -54685416 + MIR3 SINE MIR 19 166 -42 1956 116 53 0 chr15 31012879 31013164 -54682590 + AluSx SINE Alu 1 300 -12 200 339 31 32 chr15 31013304 31013455 -54682299 - MIR SINE MIR -18 190 37 625 251 39 17 chr15 31014255 31014434 -54681320 + MIR SINE MIR 66 248 -14 185 180 20 0 chr15 31014553 31014603 -54681151 + GA-rich Low_complexity Low_complexity 2 52 0 198 278 69 28 chr15 31016257 31016329 -54679425 - L2 LINE L2 -50 3222 3148 195 129 0 0 chr15 31016631 31016662 -54679092 + L2 LINE L2 3276 3306 -7 344 260 159 18 chr15 31017310 31017487 -54678267 + MIR SINE MIR 34 225 -37 201 119 51 34 chr15 31017661 31017682 -54678072 + T-rich Low_complexity Low_complexity 6 25 -40 3572 75 9 45 chr15 31017682 31018218 -54677536 - L1PA8 LINE L1 -8 6164 5648 201 119 51 34 chr15 31018218 31018255 -54677499 + T-rich Low_complexity Low_complexity 25 65 0 272 226 157 0 chr15 31018260 31018362 -54677392 + MLT1C LTR MaLR 1 118 -349 1703 207 66 5 chr15 31018387 31018812 -54676942 - MLT1C LTR MaLR 0 467 17 949 67 28 28 chr15 31022238 31022418 -54673336 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 311 285 80 46 chr15 31023854 31024005 -54671749 + MIR3 SINE MIR 36 191 -17 737 268 16 5 chr15 31024112 31024302 -54671452 - MIR SINE MIR -42 220 29 217 246 18 18 chr15 31024351 31024408 -54671346 + (CA)n Simple_repeat Simple_repeat 2 58 0 370 264 86 22 chr15 31026128 31026254 -54669500 + L1M4 LINE L1 4883 5000 -1194 288 53 0 0 chr15 31026254 31026292 -54669462 + (CA)n Simple_repeat Simple_repeat 1 38 0 370 264 86 22 chr15 31026292 31026670 -54669084 + L1M4 LINE L1 5000 5426 -768 188 186 17 0 chr15 31026744 31026803 -54668951 + (TA)n Simple_repeat Simple_repeat 1 60 0 419 228 60 11 chr15 31026806 31026951 -54668803 - L1MC4 LINE L1 -232 7763 7521 771 256 82 41 chr15 31026974 31027388 -54668366 - L1MC4a LINE L1 -1736 6072 5642 330 242 63 0 chr15 31028915 31029010 -54666744 + MIR SINE MIR 119 219 -43 426 286 31 52 chr15 31030019 31030211 -54665543 + MIR SINE MIR 8 195 -67 758 261 33 53 chr15 31030269 31030572 -54665182 - LTR16A1 LTR ERVL -3 454 158 546 309 68 62 chr15 31030702 31031071 -54664683 - L2 LINE L2 -64 3208 2838 216 218 0 36 chr15 31031234 31031289 -54664465 + (CTA)n Simple_repeat Simple_repeat 1 53 0 198 329 47 35 chr15 31031314 31031399 -54664355 + L2 LINE L2 3111 3196 -76 319 240 154 10 chr15 31031559 31031663 -54664091 - L2 LINE L2 -4 3268 3150 939 275 36 7 chr15 31031668 31031977 -54663777 + MER20B DNA MER1_type 4 321 -462 2596 184 19 4 chr15 31032043 31032570 -54663184 - L1MB2 LINE L1 -42 6129 5595 1296 227 42 26 chr15 31032599 31033027 -54662727 + MER20B DNA MER1_type 340 774 -9 2556 57 0 0 chr15 31033185 31033486 -54662268 + AluY SINE Alu 1 301 -10 1619 207 25 15 chr15 31033652 31034057 -54661697 + MER20B DNA MER1_type 373 781 -2 950 253 37 30 chr15 31034454 31034750 -54661004 - L2 LINE L2 0 3313 3016 2082 104 38 0 chr15 31035026 31035314 -54660440 + AluSx SINE Alu 1 299 -13 294 320 47 31 chr15 31035888 31036016 -54659738 + MIR SINE MIR 22 151 -111 190 288 75 38 chr15 31036083 31036163 -54659591 + L2 LINE L2 3182 3264 -8 225 0 0 0 chr15 31036575 31036600 -54659154 + (TG)n Simple_repeat Simple_repeat 2 26 0 250 239 15 15 chr15 31036968 31037035 -54658719 + (TA)n Simple_repeat Simple_repeat 1 67 0 2878 3 0 0 chr15 31037321 31037632 -54658122 + AluY SINE Alu 1 311 0 194 0 39 0 chr15 31038781 31038807 -54656947 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 326 296 70 0 chr15 31038958 31039073 -54656681 + MIR SINE MIR 90 212 -50 230 268 42 0 chr15 31039540 31039611 -54656143 - L2 LINE L2 -193 3079 3006 2922 210 112 38 chr15 31040279 31041269 -54654485 + Charlie1 DNA MER1_type 14 1076 -1685 1078 257 83 6 chr15 31041311 31041650 -54654104 + Charlie1 DNA MER1_type 1228 1592 -1169 2481 74 0 3 chr15 31042389 31042701 -54653053 + AluY SINE Alu 1 311 0 1186 199 9 38 chr15 31042701 31043018 -54652736 + Charlie1 DNA MER1_type 1583 1890 -871 304 218 55 55 chr15 31043597 31043707 -54652047 + L1M4 LINE L1 3084 3193 -2953 254 364 0 0 chr15 31043763 31043939 -54651815 + A-rich Low_complexity Low_complexity 1 176 0 304 209 114 85 chr15 31043953 31044154 -54651600 + L1M4 LINE L1 3074 3280 -2866 604 175 79 8 chr15 31044181 31044307 -54651447 + Charlie1 DNA MER1_type 1923 2057 -704 272 279 108 0 chr15 31044322 31044372 -54651382 - L1ME1 LINE L1 -22 6144 6101 198 0 0 0 chr15 31044372 31044394 -54651360 + (TA)n Simple_repeat Simple_repeat 1 22 0 272 279 108 0 chr15 31044394 31044454 -54651300 - L1ME1 LINE L1 -65 6101 6022 27 0 0 0 chr15 31044456 31044483 -54651271 + AT_rich Low_complexity Low_complexity 1 27 0 2104 174 12 2 chr15 31044491 31044893 -54650861 + L1MA7 LINE L1 5458 5863 -428 612 251 18 6 chr15 31044893 31045056 -54650698 - L1ME1 LINE L1 -148 6018 5854 2421 193 98 12 chr15 31045059 31045721 -54650033 + Charlie1 DNA MER1_type 2043 2761 0 321 26 0 0 chr15 31047588 31047626 -54648128 + (TG)n Simple_repeat Simple_repeat 2 39 0 645 230 19 8 chr15 31048157 31048365 -54647389 - L1MC3 LINE L1 -1 7784 6117 303 325 157 15 chr15 31048842 31049116 -54646638 + HAL1 LINE L1 878 1190 -1317 294 331 6 18 chr15 31049119 31049298 -54646456 + L1PA15 LINE L1 5935 6111 -50 207 204 45 0 chr15 31049903 31049947 -54645807 + L3 LINE CR1 1275 1320 -257 645 291 87 30 chr15 31050163 31050462 -54645292 - L2 LINE L2 -1 3312 2997 22 0 0 0 chr15 31050789 31050811 -54644943 + AT_rich Low_complexity Low_complexity 1 22 0 588 294 66 5 chr15 31051609 31051820 -54643934 - MIR SINE MIR -6 256 33 2190 194 71 12 chr15 31052803 31052845 -54642909 - MLT2B1 LTR ERVL 0 520 482 456 35 0 0 chr15 31052845 31052903 -54642851 + (CA)n Simple_repeat Simple_repeat 2 59 0 2190 194 71 12 chr15 31052903 31053351 -54642403 - MLT2B1 LTR ERVL -38 482 1 267 259 25 12 chr15 31053362 31053443 -54642311 + HsTC2 DNA Tc2 1311 1392 -506 235 268 12 12 chr15 31054983 31055065 -54640689 + (TA)n Simple_repeat Simple_repeat 2 83 0 2429 84 0 3 chr15 31055680 31055989 -54639765 + AluY SINE Alu 1 308 -3 5154 132 13 50 chr15 31056548 31057489 -54638265 - L1MC1 LINE L1 0 6333 5428 2180 138 28 25 chr15 31057861 31058224 -54637530 + THE1B LTR MaLR 1 364 0 333 0 0 0 chr15 31058361 31058398 -54637356 + (CA)n Simple_repeat Simple_repeat 1 37 0 328 278 63 31 chr15 31058415 31058582 -54637172 + MIR SINE MIR 36 206 -56 346 326 16 49 chr15 31058588 31058772 -54636982 + MER5B DNA MER1_type 1 178 0 2466 68 0 13 chr15 31060632 31060942 -54634812 - AluY SINE Alu -5 306 1 30 0 0 0 chr15 31061355 31061385 -54634369 + AT_rich Low_complexity Low_complexity 1 30 0 240 354 0 0 chr15 31061443 31061522 -54634232 - MER91 DNA MER1_type -62 128 50 421 313 27 38 chr15 31061631 31061816 -54633938 + MIR SINE MIR 38 218 -44 1985 135 0 26 chr15 31061888 31062192 -54633562 + AluSx SINE Alu 1 296 -16 189 0 0 0 chr15 31062192 31062213 -54633541 + (TA)n Simple_repeat Simple_repeat 2 22 0 2239 115 0 7 chr15 31062241 31062545 -54633209 + AluSq SINE Alu 1 302 -11 340 333 80 6 chr15 31063375 31063537 -54632217 + MIR SINE MIR 77 250 -12 396 323 0 8 chr15 31063552 31063676 -54632078 + MIR SINE MIR 20 142 -66 191 382 13 13 chr15 31065207 31065283 -54630471 - L2 LINE L2 -96 3176 3101 228 61 20 41 chr15 31066094 31066143 -54629611 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 747 264 6 0 chr15 31066572 31066746 -54629008 + MER45A DNA AcHobo 3 177 -1 705 318 29 16 chr15 31067411 31067656 -54628098 + MIR SINE MIR 14 261 -1 405 0 0 0 chr15 31067669 31067714 -54628040 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 449 244 57 88 chr15 31068558 31068751 -54627003 + MIR SINE MIR 76 262 0 333 289 101 19 chr15 31069016 31069175 -54626579 + MIR SINE MIR 36 207 -55 306 313 102 17 chr15 31069175 31069351 -54626403 - MIR SINE MIR -22 240 50 226 314 59 0 chr15 31070699 31070801 -54624953 - MER96 DNA MER1_type? 0 175 68 375 345 68 29 chr15 31071304 31071510 -54624244 + MIR SINE MIR 46 259 -3 388 231 29 0 chr15 31074839 31074943 -54620811 - MER103 DNA DNA -57 109 3 653 301 69 0 chr15 31075294 31075510 -54620244 - MIR SINE MIR -30 232 2 515 345 46 6 chr15 31075809 31075983 -54619771 + MIR3 SINE MIR 3 183 -25 2059 252 89 41 chr15 31076136 31076870 -54618884 - MER21B LTR ERV1 -51 812 44 273 294 98 33 chr15 31077089 31077181 -54618573 + L2 LINE L2 3144 3241 -31 1291 269 158 8 chr15 31078880 31079534 -54616220 + L2 LINE L2 2559 3313 0 1937 163 31 0 chr15 31079571 31079926 -54615828 + MER47A DNA MER2_type 1 366 0 2564 160 5 5 chr15 31079926 31080370 -54615384 - MLT1C LTR MaLR -2 465 22 1980 161 3 176 chr15 31080369 31080983 -54614771 - MLT2B3 LTR ERVL -7 508 1 * 225 215 46 62 chr15 31081770 31081835 -54613919 + L2 LINE L2 3249 3312 -1 3149 262 93 27 chr15 31082171 31082339 -54613415 - L1MCc LINE L1 -4080 3042 2886 189 0 0 0 chr15 31082339 31082360 -54613394 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 3149 262 93 27 chr15 31082360 31083696 -54612058 - L1MCc LINE L1 -4236 2886 1639 231 36 0 0 chr15 31083696 31083724 -54612030 + (TG)n Simple_repeat Simple_repeat 2 29 0 3149 262 93 27 chr15 31083724 31084861 -54610893 - L1MCc LINE L1 -5483 1639 17 231 269 19 0 chr15 31084927 31084979 -54610775 - MIR SINE MIR -133 75 23 571 166 18 24 chr15 31087068 31087237 -54608517 + CT-rich Low_complexity Low_complexity 3 170 0 24 0 0 0 chr15 31087683 31087707 -54608047 + AT_rich Low_complexity Low_complexity 1 24 0 16736 149 6 12 chr15 31088080 31088224 -54607530 + L1PA11 LINE L1 2264 2407 -3754 2106 112 0 14 chr15 31088224 31088540 -54607214 + AluSq SINE Alu 1 312 0 16736 149 6 12 chr15 31088540 31091628 -54604126 + L1PA11 LINE L1 2407 5476 -685 3859 68 2 2 chr15 31091628 31092128 -54603626 - L1PA8 LINE L1 -11 6161 5662 4930 92 11 11 chr15 31092245 31092959 -54602795 + L1PA11 LINE L1 5460 6173 -1 367 235 0 12 chr15 31092968 31093053 -54602701 - MER96B DNA MER1_type? -332 85 2 1547 173 111 4 chr15 31093189 31093460 -54602294 - AluSx SINE Alu -11 301 2 370 311 47 42 chr15 31093549 31093739 -54602015 - MIR SINE MIR -51 211 21 235 263 84 24 chr15 31093743 31093994 -54601760 + L1ME LINE L1 5068 5333 -813 598 295 47 7 chr15 31093997 31094309 -54601445 + L1ME LINE L1 5374 5696 -474 203 250 0 0 chr15 31094309 31094349 -54601405 + (CA)n Simple_repeat Simple_repeat 1 40 0 885 220 26 0 chr15 31094813 31095004 -54600750 + MLT1D LTR MaLR 304 499 -6 558 241 64 99 chr15 31095026 31095623 -54600131 + L1MEd LINE L1 682 1257 -4862 335 227 45 64 chr15 31095797 31095907 -54599847 + L1MEd LINE L1 1373 1480 -4651 996 177 103 29 chr15 31097764 31098007 -54597747 + MIR SINE MIR 2 262 0 350 275 126 22 chr15 31098098 31098280 -54597474 - L1ME3A LINE L1 -2 6168 5968 342 267 92 17 chr15 31098332 31098452 -54597302 - L1MC5 LINE L1 -50 7911 7783 202 271 51 0 chr15 31098633 31098692 -54597062 - MER5A DNA MER1_type -72 117 56 22 0 0 0 chr15 31099117 31099139 -54596615 + AT_rich Low_complexity Low_complexity 1 22 0 722 193 83 0 chr15 31100408 31100553 -54595201 - MER21B LTR ERV1 -379 484 328 828 217 11 21 chr15 31101054 31101243 -54594511 + MER5A DNA MER1_type 1 187 -2 528 309 100 13 chr15 31101352 31101582 -54594172 - MIR SINE MIR -6 256 7 230 296 84 0 chr15 31101749 31101820 -54593934 - L2 LINE L2 -1 3312 3236 248 323 31 31 chr15 31102114 31102210 -54593544 - L2 LINE L2 -17 3255 3160 330 375 62 0 chr15 31102612 31102788 -54592966 - L2 LINE L2 -189 3083 2897 508 284 80 17 chr15 31103910 31104086 -54591668 + MIR3 SINE MIR 20 206 -2 22 0 0 0 chr15 31104186 31104208 -54591546 + AT_rich Low_complexity Low_complexity 1 22 0 429 340 27 2 chr15 31104869 31105021 -54590733 + MIR3 SINE MIR 3 159 -49 339 234 110 55 chr15 31105237 31105382 -54590372 - L2 LINE L2 -5 3308 3156 281 301 12 36 chr15 31106479 31106562 -54589192 + L2 LINE L2 3149 3229 -43 2113 122 0 20 chr15 31106629 31106933 -54588821 + AluSc SINE Alu 1 298 -11 392 308 56 28 chr15 31107165 31107308 -54588446 + MIR3 SINE MIR 37 183 -25 638 285 124 34 chr15 31108270 31108491 -54587263 - MLT1H1 LTR MaLR -4 551 351 198 0 0 0 chr15 31108491 31108513 -54587241 + (TC)n Simple_repeat Simple_repeat 1 22 0 638 285 124 34 chr15 31108513 31108768 -54586986 - MLT1H1 LTR MaLR -204 351 32 24 0 0 0 chr15 31108829 31108853 -54586901 + AT_rich Low_complexity Low_complexity 1 24 0 372 205 197 0 chr15 31109448 31109575 -54586179 - MIR SINE MIR -60 202 51 231 170 0 0 chr15 31109833 31109880 -54585874 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 2009 137 11 29 chr15 31110957 31111307 -54584447 + MER2 DNA MER2_type 1 344 0 984 167 56 14 chr15 31112133 31112348 -54583406 + Charlie4 DNA MER1_type 60 283 -1678 599 207 32 27 chr15 31112349 31112537 -54583217 + Charlie4 DNA MER1_type 1773 1961 0 2023 132 17 3 chr15 31112557 31112853 -54582901 + AluSx SINE Alu 1 300 -12 233 317 97 23 chr15 31113195 31113814 -54581940 - L1MEd LINE L1 -3333 2796 2132 1216 249 32 46 chr15 31114116 31114554 -54581200 - MLT1D LTR MaLR -69 436 5 225 350 49 41 chr15 31114740 31114986 -54580768 - L1MEd LINE L1 -5664 455 208 484 161 46 0 chr15 31115289 31115376 -54580378 + MER58B DNA MER1_type 250 340 -1 197 354 38 0 chr15 31115798 31115877 -54579877 + MIR3 SINE MIR 121 202 -6 423 205 0 0 chr15 31115932 31116015 -54579739 + MIR SINE MIR 178 260 -2 419 286 106 89 chr15 31116468 31116863 -54578891 - LTR33 LTR ERVL 0 521 120 * 1464 200 75 52 chr15 31116861 31117050 -54578704 - MER31B LTR ERV1 -31 435 252 2153 124 124 18 chr15 31117050 31117437 -54578317 + MSTA LTR MaLR 1 428 0 1464 200 75 52 chr15 31117437 31117672 -54578082 - MER31B LTR ERV1 -214 252 1 208 191 95 0 chr15 31117673 31117715 -54578039 + MIR SINE MIR 59 104 -104 567 242 92 40 chr15 31117914 31118217 -54577537 + MLT1J LTR MaLR 1 302 -144 214 327 36 0 chr15 31118417 31118472 -54577282 - L2 LINE L2 -10 3303 3247 560 291 89 0 chr15 31119568 31119781 -54575973 - MIR SINE MIR -11 251 20 388 233 26 35 chr15 31120026 31120142 -54575612 - MIR SINE MIR -90 172 58 484 170 19 0 chr15 31120646 31120752 -54575002 - L1MA8 LINE L1 -5 6286 6179 243 257 29 29 chr15 31121565 31121668 -54574086 + MLT1I LTR MaLR 3 105 -304 241 239 80 0 chr15 31121668 31121756 -54573998 + LTR33 LTR ERVL 1 95 -426 2751 147 14 0 chr15 31121784 31122206 -54573548 - MSTA LTR MaLR 0 428 1 425 248 62 57 chr15 31123432 31123890 -54571864 - L1MC4a LINE L1 -7 6114 5660 773 154 0 0 chr15 31123947 31124064 -54571690 + AluJb SINE Alu 180 296 -16 310 316 0 29 chr15 31124066 31124205 -54571549 - HAL1 LINE L1 -11 2496 2362 * 455 241 51 99 chr15 31124203 31124421 -54571333 - HAL1 LINE L1 -409 2098 1906 2247 125 0 0 chr15 31124421 31124725 -54571029 - AluSx SINE Alu -8 304 1 455 241 51 99 chr15 31124725 31124901 -54570853 - HAL1 LINE L1 -601 1906 1723 367 258 117 8 chr15 31126084 31126204 -54569550 - MIR SINE MIR -107 155 23 405 264 28 0 chr15 31126465 31126571 -54569183 + MER81 DNA DNA 1 109 -5 270 322 21 56 chr15 31126577 31126720 -54569034 + LTR16A LTR ERVL 235 372 -78 215 220 33 88 chr15 31127907 31127998 -54567756 + MIR SINE MIR 126 211 -51 185 0 0 39 chr15 31128048 31128074 -54567680 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1953 114 93 0 chr15 31128496 31128776 -54566978 - AluSg SINE Alu -4 306 1 2129 252 29 36 chr15 31128859 31129475 -54566279 + L1MD3 LINE L1 4809 4963 -1183 1874 106 3 48 chr15 31129475 31129767 -54565987 + AluY SINE Alu 1 279 -32 2129 252 29 36 chr15 31129767 31130199 -54565555 + L1MD3 LINE L1 4963 5396 -750 276 102 322 0 chr15 31130204 31130263 -54565491 + MADE1 DNA Mariner 1 78 -2 371 132 0 77 chr15 31130265 31130311 -54565443 + L1MD3 LINE L1 5859 5896 -2099 2710 167 5 72 chr15 31130311 31130863 -54564891 - MLT2B2 LTR ERVL 0 515 1 371 132 0 77 chr15 31130863 31130907 -54564847 + L1MD3 LINE L1 5896 5942 -2053 466 239 18 28 chr15 31130909 31131018 -54564736 - MIR SINE MIR -147 115 8 216 362 53 14 chr15 31132083 31132290 -54563464 + L2 LINE L2 1883 2097 -1217 2567 150 44 2 chr15 31133724 31134176 -54561578 + MER31A LTR ERV1 1 471 -14 2211 102 3 3 chr15 31134177 31134470 -54561284 - AluSq SINE Alu -20 293 1 288 296 69 28 chr15 31134834 31134960 -54560794 + MIR3 SINE MIR 63 198 -10 632 296 76 6 chr15 31135195 31135422 -54560332 - MIR SINE MIR -6 256 20 707 260 17 6 chr15 31137140 31137313 -54558441 - MIR SINE MIR -86 176 2 340 354 113 50 chr15 31139104 31139926 -54555828 - L2 LINE L2 -410 2904 2031 324 276 112 60 chr15 31141399 31141533 -54554221 - MIR SINE MIR -120 142 2 307 310 186 0 chr15 31141701 31141814 -54553940 + L3 LINE CR1 1269 1402 -175 304 254 14 0 chr15 31141887 31141958 -54553796 - MIR SINE MIR -101 161 90 1172 106 6 0 chr15 31142157 31142336 -54553418 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2126 126 13 3 chr15 31142351 31142660 -54553094 - AluSx SINE Alu 0 312 1 398 338 44 38 chr15 31142770 31142930 -54552824 - L2 LINE L2 -2 3270 3110 421 301 175 0 chr15 31143379 31143585 -54552169 + MIR SINE MIR 13 254 -8 1686 187 17 0 chr15 31144806 31145095 -54550659 - AluJo SINE Alu -18 294 1 324 317 143 30 chr15 31145819 31146049 -54549705 + MIR SINE MIR 7 262 0 1671 191 10 7 chr15 31146449 31146737 -54549017 - AluJo SINE Alu -23 289 1 281 341 36 43 chr15 31148160 31148298 -54547456 - MIR3 SINE MIR -62 146 10 2395 241 52 69 chr15 31148580 31149720 -54546034 - MLT1B-int LTR MaLR -134 1237 1 1315 220 71 40 chr15 31149720 31150098 -54545656 - MLT1B LTR MaLR 0 390 1 431 310 0 0 chr15 31150338 31150451 -54545303 - MIR SINE MIR -85 177 65 440 219 133 0 chr15 31150465 31150570 -54545184 - L2 LINE L2 0 3313 3195 205 321 174 0 chr15 31150815 31150924 -54544830 - MIR SINE MIR -58 204 77 448 313 159 9 chr15 31152408 31152489 -54543265 - MIR SINE MIR -16 246 178 7098 42 16 5 chr15 31152489 31153426 -54542328 - L1PA7 LINE L1 0 6154 5212 448 313 159 9 chr15 31153426 31153558 -54542196 - MIR SINE MIR -84 178 1 268 186 42 24 chr15 31153878 31154045 -54541709 + (TA)n Simple_repeat Simple_repeat 1 170 0 395 165 5 77 chr15 31154071 31154265 -54541489 + (TA)n Simple_repeat Simple_repeat 1 180 0 216 239 0 60 chr15 31154276 31154410 -54541344 + (TA)n Simple_repeat Simple_repeat 1 126 0 2380 72 0 25 chr15 31154608 31154927 -54540827 - AluY SINE Alu 0 311 1 659 265 136 20 chr15 31155517 31155811 -54539943 + MLT1J LTR MaLR 9 336 -175 909 251 66 57 chr15 31156074 31156597 -54539157 - LTR38 LTR ERV1 0 541 31 1185 223 45 6 chr15 31157345 31157682 -54538072 + L1MC3 LINE L1 7436 7785 0 21 36 0 0 chr15 31157682 31157710 -54538044 + AT_rich Low_complexity Low_complexity 1 28 0 419 365 81 0 chr15 31158981 31159129 -54536625 - L2 LINE L2 -9 3263 3104 404 82 16 0 chr15 31160461 31160522 -54535232 + (CA)n Simple_repeat Simple_repeat 1 62 0 203 103 26 26 chr15 31160594 31160633 -54535121 + CT-rich Low_complexity Low_complexity 2 40 0 4415 154 21 59 chr15 31161840 31162861 -54532893 + L1MC3 LINE L1 6816 7774 -11 2422 93 0 3 chr15 31162864 31163174 -54532580 + AluSg SINE Alu 2 310 0 263 217 0 67 chr15 31164354 31164414 -54531340 + L3 LINE CR1 1500 1555 -22 2440 183 8 92 chr15 31164478 31164513 -54531241 - MLT2B3 LTR ERVL -6 548 512 195 100 0 0 chr15 31164513 31164543 -54531211 + (TA)n Simple_repeat Simple_repeat 1 30 0 2440 183 8 92 chr15 31164543 31165103 -54530651 - MLT2B3 LTR ERVL -42 512 3 5121 110 30 7 chr15 31165959 31166798 -54528956 - L1MA3 LINE L1 0 6305 5448 418 61 30 0 chr15 31166987 31167053 -54528701 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 732 304 62 4 chr15 31167809 31168036 -54527718 - MIR SINE MIR -19 243 4 1613 249 73 9 chr15 31168254 31168804 -54526950 - HsTC2 DNA Tc2 -3 1895 1311 1400 193 141 19 chr15 31168809 31169134 -54526620 + MLT2B1 LTR ERVL 114 489 -31 207 69 0 0 chr15 31169134 31169163 -54526591 + (CA)n Simple_repeat Simple_repeat 1 29 0 1400 193 141 19 chr15 31169163 31169199 -54526555 + MLT2B1 LTR ERVL 489 519 -1 743 238 43 22 chr15 31169253 31169438 -54526316 - MER5A DNA MER1_type 0 189 1 295 280 104 8 chr15 31169438 31169563 -54526191 - HsTC2 DNA Tc2 -1760 138 2 26 0 0 0 chr15 31169614 31169640 -54526114 + AT_rich Low_complexity Low_complexity 1 26 0 5430 16 0 0 chr15 31169640 31170254 -54525500 - L1PA3 LINE L1 0 6155 5542 327 77 31 15 chr15 31170400 31170465 -54525289 + (TA)n Simple_repeat Simple_repeat 2 67 0 220 262 167 0 chr15 31170535 31170619 -54525135 - L3 LINE CR1 -123 1454 1357 333 345 104 12 chr15 31171276 31171525 -54524229 + L2 LINE L2 201 472 -2842 1870 154 30 25 chr15 31171602 31171965 -54523789 - MLT1A1 LTR MaLR 0 365 1 314 358 14 39 chr15 31171994 31172201 -54523553 + L2 LINE L2 2467 2668 -646 181 293 102 18 chr15 31172406 31172544 -54523210 - MIR3 SINE MIR -6 202 50 490 265 136 12 chr15 31174522 31174684 -54521070 + MIR3 SINE MIR 23 204 -4 21 89 0 0 chr15 31175817 31175873 -54519881 + AT_rich Low_complexity Low_complexity 1 56 0 602 196 52 152 chr15 31175876 31176284 -54519470 + L1MC4a LINE L1 5402 5768 -394 * 807 158 87 11 chr15 31176279 31176350 -54519404 + L1MA9 LINE L1 6115 6179 -133 390 57 0 0 chr15 31176350 31176403 -54519351 + (TA)n Simple_repeat Simple_repeat 1 53 0 807 158 87 11 chr15 31176403 31176514 -54519240 + L1MA9 LINE L1 6179 6311 -1 731 314 20 0 chr15 31176591 31176846 -54518908 + L1ME3 LINE L1 5522 5781 -2027 1228 244 43 11 chr15 31176874 31177223 -54518531 + L1ME3 LINE L1 5775 6134 -28 234 344 76 66 chr15 31177603 31177905 -54517849 - L2 LINE L2 -2 3270 2966 318 26 0 0 chr15 31179285 31179324 -54516430 + (CA)n Simple_repeat Simple_repeat 2 40 0 1384 263 50 28 chr15 31179358 31180120 -54515634 - HERVL LTR ERVL -3591 2063 1275 369 261 39 15 chr15 31180127 31180257 -54515497 + L1M4 LINE L1 3043 3175 -2971 320 221 26 0 chr15 31180437 31180514 -54515240 - Tigger5 DNA MER2_type -2244 79 1 265 277 69 19 chr15 31180514 31180673 -54515081 + L1MC4a LINE L1 5834 6000 -1808 342 361 34 24 chr15 31180884 31181092 -54514662 + L1MC4a LINE L1 6429 6638 -1170 * 364 340 62 41 chr15 31181082 31181276 -54514478 + L1ME LINE L1 146 343 -5862 312 310 124 16 chr15 31181667 31181909 -54513845 + L1ME LINE L1 793 1060 -5336 644 285 72 29 chr15 31181940 31182526 -54513228 + L1ME LINE L1 1072 1682 -4714 263 328 0 8 chr15 31182605 31182724 -54513030 + L1ME LINE L1 1703 1820 -4576 21 36 0 0 chr15 31182848 31182876 -54512878 + AT_rich Low_complexity Low_complexity 1 28 0 971 294 125 13 chr15 31182893 31183655 -54512099 - L1M4 LINE L1 -1712 4434 3588 300 355 100 17 chr15 31183923 31184154 -54511600 - L1MEd LINE L1 -5700 419 170 312 210 0 58 chr15 31184323 31184401 -54511353 + MIR SINE MIR 88 102 -106 1745 151 51 43 chr15 31184401 31184773 -54510981 + THE1C LTR MaLR 1 375 0 312 210 0 58 chr15 31184773 31184813 -54510941 + MIR SINE MIR 102 143 -65 325 255 21 53 chr15 31185227 31185321 -54510433 - MIR SINE MIR -70 192 102 201 277 205 0 chr15 31187135 31187218 -54508536 - MER5B DNA MER1_type -78 100 1 719 247 71 6 chr15 31187238 31187408 -54508346 - MER5A DNA MER1_type 0 189 9 275 259 214 27 chr15 31187420 31187532 -54508222 + L2 LINE L2 3127 3259 -13 2216 95 0 7 chr15 31187675 31187992 -54507762 + AluSp SINE Alu 1 315 0 381 226 70 0 chr15 31189927 31190042 -54505712 + MIR SINE MIR 134 256 -6 701 340 21 4 chr15 31191019 31191260 -54504494 + MIR SINE MIR 10 254 -8 506 216 61 78 chr15 31191546 31191777 -54503977 - MER102b DNA MER1_type -11 330 104 966 219 17 9 chr15 31191814 31192047 -54503707 + MER96B DNA MER1_type? 1 235 -182 465 228 228 30 chr15 31192532 31192699 -54503055 + MIR SINE MIR 2 201 -61 7838 20 1 1 chr15 31192882 31194566 -54501188 - L1PA3 LINE L1 0 6155 4459 207 200 0 0 chr15 31194685 31194730 -54501024 + A-rich Low_complexity Low_complexity 1 45 0 316 197 98 66 chr15 31194930 31195052 -54500702 + MIR SINE MIR 14 140 -68 2234 180 34 10 chr15 31195635 31196051 -54499703 - MSTB LTR MaLR 0 426 1 281 265 0 41 chr15 31196468 31196566 -54499188 + CT-rich Low_complexity Low_complexity 2 95 0 274 284 14 0 chr15 31196579 31196653 -54499101 - L2 LINE L2 -5 3308 3234 560 274 122 39 chr15 31197059 31197314 -54498440 - L2 LINE L2 -13 3300 3025 234 280 27 13 chr15 31197332 31197407 -54498347 - MER5B DNA MER1_type -83 95 20 1115 214 5 0 chr15 31197849 31198059 -54497695 - MER58A DNA MER1_type -10 214 4 379 293 20 0 chr15 31198352 31198451 -54497303 + MIR3 SINE MIR 104 204 -4 252 140 20 20 chr15 31200019 31200069 -54495685 - L1MB3 LINE L1 -28 6155 6106 597 270 10 29 chr15 31200197 31200401 -54495353 - MIR SINE MIR -4 258 59 361 315 121 6 chr15 31200745 31200910 -54494844 + MIR SINE MIR 4 187 -75 230 315 54 0 chr15 31200952 31201044 -54494710 - L2 LINE L2 -2 3270 3174 562 271 47 12 chr15 31205244 31205422 -54490332 + MIR SINE MIR 37 218 -44 511 289 24 62 chr15 31206930 31207141 -54488613 + L2 LINE L2 3111 3313 0 884 329 58 22 chr15 31207335 31207883 -54487871 - L1MC4a LINE L1 -1927 5881 5314 22 56 0 0 chr15 31209345 31209381 -54486373 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chr15 31209707 31209735 -54486019 + AT_rich Low_complexity Low_complexity 1 28 0 228 283 211 33 chr15 31210415 31210567 -54485187 + MIR SINE MIR 20 198 -64 1642 210 34 41 chr15 31211583 31211676 -54484078 + LTR52 LTR ERVL 1 93 -328 2380 123 53 14 chr15 31211676 31212035 -54483719 - THE1C LTR MaLR 0 375 3 1642 210 34 41 chr15 31212035 31212355 -54483399 + LTR52 LTR ERVL 93 411 -10 882 245 69 0 chr15 31212469 31212673 -54483081 - MER58A DNA MER1_type -6 218 1 910 280 81 37 chr15 31214341 31214791 -54480963 - MLT1J2 LTR MaLR 0 450 10 1832 163 0 7 chr15 31215239 31215546 -54480208 + AluJb SINE Alu 1 305 -7 21 0 0 0 chr15 31215717 31215738 -54480016 + AT_rich Low_complexity Low_complexity 1 21 0 436 218 0 0 chr15 31216063 31216141 -54479613 + MER21B LTR ERV1 12 89 -774 709 234 26 13 chr15 31216196 31216350 -54479404 + MER21B LTR ERV1 98 253 -610 1132 207 25 54 chr15 31216355 31216635 -54479119 + MER21B LTR ERV1 479 750 -113 611 286 50 54 chr15 31217093 31217334 -54478420 + MIR SINE MIR 2 241 -21 21 0 0 0 chr15 31217826 31217847 -54477907 + AT_rich Low_complexity Low_complexity 1 21 0 294 256 165 16 chr15 31217869 31217990 -54477764 - MIR SINE MIR -50 212 74 331 182 190 66 chr15 31218371 31218492 -54477262 + MIR SINE MIR 124 259 -3 328 314 86 0 chr15 31218691 31218831 -54476923 + ERVL-F LTR ERVL 1624 1775 -3989 288 323 31 0 chr15 31218806 31218936 -54476818 + ERVL-F LTR ERVL 1704 1837 -3159 * 1474 254 80 41 chr15 31218951 31219515 -54476239 + ERVL-F LTR ERVL 5156 5741 -23 1488 270 153 3 chr15 31219528 31220105 -54475649 + MLT2F LTR ERVL 1 663 0 238 338 115 14 chr15 31220395 31220534 -54475220 - MIR3 SINE MIR -48 160 8 206 250 0 0 chr15 31222821 31222865 -54472889 + (CAT)n Simple_repeat Simple_repeat 3 46 0 392 267 75 41 chr15 31223516 31223662 -54472092 + MER69A DNA AcHobo 26 176 -1 317 233 57 0 chr15 31223673 31223782 -54471972 - MIR SINE MIR -71 191 73 279 374 98 5 chr15 31224819 31225033 -54470721 + L2 LINE L2 2819 3052 -261 496 254 56 35 chr15 31225634 31225776 -54469978 + L2 LINE L2 3128 3272 0 418 301 49 14 chr15 31225895 31226038 -54469716 - MIR SINE MIR -107 155 8 335 335 37 19 chr15 31226085 31226246 -54469508 - MIR SINE MIR 0 262 99 346 183 14 14 chr15 31226765 31226836 -54468918 - MLT1C LTR MaLR 0 505 435 181 111 0 28 chr15 31226897 31226933 -54468821 - L2 LINE L2 0 3313 3279 1004 225 119 85 chr15 31226943 31227214 -54468540 - MLT1C LTR MaLR -76 391 131 2010 102 27 24 chr15 31227214 31227537 -54468217 - AluSg1 SINE Alu 0 309 2 1008 61 27 0 chr15 31227537 31227685 -54468069 + (TTTC)n Simple_repeat Simple_repeat 2 153 0 2019 112 0 21 chr15 31227686 31227973 -54467781 - AluSq SINE Alu -32 281 1 2569 55 3 3 chr15 31227982 31228291 -54467463 - AluY SINE Alu -2 309 1 1004 225 119 85 chr15 31228291 31228384 -54467370 - MLT1C LTR MaLR -343 124 1 2233 165 11 22 chr15 31228473 31228842 -54466912 + MLT1A1 LTR MaLR 1 365 0 266 312 138 7 chr15 31228889 31229027 -54466727 - L2 LINE L2 -13 3259 3104 228 339 80 27 chr15 31229101 31229213 -54466541 - MIR3 SINE MIR -52 156 39 365 244 98 0 chr15 31230211 31230334 -54465420 - MER103 DNA DNA -24 142 8 550 345 25 8 chr15 31230601 31230836 -54464918 - MIR SINE MIR -17 245 7 23 0 0 0 chr15 31230993 31231016 -54464738 + AT_rich Low_complexity Low_complexity 1 23 0 1654 115 33 29 chr15 31231030 31231272 -54464482 - THE1C LTR MaLR 0 375 151 2409 128 16 25 chr15 31231272 31231639 -54464115 - THE1B LTR MaLR 0 364 1 1654 115 33 29 chr15 31231639 31231673 -54464081 - THE1C LTR MaLR -224 151 119 219 333 0 14 chr15 31231805 31231877 -54463877 + L2 LINE L2 3203 3273 -40 23 54 0 0 chr15 31232227 31232264 -54463490 + AT_rich Low_complexity Low_complexity 1 37 0 207 302 32 0 chr15 31232862 31232925 -54462829 + L2 LINE L2 2267 2331 -983 1590 274 81 35 chr15 31233609 31234266 -54461488 + L2 LINE L2 2127 2813 -501 2219 121 38 0 chr15 31234279 31234594 -54461160 + MER1B DNA MER1_type 1 327 -12 2159 174 29 3 chr15 31234594 31234978 -54460776 + L1MC2 LINE L1 5940 6333 -11 345 294 52 43 chr15 31234992 31235229 -54460525 + L2 LINE L2 2782 3035 -278 311 364 7 58 chr15 31235494 31235648 -54460106 + L2 LINE L2 3127 3272 0 246 62 0 0 chr15 31237263 31237295 -54458459 + (TCCA)n Simple_repeat Simple_repeat 4 35 0 237 108 0 0 chr15 31237297 31237334 -54458420 + (CA)n Simple_repeat Simple_repeat 2 38 0 228 293 8 73 chr15 31238645 31238768 -54456986 + MIR3 SINE MIR 55 169 -39 782 259 74 4 chr15 31238902 31239145 -54456609 + L1ME3A LINE L1 5807 6066 -104 2677 111 58 23 chr15 31239152 31239585 -54456169 - LTR7 LTR ERV1 -2 448 1 2496 107 45 35 chr15 31239585 31240179 -54455575 - HERVH LTR ERV1 0 7713 5600 4401 142 3 1 chr15 31240180 31240841 -54454913 - HERVH LTR ERV1 -2564 5149 4488 3344 120 6 2 chr15 31240843 31241343 -54454411 - HERVH LTR ERV1 -3720 3993 3492 897 143 20 0 chr15 31241333 31241480 -54454274 - HERVH LTR ERV1 -4423 3290 3141 * 15528 100 48 48 chr15 31241475 31244408 -54451346 - HERVH LTR ERV1 -4726 2987 1 2753 107 58 21 chr15 31244410 31244842 -54450912 - LTR7 LTR ERV1 -2 448 1 306 203 14 27 chr15 31244859 31244933 -54450821 + L1ME3A LINE L1 6084 6156 -14 750 250 44 32 chr15 31244993 31245245 -54450509 - MIR SINE MIR -3 259 5 2224 110 0 16 chr15 31247939 31248249 -54447505 + AluSg SINE Alu 1 305 -5 1076 258 203 32 chr15 31248990 31249505 -54446249 - MLT1G1 LTR MaLR 0 555 1 287 323 76 40 chr15 31249510 31249708 -54446046 - MLT1G1-int LTR MaLR -5 1366 1162 1292 258 118 47 chr15 31249713 31250179 -54445575 - MLT1G1 LTR MaLR -94 501 3 749 244 12 12 chr15 31250179 31250347 -54445407 + L3 LINE CR1 1409 1576 -1 6277 95 13 0 chr15 31251876 31253007 -54442747 - L1PA8 LINE L1 -2 6170 5024 556 308 72 28 chr15 31253129 31253379 -54442375 - MIR SINE MIR 0 262 2 290 299 64 37 chr15 31254757 31254944 -54440810 + L2 LINE L2 2076 2267 -1047 2012 196 58 23 chr15 31255608 31256092 -54439662 + MLT1D LTR MaLR 1 501 -4 538 366 100 30 chr15 31256138 31256800 -54438954 + L2 LINE L2 156 863 -2451 498 313 109 47 chr15 31256882 31257349 -54438405 + L2 LINE L2 2378 2873 -441 1343 217 16 13 chr15 31258636 31258954 -54436800 - MER58B DNA MER1_type -22 319 1 259 191 183 38 chr15 31261410 31261541 -54434213 + L1ME4a LINE L1 5685 5834 -287 237 276 46 0 chr15 31261633 31261720 -54434034 + L1ME4a LINE L1 5965 6055 -66 260 324 20 0 chr15 31263130 31263232 -54432522 - MER117 DNA MER1_type -56 141 38 553 318 33 21 chr15 31264686 31264928 -54430826 - MIR SINE MIR 0 262 18 333 285 15 0 chr15 31265378 31265515 -54430239 - MER117 DNA MER1_type -55 142 4 317 240 0 135 chr15 31265521 31265625 -54430129 + MIR SINE MIR 37 126 -82 321 292 67 28 chr15 31265777 31265930 -54429824 + MIR SINE MIR 30 188 -74 186 196 304 11 chr15 31266353 31266445 -54429309 - L2 LINE L2 -6 3266 3148 26 30 0 0 chr15 31266729 31266762 -54428992 + AT_rich Low_complexity Low_complexity 1 33 0 516 291 77 5 chr15 31266763 31266959 -54428795 - L1ME3A LINE L1 -58 6112 5903 200 206 0 0 chr15 31268651 31268685 -54427069 + (TATATG)n Simple_repeat Simple_repeat 6 39 0 1456 178 49 104 chr15 31270434 31270961 -54424793 + LTR54B LTR ERV1 1 498 0 395 300 118 61 chr15 31271094 31271638 -54424116 - L2 LINE L2 -4 3309 2720 318 106 0 0 chr15 31271638 31271685 -54424069 + (ATATG)n Simple_repeat Simple_repeat 2 48 0 395 300 118 61 chr15 31271685 31271797 -54423957 - L2 LINE L2 -593 2720 2616 230 254 66 77 chr15 31271953 31272134 -54423620 + MIR SINE MIR 84 262 0 222 37 0 0 chr15 31273298 31273325 -54422429 + (TC)n Simple_repeat Simple_repeat 1 27 0 360 0 0 0 chr15 31273327 31273367 -54422387 + (TG)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr15 31273464 31273484 -54422270 + (A)n Simple_repeat Simple_repeat 1 20 0 249 296 111 12 chr15 31273673 31273754 -54422000 - L2 LINE L2 -34 3279 3191 525 283 19 13 chr15 31273783 31273942 -54421812 - MIR SINE MIR -52 210 51 1328 216 115 12 chr15 31274047 31274385 -54421369 - MLT1A2 LTR MaLR -1 373 1 265 305 74 0 chr15 31275561 31275656 -54420098 - MIR SINE MIR -57 205 104 230 315 41 14 chr15 31275691 31275764 -54419990 + L2 LINE L2 3176 3250 -22 236 275 22 22 chr15 31276430 31276521 -54419233 + MIR3 SINE MIR 106 196 -12 264 308 75 19 chr15 31278184 31278291 -54417463 - L2 LINE L2 -24 3289 3177 746 279 70 45 chr15 31278471 31279029 -54416725 - MER115 DNA AcHobo -26 667 3 3739 283 94 19 chr15 31279052 31280382 -54415372 + L2 LINE L2 368 1825 -1489 2346 35 74 0 chr15 31280382 31280665 -54415089 - AluY SINE Alu -7 304 1 3739 283 94 19 chr15 31280665 31280828 -54414926 + L2 LINE L2 1825 1974 -1340 212 184 0 20 chr15 31280996 31281045 -54414709 + CT-rich Low_complexity Low_complexity 1 48 0 215 31 31 0 chr15 31281410 31281442 -54414312 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 3841 7 0 0 chr15 31281442 31281872 -54413882 - L1PA2 LINE L1 -18 6137 5708 203 147 0 0 chr15 31283207 31283241 -54412513 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 288 278 38 53 chr15 31283287 31283420 -54412334 + MIR SINE MIR 85 215 -47 183 194 0 0 chr15 31284042 31284073 -54411681 - L3 LINE CR1 -1429 148 118 886 179 92 15 chr15 31284221 31284416 -54411338 - MER6B DNA MER2_type 0 210 1 1053 324 147 9 chr15 31285027 31285573 -54410181 + L3 LINE CR1 946 1566 -11 748 156 47 8 chr15 31285849 31285977 -54409777 + L1MC1 LINE L1 6193 6325 -8 794 319 95 4 chr15 31286079 31286540 -54409214 - LTR33 LTR ERVL -17 504 2 2188 105 0 0 chr15 31287778 31288054 -54407700 + AluSx SINE Alu 7 282 -30 211 315 62 69 chr15 31289333 31289463 -54406291 + L2 LINE L2 2726 2854 -460 238 381 144 0 chr15 31289549 31289667 -54406087 - L2 LINE L2 -1 3271 3137 873 339 53 18 chr15 31289792 31290227 -54405527 - L2 LINE L2 -303 3010 2565 506 277 65 82 chr15 31290256 31290548 -54405206 + L2 LINE L2 2986 3272 0 203 152 0 0 chr15 31291125 31291158 -54404596 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 695 194 0 23 chr15 31291167 31291296 -54404458 + Tigger3(Golem) DNA MER2_type 27 152 -2877 * 1241 145 77 5 chr15 31291291 31291512 -54404242 + Tigger3(Golem) DNA MER2_type 2802 3038 0 180 200 0 0 chr15 31291512 31291552 -54404202 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 252 0 0 0 chr15 31291567 31291595 -54404159 + (CA)n Simple_repeat Simple_repeat 2 29 0 480 226 35 0 chr15 31291801 31291916 -54403838 + MIR SINE MIR 98 216 -46 427 338 88 48 chr15 31291912 31292312 -54403442 - L2 LINE L2 -339 2975 2560 * 546 248 186 0 chr15 31292834 31292859 -54402895 - MIR SINE MIR -32 230 211 351 0 0 0 chr15 31292859 31292898 -54402856 + (CA)n Simple_repeat Simple_repeat 2 40 0 546 248 186 0 chr15 31292898 31293017 -54402737 - MIR SINE MIR -51 211 59 283 234 70 67 chr15 31295022 31295153 -54400601 + MIR SINE MIR 30 166 -42 455 200 240 17 chr15 31295659 31295834 -54399920 - LTR50 LTR ERVL -27 768 555 * 697 246 219 8 chr15 31295828 31296185 -54399569 - LTR50 LTR ERVL -353 442 11 2373 52 0 7 chr15 31296432 31296719 -54399035 + AluY SINE Alu 21 305 -6 2157 92 10 3 chr15 31296721 31297013 -54398741 + AluSx SINE Alu 1 294 -18 1183 78 0 18 chr15 31297030 31297175 -54398579 + MER107 DNA MER1_type 1 144 -53 182 36 0 36 chr15 31297175 31297203 -54398551 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1183 78 0 18 chr15 31297203 31297223 -54398531 + MER107 DNA MER1_type 144 163 -34 265 336 72 8 chr15 31297291 31297416 -54398338 - L2 LINE L2 -495 2819 2687 652 242 63 83 chr15 31297705 31298068 -54397686 - L1MC/D LINE L1 -2174 5634 5279 239 282 107 0 chr15 31298181 31298330 -54397424 - L1MC/D LINE L1 -1097 5049 4885 36 40 0 0 chr15 31298366 31298416 -54397338 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr15 31298688 31298709 -54397045 + AT_rich Low_complexity Low_complexity 1 21 0 249 190 35 0 chr15 31300362 31300420 -54395334 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 997 212 23 18 chr15 31300434 31300651 -54395103 - MER20 DNA MER1_type -1 218 1 275 323 251 10 chr15 31300725 31300920 -54394834 - MIR SINE MIR -17 245 4 182 326 0 0 chr15 31301127 31301173 -54394581 + L2 LINE L2 3223 3268 -4 333 260 114 16 chr15 31301790 31301913 -54393841 - MIR SINE MIR -97 165 31 2535 108 31 0 chr15 31301954 31302307 -54393447 + THE1B LTR MaLR 1 364 0 284 329 75 25 chr15 31303561 31303722 -54392032 - MIR SINE MIR -65 197 29 924 169 106 29 chr15 31303742 31303949 -54391805 - MER58A DNA MER1_type -1 223 1 306 288 93 60 chr15 31304139 31304354 -54391400 + MIR SINE MIR 20 241 -21 978 195 12 1 chr15 31304354 31304607 -54391147 - MLT1A1 LTR MaLR 0 365 75 1087 249 123 37 chr15 31304758 31305188 -54390566 + MLT1L LTR MaLR 142 608 -7 234 418 9 18 chr15 31305189 31305299 -54390455 + MIR3 SINE MIR 51 159 -49 1113 192 86 13 chr15 31305405 31305707 -54390047 + MER33 DNA MER1_type 1 324 0 236 326 0 0 chr15 31306354 31306403 -54389351 + MER58 DNA MER1_type 1 49 -292 * 320 215 0 0 chr15 31306399 31306464 -54389290 + MER58 DNA MER1_type 2356 2420 0 253 226 16 0 chr15 31306482 31306544 -54389210 + GA-rich Low_complexity Low_complexity 1 63 0 321 157 24 24 chr15 31306544 31306627 -54389127 + A-rich Low_complexity Low_complexity 5 87 0 207 0 0 0 chr15 31306911 31306934 -54388820 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 7874 13 0 0 chr15 31306936 31308479 -54387275 - L1PA2 LINE L1 -2 6153 4611 7265 31 0 0 chr15 31308479 31309341 -54386413 + L1P LINE L1 3584 4445 -1701 801 119 19 127 chr15 31309469 31309838 -54385916 + L1P LINE L1 4289 4617 -1529 319 286 52 26 chr15 31309908 31310062 -54385692 - L1M4 LINE L1 -3153 2993 2836 29 28 0 0 chr15 31310192 31310228 -54385526 + AT_rich Low_complexity Low_complexity 1 36 0 1211 170 18 31 chr15 31310622 31310846 -54384908 + AluJb SINE Alu 88 308 -4 429 286 75 57 chr15 31310988 31311320 -54384434 - L1 LINE L1 -1542 4604 4267 2567 115 0 3 chr15 31311507 31311872 -54383882 - THE1B LTR MaLR 0 364 1 896 138 33 7 chr15 31312177 31312329 -54383425 - MLT2C2 LTR ERVL -213 251 96 2473 94 5 27 chr15 31312339 31312712 -54383042 - L1PB1 LINE L1 -7 6144 5780 457 167 16 0 chr15 31312715 31312841 -54382913 + (TA)n Simple_repeat Simple_repeat 2 129 0 6189 179 11 6 chr15 31312842 31314669 -54381085 - L1PB1 LINE L1 -353 5798 3970 673 132 9 0 chr15 31314669 31314775 -54380979 - MLT2C2 LTR ERVL -357 107 1 3310 58 2 0 chr15 31315357 31315812 -54379942 + L1PA8 LINE L1 5737 6192 0 365 276 0 16 chr15 31316130 31316253 -54379501 - MER94 DNA DNA -9 125 5 1002 136 36 54 chr15 31317271 31317492 -54378262 + MER20 DNA MER1_type 1 217 -2 619 302 67 11 chr15 31318344 31318577 -54377177 + MIR SINE MIR 21 260 -2 1776 127 0 4 chr15 31319339 31319583 -54376171 - AluSq SINE Alu -70 243 1 1565 267 174 33 chr15 31319596 31320602 -54375152 - HAL1 LINE L1 -240 2267 1120 861 125 132 0 chr15 31320603 31320739 -54375015 - AluSg/x SINE Alu -22 288 135 279 241 0 0 chr15 31320796 31320850 -54374904 + L2 LINE L2 3223 3276 -37 225 0 0 0 chr15 31320858 31320883 -54374871 + (A)n Simple_repeat Simple_repeat 1 25 0 2461 156 16 5 chr15 31320938 31320978 -54374776 - L1MB3 LINE L1 -131 6052 6013 1357 234 112 30 chr15 31320978 31321584 -54374170 - L1MD2 LINE L1 -355 6004 5338 962 304 177 10 chr15 31321608 31322099 -54373655 - HAL1 LINE L1 -1886 621 49 1911 131 32 0 chr15 31322549 31322919 -54372835 - AluSx SINE Alu 0 379 1 264 256 25 76 chr15 31323452 31323588 -54372166 - MIR SINE MIR -63 145 24 368 136 117 0 chr15 31326192 31326295 -54369459 + MER96B DNA MER1_type? 65 179 -238 22 56 0 0 chr15 31327104 31327140 -54368614 + AT_rich Low_complexity Low_complexity 1 36 0 257 203 0 0 chr15 31327717 31327781 -54367973 + L1MC4 LINE L1 6640 6703 -1339 189 0 0 0 chr15 31327791 31327812 -54367942 + (CA)n Simple_repeat Simple_repeat 2 22 0 26 0 0 0 chr15 31327863 31327889 -54367865 + AT_rich Low_complexity Low_complexity 1 26 0 300 342 56 12 chr15 31328540 31328701 -54367053 + MARNA DNA Mariner 16 183 -403 207 220 0 0 chr15 31330676 31330726 -54365028 + GA-rich Low_complexity Low_complexity 4 53 0 21 36 0 0 chr15 31334775 31334803 -54360951 + AT_rich Low_complexity Low_complexity 1 28 0 242 29 29 0 chr15 31336249 31336284 -54359470 + (GA)n Simple_repeat Simple_repeat 2 37 0 183 246 0 66 chr15 31338383 31338444 -54357310 - L2 LINE L2 0 3313 3257 211 365 43 9 chr15 31339007 31339122 -54356632 - L2 LINE L2 -10 3303 3185 183 183 0 100 chr15 31340755 31340815 -54354939 + L3 LINE CR1 898 951 -626 180 0 0 0 chr15 31342066 31342086 -54353668 + (TA)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr15 31342093 31342121 -54353633 + AT_rich Low_complexity Low_complexity 1 28 0 404 234 73 36 chr15 31342209 31342346 -54353408 + MIR3 SINE MIR 51 192 -16 4974 150 28 3 chr15 31344975 31345844 -54349910 + L1MA4 LINE L1 5402 6291 -9 213 392 42 39 chr15 31346561 31346821 -54348933 + L2 LINE L2 2823 3083 -189 637 265 39 29 chr15 31350164 31350368 -54345386 + MIR SINE MIR 57 262 0 22 0 0 0 chr15 31350780 31350802 -54344952 + AT_rich Low_complexity Low_complexity 1 22 0 316 322 60 38 chr15 31351649 31351832 -54343922 + L1M2 LINE L1 2325 2511 -4338 498 344 122 33 chr15 31352474 31353302 -54342452 + L1M2 LINE L1 2843 3744 -3104 42070 35 21 5 chr15 31353308 31359357 -54336397 + L1PA2 LINE L1 4 6155 0 469 305 29 42 chr15 31359357 31359596 -54336158 + L1M2 LINE L1 3879 4114 -2734 381 293 44 40 chr15 31359638 31359887 -54335867 + L1M2 LINE L1 4605 4854 -1994 1605 86 10 0 chr15 31359901 31360110 -54335644 - AluSp SINE Alu -102 211 1 288 323 116 26 chr15 31360126 31360281 -54335473 - L2 LINE L2 -2 3270 3102 209 33 33 0 chr15 31360613 31360643 -54335111 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 286 304 40 54 chr15 31361782 31361930 -54333824 - L2 LINE L2 0 3313 3168 260 345 42 14 chr15 31362101 31362243 -54333511 - MIR SINE MIR -55 207 62 235 276 103 35 chr15 31362739 31362826 -54332928 - L2 LINE L2 -11 3261 3169 1099 205 42 5 chr15 31362857 31363072 -54332682 - MER58A DNA MER1_type 0 224 2 638 298 69 67 chr15 31363439 31364071 -54331683 - L2 LINE L2 -2 3311 2679 264 77 0 0 chr15 31364529 31364568 -54331186 + (CA)n Simple_repeat Simple_repeat 2 40 0 240 86 0 0 chr15 31364808 31364843 -54330911 + (TG)n Simple_repeat Simple_repeat 2 36 0 937 241 51 5 chr15 31367531 31367726 -54328028 + MER63A DNA MER1_type 7 210 0 233 360 65 20 chr15 31367733 31367886 -54327868 - MIR SINE MIR -102 160 1 213 174 22 22 chr15 31369505 31369551 -54326203 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 347 341 12 17 chr15 31370049 31370222 -54325532 + MER117 DNA MER1_type 6 177 -20 182 296 136 34 chr15 31370278 31370366 -54325388 + MIR3 SINE MIR 86 182 -26 25 65 0 0 chr15 31373973 31374019 -54321735 + AT_rich Low_complexity Low_complexity 1 46 0 309 268 304 0 chr15 31374199 31374311 -54321443 + MER5A DNA MER1_type 44 189 0 683 258 0 22 chr15 31374319 31374501 -54321253 + MER5B DNA MER1_type 1 178 0 23 0 0 0 chr15 31375295 31375318 -54320436 + AT_rich Low_complexity Low_complexity 1 23 0 24 41 0 20 chr15 31375435 31375463 -54320291 + AT_rich Low_complexity Low_complexity 1 29 -19 910 44 0 0 chr15 31375463 31375577 -54320177 - L1PA14 LINE L1 -3 6158 6045 24 41 0 20 chr15 31375577 31375597 -54320157 + AT_rich Low_complexity Low_complexity 29 48 0 23 54 0 0 chr15 31376322 31376359 -54319395 + AT_rich Low_complexity Low_complexity 1 37 0 195 424 0 17 chr15 31376557 31376675 -54319079 + MIR SINE MIR 21 136 -72 269 347 100 13 chr15 31376847 31376997 -54318757 - MER5A DNA MER1_type -11 178 16 817 323 81 0 chr15 31377530 31377902 -54317852 - L1MC4a LINE L1 -1896 5912 5511 529 245 80 80 chr15 31378079 31378316 -54317438 - MIR SINE MIR -14 248 12 185 359 28 69 chr15 31378300 31378517 -54317237 - L2 LINE L2 -721 2593 2386 * 22 88 0 0 chr15 31379819 31379876 -54315878 + AT_rich Low_complexity Low_complexity 1 57 0 206 121 0 0 chr15 31380063 31380096 -54315658 + (T)n Simple_repeat Simple_repeat 1 33 0 21 89 0 0 chr15 31380140 31380196 -54315558 + AT_rich Low_complexity Low_complexity 1 56 0 398 314 108 36 chr15 31380407 31380713 -54315041 - L3 LINE CR1 -108 1469 1142 1317 118 4 13 chr15 31381693 31381921 -54313833 - L1MA8 LINE L1 0 6291 6066 3759 127 26 17 chr15 31381930 31382845 -54312909 + L1PA12 LINE L1 5275 6145 -21 4458 144 17 17 chr15 31382857 31383968 -54311786 - L1MA8 LINE L1 -219 6072 4963 416 229 25 0 chr15 31384042 31384160 -54311594 + L1M4 LINE L1 5042 5162 -984 2255 105 0 0 chr15 31385471 31385766 -54309988 - AluSx SINE Alu -17 295 1 273 248 0 74 chr15 31385776 31385897 -54309857 - HsTC2 DNA Tc2 -1141 757 646 266 233 0 0 chr15 31386042 31386102 -54309652 - HsTC2 DNA Tc2 -1619 279 220 386 297 25 0 chr15 31386271 31386389 -54309365 - L2 LINE L2 0 3313 3193 251 236 0 0 chr15 31386389 31386444 -54309310 - HsTC2 DNA Tc2 -1821 77 23 21 0 0 0 chr15 31387168 31387189 -54308565 + AT_rich Low_complexity Low_complexity 1 21 0 320 0 25 0 chr15 31387635 31387675 -54308079 + (CA)n Simple_repeat Simple_repeat 2 42 0 250 235 29 0 chr15 31387681 31387749 -54308005 + (TA)n Simple_repeat Simple_repeat 2 71 0 334 189 111 22 chr15 31388251 31388341 -54307413 + MIR SINE MIR 119 216 -46 398 300 58 58 chr15 31389304 31389544 -54306210 - MER102a DNA MER1_type -10 320 81 588 349 34 13 chr15 31390733 31390968 -54304786 - L2 LINE L2 0 3272 3033 278 268 56 0 chr15 31391057 31391128 -54304626 + L2 LINE L2 3198 3272 0 285 379 19 28 chr15 31391136 31391347 -54304407 - L2 LINE L2 -358 2956 2748 243 0 0 0 chr15 31391372 31391399 -54304355 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 200 328 94 0 chr15 31391840 31391904 -54303850 - L2 LINE L2 -565 2749 2680 445 314 54 32 chr15 31392206 31392391 -54303363 + MIR3 SINE MIR 18 206 -2 27 49 0 0 chr15 31394535 31394576 -54301178 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr15 31395626 31395654 -54300100 + AT_rich Low_complexity Low_complexity 1 28 0 186 301 11 65 chr15 31395754 31395847 -54299907 + MIR SINE MIR 57 144 -118 26 50 0 0 chr15 31397130 31397170 -54298584 + AT_rich Low_complexity Low_complexity 1 40 0 793 210 60 86 chr15 31397642 31397751 -54298003 + LTR48B LTR ERV1 385 495 -149 1963 108 44 80 chr15 31397751 31398138 -54297616 - THE1C LTR MaLR 0 375 3 793 210 60 86 chr15 31398138 31398295 -54297459 + LTR48B LTR ERV1 495 644 0 1053 287 36 25 chr15 31399608 31399967 -54295787 + MER20B DNA MER1_type 6 368 -415 390 189 61 1 chr15 31400094 31400268 -54295486 + MER20B DNA MER1_type 537 743 -40 335 363 96 6 chr15 31400846 31401003 -54294751 - L2 LINE L2 0 3272 3102 194 269 0 58 chr15 31401064 31401116 -54294638 + L2 LINE L2 3209 3257 -15 302 360 7 39 chr15 31401580 31401733 -54294021 - L2 LINE L2 -159 3113 2966 779 293 11 5 chr15 31401985 31402176 -54293578 - MIR SINE MIR -69 193 2 226 255 21 96 chr15 31402206 31402300 -54293454 - L2 LINE L2 0 3272 3186 206 323 101 10 chr15 31403262 31403361 -54292393 + L2 LINE L2 3203 3310 -3 310 221 26 26 chr15 31404647 31404760 -54290994 - Charlie7 DNA MER1_type -57 2555 2443 526 63 25 0 chr15 31404762 31404841 -54290913 + (CA)n Simple_repeat Simple_repeat 2 82 0 565 299 149 10 chr15 31404879 31405167 -54290587 - Charlie7 DNA MER1_type -2135 477 150 261 290 93 9 chr15 31405222 31405329 -54290425 + L2 LINE L2 2720 2835 -479 320 321 69 8 chr15 31406444 31406575 -54289179 + MIR SINE MIR 7 145 -117 1564 180 0 0 chr15 31406643 31406898 -54288856 + AluJb SINE Alu 48 302 -10 25 51 0 0 chr15 31406960 31406999 -54288755 + AT_rich Low_complexity Low_complexity 1 39 0 937 189 0 75 chr15 31407696 31407897 -54287857 + AluJb SINE Alu 84 269 -43 546 187 0 9 chr15 31408409 31408516 -54287238 - FLAM_A SINE Alu -16 126 21 353 210 0 0 chr15 31410006 31410068 -54285686 + Tigger5 DNA MER2_type 2256 2317 -6 326 241 13 13 chr15 31410069 31410148 -54285606 - Tigger5 DNA MER2_type -2243 80 2 256 135 0 0 chr15 31410633 31410670 -54285084 - tRNA-Gln-CAA tRNA tRNA -37 38 2 187 240 164 48 chr15 31410982 31411086 -54284668 - MIR3 SINE MIR -29 179 64 1226 155 0 0 chr15 31412041 31412228 -54283526 + AluSg/x SINE Alu 81 267 -45 22 56 0 0 chr15 31412918 31412954 -54282800 + AT_rich Low_complexity Low_complexity 1 36 0 19277 166 18 6 chr15 31414182 31415680 -54280074 + L1PA12 LINE L1 1690 3170 -2998 189 0 0 0 chr15 31415680 31415701 -54280053 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 19277 166 18 6 chr15 31415701 31418491 -54277263 + L1PA12 LINE L1 3170 6023 -145 2021 114 0 0 chr15 31419001 31419265 -54276489 + AluSx SINE Alu 4 267 -45 258 366 9 9 chr15 31419367 31419479 -54276275 - MIR SINE MIR -65 143 32 747 320 87 41 chr15 31419830 31420339 -54275415 - L2 LINE L2 0 3313 2778 6739 132 19 16 chr15 31420939 31422131 -54273623 + L1MA2 LINE L1 4746 5949 -355 1802 161 7 11 chr15 31422131 31422455 -54273299 + AluJb SINE Alu 1 323 0 6739 132 19 16 chr15 31422455 31422812 -54272942 + L1MA2 LINE L1 5949 6304 0 481 254 11 79 chr15 31423300 31423489 -54272265 - MER5B DNA MER1_type -1 177 2 225 0 0 0 chr15 31423502 31423527 -54272227 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr15 31424231 31424259 -54271495 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr15 31425156 31425176 -54270578 + (CAA)n Simple_repeat Simple_repeat 2 21 0 494 305 63 27 chr15 31425292 31425515 -54270239 + MIR SINE MIR 10 240 -22 331 297 21 76 chr15 31425670 31425815 -54269939 - MIR SINE MIR -115 147 11 1614 271 62 75 chr15 31425851 31426801 -54268953 - L2 LINE L2 0 3313 2371 405 303 52 32 chr15 31427062 31427217 -54268537 - MIR3 SINE MIR -6 202 45 444 207 0 0 chr15 31428409 31428496 -54267258 - MIR3 SINE MIR -45 163 77 297 118 0 0 chr15 31428743 31428794 -54266960 + (TATG)n Simple_repeat Simple_repeat 2 52 0 217 191 0 0 chr15 31428825 31428872 -54266882 + L2 LINE L2 3267 3313 0 404 243 104 58 chr15 31430478 31430737 -54265017 + L2 LINE L2 3041 3311 -2 230 260 0 13 chr15 31430855 31430932 -54264822 + (TA)n Simple_repeat Simple_repeat 1 76 0 28 0 0 0 chr15 31431228 31431256 -54264498 + AT_rich Low_complexity Low_complexity 1 28 0 465 236 68 94 chr15 31431408 31431717 -54264037 + L1ME3A LINE L1 5851 6151 -19 264 232 0 0 chr15 31432119 31432188 -54263566 - L1M4 LINE L1 -2900 3246 3178 306 332 107 21 chr15 31432225 31432412 -54263342 - HAL1 LINE L1 -924 1583 1381 655 317 116 49 chr15 31432560 31432928 -54262826 - L1MEd LINE L1 -5042 1077 735 267 31 0 0 chr15 31432928 31432960 -54262794 + (TG)n Simple_repeat Simple_repeat 1 32 0 655 317 116 49 chr15 31432960 31433505 -54262249 - L1MEd LINE L1 -5384 735 103 677 293 40 7 chr15 31433628 31433925 -54261829 + L1ME LINE L1 5485 5791 -330 28 0 0 0 chr15 31433983 31434011 -54261743 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr15 31434038 31434073 -54261681 + AT_rich Low_complexity Low_complexity 1 35 0 4833 135 34 23 chr15 31434141 31435459 -54260295 + L1PB1 LINE L1 4821 6147 -4 6022 99 8 9 chr15 31435470 31436440 -54259314 + L1PA10 LINE L1 5175 6143 -25 255 31 0 0 chr15 31436440 31436472 -54259282 + (CTAAA)n Simple_repeat Simple_repeat 4 35 0 4679 119 54 84 chr15 31436800 31437766 -54257988 - L1PA16 LINE L1 -4 6162 5224 5943 75 5 3 chr15 31439747 31440525 -54255229 - LTR17 LTR ERV1 0 780 1 206 307 102 11 chr15 31440740 31440828 -54254926 - MIR SINE MIR -131 131 36 31 0 0 0 chr15 31440868 31440899 -54254855 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr15 31441534 31441577 -54254177 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr15 31442476 31442506 -54253248 + AT_rich Low_complexity Low_complexity 1 30 0 369 58 0 0 chr15 31442849 31442901 -54252853 + (GA)n Simple_repeat Simple_repeat 1 52 0 25 0 0 0 chr15 31443210 31443235 -54252519 + AT_rich Low_complexity Low_complexity 1 25 0 777 257 35 63 chr15 31443303 31443618 -54252136 + L1M4 LINE L1 101 406 -6136 308 169 0 0 chr15 31443613 31443672 -54252082 + L1M4 LINE L1 3333 3391 -3253 * 3703 244 15 14 chr15 31443674 31444710 -54251044 + L1M4 LINE L1 3781 4817 -1827 2254 134 69 27 chr15 31444711 31445115 -54250639 + MSTA LTR MaLR 1 421 -7 8864 181 17 10 chr15 31445118 31446758 -54248996 + MSTA-int LTR MaLR 1 1651 0 1950 160 70 13 chr15 31446758 31447146 -54248608 + MSTA LTR MaLR 1 410 -18 754 259 45 28 chr15 31447820 31448067 -54247687 + L1MDa LINE L1 62 312 -6228 1347 145 47 0 chr15 31448067 31448281 -54247473 + MER30 DNA MER1_type 1 224 -6 449 294 38 68 chr15 31448501 31448736 -54247018 + L1MDa LINE L1 306 533 -6007 1161 232 36 17 chr15 31449443 31449745 -54246009 + L1PA16 LINE L1 5858 6165 -1 855 131 0 0 chr15 31450285 31450415 -54245339 + L1PA16 LINE L1 6036 6165 -1 26 0 0 0 chr15 31450995 31451021 -54244733 + AT_rich Low_complexity Low_complexity 1 26 0 306 299 72 54 chr15 31451178 31451399 -54244355 - MIR SINE MIR -17 245 21 1245 206 112 9 chr15 31451413 31451753 -54244001 - L1MB8 LINE L1 0 6178 5804 186 43 0 0 chr15 31453132 31453155 -54242599 + (T)n Simple_repeat Simple_repeat 1 23 0 1878 106 23 0 chr15 31453276 31453532 -54242222 + AluSq SINE Alu 1 262 -51 256 337 31 41 chr15 31453782 31453880 -54241874 - L2 LINE L2 -27 3245 3149 674 130 165 0 chr15 31453905 31454020 -54241734 + AluJo SINE Alu 3 136 -176 281 209 0 22 chr15 31454033 31454124 -54241630 + (TTTA)n Simple_repeat Simple_repeat 4 92 0 34 0 0 0 chr15 31454128 31454162 -54241592 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr15 31455277 31455298 -54240456 + AT_rich Low_complexity Low_complexity 1 21 0 474 305 120 78 chr15 31455338 31456528 -54239226 - L1 LINE L1 -773 5373 4134 277 289 19 0 chr15 31456872 31456976 -54238778 + L1MC4a LINE L1 5824 5929 -1879 246 265 34 86 chr15 31457732 31457849 -54237905 + L3b LINE CR1 1198 1308 -275 180 111 0 0 chr15 31457855 31457882 -54237872 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 207 139 0 0 chr15 31458274 31458310 -54237444 + (TG)n Simple_repeat Simple_repeat 2 37 0 182 213 43 0 chr15 31458349 31458396 -54237358 - L3 LINE CR1 -1163 414 366 630 233 8 0 chr15 31460440 31460573 -54235181 + MER94 DNA DNA 1 134 0 498 242 37 37 chr15 31462189 31462350 -54233404 + MLT1I LTR MaLR 241 401 -8 234 283 17 17 chr15 31462467 31462527 -54233227 - MIR SINE MIR -133 75 16 937 249 4 9 chr15 31463677 31463902 -54231852 + MER58A DNA MER1_type 1 224 0 4546 158 39 18 chr15 31464120 31464997 -54230757 + L1MB1 LINE L1 5273 6167 -1 184 327 0 0 chr15 31465174 31465226 -54230528 + L2 LINE L2 2987 3038 -234 197 0 0 67 chr15 31465339 31465369 -54230385 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 714 338 94 25 chr15 31465388 31466059 -54229695 + L2 LINE L2 2599 3312 -1 2037 117 4 4 chr15 31466197 31466505 -54229249 - AluSx SINE Alu 0 310 3 461 83 0 0 chr15 31466531 31466591 -54229163 + U2 snRNA snRNA 1 60 -128 290 309 29 86 chr15 31467770 31467909 -54227845 - L2 LINE L2 -5 3267 3137 23 0 0 0 chr15 31468436 31468459 -54227295 + AT_rich Low_complexity Low_complexity 1 23 0 2259 119 0 0 chr15 31469503 31469815 -54225939 + AluSx SINE Alu 1 312 0 2153 102 28 0 chr15 31470262 31470545 -54225209 - AluSg SINE Alu -19 291 1 2343 103 0 0 chr15 31471537 31471848 -54223906 + AluY SINE Alu 1 311 0 31 68 0 0 chr15 31474567 31474626 -54221128 + AT_rich Low_complexity Low_complexity 1 59 0 32 86 0 0 chr15 31474743 31474824 -54220930 + AT_rich Low_complexity Low_complexity 1 81 0 746 246 37 21 chr15 31475542 31475733 -54220021 + MER58A DNA MER1_type 7 200 -24 1878 179 99 8 chr15 31475744 31476129 -54219625 - MSTB1 LTR MaLR -12 420 1 693 187 26 0 chr15 31476171 31476326 -54219428 - MER3 DNA MER1_type 0 2624 2466 383 244 0 0 chr15 31476321 31476399 -54219355 - MER3 DNA MER1_type -92 117 40 * 208 370 29 59 chr15 31476653 31476926 -54218828 - L3b LINE CR1 -205 1378 1114 1039 247 4 20 chr15 31477338 31477589 -54218165 + AluJo SINE Alu 4 250 -62 243 0 0 0 chr15 31477644 31477671 -54218083 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 203 233 0 0 chr15 31477820 31477863 -54217891 + L3 LINE CR1 995 1037 -540 243 317 97 9 chr15 31479205 31479432 -54216322 + L1ME LINE L1 5616 5862 -259 1910 152 0 7 chr15 31481622 31481919 -54213835 + AluJb SINE Alu 1 295 -17 225 268 24 114 chr15 31482487 31482610 -54213144 - L2 LINE L2 -1 3271 3160 1042 204 136 11 chr15 31483093 31483460 -54212294 + L1MC3 LINE L1 6986 7398 -387 * 1289 164 4 28 chr15 31483447 31483716 -54212038 + L1MC1 LINE L1 5672 5824 -332 418 324 0 0 chr15 31484589 31484762 -54210992 + T-rich Low_complexity Low_complexity 1 173 0 757 233 0 12 chr15 31484866 31485029 -54210725 + LTR41 LTR ERVL 1 161 -612 1712 158 4 11 chr15 31485063 31485342 -54210412 + AluJb SINE Alu 23 299 -13 722 129 41 0 chr15 31485345 31485492 -54210262 + GA-rich Low_complexity Low_complexity 4 156 0 950 262 82 77 chr15 31485587 31486015 -54209739 + LTR41 LTR ERVL 337 766 -7 33 66 0 0 chr15 31486563 31486624 -54209130 + AT_rich Low_complexity Low_complexity 1 61 0 1031 210 39 9 chr15 31486974 31487203 -54208551 + MIR SINE MIR 6 241 -21 378 245 170 13 chr15 31487706 31487865 -54207889 + L2 LINE L2 2990 3173 -140 312 240 25 0 chr15 31488311 31488432 -54207322 + GA-rich Low_complexity Low_complexity 2 125 0 193 276 13 40 chr15 31488653 31488729 -54207025 - L2 LINE L2 -1039 2275 2202 1632 160 40 14 chr15 31489270 31489571 -54206183 + AluJb SINE Alu 1 308 0 2289 91 0 3 chr15 31490125 31490422 -54205332 + AluSq SINE Alu 1 296 -17 2031 85 4 4 chr15 31491515 31491774 -54203980 + AluSc SINE Alu 36 294 -15 24 0 0 0 chr15 31492008 31492032 -54203722 + AT_rich Low_complexity Low_complexity 1 24 0 2041 212 85 30 chr15 31492717 31493246 -54202508 + MLT1E2 LTR MaLR 69 626 0 2317 78 7 0 chr15 31493340 31493633 -54202121 - AluY SINE Alu -16 295 1 2095 114 99 6 chr15 31493856 31494189 -54201565 + THE1B LTR MaLR 1 364 0 224 213 0 0 chr15 31494221 31494268 -54201486 + (CAT)n Simple_repeat Simple_repeat 3 49 0 3084 158 6 9 chr15 31495209 31495739 -54200015 + L1MB3 LINE L1 5634 6161 -22 712 256 87 40 chr15 31496194 31496515 -54199239 - MER46C DNA MER2_type -1 337 2 1307 143 390 3 chr15 31498961 31499269 -54196485 - THE1C-int LTR MaLR -1150 430 4 1617 189 48 38 chr15 31499272 31499643 -54196111 - THE1C LTR MaLR 0 375 1 1283 171 27 0 chr15 31499643 31499900 -54195854 + L1MA4A LINE L1 6035 6298 -5 418 242 59 20 chr15 31500322 31500475 -54195279 - Charlie4 DNA MER1_type 0 1961 1803 42185 38 21 1 chr15 31500614 31506644 -54189110 + L1PA3 LINE L1 4 6155 0 3478 187 29 43 chr15 31506689 31507485 -54188269 - L1MB5 LINE L1 -3 6171 5387 1735 182 0 4 chr15 31507485 31507765 -54187989 - AluJb SINE Alu -33 279 1 620 264 25 0 chr15 31507780 31507977 -54187777 - L1MB5 LINE L1 -830 5316 5115 441 95 0 0 chr15 31508012 31508075 -54187679 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 209 362 78 21 chr15 31508094 31508235 -54187519 - MIR SINE MIR -51 211 63 518 321 0 0 chr15 31508329 31508463 -54187291 - L2 LINE L2 0 3313 3180 224 350 29 19 chr15 31508890 31508993 -54186761 - MIR SINE MIR -149 113 10 16013 48 0 7 chr15 31510643 31513137 -54182617 - L1PA3 LINE L1 -215 5940 3475 258 239 79 14 chr15 31514169 31514305 -54181449 + MIR3 SINE MIR 14 154 -63 1087 207 9 14 chr15 31514410 31514632 -54181122 + MER58A DNA MER1_type 1 221 -3 229 274 94 43 chr15 31516800 31516917 -54178837 + LTR33 LTR ERVL 37 159 -362 832 205 13 64 chr15 31517017 31517251 -54178503 + LTR33 LTR ERVL 296 517 -4 1503 50 0 6 chr15 31517351 31517532 -54178222 - AluY SINE Alu -19 292 113 537 259 135 10 chr15 31517970 31518163 -54177591 - MIR SINE MIR 0 262 46 313 272 88 32 chr15 31518269 31518394 -54177360 + MIR SINE MIR 61 192 -70 1402 185 29 22 chr15 31521061 31521337 -54174417 + AluJo SINE Alu 2 279 -33 303 28 0 0 chr15 31521359 31521395 -54174359 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr15 31522672 31522693 -54173061 + AT_rich Low_complexity Low_complexity 1 21 0 956 298 109 65 chr15 31522726 31523944 -54171810 - L1M4 LINE L1 -766 5380 4109 277 289 19 0 chr15 31524267 31524371 -54171383 + L1MC4a LINE L1 5824 5929 -1879 246 265 34 86 chr15 31525127 31525244 -54170510 + L3b LINE CR1 1198 1308 -275 180 111 0 0 chr15 31525250 31525277 -54170477 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 182 213 43 0 chr15 31525730 31525777 -54169977 - L3 LINE CR1 -1163 414 366 630 233 8 0 chr15 31527823 31527956 -54167798 + MER94 DNA DNA 1 134 0 496 242 37 37 chr15 31529572 31529733 -54166021 + MLT1I LTR MaLR 241 401 -8 207 279 16 33 chr15 31529850 31529911 -54165843 - MIR SINE MIR -133 75 16 1192 15 0 15 chr15 31530838 31530975 -54164779 + AluYa5 SINE Alu 1 135 -176 980 240 4 9 chr15 31531198 31531423 -54164331 + MER58A DNA MER1_type 1 224 0 4516 160 39 18 chr15 31531641 31532518 -54163236 + L1MB1 LINE L1 5273 6167 -1 197 0 0 67 chr15 31532861 31532891 -54162863 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 207 0 0 0 chr15 31532971 31532994 -54162760 + (T)n Simple_repeat Simple_repeat 1 23 0 713 333 101 19 chr15 31532994 31533588 -54162166 + L2 LINE L2 2671 3312 -1 2037 117 4 4 chr15 31533726 31534034 -54161720 - AluSx SINE Alu 0 310 3 461 83 0 0 chr15 31534060 31534120 -54161634 + U2 snRNA snRNA 1 60 -128 290 309 29 86 chr15 31535299 31535438 -54160316 - L2 LINE L2 -5 3267 3137 23 0 0 0 chr15 31535965 31535988 -54159766 + AT_rich Low_complexity Low_complexity 1 23 0 2186 128 0 0 chr15 31537032 31537338 -54158416 + AluSx SINE Alu 1 306 -6 2133 109 28 0 chr15 31537786 31538071 -54157683 - AluSx SINE Alu -19 293 1 2212 51 44 4 chr15 31539472 31539746 -54156008 - AluY SINE Alu -15 296 12 227 229 36 60 chr15 31539805 31539888 -54155866 + L2 LINE L2 3229 3309 -4 454 222 40 0 chr15 31539977 31540076 -54155678 + MIR SINE MIR 98 200 -62 332 310 0 20 chr15 31540220 31540320 -54155434 + L2 LINE L2 3182 3279 -34 224 204 140 65 chr15 31540794 31540887 -54154867 - MIR3 SINE MIR -3 205 106 2072 118 10 7 chr15 31540893 31541189 -54154565 - AluSx SINE Alu -15 297 1 217 277 0 0 chr15 31541189 31541236 -54154518 + L3 LINE CR1 1524 1570 -7 2532 50 3 0 chr15 31542856 31543156 -54152598 + AluY SINE Alu 1 301 -10 309 282 24 0 chr15 31543811 31543896 -54151858 + L2 LINE L2 3180 3266 -6 295 341 68 0 chr15 31544288 31544420 -54151334 + MIR SINE MIR 110 250 -12 625 117 51 44 chr15 31544678 31544815 -54150939 + MER53 DNA DNA 1 138 -51 301 143 86 0 chr15 31544809 31544879 -54150875 + MER53 DNA DNA 98 173 -16 * 377 303 28 7 chr15 31544919 31545064 -54150690 - MIR3 SINE MIR -31 177 30 367 258 22 22 chr15 31545666 31545755 -54149999 + MIR SINE MIR 3 91 -171 209 250 0 0 chr15 31546056 31546100 -54149654 - MIR SINE MIR -92 116 73 277 277 53 11 chr15 31547218 31547312 -54148442 - L2 LINE L2 -8 3305 3208 297 266 89 40 chr15 31548050 31548174 -54147580 - L2 LINE L2 -4 3309 3180 13586 125 29 69 chr15 31548305 31550291 -54145463 + Tigger1 DNA MER2_type 24 2020 -398 728 175 24 16 chr15 31550291 31550417 -54145337 + FLAM_A SINE Alu 2 128 -14 13586 125 29 69 chr15 31550417 31550801 -54144953 + Tigger1 DNA MER2_type 2020 2418 0 532 245 172 20 chr15 31550942 31551146 -54144608 + MIR SINE MIR 27 261 -1 2423 176 17 11 chr15 31551396 31551857 -54143897 + MLT1C LTR MaLR 4 467 0 227 291 0 0 chr15 31552924 31552979 -54142775 - L2 LINE L2 -8 3264 3210 258 81 0 0 chr15 31553215 31553252 -54142502 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 28 29 0 0 chr15 31554548 31554583 -54141171 + AT_rich Low_complexity Low_complexity 1 35 0 269 353 68 34 chr15 31554746 31554981 -54140773 - L2 LINE L2 -1 3271 3029 361 266 84 59 chr15 31555207 31555245 -54140509 - L3 LINE CR1 -578 999 963 2092 110 73 17 chr15 31555245 31555600 -54140154 + THE1C LTR MaLR 1 375 0 361 266 84 59 chr15 31555600 31555764 -54139990 - L3 LINE CR1 -614 963 792 400 326 137 17 chr15 31555809 31556042 -54139712 - MIR SINE MIR 0 262 2 2062 124 0 13 chr15 31556502 31556783 -54138971 + AluSx SINE Alu 1 289 -23 190 0 0 0 chr15 31556783 31556804 -54138950 + (CAA)n Simple_repeat Simple_repeat 1 180 0 2062 124 0 13 chr15 31556804 31556828 -54138926 + AluSx SINE Alu 289 312 0 270 0 0 0 chr15 31557139 31557169 -54138585 + (TC)n Simple_repeat Simple_repeat 1 30 0 1596 171 31 27 chr15 31557169 31557462 -54138292 - AluJb SINE Alu -18 294 1 21 0 0 0 chr15 31557537 31557558 -54138196 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr15 31557928 31557959 -54137795 + GC_rich Low_complexity Low_complexity 1 31 0 36 23 0 0 chr15 31558342 31558385 -54137369 + AT_rich Low_complexity Low_complexity 1 43 0 254 29 29 0 chr15 31558866 31558901 -54136853 + (CCCCG)n Simple_repeat Simple_repeat 5 40 0 210 71 0 0 chr15 31558997 31559025 -54136729 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 4902 94 15 17 chr15 31559190 31559944 -54135810 - L1MA3 LINE L1 0 6305 5554 2518 108 0 24 chr15 31559945 31560002 -54135752 + L1M1 LINE L1 5275 5332 -972 1925 180 0 0 chr15 31560002 31560308 -54135446 + AluSx SINE Alu 1 306 -6 2518 108 0 24 chr15 31560308 31560665 -54135089 + L1M1 LINE L1 5332 5679 -625 1579 185 26 13 chr15 31560709 31561012 -54134742 + AluJo SINE Alu 6 312 0 246 222 202 20 chr15 31561536 31561635 -54134119 + L2 LINE L2 3104 3220 -93 212 269 51 26 chr15 31561881 31561959 -54133795 + MIR SINE MIR 45 124 -84 422 221 171 0 chr15 31561961 31562119 -54133635 - ORSL DNA AcHobo 0 275 91 2307 219 11 48 chr15 31562120 31562781 -54132973 + MER92B LTR ERV1 1 636 0 248 217 96 12 chr15 31562784 31562867 -54132887 - ORSL DNA AcHobo -185 90 1 204 232 71 18 chr15 31562867 31562923 -54132831 + MIR3 SINE MIR 119 177 -31 620 171 0 0 chr15 31563379 31563484 -54132270 + U6 snRNA snRNA 1 105 -2 25 31 0 0 chr15 31563554 31563586 -54132168 + AT_rich Low_complexity Low_complexity 1 32 0 265 257 62 9 chr15 31563717 31563830 -54131924 - L1ME4a LINE L1 -219 5902 5784 353 280 67 7 chr15 31563907 31564057 -54131697 - L1ME4a LINE L1 -456 5665 5507 223 254 104 15 chr15 31564099 31564166 -54131588 + L2 LINE L2 3127 3199 -73 1678 237 102 29 chr15 31565498 31566025 -54129729 + MLT1F1 LTR MaLR 2 567 0 553 272 83 58 chr15 31566369 31566682 -54129072 + LTR67 LTR ERVL 237 557 0 233 337 47 23 chr15 31566687 31566773 -54128981 - MIR SINE MIR -117 145 58 607 307 86 54 chr15 31567284 31567691 -54128063 + HAL1 LINE L1 534 953 -1554 4738 161 34 13 chr15 31567727 31568562 -54127192 + L1MA8 LINE L1 5184 6040 -251 4325 110 13 0 chr15 31568562 31569189 -54126565 - MER41B LTR ERV1 0 635 1 4738 161 34 13 chr15 31569189 31569443 -54126311 + L1MA8 LINE L1 6040 6287 -4 1985 242 70 23 chr15 31569455 31569690 -54126064 + L1ME1 LINE L1 4623 4846 -1320 469 16 0 0 chr15 31569690 31569752 -54126002 - L1PA3 LINE L1 0 6155 6094 1985 242 70 23 chr15 31569752 31570740 -54125014 + L1ME1 LINE L1 4846 5908 -258 347 281 9 0 chr15 31570767 31570881 -54124873 + L1ME1 LINE L1 6030 6144 -22 388 35 35 0 chr15 31571442 31571500 -54124254 + (TC)n Simple_repeat Simple_repeat 1 60 0 870 278 104 35 chr15 31571899 31572418 -54123336 + HAL1 LINE L1 1397 1951 -556 2306 96 0 0 chr15 31572590 31572892 -54122862 + AluSx SINE Alu 1 302 -10 219 69 0 0 chr15 31572894 31572923 -54122831 + (TA)n Simple_repeat Simple_repeat 1 29 0 659 280 102 36 chr15 31572963 31573327 -54122427 + LTR67 LTR ERVL 3 390 -167 235 210 16 0 chr15 31573364 31573426 -54122328 + LTR67 LTR ERVL 480 542 -15 241 329 92 24 chr15 31573663 31573827 -54121927 - MIR3 SINE MIR -31 177 3 355 322 41 20 chr15 31575819 31575965 -54119789 + L2 LINE L2 3164 3312 -1 23 33 0 0 chr15 31576104 31576134 -54119620 + AT_rich Low_complexity Low_complexity 1 30 0 202 329 27 0 chr15 31576148 31576221 -54119533 + CT-rich Low_complexity Low_complexity 3 77 0 * 213 250 0 0 chr15 31576182 31576230 -54119524 + T-rich Low_complexity Low_complexity 1 48 0 407 204 12 1 chr15 31576546 31576645 -54119109 + MLT1H1 LTR MaLR 1 103 -465 323 164 0 0 chr15 31576848 31576915 -54118839 + L1MA3 LINE L1 6239 6305 0 226 247 0 27 chr15 31576923 31576996 -54118758 + MLT-int LTR MaLR 22 92 -1643 216 306 56 28 chr15 31577038 31577110 -54118644 + L2 LINE L2 3199 3272 0 1293 134 5 0 chr15 31577189 31577391 -54118363 - THE1B LTR MaLR 0 364 162 7528 129 11 39 chr15 31577391 31578696 -54117058 - THE1B-int LTR MaLR -312 1268 1 2589 89 3 16 chr15 31578696 31578766 -54116988 - THE1B LTR MaLR 0 364 295 2351 130 5 19 chr15 31578766 31579135 -54116619 + THE1B LTR MaLR 1 364 0 2589 89 3 16 chr15 31579135 31579433 -54116321 - THE1B LTR MaLR -69 295 1 1610 112 23 8 chr15 31579433 31579691 -54116063 - THE1C LTR MaLR -113 262 1 9318 129 37 38 chr15 31579691 31581271 -54114483 - THE1C-int LTR MaLR 0 1580 3 2780 93 3 5 chr15 31581273 31581649 -54114105 - THE1C LTR MaLR 0 375 1 359 336 35 13 chr15 31581812 31582041 -54113713 + L1ME LINE L1 5482 5715 -406 1674 181 25 3 chr15 31582079 31582405 -54113349 - L1PA16 LINE L1 -24 6142 5810 21 0 0 0 chr15 31582418 31582439 -54113315 + AT_rich Low_complexity Low_complexity 1 21 0 342 336 83 31 chr15 31582796 31582937 -54112817 - L2 LINE L2 -469 2845 2713 2271 133 14 8 chr15 31582937 31583299 -54112455 - THE1B LTR MaLR 0 364 1 9984 119 47 3 chr15 31583299 31584812 -54110942 - THE1B-int LTR MaLR 0 1580 1 2676 113 3 0 chr15 31584812 31585175 -54110579 - THE1B LTR MaLR 0 364 1 342 336 83 31 chr15 31585175 31585260 -54110494 - L2 LINE L2 -600 2714 2605 463 314 41 35 chr15 31585495 31585691 -54110063 - MIR SINE MIR -58 150 6 748 301 35 13 chr15 31585821 31586050 -54109704 + MIR SINE MIR 5 238 -24 342 199 22 88 chr15 31586059 31586161 -54109593 - MIR SINE MIR -63 145 61 189 0 0 0 chr15 31586313 31586334 -54109420 + (TAA)n Simple_repeat Simple_repeat 3 23 0 183 250 191 15 chr15 31586993 31587061 -54108693 - L2 LINE L2 -2 3311 3232 191 341 65 72 chr15 31588350 31588643 -54107111 - L2 LINE L2 -6 3266 2976 751 62 0 54 chr15 31588649 31588761 -54106993 + AluY SINE Alu 206 311 0 637 254 142 37 chr15 31590014 31590493 -54105261 - MLT1F1 LTR MaLR -9 533 11 181 269 0 97 chr15 31590554 31590647 -54105107 - L2 LINE L2 -1876 1438 1355 419 262 171 37 chr15 31590716 31590790 -54104964 + MER5A DNA MER1_type 4 67 -122 4535 70 10 3 chr15 31590790 31591373 -54104381 - LTR14C LTR ERVK 0 587 1 419 262 171 37 chr15 31591373 31591462 -54104292 + MER5A DNA MER1_type 67 189 0 1358 175 3 95 chr15 31591727 31592042 -54103712 + AluJo SINE Alu 1 286 -26 1012 262 17 60 chr15 31592449 31592968 -54102786 + L1MC5 LINE L1 6737 7233 -728 279 264 115 16 chr15 31593058 31593240 -54102514 + L1MC5 LINE L1 7235 7434 -527 2006 156 3 10 chr15 31593266 31593580 -54102174 - AluJb SINE Alu 0 312 1 1612 261 33 65 chr15 31593678 31594371 -54101383 + L1MCb LINE L1 3 673 -5372 3176 273 32 27 chr15 31594419 31596502 -54099252 + L1MCb LINE L1 1710 3761 -2803 510 171 111 0 chr15 31596521 31596600 -54099154 + L1MA9 LINE L1 18 115 -7450 248 0 31 0 chr15 31596600 31596632 -54099122 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 510 171 111 0 chr15 31596632 31596669 -54099085 + L1MA9 LINE L1 115 147 -7418 1475 227 26 26 chr15 31596673 31597060 -54098694 + L1MA9 LINE L1 364 750 -6815 4988 184 18 1 chr15 31597064 31598126 -54097628 + L1MA9 LINE L1 4227 5306 -2259 482 127 0 0 chr15 31598240 31598319 -54097435 - L1MA1 LINE L1 -105 6197 6119 2431 137 2 14 chr15 31598330 31598760 -54096994 + L1MCb LINE L1 4313 4737 -1827 1707 78 30 7 chr15 31598759 31599028 -54096726 + L1MA1 LINE L1 5923 6197 -105 * 2251 245 46 39 chr15 31599026 31599932 -54095822 + L1M4 LINE L1 3328 4240 -1906 4937 141 22 13 chr15 31600047 31600969 -54094785 + L1MA9 LINE L1 6801 7730 -1 332 250 76 62 chr15 31601091 31601235 -54094519 + MLT1D LTR MaLR 265 410 -95 68 91 0 0 chr15 31601345 31601477 -54094277 + AT_rich Low_complexity Low_complexity 1 132 0 37 127 0 0 chr15 31601521 31601671 -54094083 + AT_rich Low_complexity Low_complexity 1 150 0 4101 31 90 4 chr15 31602446 31602958 -54092796 + LTR6B LTR ERV1 3 558 0 461 331 74 35 chr15 31603117 31603455 -54092299 + L2 LINE L2 2550 2900 -414 2043 100 18 4 chr15 31604040 31604320 -54091434 - AluSq SINE Alu -29 284 1 1030 151 73 19 chr15 31604342 31604548 -54091206 - L1PA16 LINE L1 -10 6156 5940 854 157 0 8 chr15 31605113 31605247 -54090507 + AluSg/x SINE Alu 136 268 -44 228 119 95 0 chr15 31605249 31605291 -54090463 + Alu SINE Alu 241 286 -16 863 164 0 8 chr15 31605431 31605565 -54090189 + FLAM_C SINE Alu 1 133 0 2018 157 3 3 chr15 31605614 31605926 -54089828 - AluSx SINE Alu 0 312 1 1856 159 14 3 chr15 31605936 31606232 -54089522 - AluJo SINE Alu -13 299 1 252 0 0 0 chr15 31606280 31606308 -54089446 + (CTTG)n Simple_repeat Simple_repeat 1 28 0 3832 173 59 31 chr15 31606403 31607307 -54088447 - L1MA10 LINE L1 -38 6296 5368 1347 179 143 48 chr15 31607304 31607689 -54088065 + L1 LINE L1 4878 5312 -834 * 246 32 0 0 chr15 31607689 31607720 -54088034 + (CAA)n Simple_repeat Simple_repeat 1 31 0 1347 179 143 48 chr15 31607720 31607774 -54087980 + L1 LINE L1 5312 5359 -787 1110 146 0 0 chr15 31608302 31608473 -54087281 - AluSg/x SINE Alu -4 308 138 263 146 73 0 chr15 31608476 31608531 -54087223 + Charlie1 DNA MER1_type 2702 2760 -1 507 120 0 0 chr15 31609496 31609571 -54086183 - AluS SINE Alu -236 76 2 2932 202 59 10 chr15 31609958 31610635 -54085119 - MER67C LTR ERV1 0 710 1 4277 157 42 57 chr15 31610992 31611905 -54083849 - MER4D LTR ERV1 0 903 5 1652 304 57 48 chr15 31612082 31612876 -54082878 + L2 LINE L2 1994 2794 -520 29 0 0 0 chr15 31612958 31612987 -54082767 + AT_rich Low_complexity Low_complexity 1 29 0 438 216 39 52 chr15 31613015 31613168 -54082586 - Charlie2 DNA MER1_type -570 2292 2142 1026 239 123 28 chr15 31613199 31613597 -54082157 - Charlie2b DNA MER1_type -1196 1586 1151 3153 107 29 68 chr15 31613602 31614218 -54081536 + MER4B LTR ERV1 1 755 -24 2032 140 59 8 chr15 31614218 31614575 -54081179 - THE1C LTR MaLR 0 375 1 3153 107 29 68 chr15 31614575 31614596 -54081158 + MER4B LTR ERV1 755 775 -4 722 257 53 50 chr15 31614619 31614942 -54080812 - Charlie2b DNA MER1_type -1643 1139 816 1976 119 3 22 chr15 31615014 31615366 -54080388 - MER4A LTR ERV1 0 664 261 610 124 0 10 chr15 31615366 31615463 -54080291 - MER4A LTR ERV1 -566 98 3 15759 103 61 14 chr15 31615471 31618109 -54077645 - MER4A-int LTR ERV1 -2 6596 3837 421 217 36 32 chr15 31618282 31618414 -54077340 + MIR SINE MIR 71 205 -57 1775 131 3 62 chr15 31619094 31619385 -54076369 - AluSp SINE Alu -39 274 1 5051 179 38 44 chr15 31619386 31620504 -54075250 + L1MC3 LINE L1 5790 6900 -885 1057 235 103 62 chr15 31620504 31620666 -54075088 + MLT1D LTR MaLR 1 155 -350 2091 134 3 0 chr15 31620666 31620973 -54074781 - AluSx SINE Alu -4 308 1 1057 235 103 62 chr15 31620973 31621295 -54074459 + MLT1D LTR MaLR 155 505 0 1285 126 198 159 chr15 31621295 31621495 -54074259 + L1MC3 LINE L1 6896 7087 -698 259 263 26 13 chr15 31621495 31621571 -54074183 + MLT1F1 LTR MaLR 35 111 -456 1285 126 198 159 chr15 31621571 31621779 -54073975 + L1MC3 LINE L1 7087 7398 -387 * 1289 164 4 28 chr15 31621766 31622035 -54073719 + L1MC1 LINE L1 5672 5824 -332 7609 32 0 0 chr15 31622739 31624088 -54071666 + L1PA3 LINE L1 4806 6154 -1 25 0 0 0 chr15 31624089 31624114 -54071640 + AT_rich Low_complexity Low_complexity 1 25 0 591 146 27 27 chr15 31624132 31624242 -54071512 + L1MC3 LINE L1 7393 7502 -283 393 342 115 33 chr15 31624439 31624769 -54070985 - L1ME LINE L1 -5520 550 194 281 303 15 0 chr15 31624819 31624885 -54070869 - MIR SINE MIR -184 78 12 376 340 7 43 chr15 31625069 31625210 -54070544 + MIR3 SINE MIR 20 155 -53 266 274 0 27 chr15 31625515 31625588 -54070166 + LTR67 LTR ERVL 95 165 -392 271 330 120 31 chr15 31626215 31626406 -54069348 + L2 LINE L2 2293 2500 -814 461 293 33 33 chr15 31626705 31626886 -54068868 + MIR SINE MIR 58 238 -24 277 239 18 62 chr15 31627369 31627482 -54068272 + L1MC/D LINE L1 5650 5757 -2051 2114 76 3 40 chr15 31627776 31628077 -54067677 - AluY SINE Alu 0 311 22 22 0 0 0 chr15 31628080 31628102 -54067652 + AT_rich Low_complexity Low_complexity 1 22 0 2006 130 3 3 chr15 31628740 31629032 -54066722 - AluSx SINE Alu -20 292 1 564 300 108 9 chr15 31629564 31629596 -54066158 - MIR SINE MIR 0 262 235 186 43 0 0 chr15 31629596 31629619 -54066135 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 423 0 0 0 chr15 31629618 31629665 -54066089 + (TA)n Simple_repeat Simple_repeat 1 47 0 564 300 108 9 chr15 31629619 31629855 -54065899 - MIR SINE MIR -27 235 18 326 259 45 36 chr15 31630516 31630628 -54065126 - MIR SINE MIR -72 190 78 2514 51 0 0 chr15 31630710 31631002 -54064752 - AluY SINE Alu -19 292 1 691 266 27 76 chr15 31631469 31631732 -54064022 + MIR SINE MIR 3 252 -10 237 65 0 0 chr15 31631935 31631966 -54063788 + (CAT)n Simple_repeat Simple_repeat 3 33 0 423 237 88 0 chr15 31633641 31633755 -54061999 + L1MC4 LINE L1 7914 8037 -5 1986 114 4 0 chr15 31635570 31635842 -54059912 + AluSg SINE Alu 1 273 -37 630 26 0 0 chr15 31636335 31636411 -54059343 + (TTTTA)n Simple_repeat Simple_repeat 2 77 0 2093 100 0 24 chr15 31636415 31636706 -54059048 - AluSx SINE Alu -28 284 1 207 0 0 0 chr15 31637130 31637153 -54058601 + (TG)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr15 31637312 31637333 -54058421 + AT_rich Low_complexity Low_complexity 1 21 0 189 427 0 0 chr15 31638386 31638482 -54057272 + MIR3 SINE MIR 108 203 -5 664 209 65 39 chr15 31638626 31638779 -54056975 + FRAM SINE Alu 2 158 -18 21 36 0 0 chr15 31640148 31640176 -54055578 + AT_rich Low_complexity Low_complexity 1 28 0 1046 177 22 80 chr15 31640503 31640729 -54055025 + MER20 DNA MER1_type 2 214 -5 257 333 133 17 chr15 31641055 31641175 -54054579 - MER5B DNA MER1_type -4 174 41 321 293 70 83 chr15 31641210 31641367 -54054387 - MER5B DNA MER1_type 0 178 24 61 88 0 0 chr15 31641670 31641829 -54053925 + AT_rich Low_complexity Low_complexity 1 159 0 306 376 59 27 chr15 31641988 31642174 -54053580 - HAL1 LINE L1 -2315 192 1 219 328 166 15 chr15 31642181 31642513 -54053241 + L2 LINE L2 1993 2374 -940 738 294 0 0 chr15 31642612 31642792 -54052962 + MER5A DNA MER1_type 9 188 -1 25 51 0 0 chr15 31642906 31642945 -54052809 + AT_rich Low_complexity Low_complexity 1 39 0 23 78 0 0 chr15 31643049 31643100 -54052654 + AT_rich Low_complexity Low_complexity 1 51 0 461 290 83 44 chr15 31643391 31643798 -54051956 - L1MEc LINE L1 -4641 1755 1333 309 0 98 0 chr15 31644961 31645012 -54050742 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1943 112 0 4 chr15 31645017 31645284 -54050470 - AluSx SINE Alu -46 266 1 180 356 100 0 chr15 31645596 31645686 -54050068 + MIR3 SINE MIR 97 195 -13 3608 143 35 20 chr15 31646284 31646537 -54049217 + L1MA9 LINE L1 5536 5784 -528 1708 145 31 72 chr15 31646537 31646896 -54048858 + MER2 DNA MER2_type 1 344 0 3608 143 35 20 chr15 31646896 31647306 -54048448 + L1MA9 LINE L1 5784 6209 -103 316 137 20 0 chr15 31647306 31647357 -54048397 - MSTA LTR MaLR 0 428 377 1566 124 159 19 chr15 31647517 31647832 -54047922 - MSTA LTR MaLR -69 359 1 465 172 10 0 chr15 31647833 31647932 -54047822 + L1MA9 LINE L1 6206 6305 -7 4696 162 17 4 chr15 31648094 31648970 -54046784 + L1MC1 LINE L1 5185 6072 -261 1343 161 9 0 chr15 31648970 31649181 -54046573 + AluSg/x SINE Alu 84 296 -16 416 118 3 20 chr15 31649181 31649262 -54046492 + L1MC1 LINE L1 6068 6126 -207 321 154 0 0 chr15 31649275 31649327 -54046427 + L1MC4 LINE L1 6652 6703 -1339 229 95 0 0 chr15 31649343 31649385 -54046369 - LTR66 LTR ERVL -171 439 398 593 136 13 129 chr15 31649385 31649540 -54046214 + L1MC1 LINE L1 6195 6331 -2 1688 209 0 7 chr15 31649649 31649946 -54045808 + AluJb SINE Alu 1 295 -17 1098 113 0 0 chr15 31650131 31650272 -54045482 + AluSq/x SINE Alu 10 150 -162 456 114 0 25 chr15 31650272 31650351 -54045403 + Alu SINE Alu 233 309 -1 2271 125 11 19 chr15 31651145 31651512 -54044242 - THE1B LTR MaLR 0 364 1 444 275 7 0 chr15 31651558 31651679 -54044075 - MIR SINE MIR -53 155 31 227 339 29 98 chr15 31652118 31652528 -54043226 + L2 LINE L2 2365 2746 -568 2233 175 14 34 chr15 31652817 31653435 -54042319 + L1MB3 LINE L1 5393 5966 -217 225 279 16 16 chr15 31653455 31653516 -54042238 + L2 LINE L2 3126 3186 -86 729 260 59 0 chr15 31654492 31654696 -54041058 - MER20 DNA MER1_type -2 217 2 183 381 14 54 chr15 31654815 31654962 -54040792 + L2 LINE L2 3132 3272 0 26 0 0 0 chr15 31656787 31656813 -54038941 + AT_rich Low_complexity Low_complexity 1 26 0 229 355 159 0 chr15 31657646 31657784 -54037970 + L1MEd LINE L1 126 285 -5834 33 0 0 0 chr15 31657906 31657939 -54037815 + AT_rich Low_complexity Low_complexity 1 33 0 28 29 0 0 chr15 31657978 31658013 -54037741 + AT_rich Low_complexity Low_complexity 1 35 0 1786 151 11 0 chr15 31658110 31658381 -54037373 + AluSx SINE Alu 1 274 -38 317 202 170 0 chr15 31658388 31658482 -54037272 + L1M4 LINE L1 5477 5586 -598 * 571 195 14 87 chr15 31658477 31658709 -54037045 + L1MA10 LINE L1 5952 6329 -5 710 243 82 127 chr15 31658726 31659278 -54036476 + L1MEd LINE L1 622 1148 -4971 1408 245 90 26 chr15 31659935 31660098 -54035656 + L1MC4a LINE L1 6443 6594 -1214 405 0 0 0 chr15 31660098 31660143 -54035611 + (CA)n Simple_repeat Simple_repeat 2 46 0 1408 245 90 26 chr15 31660143 31660444 -54035310 + L1MC4a LINE L1 6594 6937 -871 418 298 92 51 chr15 31660449 31661645 -54034109 + L1MEd LINE L1 2136 3380 -2749 1525 140 7 55 chr15 31661673 31661993 -54033761 - AluSq SINE Alu 0 313 16 2269 43 43 4 chr15 31662704 31662981 -54032773 - AluY SINE Alu -12 299 12 193 276 13 40 chr15 31663531 31663607 -54032147 + L2 LINE L2 2202 2275 -1039 1402 119 78 11 chr15 31663818 31664086 -54031668 - AluY SINE Alu -14 297 12 188 253 36 60 chr15 31664145 31664228 -54031526 + L2 LINE L2 3229 3309 -4 454 222 40 0 chr15 31664317 31664416 -54031338 + MIR SINE MIR 98 200 -62 318 320 0 20 chr15 31664560 31664660 -54031094 + L2 LINE L2 3182 3279 -34 312 240 25 0 chr15 31664933 31665054 -54030700 + CT-rich Low_complexity Low_complexity 2 125 0 294 252 176 19 chr15 31665500 31665659 -54030095 - L2 LINE L2 -140 3173 2990 224 204 140 65 chr15 31666781 31666874 -54028880 - MIR3 SINE MIR -3 205 106 2072 118 10 7 chr15 31666880 31667176 -54028578 - AluSx SINE Alu -15 297 1 217 277 0 0 chr15 31667176 31667223 -54028531 + L3 LINE CR1 1524 1570 -7 548 188 0 21 chr15 31668768 31668864 -54026890 + FRAM SINE Alu 21 114 -62 315 0 0 0 chr15 31668919 31668954 -54026800 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 203 233 0 0 chr15 31669103 31669146 -54026608 + L3 LINE CR1 995 1037 -540 6292 29 0 0 chr15 31669749 31670513 -54025241 - L1HS LINE L1 -2303 3843 3080 * 13285 15 0 0 chr15 31670512 31672833 -54022921 + L1HS LINE L1 3835 6155 0 252 307 111 13 chr15 31673588 31673813 -54021941 + L1ME LINE L1 5616 5862 -259 1926 148 0 7 chr15 31676002 31676299 -54019455 + AluJb SINE Alu 1 295 -17 237 260 24 114 chr15 31676867 31676990 -54018764 - L2 LINE L2 -1 3271 3160 412 344 79 36 chr15 31777559 31777864 -53917890 - L3 LINE CR1 -1 1576 1259 247 272 94 29 chr15 31778215 31778462 -53917292 + L1M3 LINE L1 5180 5446 -737 28 29 0 0 chr15 31778762 31778797 -53916957 + AT_rich Low_complexity Low_complexity 1 35 0 257 305 13 13 chr15 31780344 31780498 -53915256 + (CCCCAG)n Simple_repeat Simple_repeat 1 154 0 527 291 6 6 chr15 31781550 31781708 -53914046 - LTR41 LTR ERVL -615 158 1 301 337 0 0 chr15 31781774 31781872 -53913882 + MIR SINE MIR 59 156 -106 21 0 0 0 chr15 31781875 31781896 -53913858 + AT_rich Low_complexity Low_complexity 1 21 0 2729 198 8 11 chr15 31782298 31782905 -53912849 + L1 LINE L1 4759 5363 -783 4524 182 29 13 chr15 31782991 31783924 -53911830 - L1MA9 LINE L1 -1 6311 5364 258 217 43 14 chr15 31783938 31784007 -53911747 - MIR SINE MIR -72 136 66 1410 212 90 40 chr15 31784345 31784722 -53911032 + MSTD LTR MaLR 1 396 0 1031 190 58 16 chr15 31784953 31785264 -53910490 - MER33 DNA MER1_type 0 324 1 190 323 82 94 chr15 31785377 31785705 -53910049 + L2 LINE L2 2949 3272 0 387 0 0 0 chr15 31785940 31785983 -53909771 + (CA)n Simple_repeat Simple_repeat 2 44 0 187 325 74 61 chr15 31786778 31786916 -53908838 + L2 LINE L2 3019 3154 -159 230 0 0 32 chr15 31786916 31786947 -53908807 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2219 95 0 3 chr15 31786949 31787232 -53908522 - AluSq SINE Alu -31 282 1 187 325 74 61 chr15 31787232 31787321 -53908433 + L2 LINE L2 3154 3252 -61 1720 124 62 8 chr15 31787543 31787802 -53907952 - AluSx SINE Alu -16 296 24 199 154 77 0 chr15 31788835 31788874 -53906880 - L2 LINE L2 -11 3302 3261 230 155 52 35 chr15 31790731 31790789 -53904965 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 613 235 28 62 chr15 31792031 31792210 -53903544 + MER20 DNA MER1_type 1 173 -46 315 258 113 38 chr15 31792568 31792727 -53903027 - L3 LINE CR1 -98 1479 1309 220 291 114 0 chr15 31792994 31793073 -53902681 + L2 LINE L2 3204 3291 -22 245 50 0 25 chr15 31793720 31793760 -53901994 + (TTTTTG)n Simple_repeat Simple_repeat 1 39 0 307 302 40 67 chr15 31794079 31794228 -53901526 - MIR SINE MIR -50 212 68 299 247 27 0 chr15 31794416 31794489 -53901265 + L2 LINE L2 2986 3060 -212 552 56 0 0 chr15 31794650 31794722 -53901032 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 267 320 60 10 chr15 31795192 31795292 -53900462 - L3 LINE CR1 -243 1334 1230 226 306 118 0 chr15 31796730 31796815 -53898939 - MIR SINE MIR -148 114 20 204 40 0 0 chr15 31797304 31797329 -53898425 + (A)n Simple_repeat Simple_repeat 1 25 0 737 280 106 32 chr15 31797527 31797838 -53897916 + MER45C DNA AcHobo 1 376 -577 425 245 7 6 chr15 31797843 31797986 -53897768 + MER45C DNA AcHobo 729 952 -1 264 372 58 25 chr15 31798098 31798375 -53897379 + L2 LINE L2 1715 2000 -1314 28 29 0 0 chr15 31798540 31798575 -53897179 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr15 31798990 31799017 -53896737 + AT_rich Low_complexity Low_complexity 1 27 0 275 54 89 27 chr15 31799089 31799201 -53896553 + (TA)n Simple_repeat Simple_repeat 1 119 0 242 276 28 90 chr15 31799210 31799355 -53896399 - MIR SINE MIR -58 204 69 203 307 23 45 chr15 31799398 31799486 -53896268 - L3 LINE CR1 -87 1490 1405 588 273 8 0 chr15 31800101 31800222 -53895532 + MER63A DNA MER1_type 89 210 0 856 237 116 0 chr15 31800236 31800451 -53895303 + MIR SINE MIR 2 241 -21 21 0 0 0 chr15 31800461 31800482 -53895272 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 31800584 31800605 -53895149 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr15 31800693 31800726 -53895028 + (CA)n Simple_repeat Simple_repeat 2 34 0 351 345 69 63 chr15 31800935 31801132 -53894622 - L3 LINE CR1 -1 1576 1374 2058 106 3 7 chr15 31801132 31801455 -53894299 - AluY SINE Alu 0 322 1 351 345 69 63 chr15 31801455 31801575 -53894179 - L3 LINE CR1 -203 1374 1256 2212 103 7 3 chr15 31802168 31802469 -53893285 - AluSp SINE Alu -11 302 1 604 274 0 25 chr15 31802564 31802721 -53893033 + MLT1E LTR MaLR 9 161 -432 186 43 0 0 chr15 31803060 31803083 -53892671 + (AATTG)n Simple_repeat Simple_repeat 3 25 0 2599 40 0 46 chr15 31804137 31804463 -53891291 - AluY SINE Alu 0 311 1 271 342 17 34 chr15 31805451 31805568 -53890186 - L2 LINE L2 -4 3268 3154 229 301 12 36 chr15 31807062 31807145 -53888609 - MIR SINE MIR -73 189 109 30 0 0 0 chr15 31807258 31807288 -53888466 + AT_rich Low_complexity Low_complexity 1 30 0 2583 197 54 13 chr15 31807514 31808418 -53887336 + L1MB8 LINE L1 4890 5837 -341 1150 224 141 0 chr15 31810125 31810380 -53885374 + AluJo SINE Alu 1 291 -11 561 222 142 23 chr15 31810821 31810997 -53884757 + MIR SINE MIR 29 225 -37 211 369 0 0 chr15 31812974 31813058 -53882696 - MIR SINE MIR -109 153 70 217 259 339 0 chr15 31813240 31813352 -53882402 - L2 LINE L2 0 3313 3164 1678 288 155 32 chr15 31813556 31813804 -53881950 + L2 LINE L2 2123 2339 -974 2032 108 42 3 chr15 31813804 31814092 -53881662 - AluSx SINE Alu -13 299 1 1678 288 155 32 chr15 31814092 31814896 -53880858 + L2 LINE L2 2339 3313 0 1949 93 12 0 chr15 31815064 31815321 -53880433 + AluSc SINE Alu 45 304 -5 377 273 141 15 chr15 31815937 31816135 -53879619 + Charlie2b DNA MER1_type 812 1034 -1748 4597 190 22 16 chr15 31816163 31817633 -53878121 - L1MA9 LINE L1 -39 6337 4852 621 232 77 52 chr15 31817632 31817826 -53877928 - L1MA9 LINE L1 -5938 203 5 * 345 292 22 15 chr15 31817832 31817969 -53877785 + Charlie2b DNA MER1_type 1035 1172 -1610 2636 196 36 24 chr15 31818334 31818791 -53876963 - MER74A LTR ERVL 0 558 91 2495 50 33 0 chr15 31818791 31819090 -53876664 + AluY SINE Alu 1 309 -2 2636 196 36 24 chr15 31819090 31819183 -53876571 - MER74A LTR ERVL -467 91 1 21 36 0 0 chr15 31819982 31820010 -53875744 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr15 31820113 31820148 -53875606 + AT_rich Low_complexity Low_complexity 1 35 0 297 318 139 0 chr15 31820189 31820318 -53875436 + MER5A DNA MER1_type 43 189 0 2517 43 0 10 chr15 31820509 31820812 -53874942 + AluY SINE Alu 3 302 -9 1394 258 129 48 chr15 31821052 31821550 -53874204 + Charlie2b DNA MER1_type 1215 1671 -1191 1653 223 8 16 chr15 31821550 31821918 -53873836 - MLT1A1 LTR MaLR 0 365 1 1394 258 129 48 chr15 31821918 31822373 -53873381 + Charlie2b DNA MER1_type 1671 2245 -537 226 206 44 29 chr15 31822388 31822456 -53873298 - HsTC2 DNA Tc2 0 1898 1830 677 232 26 10 chr15 31822568 31822762 -53872992 + L1MA9 LINE L1 6078 6274 -38 294 244 13 0 chr15 31822794 31822872 -53872882 - HsTC2 DNA Tc2 -1819 79 1 1289 195 83 56 chr15 31822888 31823262 -53872492 + MLT1B LTR MaLR 1 384 -6 519 216 119 31 chr15 31823318 31823637 -53872117 + Charlie2b DNA MER1_type 2288 2634 -148 535 154 22 0 chr15 31823637 31823728 -53872026 + MSTA LTR MaLR 1 93 -335 * 766 215 108 14 chr15 31823721 31823935 -53871819 + MSTA LTR MaLR 194 427 -1 288 283 10 0 chr15 31823935 31824030 -53871724 + Charlie2b DNA MER1_type 2629 2724 -58 346 294 77 74 chr15 31824098 31824424 -53871330 + MLT1I LTR MaLR 83 409 0 23 0 0 0 chr15 31825064 31825087 -53870667 + AT_rich Low_complexity Low_complexity 1 23 0 4793 156 8 27 chr15 31827902 31828150 -53867604 + L1PB3 LINE L1 4979 5230 -924 541 101 0 13 chr15 31828150 31828229 -53867525 - MADE1 DNA Mariner -2 78 1 4793 156 8 27 chr15 31828229 31829076 -53866678 + L1PB3 LINE L1 5230 6050 -104 475 188 0 0 chr15 31829082 31829167 -53866587 - L1P5 LINE L1 -357 5797 5713 689 127 8 8 chr15 31829172 31829290 -53866464 + L1PB3 LINE L1 6036 6153 -1 657 283 50 12 chr15 31829913 31830153 -53865601 + HAL1 LINE L1 1471 1719 -788 2052 113 3 3 chr15 31830219 31830528 -53865226 + AluSx SINE Alu 1 309 0 283 273 91 29 chr15 31830858 31831067 -53864687 + HAL1 LINE L1 2172 2393 -114 22 56 0 0 chr15 31831142 31831178 -53864576 + AT_rich Low_complexity Low_complexity 1 36 0 333 324 66 15 chr15 31831337 31831596 -53864158 + L1ME4a LINE L1 5595 5866 -255 24 53 0 0 chr15 31831615 31831653 -53864101 + AT_rich Low_complexity Low_complexity 1 38 0 1783 155 13 25 chr15 31832252 31832568 -53863186 + AluJo SINE Alu 1 312 0 377 328 21 47 chr15 31832608 31832800 -53862954 + MER5A DNA MER1_type 1 187 -2 271 261 0 0 chr15 31832984 31833049 -53862705 + L1MDa LINE L1 1621 1685 -4855 * 335 263 94 75 chr15 31833032 31833290 -53862464 + L1MD2 LINE L1 5883 6112 -52 21 36 0 0 chr15 31833861 31833889 -53861865 + AT_rich Low_complexity Low_complexity 1 28 0 1607 216 0 0 chr15 31834112 31834442 -53861312 - AluJo SINE Alu 0 331 2 1720 185 99 31 chr15 31834458 31834874 -53860880 - L1MA9 LINE L1 -39 6273 5830 25 51 0 0 chr15 31836284 31836323 -53859431 + AT_rich Low_complexity Low_complexity 1 39 0 2236 73 0 4 chr15 31836372 31836646 -53859108 - AluY SINE Alu -15 296 24 7030 53 5 1 chr15 31837171 31838337 -53857417 + L1PA6 LINE L1 4976 6144 -10 342 0 0 0 chr15 31838338 31838376 -53857378 + (CA)n Simple_repeat Simple_repeat 1 38 0 2185 111 0 0 chr15 31838397 31838695 -53857059 - AluY SINE Alu -13 298 1 323 242 48 97 chr15 31839421 31839586 -53856168 - MER5A DNA MER1_type -29 160 4 28 29 0 0 chr15 31839902 31839937 -53855817 + AT_rich Low_complexity Low_complexity 1 35 0 483 303 0 51 chr15 31841809 31841987 -53853767 + MIR SINE MIR 7 175 -87 202 351 43 11 chr15 31844049 31844143 -53851611 + MER5B DNA MER1_type 31 127 -51 23 33 0 0 chr15 31844161 31844191 -53851563 + AT_rich Low_complexity Low_complexity 1 30 0 605 337 5 16 chr15 31844619 31844809 -53850945 + MER5A DNA MER1_type 1 188 -1 23 54 0 0 chr15 31847388 31847425 -53848329 + AT_rich Low_complexity Low_complexity 1 37 0 25 23 0 23 chr15 31847957 31847986 -53847768 + AT_rich Low_complexity Low_complexity 1 30 -12 2234 103 0 0 chr15 31847986 31848277 -53847477 - AluSx SINE Alu -21 291 1 25 23 0 23 chr15 31848277 31848290 -53847464 + AT_rich Low_complexity Low_complexity 30 42 0 622 139 0 0 chr15 31848290 31848391 -53847363 - L1MA2 LINE L1 0 6304 6204 316 240 54 8 chr15 31849033 31849162 -53846592 - MER69 DNA AcHobo -8 2518 2384 5751 206 62 8 chr15 31849166 31849605 -53846149 + L1 LINE L1 2469 2883 -3263 432 0 0 0 chr15 31849605 31849653 -53846101 + (CA)n Simple_repeat Simple_repeat 1 48 0 5751 206 62 8 chr15 31849653 31850668 -53845086 + L1 LINE L1 2883 4001 -2145 435 321 43 89 chr15 31850813 31851208 -53844546 + L2 LINE L2 2896 3272 0 289 328 104 0 chr15 31851217 31851351 -53844403 + MIR3 SINE MIR 54 201 -7 513 306 11 22 chr15 31851569 31851749 -53844005 - MER5A DNA MER1_type -5 184 7 1259 128 5 29 chr15 31851906 31852110 -53843644 + MER20 DNA MER1_type 18 216 -3 24 0 0 0 chr15 31852156 31852180 -53843574 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr15 31852902 31852924 -53842830 + AT_rich Low_complexity Low_complexity 1 22 0 314 250 68 11 chr15 31853287 31853375 -53842379 - L3b LINE CR1 -197 1386 1294 324 295 216 0 chr15 31853562 31853701 -53842053 - MER5A DNA MER1_type -5 184 16 1854 157 0 17 chr15 31853701 31853877 -53841877 - AluJb SINE Alu -23 289 118 246 81 0 0 chr15 31853877 31853914 -53841840 + (TGG)n Simple_repeat Simple_repeat 1 37 0 1854 157 0 17 chr15 31853914 31854031 -53841723 - AluJb SINE Alu -194 118 1 2151 126 0 0 chr15 31854116 31854410 -53841344 + AluSx SINE Alu 1 294 -18 604 274 106 21 chr15 31854598 31854835 -53840919 + MER90 LTR ERV1 87 343 -232 484 201 166 79 chr15 31854838 31855116 -53840638 + MLT1D LTR MaLR 1 302 -203 188 254 36 0 chr15 31855167 31855222 -53840532 - L2 LINE L2 -536 2778 2722 183 227 23 0 chr15 31855302 31855346 -53840408 - MIR SINE MIR -65 143 99 1249 180 0 0 chr15 31855359 31855570 -53840184 + MLT1D LTR MaLR 295 505 0 835 297 5 5 chr15 31855570 31855786 -53839968 + MER90 LTR ERV1 399 614 0 288 364 91 6 chr15 31856061 31856226 -53839528 - L2 LINE L2 -561 2753 2575 2172 148 85 10 chr15 31856364 31856762 -53838992 + MSTA LTR MaLR 1 428 0 714 298 14 9 chr15 31856875 31857093 -53838661 + MER90 LTR ERV1 396 614 0 180 323 234 16 chr15 31857155 31857279 -53838475 + MIR SINE MIR 41 191 -71 185 325 96 0 chr15 31857489 31857572 -53838182 + MIR SINE MIR 89 179 -83 236 279 15 15 chr15 31858173 31858241 -53837513 + HAL1 LINE L1 784 851 -1656 3369 216 112 59 chr15 31858271 31858317 -53837437 + L1MC4 LINE L1 6735 6777 -1265 2382 78 3 0 chr15 31858317 31858611 -53837143 - AluSc SINE Alu -14 295 1 2471 60 0 10 chr15 31858617 31858919 -53836835 - AluY SINE Alu -12 299 1 3369 216 112 59 chr15 31858919 31859954 -53835800 + L1MC4 LINE L1 6781 7900 -142 693 89 24 0 chr15 31859954 31860078 -53835676 + (TAGA)n Simple_repeat Simple_repeat 2 128 0 3369 216 112 59 chr15 31860078 31860230 -53835524 + L1MC4 LINE L1 7900 8042 0 239 272 142 59 chr15 31860291 31860460 -53835294 - L3 LINE CR1 0 1577 1395 189 336 49 49 chr15 31860701 31860823 -53834931 + L2 LINE L2 3192 3313 0 4807 23 0 0 chr15 31861148 31861708 -53834046 - L1PA3 LINE L1 0 6155 5596 23 54 0 0 chr15 31862189 31862226 -53833528 + AT_rich Low_complexity Low_complexity 1 37 0 619 200 66 36 chr15 31863549 31863718 -53832036 + L1MB5 LINE L1 6012 6184 0 261 324 122 43 chr15 31864750 31864889 -53830865 - MER5A DNA MER1_type -4 185 36 783 265 76 44 chr15 31865336 31865657 -53830097 - MIR SINE MIR 0 262 2 576 319 78 16 chr15 31865789 31866159 -53829595 - MLT1I LTR MaLR -15 394 2 853 140 56 34 chr15 31867248 31867426 -53828328 - L1MB7 LINE L1 -2 6182 6001 2213 74 0 7 chr15 31867531 31867849 -53827905 - AluSx SINE Alu 0 316 1 1251 201 36 0 chr15 31867908 31868197 -53827557 - L1MB7 LINE L1 -222 5962 5660 620 324 114 21 chr15 31868199 31868665 -53827089 + L2 LINE L2 2354 2862 -452 468 252 50 34 chr15 31868705 31868824 -53826930 + L2 LINE L2 3180 3300 -13 320 0 0 24 chr15 31868841 31868882 -53826872 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 949 106 30 0 chr15 31869160 31869292 -53826462 + AluSq/x SINE Alu 1 136 -176 2438 57 10 3 chr15 31870464 31870765 -53824989 - AluY SINE Alu -8 303 1 297 280 97 11 chr15 31870797 31870890 -53824864 - MIR3 SINE MIR -16 192 92 1492 253 102 55 chr15 31871017 31871583 -53824171 + MLT1E LTR MaLR 1 593 0 254 278 0 0 chr15 31872181 31872253 -53823501 + L1ME LINE L1 5800 5871 -250 251 307 11 0 chr15 31872432 31872520 -53823234 - L2 LINE L2 -189 3083 2995 8783 27 0 0 chr15 31873261 31874358 -53821396 - L1P LINE L1 -3214 2932 1836 6977 11 0 1 chr15 31874357 31875186 -53820568 + L1HS LINE L1 5328 6155 0 * 259 107 0 53 chr15 31875194 31875228 -53820526 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 -36 2055 128 0 0 chr15 31875228 31875510 -53820244 - AluSq SINE Alu -31 282 1 259 107 0 53 chr15 31875510 31875550 -53820204 + (CAAAAA)n Simple_repeat Simple_repeat 36 72 0 350 332 108 36 chr15 31875917 31876194 -53819560 + L1MC4a LINE L1 6167 6463 -1345 670 256 38 80 chr15 31876309 31876684 -53819070 + L1MC4 LINE L1 6658 7024 -974 29 0 0 0 chr15 31876685 31876714 -53819040 + AT_rich Low_complexity Low_complexity 1 29 0 476 95 0 14 chr15 31876849 31876923 -53818831 - MADE1 DNA Mariner -5 75 3 810 224 0 0 chr15 31877092 31877244 -53818510 + FRAM SINE Alu 1 151 -25 2314 156 27 0 chr15 31977317 31977760 -53717994 + L1P LINE L1 4879 5333 -813 4033 107 19 0 chr15 31977764 31978425 -53717329 + L1PA10 LINE L1 5215 5886 -282 965 281 66 24 chr15 31978555 31979333 -53716421 - L1MEc LINE L1 -4917 1479 670 3539 172 52 28 chr15 31979434 31979494 -53716260 + MER21A LTR ERV1 23 80 -851 222 37 0 0 chr15 31979494 31979521 -53716233 + (TC)n Simple_repeat Simple_repeat 2 28 0 3539 172 52 28 chr15 31979521 31980292 -53715462 + MER21A LTR ERV1 80 921 -10 422 305 82 70 chr15 31980307 31980832 -53714922 - L1MEc LINE L1 -5831 565 35 15901 166 16 17 chr15 31980984 31982102 -53713652 - L1PA11 LINE L1 0 6174 5056 2286 118 0 0 chr15 31982102 31982398 -53713356 - AluSg SINE Alu -14 296 1 15901 166 16 17 chr15 31982398 31985021 -53710733 - L1PA11 LINE L1 -1118 5056 2406 504 101 0 0 chr15 31985024 31985093 -53710661 - Alu SINE Alu -240 69 1 1021 166 42 0 chr15 31985093 31985286 -53710468 + MER57A LTR ERV1 203 403 0 21 0 0 0 chr15 31986333 31986354 -53709400 + AT_rich Low_complexity Low_complexity 1 21 0 1994 135 0 0 chr15 31986400 31986716 -53709038 - AluSg SINE Alu 0 316 1 23 0 0 0 chr15 31986941 31986964 -53708790 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr15 31987174 31987207 -53708547 + AT_rich Low_complexity Low_complexity 1 33 0 1252 318 162 38 chr15 31988364 31989365 -53706389 - L3 LINE CR1 -16 1561 437 229 143 0 0 chr15 31989492 31989527 -53706227 - U2 snRNA snRNA -150 38 4 1012 167 6 6 chr15 31990001 31990181 -53705573 - MLT1A2 LTR MaLR 0 374 195 897 226 29 39 chr15 31990199 31990478 -53705276 - PABL_B LTR ERV1 -20 647 372 244 293 75 15 chr15 31990503 31990636 -53705118 - PABL_A LTR ERV1 -462 198 58 2846 182 25 20 chr15 31990741 31991385 -53704369 - L1P LINE L1 -1542 4604 3958 241 140 0 0 chr15 31991394 31991444 -53704310 - Alu SINE Alu 0 300 251 1385 107 0 0 chr15 31991444 31991621 -53704133 + AluSx SINE Alu 58 234 -78 1362 175 4 0 chr15 31991641 31991892 -53703862 - L1P LINE L1 -2191 3955 3704 285 309 45 0 chr15 31992211 31992321 -53703433 + L2 LINE L2 3199 3313 0 1979 135 10 0 chr15 31993288 31993576 -53702178 + AluSg SINE Alu 6 296 -14 444 256 58 8 chr15 31993941 31994062 -53701692 - L2 LINE L2 -38 3275 3149 353 270 178 33 chr15 31994630 31994782 -53700972 + MER5A DNA MER1_type 7 180 -9 409 296 37 0 chr15 31995174 31995282 -53700472 - MIR SINE MIR -62 200 89 392 169 14 0 chr15 31996417 31996488 -53699266 - MER94 DNA DNA -62 72 1 455 276 86 31 chr15 31996489 31996652 -53699102 - MIR SINE MIR -79 183 12 317 270 54 9 chr15 31996752 31996863 -53698891 - L3b LINE CR1 -182 1401 1286 240 364 45 0 chr15 31997248 31997358 -53698396 - MIR SINE MIR -111 151 37 497 217 27 65 chr15 31997466 31997650 -53698104 - MER5B DNA MER1_type -1 177 1 435 244 25 8 chr15 31999092 31999211 -53696543 - MLT1A2 LTR MaLR -253 121 1 2247 167 28 9 chr15 31999211 31999641 -53696113 - MLT1A2-int LTR MaLR 0 1735 1298 379 311 32 9 chr15 31999714 31999933 -53695821 + L1ME LINE L1 5544 5767 -354 739 290 79 29 chr15 32000180 32000521 -53695233 + LTR16C LTR ERVL 134 491 0 1805 168 53 16 chr15 32001604 32001979 -53693775 - MLT1B LTR MaLR -1 389 1 23 0 0 0 chr15 32002120 32002143 -53693611 + AT_rich Low_complexity Low_complexity 1 23 0 460 319 86 25 chr15 32003135 32003567 -53692187 + L1M4 LINE L1 3673 4130 -2016 1790 158 10 29 chr15 32004161 32004471 -53691283 - AluJo SINE Alu -8 304 1 1592 166 49 0 chr15 32005184 32005449 -53690305 + AluJb SINE Alu 13 290 -22 24 0 0 0 chr15 32005866 32005890 -53689864 + AT_rich Low_complexity Low_complexity 1 24 0 2384 153 18 44 chr15 32005924 32006428 -53689326 - LTR22B LTR ERVK 0 492 2 393 269 144 10 chr15 32006778 32006986 -53688768 + MLT1J LTR MaLR 274 509 -2 453 301 136 14 chr15 32006988 32007201 -53688553 - MIR SINE MIR -21 241 3 464 346 97 48 chr15 32007532 32007966 -53687788 + L2 LINE L2 2818 3272 0 288 235 78 69 chr15 32010078 32010180 -53685574 - AluJb SINE Alu -199 103 1 186 143 0 0 chr15 32010184 32010219 -53685535 + (TC)n Simple_repeat Simple_repeat 2 36 0 701 52 21 0 chr15 32010222 32010319 -53685435 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 1163 203 5 0 chr15 32010335 32010527 -53685227 - AluJb SINE Alu -34 278 86 250 298 67 29 chr15 32010802 32010906 -53684848 - MIR3 SINE MIR -18 190 83 2270 82 7 7 chr15 32011120 32011414 -53684340 + AluSg SINE Alu 1 294 -16 183 80 0 0 chr15 32013876 32013901 -53681853 + (GA)n Simple_repeat Simple_repeat 2 26 0 1012 214 39 75 chr15 32014000 32014388 -53681366 - L1ME2 LINE L1 -28 6136 5763 192 97 0 0 chr15 32015451 32015482 -53680272 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 1597 199 3 7 chr15 32015482 32015769 -53679985 - AluJo SINE Alu -26 286 1 979 93 0 0 chr15 32015892 32016021 -53679733 - AluSg/x SINE Alu -9 300 172 11531 99 53 13 chr15 32016124 32017984 -53677770 - MER4-int LTR ERV1 -829 5769 3837 607 141 37 61 chr15 32017966 32018129 -53677625 - MER4-int LTR ERV1 -2905 3693 3535 * 28 48 0 0 chr15 32018366 32018408 -53677346 + AT_rich Low_complexity Low_complexity 1 42 0 683 283 20 20 chr15 32018837 32019035 -53676719 + MIR SINE MIR 8 205 -57 815 112 0 2 chr15 32019710 32019971 -53675783 + AluSx SINE Alu 1 312 0 242 231 0 0 chr15 32020072 32020124 -53675630 - L2 LINE L2 -15 3257 3206 1086 312 69 32 chr15 32020267 32020817 -53674937 - L2 LINE L2 -1 3312 2744 21 36 0 0 chr15 32021305 32021333 -53674421 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr15 32021977 32021997 -53673757 + (T)n Simple_repeat Simple_repeat 1 20 0 250 284 140 72 chr15 32022762 32022972 -53672782 + MER115 DNA AcHobo 302 526 -167 1815 175 101 45 chr15 32022972 32023436 -53672318 - LTR2B LTR ERV1 0 490 1 440 144 19 39 chr15 32023436 32023540 -53672214 + MER115 DNA AcHobo 523 624 -69 1208 241 7 13 chr15 32023546 32023845 -53671909 - L1MD2 LINE L1 -23 6336 6040 1278 162 45 121 chr15 32023872 32024511 -53671243 + MER4C LTR ERV1 2 465 0 31 44 0 0 chr15 32025825 32025870 -53669884 + AT_rich Low_complexity Low_complexity 1 45 0 487 281 115 31 chr15 32025962 32026311 -53669443 - L1ME4a LINE L1 -17 6173 5796 364 330 19 0 chr15 32026676 32026779 -53668975 - L2 LINE L2 -19 3253 3149 201 328 17 0 chr15 32027237 32027295 -53668459 + L2 LINE L2 3189 3247 -25 25 31 0 0 chr15 32028044 32028076 -53667678 + AT_rich Low_complexity Low_complexity 1 32 0 999 160 123 11 chr15 32028681 32029068 -53666686 + LTR54 LTR ERV1 1 504 -6 410 268 73 68 chr15 32029685 32030277 -53665477 - L1ME4a LINE L1 -1101 5114 4525 488 302 166 5 chr15 32030403 32030807 -53664947 - L1ME4a LINE L1 -2096 4119 3651 25 0 0 0 chr15 32031340 32031365 -53664389 + AT_rich Low_complexity Low_complexity 1 25 0 296 250 72 20 chr15 32031474 32031668 -53664086 - L1ME4a LINE L1 -3857 2358 2198 456 330 96 10 chr15 32033038 32033247 -53662507 - MIR SINE MIR -15 247 21 1071 333 70 21 chr15 32034293 32034804 -53660950 + MLT1K LTR MaLR 45 580 -8 50 71 0 0 chr15 32034825 32034924 -53660830 + AT_rich Low_complexity Low_complexity 1 99 0 1541 172 0 76 chr15 32035111 32035413 -53660341 + AluJb SINE Alu 7 285 -27 1599 264 72 38 chr15 32036246 32036829 -53658925 - MER67B LTR ERV1 0 661 59 2182 108 7 3 chr15 32036992 32037288 -53658466 + AluSg SINE Alu 1 297 -13 228 235 39 0 chr15 32037510 32037561 -53658193 - L2 LINE L2 -6 3307 3255 2089 144 39 14 chr15 32037825 32038180 -53657574 + MER47A DNA MER2_type 2 365 -1 237 250 36 129 chr15 32038389 32038529 -53657225 + MIR SINE MIR 68 194 -68 2150 114 0 29 chr15 32039166 32039474 -53656280 - AluSq SINE Alu -14 299 1 228 336 92 38 chr15 32039649 32039780 -53655974 + MLT1K LTR MaLR 90 227 -361 2077 243 120 31 chr15 32039780 32040854 -53654900 - L1MEc LINE L1 -2751 3464 2295 972 286 57 20 chr15 32040895 32041402 -53654352 - L1MEc LINE L1 -4021 2375 1850 681 192 196 14 chr15 32041720 32041939 -53653815 - L1MEc LINE L1 -4544 1852 1594 1543 178 8 4 chr15 32041943 32042201 -53653553 + AluJo SINE Alu 2 260 -52 315 0 0 0 chr15 32042941 32042976 -53652778 + (CA)n Simple_repeat Simple_repeat 2 36 0 2969 140 16 6 chr15 32043511 32044012 -53651742 + L1PA16 LINE L1 5652 6157 -9 279 0 0 0 chr15 32044550 32044581 -53651173 + (TG)n Simple_repeat Simple_repeat 1 31 0 1997 141 30 0 chr15 32044804 32045103 -53650651 - AluSx SINE Alu 0 312 5 290 331 59 29 chr15 32045445 32045581 -53650173 - L2 LINE L2 -10 3262 3123 4651 144 24 1 chr15 32046342 32047164 -53648590 - L1MA4 LINE L1 -5 6295 5455 273 267 242 0 chr15 32047826 32047946 -53647808 + MIR SINE MIR 33 181 -81 201 154 0 0 chr15 32048651 32048690 -53647064 + (TG)n Simple_repeat Simple_repeat 2 40 0 221 318 142 34 chr15 32049166 32049342 -53646412 + MIR SINE MIR 9 203 -59 679 297 57 9 chr15 32051057 32051269 -53644485 + MIR SINE MIR 41 262 0 334 26 0 0 chr15 32052224 32052263 -53643491 - MADE1 DNA Mariner -41 39 1 905 239 101 80 chr15 32052845 32053204 -53642550 - L1MC5 LINE L1 -50 7911 7530 3862 24 0 9 chr15 32053204 32053693 -53642061 - L1PA3 LINE L1 0 6155 5703 905 239 101 80 chr15 32053693 32054018 -53641736 - L1MC5 LINE L1 -431 7530 7213 201 39 0 0 chr15 32055006 32055032 -53640722 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 228 191 0 0 chr15 32056587 32056629 -53639125 + Charlie8 DNA MER1_type 223 264 -2153 1621 170 4 11 chr15 32057112 32057383 -53638371 + AluJo SINE Alu 35 303 -9 2225 181 35 27 chr15 32057405 32057724 -53638030 - L1MB2 LINE L1 -19 6152 5826 1902 127 6 62 chr15 32057724 32058046 -53637708 - AluSq SINE Alu -9 304 1 2225 181 35 27 chr15 32058046 32058213 -53637541 - L1PA11 LINE L1 -345 5826 5662 1920 118 38 13 chr15 32058213 32058526 -53637228 + L1PA11 LINE L1 5848 6169 -5 1808 156 18 9 chr15 32058530 32058856 -53636898 - L1MB2 LINE L1 -511 5660 5332 1287 233 41 6 chr15 32058863 32059206 -53636548 + L1 LINE L1 4878 5232 -914 237 318 0 12 chr15 32060756 32060841 -53634913 - MIR SINE MIR -126 136 53 741 288 36 24 chr15 32060981 32061231 -53634523 - MIR SINE MIR -5 257 5 23 33 0 0 chr15 32061558 32061588 -53634166 + AT_rich Low_complexity Low_complexity 1 30 0 265 249 64 98 chr15 32061670 32061843 -53633911 + MIR SINE MIR 46 212 -50 340 314 113 8 chr15 32062065 32062189 -53633565 - L2 LINE L2 0 3272 3136 2114 210 10 0 chr15 32062435 32062821 -53632933 - MLT1F1 LTR MaLR -53 514 125 195 42 0 0 chr15 32064131 32064155 -53631599 + (TC)n Simple_repeat Simple_repeat 1 24 0 1228 91 42 0 chr15 32064155 32064320 -53631434 - AluSg/x SINE Alu -11 301 130 21 0 0 0 chr15 32069912 32069933 -53625821 + AT_rich Low_complexity Low_complexity 1 21 0 1453 86 5 0 chr15 32070421 32070619 -53625135 + L1PA12 LINE L1 5966 6164 -4 328 329 45 26 chr15 32071676 32071831 -53623923 - MIR3 SINE MIR -8 200 43 1563 186 7 28 chr15 32071902 32072187 -53623567 - AluJo SINE Alu -33 279 1 811 207 44 16 chr15 32072401 32072672 -53623082 + L1MC2 LINE L1 5916 6155 -189 895 210 73 5 chr15 32072681 32072900 -53622854 + MER39 LTR ERV1 19 252 -455 2105 140 31 3 chr15 32072933 32073291 -53622463 + MER39 LTR ERV1 340 707 0 6686 177 59 22 chr15 32073301 32074812 -53620942 + L1MC3 LINE L1 6212 7777 -8 30685 103 13 55 chr15 32075129 32077692 -53618062 - L1PA7 LINE L1 -2 6152 3485 2329 103 0 0 chr15 32077692 32077992 -53617762 - AluY SINE Alu -11 300 1 30685 103 13 55 chr15 32077992 32081849 -53613905 - L1PA7 LINE L1 -2669 3485 9 260 234 9 27 chr15 32082357 32082468 -53613286 - L1MC5 LINE L1 -46 7915 7807 2154 109 61 0 chr15 32082633 32082926 -53612828 + AluSx SINE Alu 1 311 -1 28 48 0 0 chr15 32083032 32083074 -53612680 + AT_rich Low_complexity Low_complexity 1 42 0 330 267 51 56 chr15 32084358 32084553 -53611201 + MLT1J LTR MaLR 293 486 -25 206 229 16 82 chr15 32084563 32084624 -53611130 - MIR3 SINE MIR -35 173 117 * 633 255 82 25 chr15 32084620 32084816 -53610938 + L2 LINE L2 3106 3312 -1 677 227 0 8 chr15 32084998 32085130 -53610624 - FLAM_A SINE Alu -2 131 1 258 302 38 9 chr15 32085298 32085404 -53610350 - MER103 DNA DNA -45 121 13 270 81 0 0 chr15 32085749 32085786 -53609968 + (CAT)n Simple_repeat Simple_repeat 1 37 0 252 130 0 0 chr15 32085957 32086003 -53609751 + (CA)n Simple_repeat Simple_repeat 2 47 0 1273 167 46 49 chr15 32086190 32086519 -53609235 - L1MA9 LINE L1 -3 6309 5982 461 282 245 28 chr15 32086521 32086844 -53608910 + L2 LINE L2 2895 3287 -26 1761 75 83 0 chr15 32087143 32087384 -53608370 - AluSp SINE Alu -22 291 31 21 36 0 0 chr15 32087744 32087772 -53607982 + AT_rich Low_complexity Low_complexity 1 28 0 282 284 29 0 chr15 32087884 32087986 -53607768 - Charlie8 DNA MER1_type -1926 491 387 636 244 110 34 chr15 32088708 32088766 -53606988 - L1ME4a LINE L1 -262 5859 5807 2249 97 0 22 chr15 32088766 32089077 -53606677 - AluY SINE Alu -7 304 1 636 244 110 34 chr15 32089077 32089346 -53606408 - L1ME4a LINE L1 -314 5807 5507 234 334 194 22 chr15 32089390 32089755 -53605999 + L2 LINE L2 1311 1738 -1576 698 247 91 5 chr15 32092290 32092509 -53603245 + MIR SINE MIR 15 252 -10 3489 133 35 68 chr15 32092669 32092951 -53602803 + L1MA9 LINE L1 5555 5845 -467 297 0 0 0 chr15 32092951 32092984 -53602770 + (CA)n Simple_repeat Simple_repeat 2 34 0 3489 133 35 68 chr15 32092984 32093435 -53602319 + L1MA9 LINE L1 5845 6264 -48 1716 156 58 0 chr15 32093603 32093879 -53601875 + AluJb SINE Alu 1 292 -20 1855 118 62 54 chr15 32094251 32094623 -53601131 - THE1C LTR MaLR 0 375 1 27 29 0 0 chr15 32094918 32094952 -53600802 + AT_rich Low_complexity Low_complexity 1 34 0 420 272 78 42 chr15 32095077 32095268 -53600486 + MIR SINE MIR 65 262 0 397 301 19 0 chr15 32095303 32095406 -53600348 + L2 LINE L2 3168 3272 0 1453 180 88 0 chr15 32096025 32096124 -53599630 + AluJb SINE Alu 18 107 -205 227 54 27 0 chr15 32096124 32096161 -53599593 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 1453 180 88 0 chr15 32096161 32096322 -53599432 + AluJb SINE Alu 107 301 -11 256 149 45 45 chr15 32096807 32096874 -53598880 - L1MC/D LINE L1 -1908 5900 5834 193 264 57 0 chr15 32096958 32097011 -53598743 - MIR3 SINE MIR -52 156 101 1783 84 26 0 chr15 32097023 32097250 -53598504 + AluSc SINE Alu 1 233 -76 3423 110 45 23 chr15 32097848 32098422 -53597332 + LTR18B LTR ERVL 1 587 -27 8733 195 37 10 chr15 32098457 32100746 -53595008 + HERVL18 LTR ERVL 4 2452 -3595 1448 161 4 4 chr15 32100745 32100987 -53594767 + HERVL18 LTR ERVL 2720 2961 -3086 * 2970 207 4 2 chr15 32101023 32101573 -53594181 + HERVL18 LTR ERVL 2941 3491 -2556 3177 113 64 23 chr15 32101761 32102325 -53593429 + LTR18B LTR ERVL 1 587 -27 319 304 161 19 chr15 32104158 32104319 -53591435 + MER5A DNA MER1_type 1 184 -5 356 331 27 49 chr15 32104321 32104505 -53591249 - MER5A DNA MER1_type -9 180 1 530 297 138 22 chr15 32106662 32106894 -53588860 + MIR SINE MIR 1 259 -3 26 0 0 0 chr15 32107456 32107482 -53588272 + AT_rich Low_complexity Low_complexity 1 26 0 289 300 62 12 chr15 32107659 32107819 -53587935 - L1ME LINE L1 -303 5818 5651 1819 139 80 0 chr15 32107844 32108131 -53587623 + AluSq SINE Alu 1 310 -3 483 329 58 75 chr15 32108283 32108642 -53587112 - L2 LINE L2 0 3272 2920 278 341 0 0 chr15 32109719 32109804 -53585950 + MIR SINE MIR 48 132 -130 272 352 62 31 chr15 32109963 32110091 -53585663 - MIR3 SINE MIR -62 146 15 321 292 0 0 chr15 32110830 32110902 -53584852 + L2 LINE L2 3237 3308 -5 2198 107 13 13 chr15 32111477 32111786 -53583968 + AluSx SINE Alu 1 309 -3 433 325 15 45 chr15 32111805 32112005 -53583749 + MIR SINE MIR 23 216 -46 207 323 182 20 chr15 32113833 32113932 -53581822 + MIR SINE MIR 30 144 -64 184 336 100 74 chr15 32114068 32114407 -53581347 - L2 LINE L2 -15 3257 2910 907 247 57 4 chr15 32114593 32114820 -53580934 - MIR SINE MIR -22 240 2 497 297 174 27 chr15 32114843 32115257 -53580497 - L2 LINE L2 -618 2696 2222 3723 102 2 4 chr15 32115611 32116123 -53579631 - MER9 LTR ERVK 0 511 1 2710 94 6 0 chr15 32116553 32116915 -53578839 - THE1B LTR MaLR 0 364 1 830 256 177 67 chr15 32117483 32118019 -53577735 - MLT1H1 LTR MaLR 0 555 1 264 234 195 0 chr15 32118311 32118388 -53577366 - L2 LINE L2 -32 3281 3190 2195 113 0 0 chr15 32118688 32119021 -53576733 - AluSx SINE Alu 0 333 1 2181 93 7 0 chr15 32119583 32119863 -53575891 + AluSc SINE Alu 3 284 -25 261 0 0 0 chr15 32119867 32119896 -53575858 + (CAA)n Simple_repeat Simple_repeat 2 30 0 644 346 77 35 chr15 32120114 32120749 -53575005 + L2 LINE L2 1990 2651 -663 207 100 0 0 chr15 32120895 32120925 -53574829 + (CATATA)n Simple_repeat Simple_repeat 6 35 0 248 459 4 0 chr15 32121124 32121370 -53574384 + L2 LINE L2 2805 3051 -221 2221 143 29 61 chr15 32121416 32121858 -53573896 - MSTA LTR MaLR 0 428 1 209 306 65 37 chr15 32122153 32122177 -53573577 - MIR SINE MIR -80 182 160 1698 215 5 11 chr15 32122177 32122544 -53573210 - MLT1A1 LTR MaLR 0 365 1 209 306 65 37 chr15 32122544 32122627 -53573127 - MIR SINE MIR -102 160 72 17254 179 21 110 chr15 32123077 32127341 -53568413 + L1P3 LINE L1 3 4185 -2276 2435 112 89 63 chr15 32127341 32127814 -53567940 - LTR21A LTR ERV1 -19 486 2 17254 179 21 110 chr15 32127814 32128695 -53567059 + L1P3 LINE L1 4185 5142 -1319 981 119 0 0 chr15 32128796 32128930 -53566824 - AluSq/x SINE Alu -178 134 1 301 304 132 53 chr15 32128973 32129276 -53566478 - L1 LINE L1 -1059 5087 4761 23 0 0 0 chr15 32129548 32129571 -53566183 + AT_rich Low_complexity Low_complexity 1 23 0 235 211 13 26 chr15 32129613 32129689 -53566065 - L1M4 LINE L1 -1097 5049 4975 1138 243 36 45 chr15 32129703 32130123 -53565631 - L1M4 LINE L1 -3621 2525 2110 31 0 0 0 chr15 32130178 32130209 -53565545 + AT_rich Low_complexity Low_complexity 1 31 0 1859 142 0 9 chr15 32130216 32130534 -53565220 - L1PA13 LINE L1 0 6163 5849 21 36 0 0 chr15 32130760 32130788 -53564966 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr15 32130944 32130972 -53564782 + AT_rich Low_complexity Low_complexity 1 28 0 270 321 127 0 chr15 32133664 32133798 -53561956 + MIR3 SINE MIR 55 205 -3 26 0 0 0 chr15 32134532 32134558 -53561196 + AT_rich Low_complexity Low_complexity 1 26 0 325 338 94 38 chr15 32134788 32135128 -53560626 + L2 LINE L2 2429 2787 -527 343 322 14 27 chr15 32135431 32135577 -53560177 + MIR SINE MIR 82 225 -37 2723 57 3 19 chr15 32135908 32136277 -53559477 - L1PA8A LINE L1 0 6131 5769 594 51 0 0 chr15 32136304 32136382 -53559372 - L1PA3 LINE L1 -3 6152 6075 209 241 37 0 chr15 32136383 32136437 -53559317 + (TATG)n Simple_repeat Simple_repeat 1 56 0 400 324 0 0 chr15 32139751 32139856 -53555898 + L2 LINE L2 3168 3272 0 22 35 0 0 chr15 32140344 32140373 -53555381 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr15 32141450 32141492 -53554262 + AT_rich Low_complexity Low_complexity 1 42 0 644 329 25 25 chr15 32141780 32142063 -53553691 - HERV16 LTR ERVL -774 4990 4708 662 330 34 0 chr15 32142291 32142500 -53553254 - HERV16 LTR ERVL -1332 4432 4217 659 321 48 11 chr15 32142545 32142785 -53552969 - HERV16 LTR ERVL -3433 1563 1357 2119 326 40 25 chr15 32143000 32144009 -53551745 - HERV16 LTR ERVL -3897 1099 76 525 322 81 0 chr15 32144141 32144290 -53551464 - LTR16A LTR ERVL -114 336 176 23 0 0 0 chr15 32145347 32145370 -53550384 + AT_rich Low_complexity Low_complexity 1 23 0 32 43 0 0 chr15 32145739 32145785 -53549969 + AT_rich Low_complexity Low_complexity 1 46 0 201 349 64 60 chr15 32145799 32146080 -53549674 - L2 LINE L2 -705 2609 2328 4280 243 115 34 chr15 32147430 32148737 -53547017 - L1ME2 LINE L1 -9 6155 4955 1901 165 7 0 chr15 32148737 32149046 -53546708 - AluJb SINE Alu -1 311 1 4280 243 115 34 chr15 32149046 32150964 -53544790 - L1ME2 LINE L1 -1209 4955 2666 181 222 0 0 chr15 32151226 32151262 -53544492 + MIR SINE MIR 78 113 -149 564 311 99 9 chr15 32152559 32152781 -53542973 - MIR SINE MIR 0 262 21 2375 78 3 3 chr15 32152948 32153255 -53542499 + AluY SINE Alu 1 307 -4 223 263 76 93 chr15 32153288 32153406 -53542348 + MIR SINE MIR 90 205 -57 271 350 86 7 chr15 32153834 32153974 -53541780 + MIR3 SINE MIR 3 153 -55 3379 105 28 42 chr15 32154482 32154674 -53541080 - L1MA2 LINE L1 -4 6300 6107 2180 86 4 0 chr15 32154674 32154995 -53540759 + AluY SINE Alu 1 322 0 3379 105 28 42 chr15 32154995 32155370 -53540384 - L1MA2 LINE L1 -197 6107 5739 3354 123 6 2 chr15 32155470 32156109 -53539645 - L1MA2 LINE L1 -558 5746 5105 727 279 73 9 chr15 32156386 32156619 -53539135 + MIR SINE MIR 3 250 -12 192 259 92 97 chr15 32157092 32157277 -53538477 + MIR SINE MIR 79 262 0 3009 109 2 2 chr15 32158386 32158825 -53536929 + L1PA10 LINE L1 5717 6155 -13 387 295 85 30 chr15 32159302 32159502 -53536252 + MIR SINE MIR 50 260 -2 233 305 166 13 chr15 32159904 32160055 -53535699 + MIR SINE MIR 78 251 -11 785 288 12 33 chr15 32160428 32160587 -53535167 - MIR SINE MIR -2 260 106 1829 143 4 0 chr15 32160587 32160859 -53534895 - AluSc SINE Alu 0 309 37 785 288 12 33 chr15 32160859 32160942 -53534812 - MIR SINE MIR -156 106 23 183 367 60 33 chr15 32161541 32161691 -53534063 - L2 LINE L2 -338 2975 2822 196 308 0 0 chr15 32161770 32161822 -53533932 - L2 LINE L2 -672 2642 2591 270 0 0 0 chr15 32168537 32168567 -53527187 + (TG)n Simple_repeat Simple_repeat 1 30 0 185 271 107 36 chr15 32169897 32170037 -53525717 + L2 LINE L2 3161 3310 -3 511 283 46 6 chr15 32170184 32170357 -53525397 - MIR SINE MIR -26 236 57 234 213 21 0 chr15 32170931 32170978 -53524776 + MER5B DNA MER1_type 2 49 -129 2280 103 0 31 chr15 32171402 32171722 -53524032 - AluSg SINE Alu 0 310 1 4243 168 22 27 chr15 32172195 32172838 -53522916 - L1MA7 LINE L1 -4 6287 5648 1741 151 0 108 chr15 32172838 32173228 -53522526 + MER7A DNA MER2_type 1 346 0 4243 168 22 27 chr15 32173228 32173448 -53522306 - L1MA7 LINE L1 -643 5648 5428 785 174 48 18 chr15 32173459 32173626 -53522128 - AluJo SINE Alu -20 292 121 1426 192 20 9 chr15 32173626 32173945 -53521809 - L1MA7 LINE L1 -744 5402 5099 306 327 96 45 chr15 32174232 32174431 -53521323 - MIR SINE MIR -34 228 20 2335 62 13 3 chr15 32175777 32176084 -53519670 + AluY SINE Alu 2 311 0 331 283 56 56 chr15 32176104 32176302 -53519452 + MARNA DNA Mariner 280 477 -109 556 297 89 38 chr15 32176499 32176735 -53519019 - MIR SINE MIR 0 262 15 235 294 165 18 chr15 32177641 32177750 -53518004 - MER5A DNA MER1_type -1 188 64 272 288 34 51 chr15 32177799 32177917 -53517837 + L2 LINE L2 2171 2286 -1028 207 207 17 0 chr15 32177919 32177977 -53517777 + (TTCA)n Simple_repeat Simple_repeat 3 61 0 633 311 73 76 chr15 32177979 32178307 -53517447 - L2 LINE L2 -49 3223 2897 205 196 0 22 chr15 32178310 32178356 -53517398 + A-rich Low_complexity Low_complexity 5 49 0 2101 128 0 3 chr15 32178511 32178809 -53516945 - AluSx SINE Alu -15 297 1 1206 64 0 19 chr15 32179823 32179980 -53515774 - AluY SINE Alu -9 302 149 294 200 29 14 chr15 32180000 32180070 -53515684 + MIR SINE MIR 91 161 -101 414 314 53 53 chr15 32181071 32181374 -53514380 + LTR16C LTR ERVL 188 490 -1 187 283 53 53 chr15 32181376 32181489 -53514265 - MIR SINE MIR -97 165 53 977 187 80 126 chr15 32181744 32182118 -53513636 - MLT1A1 LTR MaLR -8 357 1 1889 62 0 0 chr15 32182401 32182625 -53513129 - AluY SINE Alu -51 260 37 339 293 55 55 chr15 32183728 32183892 -53511862 - MIR3 SINE MIR -3 205 42 2337 93 0 3 chr15 32183951 32184283 -53511471 + L1PB1 LINE L1 5821 6151 0 264 313 99 30 chr15 32184623 32184754 -53511000 - MER5A DNA MER1_type 0 189 50 252 255 0 20 chr15 32184792 32184843 -53510911 - MIR3 SINE MIR -48 160 111 279 289 0 11 chr15 32185211 32185301 -53510453 + LTR33 LTR ERVL 46 134 -387 230 330 184 0 chr15 32186135 32186347 -53509407 + L1MC/D LINE L1 5544 5794 -2014 419 213 43 0 chr15 32187408 32187502 -53508252 + MER20 DNA MER1_type 89 186 -33 278 256 24 37 chr15 32187507 32187589 -53508165 - MIR3 SINE MIR -41 167 87 194 289 19 0 chr15 32187947 32187999 -53507755 + MIR3 SINE MIR 153 205 -3 399 306 38 19 chr15 32188475 32188632 -53507122 + MIR SINE MIR 84 243 -19 25 0 0 0 chr15 32188700 32188725 -53507029 + AT_rich Low_complexity Low_complexity 1 25 0 24 67 0 0 chr15 32188974 32189019 -53506735 + AT_rich Low_complexity Low_complexity 1 45 0 27 0 0 0 chr15 32189135 32189162 -53506592 + AT_rich Low_complexity Low_complexity 1 27 0 227 111 0 0 chr15 32189219 32189264 -53506490 + LTR66 LTR ERVL 394 438 -172 1758 153 13 36 chr15 32189264 32189572 -53506182 - AluSx SINE Alu -11 301 1 529 295 4 97 chr15 32190683 32190920 -53504834 + L2 LINE L2 2101 2315 -999 560 236 104 91 chr15 32190921 32191306 -53504448 + L2 LINE L2 2536 2925 -389 328 217 52 61 chr15 32191313 32191428 -53504326 - LTR16C LTR ERVL -11 480 367 586 189 151 19 chr15 32191496 32191655 -53504099 + MER5A DNA MER1_type 9 188 -1 586 243 82 29 chr15 32191655 32191861 -53503893 - LTR16C LTR ERVL -196 295 79 701 287 43 55 chr15 32191921 32192249 -53503505 + L2 LINE L2 2923 3246 -67 314 350 118 43 chr15 32192286 32192677 -53503077 - L1MC4a LINE L1 -1872 5936 5517 886 236 66 12 chr15 32192712 32192954 -53502800 + MIR SINE MIR 6 260 -2 496 186 157 2 chr15 32193142 32193317 -53502437 + MER46A DNA MER2_type 1 235 -1 310 360 0 0 chr15 32193515 32193615 -53502139 + L1MC4a LINE L1 6441 6540 -1268 2450 81 0 0 chr15 32193711 32194020 -53501734 + AluY SINE Alu 1 309 -2 3312 182 20 46 chr15 32195049 32195812 -53499942 - L1MB7 LINE L1 -11 6173 5431 483 248 0 0 chr15 32195831 32195944 -53499810 - L1MA9 LINE L1 -38 6274 6162 * 2288 179 42 11 chr15 32195938 32196493 -53499261 - L1MB7 LINE L1 -744 5434 4854 1092 232 21 21 chr15 32196853 32197189 -53498565 - L1MC4 LINE L1 -732 7310 6975 1276 269 131 12 chr15 32197190 32197755 -53497999 - L1MC4 LINE L1 -1923 5885 5254 239 61 122 0 chr15 32197797 32197846 -53497908 - L1MB4 LINE L1 0 6180 6126 2341 145 57 15 chr15 32198385 32198862 -53496892 - L1MB4 LINE L1 -6 6174 5678 2179 88 3 7 chr15 32201116 32201410 -53494344 - AluSx SINE Alu -19 293 1 414 282 77 38 chr15 32202144 32202646 -53493108 - L1P LINE L1 -871 5275 4762 279 0 0 0 chr15 32202776 32202807 -53492947 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6682 8 0 0 chr15 32202902 32203652 -53492102 - L1PA2 LINE L1 -2 6153 5404 243 51 26 26 chr15 32204057 32204096 -53491658 - MADE1 DNA Mariner -41 39 1 1484 151 3 120 chr15 32204147 32204471 -53491283 - AluSx SINE Alu -26 286 1 4823 97 35 17 chr15 32204623 32205376 -53490378 - L1MA3 LINE L1 0 6305 5540 220 321 92 9 chr15 32205459 32205568 -53490186 + L2 LINE L2 3136 3253 -19 203 175 0 0 chr15 32205933 32205973 -53489781 + T-rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr15 32206567 32206596 -53489158 + AT_rich Low_complexity Low_complexity 1 29 0 34833 38 0 1 chr15 32207206 32212271 -53483483 + L1PA4 LINE L1 1094 6155 0 624 266 11 11 chr15 32213034 32213222 -53482532 + MER5A DNA MER1_type 1 188 -1 523 305 138 0 chr15 32215905 32216072 -53479682 - MLT1J2 LTR MaLR -21 429 240 472 234 48 8 chr15 32216125 32216249 -53479505 - MLT1J2 LTR MaLR -319 131 3 355 115 16 0 chr15 32218321 32218382 -53477372 - MER53 DNA DNA -3 186 125 413 316 79 7 chr15 32218657 32218809 -53476945 - MIR3 SINE MIR -41 167 5 990 226 15 5 chr15 32218809 32219013 -53476741 + MER58A DNA MER1_type 19 224 0 321 309 143 17 chr15 32220334 32220509 -53475245 - MIR SINE MIR -43 219 23 239 348 30 49 chr15 32220612 32220776 -53474978 - L2 LINE L2 -10 3262 3102 224 354 46 15 chr15 32221191 32221321 -53474433 - MIR3 SINE MIR -73 135 2 643 291 114 0 chr15 32221353 32221652 -53474102 - MER46C DNA MER2_type -1 337 5 236 280 208 0 chr15 32221678 32221803 -53473951 + MIR SINE MIR 112 262 0 1358 212 67 3 chr15 32221975 32222291 -53473463 + MER58B DNA MER1_type 6 341 0 8875 92 8 2 chr15 32223291 32225330 -53470424 - L1PA7 LINE L1 -1 6153 4106 328 143 0 143 chr15 32225563 32225611 -53470143 - MADE1 DNA Mariner -4 76 43 1978 48 0 183 chr15 32225611 32225988 -53469766 + AluY SINE Alu 1 308 -3 328 143 0 143 chr15 32225988 32226023 -53469731 - MADE1 DNA Mariner -37 43 5 467 261 140 19 chr15 32226309 32226466 -53469288 - MIR3 SINE MIR -25 183 8 3183 14 0 0 chr15 32226521 32226885 -53468869 - L1PA2 LINE L1 -4 6151 5788 234 368 35 9 chr15 32227387 32227501 -53468253 - MIR SINE MIR -62 146 30 2092 122 26 0 chr15 32227776 32228080 -53467674 - AluSx SINE Alu 0 312 1 12530 229 26 13 chr15 32228244 32232884 -53462870 - L1PB4 LINE L1 -11 6848 2148 883 259 18 26 chr15 32232900 32233395 -53462359 - L1PB4 LINE L1 -4912 1937 1355 230 301 0 0 chr15 32233415 32233488 -53462266 - L1PB4 LINE L1 -5304 1545 1473 369 338 102 47 chr15 32234313 32234656 -53461098 - L1PB4 LINE L1 -6431 419 58 322 323 45 76 chr15 32234916 32235139 -53460615 + MIR SINE MIR 37 252 -10 22 70 0 0 chr15 32235392 32235435 -53460319 + AT_rich Low_complexity Low_complexity 1 43 0 526 190 10 0 chr15 32236024 32236124 -53459630 - AluJo SINE Alu -178 134 34 1427 200 64 0 chr15 32236346 32236676 -53459078 - L1MA5 LINE L1 0 6300 5950 2104 118 10 3 chr15 32237139 32237444 -53458310 - AluSg SINE Alu -3 307 1 665 336 40 8 chr15 32237645 32237898 -53457856 - L3 LINE CR1 -5 1572 1312 191 333 69 0 chr15 32239051 32239153 -53456601 + MIR SINE MIR 134 242 -20 551 288 128 55 chr15 32240951 32241444 -53454310 - L1 LINE L1 -1491 4655 4127 323 263 207 20 chr15 32241981 32242179 -53453575 - MIR SINE MIR 0 262 28 788 268 49 100 chr15 32243491 32243979 -53451775 + LTR16B LTR ERVL 1 463 -1 465 233 185 0 chr15 32245124 32245270 -53450484 + MER5A DNA MER1_type 16 188 -1 302 253 46 0 chr15 32246027 32246114 -53449640 + L2 LINE L2 1747 1837 -1477 2045 124 0 0 chr15 32247746 32248052 -53447702 - AluSx SINE Alu 0 306 1 1448 316 175 27 chr15 32248844 32249390 -53446364 + L2 LINE L2 1076 1540 -1774 2122 117 3 35 chr15 32249390 32249707 -53446047 + AluSq SINE Alu 1 307 -6 1448 316 175 27 chr15 32249707 32250272 -53445482 + L2 LINE L2 1540 2352 -962 200 266 128 75 chr15 32250296 32250484 -53445270 + L2 LINE L2 2497 2694 -620 238 136 0 119 chr15 32250496 32250555 -53445199 - L1ME3 LINE L1 -4 6158 6107 358 262 173 47 chr15 32250582 32250796 -53444958 - L1ME LINE L1 -5151 919 679 209 309 24 71 chr15 32250806 32250890 -53444864 - MIR3 SINE MIR -125 83 4 2104 115 0 17 chr15 32251166 32251461 -53444293 - AluSg SINE Alu -20 290 1 218 250 0 16 chr15 32252749 32252813 -53442941 + (CA)n Simple_repeat Simple_repeat 2 64 0 2282 91 3 7 chr15 32253312 32253620 -53442134 - AluSc SINE Alu -2 307 1 306 301 173 0 chr15 32253717 32253873 -53441881 - HAL1 LINE L1 -643 1864 1682 556 332 79 53 chr15 32254002 32254914 -53440840 - HAL1 LINE L1 -1245 1262 327 2380 65 0 3 chr15 32257771 32258064 -53437690 - AluY SINE Alu -19 292 1 483 130 0 0 chr15 32258831 32258908 -53436846 + (TCCCC)n Simple_repeat Simple_repeat 2 78 0 2069 146 13 0 chr15 32258911 32259219 -53436535 - AluSx SINE Alu 0 312 1 1999 144 0 10 chr15 32259573 32259872 -53435882 + AluSx SINE Alu 1 296 -16 2579 190 29 59 chr15 32261219 32261850 -53433904 - LTR9 LTR ERV1 0 612 1 224 229 21 0 chr15 32262267 32262315 -53433439 + GA-rich Low_complexity Low_complexity 2 50 0 2021 116 0 0 chr15 32262627 32262903 -53432851 + AluY SINE Alu 23 298 -13 335 317 98 40 chr15 32263495 32264102 -53431652 - L1MC4a LINE L1 -273 5889 5288 24 32 0 0 chr15 32264147 32264178 -53431576 + AT_rich Low_complexity Low_complexity 1 31 0 238 200 0 0 chr15 32264487 32264532 -53431222 + Tigger1 DNA MER2_type 1 45 -2373 697 111 16 24 chr15 32264551 32264677 -53431077 - L1MA4 LINE L1 0 6300 6176 26 0 0 0 chr15 32264677 32264703 -53431051 + AT_rich Low_complexity Low_complexity 1 26 0 224 330 117 67 chr15 32264789 32265028 -53430726 - L2 LINE L2 0 3272 3022 300 204 43 0 chr15 32265057 32265150 -53430604 - L1MB3 LINE L1 0 6183 6087 5619 191 26 33 chr15 32265198 32266173 -53429581 - L1MA4 LINE L1 -7 6293 5312 198 71 0 0 chr15 32266173 32266201 -53429553 + (TTG)n Simple_repeat Simple_repeat 1 28 0 5619 191 26 33 chr15 32266201 32266661 -53429093 - L1MA4 LINE L1 -988 5312 4850 1628 182 7 4 chr15 32266661 32266941 -53428813 - AluJb SINE Alu -31 281 1 5619 191 26 33 chr15 32266941 32268243 -53427511 - L1MA4 LINE L1 -1450 4850 3472 13533 145 42 8 chr15 32268261 32270557 -53425197 + Tigger1 DNA MER2_type 45 2418 0 303 310 53 42 chr15 32270850 32271282 -53424472 - L1M4 LINE L1 -1643 4503 4067 2459 268 55 7 chr15 32271539 32272356 -53423398 - L1ME2 LINE L1 -10 6154 5299 275 218 23 11 chr15 32272396 32272483 -53423271 + (TA)n Simple_repeat Simple_repeat 2 89 0 2994 242 68 29 chr15 32272626 32274243 -53421511 - L1MD2 LINE L1 -2 6751 5013 1886 154 0 3 chr15 32274243 32274528 -53421226 + AluSg SINE Alu 1 284 -26 2994 242 68 29 chr15 32274528 32274687 -53421067 - L1MD2 LINE L1 -1740 5013 4862 737 223 91 4 chr15 32274703 32274968 -53420786 - L1MD2 LINE L1 -3591 2949 2662 1232 209 91 11 chr15 32275019 32275597 -53420157 + L1MDa LINE L1 2326 2948 -3592 6593 72 8 2 chr15 32275611 32276761 -53418993 + L1PA7 LINE L1 4982 6136 -18 284 76 86 9 chr15 32276772 32276877 -53418877 + (TA)n Simple_repeat Simple_repeat 2 114 0 2104 215 21 0 chr15 32276911 32277376 -53418378 + L1 LINE L1 4070 4544 -1602 516 266 54 10 chr15 32277390 32277593 -53418161 - L1MD2 LINE L1 -5240 1300 1089 1278 251 60 102 chr15 32277729 32278231 -53417523 - L1MD2 LINE L1 -5454 1086 606 647 224 68 0 chr15 32278229 32278376 -53417378 - L1MD2 LINE L1 -6365 175 19 * 977 270 106 82 chr15 32278378 32279312 -53416442 - L1M4 LINE L1 -2293 3853 2898 2528 53 0 0 chr15 32279482 32279786 -53415968 - AluY SINE Alu -7 304 1 292 320 23 39 chr15 32280091 32280219 -53415535 + L2 LINE L2 3147 3272 0 1245 215 23 4 chr15 32280579 32280835 -53414919 + Tigger7 DNA MER2_type 1 261 -472 444 235 0 10 chr15 32280840 32280938 -53414816 + Tigger7 DNA MER2_type 2394 2490 -1 2274 87 7 13 chr15 32281255 32281564 -53414190 - AluY SINE Alu -4 307 1 251 239 71 71 chr15 32282336 32282449 -53413305 - MIR3 SINE MIR -10 198 86 307 255 20 10 chr15 32282937 32283039 -53412715 + (TA)n Simple_repeat Simple_repeat 1 103 0 8847 194 53 99 chr15 32283101 32283244 -53412510 - L1MA9 LINE L1 0 6312 6164 225 0 0 0 chr15 32283244 32283269 -53412485 + (TG)n Simple_repeat Simple_repeat 1 25 0 8847 194 53 99 chr15 32283269 32283615 -53412139 - L1MA9 LINE L1 -148 6164 5804 225 65 0 0 chr15 32283615 32283646 -53412108 + (TG)n Simple_repeat Simple_repeat 2 32 0 8847 194 53 99 chr15 32283646 32283693 -53412061 - L1MA9 LINE L1 -508 5804 5756 1495 53 0 80 chr15 32283693 32283919 -53411835 - AluY SINE Alu -5 306 99 8847 194 53 99 chr15 32283919 32285387 -53410367 - L1MA9 LINE L1 -556 5756 4222 1090 189 5 24 chr15 32285387 32285593 -53410161 - AluJb SINE Alu -20 292 91 8847 194 53 99 chr15 32285593 32286087 -53409667 - L1MA9 LINE L1 -2090 4222 3707 1388 174 44 34 chr15 32286087 32286381 -53409373 - AluJb SINE Alu -15 297 1 8847 194 53 99 chr15 32286381 32287527 -53408227 - L1MA9 LINE L1 -2605 3707 2651 536 324 92 36 chr15 32287626 32287942 -53407812 - L1ME4a LINE L1 -122 5999 5643 1489 214 93 38 chr15 32287942 32288195 -53407559 - MLT1C LTR MaLR 0 467 178 2372 86 3 0 chr15 32288195 32288499 -53407255 - AluSg SINE Alu -5 305 1 1489 214 93 38 chr15 32288499 32288688 -53407066 - MLT1C LTR MaLR -289 178 1 536 324 92 36 chr15 32288688 32288871 -53406883 - L1ME4a LINE L1 -478 5643 5472 387 292 137 31 chr15 32289070 32289565 -53406189 - L1ME4a LINE L1 -1127 5019 4458 232 349 140 36 chr15 32289575 32290137 -53405617 - L2 LINE L2 -1 3271 2652 234 258 41 52 chr15 32290209 32290306 -53405448 - L2 LINE L2 -1372 1942 1847 537 315 98 56 chr15 32290366 32291048 -53404706 - L1ME4a LINE L1 -1774 4372 3662 317 274 118 10 chr15 32291182 32291284 -53404470 + MIR3 SINE MIR 81 193 -15 590 234 0 8 chr15 32291581 32291705 -53404049 + MIR SINE MIR 21 143 -65 250 301 51 68 chr15 32291826 32292002 -53403752 - MIR SINE MIR -70 192 20 814 336 16 8 chr15 32293668 32293924 -53401830 - MIR SINE MIR -3 259 2 236 250 0 0 chr15 32294175 32294251 -53401503 + (TA)n Simple_repeat Simple_repeat 1 76 0 737 167 23 15 chr15 32294252 32294384 -53401370 - AluSq/x SINE Alu -178 134 2 22 35 0 0 chr15 32294384 32294413 -53401341 + AT_rich Low_complexity Low_complexity 1 29 0 33 73 0 0 chr15 32295429 32295497 -53400257 + AT_rich Low_complexity Low_complexity 1 68 0 821 317 33 64 chr15 32296035 32296489 -53399265 - LTR16B LTR ERVL -23 441 2 2460 64 0 0 chr15 32296514 32296812 -53398942 - AluY SINE Alu -13 298 1 318 50 0 0 chr15 32297075 32297115 -53398639 + (TG)n Simple_repeat Simple_repeat 2 41 0 1599 145 70 36 chr15 32298224 32298583 -53397171 + THE1C LTR MaLR 3 373 -2 1225 234 87 19 chr15 32299017 32299338 -53396416 - MER2 DNA MER2_type 0 344 2 1777 151 10 7 chr15 32300697 32300996 -53394758 - AluSx SINE Alu -11 301 2 21 0 0 0 chr15 32302542 32302563 -53393191 + AT_rich Low_complexity Low_complexity 1 21 0 506 331 56 32 chr15 32302620 32302871 -53392883 - MIR SINE MIR -4 258 2 320 321 172 14 chr15 32302976 32303191 -53392563 + L3 LINE CR1 378 626 -951 1451 192 34 6 chr15 32303207 32303530 -53392224 - L1MA4 LINE L1 -11 6289 5958 659 95 0 0 chr15 32303530 32303625 -53392129 - L1 LINE L1 -1537 4609 4515 427 336 21 0 chr15 32303649 32303792 -53391962 + L3 LINE CR1 663 808 -769 354 293 0 0 chr15 32303796 32303902 -53391852 - MLT1I LTR MaLR 0 409 304 243 243 68 14 chr15 32303948 32304022 -53391732 - MLT1J1 LTR MaLR -110 336 259 613 336 128 30 chr15 32304025 32304361 -53391393 + L3 LINE CR1 1209 1577 0 888 268 85 18 chr15 32304374 32304779 -53390975 - MLT1H LTR MaLR 0 549 10 382 343 29 0 chr15 32306546 32306683 -53389071 + MIR SINE MIR 28 168 -94 428 287 11 0 chr15 32306800 32306894 -53388860 + MER81 DNA DNA 20 114 0 1490 62 1 2 chr15 32307013 32307222 -53388532 + L1P LINE L1 4761 4967 -1179 2032 96 34 14 chr15 32307619 32307912 -53387842 - AluY SINE Alu -12 299 1 1573 173 39 45 chr15 32307931 32308243 -53387511 - AluJb SINE Alu -2 310 1 300 322 63 40 chr15 32309926 32310100 -53385654 + MIR SINE MIR 83 260 -2 814 212 0 30 chr15 32310380 32310545 -53385209 - AluJb SINE Alu -5 307 148 38 0 0 0 chr15 32310758 32310796 -53384958 + AT_rich Low_complexity Low_complexity 1 38 0 1831 139 21 11 chr15 32310962 32311249 -53384505 + AluSx SINE Alu 1 290 -22 239 315 7 68 chr15 32311752 32311898 -53383856 - L3b LINE CR1 -124 1459 1323 2082 184 127 22 chr15 32312307 32312764 -53382990 + MLT1D LTR MaLR 1 505 0 202 313 0 47 chr15 32312952 32313016 -53382738 - L2 LINE L2 -2 3270 3210 704 262 39 0 chr15 32313213 32313442 -53382312 + L1MA9 LINE L1 6038 6275 -37 203 77 0 51 chr15 32313771 32313810 -53381944 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 557 261 138 11 chr15 32314649 32314837 -53380917 - MIR SINE MIR -19 243 32 198 275 0 0 chr15 32315094 32315163 -53380591 + CT-rich Low_complexity Low_complexity 2 70 0 373 219 107 58 chr15 32315163 32315368 -53380386 - L1MC/D LINE L1 -2338 5470 5256 24 67 0 0 chr15 32315678 32315723 -53380031 + AT_rich Low_complexity Low_complexity 1 45 0 873 236 76 53 chr15 32315810 32316514 -53379240 + L1ME LINE L1 4141 4828 -1336 2573 45 3 0 chr15 32316514 32316824 -53378930 + AluY SINE Alu 1 311 0 873 236 76 53 chr15 32316824 32317337 -53378417 + L1ME LINE L1 4828 5583 -581 417 305 46 101 chr15 32318823 32319387 -53376367 + L2 LINE L2 2763 3310 -3 255 207 46 46 chr15 32320179 32320266 -53375488 - LTR33 LTR ERVL 0 521 435 579 285 14 42 chr15 32320303 32320517 -53375237 - L1ME2 LINE L1 -22 6142 5935 7004 112 8 3 chr15 32320518 32321693 -53374061 + L1MA3 LINE L1 5115 6295 -10 714 237 136 4 chr15 32321702 32321930 -53373824 - L1ME2 LINE L1 -217 5945 5688 522 0 0 0 chr15 32321997 32322055 -53373699 + (TA)n Simple_repeat Simple_repeat 2 59 0 3768 274 45 22 chr15 32322072 32323552 -53372202 - L1MC/D LINE L1 -1038 5108 3595 1680 40 10 0 chr15 32324802 32325004 -53370750 - AluY SINE Alu -8 303 100 229 146 36 36 chr15 32325012 32325067 -53370687 + MER5C DNA MER1_type 70 124 -200 23 33 0 0 chr15 32327294 32327324 -53368430 + AT_rich Low_complexity Low_complexity 1 30 0 314 302 101 38 chr15 32328530 32328689 -53367065 + L1M4b LINE L1 1373 1541 -5318 295 305 80 52 chr15 32328721 32329295 -53366459 + L1M4b LINE L1 1736 2325 -4813 7432 197 28 7 chr15 32329302 32330743 -53365011 - L1PA16 LINE L1 -6 6160 4638 230 20 41 41 chr15 32330743 32330792 -53364962 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 7432 197 28 7 chr15 32330792 32331946 -53363808 - L1PA16 LINE L1 -1528 4638 3510 295 305 79 6 chr15 32331976 32332140 -53363614 + L1M4b LINE L1 2387 2562 -4576 339 228 76 44 chr15 32332463 32332621 -53363133 - MER113 DNA MER1_type? -340 181 19 233 281 0 0 chr15 32332975 32333032 -53362722 - L2 LINE L2 -3 3310 3254 22 0 0 0 chr15 32333539 32333561 -53362193 + AT_rich Low_complexity Low_complexity 1 22 0 11131 27 1 1 chr15 32333561 32335657 -53360097 - L1PA4 LINE L1 -3 6152 4058 1799 116 4 0 chr15 32336148 32336398 -53359356 - AluSx SINE Alu -19 293 43 403 346 114 38 chr15 32336494 32337091 -53358663 + L2 LINE L2 2532 3224 -89 1869 128 3 28 chr15 32337091 32337410 -53358344 - AluSq SINE Alu 0 312 1 403 346 114 38 chr15 32337410 32337495 -53358259 + L2 LINE L2 3224 3301 -12 37 62 0 0 chr15 32337673 32337738 -53358016 + AT_rich Low_complexity Low_complexity 1 65 0 297 230 168 9 chr15 32337960 32338073 -53357681 - MIR SINE MIR -1 261 131 22 35 0 0 chr15 32338658 32338687 -53357067 + AT_rich Low_complexity Low_complexity 1 29 0 226 257 177 26 chr15 32339423 32339536 -53356218 - MIR SINE MIR -88 174 45 259 281 148 0 chr15 32339789 32339985 -53355769 - L1MC4a LINE L1 -1883 5925 5701 6965 52 42 3 chr15 32340356 32341431 -53354323 - L1PA7 LINE L1 -13 6141 5055 222 62 0 0 chr15 32342191 32342223 -53353531 + (CA)n Simple_repeat Simple_repeat 1 32 0 380 331 278 6 chr15 32343237 32343557 -53352197 - L2 LINE L2 -384 2930 2524 22 0 0 0 chr15 32343748 32343770 -53351984 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr15 32344119 32344142 -53351612 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr15 32345163 32345188 -53350566 + AT_rich Low_complexity Low_complexity 1 25 0 348 321 79 42 chr15 32345447 32345712 -53350042 + L1MEd LINE L1 74 348 -5771 1304 271 70 50 chr15 32345728 32346269 -53349485 + L1M4 LINE L1 3593 4121 -2025 710 32 0 21 chr15 32346269 32346364 -53349390 + L1PA4 LINE L1 6063 6155 0 1304 271 70 50 chr15 32346364 32346486 -53349268 + L1M4 LINE L1 4121 4275 -1871 2035 101 49 0 chr15 32346486 32346773 -53348981 + AluSx SINE Alu 1 301 -11 1304 271 70 50 chr15 32346773 32346831 -53348923 + L1M4 LINE L1 4275 4330 -1816 1077 175 5 0 chr15 32346981 32347175 -53348579 + L1P5 LINE L1 3 197 -6666 3322 107 2 4 chr15 32347176 32348184 -53347570 + L1P5 LINE L1 634 1796 -5067 14127 208 16 12 chr15 32348304 32352397 -53343357 + L1P5 LINE L1 2388 6504 -363 399 41 0 0 chr15 32353934 32353983 -53341771 + (ATG)n Simple_repeat Simple_repeat 2 50 0 890 221 94 85 chr15 32353991 32354298 -53341456 + MSTB1 LTR MaLR 9 318 -114 606 289 17 12 chr15 32354594 32354767 -53340987 + MIR SINE MIR 12 185 -77 2070 169 37 27 chr15 32354767 32355184 -53340570 - MSTB LTR MaLR 0 402 1 255 260 52 0 chr15 32355185 32355262 -53340492 + MIR SINE MIR 182 262 0 303 267 198 10 chr15 32355285 32355386 -53340368 - L2 LINE L2 0 3313 3194 2085 169 37 27 chr15 32405550 32405967 -53289787 - MSTB LTR MaLR 0 402 1 250 260 52 0 chr15 32405968 32406045 -53289709 + MIR SINE MIR 182 262 0 473 270 67 113 chr15 32406068 32406368 -53289386 - L2 LINE L2 0 3313 3028 878 257 16 23 chr15 32407012 32407319 -53288435 - AluJb SINE Alu -2 310 6 641 244 23 60 chr15 32407941 32408158 -53287596 + MER63A DNA MER1_type 2 210 0 356 192 0 0 chr15 32409718 32409796 -53285958 + L1MA8 LINE L1 6209 6286 -5 208 388 26 9 chr15 32412129 32412245 -53283509 + L2 LINE L2 2606 2723 -591 268 293 50 66 chr15 32412504 32412685 -53283069 + MIR3 SINE MIR 8 185 -23 211 364 27 32 chr15 32414960 32415147 -53280607 - L2 LINE L2 -260 3012 2827 938 252 78 90 chr15 32415377 32415415 -53280339 + HsTC2a DNA Tc2 4 41 -1859 8118 26 5 1 chr15 32415415 32417158 -53278596 + L1PA3 LINE L1 4405 6153 -2 938 252 78 90 chr15 32417158 32417785 -53277969 + HsTC2a DNA Tc2 41 661 -83 3336 151 39 0 chr15 32417974 32418569 -53277185 + L1P LINE L1 4277 4894 -1252 * 7190 172 18 19 chr15 32418537 32421701 -53274053 + L1MA3 LINE L1 3166 6305 0 25 0 0 0 chr15 32422164 32422189 -53273565 + AT_rich Low_complexity Low_complexity 1 25 0 4896 158 12 2 chr15 32422394 32423252 -53272502 - L1P LINE L1 -1778 4368 3503 2883 221 77 29 chr15 32423253 32424571 -53271183 - MER52A LTR ERV1 0 1755 235 9955 167 21 11 chr15 32424571 32426245 -53269509 - L1M1 LINE L1 -5862 1703 14 3976 183 55 11 chr15 32426315 32427169 -53268585 - L1MA8 LINE L1 -24 6267 5376 775 144 72 0 chr15 32427534 32427687 -53268067 + L1MA7 LINE L1 6122 6285 -6 612 248 115 32 chr15 32428208 32428426 -53267328 + MIR SINE MIR 22 257 -5 416 319 98 49 chr15 32431007 32431436 -53264318 - L1MC4a LINE L1 -1755 6053 5604 2149 73 7 0 chr15 32432638 32432913 -53262841 + AluY SINE Alu 35 311 0 21 0 0 0 chr15 32433482 32433503 -53262251 + AT_rich Low_complexity Low_complexity 1 21 0 457 262 24 8 chr15 32434373 32434499 -53261255 + MIR3 SINE MIR 81 208 0 2365 84 3 0 chr15 32435110 32435406 -53260348 - AluSc SINE Alu -12 297 1 279 377 115 6 chr15 32435451 32435634 -53260120 + MIR SINE MIR 36 238 -24 22 56 0 0 chr15 32435652 32435688 -53260066 + AT_rich Low_complexity Low_complexity 1 36 0 247 326 14 72 chr15 32435696 32435834 -53259920 + L2 LINE L2 3142 3271 -1 462 254 51 37 chr15 32435877 32436046 -53259708 - MER5B DNA MER1_type 0 178 24 1699 187 0 7 chr15 32436481 32436781 -53258973 - AluJo SINE Alu -10 302 5 455 323 15 8 chr15 32437930 32438060 -53257694 - L2 LINE L2 0 3313 3183 381 244 60 65 chr15 32438553 32438721 -53257033 + MIR SINE MIR 46 212 -50 258 324 65 9 chr15 32438981 32439089 -53256665 + MIR SINE MIR 23 136 -126 275 305 78 43 chr15 32439105 32439475 -53256279 - L1M4 LINE L1 -2412 3734 3352 333 282 70 6 chr15 32439583 32439739 -53256015 - L1M4 LINE L1 -2949 3197 3032 4161 169 13 3 chr15 32440004 32440763 -53254991 - L1P LINE L1 -1311 4835 4069 1628 81 22 0 chr15 32442413 32442636 -53253118 + L1PA11 LINE L1 5939 6166 -8 26 30 0 0 chr15 32443908 32443941 -53251813 + AT_rich Low_complexity Low_complexity 1 33 0 186 284 95 42 chr15 32445146 32445241 -53250513 - L2 LINE L2 -1 3271 3172 2419 83 0 6 chr15 32446461 32446773 -53248981 - AluY SINE Alu -1 310 1 550 314 67 27 chr15 32446949 32447172 -53248582 + MIR SINE MIR 24 255 -7 25 31 0 0 chr15 32448046 32448078 -53247676 + AT_rich Low_complexity Low_complexity 1 32 0 312 316 148 32 chr15 32448452 32448762 -53246992 - L3 LINE CR1 -11 1566 1221 22 0 0 0 chr15 32449337 32449359 -53246395 + AT_rich Low_complexity Low_complexity 1 22 0 215 308 103 20 chr15 32450312 32450458 -53245296 - MIR3 SINE MIR -31 177 20 3419 130 54 129 chr15 32450686 32451533 -53244221 - LTR1 LTR ERV1 0 785 2 215 208 21 0 chr15 32451824 32451872 -53243882 + MIR SINE MIR 106 154 -108 665 249 8 10 chr15 32451874 32452122 -53243632 - MER90 LTR ERV1 0 614 311 1227 198 86 0 chr15 32452122 32452365 -53243389 + Tigger7 DNA MER2_type 1 264 -469 427 240 10 31 chr15 32452402 32452498 -53243256 + Tigger7 DNA MER2_type 2389 2482 -5 895 300 36 4 chr15 32452510 32452790 -53242964 - MER90 LTR ERV1 -309 305 17 2036 126 0 17 chr15 32454090 32454384 -53241370 - AluSx SINE Alu -23 289 1 384 291 50 28 chr15 32454453 32454594 -53241160 - MIR SINE MIR -42 220 77 1638 234 23 3 chr15 32454596 32454947 -53240807 - MLT1A1 LTR MaLR -2 363 6 2151 129 36 33 chr15 32455004 32455367 -53240387 - THE1B LTR MaLR 0 364 1 228 303 15 0 chr15 32455784 32455850 -53239904 - L2 LINE L2 -18 3295 3229 357 181 143 9 chr15 32455945 32456050 -53239704 - MER63 DNA MER1_type -318 742 624 324 232 11 42 chr15 32456245 32456340 -53239414 - L1MC4 LINE L1 -1337 6705 6614 299 228 35 0 chr15 32456365 32456479 -53239275 + (TA)n Simple_repeat Simple_repeat 1 118 0 2161 71 4 7 chr15 32457229 32457558 -53238196 - AluY SINE Alu 0 328 1 226 215 31 15 chr15 32460785 32460850 -53234904 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 29 0 0 0 chr15 32460898 32460927 -53234827 + AT_rich Low_complexity Low_complexity 1 29 0 1648 215 28 85 chr15 32462357 32462957 -53232797 - L1ME1 LINE L1 -4 6231 5666 198 0 0 0 chr15 32462993 32463015 -53232739 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1073 218 31 8 chr15 32463035 32463296 -53232458 - L1ME1 LINE L1 -1994 4221 3955 367 349 62 25 chr15 32463324 32463565 -53232189 - L1ME1 LINE L1 -4727 1488 1239 1747 109 69 0 chr15 32463709 32463983 -53231771 - L1P4 LINE L1 -557 5609 5317 1057 160 0 36 chr15 32463986 32464180 -53231574 - L1PA11 LINE L1 0 6174 5988 3025 260 35 52 chr15 32464180 32465108 -53230646 - L1ME1 LINE L1 -5198 1198 293 404 39 0 0 chr15 32465108 32465159 -53230595 - L1PA3 LINE L1 -3 6152 6102 3025 260 35 52 chr15 32465159 32465414 -53230340 - L1ME1 LINE L1 -6103 293 35 23 54 0 0 chr15 32465527 32465564 -53230190 + AT_rich Low_complexity Low_complexity 1 37 0 428 245 117 61 chr15 32465565 32465761 -53229993 + L1ME1 LINE L1 395 601 -5795 329 255 21 21 chr15 32466703 32466797 -53228957 - MIR3 SINE MIR -7 201 108 22 35 0 0 chr15 32467055 32467084 -53228670 + AT_rich Low_complexity Low_complexity 1 29 0 192 304 14 29 chr15 32467906 32467975 -53227779 - L2 LINE L2 0 3272 3205 202 307 125 0 chr15 32468036 32468124 -53227630 + MIR SINE MIR 45 143 -65 180 0 0 0 chr15 32468614 32468634 -53227120 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 229 220 0 0 chr15 32470591 32470641 -53225113 + L1ME1 LINE L1 2037 2086 -4310 251 180 20 0 chr15 32470768 32470818 -53224936 - Alu SINE Alu -250 51 1 753 216 11 5 chr15 32470873 32471063 -53224691 + L1ME1 LINE L1 2186 2376 -4020 480 207 17 17 chr15 32471138 32471254 -53224500 + L1ME1 LINE L1 5418 5533 -702 232 287 53 57 chr15 32471278 32471525 -53224229 - L1MEc LINE L1 -4225 2171 1926 * 1361 247 117 70 chr15 32471521 32472165 -53223589 + L1ME1 LINE L1 5557 6230 -5 400 176 14 0 chr15 32473756 32473830 -53221924 + MER116 DNA Mariner 6 80 0 457 279 26 64 chr15 32475068 32475301 -53220453 + L1MC4 LINE L1 5600 5823 -1985 198 71 0 0 chr15 32475588 32475616 -53220138 + (TC)n Simple_repeat Simple_repeat 1 28 0 327 233 58 10 chr15 32475636 32475739 -53220015 - L1MC4 LINE L1 -1321 6721 6614 327 277 0 43 chr15 32475665 32475759 -53219995 + L1MC4 LINE L1 6614 6703 -1339 315 167 0 17 chr15 32475753 32475813 -53219941 - L1MC4 LINE L1 -1339 6703 6645 * 949 193 0 6 chr15 32475819 32475990 -53219764 - AluSg/x SINE Alu -28 284 115 1623 173 14 17 chr15 32478294 32478589 -53217165 + AluJo SINE Alu 3 296 -16 1996 103 0 61 chr15 32479116 32479446 -53216308 - AluY SINE Alu -1 310 1 515 256 83 42 chr15 32480034 32480202 -53215552 - MIR SINE MIR -38 224 50 623 259 45 8 chr15 32480206 32480468 -53215286 - L1MB7 LINE L1 -212 5968 5697 4776 183 107 2 chr15 32480669 32481592 -53214162 - LTR28 LTR ERV1 0 1020 1 216 318 0 0 chr15 32481613 32481698 -53214056 + (TA)n Simple_repeat Simple_repeat 2 86 0 315 122 0 0 chr15 32482045 32482094 -53213660 + (TG)n Simple_repeat Simple_repeat 2 50 0 183 315 62 62 chr15 32482106 32482236 -53213518 - MIR3 SINE MIR -37 171 42 196 264 27 82 chr15 32482375 32482485 -53213269 - MIR SINE MIR -37 225 122 37 62 0 0 chr15 32483104 32483169 -53212585 + AT_rich Low_complexity Low_complexity 1 65 0 23 0 0 0 chr15 32484077 32484100 -53211654 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr15 32484157 32484203 -53211551 + AT_rich Low_complexity Low_complexity 1 46 0 2048 135 0 10 chr15 32484226 32484530 -53211224 - AluSx SINE Alu -9 303 3 301 273 13 0 chr15 32486016 32486093 -53209661 - MLT1J LTR MaLR -325 186 109 324 336 38 0 chr15 32487895 32488026 -53207728 - LTR67 LTR ERVL 0 557 422 485 220 57 21 chr15 32488620 32488761 -53206993 + L1MC3 LINE L1 7640 7785 0 388 234 73 48 chr15 32489950 32490074 -53205680 - MIR SINE MIR -34 228 102 1519 258 107 43 chr15 32490085 32490786 -53204968 - MER20B DNA MER1_type -1 782 37 455 257 66 7 chr15 32490918 32491054 -53204700 - Charlie4 DNA MER1_type 0 1961 1818 469 190 149 0 chr15 32491060 32491181 -53204573 - Charlie4 DNA MER1_type -1708 253 115 277 183 52 0 chr15 32491229 32491382 -53204372 + (TA)n Simple_repeat Simple_repeat 1 161 0 1270 219 39 42 chr15 32492462 32492745 -53203009 - AluJo SINE Alu -30 282 1 428 263 0 0 chr15 32494872 32494952 -53200802 + MER5A DNA MER1_type 106 185 -4 205 231 246 0 chr15 32494956 32495021 -53200733 - MIR SINE MIR -62 146 66 998 194 22 0 chr15 32495674 32495854 -53199900 + MER5A DNA MER1_type 6 189 0 259 313 94 62 chr15 32495855 32495983 -53199771 - MIR3 SINE MIR -63 145 14 6815 69 28 9 chr15 32496381 32497927 -53197827 - L1PA7 LINE L1 0 6154 4593 254 108 0 0 chr15 32497927 32497964 -53197790 + L1PA7 LINE L1 4557 4593 -1553 434 356 19 6 chr15 32498145 32498305 -53197449 - L3 LINE CR1 -27 1550 1389 1628 117 19 30 chr15 32498736 32499002 -53196752 - MER4A LTR ERV1 -29 635 373 767 185 58 58 chr15 32499136 32499341 -53196413 - MER58A DNA MER1_type 0 224 20 22 0 0 0 chr15 32499490 32499512 -53196242 + AT_rich Low_complexity Low_complexity 1 22 0 301 279 0 0 chr15 32499540 32499626 -53196128 + MER67D LTR ERV1 3 88 -426 646 102 0 0 chr15 32499658 32499746 -53196008 + MER67D LTR ERV1 63 150 -364 432 254 82 0 chr15 32502048 32502170 -53193584 - L2 LINE L2 0 3313 3182 1815 179 14 24 chr15 32502223 32502592 -53193162 - MLT1A1 LTR MaLR 0 365 1 5413 157 22 12 chr15 32503466 32504978 -53190776 - L1MA8 LINE L1 0 6291 4767 391 254 70 9 chr15 32505628 32505742 -53190012 - MIR3 SINE MIR -3 205 85 246 148 0 0 chr15 32505834 32505888 -53189866 + (TA)n Simple_repeat Simple_repeat 1 54 0 189 107 0 0 chr15 32505883 32505911 -53189843 + (CA)n Simple_repeat Simple_repeat 2 29 0 * 201 325 12 0 chr15 32507255 32507335 -53188419 + (TG)n Simple_repeat Simple_repeat 2 82 0 3422 151 6 32 chr15 32508881 32509539 -53186215 + L1MA8 LINE L1 5650 6290 -1 184 206 87 130 chr15 32509584 32509676 -53186078 + MIR SINE MIR 5 92 -170 265 361 44 13 chr15 32510124 32510282 -53185472 + L2 LINE L2 2624 2786 -528 555 348 138 33 chr15 32510346 32511171 -53184583 + L2 LINE L2 1817 2728 -586 261 275 43 14 chr15 32511704 32511773 -53183981 + L2 LINE L2 3193 3263 -9 5285 169 18 33 chr15 32512698 32513917 -53181837 - L1MA8 LINE L1 -1 6290 5088 30 59 0 0 chr15 32514427 32514478 -53181276 + AT_rich Low_complexity Low_complexity 1 51 0 188 306 28 14 chr15 32518491 32518563 -53177191 + MIR SINE MIR 77 149 -59 419 103 0 0 chr15 32519698 32519756 -53175998 + Alu SINE Alu 235 292 -20 212 320 143 40 chr15 32519770 32519945 -53175809 - L2 LINE L2 -1299 2015 1823 1467 143 27 0 chr15 32519952 32520176 -53175578 - MER30 DNA MER1_type 0 230 1 404 269 25 70 chr15 32520178 32520420 -53175334 + L1ME4a LINE L1 5755 5985 -136 2020 94 0 0 chr15 32520509 32520797 -53174957 - L1PA6 LINE L1 -2 6152 5865 214 271 14 14 chr15 32521724 32521794 -53173960 + GA-rich Low_complexity Low_complexity 2 71 0 525 250 120 26 chr15 32521903 32522095 -53173659 - MER63A DNA MER1_type 0 210 1 1455 219 133 27 chr15 32522374 32522625 -53173129 - MER69 DNA AcHobo -202 2324 2101 1647 179 58 128 chr15 32522625 32523178 -53172576 - MER67D LTR ERV1 0 514 1 1455 219 133 27 chr15 32523178 32523528 -53172226 - MER69 DNA AcHobo -425 2101 1659 440 229 107 15 chr15 32523525 32523656 -53172098 - MER69 DNA AcHobo -1083 143 1 * 1204 225 51 29 chr15 32523829 32524144 -53171610 + MER58B DNA MER1_type 20 341 0 180 0 0 0 chr15 32524177 32524197 -53171557 + (T)n Simple_repeat Simple_repeat 1 20 0 36 31 0 31 chr15 32524210 32524248 -53171506 + AT_rich Low_complexity Low_complexity 1 38 -25 1472 149 16 0 chr15 32524248 32524503 -53171251 - L1MA4 LINE L1 -14 6286 6028 36 31 0 31 chr15 32524503 32524529 -53171225 + AT_rich Low_complexity Low_complexity 38 63 0 228 148 0 93 chr15 32525031 32525085 -53170669 - MLT1J LTR MaLR -85 426 378 327 303 79 12 chr15 32525405 32525570 -53170184 - MLT1J LTR MaLR -335 176 1 294 317 0 48 chr15 32526260 32526364 -53169390 - MIR3 SINE MIR -11 197 99 400 283 138 6 chr15 32526927 32527086 -53168668 + MIR SINE MIR 3 182 -80 324 48 0 0 chr15 32527403 32527445 -53168309 + (TG)n Simple_repeat Simple_repeat 1 42 0 219 267 0 17 chr15 32527720 32527780 -53167974 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 1101 281 107 42 chr15 32530004 32530481 -53165273 + L2 LINE L2 1331 1838 -1476 1469 222 132 66 chr15 32530513 32531042 -53164712 - L1ME1 LINE L1 -21 6145 5653 186 43 0 0 chr15 32531042 32531065 -53164689 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1469 222 132 66 chr15 32531065 32531257 -53164497 - L1ME1 LINE L1 -513 5653 5475 979 144 22 0 chr15 32531257 32531437 -53164317 - L1MA8 LINE L1 -5 6286 6103 1469 222 132 66 chr15 32531437 32532130 -53163624 - L1ME1 LINE L1 -691 5475 4532 1478 286 127 23 chr15 32532331 32532936 -53162818 + L2 LINE L2 2132 2799 -515 511 232 221 6 chr15 32533017 32533198 -53162556 + L2 LINE L2 3094 3313 0 373 320 49 25 chr15 32533743 32533946 -53161808 - MIR SINE MIR -53 209 2 2272 91 0 3 chr15 32533958 32534265 -53161489 - AluSx SINE Alu -6 306 1 365 119 0 0 chr15 32534301 32534360 -53161394 + L1PA16 LINE L1 5418 5476 -687 5991 155 10 4 chr15 32534370 32534738 -53161016 - L1PB1 LINE L1 -2 6149 5785 216 0 0 0 chr15 32534738 32534762 -53160992 + (TA)n Simple_repeat Simple_repeat 2 25 0 5991 155 10 4 chr15 32534762 32536019 -53159735 - L1PB1 LINE L1 -366 5785 4518 3937 140 56 1 chr15 32536019 32536682 -53159072 + L1PA16 LINE L1 5456 6157 -9 2132 70 0 0 chr15 32536831 32537090 -53158664 + AluY SINE Alu 39 297 -14 414 318 23 28 chr15 32537174 32537388 -53158366 - L1M4 LINE L1 -748 5398 5186 838 224 33 38 chr15 32537466 32537676 -53158078 + AluJo SINE Alu 86 294 -18 810 288 97 46 chr15 32537979 32538330 -53157424 + L2 LINE L2 2431 2799 -515 511 232 221 6 chr15 32538411 32538592 -53157162 + L2 LINE L2 3094 3313 0 373 320 49 25 chr15 32539137 32539340 -53156414 - MIR SINE MIR -53 209 2 1883 108 0 4 chr15 32539352 32539629 -53156125 - AluSx SINE Alu -6 306 31 244 125 0 89 chr15 32539706 32539762 -53155992 + L1P4 LINE L1 5429 5479 -682 558 182 88 0 chr15 32539762 32539943 -53155811 - L1PB1 LINE L1 -2 6149 5953 24 53 0 0 chr15 32540214 32540252 -53155502 + AT_rich Low_complexity Low_complexity 1 38 0 2068 73 0 4 chr15 32540387 32540647 -53155107 + AluY SINE Alu 39 297 -14 414 318 23 28 chr15 32540731 32540945 -53154809 - L1M4 LINE L1 -748 5398 5186 838 224 33 38 chr15 32541023 32541233 -53154521 + AluJo SINE Alu 86 294 -18 209 0 97 0 chr15 32541428 32541459 -53154295 + T-rich Low_complexity Low_complexity 3 36 0 2171 95 10 0 chr15 32541794 32542088 -53153666 - AluSx SINE Alu -15 297 1 1729 194 25 73 chr15 32542315 32542824 -53152930 - MER31A LTR ERV1 0 485 1 1098 301 77 20 chr15 32543322 32543761 -53151993 + L2 LINE L2 2398 2861 -453 200 169 119 34 chr15 32543855 32543914 -53151840 + L2 LINE L2 3250 3313 0 254 307 30 10 chr15 32544034 32544135 -53151619 + MLT1J2 LTR MaLR 78 180 -270 340 243 19 58 chr15 32544219 32544322 -53151432 + MLT1I LTR MaLR 323 407 -2 229 342 62 26 chr15 32544362 32544555 -53151199 + L2 LINE L2 2699 2898 -416 350 344 39 0 chr15 32544947 32545075 -53150679 + MIR SINE MIR 1 133 -129 315 266 13 0 chr15 32545493 32545572 -53150182 - L2 LINE L2 -4 3309 3230 22 0 0 0 chr15 32545582 32545604 -53150150 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr15 32546052 32546073 -53149681 + AT_rich Low_complexity Low_complexity 1 21 0 238 229 0 0 chr15 32546822 32546870 -53148884 - L1ME LINE L1 -386 5735 5688 330 273 94 31 chr15 32546873 32547001 -53148753 + MLT1J LTR MaLR 181 316 -195 61 58 0 0 chr15 32547711 32547814 -53147940 + AT_rich Low_complexity Low_complexity 1 103 0 313 322 150 11 chr15 32548103 32548283 -53147471 + L1ME3A LINE L1 3639 3843 -2303 318 313 85 20 chr15 32548359 32548605 -53147149 + L1ME3A LINE L1 5620 5881 -290 2196 76 3 13 chr15 32548647 32548949 -53146805 - AluY SINE Alu -12 299 1 229 400 33 0 chr15 32550318 32550408 -53145346 + L2 LINE L2 3203 3295 -18 288 168 30 0 chr15 32550913 32551014 -53144740 + (TA)n Simple_repeat Simple_repeat 1 104 0 356 266 77 65 chr15 32551740 32551909 -53143845 - L2 LINE L2 -3 3310 3140 180 0 0 0 chr15 32552084 32552104 -53143650 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 615 283 80 12 chr15 32552262 32552513 -53143241 + L2 LINE L2 1910 2177 -1137 513 308 25 43 chr15 32552695 32552915 -53142839 + MIR SINE MIR 2 213 -49 2439 168 27 0 chr15 32553479 32553883 -53141871 + MSTC LTR MaLR 1 415 -13 2089 110 0 3 chr15 32554025 32554317 -53141437 - AluSx SINE Alu -21 291 1 25 31 0 0 chr15 32554339 32554371 -53141383 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr15 32554380 32554423 -53141331 + AT_rich Low_complexity Low_complexity 1 43 0 427 284 55 46 chr15 32554585 32555064 -53140690 - L1ME4a LINE L1 -157 5964 5481 1244 246 13 43 chr15 32555064 32555438 -53140316 - MLT1A1 LTR MaLR 0 365 3 427 284 55 46 chr15 32555438 32555559 -53140195 - L1ME4a LINE L1 -640 5481 5363 27 62 0 0 chr15 32556131 32556179 -53139575 + AT_rich Low_complexity Low_complexity 1 48 0 219 242 0 16 chr15 32556507 32556569 -53139185 + (TATG)n Simple_repeat Simple_repeat 3 63 0 10994 194 39 25 chr15 32556702 32559270 -53136484 - L1 LINE L1 -1215 5633 3030 1768 250 70 68 chr15 32559268 32560292 -53135462 - L1 LINE L1 -4230 2619 1594 * 477 346 76 39 chr15 32560786 32561220 -53134534 - L1 LINE L1 -5830 949 500 537 212 9 18 chr15 32561279 32561392 -53134362 + MER5A DNA MER1_type 54 165 -24 2121 129 0 0 chr15 32561762 32562065 -53133689 - AluSq SINE Alu -8 305 3 416 320 103 5 chr15 32562162 32562365 -53133389 - L2 LINE L2 -463 2851 2629 814 165 0 19 chr15 32564033 32564191 -53131563 - L1MA10 LINE L1 -1 6333 6179 201 74 0 0 chr15 32564407 32564434 -53131320 + (A)n Simple_repeat Simple_repeat 1 27 0 21 57 0 0 chr15 32565736 32565771 -53129983 + AT_rich Low_complexity Low_complexity 1 35 0 271 379 11 52 chr15 32566089 32566263 -53129491 + L2 LINE L2 3106 3272 0 956 219 20 0 chr15 32566411 32566612 -53129142 + MER3 DNA MER1_type 1 205 -4 270 233 326 12 chr15 32566699 32566785 -53128969 + MER96 DNA MER1_type? 63 175 0 31 88 0 0 chr15 32569468 32569548 -53126206 + AT_rich Low_complexity Low_complexity 1 80 0 1954 149 33 54 chr15 32569549 32569978 -53125776 - L1MA8 LINE L1 -5 6286 5867 2798 129 20 22 chr15 32570391 32570896 -53124858 + L1MA8 LINE L1 5783 6286 -5 275 266 26 18 chr15 32571244 32571357 -53124397 - L1ME3A LINE L1 -228 5942 5829 436 212 0 61 chr15 32571438 32571537 -53124217 + MER3 DNA MER1_type 1 93 -116 25 0 0 0 chr15 32571543 32571568 -53124186 + AT_rich Low_complexity Low_complexity 1 25 0 433 290 84 55 chr15 32571609 32571901 -53123853 - LTR16A LTR ERVL -69 381 59 7357 188 112 22 chr15 32571901 32573511 -53122243 - MER52A LTR ERV1 0 1755 1 433 290 84 55 chr15 32573511 32573567 -53122187 - LTR16A LTR ERVL -391 59 6 601 302 1 42 chr15 32573579 32573866 -53121888 - L1ME3A LINE L1 -337 5825 5547 356 263 0 0 chr15 32574047 32574123 -53121631 + MLT1E1 LTR MaLR 53 128 -465 637 258 24 0 chr15 32574158 32574325 -53121429 + MLT1E1 LTR MaLR 125 295 -359 1037 237 16 16 chr15 32574354 32574607 -53121147 + MLT1E1 LTR MaLR 401 653 -1 23 0 0 0 chr15 32574894 32574917 -53120837 + AT_rich Low_complexity Low_complexity 1 23 0 396 163 62 0 chr15 32575231 32575311 -53120443 - LTR16C LTR ERVL 0 491 407 852 263 40 43 chr15 32575509 32575813 -53119941 + MLT1C LTR MaLR 53 355 -112 605 217 109 59 chr15 32575808 32576051 -53119703 - MLT1G1 LTR MaLR -297 298 1 * 322 217 0 0 chr15 32576057 32576117 -53119637 - MLT1J1 LTR MaLR -384 62 3 1650 194 45 20 chr15 32576198 32576554 -53119200 - MLT1A1 LTR MaLR 0 365 1 381 311 37 70 chr15 32576732 32576973 -53118781 - L3 LINE CR1 -157 1420 1188 27 0 0 0 chr15 32577210 32577237 -53118517 + AT_rich Low_complexity Low_complexity 1 27 0 210 330 57 9 chr15 32577293 32577399 -53118355 - MIR SINE MIR -64 144 34 25 0 0 0 chr15 32577433 32577458 -53118296 + AT_rich Low_complexity Low_complexity 1 25 0 370 319 0 36 chr15 32578253 32578391 -53117363 - MER5A DNA MER1_type -56 133 1 4510 188 34 17 chr15 32578513 32580359 -53115395 - L1MA8 LINE L1 -4 6287 4407 12300 194 34 28 chr15 32580441 32580960 -53114794 + L1MA4A LINE L1 2510 3025 -3278 1448 193 39 35 chr15 32580960 32581271 -53114483 + AluJb SINE Alu 1 312 0 12300 194 34 28 chr15 32581271 32584523 -53111231 + L1MA4A LINE L1 3025 6303 0 203 189 0 0 chr15 32584879 32584916 -53110838 + MIR SINE MIR 118 154 -108 1831 236 10 2 chr15 32584931 32585381 -53110373 - MER89 LTR ERV1 -2 557 5 1529 179 90 75 chr15 32585751 32586216 -53109538 - MER41B LTR ERV1 -23 612 141 188 368 81 29 chr15 32587399 32587573 -53108181 + L2 LINE L2 2127 2309 -1005 247 329 33 46 chr15 32587657 32587809 -53107945 + L2 LINE L2 2699 2848 -466 586 283 21 27 chr15 32587942 32588129 -53107625 + MER5A DNA MER1_type 2 187 -2 400 200 70 0 chr15 32588131 32588231 -53107523 - MER103 DNA DNA -49 117 11 2136 136 0 0 chr15 32588389 32588691 -53107063 - AluSx SINE Alu -10 302 1 28 0 0 0 chr15 32590079 32590107 -53105647 + AT_rich Low_complexity Low_complexity 1 28 0 221 274 49 49 chr15 32591174 32591276 -53104478 + MIR SINE MIR 5 106 -156 186 103 0 0 chr15 32591294 32591323 -53104431 + (CA)n Simple_repeat Simple_repeat 1 29 0 530 261 0 45 chr15 32592420 32592554 -53103200 + MIR3 SINE MIR 76 203 -5 325 331 26 13 chr15 32594032 32594186 -53101568 + MER5A DNA MER1_type 7 162 -27 191 236 109 0 chr15 32594439 32594494 -53101260 + L2 LINE L2 3192 3252 -61 23 33 0 0 chr15 32594620 32594650 -53101104 + AT_rich Low_complexity Low_complexity 1 30 0 5282 255 84 38 chr15 32594761 32597648 -53098106 - L1ME1 LINE L1 -5 6161 3112 535 282 57 61 chr15 32598627 32599152 -53096602 - L1MC5 LINE L1 -67 7894 7372 256 306 116 0 chr15 32599182 32599329 -53096425 - L1MC4 LINE L1 -555 7487 7324 1071 45 0 0 chr15 32599422 32599555 -53096199 - L1PA5 LINE L1 -6 6148 6016 950 18 0 0 chr15 32599555 32599665 -53096089 + L1PA4 LINE L1 5771 5880 -275 361 250 6 81 chr15 32599660 32599820 -53095934 - L1MC5 LINE L1 -783 7178 7031 * 235 200 0 92 chr15 32599890 32599955 -53095799 - L2 LINE L2 -1 3312 3254 543 253 49 12 chr15 32601266 32601428 -53094326 - MIR SINE MIR -37 225 58 796 203 0 0 chr15 32601937 32602090 -53093664 + FRAM SINE Alu 13 165 -11 1634 140 40 20 chr15 32602105 32602405 -53093349 + AluJo SINE Alu 1 306 -6 624 264 47 59 chr15 32603744 32603998 -53091756 - MIR SINE MIR -10 252 2 718 233 79 82 chr15 32604657 32605060 -53090694 - MER39 LTR ERV1 0 707 306 377 300 9 0 chr15 32605086 32605196 -53090558 - MER34 LTR ERV1 -428 114 4 2488 65 3 0 chr15 32606585 32606894 -53088860 + AluY SINE Alu 1 310 -1 1902 158 3 0 chr15 32607404 32607714 -53088040 + AluY SINE Alu 1 311 0 314 280 24 24 chr15 32608301 32608426 -53087328 - L1MC5 LINE L1 -1897 5911 5787 323 217 221 60 chr15 32608563 32608780 -53086974 - L1MC5 LINE L1 -2301 5507 5256 5171 158 33 3 chr15 32608855 32610384 -53085370 - L1PA15 LINE L1 -2 6163 4608 2627 245 62 27 chr15 32610384 32611528 -53084226 - L1ME LINE L1 -584 5582 4392 1112 112 0 0 chr15 32611556 32611708 -53084046 + AluSg/x SINE Alu 149 300 -12 1452 148 89 43 chr15 32611709 32612034 -53083720 - THE1C LTR MaLR -35 340 1 1964 226 74 26 chr15 32612034 32612738 -53083016 - L1ME LINE L1 -1749 4397 3660 2052 121 10 7 chr15 32613849 32614146 -53081608 + AluSx SINE Alu 1 298 -14 443 337 123 62 chr15 32615159 32615742 -53080012 - L2 LINE L2 -4 3268 2658 290 333 44 49 chr15 32616174 32616357 -53079397 + L2 LINE L2 2296 2477 -837 * 461 343 166 24 chr15 32616341 32616720 -53079034 + L2 LINE L2 2881 3313 0 302 222 69 0 chr15 32617202 32617274 -53078480 + L2 LINE L2 3191 3267 -5 758 123 0 0 chr15 32617402 32617542 -53078212 - AluSc SINE Alu 0 304 165 268 235 0 0 chr15 32619629 32619680 -53076074 - MLT1F LTR MaLR 0 542 492 1184 281 37 3 chr15 32619708 32620057 -53075697 - MLT1F LTR MaLR -181 361 1 23 0 0 0 chr15 32620251 32620274 -53075480 + AT_rich Low_complexity Low_complexity 1 23 0 199 187 0 173 chr15 32620422 32620497 -53075257 - MER5A DNA MER1_type 0 189 128 565 247 209 0 chr15 32620520 32620678 -53075076 - MIR SINE MIR -16 246 56 793 218 41 6 chr15 32620944 32621114 -53074640 + MER5A DNA MER1_type 14 189 0 333 273 143 37 chr15 32621326 32621487 -53074267 - L2 LINE L2 -2 3311 3134 899 342 71 42 chr15 32621499 32622345 -53073409 + L2 LINE L2 2316 3193 -120 225 0 0 0 chr15 32622444 32622469 -53073285 + (CA)n Simple_repeat Simple_repeat 2 26 0 292 202 48 19 chr15 32622543 32622647 -53073107 + (TA)n Simple_repeat Simple_repeat 2 108 0 391 205 13 0 chr15 32622649 32622727 -53073027 + MER112 DNA MER1_type 180 258 -2 22 56 0 0 chr15 32622790 32622826 -53072928 + AT_rich Low_complexity Low_complexity 1 36 0 1084 195 72 81 chr15 32625234 32625679 -53070075 - MLT1D LTR MaLR -2 565 57 1240 297 63 41 chr15 32625680 32626171 -53069583 - MLT1E LTR MaLR -89 504 3 496 301 142 18 chr15 32626174 32626400 -53069354 + MIR SINE MIR 3 256 -6 2621 96 3 3 chr15 32626634 32626989 -53068765 + THE1A LTR MaLR 1 355 0 27 73 0 0 chr15 32627115 32627170 -53068584 + AT_rich Low_complexity Low_complexity 1 55 0 533 300 60 48 chr15 32627263 32627683 -53068071 - HAL1b LINE L1 -732 616 343 566 310 130 11 chr15 32627693 32628183 -53067571 + L2 LINE L2 2705 3272 0 413 219 76 0 chr15 32628576 32628681 -53067073 - L1MB7 LINE L1 -79 6105 5993 329 167 0 0 chr15 32628682 32628742 -53067012 + L1MB8 LINE L1 6107 6166 -12 212 256 156 0 chr15 32630022 32630112 -53065642 - MIR SINE MIR -75 187 84 698 221 58 5 chr15 32631294 32631518 -53064236 + L1MA4 LINE L1 6056 6300 0 375 284 138 0 chr15 32631593 32631709 -53064045 - L2 LINE L2 -3 3269 3138 223 371 62 0 chr15 32631797 32631894 -53063860 - L2 LINE L2 -190 3082 2980 17157 95 12 3 chr15 32631902 32634966 -53060788 + L1PA7 LINE L1 2801 5888 -266 216 255 0 0 chr15 32635685 32635736 -53060018 + A-rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr15 32636394 32636418 -53059336 + AT_rich Low_complexity Low_complexity 1 24 0 2309 67 13 41 chr15 32637482 32637797 -53057957 - AluY SINE Alu -5 306 1 180 111 0 0 chr15 32638807 32638834 -53056920 + (T)n Simple_repeat Simple_repeat 1 27 0 2124 87 0 24 chr15 32641734 32642059 -53053695 - AluSx SINE Alu 0 318 1 597 353 123 20 chr15 32643563 32644212 -53051542 + L2 LINE L2 2044 2759 -555 216 344 0 32 chr15 32645072 32645165 -53050589 - MIR3 SINE MIR -6 202 113 21 71 0 0 chr15 32646043 32646085 -53049669 + AT_rich Low_complexity Low_complexity 1 42 0 415 318 30 30 chr15 32646457 32646589 -53049165 + L2 LINE L2 3137 3268 -4 1976 134 14 3 chr15 32647435 32647727 -53048027 - AluSx SINE Alu -17 295 1 870 244 0 21 chr15 32647752 32647945 -53047809 + MER5A DNA MER1_type 1 189 0 209 329 12 24 chr15 32649045 32649130 -53046624 - MER5A DNA MER1_type -1 188 105 276 269 0 21 chr15 32650375 32650468 -53045286 + A-rich Low_complexity Low_complexity 2 92 0 21 36 0 0 chr15 32652988 32653016 -53042738 + AT_rich Low_complexity Low_complexity 1 28 0 257 291 223 10 chr15 32653801 32653904 -53041850 - MER5B DNA MER1_type -52 126 2 27 29 0 0 chr15 32654892 32654926 -53040828 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr15 32654972 32654996 -53040758 + AT_rich Low_complexity Low_complexity 1 24 0 2056 118 3 10 chr15 32655112 32655417 -53040337 - AluSq SINE Alu -10 303 1 22 0 0 0 chr15 32655550 32655572 -53040182 + AT_rich Low_complexity Low_complexity 1 22 0 351 39 39 0 chr15 32658543 32658594 -53037160 + AluY SINE Alu 250 302 0 776 241 21 16 chr15 32658807 32658994 -53036760 + MER5A DNA MER1_type 1 188 -1 311 267 144 14 chr15 32659868 32660014 -53035740 + MIR SINE MIR 98 262 0 239 346 0 0 chr15 32660061 32660142 -53035612 + L2 LINE L2 3180 3260 -12 1583 100 26 13 chr15 32660677 32660907 -53034847 + AluSg/x SINE Alu 75 307 -5 207 154 19 19 chr15 32660940 32660992 -53034762 + T-rich Low_complexity Low_complexity 3 54 0 205 316 175 70 chr15 32662024 32662195 -53033559 + L2 LINE L2 3079 3267 -5 22 0 0 0 chr15 32663964 32663986 -53031768 + AT_rich Low_complexity Low_complexity 1 22 0 374 294 37 25 chr15 32664743 32664906 -53030848 - L1M4 LINE L1 -1191 5191 5027 2493 148 34 2 chr15 32664913 32665324 -53030430 + MSTA LTR MaLR 1 424 -4 629 268 124 6 chr15 32665377 32665732 -53030022 - L1M4 LINE L1 -1421 4961 4565 516 273 0 0 chr15 32665832 32665971 -53029783 - L1M4 LINE L1 -4800 1584 1446 1705 130 17 23 chr15 32665991 32666290 -53029464 - L1PA16 LINE L1 -9 6157 5861 256 0 24 49 chr15 32666321 32666362 -53029392 + (TTTTA)n Simple_repeat Simple_repeat 4 43 0 2541 141 70 12 chr15 32666362 32666850 -53028904 - L1MA4 LINE L1 -14 6286 5771 292 179 104 28 chr15 32666854 32666867 -53028887 - L1MA4A LINE L1 0 6303 6291 3350 157 108 49 chr15 32666867 32667832 -53027922 - L1MA4A LINE L1 0 6163 5256 2000 188 72 7 chr15 32667832 32668237 -53027517 - MSTB1 LTR MaLR -1 431 1 3350 157 108 49 chr15 32668237 32668413 -53027341 - L1MA4A LINE L1 -907 5256 5092 387 0 0 0 chr15 32668413 32668456 -53027298 + (TTA)n Simple_repeat Simple_repeat 3 45 0 24409 30 1 0 chr15 32668456 32672165 -53023589 - L1PA3 LINE L1 -18 6137 2427 3350 157 108 49 chr15 32672165 32672255 -53023499 - L1MA4A LINE L1 -1070 5093 4828 7079 225 32 120 chr15 32672306 32675867 -53019887 - L1 LINE L1 -3595 3253 5 25 75 0 0 chr15 32676066 32676119 -53019635 + AT_rich Low_complexity Low_complexity 1 53 0 289 328 127 22 chr15 32676393 32676527 -53019227 + MER5A DNA MER1_type 1 148 -41 1320 145 0 1 chr15 32676620 32676888 -53018866 - AluSc SINE Alu 0 307 1 257 132 0 19 chr15 32677058 32677111 -53018643 + (CA)n Simple_repeat Simple_repeat 2 53 0 236 233 0 0 chr15 32678386 32678429 -53017325 + (TCCA)n Simple_repeat Simple_repeat 4 46 0 1067 266 61 66 chr15 32678571 32679261 -53016493 + L2 LINE L2 2549 3244 -69 1790 159 36 7 chr15 32679261 32679384 -53016370 + AluSx SINE Alu 1 119 -193 351 0 0 0 chr15 32679384 32679423 -53016331 + (CA)n Simple_repeat Simple_repeat 2 40 0 1790 159 36 7 chr15 32679423 32679600 -53016154 + AluSx SINE Alu 119 310 -2 1067 266 61 66 chr15 32679600 32679670 -53016084 + L2 LINE L2 3244 3313 0 2062 157 0 0 chr15 32680618 32680923 -53014831 + AluSx SINE Alu 1 305 -7 198 191 0 0 chr15 32682612 32682654 -53013100 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 430 225 22 0 chr15 32682769 32682858 -53012896 - MLT1J1 LTR MaLR -355 91 1 196 385 0 24 chr15 32684207 32684290 -53011464 + L2 LINE L2 3191 3271 -1 1161 253 68 18 chr15 32684359 32684801 -53010953 - Zaphod DNA AcHobo 0 4031 3568 2687 232 68 92 chr15 32684808 32684854 -53010900 - Zaphod DNA AcHobo -2889 1142 1096 2248 53 42 7 chr15 32684854 32685138 -53010616 + AluY SINE Alu 1 294 -17 2687 232 68 92 chr15 32685138 32686260 -53009494 - Zaphod DNA AcHobo -2935 1096 1 221 146 21 0 chr15 32686496 32686544 -53009210 + CT-rich Low_complexity Low_complexity 3 51 0 402 206 0 28 chr15 32687272 32687379 -53008375 + L1PA11 LINE L1 6069 6172 -2 22 0 0 0 chr15 32687710 32687732 -53008022 + AT_rich Low_complexity Low_complexity 1 22 0 238 285 97 59 chr15 32688382 32688568 -53007186 - L2 LINE L2 -18 3295 3103 29 47 0 0 chr15 32688776 32688819 -53006935 + AT_rich Low_complexity Low_complexity 1 43 0 1478 149 42 7 chr15 32689052 32689341 -53006413 + L1MA8 LINE L1 5987 6285 -6 4081 71 3 39 chr15 32689518 32690111 -53005643 + L1PB1 LINE L1 5580 6151 0 303 317 22 126 chr15 32690376 32690647 -53005107 + L1MEc LINE L1 167 409 -5987 396 239 15 54 chr15 32690802 32690932 -53004822 - L1ME3A LINE L1 -146 6024 5900 10104 179 39 21 chr15 32691429 32692437 -53003317 + L1MA7 LINE L1 3103 4091 -2200 801 262 66 30 chr15 32692437 32692769 -53002985 - MER2 DNA MER2_type 0 344 1 10104 179 39 21 chr15 32692769 32694801 -53000953 + L1MA7 LINE L1 4091 6202 -89 362 244 22 22 chr15 32695005 32695095 -53000659 + L2 LINE L2 3168 3257 -56 359 289 22 30 chr15 32695092 32695227 -53000527 + MER5A DNA MER1_type 55 188 -1 * 3032 135 36 2 chr15 32695757 32696283 -52999471 - L1MA4 LINE L1 -11 6289 5746 305 287 134 42 chr15 32697921 32698137 -52997617 + L1MB4 LINE L1 5310 5545 -2263 754 297 20 8 chr15 32698191 32698440 -52997314 + L2 LINE L2 638 889 -2425 4708 113 24 82 chr15 32698457 32699330 -52996424 - LTR12 LTR ERV1 0 826 5 2364 193 38 34 chr15 32699346 32699957 -52995797 - pTR5 LTR ERV1 -1094 1344 732 1474 289 98 41 chr15 32700031 32700665 -52995089 + L2 LINE L2 1030 1699 -1615 1281 170 49 0 chr15 32700809 32701033 -52994721 - MER46A DNA MER2_type 0 236 2 33 0 0 0 chr15 32701105 32701138 -52994616 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr15 32701258 32701282 -52994472 + AT_rich Low_complexity Low_complexity 1 24 0 1264 152 0 0 chr15 32701356 32701554 -52994200 + L1PB1 LINE L1 1 198 -6665 * 13074 169 34 12 chr15 32701551 32705589 -52990165 + L1PB1 LINE L1 996 4945 -1922 405 0 0 0 chr15 32705589 32705634 -52990120 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 13074 169 34 12 chr15 32705634 32706986 -52988768 + L1PB1 LINE L1 4945 6266 -601 297 0 0 0 chr15 32706986 32707019 -52988735 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 378 0 0 0 chr15 32707018 32707060 -52988694 + (GA)n Simple_repeat Simple_repeat 2 43 0 13074 169 34 12 chr15 32707019 32707387 -52988367 + L1PB1 LINE L1 6266 6850 -17 318 50 0 0 chr15 32707390 32707430 -52988324 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 1418 157 15 110 chr15 32707432 32707658 -52988096 + L1MB4 LINE L1 5811 5982 -198 2000 110 0 4 chr15 32707658 32707930 -52987824 - AluSq SINE Alu -42 271 1 1418 157 15 110 chr15 32707930 32708111 -52987643 + L1MB4 LINE L1 5982 6179 -1 1048 137 78 4 chr15 32708113 32708417 -52987337 + L1MB5 LINE L1 5812 6169 -2 385 321 41 7 chr15 32708495 32708766 -52986988 + L1ME LINE L1 5534 5813 -308 10332 216 54 39 chr15 32708769 32711286 -52984468 + L1MA4A LINE L1 1 2556 -4293 41526 62 9 1 chr15 32711307 32717403 -52978351 + L1PA5 LINE L1 3 6147 -7 22 35 0 0 chr15 32717406 32717435 -52978319 + AT_rich Low_complexity Low_complexity 1 29 0 1577 196 9 11 chr15 32717435 32717858 -52977896 + L1MA4A LINE L1 2587 3010 -3838 285 152 13 25 chr15 32717860 32717939 -52977815 + (TA)n Simple_repeat Simple_repeat 2 79 0 10819 179 22 73 chr15 32717939 32719703 -52976051 + L1MA4A LINE L1 2960 4812 -2193 1803 124 106 4 chr15 32719703 32719978 -52975776 + AluSx SINE Alu 1 303 -9 10819 179 22 73 chr15 32719978 32722141 -52973613 + L1MA4A LINE L1 4812 6647 -358 1743 163 38 33 chr15 32722141 32722509 -52973245 - THE1C LTR MaLR -1 374 5 10819 179 22 73 chr15 32722509 32722847 -52972907 + L1MA4A LINE L1 6647 7001 -4 28 29 0 0 chr15 32722980 32723015 -52972739 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr15 32723532 32723553 -52972201 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr15 32725560 32725588 -52970166 + AT_rich Low_complexity Low_complexity 1 28 0 4359 72 0 5 chr15 32725647 32726218 -52969536 - L1PA8 LINE L1 0 6172 5605 2401 94 3 24 chr15 32726287 32726718 -52969036 - L1PA8 LINE L1 -543 5611 5194 22 0 0 0 chr15 32776883 32776905 -52918849 + AT_rich Low_complexity Low_complexity 1 22 0 532 168 76 23 chr15 32776925 32777056 -52918698 - L1MC3 LINE L1 -49 7736 7599 396 147 40 0 chr15 32777167 32777242 -52918512 - MER2 DNA MER2_type -138 207 130 2250 211 40 6 chr15 32777242 32777744 -52918010 - Tigger1 DNA MER2_type 0 2418 1900 2568 179 39 56 chr15 32777747 32778491 -52917263 - L1MCa LINE L1 -3948 2478 1831 1140 222 0 54 chr15 32778493 32778808 -52916946 - AluY SINE Alu -1 300 3 6751 107 30 19 chr15 32778948 32779933 -52915821 + HSMAR1 DNA Mariner 292 1287 0 2073 250 45 2 chr15 32780199 32780687 -52915067 - MLT2B1 LTR ERVL 0 520 12 189 107 0 0 chr15 32780818 32780846 -52914908 + (TTATG)n Simple_repeat Simple_repeat 2 29 0 1483 160 3 52 chr15 32781151 32781458 -52914296 + AluJb SINE Alu 5 296 -16 232 195 0 0 chr15 32782205 32782246 -52913508 - Alu SINE Alu -23 280 240 1215 191 44 17 chr15 32782351 32782645 -52913109 + AluSx SINE Alu 10 311 -1 393 117 0 0 chr15 32782735 32782795 -52912959 + (TC)n Simple_repeat Simple_repeat 1 60 0 943 255 4 22 chr15 32782798 32782924 -52912830 - L1PA13 LINE L1 -10 6153 6026 189 0 0 0 chr15 32782924 32782945 -52912809 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 943 255 4 22 chr15 32782945 32783089 -52912665 - L1PA13 LINE L1 -137 6026 5888 234 0 0 0 chr15 32783584 32783610 -52912144 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 446 0 0 18 chr15 32783625 32783680 -52912074 + (GAAA)n Simple_repeat Simple_repeat 2 55 0 551 237 0 53 chr15 32783837 32784027 -52911727 + AluSp SINE Alu 2 181 -132 4046 48 7 48 chr15 32784405 32784989 -52910765 - L1PA3 LINE L1 0 6155 5596 531 62 0 0 chr15 32784999 32785064 -52910690 + L1P LINE L1 4587 4651 -1495 425 216 0 6 chr15 32785529 32785710 -52910044 + GA-rich Low_complexity Low_complexity 1 180 0 470 275 0 6 chr15 32785732 32786069 -52909685 + GA-rich Low_complexity Low_complexity 1 334 0 1496 200 63 3 chr15 32786252 32786567 -52909187 + MER61B LTR ERV1 61 394 -31 307 341 99 56 chr15 32787166 32787650 -52908104 + L2 LINE L2 2804 3308 -5 1174 260 65 43 chr15 32788013 32788456 -52907298 + L1MCc LINE L1 18 470 -5953 253 252 8 41 chr15 32788491 32788614 -52907140 + A-rich Low_complexity Low_complexity 5 123 0 10857 189 34 33 chr15 32788811 32791081 -52904673 - L1M1 LINE L1 -4311 3254 982 4340 292 20 32 chr15 32791206 32792119 -52903635 + PRIMA41-int LTR ERV1 3628 4516 -3240 2501 125 5 35 chr15 32792119 32792327 -52903427 - THE1B LTR MaLR 0 364 170 1755 148 4 4 chr15 32792327 32792604 -52903150 + AluSx SINE Alu 23 299 -13 2501 125 5 35 chr15 32792604 32792770 -52902984 - THE1B LTR MaLR -194 170 1 4340 292 20 32 chr15 32792770 32793402 -52902352 + PRIMA41-int LTR ERV1 4516 5154 -2602 273 296 49 42 chr15 32793675 32793817 -52901937 - PRIMA41-int LTR ERV1 -7047 709 567 660 312 6 0 chr15 32794426 32794599 -52901155 - MER41D LTR ERV1 0 557 384 378 0 0 0 chr15 32795213 32795255 -52900499 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1097 114 5 42 chr15 32795259 32795452 -52900302 - AluSg/x SINE Alu -26 284 99 239 306 14 0 chr15 32796730 32796802 -52898952 + MER5A DNA MER1_type 31 103 -86 1500 160 0 8 chr15 32796863 32797107 -52898647 + AluSq SINE Alu 5 246 -67 249 244 51 13 chr15 32797125 32797203 -52898551 - MER5B DNA MER1_type -30 148 68 3743 206 9 17 chr15 32797224 32798102 -52897652 + L1 LINE L1 4190 5060 -1086 647 250 138 120 chr15 32798275 32798667 -52897087 - MLT1H1 LTR MaLR -143 424 1 281 153 14 69 chr15 32799469 32799482 -52896272 - L1P LINE L1 -795 5371 5359 2389 73 0 7 chr15 32799482 32799783 -52895971 - AluY SINE Alu -12 299 1 281 153 14 69 chr15 32799783 32799841 -52895913 - L1P LINE L1 -807 5359 5304 1618 197 42 13 chr15 32799845 32800226 -52895528 + L1P4 LINE L1 5390 5781 -385 18756 61 3 21 chr15 32800388 32803044 -52892710 + L1P LINE L1 1632 4241 -1905 14748 86 7 7 chr15 32803193 32805265 -52890489 - L1P LINE L1 -3399 2747 676 7171 132 18 39 chr15 32808402 32808688 -52887066 - L1PA7 LINE L1 -5 6149 5858 1931 132 62 3 chr15 32808688 32808976 -52886778 - AluSp SINE Alu -8 305 1 7171 132 18 39 chr15 32808976 32810755 -52884999 - L1PA7 LINE L1 -296 5858 4130 387 269 10 19 chr15 32811889 32811993 -52883761 + L1 LINE L1 3 105 -5850 504 240 0 0 chr15 32811995 32812099 -52883655 + FLAM_C SINE Alu 3 106 -37 260 253 53 27 chr15 32812099 32812174 -52883580 + L1 LINE L1 106 182 -5773 515 250 113 6 chr15 32812183 32812351 -52883403 + L1 LINE L1 4435 4620 -1414 630 332 88 9 chr15 32812385 32812725 -52883029 + L1 LINE L1 459 825 -5130 797 127 0 4 chr15 32812726 32812951 -52882803 + AluSg1 SINE Alu 3 316 0 295 200 0 0 chr15 32812954 32813004 -52882750 + L1 LINE L1 816 865 -5090 256 167 61 136 chr15 32813006 32813138 -52882616 + L1 LINE L1 3977 4098 -1936 1306 240 33 53 chr15 32813814 32814269 -52881485 - L1MA9 LINE L1 0 7731 7286 3450 213 67 23 chr15 32814381 32815725 -52880029 - L1MA9 LINE L1 -640 7091 5674 10081 216 83 13 chr15 32815863 32819305 -52876449 - L1MA9 LINE L1 -2767 4798 1119 605 203 21 56 chr15 32819444 32819587 -52876167 - LTR5 LTR ERVK -831 138 1 5972 129 42 97 chr15 32819589 32820472 -52875282 - Tigger1 DNA MER2_type -259 2159 1361 1841 140 12 58 chr15 32820472 32820800 -52874954 - AluSq SINE Alu 0 313 1 5972 129 42 97 chr15 32820800 32821138 -52874616 - Tigger1 DNA MER2_type -1057 1361 1006 532 176 29 0 chr15 32821133 32821235 -52874519 - Tigger1 DNA MER2_type -1908 510 406 * 274 291 39 22 chr15 32822287 32822469 -52873285 - LSAU Satellite Satellite -172 326 142 325 289 0 0 chr15 32822521 32822618 -52873136 + GA-rich Low_complexity Low_complexity 4 100 0 355 174 36 123 chr15 32823259 32823397 -52872357 + LSAU Satellite Satellite 2 127 -371 206 121 0 0 chr15 32824046 32824079 -52871675 + (A)n Simple_repeat Simple_repeat 1 33 0 216 260 0 0 chr15 32825910 32825960 -52869794 + GA-rich Low_complexity Low_complexity 1 50 0 182 154 0 77 chr15 32827056 32827121 -52868633 + CT-rich Low_complexity Low_complexity 2 61 0 395 224 0 99 chr15 32827451 32827603 -52868151 + LSAU Satellite Satellite 2 138 -360 234 213 32 0 chr15 32828587 32828681 -52867073 + CT-rich Low_complexity Low_complexity 1 97 0 241 310 0 0 chr15 32828701 32828772 -52866982 + CT-rich Low_complexity Low_complexity 1 71 0 504 182 41 145 chr15 32828813 32829055 -52866699 + Tigger1 DNA MER2_type 2202 2418 0 1503 160 60 26 chr15 32829741 32830010 -52865744 + AluSx SINE Alu 14 291 -21 4556 215 42 44 chr15 32832301 32833087 -52862667 - L1MA9 LINE L1 -6468 1097 312 1714 163 7 27 chr15 32833087 32833381 -52862373 - AluJb SINE Alu -24 288 1 4556 215 42 44 chr15 32833381 32833679 -52862075 - L1MA9 LINE L1 -7253 312 15 22 0 0 0 chr15 32833728 32833750 -52862004 + AT_rich Low_complexity Low_complexity 1 22 0 3356 254 60 73 chr15 32833975 32834835 -52860919 - L1PA12 LINE L1 -6379 1202 359 2258 108 3 0 chr15 32834835 32835140 -52860614 + AluSp SINE Alu 1 306 -7 3356 254 60 73 chr15 32835140 32835455 -52860299 - L1PA12 LINE L1 -7222 359 42 433 289 98 38 chr15 32836036 32836302 -52859452 + L1ME4a LINE L1 5672 5953 -168 611 307 170 34 chr15 32836968 32837688 -52858066 - L2 LINE L2 -1 3312 2478 422 324 57 9 chr15 32838017 32838227 -52857527 - LTR33 LTR ERVL -245 276 57 279 271 271 0 chr15 32838299 32838432 -52857322 - L2 LINE L2 -845 2469 2301 180 237 85 17 chr15 32839651 32839710 -52856044 + L3 LINE CR1 419 481 -1096 3862 138 14 34 chr15 32841686 32842403 -52853351 + L1PA15 LINE L1 5458 6160 -5 21 0 0 0 chr15 32843787 32843808 -52851946 + AT_rich Low_complexity Low_complexity 1 21 0 373 244 79 8 chr15 32843813 32843940 -52851814 + MER104 DNA Tc2 25 160 -20 1701 176 3 7 chr15 32844029 32844318 -52851436 + AluJb SINE Alu 1 288 -24 3756 248 61 54 chr15 32844331 32845863 -52849891 - L1ME1 LINE L1 -17 6149 4598 2198 95 3 7 chr15 32845863 32846158 -52849596 + AluSp SINE Alu 1 294 -19 3756 248 61 54 chr15 32846158 32847263 -52848491 - L1ME1 LINE L1 -1568 4598 3502 768 225 11 47 chr15 32847415 32847606 -52848148 - MER20 DNA MER1_type -34 185 2 484 324 96 14 chr15 32847609 32847828 -52847926 + MIR SINE MIR 24 260 -2 866 340 53 37 chr15 32849559 32850214 -52845540 + L1M2a LINE L1 1548 2213 -4955 613 254 0 0 chr15 32850216 32850338 -52845416 - FLAM_A SINE Alu -19 123 2 2695 263 64 24 chr15 32850360 32851772 -52843982 + L1MA8 LINE L1 2314 3780 -3785 1074 101 0 22 chr15 32851772 32852046 -52843708 + THE1B LTR MaLR 1 364 0 1158 239 10 10 chr15 32852048 32852362 -52843392 + L1MA8 LINE L1 3776 4089 -3476 4333 189 35 34 chr15 32852369 32853790 -52841964 + L1MA8 LINE L1 6225 7655 -55 2961 172 19 45 chr15 32853790 32854418 -52841336 + LTR9 LTR ERV1 1 612 0 4333 189 35 34 chr15 32854418 32854475 -52841279 + L1MA8 LINE L1 7655 7710 0 3260 253 61 77 chr15 32854752 32855076 -52840678 + L1PA12 LINE L1 42 370 -7211 2212 90 3 19 chr15 32855076 32855387 -52840367 - AluSp SINE Alu -7 306 1 3260 253 61 77 chr15 32855387 32856242 -52839512 + L1PA12 LINE L1 370 1202 -6379 22 0 0 0 chr15 32856463 32856485 -52839269 + AT_rich Low_complexity Low_complexity 1 22 0 18095 180 31 35 chr15 32856534 32856841 -52838913 + L1M1 LINE L1 15 322 -7399 1714 163 7 27 chr15 32856841 32857135 -52838619 + AluJb SINE Alu 1 288 -24 18095 180 31 35 chr15 32857135 32861698 -52834056 + L1M1 LINE L1 322 4900 -2821 1917 153 118 23 chr15 32861698 32862089 -52833665 - MSTA LTR MaLR 0 428 1 8514 177 29 12 chr15 32862089 32863713 -52832041 - MSTA-int LTR MaLR 0 1651 1 1893 146 159 11 chr15 32863713 32864084 -52831670 - MSTA LTR MaLR 0 428 3 18095 180 31 35 chr15 32864084 32864413 -52831341 + L1M1 LINE L1 4898 5227 -2494 1625 190 0 26 chr15 32864413 32864718 -52831036 + AluJb SINE Alu 1 297 -15 18095 180 31 35 chr15 32864718 32866727 -52829027 + L1M1 LINE L1 5227 7195 -526 198 0 0 0 chr15 32866926 32866948 -52828806 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1422 178 30 28 chr15 32867691 32868235 -52827519 + L1PB4 LINE L1 4983 5535 -743 2081 177 3 8 chr15 32868235 32868607 -52827147 + L1PB4 LINE L1 5769 6156 0 216 226 24 24 chr15 32868609 32868693 -52827061 + GA-rich Low_complexity Low_complexity 2 85 0 877 341 62 44 chr15 32868713 32869558 -52826196 + L2 LINE L2 2186 3047 -225 1890 128 30 20 chr15 32869628 32869925 -52825829 - AluSx SINE Alu -12 300 1 357 225 0 0 chr15 32870604 32870693 -52825061 + A-rich Low_complexity Low_complexity 1 89 0 365 307 64 35 chr15 32871562 32871764 -52823990 + MIR SINE MIR 1 208 -54 207 192 13 103 chr15 32874615 32874693 -52821061 + MIR SINE MIR 72 142 -120 357 24 0 0 chr15 32875616 32875658 -52820096 + (CA)n Simple_repeat Simple_repeat 2 43 0 429 256 8 39 chr15 32876075 32876204 -52819550 - L2 LINE L2 0 3313 3189 368 305 69 66 chr15 32876501 32876819 -52818935 + L1ME4a LINE L1 5645 5963 -158 29 77 0 0 chr15 32876891 32876943 -52818811 + AT_rich Low_complexity Low_complexity 1 52 0 325 307 72 72 chr15 32877307 32877626 -52818128 + L1ME4a LINE L1 5645 5963 -158 30 59 0 0 chr15 32877701 32877752 -52818002 + AT_rich Low_complexity Low_complexity 1 51 0 740 317 98 28 chr15 32878294 32878619 -52817135 - LTR33 LTR ERVL -168 353 6 1779 131 4 41 chr15 32879553 32879940 -52815814 - MER1B DNA MER1_type 0 333 1 491 347 57 20 chr15 32879973 32880221 -52815533 - MIR SINE MIR 0 262 6 259 307 0 13 chr15 32881715 32881790 -52813964 - MIR SINE MIR -181 81 8 26 30 0 0 chr15 32881807 32881840 -52813914 + AT_rich Low_complexity Low_complexity 1 33 0 929 200 5 10 chr15 32882581 32882776 -52812978 + L1PB1 LINE L1 1 194 -6669 13560 191 18 20 chr15 32882776 32883689 -52812065 + L1PB1 LINE L1 995 1909 -4958 1693 131 4 12 chr15 32883689 32883948 -52811806 + AluSc SINE Alu 39 295 -14 13560 191 18 20 chr15 32883948 32888684 -52807070 + L1PB1 LINE L1 1909 6866 -1 645 108 18 9 chr15 32888700 32888811 -52806943 + L1MB3 LINE L1 6065 6176 -7 195 299 30 15 chr15 32888957 32889024 -52806730 - L2 LINE L2 -6 3307 3240 480 305 76 96 chr15 32889895 32890396 -52805358 - L2 LINE L2 -535 2779 2289 1131 254 27 12 chr15 32890798 32891129 -52804625 - L1MA9 LINE L1 -38 6274 5939 298 314 78 6 chr15 32891279 32891636 -52804118 + L1M4 LINE L1 2239 2621 -3525 * 753 127 0 76 chr15 32891634 32891661 -52804093 + L1 LINE L1 4895 4922 -1224 2372 61 3 7 chr15 32891661 32891955 -52803799 + AluY SINE Alu 1 293 -18 753 127 0 76 chr15 32891955 32892084 -52803670 + L1 LINE L1 4922 5039 -1107 316 345 26 36 chr15 32892084 32892278 -52803476 + L1M4 LINE L1 2615 2806 -3340 607 320 21 51 chr15 32892278 32892609 -52803145 - MLT1I LTR MaLR -19 390 70 489 287 66 47 chr15 32892906 32893637 -52802117 + L1M4 LINE L1 4617 5361 -785 1429 261 33 72 chr15 32893653 32894648 -52801106 + L1MC4a LINE L1 6938 7802 -6 650 208 23 95 chr15 32894636 32894900 -52800854 + L1MEc LINE L1 1832 2076 -4320 * 1331 209 3 20 chr15 32895423 32895720 -52800034 - L1MA7 LINE L1 -403 5888 5597 901 207 23 5 chr15 32895725 32895942 -52799812 - L1MA7 LINE L1 -826 5320 5100 1385 188 71 33 chr15 32895944 32896255 -52799499 + L1MA7 LINE L1 5905 6234 -57 315 0 0 0 chr15 32896255 32896290 -52799464 + (TG)n Simple_repeat Simple_repeat 2 36 0 1385 188 71 33 chr15 32896290 32896345 -52799409 + L1MA7 LINE L1 6234 6285 -6 70 53 0 0 chr15 32896781 32896876 -52798878 + AT_rich Low_complexity Low_complexity 1 95 0 1579 158 140 29 chr15 32897011 32897396 -52798358 - MSTA LTR MaLR 0 428 1 541 271 65 49 chr15 32897448 32897876 -52797878 + L1MEc LINE L1 1262 1696 -4700 2163 113 0 34 chr15 32898239 32898559 -52797195 + AluSg SINE Alu 1 309 -1 261 243 117 18 chr15 32898757 32898868 -52796886 + L1ME1 LINE L1 5980 6101 -65 1872 257 110 18 chr15 32898932 32899721 -52796033 + L1MC4 LINE L1 6935 7796 -246 308 228 22 22 chr15 32899943 32900035 -52795719 + L1MC4a LINE L1 5812 5903 -1905 630 271 49 33 chr15 32900160 32900453 -52795301 + L1MC4a LINE L1 6596 6859 -949 231 36 0 0 chr15 32900454 32900482 -52795272 + (A)n Simple_repeat Simple_repeat 1 28 0 334 280 92 19 chr15 32900762 32900924 -52794830 + MIR SINE MIR 51 224 -38 432 244 57 43 chr15 32901156 32901350 -52794404 + L1MC5 LINE L1 6661 6860 -949 231 36 0 0 chr15 32901351 32901379 -52794375 + (A)n Simple_repeat Simple_repeat 1 28 0 371 319 38 13 chr15 32901663 32901820 -52793934 + MIR SINE MIR 64 224 -38 214 255 88 69 chr15 32901905 32902007 -52793747 - L2 LINE L2 -1 3271 3168 2355 90 3 3 chr15 32902014 32902325 -52793429 - AluY SINE Alu 0 311 1 333 0 0 0 chr15 32902451 32902488 -52793266 + (A)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr15 32903679 32903701 -52792053 + AT_rich Low_complexity Low_complexity 1 22 0 573 247 34 39 chr15 32903732 32903910 -52791844 - MER5B DNA MER1_type 0 178 2 1675 145 71 14 chr15 32905614 32905897 -52789857 + AluSx SINE Alu 3 301 -11 401 268 48 44 chr15 32905955 32906118 -52789636 + L1ME1 LINE L1 6012 6178 0 1690 139 11 8 chr15 32907800 32908066 -52787688 + AluSx SINE Alu 14 280 -32 243 333 0 0 chr15 32908075 32908144 -52787610 + GA-rich Low_complexity Low_complexity 2 70 0 359 134 0 15 chr15 32908371 32908438 -52787316 + L1MA1 LINE L1 6237 6302 0 2017 116 14 3 chr15 32909023 32909307 -52786447 + AluSq SINE Alu 1 287 -26 26 50 0 0 chr15 32909635 32909675 -52786079 + AT_rich Low_complexity Low_complexity 1 40 0 2241 144 56 3 chr15 32910420 32910794 -52784960 + MER61B LTR ERV1 1 394 -31 583 322 94 58 chr15 32911402 32911889 -52783865 + L2 LINE L2 2804 3308 -5 203 229 161 25 chr15 32911892 32912010 -52783744 - MIR SINE MIR -63 199 66 1310 243 60 49 chr15 32912254 32912702 -52783052 + L1MCc LINE L1 18 470 -5953 1629 251 90 14 chr15 32912814 32913377 -52782377 + L1MCc LINE L1 963 1566 -4856 216 384 0 0 chr15 32913701 32913774 -52781980 + MIR SINE MIR 67 139 -69 273 320 52 10 chr15 32914043 32914140 -52781614 + MIR3 SINE MIR 92 192 -16 42422 43 2 12 chr15 32914144 32920359 -52775395 + L1PA4 LINE L1 2 6152 -3 2852 189 41 12 chr15 32921157 32921516 -52774238 - MER6A DNA MER2_type -260 605 221 315 0 0 0 chr15 32921516 32921551 -52774203 + (CA)n Simple_repeat Simple_repeat 1 35 0 2852 189 41 12 chr15 32921551 32921779 -52773975 - MER6A DNA MER2_type -644 221 1 190 154 0 39 chr15 32922907 32922959 -52772795 + CT-rich Low_complexity Low_complexity 1 50 0 5698 139 42 33 chr15 32923044 32924155 -52771599 - MER52C LTR ERV1 0 1278 158 817 182 0 23 chr15 32925971 32926147 -52769607 - L1MA3 LINE L1 0 6305 6134 465 318 95 11 chr15 32926380 32926559 -52769195 - LTR16B LTR ERVL -270 194 1 1613 229 56 85 chr15 32927799 32928460 -52767294 + Charlie7 DNA MER1_type 499 1133 -1479 1883 109 0 77 chr15 32928460 32928772 -52766982 - AluSp SINE Alu -25 288 1 1613 229 56 85 chr15 32928772 32928947 -52766807 + Charlie7 DNA MER1_type 1133 1311 -1301 228 200 0 0 chr15 32929680 32929725 -52766029 - L2 LINE L2 -1 3312 3268 229 305 21 11 chr15 32929772 32929867 -52765887 + L1MC/D LINE L1 5665 5760 -2048 25 0 0 0 chr15 32929972 32929997 -52765757 + AT_rich Low_complexity Low_complexity 1 25 0 1507 255 88 34 chr15 32929997 32930694 -52765060 + Charlie7 DNA MER1_type 1399 2132 -480 495 297 32 16 chr15 32933342 32933527 -52762227 - LTR33 LTR ERVL -8 513 326 261 352 0 16 chr15 32933650 32933775 -52761979 - LTR33 LTR ERVL -373 148 26 25 37 0 0 chr15 32933856 32933883 -52761871 + AT_rich Low_complexity Low_complexity 1 27 0 259 299 62 55 chr15 32934166 32934587 -52761167 - HAL1b LINE L1 -921 427 4 23 33 0 0 chr15 32935906 32935936 -52759818 + AT_rich Low_complexity Low_complexity 1 30 0 384 302 126 11 chr15 32935936 32936118 -52759636 - L1MEc LINE L1 -4128 2268 2066 24 53 0 0 chr15 32936212 32936250 -52759504 + AT_rich Low_complexity Low_complexity 1 38 0 228 347 22 48 chr15 32936262 32936530 -52759224 - L1MEc LINE L1 -4580 1816 1556 232 317 0 12 chr15 32936894 32936976 -52758778 - L1MEc LINE L1 -5101 1104 1024 5592 120 21 13 chr15 32937339 32938256 -52757498 - L1MA2 LINE L1 0 7723 6800 2389 112 9 37 chr15 32938256 32938685 -52757069 + MER11A LTR ERVK 850 1266 0 6732 176 21 13 chr15 32938716 32940092 -52755662 - L1MA2 LINE L1 -862 6703 5317 * 11800 159 30 19 chr15 32940084 32942957 -52752797 - L1MA2 LINE L1 -3116 4449 1540 1220 183 21 13 chr15 32942959 32943277 -52752477 + MER52A LTR ERV1 1391 1755 0 727 216 13 13 chr15 32943278 32943431 -52752323 - L1MA2 LINE L1 -7229 336 184 347 102 0 17 chr15 32943433 32943525 -52752229 + L1PA7 LINE L1 6092 6154 0 2333 308 248 19 chr15 32943599 32944702 -52751052 - L2 LINE L2 -6 3307 2458 1605 197 16 19 chr15 32944702 32945068 -52750686 + MLT1A1 LTR MaLR 1 365 0 2333 308 248 19 chr15 32945068 32946057 -52749697 - L2 LINE L2 -855 2458 727 22 35 0 0 chr15 32997088 32997117 -52698637 + AT_rich Low_complexity Low_complexity 1 29 0 190 175 25 25 chr15 32997125 32997165 -52698589 - L3 LINE CR1 -19 1558 1519 690 258 81 54 chr15 32997320 32997378 -52698376 + MLT1J LTR MaLR 91 146 -365 1356 159 95 58 chr15 32997378 32997705 -52698049 + MER44D DNA MER2_type 1 609 0 690 258 81 54 chr15 32997705 32997998 -52697756 + MLT1J LTR MaLR 146 488 -23 310 380 34 77 chr15 32998056 32998498 -52697256 - L2 LINE L2 -22 3250 2828 526 359 43 17 chr15 32998660 32998894 -52696860 - MIR SINE MIR -7 255 16 252 177 16 32 chr15 32999145 32999207 -52696547 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 206 167 93 37 chr15 32999208 32999262 -52696492 - MIR3 SINE MIR -10 198 142 23 0 0 0 chr15 32999988 33000011 -52695743 + AT_rich Low_complexity Low_complexity 1 23 0 371 232 116 18 chr15 33000836 33000948 -52694806 - MER67D LTR ERV1 -8 506 384 1016 186 14 124 chr15 33000954 33001244 -52694510 - MER67D LTR ERV1 -256 258 1 303 296 98 0 chr15 33001401 33001533 -52694221 + L1M4 LINE L1 2678 2822 -3324 25 31 0 0 chr15 33001533 33001565 -52694189 + AT_rich Low_complexity Low_complexity 1 32 0 483 276 83 26 chr15 33002068 33002127 -52693627 + MLT1J2 LTR MaLR 37 91 -359 3955 103 5 0 chr15 33002127 33002678 -52693076 - MER41A LTR ERV1 0 554 1 483 276 83 26 chr15 33002678 33002810 -52692944 + MLT1J2 LTR MaLR 91 239 -211 254 114 0 0 chr15 33003241 33003276 -52692478 + MLT2B2 LTR ERVL 1 35 -480 717 124 8 47 chr15 33003276 33003405 -52692349 - MSTA LTR MaLR 0 428 305 274 95 0 0 chr15 33003419 33003461 -52692293 - L1MA3 LINE L1 -132 6173 6132 841 88 0 0 chr15 33003461 33003574 -52692180 + L1MA1 LINE L1 6184 6296 -6 2620 179 32 54 chr15 33003578 33004138 -52691616 - Tigger1 DNA MER2_type -1864 554 7 298 226 0 0 chr15 33004150 33004212 -52691542 + L1MA5 LINE L1 6235 6296 -4 320 306 24 24 chr15 33004728 33004852 -52690902 + MIR SINE MIR 139 262 0 2103 132 3 0 chr15 33004877 33005172 -52690582 - AluSx SINE Alu -15 297 2 1261 251 98 21 chr15 33005395 33005773 -52689981 - MLT1E2 LTR MaLR -182 444 38 216 135 0 0 chr15 33005823 33005860 -52689894 + (TAA)n Simple_repeat Simple_repeat 2 38 0 660 266 87 5 chr15 33005863 33006047 -52689707 - MIR SINE MIR -33 229 31 394 333 98 51 chr15 33006230 33006751 -52689003 - L2 LINE L2 -254 3018 2480 530 239 134 0 chr15 33007017 33007159 -52688595 + MER5B DNA MER1_type 2 162 -16 300 286 38 8 chr15 33007964 33008015 -52687739 - L1MA10 LINE L1 -23 6311 6261 1177 256 151 28 chr15 33008015 33008518 -52687236 - L1ME1 LINE L1 -66 6100 5536 735 333 91 38 chr15 33008523 33009126 -52686628 - HAL1 LINE L1 -1837 670 36 291 313 203 9 chr15 33009531 33009758 -52685996 + L3 LINE CR1 1152 1422 -155 1805 153 0 49 chr15 33009940 33010267 -52685487 + AluJb SINE Alu 1 311 -1 317 65 0 0 chr15 33010762 33010808 -52684946 - L1PA7 LINE L1 0 6154 6109 2307 172 62 22 chr15 33011929 33012194 -52683560 - L1MB8 LINE L1 -6 6172 5919 2356 126 16 8 chr15 33012194 33012566 -52683188 - THE1C LTR MaLR 0 375 1 2307 172 62 22 chr15 33012566 33012836 -52682918 - L1MB8 LINE L1 -259 5919 5616 433 239 218 0 chr15 33013126 33013323 -52682431 - L1ME LINE L1 -309 5812 5573 509 199 172 33 chr15 33014481 33014632 -52681122 + FAM SINE Alu 1 172 -3 425 272 169 10 chr15 33015609 33015804 -52679950 + MIR SINE MIR 28 253 -9 313 117 242 8 chr15 33016738 33016866 -52678888 - Charlie1 DNA MER1_type -71 2690 2533 4446 187 24 35 chr15 33016887 33017982 -52677772 - L1MA9 LINE L1 -38 7693 6610 1529 205 57 3 chr15 33018008 33018374 -52677380 - L1MA9 LINE L1 -2182 5383 4998 1089 279 0 0 chr15 33018428 33018729 -52677025 - AluY SINE Alu 0 301 1 225 273 0 0 chr15 33018730 33018829 -52676925 - L1P LINE L1 -2183 3963 3865 1125 75 0 0 chr15 33018941 33019075 -52676679 - AluY SINE Alu -177 134 1 10126 126 25 2 chr15 33019084 33020763 -52674991 - L1P LINE L1 -2191 3955 2239 5924 138 12 0 chr15 33020769 33021697 -52674057 + L1P LINE L1 3977 4915 -1231 1112 204 40 9 chr15 33021710 33022038 -52673716 - L1MA9 LINE L1 -2670 4895 4558 412 225 144 0 chr15 33022061 33022172 -52673582 - L1MA9 LINE L1 -3404 4161 4035 198 70 0 88 chr15 33022179 33022236 -52673518 + (TCTCCC)n Simple_repeat Simple_repeat 2 53 0 9190 71 51 8 chr15 33022237 33023483 -52672271 + SVA Other Other 2 1301 -85 3683 100 4 10 chr15 33023584 33024092 -52671662 + SVA Other Other 882 1386 0 1693 234 42 11 chr15 33024129 33024809 -52670945 - L1MA9 LINE L1 -3522 4043 3344 254 250 60 24 chr15 33025029 33025113 -52670641 - L2 LINE L2 0 3313 3227 407 242 78 31 chr15 33025185 33025313 -52670441 + MIR SINE MIR 79 212 -50 23 33 0 0 chr15 33025562 33025592 -52670162 + AT_rich Low_complexity Low_complexity 1 30 0 4875 151 34 18 chr15 33026643 33027559 -52668195 + L1MA4A LINE L1 5368 6298 -5 817 271 60 11 chr15 33028666 33028947 -52666807 - LTR16A LTR ERVL 0 450 156 387 330 21 14 chr15 33029535 33029865 -52665889 - ERVL LTR ERVL -765 4999 4605 3817 148 24 29 chr15 33031663 33032384 -52663370 - LTR62 LTR ERVK -2 717 1 466 329 0 8 chr15 33032907 33033055 -52662699 - MIR3 SINE MIR -48 160 13 877 236 148 101 chr15 33033625 33034494 -52661260 - L1MC4 LINE L1 -6 8036 7122 623 250 102 5 chr15 33034494 33034690 -52661064 - MER58C DNA MER1_type 0 215 1 877 236 148 101 chr15 33034690 33034722 -52661032 - L1MC4 LINE L1 -920 7122 7093 258 32 0 0 chr15 33034733 33034764 -52660990 + (TG)n Simple_repeat Simple_repeat 2 32 0 957 197 14 34 chr15 33034907 33035115 -52660639 - MER3 DNA MER1_type 0 209 6 4276 138 14 1 chr15 33035348 33036017 -52659737 - L1PA15 LINE L1 -4 6161 5485 1114 130 66 15 chr15 33036119 33036378 -52659376 - L1PA15 LINE L1 -687 5478 5180 24 0 0 0 chr15 33036378 33036402 -52659352 + AT_rich Low_complexity Low_complexity 1 24 0 14399 163 42 9 chr15 33036411 33041530 -52654224 - L1MA1 LINE L1 -4 7717 2418 6194 159 19 6 chr15 33041553 33043398 -52652356 - L1PB1 LINE L1 -6 6145 4275 * 6350 191 108 5 chr15 33043395 33044790 -52650964 - L1MA1 LINE L1 -5144 2421 521 1021 186 0 0 chr15 33044790 33044957 -52650797 + AluJb SINE Alu 133 299 -13 1955 245 24 39 chr15 33044957 33045492 -52650262 - L1MA1 LINE L1 -7031 534 8 7948 214 10 4 chr15 33045495 33047219 -52648535 - L1P LINE L1 -958 5188 3455 3632 207 17 7 chr15 33047270 33048273 -52647481 - L1PA13 LINE L1 -4223 2574 1551 2489 241 38 43 chr15 33048291 33048902 -52646852 - L1PA13 LINE L1 -6177 610 3 1039 233 44 25 chr15 33048921 33049086 -52646668 - AluJo SINE Alu -16 296 123 239 0 32 0 chr15 33049086 33049117 -52646637 + (TTTTA)n Simple_repeat Simple_repeat 5 36 0 1039 233 44 25 chr15 33049117 33049226 -52646528 - AluJo SINE Alu -189 123 17 1129 125 0 24 chr15 33049280 33049448 -52646306 + AluSg/x SINE Alu 135 298 -14 267 197 33 0 chr15 33049451 33049512 -52646242 + L1MA9 LINE L1 6229 6291 -21 247 65 43 0 chr15 33049541 33049587 -52646167 + (TA)n Simple_repeat Simple_repeat 1 48 0 40012 72 4 4 chr15 33049620 33055758 -52639996 - L1PA5 LINE L1 -5 6149 11 539 333 42 42 chr15 33055816 33056170 -52639584 - L1M4 LINE L1 -3611 2535 2182 2132 121 0 0 chr15 33057348 33057628 -52638126 - AluSg SINE Alu -30 280 1 28 29 0 0 chr15 33057945 33057980 -52637774 + AT_rich Low_complexity Low_complexity 1 35 0 4292 170 30 19 chr15 33057980 33058867 -52636887 - L1MA6 LINE L1 0 6942 6046 1488 182 69 90 chr15 33058867 33059429 -52636325 - MLT2A2 LTR ERVL 0 554 1 10543 219 25 62 chr15 33059434 33062530 -52633224 - L1MA6 LINE L1 -743 6045 3066 493 206 48 12 chr15 33062521 33062684 -52633070 - L1MA6 LINE L1 -6535 254 3 * 772 232 30 5 chr15 33062680 33062878 -52632876 - L1 LINE L1 -1827 5738 5536 324 221 13 0 chr15 33062926 33063003 -52632751 - L1 LINE L1 -2024 5541 5464 * 4248 236 73 53 chr15 33062995 33064997 -52630757 - L1 LINE L1 -2797 4768 2971 2001 189 65 5 chr15 33064997 33065399 -52630355 + MSTB LTR MaLR 1 426 0 4248 236 73 53 chr15 33065399 33066293 -52629461 - L1 LINE L1 -4594 2971 2097 1394 300 89 32 chr15 33066389 33066938 -52628816 - L1 LINE L1 -6151 1415 828 261 0 0 0 chr15 33066938 33066967 -52628787 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1394 300 89 32 chr15 33066967 33067014 -52628740 - L1 LINE L1 -6738 828 785 211 342 38 0 chr15 33067551 33067630 -52628124 + MIR SINE MIR 64 145 -63 649 323 201 29 chr15 33067819 33068073 -52627681 + L2 LINE L2 1293 1502 -1812 1950 150 29 47 chr15 33068073 33068453 -52627301 + THE1C LTR MaLR 1 373 -2 649 323 201 29 chr15 33068453 33068883 -52626871 + L2 LINE L2 1502 2095 -1219 1231 220 50 73 chr15 33068979 33069461 -52626293 - LTR53 LTR ERVL -12 507 37 842 310 65 49 chr15 33069465 33069991 -52625763 + L2 LINE L2 2194 2727 -587 342 340 156 35 chr15 33070612 33071147 -52624607 + L2 LINE L2 2716 3312 -1 923 192 206 9 chr15 33071210 33071604 -52624150 - Charlie1b DNA MER1_type 0 523 44 238 308 51 51 chr15 33071738 33071855 -52623899 + MIR3 SINE MIR 39 155 -53 721 221 123 6 chr15 33072898 33073061 -52622693 - MER5A DNA MER1_type -6 183 2 296 230 54 0 chr15 33073134 33073208 -52622546 + MIR SINE MIR 72 149 -113 2215 102 0 10 chr15 33073390 33073695 -52622059 + AluSg1 SINE Alu 1 302 -7 1420 290 145 47 chr15 33074118 33074890 -52620864 + L2 LINE L2 80 927 -2387 324 102 0 0 chr15 33075862 33075911 -52619843 + (T)n Simple_repeat Simple_repeat 1 49 0 460 332 75 22 chr15 33075945 33076171 -52619583 + MIR SINE MIR 9 246 -16 2376 95 0 0 chr15 33076939 33077235 -52618519 + AluSg SINE Alu 1 296 -14 2698 118 9 14 chr15 33077730 33078161 -52617593 + L1MA3 LINE L1 5877 6305 0 37 0 0 0 chr15 33078354 33078391 -52617363 + AT_rich Low_complexity Low_complexity 1 37 0 317 165 25 25 chr15 33078538 33078617 -52617137 + L1MC2 LINE L1 6255 6333 -11 1735 202 8 16 chr15 33079223 33079452 -52616302 - MLT1A1 LTR MaLR -2 363 134 1560 155 188 25 chr15 33079452 33079820 -52615934 + MSTA LTR MaLR 1 428 0 8940 143 24 41 chr15 33079822 33081425 -52614329 + MSTA-int LTR MaLR 3 1578 -2 1469 182 168 32 chr15 33081427 33081801 -52613953 + MSTA LTR MaLR 1 425 -3 1735 202 8 16 chr15 33081801 33081931 -52613823 - MLT1A1 LTR MaLR -233 132 1 458 218 0 27 chr15 33082560 33082670 -52613084 + MLT1I LTR MaLR 303 409 0 22 56 0 0 chr15 33083297 33083333 -52612421 + AT_rich Low_complexity Low_complexity 1 36 0 283 250 120 0 chr15 33083440 33083548 -52612206 - MIR SINE MIR -50 212 92 302 253 13 0 chr15 33084875 33084954 -52610800 + MIR3 SINE MIR 109 188 -20 2166 133 0 0 chr15 33085641 33085941 -52609813 - AluSx SINE Alu -12 300 1 223 348 82 70 chr15 33086008 33086448 -52609306 + L2 LINE L2 2376 2820 -494 1768 171 34 8 chr15 33086501 33086587 -52609167 + MLT2D LTR ERVL 3 85 -329 663 169 0 23 chr15 33086587 33086717 -52609037 + L1PB4 LINE L1 6028 6154 -2 1768 171 34 8 chr15 33086717 33086981 -52608773 + MLT2D LTR ERVL 85 362 -52 371 275 83 0 chr15 33087631 33087740 -52608014 - MIR SINE MIR -66 142 25 563 258 50 6 chr15 33088234 33088393 -52607361 - MIR SINE MIR -13 249 84 1978 203 18 24 chr15 33089066 33089524 -52606230 - L1MA6 LINE L1 -5 7316 6862 4557 161 48 3 chr15 33089528 33090460 -52605294 - L1MA6 LINE L1 -1197 5970 4997 3320 169 42 57 chr15 33090460 33091247 -52604507 - LTR1 LTR ERV1 0 785 11 6084 234 57 14 chr15 33091261 33093318 -52602436 - L1MA6 LINE L1 -2168 4999 2851 269 347 28 7 chr15 33093475 33093619 -52602135 - L1MA6 LINE L1 -7018 150 4 1239 174 16 8 chr15 33094182 33094440 -52601314 + L1MD3 LINE L1 7736 7995 0 322 242 11 11 chr15 33094448 33094543 -52601211 + L1MC4 LINE L1 6494 6588 -1454 387 344 25 19 chr15 33095188 33095348 -52600406 + MIR3 SINE MIR 40 200 -8 516 296 68 0 chr15 33095411 33095587 -52600167 - MIR SINE MIR -34 228 41 363 266 18 18 chr15 33095589 33095702 -52600052 - L2 LINE L2 -749 2565 2453 264 238 16 0 chr15 33096317 33096380 -52599374 + MER117 DNA MER1_type 1 64 -133 262 297 33 44 chr15 33096478 33096569 -52599185 + L3 LINE CR1 1371 1460 -117 261 242 50 17 chr15 33096620 33096740 -52599014 + L1ME4a LINE L1 5994 6117 -4 768 217 24 6 chr15 33097198 33097364 -52598390 + MIR SINE MIR 69 237 -25 210 283 38 0 chr15 33097332 33097385 -52598369 + L2 LINE L2 3210 3264 -8 * 2226 105 0 3 chr15 33097759 33098053 -52597701 - AluSg SINE Alu -17 293 1 29 0 0 0 chr15 33098298 33098327 -52597427 + AT_rich Low_complexity Low_complexity 1 29 0 2163 89 3 80 chr15 33099999 33100326 -52595428 - AluSp SINE Alu -11 302 1 364 293 167 32 chr15 33100424 33100670 -52595084 + L2 LINE L2 2633 2911 -403 831 231 18 83 chr15 33100689 33101026 -52594728 + MLT2C1 LTR ERVL 17 331 -66 1826 197 47 5 chr15 33101139 33101525 -52594229 + MSTB LTR MaLR 1 402 -24 778 277 136 19 chr15 33101546 33101856 -52593898 + L2 LINE L2 2967 3312 -1 1785 201 0 0 chr15 33102582 33102891 -52592863 + AluJb SINE Alu 1 309 -3 380 300 88 6 chr15 33103287 33103447 -52592307 + L1MC/D LINE L1 5069 5241 -905 400 330 83 16 chr15 33103511 33103823 -52591931 + L1MC/D LINE L1 5313 5645 -2163 376 293 133 48 chr15 33105247 33105435 -52590319 + MIR SINE MIR 26 229 -33 889 149 60 30 chr15 33106321 33106489 -52589265 + FRAM SINE Alu 1 166 -10 382 244 118 0 chr15 33107257 33107376 -52588378 - MIR SINE MIR -6 256 124 630 270 42 5 chr15 33107449 33107638 -52588116 + MIR SINE MIR 12 207 -55 252 284 48 25 chr15 33107871 33107963 -52587791 - MIR SINE MIR -71 137 45 1976 159 108 16 chr15 33108008 33108265 -52587489 - MLT1C LTR MaLR 0 467 235 414 0 0 0 chr15 33108265 33108311 -52587443 + (TG)n Simple_repeat Simple_repeat 2 47 0 1976 159 108 16 chr15 33108311 33108481 -52587273 - MLT1C LTR MaLR -232 235 1 1847 215 20 16 chr15 33109112 33109558 -52586196 + L1MA10 LINE L1 5874 6321 -13 617 291 48 65 chr15 33109578 33109808 -52585946 - MIR SINE MIR -19 243 18 367 364 120 7 chr15 33110229 33110520 -52585234 - L1 LINE L1 -1127 5019 4696 3149 184 45 106 chr15 33110546 33111513 -52584241 - MER21A LTR ERV1 -6 925 17 2131 135 3 3 chr15 33111658 33111969 -52583785 + AluSq SINE Alu 3 313 0 440 285 37 48 chr15 33112115 33112385 -52583369 - L1 LINE L1 -2800 3346 3080 21 71 0 0 chr15 33112416 33112458 -52583296 + AT_rich Low_complexity Low_complexity 1 42 0 2219 130 0 0 chr15 33112629 33112937 -52582817 - AluSg SINE Alu -2 308 1 348 24 0 0 chr15 33113932 33113973 -52581781 + (CA)n Simple_repeat Simple_repeat 1 41 0 477 339 76 5 chr15 33114761 33114985 -52580769 + MIR SINE MIR 13 252 -10 2458 76 0 3 chr15 33115635 33115939 -52579815 - AluY SINE Alu -8 303 1 28608 113 11 68 chr15 33116600 33121750 -52574004 + L1PA7 LINE L1 1 4687 -1467 2399 90 0 6 chr15 33121750 33122061 -52573693 + AluSg SINE Alu 1 309 -1 28608 113 11 68 chr15 33122061 33123449 -52572305 + L1PA7 LINE L1 4687 6153 -1 188 57 0 57 chr15 33123752 33123787 -52571967 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 311 220 192 10 chr15 33123956 33124156 -52571598 - MER5C DNA MER1_type -2 322 14 433 238 112 24 chr15 33124175 33124477 -52571277 + L1MEd LINE L1 1016 1381 -4865 1535 155 48 16 chr15 33124496 33124806 -52570948 + L1MC/D LINE L1 5290 5609 -724 825 281 98 39 chr15 33124819 33125260 -52570494 + L1M3b LINE L1 1219 1685 -5811 6365 225 57 16 chr15 33125677 33128935 -52566819 + L1M3b LINE L1 2078 5409 -2156 1094 293 48 9 chr15 33128948 33129473 -52566281 + L1PBa LINE L1 7 551 -6312 225 287 85 57 chr15 33129504 33129786 -52565968 - HAL1 LINE L1 -963 1544 1255 226 269 192 13 chr15 33131370 33131448 -52564306 - MIR SINE MIR -75 133 42 651 238 122 0 chr15 33131689 33131836 -52563918 - FAM SINE Alu -8 41 1 1118 162 0 0 chr15 33132907 33133080 -52562674 + AluJo SINE Alu 127 299 -13 8482 179 43 30 chr15 33133199 33136168 -52559586 + L1MA7 LINE L1 3287 6289 -2 2489 74 0 0 chr15 33136649 33136959 -52558795 + AluY SINE Alu 1 310 -1 1343 229 56 20 chr15 33137134 33137566 -52558188 + L1MC4a LINE L1 6604 6999 -809 21872 59 2 2 chr15 33137578 33140496 -52555258 + L1PA3 LINE L1 9 2926 -3220 309 238 0 0 chr15 33140659 33140760 -52554994 + A-rich Low_complexity Low_complexity 1 101 0 210 136 34 17 chr15 33140862 33140921 -52554833 + GA-rich Low_complexity Low_complexity 1 60 0 19685 33 5 0 chr15 33140924 33144087 -52551667 + L1PA3 LINE L1 2986 6152 -3 1989 248 60 41 chr15 33144098 33144908 -52550846 + L1MC4a LINE L1 6983 7808 0 275 270 40 0 chr15 33145011 33145085 -52550669 - L2 LINE L2 -12 3260 3184 214 286 0 0 chr15 33145200 33145249 -52550505 - L2 LINE L2 -352 2961 2913 2155 101 34 0 chr15 33146410 33146707 -52549047 - AluSx SINE Alu -5 307 1 4407 217 22 0 chr15 33146783 33147663 -52548091 + MER54A LTR ERVL 3 901 0 28 0 0 0 chr15 33147760 33147788 -52547966 + AT_rich Low_complexity Low_complexity 1 28 0 1862 144 7 17 chr15 33148242 33148534 -52547220 + AluJb SINE Alu 1 289 -23 294 247 97 11 chr15 33148582 33148675 -52547079 + Charlie8 DNA MER1_type 127 227 -2190 204 339 118 16 chr15 33149376 33149503 -52546251 - MIR3 SINE MIR -31 177 38 211 263 232 0 chr15 33150112 33150211 -52545543 + MIR SINE MIR 63 184 -78 303 202 8 143 chr15 33150299 33150418 -52545336 + MIR3 SINE MIR 94 196 -12 252 59 0 0 chr15 33151697 33151731 -52544023 + (TG)n Simple_repeat Simple_repeat 1 34 0 1978 122 29 35 chr15 33151733 33152110 -52543644 - L1MA3 LINE L1 -44 6261 5887 * 2559 158 39 54 chr15 33152094 33152409 -52543345 - L1 LINE L1 -1509 6056 5753 2898 26 0 6 chr15 33152409 33152751 -52543003 + L1PA5 LINE L1 5809 6148 -6 2559 158 39 54 chr15 33152751 33153048 -52542706 - L1 LINE L1 -1812 5753 5453 2279 178 97 21 chr15 33153049 33153522 -52542232 + LTR22 LTR ERVK 1 509 0 4447 134 17 0 chr15 33153522 33154259 -52541495 + HERVK22 LTR ERVK 1 786 -6051 * 19689 101 9 10 chr15 33154252 33157410 -52538344 + HERVK22 LTR ERVK 2314 6837 0 1207 226 96 12 chr15 33157410 33157816 -52537938 + LTR22 LTR ERVK 1 509 0 19228 169 85 14 chr15 33157817 33162880 -52532874 - L1 LINE L1 -2109 5456 12 235 352 72 51 chr15 33163159 33163491 -52532263 + L2 LINE L2 2914 3252 -20 246 353 52 60 chr15 33163677 33163929 -52531825 + L2 LINE L2 1042 1291 -2023 235 323 91 55 chr15 33164258 33164478 -52531276 - MLT1L LTR MaLR -11 604 377 370 218 139 0 chr15 33164553 33164654 -52531100 - MLT1L LTR MaLR -337 278 164 332 310 90 7 chr15 33165472 33165627 -52530127 + MIR SINE MIR 85 252 -10 562 268 138 18 chr15 33165682 33165906 -52529848 - MIR SINE MIR 0 262 12 287 281 153 36 chr15 33166128 33166324 -52529430 + MIR SINE MIR 44 262 0 303 28 0 0 chr15 33166620 33166656 -52529098 + (CA)n Simple_repeat Simple_repeat 1 36 0 5047 81 17 1 chr15 33166729 33167417 -52528337 + L1PA8 LINE L1 5474 6172 0 1245 108 18 0 chr15 33168209 33168375 -52527379 + AluSg/x SINE Alu 129 297 -13 2280 177 31 15 chr15 33169121 33169662 -52526092 - L1PB4 LINE L1 -1278 4868 4319 1930 183 39 22 chr15 33169662 33170236 -52525518 + L1PB4 LINE L1 4881 5463 -693 4165 118 67 1 chr15 33170236 33170897 -52524857 - L1PA11 LINE L1 -4 6170 5467 1930 183 39 22 chr15 33170897 33170939 -52524815 + L1PB4 LINE L1 5463 5503 -653 1982 171 55 17 chr15 33170939 33171343 -52524411 + L1PB4 LINE L1 5731 6149 -7 2437 62 0 10 chr15 33171532 33171837 -52523917 + AluY SINE Alu 1 302 -9 28 0 0 0 chr15 33172629 33172657 -52523097 + AT_rich Low_complexity Low_complexity 1 28 0 1540 192 10 24 chr15 33172852 33173144 -52522610 + AluJo SINE Alu 1 288 -24 2122 116 7 3 chr15 33173884 33174186 -52521568 + AluSp SINE Alu 7 309 -4 13986 161 29 7 chr15 33174731 33181175 -52514579 + L1MA1 LINE L1 1136 7721 0 29 47 0 0 chr15 33181175 33181218 -52514536 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr15 33181556 33181578 -52514176 + AT_rich Low_complexity Low_complexity 1 22 0 315 308 63 20 chr15 33182566 33182819 -52512935 + L1ME4a LINE L1 5602 5865 -256 272 204 133 9 chr15 33182903 33183016 -52512738 + L1ME4a LINE L1 5969 6095 -26 2236 92 7 0 chr15 33183998 33184280 -52511474 + AluSx SINE Alu 11 294 -18 225 281 44 9 chr15 33184667 33184781 -52510973 - MER103 DNA DNA -3 163 46 2585 181 64 10 chr15 33184951 33185631 -52510123 - L1MA8 LINE L1 -1 6299 5559 10418 188 102 14 chr15 33185631 33185852 -52509902 - L1PBa LINE L1 -1756 5106 4906 2321 88 0 3 chr15 33185852 33186146 -52509608 - AluY SINE Alu -18 293 1 10418 188 102 14 chr15 33186146 33186327 -52509427 - L1PBa LINE L1 -1956 4906 4742 2427 96 6 11 chr15 33186327 33186690 -52509064 - L1PB1 LINE L1 0 6151 5791 10418 188 102 14 chr15 33186690 33188436 -52507318 - L1PBa LINE L1 -2120 4742 3150 360 0 0 0 chr15 33188436 33188476 -52507278 + (TG)n Simple_repeat Simple_repeat 2 41 0 10418 188 102 14 chr15 33188476 33190212 -52505542 - L1PBa LINE L1 -3712 3150 764 3547 243 63 13 chr15 33190213 33191060 -52504694 - L1 LINE L1 -3124 3982 3179 1746 179 3 10 chr15 33191060 33191372 -52504382 - AluSx SINE Alu 0 312 3 3547 243 63 13 chr15 33191372 33192276 -52503478 - L1 LINE L1 -3927 3179 2144 270 0 0 0 chr15 33192276 33192306 -52503448 + (T)n Simple_repeat Simple_repeat 1 30 0 2903 22 11 8 chr15 33192308 33192670 -52503084 - L1HS LINE L1 0 6155 5793 42425 37 28 1 chr15 33192931 33198248 -52497506 - L1P1 LINE L1 -687 5468 2 346 276 46 7 chr15 33198248 33198390 -52497364 + L1ME3 LINE L1 5699 5837 -324 * 1455 256 92 39 chr15 33198385 33198415 -52497339 - L1 LINE L1 -4732 2305 2278 1838 84 8 42 chr15 33198415 33198677 -52497077 - AluY SINE Alu -10 301 49 1455 256 92 39 chr15 33198677 33199636 -52496118 - L1 LINE L1 -4759 2278 1371 2231 156 43 14 chr15 33199636 33200052 -52495702 - MSTA LTR MaLR 0 428 1 1455 256 92 39 chr15 33200052 33200249 -52495505 - L1 LINE L1 -5666 1371 9 427 261 173 13 chr15 33200282 33200589 -52495165 - LTR37A LTR ERV1 -33 393 38 3948 229 99 23 chr15 33200840 33202223 -52493531 - L1PBa LINE L1 -3717 3145 1653 1647 149 21 14 chr15 33202223 33202511 -52493243 + L1PB3 LINE L1 5855 6144 -10 2229 60 3 0 chr15 33203001 33203283 -52492471 - L1PA7 LINE L1 -5 6149 5867 380 312 24 8 chr15 33203867 33203992 -52491762 + L2 LINE L2 3187 3313 0 333 344 115 34 chr15 33204696 33204846 -52490908 - L1M4 LINE L1 -3381 2765 2629 1138 249 8 0 chr15 33204846 33205083 -52490671 - MER8 DNA MER2_type 0 239 1 333 344 115 34 chr15 33205083 33205348 -52490406 - L1M4 LINE L1 -3517 2629 2316 2044 176 102 127 chr15 33205400 33206116 -52489638 - L1ME1 LINE L1 -12 6154 5457 998 278 41 17 chr15 33206899 33207244 -52488510 - L3 LINE CR1 -439 1138 786 730 166 199 0 chr15 33208206 33208357 -52487397 - L1PB4 LINE L1 -12 6144 5964 2174 140 84 15 chr15 33208357 33208563 -52487191 + L1PB4 LINE L1 5519 5709 -447 2586 139 64 2 chr15 33208563 33209001 -52486753 + MER4C LTR ERV1 1 465 0 2174 140 84 15 chr15 33209001 33209053 -52486701 + L1PB4 LINE L1 5709 5756 -400 270 0 0 0 chr15 33209053 33209083 -52486671 + (CA)n Simple_repeat Simple_repeat 2 31 0 2174 140 84 15 chr15 33209083 33209229 -52486525 + L1PB4 LINE L1 5756 5952 -204 817 298 84 14 chr15 33209343 33209712 -52486042 - L1ME LINE L1 -358 5804 5410 1614 171 46 140 chr15 33209754 33210274 -52485480 - MER67D LTR ERV1 -43 471 1 373 266 98 23 chr15 33210279 33210493 -52485261 - L1ME LINE L1 -769 5377 5148 279 207 49 12 chr15 33210673 33210755 -52484999 - L1ME LINE L1 -1299 4847 4763 33898 72 6 11 chr15 33210910 33216366 -52479388 + L1PA6 LINE L1 727 6153 -1 1229 163 50 10 chr15 33216385 33216764 -52478990 - L1P4 LINE L1 -694 5472 5082 1249 315 157 22 chr15 33216819 33217601 -52478153 + L3 LINE CR1 637 1524 -53 317 331 46 26 chr15 33217697 33217848 -52477906 - MIR3 SINE MIR -10 198 45 242 330 45 28 chr15 33218854 33219030 -52476724 - L1ME LINE L1 -583 5583 5405 208 268 71 18 chr15 33219896 33219952 -52475802 - MIR SINE MIR -58 150 92 393 258 21 0 chr15 33220734 33220827 -52474927 - MER5A DNA MER1_type -85 104 10 26 0 0 0 chr15 33223939 33223965 -52471789 + AT_rich Low_complexity Low_complexity 1 26 0 236 328 74 8 chr15 33224303 33224425 -52471329 + L2 LINE L2 3173 3302 -11 432 294 75 19 chr15 33225985 33226145 -52469609 + MIR SINE MIR 13 181 -81 220 329 24 0 chr15 33226930 33227012 -52468742 + MIR3 SINE MIR 115 198 -10 184 286 0 0 chr15 33227338 33227387 -52468367 - MIR3 SINE MIR 0 208 160 206 160 0 120 chr15 33227816 33227866 -52467888 + L2 LINE L2 3234 3277 -36 205 143 86 0 chr15 33227840 33227875 -52467879 + MIR SINE MIR 207 244 -18 * 480 280 69 15 chr15 33230644 33230987 -52464767 + L1ME LINE L1 1357 1844 -5145 316 346 0 39 chr15 33231011 33231164 -52464590 + MLT1H LTR MaLR 57 203 -346 237 189 0 19 chr15 33231412 33231465 -52464289 + MLT1D LTR MaLR 447 498 -7 331 276 79 33 chr15 33231465 33231617 -52464137 + L1ME LINE L1 2104 2262 -4695 317 200 67 38 chr15 33231717 33231821 -52463933 - L1MB7 LINE L1 0 6184 6071 232 286 27 45 chr15 33231833 33231945 -52463809 - L1MEc LINE L1 -4403 1993 1884 630 236 51 0 chr15 33231978 33232135 -52463619 - L1ME1 LINE L1 -98 6068 5904 1252 185 78 4 chr15 33232135 33232367 -52463387 - MLT1A1 LTR MaLR 0 365 117 1786 194 97 25 chr15 33233543 33233975 -52461779 + L1MB1 LINE L1 4557 5019 -1127 1332 172 76 31 chr15 33233975 33234348 -52461406 + L1MB1 LINE L1 5221 5608 -560 * 6422 95 8 0 chr15 33234343 33235411 -52460343 - L1PA7 LINE L1 -615 5539 4467 4551 68 12 2 chr15 33235411 33236006 -52459748 + L1PA7 LINE L1 5539 6143 -11 1229 139 0 5 chr15 33236060 33236261 -52459493 + L1MB1 LINE L1 5593 5792 -542 2524 221 31 40 chr15 33236264 33236815 -52458939 - MLT2B3 LTR ERVL -7 547 2 2057 136 38 22 chr15 33236815 33237183 -52458571 + L1MB1 LINE L1 5787 6160 -8 266 281 24 54 chr15 33237354 33237521 -52458233 + L1 LINE L1 3863 4024 -2122 237 31 0 0 chr15 33237599 33237631 -52458123 + L1 LINE L1 4677 4708 -1438 2551 156 64 2 chr15 33237646 33238160 -52457594 + L1MA8 LINE L1 5734 6279 -12 264 221 76 38 chr15 33238178 33238336 -52457418 + L1 LINE L1 4255 4418 -1728 346 287 64 25 chr15 33238549 33238778 -52456976 + L1MC/D LINE L1 5272 5514 -648 343 250 33 76 chr15 33239523 33239707 -52456047 + L1MC5 LINE L1 7752 7927 -34 663 213 18 30 chr15 33240701 33240870 -52454884 - MER5A DNA MER1_type -1 188 22 300 303 83 9 chr15 33241118 33241227 -52454527 - L2 LINE L2 -1 3312 3196 302 261 321 0 chr15 33241274 33241408 -52454346 - MER91A DNA MER1_type -1 195 19 2139 58 0 0 chr15 33241416 33241675 -52454079 - AluY SINE Alu -52 259 1 320 261 149 12 chr15 33242057 33242221 -52453533 - L1ME2 LINE L1 -222 5940 5757 470 333 53 12 chr15 33242731 33242902 -52452852 + MER5B DNA MER1_type 1 178 0 251 262 12 12 chr15 33242938 33243022 -52452732 - MLT1L LTR MaLR -2 613 530 790 172 141 6 chr15 33243312 33243475 -52452279 - MER5A DNA MER1_type -3 186 2 1383 69 53 0 chr15 33243519 33243708 -52452046 - L1PA8 LINE L1 -1 6171 5973 1459 212 158 19 chr15 33243806 33244283 -52451471 + MLT1F LTR MaLR 1 542 0 394 233 0 86 chr15 33244663 33244731 -52451023 + MER5A DNA MER1_type 1 57 -132 1236 92 0 6 chr15 33244731 33244904 -52450850 + L1PB1 LINE L1 5978 6149 -2 394 233 0 86 chr15 33244904 33244951 -52450803 + MER5A DNA MER1_type 57 106 -83 473 257 46 26 chr15 33245024 33245176 -52450578 - MER5B DNA MER1_type 0 178 24 658 220 40 17 chr15 33245438 33245611 -52450143 + MER5B DNA MER1_type 1 177 -1 263 335 162 17 chr15 33245961 33246134 -52449620 - MIR SINE MIR -63 199 2 2379 295 63 45 chr15 33246975 33248187 -52447567 + L2 LINE L2 1612 2846 -468 1667 181 84 14 chr15 33248238 33248959 -52446795 + L1MC3 LINE L1 6765 7641 -144 22 56 0 0 chr15 33248970 33249006 -52446748 + AT_rich Low_complexity Low_complexity 1 36 0 648 228 188 0 chr15 33249366 33249515 -52446239 - MER5A DNA MER1_type -11 178 2 297 0 0 0 chr15 33249644 33249677 -52446077 + (A)n Simple_repeat Simple_repeat 1 33 0 560 267 33 22 chr15 33249767 33249947 -52445807 + MLT1L LTR MaLR 424 605 -10 1100 291 25 65 chr15 33249950 33250459 -52445295 + L2 LINE L2 2823 3311 -2 2464 76 0 0 chr15 33250750 33251053 -52444701 - AluY SINE Alu -8 303 1 23 68 0 0 chr15 33251805 33251849 -52443905 + AT_rich Low_complexity Low_complexity 1 44 0 230 156 0 0 chr15 33252055 33252100 -52443654 + A-rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr15 33253423 33253447 -52442307 + AT_rich Low_complexity Low_complexity 1 24 0 2024 206 41 95 chr15 33253551 33254285 -52441469 - LTR8A LTR ERV1 0 727 34 2966 175 78 34 chr15 33254881 33255561 -52440193 + MER67C LTR ERV1 1 710 0 213 108 0 0 chr15 33255774 33255811 -52439943 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 286 241 51 0 chr15 33256370 33256449 -52439305 + MER117 DNA MER1_type 17 99 -98 2435 183 22 10 chr15 33256665 33257163 -52438591 + L1P3 LINE L1 1 504 -5371 23642 148 20 19 chr15 33257180 33259228 -52436526 + L1P3 LINE L1 797 2843 -3644 1714 113 0 4 chr15 33259228 33259458 -52436296 - AluY SINE Alu -22 289 61 23642 148 20 19 chr15 33259458 33260629 -52435125 + L1P3 LINE L1 2843 4012 -2475 369 0 0 0 chr15 33260629 33260670 -52435084 + (CA)n Simple_repeat Simple_repeat 2 42 0 23642 148 20 19 chr15 33260670 33262412 -52433342 + L1P3 LINE L1 4012 5755 -732 16898 31 1 0 chr15 33262516 33264770 -52430984 + L1P2 LINE L1 3284 5539 -616 1240 171 76 31 chr15 33264765 33265138 -52430616 - L1M3 LINE L1 -560 5608 5221 * 1660 194 97 25 chr15 33265138 33265570 -52430184 - L1M3 LINE L1 -1127 5019 4557 1170 185 78 4 chr15 33266741 33266973 -52428781 + MLT1A1 LTR MaLR 117 365 0 583 236 51 0 chr15 33266973 33267130 -52428624 + L1ME1 LINE L1 5904 6068 -98 319 298 24 40 chr15 33267151 33267275 -52428479 + L1MEc LINE L1 1872 1993 -4403 294 195 81 46 chr15 33267287 33267374 -52428380 + L1ME1 LINE L1 6071 6160 -6 349 275 74 34 chr15 33267491 33267662 -52428092 - L1M4b LINE L1 -4695 2279 2086 432 281 46 14 chr15 33268122 33268423 -52427331 - L1M4b LINE L1 -4889 1534 1303 207 143 86 0 chr15 33271234 33271269 -52424485 - MIR SINE MIR -18 244 207 * 210 160 0 120 chr15 33271243 33271293 -52424461 - L2 LINE L2 -36 3277 3234 183 286 0 0 chr15 33271722 33271771 -52423983 + MIR3 SINE MIR 160 208 0 214 329 24 0 chr15 33272097 33272179 -52423575 - MIR3 SINE MIR -10 198 115 432 294 75 19 chr15 33272965 33273125 -52422629 - MIR SINE MIR -81 181 13 239 328 74 8 chr15 33274685 33274807 -52420947 - L2 LINE L2 -11 3302 3173 26 0 0 0 chr15 33275145 33275171 -52420583 + AT_rich Low_complexity Low_complexity 1 26 0 396 258 21 0 chr15 33278284 33278377 -52417377 + MER5A DNA MER1_type 10 104 -85 206 268 71 18 chr15 33279159 33279215 -52416539 + MIR SINE MIR 92 150 -58 366 368 53 10 chr15 33280048 33280257 -52415497 + L1ME LINE L1 5366 5583 -583 321 331 46 26 chr15 33281264 33281415 -52414339 + MIR3 SINE MIR 45 198 -10 1225 318 156 20 chr15 33281511 33282293 -52413461 - L3 LINE CR1 -53 1524 637 1145 163 50 10 chr15 33282348 33282727 -52413027 + L1PA8 LINE L1 5082 5472 -694 6641 74 12 15 chr15 33282746 33283906 -52411848 - L1PA6 LINE L1 -1 6153 4990 192 163 0 0 chr15 33283990 33284033 -52411721 + C-rich Low_complexity Low_complexity 1 43 0 196 230 18 26 chr15 33284061 33284174 -52411580 + CT-rich Low_complexity Low_complexity 1 112 0 2186 149 26 11 chr15 33284284 33284741 -52411013 + L1PA8 LINE L1 5704 6167 -5 34 24 0 0 chr15 33284741 33284782 -52410972 + AT_rich Low_complexity Low_complexity 1 41 0 466 292 35 28 chr15 33285062 33285206 -52410548 - MIR3 SINE MIR -13 195 51 234 62 0 0 chr15 33286970 33287002 -52408752 + (GA)n Simple_repeat Simple_repeat 1 32 0 619 239 0 22 chr15 33287575 33287713 -52408041 + MER58A DNA MER1_type 1 135 0 21 0 0 0 chr15 33288076 33288097 -52407657 + AT_rich Low_complexity Low_complexity 1 21 0 290 242 30 0 chr15 33288147 33288213 -52407541 - L2 LINE L2 0 3313 3246 2155 163 25 50 chr15 33288459 33288896 -52406858 - MSTB LTR MaLR 0 426 1 4521 190 35 3 chr15 33288896 33289775 -52405979 - MSTB-int LTR MaLR 0 1651 745 2714 117 3 16 chr15 33289794 33290161 -52405593 - THE1B LTR MaLR 0 364 3 5424 122 5 5 chr15 33290163 33290924 -52404830 - THE1B-int LTR MaLR 0 1580 820 1888 213 47 18 chr15 33290952 33291398 -52404356 + MLT1C LTR MaLR 9 467 0 233 168 84 11 chr15 33292187 33292282 -52403472 + (TG)n Simple_repeat Simple_repeat 1 102 0 21 0 0 0 chr15 33292911 33292932 -52402822 + AT_rich Low_complexity Low_complexity 1 21 0 365 153 45 6 chr15 33292948 33293105 -52402649 + (TTATA)n Simple_repeat Simple_repeat 5 167 0 303 326 80 17 chr15 33293382 33293557 -52402197 - MIR3 SINE MIR -7 201 16 205 191 11 146 chr15 33294762 33294811 -52400943 - MIR3 SINE MIR -46 162 129 2439 43 7 7 chr15 33294811 33295111 -52400643 + AluY SINE Alu 1 300 -11 205 191 11 146 chr15 33295111 33295150 -52400604 - MIR3 SINE MIR -79 129 86 856 265 90 37 chr15 33295160 33295537 -52400217 - MLT1I LTR MaLR -10 399 3 222 342 13 26 chr15 33295539 33295615 -52400139 - MIR SINE MIR -118 90 16 256 88 0 0 chr15 33296753 33296787 -52398967 + LTR33A LTR ERVL 490 523 0 1661 251 117 41 chr15 33296905 33297738 -52398016 + L2 LINE L2 639 3304 -9 1289 250 128 16 chr15 33297945 33298321 -52397433 + LTR16C LTR ERVL 74 491 0 2922 252 308 66 chr15 33299149 33300729 -52395025 + L2 LINE L2 41 1237 -2076 354 180 33 77 chr15 33300729 33300833 -52394921 - MLT1E1 LTR MaLR -456 198 52 2922 252 308 66 chr15 33300833 33300856 -52394898 + L2 LINE L2 1237 1253 -2060 2671 129 3 3 chr15 33300856 33301220 -52394534 + THE1B LTR MaLR 1 364 0 2922 252 308 66 chr15 33301220 33301924 -52393830 + L2 LINE L2 1253 3038 -275 219 317 0 0 chr15 33302198 33302258 -52393496 - L2 LINE L2 0 3272 3213 270 355 8 16 chr15 33302305 33302429 -52393325 - MIR3 SINE MIR -82 126 4 279 203 0 62 chr15 33302806 33302870 -52392884 - MIR SINE MIR -14 248 189 232 333 177 0 chr15 33304525 33304621 -52391133 - L3 LINE CR1 -2 1575 1463 2737 19 0 3 chr15 33305140 33305447 -52390307 - AluY SINE Alu -5 306 1 24 0 0 0 chr15 33305949 33305973 -52389781 + AT_rich Low_complexity Low_complexity 1 24 0 1772 152 3 28 chr15 33306059 33306349 -52389405 - AluJo SINE Alu -21 291 9 609 302 94 0 chr15 33307053 33307245 -52388509 - MIR SINE MIR -51 211 2 271 371 30 23 chr15 33307258 33307390 -52388364 - L2 LINE L2 -1 3312 3180 710 212 46 131 chr15 33307420 33307703 -52388051 - MIR SINE MIR 0 262 4 312 347 116 16 chr15 33307776 33308018 -52387736 - L2 LINE L2 -189 3083 2818 807 242 74 12 chr15 33308202 33308446 -52387308 + MIR SINE MIR 2 260 -2 2311 57 0 0 chr15 33309483 33309809 -52385945 + AluY SINE Alu 1 326 0 1200 91 13 0 chr15 33309809 33309986 -52385768 + AluSg/x SINE Alu 128 306 0 225 94 0 0 chr15 33310309 33310341 -52385413 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1118 88 13 19 chr15 33310341 33310523 -52385231 + AluSg/x SINE Alu 124 304 0 525 216 24 8 chr15 33310776 33310901 -52384853 - MER20 DNA MER1_type -2 217 91 536 159 21 97 chr15 33310906 33311051 -52384703 + MLT1C LTR MaLR 6 139 -328 2684 134 29 2 chr15 33311065 33311554 -52384200 - L1MA9 LINE L1 -609 5682 5184 2208 156 13 23 chr15 33311559 33311648 -52384106 + L1MA9 LINE L1 5701 5789 -523 351 0 0 0 chr15 33311648 33311687 -52384067 + (CA)n Simple_repeat Simple_repeat 2 40 0 2208 156 13 23 chr15 33311687 33311982 -52383772 + L1MA9 LINE L1 5789 6081 -231 432 202 11 0 chr15 33311988 33312077 -52383677 + L1MA9 LINE L1 6184 6273 -39 1098 174 128 114 chr15 33312105 33312456 -52383298 + MLT1C LTR MaLR 112 467 0 577 143 0 0 chr15 33312461 33312545 -52383209 - MER20 DNA MER1_type -135 84 1 535 293 57 45 chr15 33313072 33313532 -52382222 - L1M2 LINE L1 -1194 4952 4487 1407 150 66 51 chr15 33313610 33313884 -52381870 + AluSx SINE Alu 14 291 -21 372 249 81 69 chr15 33314592 33314765 -52380989 + L2 LINE L2 2886 3060 -212 25 31 0 0 chr15 33314849 33314881 -52380873 + AT_rich Low_complexity Low_complexity 1 32 0 314 336 32 24 chr15 33314950 33315075 -52380679 + L2 LINE L2 3116 3241 -31 1789 149 0 49 chr15 33315096 33315404 -52380350 + AluJb SINE Alu 1 293 -19 266 73 24 0 chr15 33315444 33315485 -52380269 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 22 103 0 0 chr15 33316129 33316207 -52379547 + AT_rich Low_complexity Low_complexity 1 78 0 309 109 0 0 chr15 33317116 33317162 -52378592 + (CA)n Simple_repeat Simple_repeat 2 47 0 1225 163 19 116 chr15 33317698 33318017 -52377737 + AluJo SINE Alu 5 292 -20 49 18 0 0 chr15 33318041 33318097 -52377657 + AT_rich Low_complexity Low_complexity 1 56 0 186 213 81 125 chr15 33319572 33319708 -52376046 - L2 LINE L2 -1076 2238 2109 758 278 50 21 chr15 33320190 33320431 -52375323 + MIR SINE MIR 1 248 -14 309 356 106 15 chr15 33320802 33320934 -52374820 - MIR3 SINE MIR -54 154 11 1120 181 25 0 chr15 33321547 33321751 -52374003 + L1MD2 LINE L1 6150 6358 -1 298 217 72 12 chr15 33321877 33321960 -52373794 - MIR SINE MIR -93 169 82 528 295 125 36 chr15 33321965 33322189 -52373565 + LTR67 LTR ERVL 2 245 -312 373 266 38 25 chr15 33322304 33322462 -52373292 + LTR67 LTR ERVL 394 553 -4 2095 183 19 22 chr15 33324706 33325072 -52370682 + MLT1A1 LTR MaLR 1 365 0 256 272 49 0 chr15 33325269 33325350 -52370404 + L2 LINE L2 662 746 -2568 428 286 29 29 chr15 33325772 33325947 -52369807 - MIR3 SINE MIR -9 199 25 195 255 20 0 chr15 33326233 33326284 -52369470 - MER5A DNA MER1_type 0 189 138 195 42 0 0 chr15 33326529 33326553 -52369201 + (TCTA)n Simple_repeat Simple_repeat 1 24 0 6131 109 30 24 chr15 33326582 33327655 -52368099 - L1PA13 LINE L1 -4 6159 5070 314 304 0 22 chr15 33327786 33327878 -52367876 + L1MC4 LINE L1 6614 6703 -1339 * 322 227 45 23 chr15 33327820 33327908 -52367846 - L1MC4 LINE L1 -1339 6703 6614 2033 107 17 10 chr15 33327912 33328201 -52367553 - AluSc SINE Alu -18 291 1 1396 150 41 59 chr15 33328468 33328807 -52366947 - L1MA4A LINE L1 -245 6760 6428 * 3840 174 38 3 chr15 33328806 33329552 -52366202 - L1MA4A LINE L1 -780 6068 5297 * 11675 207 66 17 chr15 33329533 33330175 -52365579 - L1MA4A LINE L1 -4100 2749 2140 1644 201 7 3 chr15 33330175 33330469 -52365285 - AluJb SINE Alu -17 295 1 11675 207 66 17 chr15 33330469 33332445 -52363309 - L1MA4A LINE L1 -4709 2140 4 265 266 156 23 chr15 33332579 33332752 -52363002 - MIR3 SINE MIR -5 203 8 689 340 84 60 chr15 33333286 33333689 -52362065 - L2 LINE L2 0 3272 2860 792 335 118 30 chr15 33334426 33335259 -52360495 + L2 LINE L2 2374 3272 0 3955 183 67 8 chr15 33335396 33336176 -52359578 - L1MB8 LINE L1 0 6178 5353 1257 156 26 136 chr15 33336958 33337297 -52358457 + AluJo SINE Alu 11 312 0 211 308 217 0 chr15 33337921 33338041 -52357713 + MIR SINE MIR 61 206 -56 186 374 116 13 chr15 33338839 33338994 -52356760 - L2 LINE L2 -5 3267 3097 2197 115 0 3 chr15 33339611 33339906 -52355848 - AluSx SINE Alu -18 294 1 260 228 164 95 chr15 33340429 33340618 -52355136 + MLT1J LTR MaLR 287 488 -23 2762 246 123 0 chr15 33340627 33341418 -52354336 + L2 LINE L2 1880 2767 -547 1231 229 110 48 chr15 33341516 33342080 -52353674 - L1MC4 LINE L1 0 8042 7444 551 269 113 60 chr15 33342731 33343181 -52352573 - L1ME LINE L1 -330 5791 5318 891 223 141 61 chr15 33343859 33344186 -52351568 + MLT1A1 LTR MaLR 13 365 0 390 294 88 22 chr15 33344229 33344365 -52351389 + L2 LINE L2 3127 3271 -1 223 242 132 33 chr15 33345160 33345251 -52350503 - MIR3 SINE MIR -2 206 107 2196 192 129 2 chr15 33345615 33346063 -52349691 + MLT1D LTR MaLR 1 505 0 248 312 56 68 chr15 33346163 33346413 -52349341 + L2 LINE L2 2882 3128 -144 4591 180 40 21 chr15 33346552 33347254 -52348500 - L1MB3 LINE L1 0 6183 5440 486 96 0 0 chr15 33347254 33347327 -52348427 + (TAG)n Simple_repeat Simple_repeat 3 75 0 4591 180 40 21 chr15 33347327 33347876 -52347878 - L1MB3 LINE L1 -743 5440 4903 2130 81 36 36 chr15 33348650 33348957 -52346797 - AluSg SINE Alu -3 307 1 229 89 44 0 chr15 33350093 33350138 -52345616 + (TA)n Simple_repeat Simple_repeat 1 47 0 243 0 0 0 chr15 33350139 33350166 -52345588 + (GA)n Simple_repeat Simple_repeat 2 28 0 343 289 21 42 chr15 33350316 33350458 -52345296 + MIR SINE MIR 2 140 -122 3732 259 58 53 chr15 33350652 33351294 -52344460 + L1ME1 LINE L1 41 678 -5718 404 84 0 0 chr15 33351294 33351365 -52344389 + L1MA7 LINE L1 6221 6291 0 3732 259 58 53 chr15 33351365 33352310 -52343444 + L1ME1 LINE L1 678 1636 -4760 23611 46 44 2 chr15 33352317 33355318 -52340436 + L1P LINE L1 2 3126 -3020 31625 49 14 2 chr15 33355431 33355521 -52340233 + L1PA8A LINE L1 1310 1397 -4734 180 0 0 0 chr15 33355521 33355541 -52340213 + (AAATG)n Simple_repeat Simple_repeat 5 24 0 31625 49 14 2 chr15 33355541 33359858 -52335896 + L1PA8A LINE L1 1397 5766 -365 4517 12 2 0 chr15 33359958 33360476 -52335278 + L1PA2 LINE L1 5634 6152 -3 2019 224 63 73 chr15 33360479 33361390 -52334364 + L1ME1 LINE L1 1621 2521 -3875 2471 223 43 21 chr15 33361534 33361943 -52333811 + L1ME1 LINE L1 2480 2913 -3302 1335 220 10 20 chr15 33361943 33362247 -52333507 + AluJo SINE Alu 1 301 -11 2471 223 43 21 chr15 33362247 33362565 -52333189 + L1ME1 LINE L1 2913 3223 -2992 * 3130 191 27 95 chr15 33362560 33363498 -52332256 + L1MA9 LINE L1 5396 6269 -43 22 0 0 0 chr15 33363505 33363527 -52332227 + AT_rich Low_complexity Low_complexity 1 22 0 1209 251 64 6 chr15 33363536 33364006 -52331748 + L1ME1 LINE L1 3210 3706 -2509 384 98 0 0 chr15 33364019 33364080 -52331674 - L1PA16 LINE L1 -9 6157 6097 313 118 0 39 chr15 33364081 33364132 -52331622 - L1PA16 LINE L1 -107 6059 6011 3257 227 105 40 chr15 33364228 33364936 -52330818 + L1ME1 LINE L1 4355 5016 -1219 1600 195 3 3 chr15 33364936 33365234 -52330520 + AluJo SINE Alu 1 298 -14 3257 227 105 40 chr15 33365234 33366244 -52329510 + L1ME1 LINE L1 5016 6191 -44 1466 203 37 69 chr15 33366971 33367346 -52328408 + L1MDa LINE L1 19 381 -6159 10375 177 20 43 chr15 33367365 33370101 -52325653 + L1PB1 LINE L1 2698 5495 -656 5131 36 2 2 chr15 33370101 33370714 -52325040 + L1PA3 LINE L1 5540 6152 -3 10375 177 20 43 chr15 33370714 33371147 -52324607 + L1PB1 LINE L1 5495 5796 -355 183 80 0 0 chr15 33371147 33371172 -52324582 + (TA)n Simple_repeat Simple_repeat 1 25 0 10375 177 20 43 chr15 33371172 33371521 -52324233 + L1PB1 LINE L1 5796 6151 0 1417 256 100 49 chr15 33371531 33372145 -52323609 + L1MDa LINE L1 393 1121 -5419 * 4529 171 47 23 chr15 33372123 33373392 -52322362 + L1MB2 LINE L1 5269 6563 -2 1419 148 22 30 chr15 33373469 33373544 -52322210 - L1MC/D LINE L1 -681 5561 5487 1355 84 59 5 chr15 33373544 33373746 -52322008 - L1PA8 LINE L1 -3 6169 5957 1419 148 22 30 chr15 33373746 33373940 -52321814 - L1MC/D LINE L1 -755 5487 5294 4543 97 29 5 chr15 33375169 33375797 -52319957 + THE1B-int LTR MaLR 938 1580 0 2812 85 0 0 chr15 33375797 33376161 -52319593 + THE1B LTR MaLR 1 364 0 206 279 98 16 chr15 33376319 33376380 -52319374 - L2 LINE L2 -86 3186 3121 185 359 109 16 chr15 33376549 33376741 -52319013 - L2 LINE L2 -21 3292 3083 779 110 37 22 chr15 33377073 33377209 -52318545 - L1PA7 LINE L1 0 6154 6017 3973 47 0 0 chr15 33377249 33377734 -52318020 - L1PA4 LINE L1 -3 6152 5668 661 165 6 37 chr15 33377734 33377892 -52317862 - L1PA8 LINE L1 -106 6066 5914 312 283 108 18 chr15 33378008 33378174 -52317580 - L1MC4a LINE L1 -1894 5914 5734 1263 279 73 22 chr15 33378177 33378586 -52317168 + MLT1J2 LTR MaLR 7 436 -14 671 205 114 23 chr15 33378629 33378945 -52316809 + MER92B LTR ERV1 7 392 -244 282 260 0 14 chr15 33379436 33379509 -52316245 + L2 LINE L2 3241 3312 -1 212 182 26 156 chr15 33379988 33380065 -52315689 + MIR3 SINE MIR 131 197 -11 914 280 85 20 chr15 33380162 33380562 -52315192 + LTR16A LTR ERVL 25 450 0 247 295 26 0 chr15 33380598 33380676 -52315078 + MARNA DNA Mariner 455 534 -52 577 265 33 105 chr15 33381478 33381693 -52314061 + LTR16C LTR ERVL 155 335 -156 2961 3 0 0 chr15 33381693 33382011 -52313743 - AluYb8 SINE Alu 0 318 1 577 265 33 105 chr15 33382011 33382157 -52313597 + LTR16C LTR ERVL 335 490 -1 267 288 113 12 chr15 33382281 33382361 -52313393 - L2 LINE L2 -48 3224 3137 21 57 0 0 chr15 33382611 33382646 -52313108 + AT_rich Low_complexity Low_complexity 1 35 0 184 172 35 0 chr15 33382655 33382713 -52313041 + (TA)n Simple_repeat Simple_repeat 2 61 0 457 271 37 5 chr15 33382755 33382943 -52312811 + L1MC4a LINE L1 6073 6266 -1542 2255 249 109 72 chr15 33383186 33384475 -52311279 + L1MC4 LINE L1 6705 8040 -2 231 333 108 0 chr15 33385037 33385139 -52310615 - MIR3 SINE MIR -32 176 64 333 217 0 0 chr15 33385180 33385240 -52310514 + MIR SINE MIR 64 123 -139 775 213 40 13 chr15 33385850 33386075 -52309679 + L1ME1 LINE L1 5724 5954 -212 228 29 29 0 chr15 33386075 33386109 -52309645 - MSTB1 LTR MaLR -24 408 374 * 258 54 27 0 chr15 33386107 33386144 -52309610 + MSTB1 LTR MaLR 395 432 0 296 197 127 0 chr15 33386153 33386224 -52309530 - L1ME1 LINE L1 -133 6033 5954 2156 144 45 0 chr15 33386224 33386577 -52309177 - MSTB1 LTR MaLR -63 369 1 449 242 17 8 chr15 33386579 33386699 -52309055 + L1ME1 LINE L1 6040 6160 -6 9070 35 1 0 chr15 33386723 33387971 -52307783 - L1PA5 LINE L1 -629 5525 4276 5103 39 0 2 chr15 33387971 33388576 -52307178 + L1PA5 LINE L1 5536 6143 -11 2163 112 7 0 chr15 33389121 33389416 -52306338 + AluSx SINE Alu 3 299 -13 288 53 0 0 chr15 33389523 33389561 -52306193 + (GA)n Simple_repeat Simple_repeat 2 39 0 311 297 167 16 chr15 33389614 33389687 -52306067 - L1M4 LINE L1 -2411 3735 3674 1224 160 0 9 chr15 33389687 33389906 -52305848 + L1PB4 LINE L1 5940 6156 0 311 297 167 16 chr15 33389906 33390024 -52305730 - L1M4 LINE L1 -2472 3674 3515 31 44 0 0 chr15 33390137 33390182 -52305572 + AT_rich Low_complexity Low_complexity 1 45 0 697 288 79 71 chr15 33392129 33392609 -52303145 + L2 LINE L2 2829 3312 -1 280 279 29 10 chr15 33392697 33392801 -52302953 + GA-rich Low_complexity Low_complexity 2 107 0 749 273 88 4 chr15 33393449 33393687 -52302067 + MIR SINE MIR 1 258 -4 2536 71 122 6 chr15 33396164 33396500 -52299254 - THE1C LTR MaLR 0 375 1 2375 157 86 0 chr15 33396715 33397109 -52298645 + MSTA LTR MaLR 1 428 0 4038 175 9 0 chr15 33397109 33397807 -52297947 + MSTA-int LTR MaLR 1 704 -947 244 199 27 9 chr15 33397807 33397907 -52297847 + Alu SINE Alu 248 316 0 210 118 0 0 chr15 33399409 33399443 -52296311 + (T)n Simple_repeat Simple_repeat 1 34 0 274 280 67 0 chr15 33400485 33400560 -52295194 - L2 LINE L2 -36 3236 3157 266 329 114 26 chr15 33400826 33401054 -52294700 - L2 LINE L2 -1275 2039 1792 435 202 211 0 chr15 33401373 33401487 -52294267 + MER104 DNA Tc2 38 175 -5 2292 80 7 13 chr15 33401614 33401915 -52293839 + AluSx SINE Alu 1 299 -13 489 296 34 34 chr15 33401935 33402055 -52293699 + MER5A DNA MER1_type 10 132 -57 1561 191 3 26 chr15 33402055 33402358 -52293396 + AluJo SINE Alu 1 296 -16 489 296 34 34 chr15 33402358 33402416 -52293338 + MER5A DNA MER1_type 131 188 -1 368 273 34 0 chr15 33403652 33403740 -52292014 - LTR16C LTR ERVL -14 477 387 1349 224 84 6 chr15 33403812 33404147 -52291607 + LTR16A LTR ERVL 89 449 -1 964 259 148 14 chr15 33404148 33404438 -52291316 - LTR16C LTR ERVL -111 380 52 289 256 136 24 chr15 33404638 33404763 -52290991 - MIR SINE MIR -4 258 120 3998 143 95 5 chr15 33404857 33405520 -52290234 - L1PA8 LINE L1 -5 6167 5445 1483 163 23 47 chr15 33406815 33407116 -52288638 - AluJo SINE Alu -18 294 1 192 152 0 0 chr15 33407840 33407873 -52287881 + A-rich Low_complexity Low_complexity 1 33 0 5228 18 0 0 chr15 33407960 33408520 -52287234 + L1PA3 LINE L1 5593 6152 -3 2095 122 0 29 chr15 33409504 33409816 -52285938 - AluSx SINE Alu -9 303 1 290 25 0 25 chr15 33409838 33409855 -52285899 + (CA)n Simple_repeat Simple_repeat 1 55 0 290 25 0 25 chr15 33409855 33409895 -52285859 + (CA)n Simple_repeat Simple_repeat 2 40 0 1984 127 3 17 chr15 33410340 33410640 -52285114 + AluJo SINE Alu 1 296 -16 325 353 104 30 chr15 33410859 33411253 -52284501 + L2 LINE L2 1698 2120 -1194 565 300 89 4 chr15 33411373 33411620 -52284134 + LTR16C LTR ERVL 224 491 0 494 354 49 30 chr15 33411624 33412096 -52283658 + L2 LINE L2 2143 2623 -691 683 216 8 93 chr15 33412100 33412256 -52283498 + MIR SINE MIR 6 137 -125 2346 84 10 16 chr15 33412256 33412567 -52283187 + AluY SINE Alu 1 309 -2 683 216 8 93 chr15 33412567 33412646 -52283108 + MIR SINE MIR 137 221 -41 6345 118 5 2 chr15 33412647 33413146 -52282608 + L1PA13 LINE L1 4776 5272 -891 2006 132 7 3 chr15 33413146 33413433 -52282321 + AluSx SINE Alu 1 288 -24 6345 118 5 2 chr15 33413433 33414331 -52281423 + L1PA13 LINE L1 5272 6163 0 270 194 42 28 chr15 33414570 33414642 -52281112 - MER116 DNA Mariner -7 73 1 1745 173 3 13 chr15 33415937 33416237 -52279517 - AluJo SINE Alu -15 297 1 318 169 292 11 chr15 33416457 33416546 -52279208 - MER81 DNA DNA 0 114 1 1371 164 14 5 chr15 33417517 33417731 -52278023 + MER20 DNA MER1_type 4 219 0 1988 66 8 0 chr15 33417954 33418195 -52277559 + L1PA7 LINE L1 5912 6154 0 378 74 0 0 chr15 33420098 33420152 -52275602 + (TA)n Simple_repeat Simple_repeat 1 54 0 225 258 237 41 chr15 33420323 33420420 -52275334 + MIR SINE MIR 31 146 -62 568 254 12 17 chr15 33420422 33420595 -52275159 + MER117 DNA MER1_type 4 175 -22 358 234 21 76 chr15 33420657 33420691 -52275063 - L1M4c LINE L1 -4791 2168 2134 213 65 0 0 chr15 33420691 33420722 -52275032 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 1849 122 42 0 chr15 33420728 33420991 -52274763 - AluSx SINE Alu -38 274 1 358 234 21 76 chr15 33420991 33421094 -52274660 - L1M4c LINE L1 -4830 2129 2032 2963 127 97 25 chr15 33421094 33421226 -52274528 - L1MA9 LINE L1 0 6312 6191 246 62 0 0 chr15 33421226 33421258 -52274496 + (TG)n Simple_repeat Simple_repeat 1 32 0 2963 127 97 25 chr15 33421258 33421684 -52274070 - L1MA9 LINE L1 -121 6191 5714 2679 214 62 56 chr15 33421709 33422657 -52273097 + MER21B LTR ERV1 9 862 -1 1517 145 17 0 chr15 33422665 33422906 -52272848 - L1MA9 LINE L1 -586 5726 5482 712 218 34 0 chr15 33422895 33423074 -52272680 - L1M4c LINE L1 -4896 2063 1879 * 6296 204 101 53 chr15 33423181 33424961 -52270793 - L1M4c LINE L1 -4985 1870 11 687 97 10 19 chr15 33425722 33425825 -52269929 + L1PA7 LINE L1 3 104 -6357 * 31657 102 12 26 chr15 33425813 33428184 -52267570 + L1PA7 LINE L1 427 2829 -3640 2745 22 0 10 chr15 33428184 33428496 -52267258 - AluYb8 SINE Alu -9 309 1 31657 102 12 26 chr15 33428496 33431488 -52264266 + L1PA7 LINE L1 2829 5795 -674 2247 112 3 0 chr15 33431488 33431782 -52263972 + AluSg SINE Alu 1 295 -15 31657 102 12 26 chr15 33431782 33432446 -52263308 + L1PA7 LINE L1 5795 6467 -2 2032 191 8 14 chr15 33432672 33433039 -52262715 + MLT1A1 LTR MaLR 1 365 0 240 333 69 0 chr15 33433565 33433637 -52262117 - L2 LINE L2 -43 3229 3153 42037 61 5 2 chr15 33433667 33439796 -52255958 + L1PA5 LINE L1 11 6154 0 180 152 0 0 chr15 33439843 33439876 -52255878 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 2405 183 38 32 chr15 33440885 33441387 -52254367 + MLT1D LTR MaLR 1 505 0 203 207 118 96 chr15 33442065 33442200 -52253554 - MIR SINE MIR -60 202 65 486 88 0 0 chr15 33442804 33442872 -52252882 + (CATATA)n Simple_repeat Simple_repeat 4 71 0 888 130 37 74 chr15 33442872 33443011 -52252743 + MER20 DNA MER1_type 64 198 -21 1797 163 7 17 chr15 33443011 33443311 -52252443 + AluJb SINE Alu 1 297 -15 888 130 37 74 chr15 33443311 33443333 -52252421 + MER20 DNA MER1_type 198 219 0 742 235 59 110 chr15 33443463 33443614 -52252140 - MIR SINE MIR -1 261 129 2323 128 0 0 chr15 33443614 33443927 -52251827 + AluSq SINE Alu 1 313 0 742 235 59 110 chr15 33443927 33444047 -52251707 - MIR SINE MIR -133 129 4 544 229 34 50 chr15 33444389 33444568 -52251186 - MER69A DNA AcHobo -1 176 1 332 156 0 16 chr15 33445212 33445276 -52250478 + HAL1 LINE L1 1598 1660 -847 5694 123 9 9 chr15 33446089 33446372 -52249382 + L1PA15 LINE L1 4374 4656 -1509 2117 122 3 3 chr15 33446372 33446660 -52249094 + AluSx SINE Alu 1 288 -24 5694 123 9 9 chr15 33446660 33448177 -52247577 + L1PA15 LINE L1 4655 6162 -3 472 269 131 7 chr15 33448240 33448385 -52247369 + MIR3 SINE MIR 36 198 -10 9028 167 31 35 chr15 33448963 33450962 -52244792 + L1MA7 LINE L1 3313 5320 -971 2373 71 10 7 chr15 33450962 33451272 -52244482 - AluY SINE Alu 0 311 1 9028 167 31 35 chr15 33451272 33451520 -52244234 + L1MA7 LINE L1 5316 5564 -723 1525 142 61 45 chr15 33451520 33451850 -52243904 + L1MA7 LINE L1 5946 6280 -11 4360 43 2 2 chr15 33452679 33453216 -52242538 + L1PA4 LINE L1 5617 6153 -2 385 308 8 22 chr15 33453856 33454045 -52241709 + MIR SINE MIR 24 206 -56 266 152 22 0 chr15 33455746 33455792 -52239962 - L2 LINE L2 0 3313 3267 182 206 29 0 chr15 33455764 33455798 -52239956 - MIR SINE MIR -13 249 215 * 288 330 0 18 chr15 33455977 33456086 -52239668 - MIR SINE MIR -125 137 31 1987 103 80 20 chr15 33456504 33456854 -52238900 - THE1C LTR MaLR -2 373 3 350 281 165 6 chr15 33456889 33457053 -52238701 + MLT1K LTR MaLR 171 360 -228 351 214 34 43 chr15 33457113 33457230 -52238524 + MLT1K LTR MaLR 466 581 -7 375 224 132 17 chr15 33457244 33457418 -52238336 - Charlie7 DNA MER1_type -1 2611 2418 310 230 30 20 chr15 33457390 33457490 -52238264 - Charlie7 DNA MER1_type -2510 102 2 * 21 0 0 0 chr15 33457646 33457667 -52238087 + AT_rich Low_complexity Low_complexity 1 21 0 361 279 139 24 chr15 33458659 33458824 -52236930 - MIR SINE MIR -58 204 21 546 167 107 130 chr15 33459104 33459182 -52236572 - MER33 DNA MER1_type -2289 296 218 1857 120 10 17 chr15 33459182 33459473 -52236281 - AluJb SINE Alu -23 289 1 546 167 107 130 chr15 33459473 33459693 -52236061 - MER33 DNA MER1_type -2367 218 5 231 267 50 25 chr15 33459992 33460112 -52235642 + L1ME LINE L1 5762 5884 -286 1925 112 0 32 chr15 33460427 33460712 -52235042 - AluSx SINE Alu 0 312 37 342 181 6 17 chr15 33461178 33461265 -52234489 + L1MC4 LINE L1 7909 8040 0 2420 81 3 3 chr15 33461536 33461843 -52233911 - AluSp SINE Alu -6 307 1 1084 213 0 14 chr15 33463574 33463795 -52231959 - MER20 DNA MER1_type 0 219 2 273 229 119 0 chr15 33463941 33464050 -52231704 - L1ME LINE L1 -382 5739 5618 440 238 95 24 chr15 33464143 33464269 -52231485 + L2 LINE L2 3179 3313 0 1971 138 10 14 chr15 33464462 33464758 -52230996 + AluSq SINE Alu 6 300 -13 1041 238 147 25 chr15 33465141 33465494 -52230260 - MSTD LTR MaLR 0 396 1 748 272 6 0 chr15 33466119 33466288 -52229466 - MER5B DNA MER1_type 0 178 9 673 172 43 0 chr15 33466541 33466657 -52229097 + AluJb SINE Alu 171 291 -21 182 269 0 0 chr15 33466952 33467004 -52228750 + L2 LINE L2 3262 3313 0 239 222 0 122 chr15 33467353 33467443 -52228311 - L2 LINE L2 -12 3260 3182 * 346 342 118 0 chr15 33467432 33467593 -52228161 + MIR SINE MIR 35 214 -48 195 253 114 25 chr15 33467610 33467689 -52228065 - MIR SINE MIR -71 191 106 1584 189 4 4 chr15 33467755 33468030 -52227724 - AluJo SINE Alu -31 281 7 223 270 130 30 chr15 33469004 33469104 -52226650 - L2 LINE L2 0 3272 3163 511 226 58 32 chr15 33470068 33470223 -52225531 - MIR SINE MIR -2 260 102 212 194 143 82 chr15 33470344 33470442 -52225312 + MIR SINE MIR 77 180 -82 1078 172 5 54 chr15 33470677 33470898 -52224856 + AluJb SINE Alu 85 294 -18 589 214 166 70 chr15 33472791 33473020 -52222734 - MIR SINE MIR -6 256 6 268 179 317 57 chr15 33473318 33473441 -52222313 + MER5A DNA MER1_type 34 188 -1 249 307 93 0 chr15 33474247 33474322 -52221432 + L2 LINE L2 3231 3312 -1 3729 192 96 24 chr15 33474620 33475726 -52220028 + L1MC4 LINE L1 6828 7995 0 981 184 60 0 chr15 33476403 33476653 -52219101 - MER33 DNA MER1_type 0 324 60 2534 212 81 23 chr15 33476714 33477463 -52218291 + L1MC4 LINE L1 7250 8042 0 462 250 20 0 chr15 33477464 33477564 -52218190 + MER5A DNA MER1_type 8 109 -80 2721 126 14 5 chr15 33477890 33478334 -52217420 + L1PB3 LINE L1 5707 6154 0 26 50 0 0 chr15 33478343 33478383 -52217371 + AT_rich Low_complexity Low_complexity 1 40 0 215 224 0 92 chr15 33478955 33479031 -52216723 + L2 LINE L2 3161 3229 -43 2223 104 0 7 chr15 33479341 33479649 -52216105 + AluSx SINE Alu 1 306 -6 1086 77 36 6 chr15 33479984 33480152 -52215602 - MER30 DNA MER1_type -57 173 1 2278 108 0 7 chr15 33480398 33480705 -52215049 + AluSx SINE Alu 2 306 -6 242 29 29 0 chr15 33480822 33480857 -52214897 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 269 182 15 15 chr15 33481818 33481884 -52213870 - MER116 DNA Mariner 0 80 15 224 305 143 9 chr15 33484641 33484746 -52211008 - L2 LINE L2 -4 3268 3150 315 0 0 0 chr15 33485235 33485270 -52210484 + (CA)n Simple_repeat Simple_repeat 2 36 0 1083 162 20 25 chr15 33485280 33485477 -52210277 + AluJb SINE Alu 108 303 -9 243 299 104 52 chr15 33486316 33486450 -52209304 - MER5A DNA MER1_type -48 141 1 562 244 50 44 chr15 33488073 33488253 -52207501 + L2 LINE L2 3118 3298 -15 307 226 53 83 chr15 33488396 33488529 -52207225 - L1ME LINE L1 -486 5618 5490 364 277 129 7 chr15 33488545 33488700 -52207054 - L1ME LINE L1 -2337 5454 5281 1883 113 42 42 chr15 33489179 33489532 -52206222 - THE1B LTR MaLR -11 353 1 877 295 60 64 chr15 33490174 33490981 -52204773 - L1ME LINE L1 -4862 1257 455 2347 91 0 7 chr15 33490999 33491308 -52204446 + AluSg1 SINE Alu 1 307 -2 397 259 71 94 chr15 33491380 33491677 -52204077 - L1ME LINE L1 -5825 294 5 2048 132 7 0 chr15 33491803 33492098 -52203656 - AluSx SINE Alu -15 297 1 998 230 72 122 chr15 33492266 33492792 -52202962 - L2 LINE L2 0 3313 2814 2118 70 92 0 chr15 33492969 33493242 -52202512 - AluSp SINE Alu -15 298 1 2428 52 3 26 chr15 33493847 33494156 -52201598 - AluY SINE Alu -9 302 1 600 130 0 46 chr15 33494361 33494469 -52201285 - L1PB4 LINE L1 -1 6155 6053 1934 131 25 0 chr15 33496368 33496651 -52199103 + AluSx SINE Alu 1 290 -22 1730 139 46 4 chr15 33496795 33497076 -52198678 - AluJb SINE Alu -19 293 1 658 299 55 10 chr15 33497133 33497740 -52198014 + L1ME LINE L1 5014 5655 -496 774 254 34 34 chr15 33497970 33498106 -52197648 + MER3 DNA MER1_type 1 139 -70 1752 148 95 0 chr15 33498106 33498390 -52197364 - AluSx SINE Alu -1 311 1 774 254 34 34 chr15 33498390 33498462 -52197292 + MER3 DNA MER1_type 138 209 0 225 256 151 0 chr15 33498513 33498599 -52197155 + L1M2 LINE L1 5700 5798 -502 1151 288 69 33 chr15 33498767 33499347 -52196407 - MLT1L LTR MaLR -14 601 1 2489 187 36 4 chr15 33499444 33499999 -52195755 - L1MA4 LINE L1 0 6300 5728 287 244 0 11 chr15 33500213 33500303 -52195451 + (TA)n Simple_repeat Simple_repeat 2 90 0 235 264 0 22 chr15 33500315 33500406 -52195348 + L1MC4 LINE L1 6615 6703 -1339 495 293 0 0 chr15 33500413 33500587 -52195167 + (TA)n Simple_repeat Simple_repeat 1 174 0 228 247 59 0 chr15 33500590 33500675 -52195079 + L1MC4 LINE L1 6614 6703 -1339 183 239 0 0 chr15 33500685 33500731 -52195023 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 5828 144 22 38 chr15 33500737 33502169 -52193585 - L1M1 LINE L1 -660 5645 4240 242 304 0 0 chr15 33502205 33502261 -52193493 - MIR SINE MIR -142 120 65 180 0 0 0 chr15 33502461 33502481 -52193273 + (T)n Simple_repeat Simple_repeat 1 20 0 491 262 131 30 chr15 33502592 33502829 -52192925 - MIR SINE MIR 0 262 2 2348 67 7 3 chr15 33503035 33503332 -52192422 - AluY SINE Alu -13 298 1 3657 126 2 11 chr15 33503966 33504498 -52191256 + MER1A DNA MER1_type 1 527 0 2365 64 0 0 chr15 33504658 33504965 -52190789 + AluY SINE Alu 1 307 0 2666 14 0 0 chr15 33505874 33506169 -52189585 + AluY SINE Alu 1 295 -16 2221 79 55 0 chr15 33506183 33506475 -52189279 + AluSx SINE Alu 1 308 -4 663 229 122 5 chr15 33506483 33506688 -52189066 + MIR SINE MIR 31 259 -3 2006 124 13 7 chr15 33506755 33507053 -52188701 + AluSx SINE Alu 1 300 -12 25 31 0 0 chr15 33507131 33507163 -52188591 + AT_rich Low_complexity Low_complexity 1 32 0 2145 124 10 16 chr15 33507883 33508197 -52187557 + AluSx SINE Alu 1 312 0 23 0 0 0 chr15 33508424 33508447 -52187307 + AT_rich Low_complexity Low_complexity 1 23 0 589 217 171 0 chr15 33509459 33509611 -52186143 + MER5A DNA MER1_type 9 186 -3 290 24 48 0 chr15 33510230 33510272 -52185482 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2254 86 0 10 chr15 33510274 33510564 -52185190 - AluSq SINE Alu -26 287 1 1047 194 103 15 chr15 33510856 33511185 -52184569 + MLT2F LTR ERVL 302 659 -4 256 298 24 36 chr15 33511191 33511275 -52184479 - MER5B DNA MER1_type -73 105 23 225 0 0 0 chr15 33512045 33512070 -52183684 + (CTG)n Simple_repeat Simple_repeat 2 26 0 2177 120 0 22 chr15 33512281 33512597 -52183157 + AluSg SINE Alu 1 309 -1 183 156 0 0 chr15 33513343 33513375 -52182379 + (CA)n Simple_repeat Simple_repeat 1 32 0 211 351 14 0 chr15 33514092 33514166 -52181588 + L2 LINE L2 2878 2952 -320 851 209 45 6 chr15 33514301 33514476 -52181278 + MIR SINE MIR 17 198 -64 860 249 16 0 chr15 33514476 33514661 -52181093 + MER5A DNA MER1_type 1 188 -1 300 70 0 0 chr15 33515569 33515612 -52180142 + (TG)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr15 33515619 33515641 -52180113 + AT_rich Low_complexity Low_complexity 1 22 0 2078 94 19 16 chr15 33515647 33515954 -52179800 + AluSq SINE Alu 1 308 -5 204 310 35 53 chr15 33516655 33516768 -52178986 + MIR SINE MIR 79 189 -73 305 331 113 0 chr15 33517341 33517474 -52178280 + MIR SINE MIR 102 249 -13 1946 125 42 0 chr15 33518453 33518741 -52177013 + AluSp SINE Alu 1 300 -13 586 213 29 66 chr15 33518742 33518986 -52176768 + L1MC5 LINE L1 7701 7935 -26 21 82 0 0 chr15 33519721 33519770 -52175984 + AT_rich Low_complexity Low_complexity 1 49 0 2759 150 21 6 chr15 33519900 33520379 -52175375 - L1PA16 LINE L1 -30 6136 5651 4407 210 38 38 chr15 33520435 33521640 -52174114 + L1M4 LINE L1 16 1220 -5322 387 290 83 16 chr15 33521651 33521844 -52173910 + L1M4 LINE L1 1898 2103 -4543 2144 134 0 10 chr15 33521899 33522206 -52173548 + AluSx SINE Alu 1 304 -8 285 261 75 35 chr15 33522247 33522473 -52173281 + L1M4 LINE L1 2289 2523 -4123 * 1745 176 94 2 chr15 33522471 33522896 -52172858 + L1MB7 LINE L1 5718 6181 -3 21 0 0 0 chr15 33523295 33523316 -52172438 + AT_rich Low_complexity Low_complexity 1 21 0 2285 102 0 0 chr15 33524242 33524536 -52171218 + AluSp SINE Alu 18 311 -2 3153 62 0 62 chr15 33524761 33525231 -52170523 + L1PB1 LINE L1 5711 6151 0 1905 113 7 0 chr15 33525774 33526065 -52169689 - L1MA4A LINE L1 -7 6296 6004 417 275 129 34 chr15 33527464 33527665 -52168089 + MIR SINE MIR 38 256 -6 22 0 0 0 chr15 33528466 33528488 -52167266 + AT_rich Low_complexity Low_complexity 1 22 0 380 322 153 0 chr15 33529680 33529798 -52165956 + MIR SINE MIR 11 146 -116 298 165 58 126 chr15 33529805 33529908 -52165846 + HsTC2 DNA Tc2 4 99 -1799 376 295 25 8 chr15 33530000 33530122 -52165632 + MIR SINE MIR 139 262 0 22 0 0 0 chr15 33530220 33530242 -52165512 + AT_rich Low_complexity Low_complexity 1 22 0 1255 234 26 4 chr15 33530567 33530656 -52165098 + AluJo SINE Alu 20 106 -206 507 60 0 0 chr15 33530656 33530723 -52165031 + (TA)n Simple_repeat Simple_repeat 2 68 0 1255 234 26 4 chr15 33530723 33530898 -52164856 + AluJo SINE Alu 106 290 -22 22 0 0 0 chr15 33530898 33530920 -52164834 + AT_rich Low_complexity Low_complexity 1 22 0 230 53 184 0 chr15 33530920 33530958 -52164796 + L1PA11 LINE L1 6128 6172 -2 22 0 0 0 chr15 33531234 33531256 -52164498 + AT_rich Low_complexity Low_complexity 1 22 0 591 314 54 0 chr15 33531442 33531646 -52164108 + MIR SINE MIR 46 260 -2 413 309 81 0 chr15 33531857 33532006 -52163748 - MIR3 SINE MIR -17 191 31 1781 112 109 4 chr15 33532471 33532738 -52163016 + AluSx SINE Alu 1 295 -17 288 225 70 42 chr15 33532793 33532864 -52162890 - L2 LINE L2 -1 3312 3240 1971 116 0 52 chr15 33533117 33533450 -52162304 + AluSx SINE Alu 1 312 0 730 173 0 81 chr15 33533479 33533652 -52162102 - AluJo SINE Alu -90 222 64 1346 135 160 8 chr15 33534926 33535170 -52160584 + AluSx SINE Alu 1 281 -31 262 105 18 18 chr15 33535173 33535230 -52160524 + (TA)n Simple_repeat Simple_repeat 1 57 0 1063 113 25 0 chr15 33537036 33537195 -52158559 - AluY SINE Alu -12 299 137 1661 184 0 20 chr15 33538382 33538676 -52157078 - AluJb SINE Alu -22 290 3 2061 131 0 16 chr15 33539045 33539359 -52156395 - AluSx SINE Alu -1 311 3 694 111 0 9 chr15 33541311 33541419 -52154335 + L1PB3 LINE L1 6004 6110 -44 2038 129 11 3 chr15 33541419 33541706 -52154048 + AluSx SINE Alu 1 289 -23 2339 93 3 0 chr15 33541950 33542252 -52153502 + AluSg SINE Alu 1 303 -7 2260 106 3 0 chr15 33542263 33542564 -52153190 + AluSx SINE Alu 1 302 -10 38 39 0 0 chr15 33543565 33543617 -52152137 + AT_rich Low_complexity Low_complexity 1 52 0 187 300 55 55 chr15 33544752 33544862 -52150892 - L2 LINE L2 -3 3310 3201 242 292 154 31 chr15 33545012 33545142 -52150612 + MIR SINE MIR 65 210 -52 1520 224 3 0 chr15 33545233 33545528 -52150226 + AluJo SINE Alu 2 297 -15 309 239 123 23 chr15 33545833 33545963 -52149791 + MIR3 SINE MIR 66 208 0 1939 118 0 4 chr15 33546810 33547073 -52148681 + AluSq SINE Alu 1 262 -51 686 92 0 10 chr15 33547074 33547172 -52148582 + AluSg/x SINE Alu 188 284 -25 539 225 44 33 chr15 33547772 33547954 -52147800 + AluY SINE Alu 119 302 -9 1711 184 7 3 chr15 33548557 33548839 -52146915 + AluJo SINE Alu 1 283 -29 33 90 0 0 chr15 33549123 33549212 -52146542 + AT_rich Low_complexity Low_complexity 1 89 0 625 194 30 37 chr15 33549488 33549622 -52146132 + FLAM_A SINE Alu 1 133 0 1837 146 3 7 chr15 33549882 33550169 -52145585 - AluSx SINE Alu -26 286 1 500 222 131 50 chr15 33551220 33551418 -52144336 - Charlie8 DNA MER1_type -2143 274 61 724 203 69 43 chr15 33551452 33551684 -52144070 + MIR SINE MIR 14 251 -11 22 35 0 0 chr15 33551820 33551849 -52143905 + AT_rich Low_complexity Low_complexity 1 29 0 1342 148 108 68 chr15 33552304 33552628 -52143126 - MER44D DNA MER2_type -1 608 2 467 136 262 0 chr15 33552940 33553043 -52142711 + FLAM_A SINE Alu 1 130 -12 237 65 0 0 chr15 33553461 33553492 -52142262 + (T)n Simple_repeat Simple_repeat 1 31 0 187 547 0 0 chr15 33553513 33553566 -52142188 + G-rich Low_complexity Low_complexity 1 53 0 344 266 21 11 chr15 33554684 33554778 -52140976 - MIR SINE MIR -94 114 20 887 151 0 0 chr15 33554816 33554942 -52140812 + FLAM_C SINE Alu 1 126 -17 1318 160 53 63 chr15 33554968 33555286 -52140468 + MER33 DNA MER1_type 1 315 -9 1878 116 56 0 chr15 33555368 33555636 -52140118 - AluSg SINE Alu -17 293 11 511 311 149 0 chr15 33556015 33556250 -52139504 - L3 LINE CR1 -420 1157 888 2165 116 7 0 chr15 33556521 33556831 -52138923 + AluSx SINE Alu 1 312 0 2077 114 0 7 chr15 33557110 33557391 -52138363 + AluSc SINE Alu 1 279 -30 2208 98 3 31 chr15 33557391 33557708 -52138046 + AluSx SINE Alu 2 309 -3 205 121 0 69 chr15 33557716 33557774 -52137980 + (TTATA)n Simple_repeat Simple_repeat 4 57 0 692 224 109 11 chr15 33557805 33557988 -52137766 + MIR SINE MIR 34 234 -28 1949 69 120 4 chr15 33558060 33558335 -52137419 + AluY SINE Alu 1 307 -4 484 147 0 0 chr15 33558383 33558451 -52137303 + AluJ/FLAM SINE Alu 2 69 -243 518 208 195 32 chr15 33558453 33558607 -52137147 + AluJo/FRAM SINE Alu 130 308 -4 204 211 19 19 chr15 33558607 33558659 -52137095 + (TA)n Simple_repeat Simple_repeat 1 52 0 281 149 35 11 chr15 33558681 33558768 -52136986 + (TA)n Simple_repeat Simple_repeat 1 89 0 250 86 0 0 chr15 33559568 33559603 -52136151 + MADE1 DNA Mariner 1 35 -45 23 0 0 0 chr15 33559929 33559952 -52135802 + AT_rich Low_complexity Low_complexity 1 23 0 1997 102 57 21 chr15 33560161 33560444 -52135310 + AluSg SINE Alu 1 293 -17 356 653 0 0 chr15 33561471 33561615 -52134139 + G-rich Low_complexity Low_complexity 1 144 0 2306 103 0 0 chr15 33562048 33562349 -52133405 + AluSg SINE Alu 1 301 -9 2664 57 3 20 chr15 33563053 33563404 -52132350 - L1PA8 LINE L1 -1 6171 5827 2038 121 10 23 chr15 33563404 33563709 -52132045 - AluSc SINE Alu -8 301 1 9340 75 19 1 chr15 33563709 33565320 -52130434 - L1P3 LINE L1 -482 5690 4052 2070 130 0 0 chr15 33565478 33565642 -52130112 - AluSx SINE Alu -11 301 138 414 0 0 0 chr15 33565642 33565688 -52130066 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1923 102 0 0 chr15 33565688 33565934 -52129820 - AluY SINE Alu -30 281 36 2070 130 0 0 chr15 33565934 33566068 -52129686 - AluSx SINE Alu -172 140 2 1117 226 62 31 chr15 33566234 33566526 -52129228 - AluJo SINE Alu 0 302 2 23 0 0 0 chr15 33566555 33566578 -52129176 + AT_rich Low_complexity Low_complexity 1 23 0 401 290 100 35 chr15 33566621 33566821 -52128933 - MLT1I LTR MaLR -114 295 83 1397 199 8 0 chr15 33567032 33567283 -52128471 + L1MB7 LINE L1 5423 5675 -509 3965 50 50 0 chr15 33567284 33567784 -52127970 + LTR17 LTR ERV1 256 780 0 259 191 0 0 chr15 33567784 33567826 -52127928 + HERV17 LTR ERV1 2 43 -8583 * 57059 43 5 1 chr15 33567814 33574451 -52121303 + HERV17 LTR ERV1 1953 8621 -5 2723 58 0 0 chr15 33574453 33574779 -52120975 + LTR17 LTR ERV1 1 326 -454 1694 183 56 3 chr15 33574822 33575178 -52120576 + L1MB7 LINE L1 5665 6039 -145 8447 25 7 228 chr15 33575179 33576731 -52119023 - SVA Other Other -1 1385 177 1503 124 10 0 chr15 33576770 33576979 -52118775 - AluSg/x SINE Alu -14 296 86 2065 134 7 3 chr15 33577019 33577317 -52118437 + AluSx SINE Alu 3 301 -11 851 137 22 0 chr15 33577319 33577458 -52118296 + L1MB7 LINE L1 6035 6176 -8 457 95 68 0 chr15 33577473 33577547 -52118207 + L1MB7 LINE L1 6105 6183 -1 819 142 17 0 chr15 33577662 33577782 -52117972 + AluSg/x SINE Alu 91 212 -100 810 314 37 37 chr15 33577805 33578209 -52117545 - ERVL LTR ERVL -3652 2112 1709 2289 105 3 0 chr15 33578271 33578565 -52117189 - AluSp SINE Alu -18 295 1 1164 216 63 92 chr15 33578710 33578843 -52116911 - L1MC4 LINE L1 -136 7906 7771 2537 78 0 0 chr15 33578843 33579150 -52116604 + AluY SINE Alu 1 307 -4 1164 216 63 92 chr15 33579150 33579351 -52116403 - L1MC4 LINE L1 -271 7771 7566 2234 110 3 0 chr15 33579351 33579651 -52116103 - AluSx SINE Alu -11 301 1 8732 61 3 4 chr15 33579652 33580724 -52115030 + MER11C LTR ERVK 1 1071 0 1164 216 63 92 chr15 33580724 33580739 -52115015 - L1MC4 LINE L1 -476 7566 7552 2361 92 0 10 chr15 33580739 33581042 -52114712 - AluY SINE Alu -11 300 1 1164 216 63 92 chr15 33581042 33581164 -52114590 - L1MC4 LINE L1 -490 7552 7445 261 179 107 0 chr15 33581161 33581217 -52114537 - L1MC4 LINE L1 -972 7070 7009 * 345 132 19 0 chr15 33581217 33581270 -52114484 - MER45C DNA AcHobo 0 953 900 * 499 348 54 5 chr15 33581265 33581489 -52114265 - MER45C DNA AcHobo -325 628 394 24 32 0 0 chr15 33581969 33582000 -52113754 + AT_rich Low_complexity Low_complexity 1 31 0 345 186 29 0 chr15 33582336 33582406 -52113348 - L1MC4a LINE L1 -930 6878 6807 2067 111 29 26 chr15 33582431 33582738 -52113016 - AluSg SINE Alu -2 308 1 2199 112 3 0 chr15 33582769 33583063 -52112691 + AluSg SINE Alu 1 295 -15 4185 182 63 55 chr15 33583086 33584349 -52111405 - L1MB5 LINE L1 -6 6168 4917 1986 162 0 0 chr15 33584349 33584657 -52111097 - AluJb SINE Alu -4 308 1 4185 182 63 55 chr15 33584657 33585039 -52110715 - L1MB5 LINE L1 -1257 4917 4497 2227 96 20 3 chr15 33585039 33585341 -52110413 - AluSq SINE Alu -6 307 1 4185 182 63 55 chr15 33585341 33585628 -52110126 - L1MB5 LINE L1 -1677 4497 4214 746 186 0 101 chr15 33585628 33585816 -52109938 - L1MC4a LINE L1 -1077 6731 6563 500 333 122 28 chr15 33585981 33586557 -52109197 + L2 LINE L2 2012 2641 -673 810 285 0 0 chr15 33586591 33586805 -52108949 + MIR SINE MIR 48 261 -1 2448 77 0 3 chr15 33587436 33587748 -52108006 - AluY SINE Alu 0 311 1 24 32 0 0 chr15 33589042 33589073 -52106681 + GC_rich Low_complexity Low_complexity 1 31 0 233 197 16 0 chr15 33590325 33590386 -52105368 + CT-rich Low_complexity Low_complexity 3 64 0 2481 178 22 31 chr15 33590407 33590438 -52105316 - L1M4 LINE L1 -984 5162 5132 2054 156 0 0 chr15 33590438 33590740 -52105014 - AluSx SINE Alu -10 302 1 2481 178 22 31 chr15 33590740 33591216 -52104538 - L1M4 LINE L1 -1014 5132 4658 2237 114 3 0 chr15 33591216 33591513 -52104241 - AluSp SINE Alu -15 298 1 2481 178 22 31 chr15 33591513 33591550 -52104204 - L1M4 LINE L1 -1488 4658 4622 1533 230 224 23 chr15 33591611 33591759 -52103995 + L2 LINE L2 2357 2474 -839 2390 85 3 0 chr15 33591759 33592064 -52103690 + AluSx SINE Alu 1 306 -6 1533 230 224 23 chr15 33592064 33592739 -52103015 + L2 LINE L2 2474 3312 -1 668 112 0 0 chr15 33592781 33592870 -52102884 - 5S rRNA rRNA -31 90 2 302 136 0 0 chr15 33593200 33593244 -52102510 - AluSq/x SINE Alu -172 131 88 637 200 118 6 chr15 33593786 33593956 -52101798 + MER53 DNA DNA 1 189 0 412 325 25 0 chr15 33594065 33594222 -52101532 - MIR3 SINE MIR 0 208 48 21 36 0 0 chr15 33594771 33594799 -52100955 + AT_rich Low_complexity Low_complexity 1 28 0 1114 153 40 54 chr15 33595659 33595881 -52099873 + MER20 DNA MER1_type 1 219 0 201 210 180 80 chr15 33595992 33596039 -52099715 + MER5B DNA MER1_type 69 110 -68 192 77 0 0 chr15 33596039 33596065 -52099689 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 201 210 180 80 chr15 33596065 33596117 -52099637 + MER5B DNA MER1_type 110 178 0 359 303 170 12 chr15 33596560 33596725 -52099029 - MIR3 SINE MIR -3 205 15 235 304 82 64 chr15 33597077 33597248 -52098506 + L2 LINE L2 2698 2871 -443 280 74 0 56 chr15 33597248 33597302 -52098452 + (TTCCC)n Simple_repeat Simple_repeat 3 53 0 1567 153 0 4 chr15 33597320 33597548 -52098206 - AluSx SINE Alu -80 232 6 5129 52 2 0 chr15 33597865 33598455 -52097299 + L1PA6 LINE L1 5545 6135 -19 216 0 0 0 chr15 33598455 33598479 -52097275 + (TA)n Simple_repeat Simple_repeat 1 24 0 236 316 0 51 chr15 33598514 33598631 -52097123 - MER5B DNA MER1_type -67 111 1 278 265 184 0 chr15 33598655 33598753 -52097001 - MIR SINE MIR -76 132 17 953 148 59 0 chr15 33598905 33599074 -52096680 + MER5A DNA MER1_type 11 189 0 510 208 69 21 chr15 33599275 33599419 -52096335 - MIR SINE MIR -11 251 101 523 270 29 40 chr15 33599488 33599662 -52096092 - MER5A DNA MER1_type 0 189 18 226 193 18 70 chr15 33600122 33600179 -52095575 + MER5A DNA MER1_type 48 101 -88 2553 63 0 0 chr15 33600201 33600500 -52095254 + AluY SINE Alu 1 299 -12 303 28 0 0 chr15 33600873 33600909 -52094845 + (TA)n Simple_repeat Simple_repeat 1 36 0 463 214 56 0 chr15 33600919 33601045 -52094709 + L1MA10 LINE L1 3229 3361 -2785 2198 128 0 3 chr15 33601047 33601360 -52094394 + AluSx SINE Alu 1 312 0 3530 141 22 69 chr15 33601362 33601423 -52094331 + L1MA10 LINE L1 5141 5203 -1109 1918 159 7 0 chr15 33601423 33601725 -52094029 + AluSx SINE Alu 1 304 -8 3530 141 22 69 chr15 33601725 33602504 -52093250 + L1MA10 LINE L1 5203 5950 -362 906 192 6 0 chr15 33602505 33602661 -52093093 + FRAM SINE Alu 2 158 -18 1876 183 7 53 chr15 33602675 33603086 -52092668 + L1MA10 LINE L1 5936 6327 -7 467 325 76 12 chr15 33603163 33603412 -52092342 + HAL1 LINE L1 2194 2458 -49 655 132 0 0 chr15 33603441 33603532 -52092222 + AluS SINE Alu 2 92 -220 267 250 60 36 chr15 33603903 33603987 -52091767 - MER81 DNA DNA -6 108 23 320 279 81 0 chr15 33603987 33604098 -52091656 + MIR SINE MIR 99 218 -44 36 0 0 0 chr15 33604599 33604635 -52091119 + AT_rich Low_complexity Low_complexity 1 36 0 2192 117 7 0 chr15 33604834 33605141 -52090613 + AluSp SINE Alu 1 309 -4 346 342 188 15 chr15 33605789 33605915 -52089839 - L2 LINE L2 -545 2769 2666 1928 197 31 6 chr15 33605915 33606271 -52089483 + MLT1A1 LTR MaLR 1 365 0 346 342 188 15 chr15 33606271 33606474 -52089280 - L2 LINE L2 -648 2666 2383 674 228 176 5 chr15 33606496 33606689 -52089065 - MIR SINE MIR -36 226 1 185 309 115 30 chr15 33606717 33606882 -52088872 - L2 LINE L2 -984 2330 2152 402 226 29 10 chr15 33608241 33608343 -52087411 + MIR3 SINE MIR 96 199 -9 2093 144 9 103 chr15 33608670 33609099 -52086655 + MLT1B LTR MaLR 2 390 0 239 191 60 36 chr15 33609167 33609251 -52086503 - L1MC4 LINE L1 -198 7844 7759 2030 111 21 0 chr15 33609338 33609617 -52086137 + AluSx SINE Alu 1 285 -27 216 0 0 0 chr15 33609622 33609646 -52086108 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 426 327 164 21 chr15 33610628 33611096 -52084658 + L2 LINE L2 2253 2787 -527 1001 189 44 0 chr15 33611179 33611359 -52084395 + MER5A DNA MER1_type 2 189 0 285 287 98 98 chr15 33611984 33612061 -52083693 - MER5A DNA MER1_type -6 183 107 1940 55 0 4 chr15 33612061 33612298 -52083456 + AluY SINE Alu 72 307 -4 285 287 98 98 chr15 33612298 33612394 -52083360 - MER5A DNA MER1_type -81 108 10 1126 240 63 39 chr15 33612497 33612860 -52082894 + HAL1 LINE L1 1 372 -2135 4133 238 17 27 chr15 33612865 33612998 -52082756 + L1MEc LINE L1 2162 2295 -3920 2389 96 0 6 chr15 33612998 33613312 -52082442 + AluSx SINE Alu 1 312 0 4133 238 17 27 chr15 33613312 33614369 -52081385 + L1MEc LINE L1 2295 3306 -2909 1648 115 0 0 chr15 33614369 33614586 -52081168 + AluSq SINE Alu 1 217 -96 2018 132 10 13 chr15 33614693 33615004 -52080750 - AluSg SINE Alu 0 310 1 6137 118 30 24 chr15 33615008 33615978 -52079776 - L1MC1 LINE L1 -13 6320 5345 741 282 177 36 chr15 33616001 33616530 -52079224 + L1M4 LINE L1 4487 5139 -1007 1434 171 56 28 chr15 33616530 33616816 -52078938 + AluJo SINE Alu 1 294 -18 741 282 177 36 chr15 33616816 33616981 -52078773 + L1M4 LINE L1 5139 5279 -867 1561 178 35 0 chr15 33617004 33617263 -52078491 + AluSx SINE Alu 1 268 -44 459 250 10 10 chr15 33617428 33617524 -52078230 - AluJ/FLAM SINE Alu -215 97 2 451 254 62 23 chr15 33617552 33617729 -52078025 - L1M4 LINE L1 -2098 4048 3865 1948 137 3 31 chr15 33618703 33619024 -52076730 - AluSx SINE Alu 0 312 1 26 30 0 0 chr15 33619259 33619292 -52076462 + AT_rich Low_complexity Low_complexity 1 33 0 436 284 37 0 chr15 33619652 33619786 -52075968 - LTR33 LTR ERVL -373 148 10 271 364 39 13 chr15 33619989 33620143 -52075611 - L2 LINE L2 -531 2783 2626 2132 116 10 0 chr15 33620791 33621083 -52074671 + AluSq SINE Alu 1 295 -18 716 186 16 0 chr15 33621083 33621202 -52074552 - AluJo/FLAM SINE Alu -190 122 2 303 272 0 25 chr15 33621221 33621302 -52074452 + Charlie8 DNA MER1_type 114 192 -2225 2312 90 10 0 chr15 33621332 33621632 -52074122 - AluSg SINE Alu -7 303 1 2310 113 0 7 chr15 33621723 33622032 -52073722 - AluSq SINE Alu -6 307 1 212 270 14 14 chr15 33622595 33622669 -52073085 - MIR SINE MIR -111 151 78 1009 97 0 8 chr15 33622673 33622807 -52072947 + AluSq/x SINE Alu 1 133 -180 1983 121 7 4 chr15 33622810 33623118 -52072636 + AluSx SINE Alu 1 309 0 186 363 71 18 chr15 33623685 33623853 -52071901 - MIR SINE MIR -52 210 34 2179 142 6 55 chr15 33623967 33624086 -52071668 + MER7A DNA MER2_type 1 124 -2914 2116 120 3 0 chr15 33624086 33624378 -52071376 - AluSx SINE Alu -19 293 1 2179 142 6 55 chr15 33624378 33624624 -52071130 + MER7A DNA MER2_type 124 346 0 1549 261 94 24 chr15 33624746 33625256 -52070498 - L2 LINE L2 0 3313 2782 274 298 219 0 chr15 33625296 33625410 -52070344 - L2 LINE L2 0 3272 3134 1912 113 153 43 chr15 33625417 33625483 -52070271 - MER47A DNA MER2_type -1957 366 309 1457 169 83 24 chr15 33625483 33625773 -52069981 + AluJo SINE Alu 1 307 -5 1912 113 153 43 chr15 33625773 33626033 -52069721 - MER47A DNA MER2_type -2014 309 4 2075 136 0 7 chr15 33626065 33626359 -52069395 + AluSx SINE Alu 1 292 -20 2167 231 105 65 chr15 33626360 33626683 -52069071 + L1ME3A LINE L1 5254 5563 -607 1890 144 68 37 chr15 33626683 33627009 -52068745 + MER1B DNA MER1_type 1 336 -1 2167 231 105 65 chr15 33627009 33627545 -52068209 + L1ME3A LINE L1 5563 6147 -23 1624 213 70 99 chr15 33627545 33627723 -52068031 + MLT1F LTR MaLR 1 183 -359 1865 170 3 7 chr15 33627723 33628023 -52067731 + AluJo SINE Alu 1 299 -13 1624 213 70 99 chr15 33628023 33628390 -52067364 + MLT1F LTR MaLR 183 530 -12 24 32 0 0 chr15 33628403 33628434 -52067320 + AT_rich Low_complexity Low_complexity 1 31 0 2206 68 29 42 chr15 33629074 33629384 -52066370 + L1PB2 LINE L1 5844 6149 -2 2642 49 0 0 chr15 33629534 33629839 -52065915 + AluY SINE Alu 1 305 -6 1704 184 7 3 chr15 33630442 33630724 -52065030 + AluJo SINE Alu 1 283 -29 33 90 0 0 chr15 33631008 33631097 -52064657 + AT_rich Low_complexity Low_complexity 1 89 0 673 194 30 37 chr15 33631373 33631507 -52064247 + FLAM_A SINE Alu 1 133 0 2258 80 0 7 chr15 33631767 33632055 -52063699 - AluSx SINE Alu -26 286 1 1497 247 87 16 chr15 33633468 33633940 -52061814 - MLT1H LTR MaLR -4 545 5 226 296 70 0 chr15 33634016 33634087 -52061667 + MIR SINE MIR 76 151 -111 2151 110 20 0 chr15 33634253 33634552 -52061202 - AluSx SINE Alu -7 305 1 567 238 110 26 chr15 33634566 33634793 -52060961 - HAL1 LINE L1 -5 2502 2257 2109 112 0 3 chr15 33634852 33635137 -52060617 + AluSx SINE Alu 10 293 -19 24 0 0 0 chr15 33635726 33635750 -52060004 + AT_rich Low_complexity Low_complexity 1 24 0 2048 92 28 7 chr15 33636518 33636801 -52058953 + AluSx SINE Alu 1 289 -23 2166 102 7 0 chr15 33637346 33637641 -52058113 - AluSc SINE Alu -12 297 1 2274 127 107 35 chr15 33637754 33638157 -52057597 + MSTB1 LTR MaLR 1 432 0 599 72 24 24 chr15 33638306 33638389 -52057365 - AluSx SINE Alu -16 294 212 1140 87 7 7 chr15 33638390 33638539 -52057215 - AluSx SINE Alu -163 149 1 1378 173 48 0 chr15 33638542 33638790 -52056964 - AluJo SINE Alu -7 305 46 182 138 0 0 chr15 33639682 33639711 -52056043 - L2 LINE L2 -18 3295 3267 2481 69 3 0 chr15 33640459 33640763 -52054991 - AluY SINE Alu -6 305 1 2508 66 0 3 chr15 33640946 33641250 -52054504 + AluY SINE Alu 1 303 -8 2378 83 3 3 chr15 33641305 33641605 -52054149 - AluSp SINE Alu -13 300 1 283 206 0 44 chr15 33641618 33641686 -52054068 + MIR3 SINE MIR 105 169 -39 1439 146 123 19 chr15 33641861 33642129 -52053625 + AluSg SINE Alu 1 296 -14 2142 125 0 7 chr15 33642964 33643261 -52052493 - AluSx SINE Alu -17 295 1 2189 78 24 17 chr15 33643386 33643679 -52052075 + AluSq SINE Alu 1 295 -18 207 279 153 42 chr15 33646465 33646655 -52049099 + L2 LINE L2 2276 2486 -828 2299 160 66 75 chr15 33646809 33646926 -52048828 + Tigger7 DNA MER2_type 1 118 -2369 2028 140 3 7 chr15 33646926 33647226 -52048528 + AluSx SINE Alu 1 299 -13 2299 160 66 75 chr15 33647226 33647639 -52048115 + Tigger7 DNA MER2_type 118 526 -1961 589 163 0 0 chr15 33647633 33647725 -52048029 + Tigger7 DNA MER2_type 2396 2487 0 * 979 162 39 0 chr15 33650529 33650683 -52045071 - AluSg/x SINE Alu -17 293 134 2470 82 0 0 chr15 33650782 33651087 -52044667 + AluSc SINE Alu 1 305 -4 1759 168 10 13 chr15 33652116 33652420 -52043334 + AluJo SINE Alu 1 303 -9 2275 109 0 3 chr15 33652422 33652735 -52043019 + AluSx SINE Alu 1 312 0 562 156 0 0 chr15 33652912 33653002 -52042752 + 5S rRNA rRNA 1 90 -31 1773 165 7 0 chr15 33653156 33653429 -52042325 - AluSx SINE Alu -2 310 36 207 0 0 0 chr15 33653921 33653944 -52041810 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2007 139 13 7 chr15 33653953 33654262 -52041492 + AluSx SINE Alu 1 311 -1 339 314 145 0 chr15 33654262 33654421 -52041333 + MIR SINE MIR 61 242 -20 24 96 0 0 chr15 33654671 33654744 -52041010 + AT_rich Low_complexity Low_complexity 1 73 0 1729 149 66 0 chr15 33654771 33655060 -52040694 - AluSx SINE Alu -4 308 1 1002 100 8 0 chr15 33655157 33655287 -52040467 + AluSq/x SINE Alu 1 131 -182 2311 82 3 3 chr15 33655836 33656129 -52039625 + AluSp SINE Alu 1 293 -20 301 105 0 0 chr15 33657388 33657426 -52038328 + Tigger2 DNA MER2_type 1 38 -2680 * 659 245 43 0 chr15 33657425 33657564 -52038190 - MER8 DNA MER2_type -93 146 2 180 342 112 6 chr15 33657604 33657765 -52037989 + L2 LINE L2 2864 3041 -231 2155 122 0 0 chr15 33658176 33658472 -52037282 + AluSx SINE Alu 1 296 -16 2416 72 7 0 chr15 33658601 33658894 -52036860 + AluSp SINE Alu 2 296 -17 21 0 0 0 chr15 33659459 33659480 -52036274 + AT_rich Low_complexity Low_complexity 1 21 0 606 143 0 0 chr15 33659855 33659939 -52035815 + AluSx SINE Alu 2 85 -227 2388 75 3 7 chr15 33659940 33660246 -52035508 + AluSg SINE Alu 1 305 -5 1535 121 0 9 chr15 33660246 33660467 -52035287 + AluSx SINE Alu 71 291 -19 304 262 173 24 chr15 33660935 33661103 -52034651 - MIR SINE MIR -64 198 6 2240 102 7 0 chr15 33661722 33662015 -52033739 + AluSx SINE Alu 1 295 -17 1455 142 24 109 chr15 33663978 33664308 -52031446 - AluYb8 SINE Alu -16 302 1 282 56 0 0 chr15 33664575 33664611 -52031143 - Alu SINE Alu -265 37 2 24 0 0 0 chr15 33664783 33664807 -52030947 + AT_rich Low_complexity Low_complexity 1 24 0 1839 156 17 23 chr15 33665032 33665333 -52030421 - AluJb SINE Alu -13 299 1 295 279 0 0 chr15 33665806 33665874 -52029880 + L2 LINE L2 3240 3307 -6 1268 266 11 43 chr15 33666904 33667272 -52028482 + MLT1A1 LTR MaLR 10 365 0 2123 121 24 0 chr15 33667954 33668244 -52027510 - AluSx SINE Alu -15 297 1 324 120 0 0 chr15 33668491 33668541 -52027213 + (TG)n Simple_repeat Simple_repeat 2 51 0 1711 173 3 20 chr15 33668587 33668882 -52026872 + AluJo SINE Alu 1 290 -22 738 180 16 0 chr15 33668899 33669021 -52026733 + FLAM_C SINE Alu 3 126 -17 2319 105 0 3 chr15 33669164 33669468 -52026286 + AluSq SINE Alu 1 303 -10 25 65 0 0 chr15 33669472 33669518 -52026236 + AT_rich Low_complexity Low_complexity 1 46 0 276 250 120 0 chr15 33669523 33669631 -52026123 + L1ME4a LINE L1 5982 6102 -19 2259 64 0 0 chr15 33669631 33669942 -52025812 - AluY SINE Alu 0 311 1 909 123 0 0 chr15 33670080 33670202 -52025552 + AluSg SINE Alu 1 122 -188 2376 68 3 0 chr15 33670203 33670497 -52025257 + AluY SINE Alu 1 295 -16 1871 104 39 46 chr15 33670500 33670807 -52024947 + AluSg SINE Alu 1 305 -5 237 258 67 34 chr15 33670819 33670908 -52024846 + Charlie4 DNA MER1_type 1869 1960 -1 16196 119 25 20 chr15 33671215 33671873 -52023881 - Tigger1 DNA MER2_type 0 2418 1765 2562 63 0 0 chr15 33671873 33672173 -52023581 - AluY SINE Alu -11 300 1 16196 119 25 20 chr15 33672173 33673742 -52022012 - Tigger1 DNA MER2_type -653 1765 176 1904 136 16 19 chr15 33673742 33674050 -52021704 + AluSq SINE Alu 1 307 -6 16196 119 25 20 chr15 33674050 33674227 -52021527 - Tigger1 DNA MER2_type -2242 176 1 2209 125 0 3 chr15 33674527 33674831 -52020923 - AluSx SINE Alu -9 303 1 196 259 56 19 chr15 33675404 33675458 -52020296 - L2 LINE L2 -16 3256 3201 515 92 0 0 chr15 33675473 33675538 -52020216 + Alu SINE Alu 2 66 -244 2361 65 3 13 chr15 33675978 33676286 -52019468 + AluY SINE Alu 1 305 -6 2252 68 16 16 chr15 33676904 33677211 -52018543 - AluSp SINE Alu -6 307 1 2258 79 3 44 chr15 33677236 33677551 -52018203 + AluSp SINE Alu 1 302 -11 439 232 66 114 chr15 33677848 33677988 -52017766 + MIR SINE MIR 52 197 -65 923 184 82 6 chr15 33677988 33678146 -52017608 + FAM SINE Alu 4 173 -2 2130 133 3 3 chr15 33678155 33678463 -52017291 + AluSg SINE Alu 1 308 -2 439 232 66 114 chr15 33678463 33678523 -52017231 + MIR SINE MIR 205 252 -10 2271 71 3 0 chr15 33679305 33679587 -52016167 - AluSg SINE Alu -26 284 2 504 82 0 118 chr15 33679988 33680073 -52015681 - AluSq/x SINE Alu -180 133 59 653 208 142 96 chr15 33680181 33680486 -52015268 + LTR37B LTR ERV1 12 344 -124 1528 171 27 27 chr15 33680486 33680785 -52014969 - AluJb SINE Alu -13 299 1 653 208 142 96 chr15 33680785 33680916 -52014838 + LTR37B LTR ERV1 344 468 0 941 196 0 22 chr15 33681078 33681257 -52014497 + FAM SINE Alu 1 175 0 617 170 14 109 chr15 33681267 33681414 -52014340 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr15 33681516 33681540 -52014214 + AT_rich Low_complexity Low_complexity 1 24 0 2146 104 0 26 chr15 33681580 33681887 -52013867 - AluSc SINE Alu -10 299 1 1820 157 14 7 chr15 33681891 33682172 -52013582 - AluJb SINE Alu -15 297 15 2129 109 7 3 chr15 33682192 33682486 -52013268 + AluSq SINE Alu 1 295 -18 1688 155 21 28 chr15 33682525 33682816 -52012938 + AluJo SINE Alu 1 289 -23 1445 193 33 17 chr15 33682993 33683075 -52012679 - AluJo SINE Alu -6 306 227 2885 77 41 0 chr15 33683075 33683437 -52012317 + MER51B LTR ERV1 1 377 0 1445 193 33 17 chr15 33683437 33683655 -52012099 - AluJo SINE Alu -85 227 1 3543 99 22 38 chr15 33684017 33684522 -52011232 + LOR1a LTR ERV1 1 497 0 2287 109 0 0 chr15 33685243 33685545 -52010209 + AluSg SINE Alu 1 302 -8 381 113 0 0 chr15 33685992 33686045 -52009709 - MER4E LTR ERV1 0 766 714 1492 263 120 63 chr15 33686053 33686292 -52009462 - L2 LINE L2 -221 3092 2868 2327 54 9 41 chr15 33686292 33686608 -52009146 + AluY SINE Alu 1 306 -5 1492 263 120 63 chr15 33686608 33687064 -52008690 - L2 LINE L2 -445 2868 2350 2159 119 10 10 chr15 33687064 33687374 -52008380 + AluSx SINE Alu 1 310 -2 1492 263 120 63 chr15 33687374 33687485 -52008269 - L2 LINE L2 -963 2350 2247 2377 83 0 0 chr15 33687958 33688248 -52007506 - AluSc SINE Alu -18 291 2 567 256 158 55 chr15 33688337 33688591 -52007163 - L2 LINE L2 0 3313 3034 1365 118 0 94 chr15 33688711 33688956 -52006798 + AluSx SINE Alu 59 280 -32 877 152 0 7 chr15 33689181 33689319 -52006435 + AluSq/x SINE Alu 1 137 -176 1561 112 130 32 chr15 33689321 33689598 -52006156 + AluSq SINE Alu 5 308 -5 2064 119 3 7 chr15 33689598 33689893 -52005861 + AluSg SINE Alu 1 294 -16 518 282 125 33 chr15 33689963 33690250 -52005504 - L1MC/D LINE L1 -615 5547 5269 388 260 97 25 chr15 33690373 33690691 -52005063 - L1MC/D LINE L1 -1038 5108 4751 2267 101 3 3 chr15 33690755 33691051 -52004703 + AluSx SINE Alu 2 297 -15 1909 145 0 17 chr15 33691602 33691899 -52003855 - AluJb SINE Alu -20 292 1 731 158 16 31 chr15 33694021 33694148 -52001606 + FLAM_C SINE Alu 1 125 -8 1201 123 6 0 chr15 33694160 33694331 -52001423 + AluY SINE Alu 1 172 -139 1258 125 44 138 chr15 33694333 33694449 -52001305 + AluSx SINE Alu 21 146 -166 2094 113 3 7 chr15 33694449 33694742 -52001012 + AluSp SINE Alu 1 292 -21 1258 125 44 138 chr15 33694742 33694922 -52000832 + AluSx SINE Alu 146 289 -23 746 223 61 0 chr15 33694935 33695083 -52000671 + FRAM SINE Alu 2 158 -8 2120 116 7 0 chr15 33695250 33695535 -52000219 - AluSx SINE Alu -25 287 1 2026 84 74 7 chr15 33695812 33696097 -51999657 - AluSx SINE Alu 0 312 9 22 65 0 0 chr15 33696450 33696481 -51999273 + GC_rich Low_complexity Low_complexity 1 31 0 1961 119 0 8 chr15 33696708 33696976 -51998778 - AluSx SINE Alu -46 266 1 2189 78 24 17 chr15 33697101 33697394 -51998360 + AluSq SINE Alu 1 295 -18 2044 69 7 52 chr15 33699035 33699340 -51996414 + AluSq SINE Alu 7 297 -16 2106 78 7 7 chr15 33701220 33701515 -51994239 + AluSq SINE Alu 1 295 -18 2094 98 3 44 chr15 33702451 33702768 -51992986 + AluSp SINE Alu 1 304 -9 209 259 19 19 chr15 33703086 33703140 -51992614 + MIR SINE MIR 20 73 -135 1882 154 0 0 chr15 33703284 33703577 -51992177 + AluSx SINE Alu 6 298 -14 2152 114 0 16 chr15 33703601 33703737 -51992017 + AluSx SINE Alu 1 138 -174 2213 96 3 0 chr15 33703737 33704038 -51991716 + AluSp SINE Alu 1 302 -11 2152 114 0 16 chr15 33704038 33704216 -51991538 + AluSx SINE Alu 138 310 -2 297 291 42 4 chr15 33704520 33704619 -51991135 - MIR3 SINE MIR -28 180 79 783 225 30 6 chr15 33704721 33704890 -51990864 + FAM SINE Alu 1 173 -2 1308 148 66 62 chr15 33704955 33705084 -51990670 + AluJo SINE Alu 11 138 -174 2361 68 0 0 chr15 33705084 33705380 -51990374 + AluY SINE Alu 1 296 -15 1308 148 66 62 chr15 33705380 33705507 -51990247 + AluJo SINE Alu 138 268 -44 2372 66 3 7 chr15 33705574 33705877 -51989877 + AluSp SINE Alu 1 302 -11 2288 68 0 0 chr15 33706002 33706295 -51989459 - AluY SINE Alu -18 293 1 1750 97 4 19 chr15 33706298 33706566 -51989188 - AluSq SINE Alu -6 307 44 2147 107 3 0 chr15 33706695 33706995 -51988759 + AluSx SINE Alu 1 301 -11 1683 178 78 84 chr15 33707224 33707284 -51988470 - LTR2B LTR ERV1 0 490 431 2159 80 42 0 chr15 33707284 33707573 -51988181 + AluSq SINE Alu 1 301 -12 1683 178 78 84 chr15 33707573 33707974 -51987780 - LTR2B LTR ERV1 -59 431 32 1999 92 0 18 chr15 33708215 33708497 -51987257 - AluSc SINE Alu -30 279 3 938 335 92 20 chr15 33708622 33708775 -51986979 + L2 LINE L2 2402 2543 -770 2011 112 0 7 chr15 33708775 33709092 -51986662 + AluSx SINE Alu 1 315 0 938 335 92 20 chr15 33709092 33709553 -51986201 + L2 LINE L2 2543 3142 -171 2103 78 32 6 chr15 33709833 33710205 -51985549 - LTR7 LTR ERV1 -18 432 1 1960 109 27 10 chr15 33711021 33711314 -51984440 - AluY SINE Alu -13 298 1 1374 180 42 21 chr15 33711326 33711499 -51984255 - AluJo SINE Alu -17 295 112 198 0 0 0 chr15 33711499 33711521 -51984233 + (TG)n Simple_repeat Simple_repeat 2 23 0 1374 180 42 21 chr15 33711521 33711636 -51984118 - AluJo SINE Alu -200 112 1 2025 108 0 19 chr15 33711817 33712124 -51983630 + AluSq SINE Alu 4 304 -9 2147 103 7 3 chr15 33713006 33713306 -51982448 + AluSx SINE Alu 1 301 -11 1673 166 0 10 chr15 33713319 33713615 -51982139 + AluSx SINE Alu 3 295 -17 208 274 70 76 chr15 33713658 33713704 -51982050 - L2 LINE L2 -5 3308 3263 2106 96 3 10 chr15 33713704 33713996 -51981758 + AluSp SINE Alu 1 290 -23 414 0 0 0 chr15 33713999 33714045 -51981709 + (TAA)n Simple_repeat Simple_repeat 3 48 0 208 274 70 76 chr15 33714045 33714151 -51981603 - L2 LINE L2 -52 3261 3153 205 304 140 41 chr15 33714246 33714417 -51981337 - L2 LINE L2 -157 3156 2969 * 267 314 172 30 chr15 33714403 33714572 -51981182 - L2 LINE L2 -995 2319 2127 594 268 145 68 chr15 33714680 33714866 -51980888 - L2 LINE L2 -1246 2068 1898 2009 113 7 0 chr15 33714866 33715177 -51980577 + AluSq SINE Alu 1 313 0 594 268 145 68 chr15 33715177 33715355 -51980399 - L2 LINE L2 -1416 1898 1675 1547 156 14 34 chr15 33715356 33715651 -51980103 - AluJb SINE Alu -15 297 9 282 154 0 0 chr15 33715651 33715690 -51980064 - Alu SINE Alu -258 45 7 817 139 0 8 chr15 33715828 33715957 -51979797 + AluSq/x SINE Alu 7 134 -179 1879 143 0 3 chr15 33715958 33716251 -51979503 + AluSx SINE Alu 1 292 -20 1307 228 3 49 chr15 33716251 33716576 -51979178 + MSTD LTR MaLR 87 396 0 1729 150 5 95 chr15 33716676 33716744 -51979010 + MER31A LTR ERV1 11 84 -401 1904 112 4 0 chr15 33716744 33717013 -51978741 - AluSg SINE Alu -40 270 1 2141 95 3 10 chr15 33717022 33717317 -51978437 - AluSp SINE Alu -20 293 1 1729 150 5 95 chr15 33717317 33717638 -51978116 + MER31A LTR ERV1 92 374 -111 336 130 0 19 chr15 33717960 33718014 -51977740 + LTR54B LTR ERV1 1 53 -445 4771 104 7 13 chr15 33718014 33718686 -51977068 - LTR8 LTR ERV1 0 691 24 1271 113 54 0 chr15 33718686 33718872 -51976882 - AluSq SINE Alu -117 196 1 656 186 47 71 chr15 33718874 33719086 -51976668 + LTR54B LTR ERV1 119 335 -163 4022 109 62 73 chr15 33719086 33719209 -51976545 - LTR8 LTR ERV1 0 691 568 2217 78 7 7 chr15 33719209 33719518 -51976236 - AluSg1 SINE Alu 0 309 1 4022 109 62 73 chr15 33719518 33719790 -51975964 - LTR8 LTR ERV1 -123 568 294 2246 74 3 0 chr15 33719790 33720086 -51975668 - AluSp SINE Alu -16 297 1 4022 109 62 73 chr15 33720086 33720113 -51975641 - LTR8 LTR ERV1 -397 294 268 1906 138 0 3 chr15 33720113 33720404 -51975350 - AluSq SINE Alu -22 291 2 4022 109 62 73 chr15 33720404 33720636 -51975118 - LTR8 LTR ERV1 -423 268 41 2310 84 0 3 chr15 33720636 33720946 -51974808 - AluY SINE Alu -2 309 1 4022 109 62 73 chr15 33720946 33720987 -51974767 - LTR8 LTR ERV1 -650 41 1 656 186 47 71 chr15 33720987 33721032 -51974722 + LTR54B LTR ERV1 335 410 -88 566 161 0 97 chr15 33721880 33722066 -51973688 - AluY SINE Alu -142 169 2 285 119 0 0 chr15 33722066 33722108 -51973646 - LTR8 LTR ERV1 -649 42 1 * 397 252 41 8 chr15 33722108 33722211 -51973543 + LTR54B LTR ERV1 369 475 -23 2104 112 0 0 chr15 33722212 33722507 -51973247 + AluSx SINE Alu 1 295 -17 2055 104 13 7 chr15 33722510 33722809 -51972945 + AluSq SINE Alu 1 301 -12 2227 80 3 13 chr15 33722809 33723108 -51972646 + AluY SINE Alu 1 296 -15 21 36 0 0 chr15 33723580 33723608 -51972146 + AT_rich Low_complexity Low_complexity 1 28 0 2237 89 0 0 chr15 33724194 33724485 -51971269 - AluY SINE Alu -20 291 1 228 35 0 0 chr15 33724633 33724662 -51971092 + (CA)n Simple_repeat Simple_repeat 1 29 0 220 149 27 14 chr15 33725025 33725099 -51970655 + (CCCA)n Simple_repeat Simple_repeat 1 75 0 294 220 12 40 chr15 33725145 33725318 -51970436 + A-rich Low_complexity Low_complexity 5 172 0 1280 149 0 5 chr15 33725330 33725538 -51970216 - AluY SINE Alu -104 207 1 324 102 0 0 chr15 33725685 33725734 -51970020 + (CA)n Simple_repeat Simple_repeat 2 50 0 2238 97 0 13 chr15 33725793 33726103 -51969651 - AluY SINE Alu -5 306 1 828 155 0 0 chr15 33726112 33726241 -51969513 - FLAM_C SINE Alu -3 130 2 2152 86 17 0 chr15 33726284 33726576 -51969178 - AluSp SINE Alu -16 297 1 2114 112 0 13 chr15 33726989 33727303 -51968451 + AluSx SINE Alu 1 310 -2 1844 144 3 0 chr15 33727347 33727631 -51968123 + AluSx SINE Alu 5 289 -23 2210 73 0 51 chr15 33727654 33727970 -51967784 + AluY SINE Alu 1 300 -11 268 157 43 0 chr15 33728024 33728094 -51967660 + (TA)n Simple_repeat Simple_repeat 2 74 0 523 49 99 0 chr15 33728112 33728254 -51967500 + (TA)n Simple_repeat Simple_repeat 2 157 0 341 204 82 31 chr15 33728257 33728355 -51967399 + L1MCa LINE L1 1963 2065 -4361 31 26 0 0 chr15 33728355 33728393 -51967361 + AT_rich Low_complexity Low_complexity 1 38 0 894 28 18 0 chr15 33728877 33728986 -51966768 + BC200 scRNA scRNA 2 112 -88 434 344 58 69 chr15 33729548 33730013 -51965741 + MLT1K LTR MaLR 106 565 -23 2318 85 3 0 chr15 33730107 33730412 -51965342 - AluSp SINE Alu -7 306 1 1638 146 17 7 chr15 33730412 33730700 -51965054 - L1M3 LINE L1 -575 5608 5318 1767 151 13 7 chr15 33730704 33731009 -51964745 - AluSx SINE Alu -5 307 1 857 149 8 0 chr15 33731009 33731143 -51964611 - AluSq/x SINE Alu -177 135 1 2062 106 14 0 chr15 33731148 33731441 -51964313 - AluSx SINE Alu -15 297 1 234 224 86 0 chr15 33731532 33731590 -51964164 + L2 LINE L2 3210 3272 0 2077 185 83 25 chr15 33731807 33732277 -51963477 + MLT1D LTR MaLR 1 497 -8 1912 104 72 0 chr15 33732413 33732691 -51963063 + AluSq SINE Alu 1 298 -15 678 221 0 0 chr15 33732836 33732967 -51962787 + AluSp SINE Alu 14 144 -169 279 0 0 0 chr15 33733301 33733332 -51962422 + (CA)n Simple_repeat Simple_repeat 1 31 0 703 139 9 9 chr15 33733334 33733449 -51962305 - FRAM SINE Alu -11 165 51 3969 58 0 10 chr15 33733462 33733965 -51961789 + L1P LINE L1 3672 4169 -1977 208 0 0 133 chr15 33733969 33734052 -51961702 + (TCTCCC)n Simple_repeat Simple_repeat 4 75 0 2000 190 83 30 chr15 33734808 33735277 -51960477 + MLT1D LTR MaLR 4 497 -8 1889 108 72 0 chr15 33735413 33735692 -51960062 + AluSq SINE Alu 1 299 -14 1885 149 0 10 chr15 33735837 33736132 -51959622 + AluSx SINE Alu 14 305 -7 24 67 0 0 chr15 33736259 33736304 -51959450 + AT_rich Low_complexity Low_complexity 1 45 0 1672 155 0 33 chr15 33736430 33736734 -51959020 - AluJo SINE Alu -18 294 1 1366 171 91 69 chr15 33737007 33737369 -51958385 + MLT1A2 LTR MaLR 1 370 -4 2002 102 28 3 chr15 33737390 33737675 -51958079 - AluSg SINE Alu -18 292 1 2062 76 44 4 chr15 33737716 33737991 -51957763 - AluY SINE Alu -25 286 1 2053 122 0 3 chr15 33738011 33738305 -51957449 - AluSg SINE Alu -17 293 1 2139 100 7 0 chr15 33738403 33738694 -51957060 - AluSg SINE Alu -17 293 1 3355 26 0 0 chr15 33738738 33739123 -51956631 - L1PA5 LINE L1 0 6154 5770 1898 126 0 0 chr15 33739437 33739739 -51956015 - AluSx SINE Alu 0 306 5 10016 41 5 1 chr15 33740743 33742360 -51953394 - L1PA5 LINE L1 -371 5783 4164 5764 106 37 31 chr15 33742361 33744708 -51951046 - SVA Other Other -518 1386 1 249 151 57 0 chr15 33744709 33744762 -51950992 + G-rich Low_complexity Low_complexity 1 56 0 3969 58 0 10 chr15 33744763 33745266 -51950488 - L1P LINE L1 -1977 4169 3672 691 142 9 9 chr15 33745279 33745392 -51950362 + FRAM SINE Alu 51 163 -13 360 0 0 0 chr15 33745394 33745434 -51950320 + (TG)n Simple_repeat Simple_repeat 2 41 0 2111 97 0 3 chr15 33745462 33745750 -51950004 + AluY SINE Alu 1 287 -24 28 102 0 0 chr15 33745750 33745848 -51949906 + AT_rich Low_complexity Low_complexity 1 98 0 2195 102 7 0 chr15 33745859 33746163 -51949591 - AluSq SINE Alu -7 306 1 1098 177 8 20 chr15 33746254 33746503 -51949251 + AluSq SINE Alu 1 246 -67 590 77 0 0 chr15 33746894 33746972 -51948782 - AluS SINE Alu -235 78 1 1999 123 0 10 chr15 33747063 33747373 -51948381 + AluSq SINE Alu 1 307 -6 2009 141 0 0 chr15 33747379 33747683 -51948071 - AluSx SINE Alu -8 304 1 2026 123 7 0 chr15 33748500 33748801 -51946953 + AluSx SINE Alu 1 303 -9 291 302 77 12 chr15 33749061 33749230 -51946524 + HAL1b LINE L1 495 674 -674 1711 166 10 30 chr15 33749304 33749606 -51946148 - AluJo SINE Alu -16 296 1 275 176 0 108 chr15 33749629 33749652 -51946102 + AluYb8 SINE Alu 122 136 -172 2161 112 23 3 chr15 33749652 33749956 -51945798 + AluSq SINE Alu 3 312 -1 1648 81 5 9 chr15 33750599 33750809 -51944945 - AluSg SINE Alu -99 211 3 581 254 29 74 chr15 33751011 33751232 -51944522 + L1MEd LINE L1 700 899 -5220 2503 72 0 0 chr15 33751232 33751536 -51944218 - AluY SINE Alu -7 304 1 581 254 29 74 chr15 33751536 33751692 -51944062 + L1MEd LINE L1 899 1060 -5059 864 168 7 0 chr15 33751705 33751842 -51943912 + AluSq/x SINE Alu 1 138 -175 812 262 35 39 chr15 33752338 33752620 -51943134 + AluSg SINE Alu 15 295 -15 2099 139 0 0 chr15 33752675 33752970 -51942784 - AluSx SINE Alu -5 307 13 345 200 71 0 chr15 33753189 33753259 -51942495 + AluJ/FRAM SINE Alu 222 296 -6 24 0 0 0 chr15 33753265 33753289 -51942465 + AT_rich Low_complexity Low_complexity 1 24 0 258 301 90 37 chr15 33753337 33753692 -51942062 + L1M4 LINE L1 3386 3759 -2387 234 0 0 0 chr15 33753692 33753718 -51942036 + (TA)n Simple_repeat Simple_repeat 2 27 0 2188 126 0 0 chr15 33753732 33754034 -51941720 - AluSx SINE Alu -8 304 3 368 303 197 14 chr15 33754087 33754305 -51941449 + MIR SINE MIR 5 262 0 2303 86 3 10 chr15 33754383 33754685 -51941069 - AluSp SINE Alu -12 301 2 17838 136 53 26 chr15 33754781 33757096 -51938658 + L1PB1 LINE L1 1 2254 -4608 2350 90 0 13 chr15 33757096 33757397 -51938357 + AluSg SINE Alu 1 297 -13 17838 136 53 26 chr15 33757397 33757996 -51937758 + L1PB1 LINE L1 2254 2836 -4026 2398 103 0 0 chr15 33757996 33758306 -51937448 - AluSg SINE Alu 0 310 1 17838 136 53 26 chr15 33758306 33758459 -51937295 + L1PB1 LINE L1 2836 2983 -3879 2196 78 4 7 chr15 33758459 33758784 -51936970 - AluSg SINE Alu 0 324 1 17838 136 53 26 chr15 33758784 33759072 -51936682 + L1PB1 LINE L1 2983 3262 -3600 2266 111 0 0 chr15 33759072 33759369 -51936385 - AluSx SINE Alu -15 297 1 2208 75 0 87 chr15 33759379 33759700 -51936054 - AluY SINE Alu -18 293 1 17838 136 53 26 chr15 33759700 33760354 -51935400 + L1PB1 LINE L1 3270 4123 -2739 4601 206 17 37 chr15 33760491 33761293 -51934461 + L1 LINE L1 3464 4236 -2626 1917 127 17 7 chr15 33761293 33761584 -51934170 - AluSx SINE Alu -18 294 1 4601 206 17 37 chr15 33761584 33761984 -51933770 + L1 LINE L1 4236 4642 -2220 781 236 5 19 chr15 33762530 33762746 -51933008 + AluY SINE Alu 75 287 -24 28 102 0 0 chr15 33762746 33762844 -51932910 + AT_rich Low_complexity Low_complexity 1 98 0 1980 139 13 0 chr15 33762855 33763156 -51932598 - AluSx SINE Alu -7 305 1 6082 201 17 45 chr15 33763158 33763556 -51932198 + L1PB1 LINE L1 4254 4661 -2206 1944 137 0 11 chr15 33763556 33763840 -51931914 + AluSx SINE Alu 1 281 -31 360 0 0 0 chr15 33763840 33763880 -51931874 + (CA)n Simple_repeat Simple_repeat 1 40 0 6082 201 17 45 chr15 33763880 33765392 -51930362 + L1PB1 LINE L1 4660 6212 -655 2246 96 44 0 chr15 33765392 33765685 -51930069 + AluSp SINE Alu 2 307 -6 6082 201 17 45 chr15 33765685 33766095 -51929659 + L1PB1 LINE L1 6212 6632 -235 351 44 0 0 chr15 33766095 33766140 -51929614 + (CA)n Simple_repeat Simple_repeat 2 46 0 6082 201 17 45 chr15 33766140 33766270 -51929484 + L1PB1 LINE L1 6632 6629 -238 2310 113 3 0 chr15 33766270 33766571 -51929183 - AluSp SINE Alu -11 302 1 6082 201 17 45 chr15 33766571 33766803 -51928951 + L1PB1 LINE L1 6628 6865 -2 1767 163 10 14 chr15 33766846 33767140 -51928614 + AluJb SINE Alu 1 293 -19 232 258 5 70 chr15 33767677 33767863 -51927891 + T-rich Low_complexity Low_complexity 4 177 0 519 245 63 31 chr15 33768028 33768187 -51927567 + MIR3 SINE MIR 8 171 -37 251 35 0 0 chr15 33768250 33768279 -51927475 + (CA)n Simple_repeat Simple_repeat 2 30 0 828 147 43 37 chr15 33768688 33768851 -51926903 + MER3 DNA MER1_type 6 122 -87 2179 100 10 3 chr15 33769758 33770067 -51925687 + AluSq SINE Alu 1 311 -2 2409 235 119 41 chr15 33770090 33770181 -51925573 - MER21B LTR ERV1 -11 852 770 2586 53 0 28 chr15 33770181 33770500 -51925254 - AluY SINE Alu -1 310 1 2409 235 119 41 chr15 33770500 33770765 -51924989 - MER21B LTR ERV1 -93 770 527 2471 74 0 0 chr15 33770765 33771062 -51924692 - AluSx SINE Alu -15 297 1 2409 235 119 41 chr15 33771062 33771255 -51924499 - MER21B LTR ERV1 -336 527 350 1913 133 10 23 chr15 33771255 33771555 -51924199 - AluJb SINE Alu -15 297 2 1849 147 0 29 chr15 33771558 33771870 -51923884 - AluJo SINE Alu -8 304 2 2409 235 119 41 chr15 33771870 33772098 -51923656 - MER21B LTR ERV1 -514 349 8 383 270 0 22 chr15 33772114 33772203 -51923551 - MER21B LTR ERV1 -776 87 1 2556 57 0 0 chr15 33772225 33772523 -51923231 - AluY SINE Alu -13 298 1 2226 108 0 0 chr15 33772564 33772850 -51922904 - AluSx SINE Alu -26 286 1 2068 131 10 0 chr15 33773048 33773346 -51922408 + AluSx SINE Alu 3 303 -9 2083 137 0 9 chr15 33773594 33773909 -51921845 + AluSx SINE Alu 1 312 0 318 219 14 0 chr15 33773923 33773996 -51921758 + L1MCa LINE L1 1995 2068 -4358 * 349 289 0 0 chr15 33773963 33774053 -51921701 + L1MC4 LINE L1 6894 6983 -1339 210 191 0 0 chr15 33774053 33774095 -51921659 + (TA)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr15 33774110 33774131 -51921623 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr15 33774338 33774366 -51921388 + AT_rich Low_complexity Low_complexity 1 28 0 2340 96 0 3 chr15 33774419 33774731 -51921023 + AluSx SINE Alu 1 311 -1 314 254 87 89 chr15 33774822 33774964 -51920790 + L1M4 LINE L1 4151 4292 -1854 2232 119 0 0 chr15 33774964 33775258 -51920496 + AluSg SINE Alu 1 294 -16 314 254 87 89 chr15 33775258 33775407 -51920347 + L1M4 LINE L1 4292 4440 -1706 2171 114 3 3 chr15 33775407 33775714 -51920040 + AluSx SINE Alu 1 307 -5 314 254 87 89 chr15 33775714 33775936 -51919818 + L1M4 LINE L1 4440 4664 -1482 411 302 53 18 chr15 33775949 33776174 -51919580 + L1M4b LINE L1 21 253 -6606 1468 172 4 4 chr15 33776193 33776425 -51919329 - MER46A DNA MER2_type -2 234 3 747 270 63 39 chr15 33776696 33776893 -51918861 + L1M4b LINE L1 2273 2481 -4657 1460 219 51 17 chr15 33776893 33777185 -51918569 + AluJo SINE Alu 1 302 0 747 270 63 39 chr15 33777185 33777272 -51918482 + L1M4b LINE L1 2481 2564 -4574 1847 140 57 86 chr15 33777290 33777599 -51918155 + L1MB3 LINE L1 5774 6069 -114 2405 88 0 3 chr15 33777599 33777905 -51917849 + AluSx SINE Alu 1 305 -7 1847 140 57 86 chr15 33777905 33778016 -51917738 + L1MB3 LINE L1 6069 6182 -1 314 242 95 56 chr15 33778083 33778314 -51917440 + L1M4b LINE L1 2586 2825 -4313 189 74 0 0 chr15 33778332 33778359 -51917395 + (TATG)n Simple_repeat Simple_repeat 1 27 0 248 176 0 0 chr15 33778362 33778413 -51917341 + LTR66 LTR ERVL 394 444 -166 238 303 15 0 chr15 33778426 33778492 -51917262 + L1MCa LINE L1 3 69 -6357 933 170 16 62 chr15 33778493 33778687 -51917067 + AluSq SINE Alu 1 185 -128 6604 57 124 59 chr15 33779959 33781054 -51914700 + MER11A LTR ERVK 1 1266 0 1525 279 37 37 chr15 33781054 33781548 -51914206 + MER51C-int LTR ERV1 5842 6334 -1482 2127 122 67 28 chr15 33781548 33781909 -51913845 + THE1C LTR MaLR 1 375 0 1525 279 37 37 chr15 33781909 33782439 -51913315 + MER51C-int LTR ERV1 6334 7816 0 1241 210 168 76 chr15 33782452 33782923 -51912831 + MER51C LTR ERV1 127 640 0 2969 178 28 72 chr15 33782927 33783104 -51912650 + L1MB7 LINE L1 5494 5677 -507 2014 126 0 7 chr15 33783104 33783413 -51912341 + AluSx SINE Alu 1 307 0 2969 178 28 72 chr15 33783413 33783796 -51911958 + L1MB7 LINE L1 5677 6021 -163 2107 125 0 0 chr15 33783796 33784104 -51911650 - AluSg SINE Alu 0 308 1 2969 178 28 72 chr15 33784104 33784250 -51911504 + L1MB7 LINE L1 6021 6172 -12 1897 135 57 3 chr15 33784253 33784535 -51911219 - AluSx SINE Alu -15 297 1 297 0 0 0 chr15 33784543 33784576 -51911178 + (T)n Simple_repeat Simple_repeat 1 33 0 1891 154 14 43 chr15 33784723 33784911 -51910843 + L1MB8 LINE L1 5416 5608 -575 2494 69 0 7 chr15 33784911 33785214 -51910540 + AluY SINE Alu 1 301 -10 1891 154 14 43 chr15 33785214 33785312 -51910442 + L1MB8 LINE L1 5608 5691 -492 3519 85 2 9 chr15 33785312 33785759 -51909995 - MLT2A1 LTR ERVL 0 444 1 1891 154 14 43 chr15 33785759 33785840 -51909914 + L1MB8 LINE L1 5691 5773 -410 2393 83 0 3 chr15 33786422 33786724 -51909030 + AluY SINE Alu 1 301 -10 201 39 0 0 chr15 33786880 33786906 -51908848 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 2208 125 0 3 chr15 33786906 33787201 -51908553 - AluSq SINE Alu -15 298 3 1196 148 45 20 chr15 33787298 33787500 -51908254 + AluJb SINE Alu 90 296 -16 256 264 107 25 chr15 33787531 33787690 -51908064 + L2 LINE L2 1569 1740 -1574 265 231 0 0 chr15 33787801 33787853 -51907901 + LTR30 LTR ERV1 1 52 -670 1675 95 182 224 chr15 33787858 33788496 -51907258 + LTR12 LTR ERV1 57 590 -124 373 243 85 31 chr15 33788552 33788693 -51907061 + MLT1H LTR MaLR 61 175 -234 183 80 0 0 chr15 33788818 33788843 -51906911 + (T)n Simple_repeat Simple_repeat 1 25 0 272 156 234 13 chr15 33788902 33788979 -51906775 + MLT1H LTR MaLR 296 389 -1 600 265 124 77 chr15 33789395 33789516 -51906238 + Tigger8 DNA MER2_type 15 129 -537 2249 112 0 3 chr15 33789516 33789821 -51905933 + AluY SINE Alu 1 304 -7 600 265 124 77 chr15 33789821 33790061 -51905693 + Tigger8 DNA MER2_type 129 393 -273 2165 129 0 3 chr15 33790101 33790403 -51905351 + AluSx SINE Alu 1 301 -11 2287 91 0 3 chr15 33790584 33790881 -51904873 - AluSg SINE Alu -14 296 1 1293 194 8 4 chr15 33790896 33791148 -51904606 + L1MB8 LINE L1 5920 6172 -6 2350 74 0 3 chr15 33791380 33791676 -51904078 + AluY SINE Alu 1 295 -16 210 261 45 23 chr15 33792167 33792255 -51903499 + GA-rich Low_complexity Low_complexity 4 93 0 332 132 69 7 chr15 33792340 33792484 -51903270 + (TATAA)n Simple_repeat Simple_repeat 5 157 0 41 203 0 0 chr15 33792520 33792589 -51903165 + AT_rich Low_complexity Low_complexity 1 69 0 269 214 0 0 chr15 33792589 33792645 -51903109 + T-rich Low_complexity Low_complexity 1 56 0 171 0 0 0 chr15 33792645 33792816 -51902938 + AT_rich Low_complexity Low_complexity 1 171 0 413 252 19 0 chr15 33792940 33793043 -51902711 + AluSg/x SINE Alu 192 296 -14 1176 181 186 45 chr15 33793181 33793350 -51902404 - Charlie4a DNA MER1_type -1453 508 364 2183 101 0 0 chr15 33793350 33793638 -51902116 - AluSc SINE Alu -19 290 3 1176 181 186 45 chr15 33793638 33793777 -51901977 - Charlie4a DNA MER1_type -1597 364 246 1728 156 150 9 chr15 33793777 33794097 -51901657 + MLT1A1 LTR MaLR 1 365 0 1176 181 186 45 chr15 33794097 33794191 -51901563 - Charlie4a DNA MER1_type -1715 246 48 1721 170 3 14 chr15 33794513 33794801 -51900953 - AluJo SINE Alu -18 294 10 2486 72 3 0 chr15 33794824 33795131 -51900623 - AluSp SINE Alu -4 309 2 2268 107 0 0 chr15 33795211 33795509 -51900245 - AluSx SINE Alu -8 304 7 1125 189 126 0 chr15 33795551 33795832 -51899922 + MER58 DNA MER1_type 1 2408 -12 239 255 66 85 chr15 33795905 33796011 -51899743 + MER5A DNA MER1_type 71 174 -15 1588 173 13 29 chr15 33796261 33796568 -51899186 + AluJo SINE Alu 3 304 -8 1792 153 0 27 chr15 33796748 33797049 -51898705 + AluSx SINE Alu 1 293 -19 223 204 20 0 chr15 33797059 33797108 -51898646 + MER5B DNA MER1_type 5 54 -124 1286 139 5 28 chr15 33797453 33797669 -51898085 + AluSx SINE Alu 8 218 -94 550 245 126 7 chr15 33797757 33797908 -51897846 - MER5B DNA MER1_type -4 174 6 512 275 140 14 chr15 33797898 33798105 -51897649 + MIR SINE MIR 16 248 -14 * 652 247 68 106 chr15 33798257 33798817 -51896937 + MER34 LTR ERV1 1 527 -15 1940 112 27 27 chr15 33798817 33799111 -51896643 + AluSx SINE Alu 1 294 -18 652 247 68 106 chr15 33799111 33799127 -51896627 + MER34 LTR ERV1 527 542 0 180 0 0 0 chr15 33800097 33800117 -51895637 + (A)n Simple_repeat Simple_repeat 1 20 0 817 61 0 0 chr15 33800127 33800226 -51895528 + AluS SINE Alu 1 99 -214 1688 128 12 0 chr15 33800365 33800622 -51895132 + MER101 LTR ERV1 215 474 0 275 301 172 18 chr15 33800825 33800988 -51894766 - MIR3 SINE MIR -6 202 15 2076 119 4 0 chr15 33801770 33802048 -51893706 + AluSp SINE Alu 1 279 -34 377 269 0 0 chr15 33802218 33802322 -51893432 - AluSc SINE Alu -96 203 100 262 233 12 76 chr15 33802327 33802499 -51893255 + A-rich Low_complexity Low_complexity 2 162 0 228 259 0 0 chr15 33802575 33802633 -51893121 + A-rich Low_complexity Low_complexity 1 58 0 209 266 19 45 chr15 33802678 33802832 -51892922 + A-rich Low_complexity Low_complexity 5 154 0 9528 89 4 1 chr15 33802976 33804379 -51891375 + L1PA6 LINE L1 3514 4920 -1226 6771 64 8 3 chr15 33804482 33805543 -51890211 + L1PA6 LINE L1 5087 6151 -3 696 252 43 39 chr15 33805543 33805801 -51889953 - MER90 LTR ERV1 -316 259 1 259 61 0 0 chr15 33805951 33805984 -51889770 - MER5A DNA MER1_type -123 66 34 180 159 227 0 chr15 33805953 33805997 -51889757 + MER5A DNA MER1_type 136 189 0 * 717 186 86 95 chr15 33806005 33806226 -51889528 - MER20 DNA MER1_type 0 219 1 286 233 253 0 chr15 33806251 33806397 -51889357 + L1ME LINE L1 5674 5856 -306 2190 113 10 7 chr15 33806459 33806768 -51888986 - AluSq SINE Alu -3 310 1 2128 155 14 0 chr15 33806839 33807200 -51888554 - MER47A DNA MER2_type 0 366 1 939 200 5 37 chr15 33807429 33807619 -51888135 + MER5A DNA MER1_type 5 188 -1 2426 72 0 0 chr15 33807872 33808176 -51887578 - AluY SINE Alu -7 304 1 2477 85 47 14 chr15 33808443 33808806 -51886948 - THE1C LTR MaLR 0 375 1 320 232 14 0 chr15 33809265 33809334 -51886420 - L1MC4 LINE L1 -1211 6831 6762 2205 118 0 7 chr15 33809558 33809855 -51885899 - AluSx SINE Alu -17 295 1 1791 194 61 29 chr15 33810232 33810675 -51885079 - LTR2B LTR ERV1 0 490 34 12592 90 5 9 chr15 33810696 33811223 -51884531 - Harlequin LTR ERV1 0 6896 6368 2516 80 0 0 chr15 33811223 33811534 -51884220 - AluY SINE Alu 0 311 1 12592 90 5 9 chr15 33811534 33812947 -51882807 - Harlequin LTR ERV1 -528 6368 4945 * 16624 163 4 11 chr15 33812943 33815814 -51879940 - HERVE LTR ERV1 -1806 6007 3156 565 247 0 14 chr15 33815875 33816021 -51879733 - MER115 DNA AcHobo -80 613 470 236 318 152 0 chr15 33816037 33816188 -51879566 - MER115 DNA AcHobo -389 304 131 752 176 50 60 chr15 33816407 33816589 -51879165 - FRAM SINE Alu -1 175 1 451 233 101 16 chr15 33816595 33816724 -51879030 + MIR SINE MIR 74 213 -49 714 201 0 22 chr15 33816792 33816931 -51878823 - FLAM_C SINE Alu -7 136 1 2371 157 47 0 chr15 33817060 33817467 -51878287 - MSTB LTR MaLR 0 426 1 1688 181 3 23 chr15 33817900 33818199 -51877555 + AluJo SINE Alu 1 293 -19 2520 63 0 3 chr15 33818957 33819260 -51876494 + AluY SINE Alu 1 302 -9 13104 218 27 44 chr15 33819320 33820811 -51874943 - L1PA15 LINE L1 -223 7380 5865 2160 120 48 31 chr15 33820811 33821169 -51874585 + THE1B LTR MaLR 1 364 0 13104 218 27 44 chr15 33821169 33822579 -51873175 - L1PA15 LINE L1 -1738 5865 4433 1084 92 0 0 chr15 33822579 33822721 -51873033 - AluY SINE Alu -6 305 164 13104 218 27 44 chr15 33822721 33822733 -51873021 - L1PA15 LINE L1 -3170 4433 4422 2025 91 0 11 chr15 33822733 33822998 -51872756 - AluSc SINE Alu -47 262 1 13104 218 27 44 chr15 33822998 33825806 -51869948 - L1PA15 LINE L1 -3181 4422 1607 390 268 0 58 chr15 33825868 33826058 -51869696 - L1PA15 LINE L1 -5782 1799 1621 1691 181 16 10 chr15 33826092 33826401 -51869353 + AluJo SINE Alu 1 311 -1 4721 132 3 3 chr15 33826553 33827302 -51868452 + L1PA15 LINE L1 5416 6164 -1 1771 147 9 61 chr15 33827407 33827733 -51868021 - AluSx SINE Alu -3 309 1 691 200 55 18 chr15 33827973 33828138 -51867616 - MER20 DNA MER1_type -20 199 29 695 35 0 0 chr15 33828421 33828506 -51867248 + THE1A LTR MaLR 271 355 0 1032 253 119 23 chr15 33828506 33828894 -51866860 - L1MC4 LINE L1 -404 7638 7214 2471 228 93 28 chr15 33829246 33829414 -51866340 - L1ME1 LINE L1 -5 6956 6800 1983 217 56 24 chr15 33829414 33829953 -51865801 - LTR38 LTR ERV1 0 556 1 2471 228 93 28 chr15 33829953 33830559 -51865195 - L1ME1 LINE L1 -161 6800 6132 1112 239 65 21 chr15 33830570 33831001 -51864753 - L1ME1 LINE L1 -873 6068 5619 398 237 61 15 chr15 33831035 33831166 -51864588 - L1ME1 LINE L1 -4547 2575 2439 1663 88 25 0 chr15 33831221 33831460 -51864294 - L1PB1 LINE L1 -3 6148 5904 354 174 29 0 chr15 33831460 33831529 -51864225 - L1ME1 LINE L1 -4670 2452 2382 460 231 0 0 chr15 33831531 33831639 -51864115 - L1ME1 LINE L1 -5232 1191 1084 1519 257 76 35 chr15 33831958 33832534 -51863220 - L1ME1 LINE L1 -5793 630 31 1764 97 9 0 chr15 33832634 33832861 -51862893 - AluSc SINE Alu -6 303 75 235 245 0 0 chr15 33832959 33833008 -51862746 + MLT1A2 LTR MaLR 326 374 0 27 0 0 0 chr15 33833008 33833035 -51862719 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr15 33833198 33833219 -51862535 + AT_rich Low_complexity Low_complexity 1 21 0 4065 195 53 11 chr15 33833242 33834331 -51861423 + L1PA13 LINE L1 1 1316 -5471 2501 87 0 0 chr15 33834376 33834687 -51861067 - AluSx SINE Alu -1 311 1 400 282 69 8 chr15 33834801 33834932 -51860822 + L2 LINE L2 3175 3313 0 2438 112 0 0 chr15 33835524 33835836 -51859918 + AluSx SINE Alu 1 312 0 284 226 214 20 chr15 33835838 33835859 -51859895 - L1M4 LINE L1 -2896 3250 3234 1680 164 34 20 chr15 33835859 33836152 -51859602 - AluJo SINE Alu -15 297 1 284 226 214 20 chr15 33836152 33836378 -51859376 - L1M4 LINE L1 -2912 3234 2955 940 145 0 93 chr15 33836856 33837049 -51858705 - AluSg/x SINE Alu -1 311 137 1095 126 0 78 chr15 33837629 33837820 -51857934 - AluSg/x SINE Alu 0 312 137 2123 95 7 0 chr15 33841958 33842231 -51853523 + AluSx SINE Alu 1 275 -37 259 23 45 23 chr15 33842236 33842280 -51853474 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 198 0 0 0 chr15 33842385 33842407 -51853347 + (TG)n Simple_repeat Simple_repeat 2 23 0 253 81 0 0 chr15 33843468 33843505 -51852249 - MER116 DNA Mariner -5 75 39 248 285 67 48 chr15 33843665 33843830 -51851924 - HSMAR1 DNA Mariner -208 1079 912 2114 131 0 0 chr15 33847335 33847626 -51848128 - AluSx SINE Alu -21 291 1 2302 98 0 13 chr15 33847732 33848037 -51847717 + AluSc SINE Alu 1 301 -8 24 32 0 0 chr15 33848605 33848636 -51847118 + AT_rich Low_complexity Low_complexity 1 31 0 535 280 151 14 chr15 33848681 33848960 -51846794 - L1MC4a LINE L1 -1916 5892 5576 711 218 126 20 chr15 33849108 33849457 -51846297 - L1MC5 LINE L1 -60 7901 7516 505 245 158 18 chr15 33849520 33849974 -51845780 + LTR50 LTR ERVL 1 682 -113 21 57 0 0 chr15 33849993 33850028 -51845726 + AT_rich Low_complexity Low_complexity 1 35 0 381 166 107 107 chr15 33850070 33850151 -51845603 - L1MC5 LINE L1 -542 7419 7339 2114 124 56 9 chr15 33850151 33850473 -51845281 - MER1B DNA MER1_type 0 337 1 381 166 107 107 chr15 33850473 33850560 -51845194 - L1MC5 LINE L1 -621 7340 7251 350 139 0 56 chr15 33850592 33850664 -51845090 - MLT1E3 LTR MaLR 0 624 557 1331 176 9 52 chr15 33850664 33850798 -51844956 + L1M4 LINE L1 3603 3741 -2405 1611 179 3 36 chr15 33850798 33851100 -51844654 + AluJo SINE Alu 1 292 -20 1331 176 9 52 chr15 33851100 33851312 -51844442 + L1M4 LINE L1 3741 3934 -2212 25191 129 21 80 chr15 33851332 33851356 -51844398 + L1PA4 LINE L1 1 25 -6445 2177 110 3 19 chr15 33851356 33851666 -51844088 + AluSq SINE Alu 1 305 -8 25191 129 21 80 chr15 33851666 33852682 -51843072 + L1PA4 LINE L1 25 1099 -5371 1998 102 6 51 chr15 33852682 33852995 -51842759 - AluSq SINE Alu -14 299 1 25191 129 21 80 chr15 33852995 33853471 -51842283 + L1PA4 LINE L1 1099 1601 -4869 2318 103 0 16 chr15 33853471 33853782 -51841972 + AluY SINE Alu 5 310 -1 25191 129 21 80 chr15 33853782 33854808 -51840946 + L1PA4 LINE L1 1601 2686 -3784 1461 13 0 0 chr15 33854808 33854964 -51840790 + L1PA4 LINE L1 6309 6464 -6 25191 129 21 80 chr15 33854964 33858947 -51836807 + L1PA4 LINE L1 2686 6464 -6 11026 113 23 15 chr15 33858939 33859964 -51835790 + L1PA10 LINE L1 3607 4622 -1546 * 2018 113 33 4 chr15 33859964 33860262 -51835492 + AluSg SINE Alu 1 306 0 11026 113 23 15 chr15 33860262 33860595 -51835159 + L1PA10 LINE L1 4622 4951 -1217 2018 150 49 25 chr15 33860595 33860961 -51834793 - THE1C LTR MaLR 0 375 1 11026 113 23 15 chr15 33860961 33861673 -51834081 + L1PA10 LINE L1 4951 5698 -470 2250 117 3 0 chr15 33861673 33861972 -51833782 + AluSx SINE Alu 1 300 -12 11026 113 23 15 chr15 33861972 33862298 -51833456 + L1PA10 LINE L1 5698 6020 -148 4041 146 38 98 chr15 33862297 33862594 -51833160 + L1MB7 LINE L1 5064 5377 -807 * 1061 72 0 66 chr15 33862594 33862647 -51833107 - L1PB1 LINE L1 -3 6148 6093 2066 112 52 0 chr15 33862647 33862933 -51832821 - AluSg SINE Alu -9 301 1 1061 72 0 66 chr15 33862933 33863031 -51832723 - L1PB1 LINE L1 -58 6093 6007 4041 146 38 98 chr15 33863031 33863767 -51831987 + L1MB7 LINE L1 5377 6073 -111 345 229 0 0 chr15 33863945 33864028 -51831726 + L1MB3 LINE L1 6099 6181 -2 1084 236 183 22 chr15 33864034 33864395 -51831359 - MLT1E2 LTR MaLR -50 576 158 43 81 0 0 chr15 33864797 33864896 -51830858 + GC_rich Low_complexity Low_complexity 1 99 0 337 280 162 50 chr15 33865096 33865435 -51830319 + L1M2 LINE L1 861 1237 -5612 463 219 57 0 chr15 33865855 33865960 -51829794 + MIR3 SINE MIR 81 191 -17 235 0 0 54 chr15 33865993 33866030 -51829724 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 514 205 55 31 chr15 33866402 33866529 -51829225 + L2 LINE L2 3184 3313 0 2650 41 0 19 chr15 33866626 33866943 -51828811 + AluY SINE Alu 1 311 0 1698 138 3 35 chr15 33867025 33867314 -51828440 + AluJo SINE Alu 1 280 -32 417 209 112 75 chr15 33867570 33867704 -51828050 + MER5B DNA MER1_type 21 159 -19 399 325 45 104 chr15 33867762 33867967 -51827787 - L2 LINE L2 -67 3205 2989 2301 95 7 7 chr15 33867967 33868271 -51827483 + AluSg1 SINE Alu 1 304 -5 1105 153 25 20 chr15 33868279 33868482 -51827272 + L1MB4 LINE L1 5970 6173 -7 399 325 45 104 chr15 33868482 33868787 -51826967 - L2 LINE L2 -290 2982 2718 434 153 0 0 chr15 33868926 33868985 -51826769 - AluS SINE Alu -250 60 2 2078 112 30 3 chr15 33869177 33869481 -51826273 + AluSx SINE Alu 1 312 0 672 269 31 40 chr15 33869590 33869817 -51825937 + MIR SINE MIR 1 225 -37 217 200 31 31 chr15 33869820 33869870 -51825884 + (TAA)n Simple_repeat Simple_repeat 3 56 -11 1781 144 0 25 chr15 33869870 33870183 -51825571 + AluSx SINE Alu 5 310 0 217 200 31 31 chr15 33870183 33870196 -51825558 + (TAA)n Simple_repeat Simple_repeat 55 67 0 291 344 90 0 chr15 33870416 33870538 -51825216 + MIR SINE MIR 20 152 -56 187 315 34 45 chr15 33870662 33870751 -51825003 - L2 LINE L2 -177 3095 3008 1688 159 33 20 chr15 33870973 33871274 -51824480 - AluJo SINE Alu -7 305 1 254 217 163 36 chr15 33871334 33871500 -51824254 - L1M4 LINE L1 -3005 3141 2955 2028 125 14 3 chr15 33872052 33872348 -51823406 - AluSg SINE Alu -11 299 1 7738 188 134 26 chr15 33872348 33873012 -51822742 - L1PA16 LINE L1 -4 6865 6274 1750 174 0 7 chr15 33873012 33873300 -51822454 - AluJb SINE Alu -26 286 1 7738 188 134 26 chr15 33873300 33873465 -51822289 - L1PA16 LINE L1 -595 6274 6128 1543 147 4 0 chr15 33873465 33873703 -51822051 - AluJo SINE Alu -1 311 73 7738 188 134 26 chr15 33873703 33874588 -51821166 - L1PA16 LINE L1 -741 6128 5340 390 21 0 0 chr15 33874588 33874635 -51821119 + (TG)n Simple_repeat Simple_repeat 2 48 0 7738 188 134 26 chr15 33874635 33876050 -51819704 - L1PA16 LINE L1 -1529 5340 3364 3556 147 13 0 chr15 33876085 33876609 -51819145 - L1PA16 LINE L1 -6318 531 1 264 159 23 0 chr15 33876676 33876720 -51819034 - MER5B DNA MER1_type -1 177 133 381 194 82 0 chr15 33876867 33876965 -51818789 - L1MC3 LINE L1 -1 7784 7679 27 73 0 0 chr15 33876974 33877029 -51818725 + AT_rich Low_complexity Low_complexity 1 55 0 2904 162 53 9 chr15 33877139 33877663 -51818091 - L1MB2 LINE L1 -3 6168 5622 1967 136 65 26 chr15 33877675 33878014 -51817740 + THE1B LTR MaLR 1 352 -12 231 175 0 0 chr15 33878051 33878091 -51817663 - L1MB2 LINE L1 -569 5611 5572 3490 165 57 32 chr15 33878270 33879155 -51816599 + L1M2 LINE L1 4573 5434 -878 863 173 0 8 chr15 33879155 33879288 -51816466 + AluJo/FLAM SINE Alu 2 133 -169 2324 100 0 3 chr15 33879288 33879588 -51816166 + AluSg SINE Alu 1 299 -11 3490 165 57 32 chr15 33879588 33879878 -51815876 + L1M2 LINE L1 5433 5772 -540 1398 142 36 24 chr15 33879908 33880161 -51815593 - Tigger2 DNA MER2_type -11 2707 2452 4294 136 24 1 chr15 33880210 33880874 -51814880 - Tigger2 DNA MER2_type -1961 757 79 261 83 0 0 chr15 33880906 33880942 -51814812 + (TG)n Simple_repeat Simple_repeat 1 36 0 596 228 123 0 chr15 33881217 33881379 -51814375 - MIR SINE MIR -2 260 79 827 272 0 11 chr15 33881427 33881618 -51814136 - MER5A DNA MER1_type 0 189 1 291 152 51 38 chr15 33881705 33881784 -51813970 - HAL1b LINE L1 0 1348 1269 1343 238 257 13 chr15 33881814 33882355 -51813399 + LTR50 LTR ERVL 120 792 -3 2917 3 0 0 chr15 33882440 33882749 -51813005 + AluYa5 SINE Alu 1 309 -2 2227 67 46 11 chr15 33882755 33883038 -51812716 + AluSx SINE Alu 1 293 -19 4112 100 101 16 chr15 33883149 33883761 -51811993 + MER4A LTR ERV1 1 664 0 4335 171 47 33 chr15 33883881 33884032 -51811722 - L1MB7 LINE L1 -55 6129 5982 1735 124 0 34 chr15 33884032 33884298 -51811456 - AluSx SINE Alu -12 300 44 4335 171 47 33 chr15 33884298 33885150 -51810604 - L1MB7 LINE L1 -202 5982 5113 24 32 0 0 chr15 33885708 33885739 -51810015 + AT_rich Low_complexity Low_complexity 1 31 0 869 213 0 12 chr15 33885782 33885946 -51809808 - FRAM SINE Alu -14 162 1 1024 199 11 5 chr15 33886762 33886953 -51808801 - MIR SINE MIR -38 224 33 359 336 53 60 chr15 33887409 33887799 -51807955 - L2 LINE L2 -198 3074 2686 477 290 95 68 chr15 33887799 33888020 -51807734 + MIR SINE MIR 2 228 -34 2391 80 7 7 chr15 33888191 33888493 -51807261 + AluSx SINE Alu 1 302 -10 571 306 89 32 chr15 33888679 33889048 -51806706 + L2 LINE L2 2004 2393 -921 1820 158 30 0 chr15 33889772 33890075 -51805679 - AluJo SINE Alu 0 312 1 205 335 130 65 chr15 33890238 33890374 -51805380 + L2 LINE L2 3044 3201 -71 1727 148 26 36 chr15 33890374 33890678 -51805076 - AluJb SINE Alu -11 301 1 205 335 130 65 chr15 33890678 33890756 -51804998 + L2 LINE L2 3201 3272 0 489 218 112 82 chr15 33891175 33891345 -51804409 - MER5A DNA MER1_type -1 188 14 708 216 82 26 chr15 33892494 33892688 -51803066 + L2 LINE L2 2602 2806 -508 1328 291 40 36 chr15 33892838 33893309 -51802445 + L2 LINE L2 2836 3308 -5 22 0 0 0 chr15 33893928 33893950 -51801804 + GC_rich Low_complexity Low_complexity 1 22 0 993 169 62 164 chr15 33894569 33894902 -51800852 - MLT1A1 LTR MaLR -3 362 75 2508 61 0 0 chr15 33894902 33895199 -51800555 + AluY SINE Alu 1 297 -14 993 169 62 164 chr15 33895199 33895268 -51800486 - MLT1A1 LTR MaLR -290 75 1 932 76 8 0 chr15 33895271 33895402 -51800352 + L1PA13 LINE L1 5355 5486 -682 376 100 0 0 chr15 33895400 33895450 -51800304 - L1P4 LINE L1 -608 5555 5506 * 4271 84 4 7 chr15 33895451 33896011 -51799743 + L1PA13 LINE L1 5606 6163 0 1417 76 32 0 chr15 33896265 33896450 -51799304 + AluY SINE Alu 110 300 -11 264 265 0 0 chr15 33896450 33896499 -51799255 - MER58 DNA MER1_type -337 49 1 896 215 15 133 chr15 33897259 33897575 -51798179 - LTR41 LTR ERVL 0 795 497 1109 173 92 28 chr15 33897648 33897897 -51797857 - LTR41 LTR ERVL -508 265 1 280 352 28 59 chr15 33898064 33898099 -51797655 + L2 LINE L2 2449 2484 -830 1973 133 28 0 chr15 33898099 33898385 -51797369 - AluSq SINE Alu -19 294 1 280 352 28 59 chr15 33898385 33898602 -51797152 + L2 LINE L2 2484 2693 -621 2313 201 91 113 chr15 33898618 33898708 -51797046 - L1MD2 LINE L1 -15 6344 6254 1873 163 3 3 chr15 33898708 33899002 -51796752 - AluSx SINE Alu -17 295 2 2313 201 91 113 chr15 33899002 33899602 -51796152 - L1MD2 LINE L1 -105 6254 5671 1406 160 24 101 chr15 33899602 33899939 -51795815 - AluJo SINE Alu -1 311 1 2313 201 91 113 chr15 33899939 33900046 -51795708 - L1MD2 LINE L1 -688 5671 5563 590 336 88 47 chr15 33900046 33900139 -51795615 + L2 LINE L2 2688 2776 -496 2112 98 22 38 chr15 33900139 33900457 -51795297 - AluSp SINE Alu 0 313 1 590 336 88 47 chr15 33900457 33900926 -51794828 + L2 LINE L2 2776 3272 0 1213 145 0 78 chr15 33901213 33901255 -51794499 + AluJo SINE Alu 88 132 -180 1879 143 0 7 chr15 33901255 33901562 -51794192 - AluSx SINE Alu -7 305 1 1213 145 0 78 chr15 33901562 33901761 -51793993 + AluJo SINE Alu 132 310 -2 2394 79 10 0 chr15 33902341 33902646 -51793108 - AluSq SINE Alu -5 308 1 1462 154 44 88 chr15 33902805 33903141 -51792613 - L1MB7 LINE L1 -16 6168 5852 2637 42 0 0 chr15 33903141 33903452 -51792302 - AluY SINE Alu 0 311 1 1462 154 44 88 chr15 33903452 33903523 -51792231 - L1MB7 LINE L1 -332 5852 5779 3826 231 83 38 chr15 33903540 33905018 -51790736 - L1MC4 LINE L1 -5 8037 6493 1157 157 157 43 chr15 33905558 33905743 -51790011 + MER46B DNA MER2_type 1 116 -2615 1911 115 18 11 chr15 33905743 33906042 -51789712 + AluSx SINE Alu 1 301 0 1157 157 157 43 chr15 33906042 33906179 -51789575 + MER46B DNA MER2_type 116 236 0 1560 183 25 7 chr15 33906716 33906990 -51788764 + AluJb SINE Alu 1 279 -33 263 135 0 0 chr15 33906990 33907027 -51788727 + Alu SINE Alu 245 281 -21 1979 125 45 3 chr15 33907076 33907364 -51788390 - AluSq SINE Alu -13 300 1 238 276 94 34 chr15 33907402 33907667 -51788087 - L1M4 LINE L1 -2286 3860 3580 624 147 0 0 chr15 33907720 33907815 -51787939 + AluJ/FLAM SINE Alu 1 95 -217 3740 95 3 2 chr15 33907845 33908413 -51787341 + L1P LINE L1 3464 4032 -2114 1724 98 43 120 chr15 33908432 33908757 -51786997 - AluYb8 SINE Alu -18 300 1 4130 198 50 17 chr15 33908757 33909592 -51786162 - L1MA9 LINE L1 -433 5879 5073 1485 165 4 23 chr15 33909592 33909852 -51785902 - AluJo SINE Alu -9 303 49 4130 198 50 17 chr15 33909852 33910232 -51785522 - L1MA9 LINE L1 -1239 5073 4707 2256 90 3 0 chr15 33910232 33910521 -51785233 - AluY SINE Alu -20 291 2 4130 198 50 17 chr15 33910521 33910802 -51784952 - L1MA9 LINE L1 -1605 4707 4280 2207 130 0 10 chr15 33910994 33911302 -51784452 - AluSx SINE Alu -7 305 1 2239 116 0 0 chr15 33911310 33911613 -51784141 - AluSx SINE Alu -9 303 1 2195 178 44 14 chr15 33911613 33912050 -51783704 - L1MB8 LINE L1 -242 5936 5481 2002 157 0 7 chr15 33912050 33912350 -51783404 - AluSx SINE Alu -14 298 1 2195 178 44 14 chr15 33912350 33912411 -51783343 - L1MB8 LINE L1 -697 5481 5423 665 326 101 38 chr15 33912411 33912648 -51783106 - HAL1 LINE L1 -732 1775 1554 2404 101 0 0 chr15 33912648 33912954 -51782800 - AluSg SINE Alu -4 306 1 665 326 101 38 chr15 33912954 33913222 -51782532 - HAL1 LINE L1 -953 1554 1238 234 192 27 14 chr15 33913242 33913315 -51782439 - L1MEd LINE L1 -5041 1078 1005 285 210 93 86 chr15 33913498 33913660 -51782094 - L1MEd LINE L1 -5935 184 22 24 32 0 0 chr15 33913660 33913691 -51782063 + AT_rich Low_complexity Low_complexity 1 31 0 468 0 0 0 chr15 33915147 33915199 -51780555 + (TA)n Simple_repeat Simple_repeat 2 53 0 184 180 120 40 chr15 33915538 33915588 -51780166 - MIR SINE MIR -112 150 97 198 0 0 0 chr15 33916209 33916231 -51779523 + (T)n Simple_repeat Simple_repeat 1 22 0 256 279 221 12 chr15 33916279 33916451 -51779303 + MIR SINE MIR 43 250 -12 1867 199 72 27 chr15 33917320 33917803 -51777951 + MLT1D LTR MaLR 1 505 0 513 178 15 59 chr15 33923325 33923460 -51772294 - L1PA16 LINE L1 -2 6164 6036 2217 113 0 0 chr15 33923524 33923826 -51771928 + AluSg1 SINE Alu 1 302 -7 1963 93 67 8 chr15 33923828 33924137 -51771617 + AluY SINE Alu 1 325 0 2236 96 3 42 chr15 33924669 33924836 -51770918 - AluSp SINE Alu -12 301 150 2347 75 7 26 chr15 33924836 33925142 -51770612 - AluY SINE Alu -11 300 1 2236 96 3 42 chr15 33925142 33925287 -51770467 - AluSp SINE Alu -163 150 1 712 200 54 29 chr15 33925603 33925737 -51770017 - MER58C DNA MER1_type -2205 215 73 2275 94 7 0 chr15 33925737 33926035 -51769719 + AluSq SINE Alu 1 300 -13 712 200 54 29 chr15 33926035 33926105 -51769649 - MER58C DNA MER1_type -2347 73 6 22 0 0 0 chr15 33927366 33927388 -51768366 + AT_rich Low_complexity Low_complexity 1 22 0 1605 189 0 36 chr15 33927902 33928078 -51767676 - AluJo SINE Alu -13 299 137 2275 91 3 0 chr15 33928078 33928374 -51767380 - AluSx SINE Alu -15 297 1 1605 189 0 36 chr15 33928374 33928504 -51767250 - AluJo SINE Alu -175 137 4 2094 125 24 0 chr15 33928585 33928874 -51766880 + AluSx SINE Alu 1 296 -16 2245 95 0 46 chr15 33928913 33929239 -51766515 + AluY SINE Alu 1 311 0 26 0 0 0 chr15 33929616 33929642 -51766112 + AT_rich Low_complexity Low_complexity 1 26 0 2356 45 6 54 chr15 33929778 33930091 -51765663 - AluY SINE Alu -13 298 1 355 266 175 0 chr15 33930276 33930430 -51765324 - MER5A DNA MER1_type 0 189 9 231 127 111 0 chr15 33931547 33931610 -51764144 - L1ME4a LINE L1 -3 6118 6049 549 0 0 0 chr15 33931827 33931888 -51763866 + (TG)n Simple_repeat Simple_repeat 2 62 0 422 174 245 0 chr15 33932012 33932110 -51763644 - FLAM_A SINE Alu -11 122 1 2139 125 3 16 chr15 33932271 33932436 -51763318 - AluSx SINE Alu -13 299 138 2478 70 0 0 chr15 33932436 33932737 -51763017 - AluY SINE Alu -10 301 1 2139 125 3 16 chr15 33932737 33932874 -51762880 - AluSx SINE Alu -174 138 1 263 242 242 0 chr15 33934196 33934287 -51761467 + MIR SINE MIR 86 198 -64 1252 264 260 16 chr15 33934441 33935381 -51760373 + L2 LINE L2 2121 3312 -1 270 214 43 14 chr15 33935452 33935522 -51760232 + MER103 DNA DNA 90 161 -5 946 94 16 0 chr15 33935710 33935837 -51759917 - AluSc SINE Alu -60 249 121 2252 105 3 3 chr15 33936515 33936819 -51758935 - AluSq SINE Alu -9 304 1 2105 105 17 7 chr15 33937010 33937305 -51758449 + AluSx SINE Alu 1 298 -14 270 0 0 0 chr15 33937526 33937556 -51758198 + (TG)n Simple_repeat Simple_repeat 2 31 0 2158 123 0 0 chr15 33937556 33937841 -51757913 - AluSg SINE Alu -25 285 1 456 228 107 8 chr15 33937889 33938029 -51757725 + MLT1H LTR MaLR 413 549 0 403 114 0 43 chr15 33938483 33938553 -51757201 + AluSp SINE Alu 120 186 -127 333 314 55 68 chr15 33938859 33939079 -51756675 + L2 LINE L2 2444 2660 -654 2106 117 3 0 chr15 33939116 33939398 -51756356 - AluSq SINE Alu -30 283 1 285 235 147 0 chr15 33939993 33940095 -51755659 - L1ME LINE L1 -473 5648 5532 230 271 17 0 chr15 33940299 33940358 -51755396 + L3 LINE CR1 904 963 -614 295 338 51 0 chr15 33940485 33940594 -51755160 - MIR3 SINE MIR -43 165 51 324 0 0 0 chr15 33941407 33941443 -51754311 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 1191 203 30 38 chr15 33941448 33941685 -51754069 - AluJo SINE Alu -37 275 41 1471 147 18 139 chr15 33942474 33942869 -51752885 - MER7A DNA MER2_type 0 346 2 1629 68 5 40 chr15 33943179 33943401 -51752353 + AluSx SINE Alu 1 214 -98 2871 3 0 0 chr15 33944344 33944653 -51751101 + AluYb8 SINE Alu 1 309 -9 1951 121 71 3 chr15 33944784 33945066 -51750688 + AluSx SINE Alu 1 301 -11 1361 203 68 18 chr15 33945260 33945541 -51750213 + AluJo SINE Alu 5 299 -13 21 36 0 0 chr15 33945611 33945639 -51750115 + AT_rich Low_complexity Low_complexity 1 28 0 1787 172 34 0 chr15 33945878 33946169 -51749585 - AluJo SINE Alu -11 301 1 1466 183 95 4 chr15 33946310 33946584 -51749170 - AluJb SINE Alu -13 299 1 2616 24 3 0 chr15 33947599 33947896 -51747858 + AluY SINE Alu 1 298 -13 2003 140 0 22 chr15 33948443 33948757 -51746997 - AluSc SINE Alu -2 307 1 2484 63 0 0 chr15 33948768 33949067 -51746687 - AluY SINE Alu -12 299 1 1894 129 54 0 chr15 33949457 33949736 -51746018 + AluSq SINE Alu 1 294 -19 181 262 0 0 chr15 33949786 33949828 -51745926 - L2 LINE L2 -10 3303 3262 430 333 31 5 chr15 33949923 33950115 -51745639 + MIR SINE MIR 66 262 0 2209 99 26 0 chr15 33951262 33951564 -51744190 + AluSg SINE Alu 1 310 0 656 254 39 47 chr15 33951673 33951905 -51743849 + MIR SINE MIR 1 230 -32 1822 140 0 25 chr15 33951952 33952277 -51743477 + AluSx SINE Alu 5 322 0 197 333 83 47 chr15 33952748 33952940 -51742814 - L2 LINE L2 -338 2976 2778 1818 177 0 7 chr15 33953016 33953321 -51742433 + AluJo SINE Alu 1 303 -9 2313 90 0 3 chr15 33955797 33956097 -51739657 - AluSq SINE Alu -14 299 1 753 249 160 50 chr15 33958272 33958734 -51737020 - L1MC4 LINE L1 -94 7948 7436 2269 78 0 3 chr15 33958846 33959128 -51736626 - AluY SINE Alu -17 294 14 21 36 0 0 chr15 33960169 33960197 -51735557 + AT_rich Low_complexity Low_complexity 1 28 0 365 232 30 60 chr15 33960209 33960377 -51735377 - L1ME4a LINE L1 -34 6087 5925 274 167 0 0 chr15 33960456 33960498 -51735256 - 5S rRNA rRNA -79 42 1 250 248 53 68 chr15 33960499 33960632 -51735122 - L1ME4a LINE L1 -319 5802 5672 1937 126 3 17 chr15 33960653 33960947 -51734807 - AluSg SINE Alu -16 294 5 226 344 70 39 chr15 33961719 33961978 -51733776 + L2 LINE L2 2965 3231 -82 1927 112 43 0 chr15 33961979 33962257 -51733497 + AluSx SINE Alu 1 290 -22 279 0 0 0 chr15 33962263 33962294 -51733460 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 320 225 71 47 chr15 33962314 33962483 -51733271 - Charlie7 DNA MER1_type 0 2612 2440 256 289 70 51 chr15 33965240 33965396 -51730358 + L2 LINE L2 2245 2403 -911 329 292 247 6 chr15 33965470 33965648 -51730106 - MIR SINE MIR -10 252 32 1601 219 48 24 chr15 33965649 33965865 -51729889 - L1ME1 LINE L1 -68 6098 5889 2307 96 0 19 chr15 33965865 33966177 -51729577 - AluSq SINE Alu -7 306 1 1601 219 48 24 chr15 33966177 33966446 -51729308 - L1ME1 LINE L1 -277 5889 5676 2239 103 7 3 chr15 33966478 33966778 -51728976 - AluSq SINE Alu -12 301 1 22 0 0 0 chr15 33966791 33966813 -51728941 + AT_rich Low_complexity Low_complexity 1 22 0 1580 188 10 20 chr15 33966917 33967220 -51728534 - AluJb SINE Alu -11 301 2 2328 78 3 10 chr15 33967311 33967618 -51728136 + AluY SINE Alu 1 305 -6 354 230 92 0 chr15 33967662 33967749 -51728005 - MER5A DNA MER1_type -91 98 4 1997 132 0 30 chr15 33967878 33968174 -51727580 - AluSx SINE Alu -10 302 16 1286 173 0 26 chr15 33968213 33968383 -51727371 + MER58B DNA MER1_type 117 281 -2139 1219 234 34 52 chr15 33968383 33968764 -51726990 - MLT1A2 LTR MaLR 0 374 1 1286 173 0 26 chr15 33968764 33968824 -51726930 + MER58B DNA MER1_type 281 341 0 316 228 218 10 chr15 33968852 33968953 -51726801 + MER5A DNA MER1_type 61 182 -7 330 269 60 45 chr15 33969088 33969222 -51726532 - MIR SINE MIR 0 262 127 1727 154 13 13 chr15 33970137 33970435 -51725319 + AluJb SINE Alu 1 298 -14 22 35 0 0 chr15 33970445 33970474 -51725280 + AT_rich Low_complexity Low_complexity 1 29 0 311 354 27 14 chr15 33971978 33972125 -51723629 - L3 LINE CR1 -15 1562 1414 232 283 0 0 chr15 33972448 33972508 -51723246 + (TA)n Simple_repeat Simple_repeat 1 60 0 2176 86 7 4 chr15 33972952 33973231 -51722523 + AluSp SINE Alu 1 280 -33 408 20 0 0 chr15 33973231 33973280 -51722474 + (CA)n Simple_repeat Simple_repeat 1 49 0 2177 109 0 19 chr15 33973815 33974126 -51721628 - AluSx SINE Alu -7 305 1 22 0 0 0 chr15 33975129 33975151 -51720603 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr15 33975585 33975632 -51720122 + AT_rich Low_complexity Low_complexity 1 47 0 464 288 38 38 chr15 33976545 33976705 -51719049 + MIR SINE MIR 14 173 -89 25 31 0 0 chr15 33977629 33977661 -51718093 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr15 33979708 33979743 -51716011 + AT_rich Low_complexity Low_complexity 1 35 0 32 0 0 0 chr15 33980454 33980486 -51715268 + AT_rich Low_complexity Low_complexity 1 32 0 1470 179 32 54 chr15 33980558 33980871 -51714883 - AluJo SINE Alu -6 306 1 288 308 64 32 chr15 33981199 33981355 -51714399 - MIR3 SINE MIR 0 208 48 27 29 0 0 chr15 33982974 33983008 -51712746 + AT_rich Low_complexity Low_complexity 1 34 0 2491 147 7 9 chr15 33983049 33983497 -51712257 - L1MB8 LINE L1 0 6178 5732 30 27 0 0 chr15 33983531 33983568 -51712186 + AT_rich Low_complexity Low_complexity 1 37 0 731 250 93 31 chr15 33983569 33983957 -51711797 + HAL1b LINE L1 902 1313 -35 371 215 0 0 chr15 33984185 33984250 -51711504 - MER2 DNA MER2_type -1 344 280 909 130 19 0 chr15 33984281 33984435 -51711319 - MER2 DNA MER2_type -139 206 50 2025 125 7 0 chr15 33984870 33985188 -51710566 - AluSq SINE Alu 0 320 1 21 0 0 0 chr15 33987460 33987481 -51708273 + AT_rich Low_complexity Low_complexity 1 21 0 1144 194 182 11 chr15 33987796 33988147 -51707607 + Charlie1b DNA MER1_type 112 522 -1 349 392 69 27 chr15 33989031 33989363 -51706391 + L2 LINE L2 2830 3175 -97 188 299 105 62 chr15 33990250 33990574 -51705180 + L2 LINE L2 1542 1879 -1435 336 281 188 60 chr15 33990578 33990886 -51704868 + L2 LINE L2 2020 2287 -1027 2290 98 0 0 chr15 33990886 33991183 -51704571 + AluSc SINE Alu 8 304 -5 336 281 188 60 chr15 33991183 33991469 -51704285 + L2 LINE L2 2287 2690 -624 1159 44 25 13 chr15 33991812 33991971 -51703783 + L1PA6 LINE L1 5993 6153 -1 2357 78 0 3 chr15 33991971 33992267 -51703487 + AluY SINE Alu 1 295 -16 432 265 119 54 chr15 33992606 33992791 -51702963 - L2 LINE L2 0 3313 3117 1140 149 58 10 chr15 33992834 33993042 -51702712 + MER46A DNA MER2_type 17 234 -2 579 284 142 0 chr15 33993116 33993292 -51702462 - MIR SINE MIR -34 228 28 2136 92 46 3 chr15 33993351 33993634 -51702120 + AluSq SINE Alu 1 295 -18 2360 87 0 3 chr15 33993719 33994018 -51701736 + AluSc SINE Alu 1 298 -11 1154 182 4 30 chr15 33994151 33994382 -51701372 + AluJb SINE Alu 83 307 -5 23 54 0 0 chr15 33994437 33994474 -51701280 + AT_rich Low_complexity Low_complexity 1 37 0 2025 118 3 32 chr15 33995155 33995469 -51700285 - AluSx SINE Alu -7 305 1 2102 124 3 0 chr15 33995495 33995793 -51699961 + AluSp SINE Alu 1 299 -14 459 275 74 48 chr15 33995894 33996123 -51699631 + MIR SINE MIR 4 238 -24 26 30 0 0 chr15 33996837 33996870 -51698884 + AT_rich Low_complexity Low_complexity 1 33 0 1731 163 32 3 chr15 33998017 33998300 -51697454 + AluJb SINE Alu 1 291 -21 1472 196 50 7 chr15 33998313 33998593 -51697161 + AluJb SINE Alu 1 292 -20 393 300 55 9 chr15 33999590 33999700 -51696054 + L2 LINE L2 3153 3267 -5 1861 112 77 0 chr15 33999823 34000110 -51695644 - AluSx SINE Alu -3 309 1 281 294 154 7 chr15 34000111 34000254 -51695500 + MIR SINE MIR 96 259 -3 1823 164 0 0 chr15 34000630 34000911 -51694843 - AluJb SINE Alu -31 281 1 227 182 0 0 chr15 34001239 34001283 -51694471 + HY1 scRNA scRNA 67 110 -2 207 0 0 0 chr15 34001285 34001308 -51694446 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3370 206 40 59 chr15 34002254 34002820 -51692934 + L1ME1 LINE L1 4633 5208 -958 1581 189 17 0 chr15 34002820 34003116 -51692638 + AluJb SINE Alu 1 301 -11 3370 206 40 59 chr15 34003116 34003575 -51692179 + L1ME1 LINE L1 5208 5674 -492 2177 94 4 0 chr15 34003575 34003855 -51691899 + AluSg SINE Alu 1 281 -29 226 0 0 0 chr15 34003855 34003880 -51691874 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3370 206 40 59 chr15 34003880 34004412 -51691342 + L1ME1 LINE L1 5674 6151 -15 180 152 0 0 chr15 34005108 34005141 -51690613 + (CA)n Simple_repeat Simple_repeat 2 34 0 264 316 140 15 chr15 34007132 34007268 -51688486 - MIR SINE MIR -57 205 53 1746 121 81 11 chr15 34007585 34007858 -51687896 - AluSx SINE Alu -20 292 1 2101 93 26 58 chr15 34007969 34008281 -51687473 - AluSg SINE Alu -8 302 1 1301 188 26 79 chr15 34008592 34008896 -51686858 + AluJo SINE Alu 1 288 -24 372 236 250 34 chr15 34009017 34009165 -51686589 + MER5A DNA MER1_type 9 188 -1 235 329 12 0 chr15 34009165 34009248 -51686506 - L2 LINE L2 -523 2791 2708 22 0 0 0 chr15 34009453 34009475 -51686279 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr15 34010270 34010299 -51685455 + (A)n Simple_repeat Simple_repeat 1 29 0 2250 95 0 3 chr15 34010448 34010742 -51685012 + AluSg SINE Alu 1 293 -17 2253 119 0 3 chr15 34010984 34011295 -51684459 + AluSx SINE Alu 1 310 -2 203 60 80 0 chr15 34011458 34011508 -51684246 + (TA)n Simple_repeat Simple_repeat 1 54 0 2044 209 86 39 chr15 34011549 34012133 -51683621 + L1ME1 LINE L1 5550 6160 -6 2172 115 0 47 chr15 34013020 34013342 -51682412 - AluSq SINE Alu -6 307 1 518 313 86 58 chr15 34013553 34013985 -51681769 + MLT1H LTR MaLR 106 549 0 660 306 122 14 chr15 34015320 34016107 -51679647 - L1ME3A LINE L1 -222 5948 5073 204 143 0 0 chr15 34016306 34016348 -51679406 + (TC)n Simple_repeat Simple_repeat 1 42 0 1541 179 0 21 chr15 34016359 34016644 -51679110 - AluJo SINE Alu -32 280 2 931 144 72 0 chr15 34018208 34018388 -51677366 + AluSg/x SINE Alu 135 325 0 234 194 42 42 chr15 34018915 34018987 -51676767 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 764 73 3 22 chr15 34019918 34020033 -51675721 + LTR7 LTR ERV1 253 448 -2 1531 83 0 5 chr15 34020036 34020241 -51675513 + HERVH LTR ERV1 2 205 -7508 * 2391 88 0 3 chr15 34020231 34020560 -51675194 + HERVH LTR ERV1 915 1242 -6471 1081 89 11 28 chr15 34020560 34020739 -51675015 + LTR7 LTR ERV1 239 414 -36 2137 127 0 7 chr15 34020859 34021159 -51674595 - AluSx SINE Alu -14 298 1 1971 120 11 11 chr15 34021891 34022204 -51673550 + AluSq SINE Alu 1 313 0 1700 104 104 19 chr15 34022211 34022471 -51673283 + AluSx SINE Alu 1 282 -30 236 75 0 25 chr15 34022474 34022514 -51673240 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1231 117 168 0 chr15 34022818 34023015 -51672739 + MER30 DNA MER1_type 1 230 0 531 377 77 2 chr15 34023015 34023469 -51672285 + L2 LINE L2 2246 2733 -581 2547 120 19 16 chr15 34023746 34024120 -51671634 - THE1C LTR MaLR 0 375 1 527 196 206 22 chr15 34024148 34024332 -51671422 + L1MC4 LINE L1 7825 8042 0 186 222 22 0 chr15 34024479 34024524 -51671230 + L2 LINE L2 3268 3313 0 187 344 54 0 chr15 34024561 34024654 -51671100 - L2 LINE L2 -2 3311 3214 377 279 61 0 chr15 34025304 34025451 -51670303 + L1MEd LINE L1 938 1093 -5279 1532 219 25 12 chr15 34025467 34025855 -51669899 + L1MEd LINE L1 1185 1535 -4849 2396 97 0 3 chr15 34025856 34026166 -51669588 - AluSg SINE Alu -1 309 1 1102 223 41 20 chr15 34026167 34026512 -51669242 - L1M4 LINE L1 -3372 2774 2423 * 1486 226 51 16 chr15 34026509 34026584 -51669170 + L1MEd LINE L1 1521 1592 -4792 1771 179 3 25 chr15 34026584 34026903 -51668851 + AluSx SINE Alu 1 312 0 1486 226 51 16 chr15 34026903 34027513 -51668241 + L1MEd LINE L1 1592 2325 -4059 1171 172 14 14 chr15 34027513 34027722 -51668032 + AluJb SINE Alu 87 295 -17 855 179 26 47 chr15 34027730 34027902 -51667852 + L1MEd LINE L1 2320 2475 -3907 1907 135 0 40 chr15 34027902 34028061 -51667693 - AluSx SINE Alu -27 285 142 2088 126 7 0 chr15 34028061 34028355 -51667399 - AluSc SINE Alu -13 296 1 1907 135 0 40 chr15 34028355 34028492 -51667262 - AluSx SINE Alu -170 142 1 855 179 26 47 chr15 34028492 34028640 -51667114 + L1MEd LINE L1 2475 2625 -3757 771 97 8 81 chr15 34028649 34028773 -51666981 + AluSp/q SINE Alu 185 299 -14 567 206 67 6 chr15 34028774 34028954 -51666800 + L1MEd LINE L1 3001 3191 -3191 837 146 0 22 chr15 34028954 34029091 -51666663 + AluSp/q SINE Alu 175 308 -5 4294 233 55 44 chr15 34029095 34029628 -51666126 + L1MEd LINE L1 3191 3716 -2666 2144 124 0 0 chr15 34029628 34029926 -51665828 + AluSx SINE Alu 1 298 -14 4294 233 55 44 chr15 34029926 34029981 -51665773 + L1MEd LINE L1 3716 3769 -2613 1953 147 13 3 chr15 34029981 34030280 -51665474 - AluSx SINE Alu -10 302 1 4294 233 55 44 chr15 34030280 34031186 -51664568 + L1MEd LINE L1 3769 4703 -1679 1871 168 88 8 chr15 34031225 34031600 -51664154 + L1MB7 LINE L1 5731 6135 -49 491 188 146 0 chr15 34031602 34031698 -51664056 + FLAM_A SINE Alu 2 111 -31 255 31 0 0 chr15 34031703 34031735 -51664019 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 2005 131 3 0 chr15 34032226 34032517 -51663237 - AluSq SINE Alu -21 292 1 2224 92 0 7 chr15 34032634 34032926 -51662828 + AluY SINE Alu 1 290 -21 258 313 0 12 chr15 34032951 34033034 -51662720 + MIR SINE MIR 64 145 -63 2317 112 0 0 chr15 34033479 34033784 -51661970 - AluSg SINE Alu -5 305 1 1965 160 47 21 chr15 34033961 34034299 -51661455 - MER7A DNA MER2_type 0 346 2 2150 124 13 0 chr15 34034302 34034600 -51661154 - AluSx SINE Alu -10 302 1 2375 87 3 0 chr15 34034609 34034909 -51660845 - AluSp SINE Alu -12 301 1 1252 112 6 6 chr15 34035045 34035215 -51660539 + AluSc SINE Alu 1 170 -139 1137 75 0 0 chr15 34035319 34035453 -51660301 + AluSc SINE Alu 152 285 -24 2238 113 3 13 chr15 34035464 34035775 -51659979 + AluSp SINE Alu 1 308 -5 1624 203 0 0 chr15 34035786 34036062 -51659692 + AluJo SINE Alu 3 278 -34 291 71 0 0 chr15 34036065 34036107 -51659647 + (CAA)n Simple_repeat Simple_repeat 1 42 0 882 203 130 5 chr15 34036238 34036430 -51659324 + MER20 DNA MER1_type 1 216 -3 25 51 0 0 chr15 34036822 34036861 -51658893 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr15 34037625 34037648 -51658106 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr15 34037957 34037982 -51657772 + (A)n Simple_repeat Simple_repeat 1 25 0 21 36 0 0 chr15 34038643 34038671 -51657083 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr15 34040218 34040245 -51655509 + (TC)n Simple_repeat Simple_repeat 2 28 0 216 0 0 0 chr15 34040244 34040268 -51655486 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 275 0 29 0 chr15 34040267 34040302 -51655452 + (CA)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr15 34040313 34040335 -51655419 + (TA)n Simple_repeat Simple_repeat 2 23 0 24 32 0 0 chr15 34040403 34040434 -51655320 + AT_rich Low_complexity Low_complexity 1 31 0 326 218 29 23 chr15 34041016 34041190 -51654564 + GA-rich Low_complexity Low_complexity 3 177 0 709 169 39 15 chr15 34041507 34041637 -51654117 - FLAM_A SINE Alu 0 133 1 21 0 0 0 chr15 34044686 34044707 -51651047 + GC_rich Low_complexity Low_complexity 1 21 0 1278 125 59 70 chr15 34046499 34046755 -51648999 + AluJo SINE Alu 6 258 -54 2171 107 20 0 chr15 34047476 34047774 -51647980 + AluSx SINE Alu 2 305 -7 336 262 97 0 chr15 34047875 34047978 -51647776 - MARNA DNA Mariner -206 380 268 225 86 0 0 chr15 34048430 34048465 -51647289 - L2 LINE L2 -5 3308 3274 2259 79 41 0 chr15 34048588 34048879 -51646875 + AluYa5 SINE Alu 1 303 -8 395 80 65 62 chr15 34049118 34049207 -51646547 + L1M3 LINE L1 5516 5607 -561 1972 146 0 10 chr15 34049207 34049509 -51646245 + AluSx SINE Alu 1 299 -13 744 233 0 0 chr15 34049517 34049650 -51646104 + FLAM_A SINE Alu 1 133 0 262 77 58 0 chr15 34049655 34049707 -51646047 + L1MB4 LINE L1 6125 6179 -1 1013 98 15 0 chr15 34049744 34049877 -51645877 + AluSq/x SINE Alu 1 135 -177 2336 72 7 3 chr15 34049877 34050183 -51645571 + AluY SINE Alu 2 308 -3 1287 171 14 110 chr15 34050193 34050539 -51645215 + AluSq SINE Alu 1 313 0 239 279 35 58 chr15 34050564 34050650 -51645104 + L3 LINE CR1 436 519 -1058 293 276 141 54 chr15 34051433 34051618 -51644136 + L3 LINE CR1 538 738 -839 2302 110 0 0 chr15 34051618 34051918 -51643836 + AluSx SINE Alu 1 300 -12 2215 127 0 3 chr15 34052324 34052631 -51643123 + AluSx SINE Alu 1 306 -6 1715 187 112 64 chr15 34052752 34053190 -51642564 - LTR40b LTR ERVL -3 459 1 200 370 80 6 chr15 34053193 34053355 -51642399 - L2 LINE L2 -228 3044 2871 2303 92 10 0 chr15 34053407 34053701 -51642053 - AluY SINE Alu -14 297 1 585 289 53 22 chr15 34053876 34054104 -51641650 - MIR SINE MIR -27 235 1 634 306 80 52 chr15 34054375 34054738 -51641016 + L3 LINE CR1 798 1170 -407 2327 153 9 68 chr15 34054745 34055099 -51640655 + MER47B DNA MER2_type 6 331 -1992 2017 135 20 3 chr15 34055099 34055395 -51640359 - AluSx SINE Alu -11 301 1 2327 153 9 68 chr15 34055395 34055479 -51640275 + MER47B DNA MER2_type 331 418 0 330 247 68 92 chr15 34055511 34055560 -51640194 - MIR SINE MIR -65 143 94 703 116 0 0 chr15 34055560 34055893 -51639861 + AluSx SINE Alu 1 333 0 330 247 68 92 chr15 34055893 34055970 -51639784 - MIR SINE MIR -114 94 16 2175 101 3 3 chr15 34056414 34056720 -51639034 + AluSq SINE Alu 1 306 -7 196 206 0 0 chr15 34057017 34057051 -51638703 + L2 LINE L2 3210 3243 -29 2280 78 0 13 chr15 34058264 34058571 -51637183 - AluY SINE Alu -8 303 1 1910 108 42 3 chr15 34058572 34058859 -51636895 - AluSx SINE Alu -14 298 1 428 106 12 0 chr15 34059518 34059603 -51636151 + (TA)n Simple_repeat Simple_repeat 2 87 0 1985 98 7 7 chr15 34059603 34059890 -51635864 - AluSq SINE Alu -26 287 1 2099 96 0 37 chr15 34059925 34060247 -51635507 + AluY SINE Alu 1 310 -1 1135 127 0 6 chr15 34060254 34060435 -51635319 + AluSg/x SINE Alu 118 297 -13 2096 78 3 7 chr15 34060435 34060728 -51635026 + AluY SINE Alu 1 292 -19 2573 101 2 55 chr15 34060746 34061144 -51634610 + MER48 LTR ERV1 8 384 -3 2007 97 0 53 chr15 34061210 34061529 -51634225 - AluSc SINE Alu -7 302 1 1546 256 81 16 chr15 34061787 34062294 -51633460 - HAL1 LINE L1 -607 1900 1361 1456 177 27 24 chr15 34062322 34062616 -51633138 - AluJo SINE Alu -17 295 1 23 0 0 0 chr15 34062861 34062884 -51632870 + AT_rich Low_complexity Low_complexity 1 23 0 2255 78 3 19 chr15 34062987 34063295 -51632459 + AluY SINE Alu 3 305 -6 2058 116 3 16 chr15 34063306 34063616 -51632138 - AluSq SINE Alu -7 306 1 216 0 0 0 chr15 34063805 34063829 -51631925 + (CA)n Simple_repeat Simple_repeat 1 24 0 2029 127 0 13 chr15 34064309 34064625 -51631129 + AluSx SINE Alu 1 312 0 1094 116 83 6 chr15 34064764 34064945 -51630809 - AluSg/x SINE Alu -6 304 110 1984 132 0 3 chr15 34065014 34065310 -51630444 + AluSx SINE Alu 1 295 -17 2020 102 7 10 chr15 34065315 34065608 -51630146 + AluSc SINE Alu 3 294 -15 810 248 5 59 chr15 34065624 34065734 -51630020 + MIR SINE MIR 42 136 -126 2106 115 0 0 chr15 34065734 34066030 -51629724 + AluSc SINE Alu 1 296 -13 810 248 5 59 chr15 34066030 34066141 -51629613 + MIR SINE MIR 136 251 -11 287 213 184 64 chr15 34066613 34066754 -51629000 - MLT1J1 LTR MaLR 0 446 289 * 655 242 31 0 chr15 34066752 34066913 -51628841 - MLT1J2 LTR MaLR -247 203 38 1924 151 3 0 chr15 34066915 34067220 -51628534 + AluSq SINE Alu 1 306 -7 1062 153 11 0 chr15 34067220 34067397 -51628357 + AluSg/x SINE Alu 134 312 0 364 227 0 0 chr15 34067683 34067749 -51628005 - Tigger7 DNA MER2_type -492 213 148 687 123 0 0 chr15 34067749 34067855 -51627899 - AluSx SINE Alu -15 297 192 * 776 103 0 0 chr15 34067852 34067959 -51627795 - AluSx SINE Alu -206 107 1 402 147 53 27 chr15 34067959 34068025 -51627729 - Tigger7 DNA MER2_type -2331 156 86 1900 118 14 0 chr15 34068025 34068322 -51627432 - AluSx SINE Alu -11 301 1 1017 201 78 78 chr15 34068324 34068643 -51627111 - MLT1D LTR MaLR -186 319 1 1667 233 95 7 chr15 34068643 34069063 -51626691 - MLT1F LTR MaLR -85 457 1 242 213 49 16 chr15 34069447 34069508 -51626246 + MER41A LTR ERV1 400 462 -92 2199 110 0 0 chr15 34069642 34069942 -51625812 - AluSx SINE Alu -12 300 1 930 132 15 56 chr15 34069942 34070139 -51625615 - AluSp SINE Alu -11 302 114 1900 156 0 0 chr15 34070165 34070466 -51625288 - AluSx SINE Alu -9 303 3 2093 110 0 3 chr15 34071330 34071630 -51624124 + AluSx SINE Alu 1 299 -13 810 184 7 26 chr15 34071698 34071850 -51623904 - FAM SINE Alu -36 149 1 1126 93 0 13 chr15 34072109 34072260 -51623494 + AluSq/x SINE Alu 1 149 -163 391 83 0 0 chr15 34072260 34072308 -51623446 + AluY SINE Alu 202 249 -52 1112 156 18 36 chr15 34072308 34072532 -51623222 + AluSq SINE Alu 85 304 -9 221 309 9 142 chr15 34073484 34073814 -51621940 - L2 LINE L2 -70 3202 2917 2392 67 0 6 chr15 34073821 34074133 -51621621 + AluY SINE Alu 1 310 -1 1236 171 146 25 chr15 34074215 34074281 -51621473 + AluJb SINE Alu 1 58 -254 2208 103 3 0 chr15 34074281 34074583 -51621171 + AluSp SINE Alu 1 303 -10 1236 171 146 25 chr15 34074583 34074791 -51620963 + AluJb SINE Alu 58 308 -4 2311 88 0 3 chr15 34074912 34075220 -51620534 + AluY SINE Alu 1 307 -4 1466 204 6 29 chr15 34075587 34075901 -51619853 + AluJo SINE Alu 6 312 0 190 309 104 55 chr15 34076019 34076239 -51619515 + L2 LINE L2 2926 3156 -116 1964 117 3 0 chr15 34076800 34077082 -51618672 + AluSx SINE Alu 23 305 -7 913 248 4 32 chr15 34077178 34077456 -51618298 - L1MD3 LINE L1 -12 7983 7714 357 323 86 45 chr15 34077581 34077801 -51617953 - L1M4 LINE L1 -1312 4834 4606 1865 179 3 0 chr15 34077803 34078110 -51617644 + AluSx SINE Alu 1 308 -4 443 270 237 50 chr15 34078647 34079010 -51616744 + L2 LINE L2 2840 3270 -2 1898 128 0 4 chr15 34079143 34079424 -51616330 - AluSg SINE Alu -30 280 1 2051 127 0 10 chr15 34079426 34079733 -51616021 - AluSx SINE Alu -8 304 1 552 257 44 7 chr15 34079733 34079869 -51615885 - MIR SINE MIR -37 225 85 299 337 10 0 chr15 34079948 34080049 -51615705 + MIR3 SINE MIR 92 193 -15 811 183 0 0 chr15 34080147 34080284 -51615470 + FRAM SINE Alu 1 136 -40 432 130 0 0 chr15 34080290 34080359 -51615395 + (GA)n Simple_repeat Simple_repeat 1 69 0 342 70 21 4 chr15 34081120 34081179 -51614575 - Alu SINE Alu -256 46 1 557 219 41 41 chr15 34081181 34081197 -51614557 - MIR SINE MIR -98 164 149 2650 164 20 4 chr15 34081197 34081472 -51614282 - MLT1C LTR MaLR 0 467 181 2379 52 10 16 chr15 34081472 34081777 -51613977 - AluY SINE Alu -8 303 1 2650 164 20 4 chr15 34081777 34081958 -51613796 - MLT1C LTR MaLR -286 181 4 557 219 41 41 chr15 34081958 34082087 -51613667 - MIR SINE MIR -112 150 19 237 297 135 8 chr15 34082421 34082578 -51613176 - MIR SINE MIR -62 146 16 194 347 14 0 chr15 34083337 34083409 -51612345 - L2 LINE L2 -1537 1777 1705 481 297 88 17 chr15 34083676 34083915 -51611839 + MIR SINE MIR 5 260 -2 468 0 0 0 chr15 34084254 34084306 -51611448 + (CA)n Simple_repeat Simple_repeat 2 53 0 2096 117 10 3 chr15 34085607 34085916 -51609838 + AluSx SINE Alu 1 311 -1 567 230 96 28 chr15 34086399 34086577 -51609177 - MIR SINE MIR 0 262 73 830 143 0 48 chr15 34086594 34086741 -51609013 + AluJb SINE Alu 11 150 -162 2041 103 0 0 chr15 34087300 34087581 -51608173 + AluSx SINE Alu 1 281 -31 1493 135 17 76 chr15 34087954 34088077 -51607677 + AluJb SINE Alu 7 136 -176 2020 100 25 0 chr15 34088077 34088357 -51607397 + AluSg SINE Alu 1 287 -23 1493 135 17 76 chr15 34088357 34088522 -51607232 + AluJb SINE Alu 136 278 -34 1187 162 0 5 chr15 34088636 34088858 -51606896 + AluJb SINE Alu 86 306 0 2142 107 125 41 chr15 34089972 34090364 -51605390 + MSTA LTR MaLR 3 427 -1 378 292 0 54 chr15 34090496 34090516 -51605238 - L2 LINE L2 -8 3305 3285 1362 218 78 48 chr15 34090516 34090556 -51605198 - MLT2D LTR ERVL 0 414 377 267 103 0 0 chr15 34090556 34090595 -51605159 + (CA)n Simple_repeat Simple_repeat 1 39 0 1362 218 78 48 chr15 34090595 34090866 -51604888 - MLT2D LTR ERVL -37 377 86 2387 71 0 0 chr15 34090866 34091177 -51604577 + AluY SINE Alu 1 311 0 1362 218 78 48 chr15 34091177 34091264 -51604490 - MLT2D LTR ERVL -328 86 3 378 292 0 54 chr15 34091264 34091373 -51604381 - L2 LINE L2 -28 3285 3183 190 231 55 121 chr15 34091588 34091679 -51604075 - MIR SINE MIR -55 153 69 1713 186 23 32 chr15 34091810 34092154 -51603600 - MLT1A1 LTR MaLR -24 341 1 237 211 40 79 chr15 34093190 34093266 -51602488 - MIR SINE MIR -3 259 187 453 273 0 0 chr15 34093272 34093371 -51602383 + L2 LINE L2 3202 3300 -13 1690 159 44 14 chr15 34093397 34093693 -51602061 - AluJo SINE Alu -7 305 1 2239 139 31 19 chr15 34093737 34094097 -51601657 + THE1B LTR MaLR 1 364 0 2276 68 3 0 chr15 34094097 34094389 -51601365 + THE1B-int LTR MaLR 1 293 -1287 * 4193 111 0 0 chr15 34094386 34094946 -51600808 + THE1B-int LTR MaLR 668 1227 -353 514 226 40 32 chr15 34096179 34096303 -51599451 - L2 LINE L2 -2 3311 3187 207 0 0 0 chr15 34096378 34096401 -51599353 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1461 137 17 0 chr15 34096415 34096648 -51599106 + AluSq SINE Alu 72 308 -5 305 287 274 6 chr15 34096775 34096939 -51598815 - MIR SINE MIR -34 228 21 2020 137 0 0 chr15 34097499 34097791 -51597963 - AluSx SINE Alu -20 292 1 253 213 46 9 chr15 34099041 34099149 -51596605 + CT-rich Low_complexity Low_complexity 1 112 0 226 258 79 34 chr15 34099894 34099983 -51595771 - MIR3 SINE MIR -15 193 101 447 233 227 6 chr15 34100013 34100176 -51595578 - MIR SINE MIR 0 262 64 237 65 0 0 chr15 34100583 34100614 -51595140 + (CA)n Simple_repeat Simple_repeat 1 31 0 2306 70 3 3 chr15 34100620 34100921 -51594833 - AluY SINE Alu -10 301 1 273 139 0 0 chr15 34100934 34100977 -51594777 - tRNA-Cys-TGC tRNA tRNA -32 43 1 2073 100 28 0 chr15 34100986 34101276 -51594478 - AluY SINE Alu -13 298 1 290 344 187 8 chr15 34101297 34101538 -51594216 - L3 LINE CR1 -116 1461 1178 230 274 0 16 chr15 34101860 34101922 -51593832 + MIR3 SINE MIR 130 190 -18 1828 150 0 10 chr15 34103637 34103930 -51591824 - AluJb SINE Alu -17 295 6 1031 147 0 0 chr15 34103942 34104105 -51591649 - AluSg/x SINE Alu -13 297 135 522 258 116 21 chr15 34104125 34104424 -51591330 + HAL1 LINE L1 816 1150 -1357 189 74 0 0 chr15 34104424 34104451 -51591303 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 522 258 116 21 chr15 34104451 34104480 -51591274 + HAL1 LINE L1 1150 1175 -1332 1351 138 0 0 chr15 34104482 34104678 -51591076 + AluSx SINE Alu 1 196 -116 1226 267 140 32 chr15 34104708 34105323 -51590431 + HAL1 LINE L1 1237 1917 -590 17378 54 1 1 chr15 34105356 34105470 -51590284 + L1PA5 LINE L1 3123 3235 -2919 2017 117 3 0 chr15 34105470 34105753 -51590001 + AluSq SINE Alu 1 284 -29 846 94 0 0 chr15 34105647 34105754 -51590000 + AluSp/q SINE Alu 179 308 0 * 208 0 0 0 chr15 34105754 34105777 -51589977 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 17378 54 1 1 chr15 34105777 34108530 -51587224 + L1PA5 LINE L1 3234 6003 -151 1273 28 0 0 chr15 34108642 34108784 -51586970 + L1PA5 LINE L1 6002 6143 -11 234 0 0 0 chr15 34108791 34108817 -51586937 + (CAA)n Simple_repeat Simple_repeat 2 27 0 237 239 33 22 chr15 34108942 34109034 -51586720 + HAL1b LINE L1 746 838 -510 1770 153 0 0 chr15 34109152 34109407 -51586347 + AluSq SINE Alu 1 255 -58 324 115 0 0 chr15 34109507 34109559 -51586195 + AluSq SINE Alu 251 302 0 284 152 61 0 chr15 34109641 34109707 -51586047 + HAL1 LINE L1 2245 2314 -193 2189 128 3 0 chr15 34109713 34110017 -51585737 + AluSx SINE Alu 1 305 -7 2684 203 92 30 chr15 34110114 34110849 -51584905 - L1MC4a LINE L1 0 7808 7028 730 170 14 41 chr15 34110870 34111017 -51584737 - FRAM SINE Alu -11 165 23 1610 173 23 3 chr15 34111019 34111320 -51584434 - L1MD3 LINE L1 -932 7063 6757 336 48 0 0 chr15 34111321 34111363 -51584391 + (TATG)n Simple_repeat Simple_repeat 2 43 0 1350 228 131 3 chr15 34111366 34111748 -51584006 - L1MC4a LINE L1 -1203 6605 6175 1355 154 3 89 chr15 34111748 34112041 -51583713 - AluJb SINE Alu -17 295 28 1187 148 0 0 chr15 34112050 34112226 -51583528 - MLT1C LTR MaLR -291 176 1 228 136 23 0 chr15 34112236 34112280 -51583474 - L1MC4a LINE L1 -1797 6011 5967 960 168 18 0 chr15 34112286 34112453 -51583301 - MER6 DNA MER2_type 0 865 696 725 143 0 0 chr15 34112562 34112690 -51583064 + AluSp/q SINE Alu 188 315 0 2277 68 0 23 chr15 34112698 34113005 -51582749 - AluY SINE Alu -11 300 1 3672 167 49 13 chr15 34113009 34113087 -51582667 - MER6 DNA MER2_type -171 694 620 1730 154 28 21 chr15 34113087 34113372 -51582382 + AluJo SINE Alu 5 291 -21 3672 167 49 13 chr15 34113372 34113963 -51581791 - MER6 DNA MER2_type -245 620 1 442 200 32 16 chr15 34113963 34114088 -51581666 - L1MC4a LINE L1 -1850 5958 5832 1890 97 0 8 chr15 34114092 34114339 -51581415 - AluSp SINE Alu -12 301 57 1648 198 113 31 chr15 34114468 34114947 -51580807 - L1MC4a LINE L1 -1980 5828 5311 2045 168 67 7 chr15 34114951 34115357 -51580397 - L1MB8 LINE L1 -31 6147 5718 342 287 86 77 chr15 34115447 34115668 -51580086 - L1MC4a LINE L1 -1312 4834 4607 2341 106 3 0 chr15 34115668 34115980 -51579774 + AluSp SINE Alu 1 313 0 342 287 86 77 chr15 34115980 34116096 -51579658 - L1MC4a LINE L1 -1539 4607 4494 2267 71 7 0 chr15 34117613 34117940 -51577814 + AluY SINE Alu 1 329 0 180 363 117 24 chr15 34119850 34120098 -51575656 + L2 LINE L2 2538 2808 -506 743 177 0 57 chr15 34120471 34120612 -51575142 - FLAM_A SINE Alu 0 133 1 21 0 0 0 chr15 34121026 34121047 -51574707 + AT_rich Low_complexity Low_complexity 1 21 0 2182 107 3 26 chr15 34121202 34121510 -51574244 + AluSx SINE Alu 1 301 -11 236 139 0 0 chr15 34121641 34121684 -51574070 - L1P LINE L1 -758 5396 5354 4579 85 33 0 chr15 34121685 34122288 -51573466 - L1PA11 LINE L1 -1 6173 5551 1559 159 71 29 chr15 34122503 34122669 -51573085 + MER33 DNA MER1_type 3 161 -2424 2193 101 3 3 chr15 34122669 34122957 -51572797 - AluSq SINE Alu -22 291 4 1559 159 71 29 chr15 34122957 34123099 -51572655 + MER33 DNA MER1_type 161 324 0 585 124 0 0 chr15 34124632 34124721 -51571033 - AluSp/q SINE Alu -5 308 220 893 184 149 10 chr15 34124821 34125022 -51570732 + MLT1E2 LTR MaLR 398 626 0 306 283 268 0 chr15 34125082 34125220 -51570534 + MIR SINE MIR 74 248 -14 22 0 0 0 chr15 34127435 34127457 -51568297 + AT_rich Low_complexity Low_complexity 1 22 0 360 241 43 34 chr15 34127651 34127789 -51567965 - MIR SINE MIR -61 147 32 316 304 36 18 chr15 34128271 34128383 -51567371 + L2 LINE L2 3156 3269 -3 1380 165 0 28 chr15 34130408 34130657 -51565097 - AluJo SINE Alu -11 301 60 1867 147 0 4 chr15 34130657 34130929 -51564825 - AluSx SINE Alu -41 271 1 442 171 248 16 chr15 34131911 34132040 -51563714 - MER103 DNA DNA -2 164 6 2057 128 3 3 chr15 34132128 34132424 -51563330 - AluSx SINE Alu -16 296 1 2000 111 0 11 chr15 34133016 34133287 -51562467 + AluSx SINE Alu 21 288 -24 1183 149 11 5 chr15 34134131 34134319 -51561435 + AluJb SINE Alu 1 189 -123 207 0 0 0 chr15 34134694 34134717 -51561037 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 418 360 49 17 chr15 34134727 34135074 -51560680 + L2 LINE L2 1752 2109 -1205 413 306 106 73 chr15 34135327 34135767 -51559987 + L2 LINE L2 2560 3009 -263 378 0 0 0 chr15 34135952 34135994 -51559760 + (CA)n Simple_repeat Simple_repeat 2 43 0 1659 166 3 37 chr15 34135994 34136154 -51559600 - AluJo SINE Alu -26 286 139 2115 117 0 7 chr15 34136154 34136444 -51559310 - AluSx SINE Alu -20 292 5 1659 166 3 37 chr15 34136444 34136579 -51559175 - AluJo SINE Alu -173 139 1 2242 107 0 10 chr15 34136768 34137076 -51558678 + AluSx SINE Alu 1 305 -7 23 33 0 0 chr15 34137260 34137290 -51558464 + AT_rich Low_complexity Low_complexity 1 30 0 2131 125 0 13 chr15 34138635 34138948 -51556806 - AluJb SINE Alu -2 310 2 2297 109 3 0 chr15 34139316 34139620 -51556134 + AluSc SINE Alu 1 305 -4 387 0 0 0 chr15 34139620 34139663 -51556091 + (TA)n Simple_repeat Simple_repeat 1 43 0 335 285 72 53 chr15 34139723 34139930 -51555824 + L1MC4 LINE L1 7831 8041 -1 2342 142 46 24 chr15 34140497 34140552 -51555202 + L1MB3 LINE L1 5722 5774 -409 2177 120 7 0 chr15 34140552 34140852 -51554902 - AluSg SINE Alu -8 302 1 2342 142 46 24 chr15 34140852 34141212 -51554542 + L1MB3 LINE L1 5774 6146 -37 2254 54 43 0 chr15 34141213 34141491 -51554263 - AluY SINE Alu -21 290 1 1626 163 58 0 chr15 34142021 34142298 -51553456 - AluJo SINE Alu -19 293 1 2323 138 48 20 chr15 34142522 34142876 -51552878 + THE1B LTR MaLR 1 364 0 322 216 32 21 chr15 34142905 34143041 -51552713 - MIR SINE MIR -66 196 2 212 204 18 142 chr15 34143438 34143551 -51552203 - L2 LINE L2 -15 3298 3200 644 262 91 19 chr15 34144123 34144333 -51551421 + MIR SINE MIR 12 236 -26 1017 203 6 0 chr15 34144428 34144610 -51551144 - AluJo SINE Alu -12 300 118 231 165 134 41 chr15 34144782 34144879 -51550875 - L1MEd LINE L1 -5024 1095 990 835 274 85 0 chr15 34144907 34145130 -51550624 + MIR SINE MIR 10 251 -11 2276 99 26 3 chr15 34145404 34145707 -51550047 - AluSx SINE Alu -2 310 1 2203 116 0 10 chr15 34147285 34147587 -51548167 - AluSx SINE Alu 0 312 14 2042 120 0 0 chr15 34148792 34149068 -51546686 - AluSp SINE Alu -13 300 25 204 195 65 0 chr15 34149222 34149299 -51546455 + (TTTAA)n Simple_repeat Simple_repeat 1 82 0 25 0 0 0 chr15 34149311 34149336 -51546418 + AT_rich Low_complexity Low_complexity 1 25 0 2335 75 3 23 chr15 34149359 34149665 -51546089 - AluY SINE Alu -11 300 1 193 212 59 47 chr15 34149715 34149800 -51545954 + MIR SINE MIR 127 212 -50 373 268 84 78 chr15 34150608 34150787 -51544967 - LTR67 LTR ERVL -376 181 2 272 267 96 37 chr15 34150793 34150928 -51544826 + L1ME LINE L1 5762 5904 -280 278 125 0 0 chr15 34150952 34150992 -51544762 - LTR54 LTR ERV1 -68 442 403 2449 88 0 0 chr15 34151038 34151344 -51544410 - AluSp SINE Alu -7 306 1 2269 112 3 0 chr15 34151581 34151886 -51543868 + AluSq SINE Alu 1 306 -7 483 165 165 0 chr15 34152143 34152258 -51543496 - L1ME1 LINE L1 -105 6061 5928 306 0 0 0 chr15 34152258 34152292 -51543462 + (TA)n Simple_repeat Simple_repeat 2 35 0 222 62 0 0 chr15 34152303 34152335 -51543419 + (GA)n Simple_repeat Simple_repeat 1 32 0 2054 131 0 3 chr15 34152335 34152618 -51543136 - AluSx SINE Alu -30 282 1 255 260 63 39 chr15 34152892 34153019 -51542735 - MIR SINE MIR -37 225 96 286 31 0 0 chr15 34153020 34153052 -51542702 - U2 snRNA snRNA -150 38 7 294 338 26 2 chr15 34153058 34153154 -51542600 - MIR SINE MIR -101 107 10 1977 135 7 7 chr15 34153274 34153570 -51542184 + AluSq SINE Alu 1 296 -17 1012 97 35 14 chr15 34153570 34153714 -51542040 + AluSg/x SINE Alu 134 280 -32 1324 246 101 8 chr15 34153951 34154338 -51541416 + L1ME1 LINE L1 5739 6161 -5 217 333 20 29 chr15 34156072 34156174 -51539580 + L2 LINE L2 2584 2684 -630 184 336 49 35 chr15 34156276 34156419 -51539335 + L2 LINE L2 2825 2969 -303 457 248 79 82 chr15 34156444 34156737 -51539017 + L1ME4a LINE L1 5658 5957 -164 2082 138 20 0 chr15 34156886 34157190 -51538564 - AluSx SINE Alu -2 310 1 22 0 0 0 chr15 34157250 34157272 -51538482 + AT_rich Low_complexity Low_complexity 1 22 0 1154 165 5 28 chr15 34157295 34157519 -51538235 + AluJo SINE Alu 87 294 -18 377 281 26 39 chr15 34157640 34157793 -51537961 - L1MC4a LINE L1 -1882 5926 5776 1977 139 13 13 chr15 34157872 34158174 -51537580 - AluSx SINE Alu -10 302 1 727 250 61 5 chr15 34158356 34158568 -51537186 - MER58A DNA MER1_type 0 224 1 506 244 0 53 chr15 34158568 34158699 -51537055 + L2 LINE L2 3189 3312 -1 1927 128 14 11 chr15 34158979 34159288 -51536466 + AluSx SINE Alu 1 310 0 334 172 17 0 chr15 34159307 34159365 -51536389 + MER90 LTR ERV1 1 59 -516 * 2167 169 90 0 chr15 34159364 34159766 -51535988 + MER90 LTR ERV1 177 614 0 302 258 34 11 chr15 34160568 34160657 -51535097 + L2 LINE L2 3223 3313 0 1755 109 11 0 chr15 34160985 34161259 -51534495 + L1MA2 LINE L1 6028 6304 0 21 0 0 0 chr15 34161358 34161379 -51534375 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr15 34162078 34162113 -51533641 + AT_rich Low_complexity Low_complexity 1 35 0 707 123 39 32 chr15 34162996 34163150 -51532604 + L1MA7 LINE L1 6137 6291 0 465 322 54 24 chr15 34163794 34163967 -51531787 + L1M4 LINE L1 4456 4622 -1524 2325 95 3 3 chr15 34163967 34164271 -51531483 + AluSp SINE Alu 1 304 -9 465 322 54 24 chr15 34164271 34164467 -51531287 + L1M4 LINE L1 4622 4836 -1310 2356 102 0 0 chr15 34164483 34164786 -51530968 + AluSx SINE Alu 1 303 -9 305 324 50 41 chr15 34164853 34165072 -51530682 + L1M4 LINE L1 4924 5144 -1002 247 242 16 81 chr15 34165496 34165520 -51530234 + CT-rich Low_complexity Low_complexity 3 27 -149 1587 165 69 0 chr15 34165520 34165781 -51529973 - AluJo SINE Alu -33 279 1 247 242 16 81 chr15 34165781 34165942 -51529812 + CT-rich Low_complexity Low_complexity 27 176 0 2112 137 0 0 chr15 34167341 34167640 -51528114 + AluSx SINE Alu 1 299 -13 2401 131 8 14 chr15 34167940 34168306 -51527448 + THE1B LTR MaLR 1 364 0 348 309 86 37 chr15 34168393 34168555 -51527199 - MIR3 SINE MIR -9 199 30 21 82 0 0 chr15 34169092 34169141 -51526613 + AT_rich Low_complexity Low_complexity 1 49 0 291 28 0 0 chr15 34169426 34169462 -51526292 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 1819 167 0 3 chr15 34170091 34170379 -51525375 - AluJb SINE Alu -2 310 24 235 196 36 0 chr15 34171768 34171824 -51523930 + L1ME4a LINE L1 6059 6116 -5 225 0 0 0 chr15 34171842 34171867 -51523887 + (TAA)n Simple_repeat Simple_repeat 2 26 0 23 54 0 0 chr15 34171940 34171977 -51523777 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr15 34173451 34173491 -51522263 + AT_rich Low_complexity Low_complexity 1 40 0 1994 257 75 52 chr15 34173731 34174261 -51521493 + L1MD3 LINE L1 11 527 -5734 2150 126 3 0 chr15 34174261 34174562 -51521192 + AluSx SINE Alu 3 304 -8 1994 257 75 52 chr15 34174562 34174869 -51520885 + L1MD3 LINE L1 527 825 -5436 1930 134 0 28 chr15 34174869 34175185 -51520569 - AluSx SINE Alu 0 308 1 1994 257 75 52 chr15 34175185 34176113 -51519641 + L1MD3 LINE L1 825 1875 -4386 352 272 89 0 chr15 34176145 34176374 -51519380 + L1MD3 LINE L1 1921 2176 -3904 23 54 0 0 chr15 34176387 34176424 -51519330 + AT_rich Low_complexity Low_complexity 1 37 0 806 163 0 15 chr15 34176437 34176572 -51519182 - FLAM_C SINE Alu 0 133 1 4424 206 70 24 chr15 34176575 34177667 -51518087 - L1MC4a LINE L1 0 7808 6667 509 263 67 0 chr15 34177676 34177855 -51517899 + L1MD3 LINE L1 2168 2358 -3722 * 1075 227 100 19 chr15 34177840 34178379 -51517375 + L1MD3 LINE L1 5182 5411 -685 2100 128 3 6 chr15 34178379 34178691 -51517063 - AluSq SINE Alu -2 311 1 1075 227 100 19 chr15 34178691 34178755 -51516999 + L1MD3 LINE L1 5411 5468 -628 1652 295 119 26 chr15 34178775 34179575 -51516179 + HAL1 LINE L1 489 1412 -1095 2110 125 0 13 chr15 34179575 34179878 -51515876 + AluSg SINE Alu 1 299 -11 1652 295 119 26 chr15 34179878 34180137 -51515617 + HAL1 LINE L1 1412 1646 -861 743 239 115 0 chr15 34180143 34180352 -51515402 + HAL1 LINE L1 1683 1915 -592 338 289 79 0 chr15 34180353 34180467 -51515287 + MIR SINE MIR 139 261 -1 2297 106 3 0 chr15 34180697 34181008 -51514746 - AluSq SINE Alu -1 312 1 180 0 0 0 chr15 34181202 34181222 -51514532 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 1155 183 18 18 chr15 34181369 34181588 -51514166 - MER20 DNA MER1_type 0 219 1 21607 149 44 17 chr15 34181675 34183246 -51512508 + L1MA3 LINE L1 16 1542 -6023 408 20 0 0 chr15 34183246 34183295 -51512459 + (CA)n Simple_repeat Simple_repeat 2 50 0 21607 149 44 17 chr15 34183295 34183447 -51512307 + L1MA3 LINE L1 1542 1688 -5877 2297 114 0 0 chr15 34183447 34183745 -51512009 - AluSx SINE Alu -12 300 3 21607 149 44 17 chr15 34183745 34186052 -51509702 + L1MA3 LINE L1 1688 3930 -3635 2127 79 28 7 chr15 34186052 34186342 -51509412 + AluSc SINE Alu 1 296 -13 21607 149 44 17 chr15 34186342 34188751 -51507003 + L1MA3 LINE L1 3930 6645 -920 4252 97 36 33 chr15 34188751 34189255 -51506499 + L1MA3 LINE L1 7021 7536 -188 1964 136 0 7 chr15 34189255 34189565 -51506189 - AluSx SINE Alu 0 313 6 4252 97 36 33 chr15 34189565 34189755 -51505999 + L1MA3 LINE L1 7536 7724 0 2883 166 75 9 chr15 34189762 34190488 -51505266 - L1MB8 LINE L1 -9 6169 5373 1942 127 3 3 chr15 34191551 34191897 -51503857 + AluSq SINE Alu 1 346 0 22 35 0 0 chr15 34192138 34192167 -51503587 + AT_rich Low_complexity Low_complexity 1 29 0 347 324 29 12 chr15 34192314 34192484 -51503270 - L1MC4a LINE L1 -1911 5897 5725 225 253 67 0 chr15 34192499 34192574 -51503180 - L1MC4a LINE L1 -2064 5744 5665 1099 171 35 5 chr15 34193841 34194040 -51501714 - MER2 DNA MER2_type -135 210 6 652 267 81 0 chr15 34195138 34195299 -51500455 - MER5A DNA MER1_type -12 177 4 369 280 84 0 chr15 34195384 34195527 -51500227 + MER103 DNA DNA 8 162 -4 1880 156 3 7 chr15 34195748 34196050 -51499704 - AluSx SINE Alu -11 301 1 42 71 0 0 chr15 34196453 34196537 -51499217 + AT_rich Low_complexity Low_complexity 1 84 0 2364 62 3 3 chr15 34196552 34196840 -51498914 - AluY SINE Alu -23 288 1 1793 136 23 36 chr15 34198199 34198508 -51497246 - AluJo SINE Alu -7 305 1 1075 190 5 5 chr15 34199287 34199492 -51496262 + MER3 DNA MER1_type 2 206 -3 929 97 8 0 chr15 34200630 34200764 -51494990 - L1MA2 LINE L1 0 6304 6170 29 0 0 0 chr15 34201475 34201504 -51494250 + AT_rich Low_complexity Low_complexity 1 29 0 289 219 106 32 chr15 34202076 34202199 -51493555 + L1MC5 LINE L1 7782 7913 -48 1010 158 0 0 chr15 34202416 34202594 -51493160 + AluSg/x SINE Alu 131 308 0 269 303 58 10 chr15 34202906 34203030 -51492724 + MIR SINE MIR 43 173 -62 2488 57 0 3 chr15 34203110 34203408 -51492346 + AluY SINE Alu 1 297 -14 207 0 0 0 chr15 34203413 34203436 -51492318 + (TA)n Simple_repeat Simple_repeat 1 23 0 1905 120 20 10 chr15 34203444 34203736 -51492018 + AluSq SINE Alu 1 295 -18 2117 135 0 0 chr15 34203866 34204169 -51491585 - AluSx SINE Alu -8 304 2 2308 87 7 0 chr15 34204391 34204689 -51491065 + AluSp SINE Alu 13 312 -1 382 230 184 70 chr15 34204871 34205258 -51490496 + HAL1 LINE L1 647 1077 -1430 2052 38 15 0 chr15 34205259 34205521 -51490233 - L1PA5 LINE L1 -807 5339 5074 7156 30 0 0 chr15 34205521 34206360 -51489394 + L1PA5 LINE L1 5312 6152 -2 26 23 0 23 chr15 34206360 34206381 -51489373 + AT_rich Low_complexity Low_complexity 1 21 -22 2122 124 10 0 chr15 34206381 34206688 -51489066 + AluSx SINE Alu 1 310 -2 26 23 0 23 chr15 34206688 34206710 -51489044 + AT_rich Low_complexity Low_complexity 21 43 0 525 238 56 12 chr15 34206726 34206886 -51488868 + HAL1 LINE L1 1127 1293 -1214 254 309 0 0 chr15 34207748 34207816 -51487938 - L2 LINE L2 0 3313 3246 466 248 161 25 chr15 34208101 34208262 -51487492 + MER5A DNA MER1_type 7 189 0 636 217 25 0 chr15 34208328 34208448 -51487306 + FLAM_A SINE Alu 1 123 -10 305 313 139 43 chr15 34209804 34210414 -51485340 + L2 LINE L2 1793 2461 -853 429 307 85 112 chr15 34210588 34210700 -51485054 + L2 LINE L2 2838 2951 -321 1198 156 38 5 chr15 34210700 34210912 -51484842 + MER20 DNA MER1_type 1 219 0 429 307 85 112 chr15 34210912 34211102 -51484652 + L2 LINE L2 2951 3127 -145 2493 34 3 0 chr15 34211102 34211395 -51484359 - AluY SINE Alu -17 294 1 429 307 85 112 chr15 34211395 34211537 -51484217 + L2 LINE L2 3127 3271 -1 21 89 0 0 chr15 34212009 34212065 -51483689 + AT_rich Low_complexity Low_complexity 1 56 0 1558 182 23 0 chr15 34219433 34219735 -51476019 + MLT2C2 LTR ERVL 1 309 -155 219 200 47 12 chr15 34219736 34219821 -51475933 + (TA)n Simple_repeat Simple_repeat 1 88 0 306 122 0 0 chr15 34219826 34219875 -51475879 + MLT2C2 LTR ERVL 366 414 0 373 243 40 81 chr15 34220681 34220829 -51474925 - MIR SINE MIR -46 216 75 1864 114 0 88 chr15 34220893 34221201 -51474553 - AluSx SINE Alu -13 299 19 258 320 83 0 chr15 34221622 34221778 -51473976 + L1ME3A LINE L1 5616 5784 -378 2024 155 0 0 chr15 34221933 34222230 -51473524 - AluSq SINE Alu -16 297 1 314 289 89 61 chr15 34222300 34222480 -51473274 + L1ME3A LINE L1 5963 6147 -23 1562 122 9 0 chr15 34222549 34222778 -51472976 + AluSg/x SINE Alu 79 309 -1 2058 129 0 3 chr15 34222933 34223228 -51472526 + AluSc SINE Alu 1 294 -15 2201 131 0 0 chr15 34224353 34224665 -51471089 + AluSx SINE Alu 1 312 0 294 117 44 73 chr15 34225543 34225680 -51470074 + (CATATA)n Simple_repeat Simple_repeat 4 136 0 1658 173 14 0 chr15 34226055 34226333 -51469421 + AluJb SINE Alu 1 282 -30 2149 129 0 7 chr15 34226365 34226675 -51469079 + AluSx SINE Alu 5 312 0 1449 161 66 8 chr15 34226883 34227126 -51468628 - AluJb SINE Alu -17 295 39 2051 102 0 7 chr15 34227604 34227879 -51467875 - AluSx SINE Alu -39 273 1 234 314 85 60 chr15 34227887 34228275 -51467479 + L2 LINE L2 2659 3059 -213 22 35 0 0 chr15 34228476 34228505 -51467249 + AT_rich Low_complexity Low_complexity 1 29 0 1489 165 11 11 chr15 34228892 34229171 -51466583 - L1PA15 LINE L1 0 6165 5887 22 0 0 0 chr15 34229181 34229203 -51466551 + AT_rich Low_complexity Low_complexity 1 22 0 369 272 64 8 chr15 34229372 34229607 -51466147 + HAL1 LINE L1 945 1192 -1315 230 136 45 0 chr15 34229613 34229657 -51466097 + MER105 DNA DNA 6 51 -153 369 240 0 52 chr15 34229669 34229765 -51465989 + MER58 DNA MER1_type 9 99 -242 470 186 10 0 chr15 34229779 34229876 -51465878 + MER58 DNA MER1_type 2320 2417 -3 661 182 34 0 chr15 34229878 34230026 -51465728 + MER105 DNA DNA 45 197 -7 366 289 104 44 chr15 34230030 34230176 -51465578 + HAL1 LINE L1 1198 1334 -1173 2248 141 25 0 chr15 34230176 34230531 -51465223 + THE1B LTR MaLR 1 364 0 366 289 104 44 chr15 34230531 34230768 -51464986 + HAL1 LINE L1 1334 1604 -903 1565 148 32 0 chr15 34231314 34231597 -51464157 - L1MB8 LINE L1 -6 6172 5881 2197 107 0 40 chr15 34231597 34231765 -51463989 + THE1C LTR MaLR 2 150 -225 7106 43 3 20 chr15 34231765 34233260 -51462494 + L1PA5 LINE L1 4670 6149 -5 2197 107 0 40 chr15 34233260 34233438 -51462316 + THE1C LTR MaLR 150 334 -41 2200 101 3 0 chr15 34233439 34233725 -51462029 + AluSq SINE Alu 1 287 -26 335 130 19 0 chr15 34233750 34233804 -51461950 + THE1C LTR MaLR 321 375 0 1121 132 56 0 chr15 34233804 34234017 -51461737 - L1MB8 LINE L1 -298 5886 5662 42 0 0 0 chr15 34234343 34234385 -51461369 + AT_rich Low_complexity Low_complexity 1 42 0 397 225 88 88 chr15 34234389 34234428 -51461326 - L1MC4a LINE L1 -1880 5928 5890 2289 121 3 0 chr15 34234428 34234735 -51461019 - AluSx SINE Alu -4 308 1 397 225 88 88 chr15 34234735 34234877 -51460877 - L1MC4a LINE L1 -1917 5891 5747 588 285 72 13 chr15 34234883 34235118 -51460636 + MLT1L LTR MaLR 39 287 -328 2339 103 0 3 chr15 34235133 34235433 -51460321 + AluSc SINE Alu 1 299 -10 238 302 170 19 chr15 34235809 34235915 -51459839 + L2 LINE L2 3116 3237 -35 2148 144 0 0 chr15 34236354 34236660 -51459094 - AluSq SINE Alu -7 306 1 2930 193 40 30 chr15 34237239 34237646 -51458108 + L1MB1 LINE L1 4490 4891 -1255 1995 131 26 26 chr15 34237646 34237951 -51457803 + AluSc SINE Alu 1 305 -4 2930 193 40 30 chr15 34237951 34238351 -51457403 + L1MB1 LINE L1 4891 5305 -841 1517 201 23 23 chr15 34238393 34238702 -51457052 + AluJb SINE Alu 3 311 -1 1761 168 70 22 chr15 34238716 34239074 -51456680 + THE1C LTR MaLR 1 375 0 2909 174 43 60 chr15 34239074 34239991 -51455763 + L1MB1 LINE L1 5297 6176 -2 366 161 32 0 chr15 34240048 34240141 -51455613 + CT-rich Low_complexity Low_complexity 2 97 0 822 230 62 44 chr15 34240163 34240389 -51455365 - AluJo SINE Alu -82 230 1 33 25 0 0 chr15 34240457 34240497 -51455257 + AT_rich Low_complexity Low_complexity 1 40 0 2309 243 98 20 chr15 34240560 34241131 -51454623 - L1M4 LINE L1 -2739 3407 2882 2038 136 3 29 chr15 34241131 34241440 -51454314 - AluSx SINE Alu -11 301 1 2309 243 98 20 chr15 34241440 34241901 -51453853 - L1M4 LINE L1 -3264 2882 2295 1921 170 120 8 chr15 34241904 34242287 -51453467 + MSTA LTR MaLR 3 428 0 6277 198 42 6 chr15 34242287 34243588 -51452166 + MSTA-int LTR MaLR 1 1348 -303 22649 106 8 13 chr15 34243589 34247154 -51448600 + L1PA5 LINE L1 13 3560 -2586 13075 41 5 0 chr15 34247154 34249530 -51446224 + L1PA5 LINE L1 3774 6153 -1 713 301 178 6 chr15 34250040 34250382 -51445372 - L2 LINE L2 -1279 2035 1635 201 74 0 0 chr15 34251162 34251189 -51444565 + (A)n Simple_repeat Simple_repeat 1 27 0 2244 80 0 21 chr15 34251614 34251930 -51443824 + AluY SINE Alu 1 310 0 482 222 203 57 chr15 34252479 34252551 -51443203 - MIR SINE MIR 0 262 202 2244 105 3 0 chr15 34252551 34252856 -51442898 - AluSx SINE Alu -6 306 1 482 222 203 57 chr15 34252856 34252995 -51442759 - MIR SINE MIR -60 202 20 2288 122 0 0 chr15 34252997 34253309 -51442445 - AluSx SINE Alu 0 312 1 1782 86 0 4 chr15 34253316 34253548 -51442206 - AluSc SINE Alu -39 270 40 254 352 86 32 chr15 34253579 34253985 -51441769 + L2 LINE L2 1798 2225 -1089 2233 116 3 0 chr15 34254098 34254391 -51441363 - AluSp SINE Alu -19 294 1 1476 132 40 158 chr15 34254499 34254543 -51441211 - L1MB1 LINE L1 0 6168 6120 357 82 0 0 chr15 34254543 34254592 -51441162 + (CACTG)n Simple_repeat Simple_repeat 4 52 0 1711 162 0 30 chr15 34254600 34254896 -51440858 - AluJb SINE Alu -24 288 2 1476 132 40 158 chr15 34254896 34255268 -51440486 - L1MB1 LINE L1 -55 6113 5699 522 221 0 0 chr15 34255268 34255372 -51440382 - U13 snRNA snRNA 0 104 1 2047 134 20 13 chr15 34255382 34255681 -51440073 - AluJb SINE Alu -11 301 1 1476 132 40 158 chr15 34255681 34255700 -51440054 - L1MB1 LINE L1 -479 5689 5772 407 18 0 0 chr15 34255700 34255755 -51439999 - L1MA3 LINE L1 0 6305 6251 1476 132 40 158 chr15 34255755 34255797 -51439957 - L1MB1 LINE L1 -395 5773 5728 * 3782 238 55 40 chr15 34255792 34257123 -51438631 - L1M4 LINE L1 -901 5245 3890 4705 44 5 0 chr15 34257123 34257694 -51438060 + L1PA6 LINE L1 5576 6149 -5 3782 238 55 40 chr15 34257694 34257771 -51437983 - L1M4 LINE L1 -2256 3890 3816 3161 240 63 41 chr15 34257761 34259033 -51436721 - L1M4 LINE L1 -2165 3915 2616 * 1546 235 135 5 chr15 34259059 34259459 -51436295 + MLT1E LTR MaLR 1 452 -141 1744 156 3 3 chr15 34259459 34259738 -51436016 - MER54A LTR ERVL 0 901 623 2241 143 42 29 chr15 34259738 34260275 -51435479 + MLT2A2 LTR ERVL 1 546 -8 3558 163 36 16 chr15 34260280 34260895 -51434859 - MER54A LTR ERVL -272 629 3 748 148 19 77 chr15 34260920 34261033 -51434721 + MLT1E LTR MaLR 448 552 -41 2197 85 4 0 chr15 34261033 34261336 -51434418 - AluY SINE Alu 0 304 1 748 148 19 77 chr15 34261336 34261376 -51434378 + MLT1E LTR MaLR 552 593 0 1685 265 77 61 chr15 34261383 34262011 -51433743 - L1MEc LINE L1 -3418 2662 2045 2245 123 0 0 chr15 34262011 34262311 -51433443 - AluSq SINE Alu -13 300 1 1685 265 77 61 chr15 34262311 34262351 -51433403 - L1MEc LINE L1 -4035 2045 2007 2065 123 23 0 chr15 34262351 34262652 -51433102 - AluSx SINE Alu -4 308 1 1685 265 77 61 chr15 34262652 34262696 -51433058 - L1MEc LINE L1 -4073 2007 1965 1502 166 0 0 chr15 34262696 34262937 -51432817 - AluJb SINE Alu -9 303 63 1685 265 77 61 chr15 34262937 34263856 -51431898 - L1MEc LINE L1 -4115 1965 1062 198 0 0 0 chr15 34263856 34263878 -51431876 + (TTG)n Simple_repeat Simple_repeat 2 23 0 1685 265 77 61 chr15 34263878 34264218 -51431536 - L1MEc LINE L1 -5018 1062 729 457 75 12 12 chr15 34264218 34264298 -51431456 + (TG)n Simple_repeat Simple_repeat 2 81 0 1685 265 77 61 chr15 34264298 34264310 -51431444 - L1MEc LINE L1 -5351 729 719 1826 184 83 32 chr15 34264310 34264718 -51431036 + MSTB1 LTR MaLR 3 431 -1 1685 265 77 61 chr15 34264718 34264764 -51430990 - L1MEc LINE L1 -5361 719 675 1514 172 4 15 chr15 34264764 34265032 -51430722 - AluJb SINE Alu -10 302 38 1685 265 77 61 chr15 34265032 34265094 -51430660 - L1MEc LINE L1 -5405 675 444 429 54 0 0 chr15 34265221 34265277 -51430477 + (TATG)n Simple_repeat Simple_repeat 2 57 0 772 111 0 0 chr15 34265277 34265376 -51430378 - AluSx SINE Alu -20 292 194 1060 113 0 7 chr15 34265377 34265519 -51430235 - AluSx SINE Alu -172 141 1 876 235 34 0 chr15 34265605 34265809 -51429945 - L1MEc LINE L1 -5853 217 7 31 92 0 0 chr15 34266170 34266257 -51429497 + AT_rich Low_complexity Low_complexity 1 87 0 2107 118 10 3 chr15 34266464 34266753 -51429001 - AluSx SINE Alu -21 291 1 493 263 44 67 chr15 34266843 34267008 -51428746 + L1MC4 LINE L1 7753 7909 -133 384 22 0 0 chr15 34267008 34267053 -51428701 + (TG)n Simple_repeat Simple_repeat 2 46 0 493 263 44 67 chr15 34267053 34267184 -51428570 + L1MC4 LINE L1 7909 8042 0 22 56 0 0 chr15 34267190 34267226 -51428528 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr15 34267252 34267281 -51428473 + AT_rich Low_complexity Low_complexity 1 29 0 1400 191 70 0 chr15 34267319 34267576 -51428178 + AluJo SINE Alu 14 288 -24 389 279 78 6 chr15 34267578 34267757 -51427997 + L1ME LINE L1 4462 4653 -1493 390 290 92 25 chr15 34268219 34268430 -51427324 + L1ME LINE L1 5514 5714 -456 * 20658 167 35 19 chr15 34268427 34270910 -51424844 + L1M1 LINE L1 12 2452 -5244 2220 118 0 0 chr15 34270910 34271206 -51424548 + AluSx SINE Alu 1 296 -16 20658 167 35 19 chr15 34271206 34271441 -51424313 + L1M1 LINE L1 2452 2682 -5014 216 0 0 0 chr15 34271441 34271465 -51424289 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 20658 167 35 19 chr15 34271465 34272824 -51422930 + L1M1 LINE L1 2682 4017 -3679 1301 185 43 46 chr15 34272824 34273127 -51422627 + AluJo SINE Alu 1 302 -10 20658 167 35 19 chr15 34273127 34274450 -51421304 + L1M1 LINE L1 4017 5316 -2380 2383 100 7 0 chr15 34274450 34274760 -51420994 - AluSx SINE Alu 0 312 1 20658 167 35 19 chr15 34274760 34276182 -51419572 + L1M1 LINE L1 5316 6953 -743 2249 85 3 16 chr15 34276195 34276500 -51419254 - AluY SINE Alu -10 301 1 2029 141 64 0 chr15 34276733 34277059 -51418695 + MER7A DNA MER2_type 2 346 0 418 192 15 92 chr15 34277120 34277250 -51418504 + L1MEd LINE L1 151 270 -5935 23 54 0 0 chr15 34277289 34277326 -51418428 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr15 34278625 34278649 -51417105 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr15 34278757 34278801 -51416953 + AT_rich Low_complexity Low_complexity 1 44 0 2943 3 0 0 chr15 34278907 34279219 -51416535 - AluYb8 SINE Alu -5 313 2 1816 98 35 105 chr15 34279485 34279800 -51415954 - AluSx SINE Alu -19 293 1 317 280 124 42 chr15 34279916 34280109 -51415645 + HAL1 LINE L1 586 794 -1713 * 624 294 5 5 chr15 34280106 34280300 -51415454 + HAL1 LINE L1 1700 1893 -614 237 83 0 0 chr15 34280347 34280383 -51415371 + (TG)n Simple_repeat Simple_repeat 2 37 0 2136 88 0 82 chr15 34280601 34280932 -51414822 - AluSx SINE Alu -8 304 1 738 208 113 0 chr15 34281236 34281404 -51414350 + MER5A DNA MER1_type 1 187 -2 2776 188 97 21 chr15 34281676 34282294 -51413460 + L1ME2 LINE L1 5481 6145 -19 294 269 12 54 chr15 34282313 34282407 -51413347 + L1MEd LINE L1 1623 1709 -4687 2384 81 0 7 chr15 34282407 34282703 -51413051 + AluSq SINE Alu 1 294 -19 294 269 12 54 chr15 34282703 34282775 -51412979 + L1MEd LINE L1 1709 1782 -4614 207 139 56 0 chr15 34282853 34282889 -51412865 + (CGTG)n Simple_repeat Simple_repeat 2 39 0 185 381 52 19 chr15 34282893 34283048 -51412706 + L2 LINE L2 2752 2911 -403 22 0 0 0 chr15 34283152 34283174 -51412580 + AT_rich Low_complexity Low_complexity 1 22 0 2152 135 3 0 chr15 34283181 34283478 -51412276 - AluSx SINE Alu -14 298 1 211 333 162 8 chr15 34283553 34283670 -51412084 + L2 LINE L2 3134 3268 -4 340 275 72 29 chr15 34283924 34284062 -51411692 + MIR SINE MIR 119 262 0 193 173 39 77 chr15 34284703 34284755 -51410999 + MIR3 SINE MIR 155 204 -4 3394 233 107 29 chr15 34285116 34285322 -51410432 + L1MC4 LINE L1 6463 6652 -1390 285 29 0 0 chr15 34285322 34285356 -51410398 + (CA)n Simple_repeat Simple_repeat 2 35 0 3394 233 107 29 chr15 34285356 34286148 -51409606 + L1MC4 LINE L1 6652 7548 -494 2494 70 0 19 chr15 34286148 34286462 -51409292 - AluY SINE Alu -3 308 1 3394 233 107 29 chr15 34286462 34286502 -51409252 + L1MC4 LINE L1 7548 7583 -459 6867 15 0 0 chr15 34286502 34287587 -51408167 - L1P1 LINE L1 -464 5691 4607 4218 19 2 0 chr15 34287577 34288054 -51407700 + L1HS LINE L1 5677 6154 -1 * 282 287 13 13 chr15 34288066 34288522 -51407232 + L1MD3 LINE L1 7578 8019 -19 2194 101 0 0 chr15 34288522 34288808 -51406946 + AluSx SINE Alu 1 286 -26 282 287 13 13 chr15 34288808 34288828 -51406926 + L1MD3 LINE L1 8019 8038 0 324 283 62 0 chr15 34289249 34289362 -51406392 - LTR67 LTR ERVL -4 553 434 3233 127 6 30 chr15 34289387 34289890 -51405864 + MER1A DNA MER1_type 37 527 -2 452 260 0 0 chr15 34290998 34291094 -51404660 + L2 LINE L2 3175 3270 -2 266 138 17 0 chr15 34293181 34293239 -51402515 + GA-rich Low_complexity Low_complexity 1 59 0 241 200 25 58 chr15 34293331 34293451 -51402303 + (CGGGG)n Simple_repeat Simple_repeat 4 119 0 2003 120 3 3 chr15 34294341 34294625 -51401129 + AluSx SINE Alu 1 284 -28 568 321 29 29 chr15 34296402 34296648 -51399106 - MLT1J LTR MaLR -40 471 226 2074 222 113 9 chr15 34296821 34297014 -51398740 + L1MC4 LINE L1 6463 6635 -1407 339 25 0 0 chr15 34297014 34297054 -51398700 + (CA)n Simple_repeat Simple_repeat 1 40 0 2074 222 113 9 chr15 34297054 34297428 -51398326 + L1MC4 LINE L1 6635 7089 -953 754 219 306 0 chr15 34297430 34297727 -51398027 + L1MC4 LINE L1 7240 7627 -415 358 118 118 59 chr15 34297730 34297815 -51397939 - MLT2B1 LTR ERVL 0 520 431 1737 154 0 4 chr15 34297822 34298081 -51397673 - AluSx SINE Alu -52 260 3 266 310 152 15 chr15 34298302 34298499 -51397255 + L2 LINE L2 2241 2464 -850 290 333 56 77 chr15 34298698 34298748 -51397006 - LTR16C LTR ERVL -32 459 409 943 229 50 5 chr15 34298748 34298949 -51396805 - MER63A DNA MER1_type 0 210 1 290 333 56 77 chr15 34298949 34299183 -51396571 - LTR16C LTR ERVL -82 409 181 896 291 67 46 chr15 34299533 34300014 -51395740 - ERVL LTR ERVL -399 5365 4875 881 143 0 0 chr15 34300591 34300717 -51395037 - AluSg/x SINE Alu -16 294 169 667 116 11 0 chr15 34301362 34301457 -51394297 + MSTD LTR MaLR 1 96 -300 1283 156 18 53 chr15 34301459 34301684 -51394070 + AluJo SINE Alu 1 217 -95 264 130 74 19 chr15 34301684 34301738 -51394016 + MSTB2 LTR MaLR 390 446 -11 1922 118 8 0 chr15 34301777 34302039 -51393715 + AluSx SINE Alu 3 266 -46 1307 90 6 6 chr15 34302039 34302206 -51393548 - AluSc SINE Alu -142 167 1 2829 3 0 0 chr15 34302545 34302845 -51392909 - AluYa5 SINE Alu -11 300 1 27 0 0 0 chr15 34302850 34302877 -51392877 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr15 34303687 34303721 -51392033 + AT_rich Low_complexity Low_complexity 1 34 0 185 94 31 0 chr15 34306764 34306796 -51388958 + (CGG)n Simple_repeat Simple_repeat 2 34 0 254 182 0 0 chr15 34306796 34306851 -51388903 + (CTG)n Simple_repeat Simple_repeat 2 56 0 585 110 0 0 chr15 34306851 34306960 -51388794 + (CGG)n Simple_repeat Simple_repeat 3 111 0 2265 92 0 3 chr15 34307324 34307606 -51388148 + AluSg SINE Alu 11 291 -19 2025 136 3 7 chr15 34307885 34308187 -51387567 - AluSx SINE Alu -8 304 4 1129 230 75 0 chr15 34308205 34308483 -51387271 - L1ME3A LINE L1 -13 6157 5859 2597 163 36 13 chr15 34308487 34308934 -51386820 - LTR32 LTR ERVL 0 471 15 1784 215 75 24 chr15 34308941 34309476 -51386278 - L1ME3A LINE L1 -317 5849 5275 1856 147 60 0 chr15 34309505 34309790 -51385964 + AluJb SINE Alu 3 304 -8 2490 91 6 3 chr15 34310053 34310382 -51385372 + THE1C LTR MaLR 1 330 -45 2298 85 7 0 chr15 34310382 34310675 -51385079 + AluSq SINE Alu 1 295 -18 1828 72 0 5 chr15 34310692 34310915 -51384839 - AluSc SINE Alu -87 222 1 27 0 0 0 chr15 34310925 34310952 -51384802 + AT_rich Low_complexity Low_complexity 1 27 0 2517 58 0 13 chr15 34311536 34311844 -51383910 + AluY SINE Alu 1 304 -7 1716 182 17 10 chr15 34312233 34312530 -51383224 + AluJb SINE Alu 1 299 -13 2939 159 116 16 chr15 34312617 34313177 -51382577 - LTR26E LTR ERV1 -2 620 5 2932 73 3 11 chr15 34313177 34313534 -51382220 - THE1A LTR MaLR 0 355 1 12818 77 6 6 chr15 34313534 34315114 -51380640 - THE1A-int LTR MaLR 0 1580 1 2890 82 3 3 chr15 34315114 34315469 -51380285 - THE1A LTR MaLR 0 355 1 2471 161 157 75 chr15 34315684 34316355 -51379399 - LTR8A LTR ERV1 -1 726 1 633 282 71 34 chr15 34316530 34316796 -51378958 - MLT1L LTR MaLR -339 276 1 467 345 80 4 chr15 34316823 34317049 -51378705 + L2 LINE L2 2841 3083 -189 3004 179 34 20 chr15 34317083 34317640 -51378114 + MER82 DNA MER2_type 1 565 -88 1208 227 126 64 chr15 34317640 34317962 -51377792 + LTR48 LTR ERV1 1 302 -342 1574 175 13 20 chr15 34317962 34318265 -51377489 - AluJb SINE Alu -11 301 1 1208 227 126 64 chr15 34318265 34318584 -51377170 + LTR48 LTR ERV1 302 629 -15 422 213 0 0 chr15 34318606 34318681 -51377073 + MER82 DNA MER2_type 570 644 -9 2122 181 84 73 chr15 34318681 34319229 -51376525 + MLT2B3 LTR ERVL 1 554 0 10465 183 40 17 chr15 34319720 34321177 -51374577 - L1PA16 LINE L1 -135 6031 4608 1868 135 85 0 chr15 34321177 34321458 -51374296 - AluSx SINE Alu -5 307 3 10465 183 40 17 chr15 34321458 34322801 -51372953 - L1PA16 LINE L1 -1558 4608 3136 1966 136 0 30 chr15 34322801 34323096 -51372658 - AluSx SINE Alu -17 295 10 10465 183 40 17 chr15 34323096 34323500 -51372254 - L1PA16 LINE L1 -3030 3136 2743 7176 111 32 16 chr15 34323844 34324896 -51370858 + MER11C LTR ERVK 3 1071 0 1241 279 72 65 chr15 34324973 34325231 -51370523 - L1M4 LINE L1 -1371 4775 4520 2213 118 0 7 chr15 34325231 34325528 -51370226 + AluSx SINE Alu 2 296 -16 1241 279 72 65 chr15 34325528 34326075 -51369679 - L1M4 LINE L1 -1626 4520 3964 2391 71 0 14 chr15 34326138 34326435 -51369319 - AluY SINE Alu -18 293 1 21 0 0 0 chr15 34326435 34326456 -51369298 + AT_rich Low_complexity Low_complexity 1 21 0 353 228 118 37 chr15 34326566 34326702 -51369052 - L1M4 LINE L1 -2228 3918 3772 1038 230 161 50 chr15 34326704 34327146 -51368608 + L2 LINE L2 2479 2988 -325 309 311 8 0 chr15 34327173 34327292 -51368462 + (TA)n Simple_repeat Simple_repeat 1 120 0 754 259 85 49 chr15 34327293 34327598 -51368156 + L2 LINE L2 2997 3312 -1 1084 179 0 0 chr15 34327794 34327962 -51367792 - AluJb SINE Alu -13 299 132 1080 187 34 14 chr15 34328500 34328709 -51367045 + AluJo SINE Alu 87 299 -13 1668 181 25 16 chr15 34329235 34329550 -51366204 - 7SLRNA srpRNA srpRNA -2 318 1 435 257 86 0 chr15 34330083 34330188 -51365566 + MER82 DNA MER2_type 540 653 0 638 279 84 37 chr15 34330285 34330583 -51365171 + L2 LINE L2 1465 1776 -1538 23 33 0 0 chr15 34330731 34330761 -51364993 + AT_rich Low_complexity Low_complexity 1 30 0 235 325 113 0 chr15 34330887 34331081 -51364673 - L1MC4a LINE L1 -1731 6077 5862 270 0 0 0 chr15 34331104 34331134 -51364620 + (TG)n Simple_repeat Simple_repeat 2 31 0 2429 167 71 29 chr15 34331175 34331284 -51364470 + LTR64 LTR ERVK 3 106 -407 2143 130 0 0 chr15 34331284 34331591 -51364163 - AluSx SINE Alu -5 307 1 2429 167 71 29 chr15 34331591 34331971 -51363783 + LTR64 LTR ERVK 106 513 0 1950 158 7 0 chr15 34332539 34332837 -51362917 - AluJb SINE Alu -9 303 4 2003 106 33 0 chr15 34333420 34333718 -51362036 + AluSx SINE Alu 1 307 0 415 162 247 19 chr15 34333753 34333907 -51361847 - MER53 DNA DNA 0 189 1 2643 201 36 4 chr15 34334426 34334981 -51360773 + MER90 LTR ERV1 1 614 0 2434 151 34 80 chr15 34335014 34335491 -51360263 - LTR32 LTR ERVL 0 471 17 194 281 18 0 chr15 34336702 34336759 -51358995 + MIR3 SINE MIR 147 204 -4 266 208 135 10 chr15 34336882 34336978 -51358776 + L1ME4a LINE L1 5392 5499 -622 494 238 133 95 chr15 34336998 34337236 -51358518 + L1ME4a LINE L1 5551 5779 -342 684 221 41 17 chr15 34337236 34337408 -51358346 - MER5B DNA MER1_type -1 177 2 494 238 133 95 chr15 34337408 34337511 -51358243 + L1ME4a LINE L1 5779 5912 -209 3041 117 19 0 chr15 34337511 34337937 -51357817 + MER57B LTR ERV1 1 434 0 494 238 133 95 chr15 34337937 34337994 -51357760 + L1ME4a LINE L1 5912 5965 -156 2020 139 180 14 chr15 34338220 34338587 -51357167 - MSTA LTR MaLR 0 428 1 813 199 7 0 chr15 34338874 34339010 -51356744 + AluJo SINE Alu 120 256 -56 342 0 0 0 chr15 34339045 34339083 -51356671 + (TG)n Simple_repeat Simple_repeat 2 39 0 1771 153 7 33 chr15 34339579 34339886 -51355868 - AluJb SINE Alu -12 300 2 352 234 188 16 chr15 34340460 34340588 -51355166 - MIR SINE MIR -32 230 81 1576 159 4 19 chr15 34341050 34341308 -51354446 + AluJo SINE Alu 44 297 -15 268 279 0 0 chr15 34342079 34342140 -51353614 + HAL1 LINE L1 258 318 -2189 237 128 0 0 chr15 34342140 34342187 -51353567 + (TG)n Simple_repeat Simple_repeat 2 48 0 2560 147 10 76 chr15 34342188 34342677 -51353077 + LTR32 LTR ERVL 15 471 0 309 287 69 0 chr15 34342699 34342800 -51352954 + HAL1 LINE L1 341 448 -2059 4330 135 13 5 chr15 34343010 34343638 -51352116 + MER51A LTR ERV1 1 633 -1 727 246 135 30 chr15 34343711 34344073 -51351681 + HAL1 LINE L1 2097 2496 -11 395 183 0 0 chr15 34345315 34345386 -51350368 - MSTD LTR MaLR 0 396 326 11202 111 17 7 chr15 34345442 34347059 -51348695 - Tigger1 DNA MER2_type -32 2386 754 2372 92 3 3 chr15 34348542 34348846 -51346908 + AluSc SINE Alu 1 304 -5 277 134 15 15 chr15 34348916 34348983 -51346771 + (TG)n Simple_repeat Simple_repeat 2 68 0 273 282 59 29 chr15 34350019 34350189 -51345565 + LTR33A LTR ERVL 9 183 -340 438 234 193 0 chr15 34350242 34350413 -51345341 + LTR33A LTR ERVL 317 520 -3 2085 111 14 0 chr15 34350440 34350728 -51345026 - AluSx SINE Alu -20 292 1 717 277 31 71 chr15 34351281 34351635 -51344119 - MER102b DNA MER1_type 0 341 2 284 295 19 29 chr15 34351723 34351828 -51343926 - MARNA DNA Mariner -170 416 313 1060 200 0 0 chr15 34352758 34352933 -51342821 + FAM SINE Alu 1 175 0 2169 146 18 15 chr15 34352958 34353294 -51342460 + MER1B DNA MER1_type 1 337 -2 2473 94 3 0 chr15 34353398 34353707 -51342047 - AluSx SINE Alu -2 310 1 2590 52 0 3 chr15 34354114 34354420 -51341334 - AluY SINE Alu -6 305 1 535 122 14 0 chr15 34354561 34354635 -51341119 - MER1B DNA MER1_type 0 329 255 1775 120 3 35 chr15 34354665 34354948 -51340806 - MER1B DNA MER1_type -65 274 1 759 279 56 89 chr15 34355061 34355439 -51340315 + MLT1H LTR MaLR 14 439 -110 329 275 0 12 chr15 34355461 34355541 -51340213 - MLT1H LTR MaLR -393 156 78 981 245 158 44 chr15 34355588 34356040 -51339714 - MLT1H1 LTR MaLR -8 541 1 371 274 74 122 chr15 34356063 34356399 -51339355 - MLT1H1-int LTR MaLR -24 1347 1028 272 347 53 12 chr15 34356945 34357153 -51338601 - MLT1H1-int LTR MaLR -834 537 314 2266 57 14 10 chr15 34357213 34357509 -51338245 + AluY SINE Alu 1 297 -14 1839 148 0 10 chr15 34357621 34357919 -51337835 - AluSx SINE Alu -17 295 1 213 121 0 0 chr15 34357936 34357969 -51337785 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 556 250 55 47 chr15 34358105 34358341 -51337413 + L1MC5 LINE L1 7713 7950 -11 4358 178 10 48 chr15 34359509 34360256 -51335498 + L1MC1 LINE L1 24 737 -5689 1951 125 13 26 chr15 34360256 34360559 -51335195 - AluY SINE Alu -10 301 3 4358 178 10 48 chr15 34360559 34360643 -51335111 + L1MC1 LINE L1 737 823 -5603 909 174 174 5 chr15 34360643 34360827 -51334927 + AluJb SINE Alu 84 298 -14 2212 126 0 0 chr15 34360827 34361120 -51334634 + AluSx SINE Alu 1 293 -19 6405 195 45 57 chr15 34361120 34361966 -51333788 + L1MC1 LINE L1 820 1675 -4751 2358 103 0 0 chr15 34361966 34362276 -51333478 + AluSg SINE Alu 1 310 0 6405 195 45 57 chr15 34362276 34362686 -51333068 + L1MC1 LINE L1 1675 2088 -4338 1403 203 105 0 chr15 34362686 34362952 -51332802 + AluJb SINE Alu 1 294 -18 6405 195 45 57 chr15 34362952 34364060 -51331694 + L1MC1 LINE L1 2088 3208 -3218 1549 167 62 11 chr15 34364060 34364335 -51331419 + AluJo SINE Alu 1 289 -23 6405 195 45 57 chr15 34364335 34364651 -51331103 + L1MC1 LINE L1 3208 3526 -2900 747 174 8 15 chr15 34364651 34364783 -51330971 - FLAM_C SINE Alu -2 131 1 6405 195 45 57 chr15 34364783 34365704 -51330050 + L1MC1 LINE L1 3526 4383 -2043 15478 26 2 0 chr15 34365708 34368308 -51327446 - L1PA5 LINE L1 -2 6152 3546 6983 54 13 0 chr15 34368308 34369659 -51326095 - L1P2 LINE L1 -368 5786 4424 3133 223 22 87 chr15 34369659 34370894 -51324860 + L1MC1 LINE L1 4377 5531 -895 2843 7 0 0 chr15 34371205 34371512 -51324242 - AluYa5 SINE Alu -4 307 1 237 179 0 18 chr15 34372092 34372148 -51323606 + A-rich Low_complexity Low_complexity 4 58 0 2042 122 0 7 chr15 34372639 34372955 -51322799 - AluSx SINE Alu 0 314 1 6226 123 10 35 chr15 34373667 34373758 -51321996 + L1MC1 LINE L1 5535 5627 -986 1641 172 31 17 chr15 34373758 34374048 -51321706 + AluJb SINE Alu 1 294 -18 6226 123 10 35 chr15 34374048 34375058 -51320696 + L1MC1 LINE L1 5627 6609 -4 2219 100 7 23 chr15 34375101 34375410 -51320344 - AluSx SINE Alu -8 304 1 249 108 0 0 chr15 34375471 34375508 -51320246 + (A)n Simple_repeat Simple_repeat 1 37 0 24 0 0 0 chr15 34376218 34376242 -51319512 + AT_rich Low_complexity Low_complexity 1 24 0 192 345 129 9 chr15 34376669 34376785 -51318969 - L2 LINE L2 0 3272 3143 183 342 26 35 chr15 34376908 34377022 -51318732 - L2 LINE L2 -327 2986 2874 229 299 0 26 chr15 34377104 34377181 -51318573 + MLT1K LTR MaLR 40 114 -474 558 252 103 79 chr15 34377271 34378037 -51317717 - L1MC5 LINE L1 -36 7925 7179 952 151 27 0 chr15 34378037 34378222 -51317532 - L1MA4 LINE L1 -6 6294 6105 1815 181 0 13 chr15 34378222 34378526 -51317228 - AluJo SINE Alu -12 300 1 558 252 103 79 chr15 34378526 34378608 -51317146 - L1MC5 LINE L1 -781 7180 7055 306 310 62 8 chr15 34378682 34378811 -51316943 - L1ME3A LINE L1 -28 6142 6007 2220 103 0 0 chr15 34378942 34379234 -51316520 - AluY SINE Alu -19 292 1 347 178 136 17 chr15 34379243 34379361 -51316393 - L1MC5 LINE L1 -440 7521 7390 1871 110 4 8 chr15 34379373 34379653 -51316101 - AluSx SINE Alu 0 306 28 1041 171 47 85 chr15 34379653 34380024 -51315730 - L1MC5 LINE L1 -827 7134 6797 999 195 54 36 chr15 34380454 34380613 -51315141 - L1MC5 LINE L1 -2272 5536 5368 2209 167 39 112 chr15 34380613 34381211 -51314543 - MER41C LTR ERV1 0 554 1 999 195 54 36 chr15 34381211 34381328 -51314426 - L1MC5 LINE L1 -2440 5368 5255 234 320 51 0 chr15 34381490 34381646 -51314108 - L1MC5 LINE L1 -1458 4688 4525 2193 119 0 0 chr15 34381704 34381999 -51313755 - AluSx SINE Alu -17 295 1 22 0 0 0 chr15 34382023 34382045 -51313709 + AT_rich Low_complexity Low_complexity 1 22 0 4576 69 0 0 chr15 34382104 34382684 -51313070 + L1PA5 LINE L1 5574 6153 -1 2105 101 49 0 chr15 34382979 34383265 -51312489 - AluSq SINE Alu -13 300 1 275 383 81 11 chr15 34383339 34383624 -51312130 - L2 LINE L2 -1001 2313 2009 1280 179 81 54 chr15 34384350 34384507 -51311247 - MER2 DNA MER2_type 0 344 193 2228 115 0 0 chr15 34384507 34384803 -51310951 - AluSx SINE Alu -16 296 1 1280 179 81 54 chr15 34384803 34384980 -51310774 - MER2 DNA MER2_type -151 193 1 299 293 104 37 chr15 34385471 34385635 -51310119 - L3 LINE CR1 -876 701 527 208 234 79 22 chr15 34385624 34385706 -51310048 - MIR SINE MIR -135 73 7 * 1429 229 93 20 chr15 34385936 34386378 -51309376 - MLT1J LTR MaLR -37 474 1 182 304 209 0 chr15 34386896 34387011 -51308743 + MIR SINE MIR 3 141 -121 26 50 0 0 chr15 34387298 34387338 -51308416 + AT_rich Low_complexity Low_complexity 1 40 0 576 263 127 15 chr15 34387930 34388189 -51307565 + MLT1L LTR MaLR 316 603 -12 192 77 0 0 chr15 34393505 34393531 -51302223 + (TTGGGG)n Simple_repeat Simple_repeat 6 31 0 2029 120 36 17 chr15 34396142 34396443 -51299311 + AluSx SINE Alu 1 307 -5 25 0 0 0 chr15 34397774 34397799 -51297955 + AT_rich Low_complexity Low_complexity 1 25 0 305 289 42 30 chr15 34398305 34398471 -51297283 + MARNA DNA Mariner 327 494 -92 540 283 131 11 chr15 34398753 34398944 -51296810 + MIR SINE MIR 1 214 -48 22 35 0 0 chr15 34399644 34399673 -51296081 + AT_rich Low_complexity Low_complexity 1 29 0 206 266 16 0 chr15 34399685 34399749 -51296005 + (TA)n Simple_repeat Simple_repeat 1 65 0 216 0 0 0 chr15 34401801 34401825 -51293929 + (T)n Simple_repeat Simple_repeat 1 24 0 239 250 135 29 chr15 34402764 34402868 -51292886 - MIR3 SINE MIR -6 202 88 316 352 184 31 chr15 34403775 34404096 -51291658 + L2 LINE L2 2913 3282 -31 1084 207 59 31 chr15 34404394 34404837 -51290917 - LTR56 LTR ERV1 -2 441 9 187 389 80 23 chr15 34405183 34405358 -51290396 - L3 LINE CR1 -13 1564 1380 2474 61 0 0 chr15 34405703 34405997 -51289757 + AluY SINE Alu 17 310 -1 491 216 52 0 chr15 34406249 34406365 -51289389 - MIR SINE MIR -34 228 107 364 95 48 0 chr15 34406434 34406497 -51289257 + L1P LINE L1 3261 3326 -2820 7629 100 17 2 chr15 34406498 34407691 -51288063 + L1P LINE L1 3259 4469 -1677 5846 67 18 43 chr15 34407692 34408758 -51286996 + SVA Other Other 2 866 -520 1204 100 26 112 chr15 34408789 34409209 -51286545 + SVA Other Other 483 866 -520 189 359 0 0 chr15 34409313 34409352 -51286402 + T-rich Low_complexity Low_complexity 1 39 0 3615 174 24 1 chr15 34409468 34410179 -51285575 - L1 LINE L1 -1022 5124 4393 414 39 0 0 chr15 34410179 34410231 -51285523 + (TG)n Simple_repeat Simple_repeat 1 52 0 3615 174 24 1 chr15 34410231 34410278 -51285476 - L1 LINE L1 -1753 4393 4349 22 0 0 0 chr15 34410680 34410702 -51285052 + AT_rich Low_complexity Low_complexity 1 22 0 6560 81 16 8 chr15 34410758 34412024 -51283730 - L1PA10 LINE L1 0 6168 4899 213 39 0 0 chr15 34412031 34412057 -51283697 + (T)n Simple_repeat Simple_repeat 1 26 0 * 321 261 126 17 chr15 34412056 34412175 -51283579 + MER112 DNA MER1_type 129 260 0 338 266 25 13 chr15 34412216 34412295 -51283459 + MIR3 SINE MIR 81 160 -48 2251 110 0 0 chr15 34412301 34412602 -51283152 - AluSg SINE Alu -8 302 2 429 221 14 131 chr15 34412605 34412750 -51283004 - MER5B DNA MER1_type -1 177 50 6553 73 8 29 chr15 34412763 34413688 -51282066 - SVA Other Other 0 1386 482 21 36 0 0 chr15 34413733 34413761 -51281993 + GC_rich Low_complexity Low_complexity 1 28 0 615 266 164 20 chr15 34414451 34414695 -51281059 + L1M4 LINE L1 105 383 -6159 6297 223 102 22 chr15 34414704 34415764 -51279990 + L1M4 LINE L1 2564 3538 -3106 2510 48 3 0 chr15 34415764 34416059 -51279695 - AluY SINE Alu -15 296 1 6297 223 102 22 chr15 34416059 34417278 -51278476 + L1M4 LINE L1 3538 5034 -1610 1998 138 3 3 chr15 34417310 34417606 -51278148 + AluSx SINE Alu 3 298 -14 613 285 133 51 chr15 34418482 34419075 -51276679 + L1ME4a LINE L1 3204 3845 -2799 767 289 53 31 chr15 34419076 34419486 -51276268 + L1ME4a LINE L1 3914 4335 -2309 1697 153 70 0 chr15 34419486 34419773 -51275981 - AluJo SINE Alu -5 307 1 767 289 53 31 chr15 34419773 34419895 -51275859 + L1ME4a LINE L1 4335 4453 -2191 305 312 52 48 chr15 34420390 34420621 -51275133 + L1ME4a LINE L1 5094 5325 -1319 28 0 0 0 chr15 34420774 34420802 -51274952 + AT_rich Low_complexity Low_complexity 1 28 0 330 289 111 26 chr15 34421145 34421335 -51274419 + L1ME4a LINE L1 6392 6597 -22 681 133 70 28 chr15 34421617 34421726 -51274028 + L1MA5A LINE L1 5468 5586 -711 2398 77 0 0 chr15 34421726 34422023 -51273731 - AluY SINE Alu -13 298 2 681 133 70 28 chr15 34422023 34422056 -51273698 + L1MA5A LINE L1 5586 5616 -681 * 20301 128 35 29 chr15 34422039 34425441 -51270313 + L1MA3 LINE L1 11 3431 -4134 7470 140 20 11 chr15 34425436 34426358 -51269396 + L1MA3 LINE L1 5332 6244 -1480 * 2215 125 0 0 chr15 34426358 34426670 -51269084 - AluSx SINE Alu 0 312 1 7470 140 20 11 chr15 34426670 34428114 -51267640 + L1MA3 LINE L1 6244 7719 -5 207 0 0 0 chr15 34428127 34428150 -51267604 + (TAGA)n Simple_repeat Simple_repeat 1 23 0 3330 140 58 3 chr15 34428151 34428737 -51267017 + L1MA5A LINE L1 5610 6227 -70 1031 281 13 50 chr15 34428976 34429440 -51266314 - L1ME3A LINE L1 -4 6166 5741 498 221 8 8 chr15 34429451 34429573 -51266181 - L1ME3A LINE L1 -731 5439 5318 282 284 12 12 chr15 34429869 34429950 -51265804 + MIR3 SINE MIR 97 177 -31 2325 79 0 16 chr15 34430205 34430508 -51265246 - AluY SINE Alu -13 298 1 545 221 24 0 chr15 34430686 34430813 -51264941 - L1MB5 LINE L1 -140 6034 5905 2109 110 3 7 chr15 34430863 34431164 -51264590 + AluSx SINE Alu 10 309 -3 24 0 0 0 chr15 34431450 34431474 -51264280 + AT_rich Low_complexity Low_complexity 1 24 0 1994 136 3 23 chr15 34431684 34432043 -51263711 - AluSx SINE Alu 0 353 1 42515 35 25 1 chr15 34432533 34438543 -51257211 - L1PA2 LINE L1 0 6155 1 1080 173 41 25 chr15 34439063 34439187 -51256567 + AluJb SINE Alu 86 216 -97 183 80 0 0 chr15 34439187 34439212 -51256542 + (TGGGGG)n Simple_repeat Simple_repeat 1 25 0 1080 173 41 25 chr15 34439212 34439312 -51256442 + AluJb SINE Alu 216 313 0 299 170 150 40 chr15 34439314 34439414 -51256340 - MIR3 SINE MIR -31 177 67 210 71 0 0 chr15 34439571 34439599 -51256155 + (TA)n Simple_repeat Simple_repeat 2 29 0 356 260 83 0 chr15 34439607 34439703 -51256051 + L2 LINE L2 3169 3272 0 194 204 37 37 chr15 34440535 34440589 -51255165 - L3 LINE CR1 -9 1568 1515 230 136 23 0 chr15 34441202 34441246 -51254508 + (TA)n Simple_repeat Simple_repeat 2 46 0 225 179 0 0 chr15 34441249 34441305 -51254449 - L1MC4 LINE L1 -1339 6703 6648 1308 164 47 60 chr15 34444007 34444306 -51251448 - AluJo SINE Alu -8 304 10 1676 145 151 0 chr15 34445165 34445489 -51250265 + L1MB5 LINE L1 5802 6174 0 2282 92 0 0 chr15 34445494 34445788 -51249966 - AluY SINE Alu -17 294 1 233 196 0 22 chr15 34446606 34446652 -51249102 + MLT1J1 LTR MaLR 66 110 -336 1689 70 0 9 chr15 34446715 34446928 -51248826 + AluY SINE Alu 1 211 -100 478 160 0 64 chr15 34447029 34447123 -51248631 + Charlie3 DNA MER1_type 2619 2706 -4 749 293 177 39 chr15 34447406 34448857 -51246897 - L1ME3A LINE L1 -231 5922 4196 2053 99 6 64 chr15 34448857 34449170 -51246584 - AluSp SINE Alu -16 297 3 749 293 177 39 chr15 34449170 34449456 -51246298 - L1ME3A LINE L1 -1957 4196 3951 561 252 259 31 chr15 34449468 34449754 -51246000 + L2 LINE L2 2928 3278 -35 270 290 28 52 chr15 34450314 34450562 -51245192 - L1ME3A LINE L1 -3594 2535 2294 340 358 100 52 chr15 34450703 34451161 -51244593 - L1ME3A LINE L1 -5397 722 243 263 242 16 16 chr15 34451428 34451556 -51244198 + (TA)n Simple_repeat Simple_repeat 1 128 0 1858 274 82 42 chr15 34451875 34452045 -51243709 + L1ME3 LINE L1 6 168 -5914 1887 117 4 4 chr15 34452045 34452311 -51243443 - AluSx SINE Alu -13 299 34 1858 274 82 42 chr15 34452311 34453391 -51242363 + L1ME3 LINE L1 168 1203 -4879 341 257 238 0 chr15 34453437 34453643 -51242111 + L1ME3 LINE L1 4775 5029 -1051 2128 95 49 0 chr15 34453663 34453948 -51241806 - AluSx SINE Alu -9 303 5 1308 184 43 16 chr15 34453974 34454229 -51241525 + AluJo SINE Alu 37 298 -14 2028 228 83 21 chr15 34454232 34455049 -51240705 + L1ME3 LINE L1 5077 5951 -145 872 221 112 93 chr15 34455063 34455430 -51240324 + LTR16A LTR ERVL 18 391 -59 401 244 22 33 chr15 34455430 34455520 -51240234 + MER5A DNA MER1_type 3 91 -98 517 221 137 65 chr15 34455520 34455827 -51239927 + HAL1 LINE L1 748 1076 -1431 266 186 167 29 chr15 34455836 34455938 -51239816 + LTR33 LTR ERVL 4 119 -402 21 71 0 0 chr15 34456097 34456139 -51239615 + AT_rich Low_complexity Low_complexity 1 42 0 32 26 0 0 chr15 34459441 34459480 -51236274 + AT_rich Low_complexity Low_complexity 1 39 0 2999 174 55 17 chr15 34459602 34460244 -51235510 + L1MB5 LINE L1 5497 6162 -12 286 292 108 26 chr15 34460449 34460610 -51235144 - MER20B DNA MER1_type -4 215 45 259 119 2 134 chr15 34461369 34461436 -51234318 + MLT1C LTR MaLR 6 67 -307 673 153 146 0 chr15 34461442 34461520 -51234234 + MLT1C LTR MaLR 309 374 -93 207 0 0 0 chr15 34461520 34461543 -51234211 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 673 153 146 0 chr15 34461543 34461601 -51234153 + MLT1C LTR MaLR 374 465 -2 564 298 120 18 chr15 34461619 34462313 -51233441 - L1ME LINE L1 -399 5771 5007 209 299 65 0 chr15 34462415 34462492 -51233262 + L2 LINE L2 3186 3267 -5 743 168 122 10 chr15 34463253 34463450 -51232304 + L1MC5 LINE L1 7250 7468 -493 481 196 135 14 chr15 34463542 34463690 -51232064 + L1MC5 LINE L1 7747 7912 -49 847 144 8 0 chr15 34463713 34463845 -51231909 + FLAM_C SINE Alu 1 133 0 30820 102 29 62 chr15 34464653 34470990 -51224764 + L1PA7 LINE L1 39 6151 -3 24 53 0 0 chr15 34471483 34471521 -51224233 + AT_rich Low_complexity Low_complexity 1 38 0 526 301 99 37 chr15 34471649 34472065 -51223689 - L1MC/D LINE L1 -2005 5803 5355 964 214 0 5 chr15 34472065 34472252 -51223502 - MER5A DNA MER1_type -1 188 3 526 301 99 37 chr15 34472252 34472290 -51223464 - L1MC/D LINE L1 -2453 5355 5321 633 328 10 0 chr15 34472317 34472628 -51223126 - L1MC/D LINE L1 -881 5265 4952 2291 82 7 0 chr15 34472804 34473095 -51222659 - AluSx SINE Alu -19 293 1 359 322 50 8 chr15 34473389 34473510 -51222244 + MIR SINE MIR 2 127 -135 504 127 0 38 chr15 34473720 34473799 -51221955 - AluJ/FRAM SINE Alu -21 291 216 1170 179 30 5 chr15 34473845 34474046 -51221708 + AluJb SINE Alu 89 294 -18 2397 176 4 26 chr15 34474066 34474527 -51221227 - L1MA7 LINE L1 -152 6139 5689 23 54 0 0 chr15 34478241 34478278 -51217476 + AT_rich Low_complexity Low_complexity 1 37 0 252 271 133 60 chr15 34478735 34478901 -51216853 - L2 LINE L2 -111 3202 3025 665 285 83 32 chr15 34479243 34479496 -51216258 - Charlie8 DNA MER1_type -2141 276 11 1994 133 13 32 chr15 34480145 34480460 -51215294 - MER1B DNA MER1_type 0 339 31 1706 157 25 4 chr15 34481138 34481412 -51214342 - AluJo SINE Alu -32 280 1 632 187 107 20 chr15 34481971 34482121 -51213633 - FRAM SINE Alu -15 161 1 1509 146 4 48 chr15 34482274 34482542 -51213212 + AluJo SINE Alu 40 295 -17 683 268 78 17 chr15 34483257 34483488 -51212266 + MIR SINE MIR 5 249 -13 283 261 176 48 chr15 34483582 34483770 -51211984 - L2 LINE L2 -8 3305 3094 308 265 86 101 chr15 34483873 34484280 -51211474 + MLT1J LTR MaLR 109 509 -2 331 309 47 3 chr15 34484280 34484431 -51211323 - L2 LINE L2 -225 3047 2892 358 316 163 5 chr15 34484697 34484906 -51210848 - MIR SINE MIR -19 243 2 222 37 0 0 chr15 34484914 34484941 -51210813 + (T)n Simple_repeat Simple_repeat 1 27 0 302 304 0 13 chr15 34485493 34485572 -51210182 - L2 LINE L2 -203 3069 2992 816 165 69 69 chr15 34485599 34485817 -51209937 - MER20 DNA MER1_type -1 218 1 1091 185 9 24 chr15 34485825 34486036 -51209718 - MER3 DNA MER1_type 0 209 2 399 349 203 8 chr15 34486093 34486477 -51209277 - L2 LINE L2 -455 2859 2401 1169 241 84 40 chr15 34486529 34486779 -51208975 + MLT1D LTR MaLR 85 361 -144 219 36 0 0 chr15 34486779 34486807 -51208947 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1169 241 84 40 chr15 34486807 34486959 -51208795 + MLT1D LTR MaLR 361 505 0 872 313 112 59 chr15 34486975 34488018 -51207736 - L2 LINE L2 -941 2373 1276 401 332 92 7 chr15 34488073 34488344 -51207410 + L1MEc LINE L1 35 328 -6068 331 272 13 58 chr15 34488552 34488715 -51207039 + L1MEc LINE L1 726 878 -5518 1832 135 3 43 chr15 34488715 34489018 -51206736 + AluSq SINE Alu 1 291 -22 331 272 13 58 chr15 34489018 34489078 -51206676 + L1MEc LINE L1 878 939 -5457 2236 94 0 0 chr15 34489226 34489503 -51206251 + AluSq SINE Alu 15 291 -22 284 232 0 50 chr15 34489503 34489602 -51206152 + L1MEc LINE L1 1018 1111 -5285 2005 126 0 26 chr15 34489676 34489978 -51205776 + AluSc SINE Alu 1 294 -15 2493 231 125 18 chr15 34490004 34491015 -51204739 + L1M4 LINE L1 3951 5069 -1077 240 218 99 10 chr15 34491055 34491156 -51204598 + L1M4 LINE L1 44 153 -6389 718 299 64 59 chr15 34491346 34491921 -51203833 + L1M4 LINE L1 1440 2017 -4629 883 307 67 50 chr15 34491921 34492715 -51203039 + L2 LINE L2 2458 3269 -44 328 330 55 0 chr15 34492944 34493035 -51202719 + L2 LINE L2 3171 3266 -6 234 316 103 69 chr15 34493108 34493282 -51202472 + L2 LINE L2 3088 3267 -5 287 277 0 0 chr15 34493290 34493355 -51202399 + MIR SINE MIR 117 181 -81 405 0 0 0 chr15 34493386 34493431 -51202323 + (CA)n Simple_repeat Simple_repeat 2 46 0 323 135 0 0 chr15 34545015 34545067 -51150687 - MLT1D LTR MaLR -360 145 94 21 71 0 0 chr15 34545670 34545712 -51150042 + AT_rich Low_complexity Low_complexity 1 42 0 183 301 157 24 chr15 34546455 34546538 -51149216 + L2 LINE L2 2224 2317 -997 614 154 0 0 chr15 34546945 34547049 -51148705 - LTR40a LTR ERVL -16 503 400 4761 141 24 18 chr15 34547068 34547947 -51147807 - L1MA8 LINE L1 -2 6289 5406 2577 270 31 28 chr15 34547988 34549436 -51146318 - L1M2 LINE L1 -4167 3001 1535 1623 184 3 20 chr15 34550132 34550426 -51145328 - AluJb SINE Alu -22 290 2 305 370 37 15 chr15 34550470 34550605 -51145149 - L1M2 LINE L1 -5991 1107 970 346 300 75 17 chr15 34550608 34550728 -51145026 - LTR40a LTR ERVL -108 411 285 1703 97 79 7 chr15 34551104 34551383 -51144371 - L1MA8 LINE L1 -5 6286 5988 583 345 56 22 chr15 34551387 34552290 -51143464 + HERVL LTR ERVL 4320 5287 -367 1205 223 41 74 chr15 34552298 34552715 -51143039 + LTR16A1 LTR ERVL 55 457 0 1600 188 0 7 chr15 34552725 34553007 -51142747 + AluJo SINE Alu 1 280 -32 213 159 0 0 chr15 34553043 34553087 -51142667 + A-rich Low_complexity Low_complexity 1 44 0 1187 235 99 71 chr15 34553131 34553668 -51142086 + MER77 LTR ERV1 52 603 -2 431 265 127 17 chr15 34554823 34555004 -51140750 + MIR SINE MIR 62 262 0 189 121 0 0 chr15 34556489 34556522 -51139232 + (T)n Simple_repeat Simple_repeat 1 33 0 186 43 0 0 chr15 34556695 34556718 -51139036 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2031 122 31 0 chr15 34557189 34557477 -51138277 - AluSx SINE Alu -15 297 1 180 359 28 14 chr15 34557507 34557652 -51138102 + L2 LINE L2 3167 3313 0 254 370 98 16 chr15 34558255 34558501 -51137253 + L2 LINE L2 1713 1978 -1336 18534 162 73 53 chr15 34558626 34560358 -51135396 + L1MA3 LINE L1 24 1721 -6003 528 16 0 0 chr15 34560358 34560419 -51135335 + (GA)n Simple_repeat Simple_repeat 2 62 0 18534 162 73 53 chr15 34560419 34561880 -51133874 + L1MA3 LINE L1 1721 3152 -4572 1679 186 27 0 chr15 34561880 34561993 -51133761 + AluJo SINE Alu 3 111 -201 378 0 0 0 chr15 34561993 34562035 -51133719 + (CA)n Simple_repeat Simple_repeat 2 43 0 1679 186 27 0 chr15 34562035 34562217 -51133537 + AluJo SINE Alu 111 306 -6 18534 162 73 53 chr15 34562217 34564420 -51131334 + L1MA3 LINE L1 3152 5311 -2413 1428 153 0 5 chr15 34564420 34564636 -51131118 - AluJo SINE Alu -37 275 61 18534 162 73 53 chr15 34564636 34566574 -51129180 + L1MA3 LINE L1 5311 7724 0 183 256 0 0 chr15 34567195 34567234 -51128520 - MIR SINE MIR -6 256 218 4618 168 45 10 chr15 34567237 34568841 -51126913 - L1MB7 LINE L1 -5 6179 4530 1811 215 55 25 chr15 34568837 34569367 -51126387 - L1MB7 LINE L1 -2099 4047 3502 * 279 289 74 0 chr15 34569514 34569649 -51126105 + L1M4 LINE L1 2272 2416 -3730 710 207 88 72 chr15 34569691 34570025 -51125729 + HsTC2 DNA Tc2 11 1677 -221 1093 246 51 10 chr15 34570033 34570398 -51125356 - L1ME1 LINE L1 -4 6145 5549 * 2029 210 105 88 chr15 34570392 34571403 -51124351 - L1ME1 LINE L1 -1164 4965 3938 298 305 35 30 chr15 34571527 34571730 -51124024 - L1ME1 LINE L1 -4485 1644 1441 869 280 96 47 chr15 34572341 34573158 -51122596 - L1ME1 LINE L1 -4837 1473 573 722 180 54 14 chr15 34573512 34573758 -51121996 - L1MC2 LINE L1 -3 7764 7529 2247 120 27 27 chr15 34573758 34574133 -51121621 + THE1C LTR MaLR 1 375 0 722 180 54 14 chr15 34574133 34574256 -51121498 - L1MC2 LINE L1 -238 7529 6110 2018 147 48 44 chr15 34574266 34574721 -51121033 - L1MB4 LINE L1 -1 6179 5723 3282 242 56 1 chr15 34574736 34575649 -51120105 - L1M4 LINE L1 -1904 4242 3280 1506 266 55 28 chr15 34575661 34576131 -51119623 + MER74B LTR ERVL 66 548 -74 969 247 101 21 chr15 34576180 34576654 -51119100 - L1M4 LINE L1 -2865 3281 2770 1545 188 92 62 chr15 34576655 34577103 -51118651 + MLT1C LTR MaLR 2 462 -5 1688 239 52 4 chr15 34577103 34577581 -51118173 - L1M4 LINE L1 -3368 2778 2278 2781 165 37 78 chr15 34577617 34578343 -51117411 - L1MB8 LINE L1 -2 6245 5550 650 110 0 0 chr15 34578344 34578435 -51117319 - AluSx SINE Alu -16 293 203 871 75 0 0 chr15 34578437 34578544 -51117210 - AluSx SINE Alu -205 107 1 1831 178 53 63 chr15 34578545 34578729 -51117025 - L1MB8 LINE L1 -692 5555 5371 1652 155 6 65 chr15 34578729 34579052 -51116702 - AluJo SINE Alu -3 309 6 1831 178 53 63 chr15 34579052 34579216 -51116538 - L1MB8 LINE L1 -876 5371 5207 2253 112 3 0 chr15 34579216 34579528 -51116226 - AluSp SINE Alu 0 313 1 1831 178 53 63 chr15 34579528 34579867 -51115887 - L1MB8 LINE L1 -1040 5207 4873 702 294 104 5 chr15 34579879 34580100 -51115654 - MIR SINE MIR -15 247 5 336 306 102 29 chr15 34580793 34580999 -51114755 - L1MB8 LINE L1 -2434 3781 3561 2359 135 54 92 chr15 34581018 34581445 -51114309 - MER67A LTR ERV1 -29 514 109 2241 125 0 0 chr15 34581445 34581756 -51113998 + AluSq SINE Alu 1 311 -2 2359 135 54 92 chr15 34581756 34581862 -51113892 - MER67A LTR ERV1 -434 109 1 42911 32 21 2 chr15 34582439 34588473 -51107281 - L1PA2 LINE L1 -1 6154 1 4216 229 58 46 chr15 34588453 34590183 -51105571 - L1MB8 LINE L1 -2612 3603 1877 * 1064 189 0 11 chr15 34591565 34591771 -51103983 - MLT1A2 LTR MaLR 0 390 188 218 116 23 0 chr15 34591776 34591819 -51103935 + GA-rich Low_complexity Low_complexity 2 45 0 277 164 27 41 chr15 34591865 34591938 -51103816 - MLT1A2 LTR MaLR -222 168 97 390 220 127 0 chr15 34591997 34592115 -51103639 + MER94 DNA DNA 1 133 -1 582 269 14 33 chr15 34593165 34593377 -51102377 + L1ME1 LINE L1 5941 6148 -18 559 324 108 8 chr15 34593386 34593706 -51102048 - L2 LINE L2 -317 2996 2633 438 339 33 6 chr15 34593886 34594069 -51101685 - L2 LINE L2 -2050 1264 1077 824 158 0 6 chr15 34594934 34595092 -51100662 + GA-rich Low_complexity Low_complexity 3 159 0 312 253 127 40 chr15 34596454 34596604 -51099150 - MIR3 SINE MIR -6 202 40 441 298 75 63 chr15 34597374 34597626 -51098128 - L3 LINE CR1 -87 1490 1236 32 75 0 0 chr15 34597692 34597759 -51097995 + AT_rich Low_complexity Low_complexity 1 67 0 656 298 59 4 chr15 34597821 34598059 -51097695 - LTR16C LTR ERVL 0 491 241 907 83 8 0 chr15 34598220 34598341 -51097413 + L1PB1 LINE L1 6029 6150 -1 259 235 184 28 chr15 34598359 34598614 -51097140 - L1ME4a LINE L1 -121 6000 5706 21030 157 47 8 chr15 34598721 34603060 -51092694 + L1MA3 LINE L1 9 4520 -3045 7678 18 1 0 chr15 34603033 34603925 -51091829 + L1PA2 LINE L1 6680 7572 -2 * 11895 144 22 6 chr15 34603919 34607097 -51088657 + L1MA3 LINE L1 4492 7724 0 229 150 25 0 chr15 34607486 34607526 -51088228 - LTR16A LTR ERVL 0 450 410 1149 195 43 102 chr15 34607526 34607900 -51087854 + MLT1A1 LTR MaLR 1 352 -13 1105 270 73 29 chr15 34607906 34608287 -51087467 - LTR16A LTR ERVL -35 415 18 868 335 32 36 chr15 34608469 34608691 -51087063 - ERVL LTR ERVL -414 5350 5129 3083 111 150 0 chr15 34608691 34609243 -51086511 + LTR24C LTR ERV1 1 635 0 868 335 32 36 chr15 34609243 34609518 -51086236 - ERVL LTR ERVL -635 5129 4855 389 283 41 21 chr15 34609654 34609799 -51085955 - ERVL LTR ERVL -868 4617 4470 1859 318 104 28 chr15 34609872 34609929 -51085825 - ERVL LTR ERVL -2081 2915 2864 2111 119 0 7 chr15 34609929 34610222 -51085532 + AluSq SINE Alu 1 291 -22 1859 318 104 28 chr15 34610222 34610397 -51085357 - ERVL LTR ERVL -2132 2864 2704 2432 93 0 0 chr15 34610397 34610709 -51085045 + AluSx SINE Alu 1 312 0 1859 318 104 28 chr15 34610709 34610952 -51084802 - ERVL LTR ERVL -2292 2704 2481 1815 173 65 6 chr15 34610952 34611293 -51084461 + MLT1A1 LTR MaLR 4 364 -1 1859 318 104 28 chr15 34611293 34611736 -51084018 - ERVL LTR ERVL -2515 2481 1925 1041 317 89 39 chr15 34611775 34612394 -51083360 - ERVL LTR ERVL -3886 1110 461 323 222 56 24 chr15 34612816 34612942 -51082812 - LTR16A1 LTR ERVL 0 457 328 22 35 0 0 chr15 34612982 34613011 -51082743 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr15 34613072 34613093 -51082661 + AT_rich Low_complexity Low_complexity 1 21 0 601 217 70 0 chr15 34613495 34613638 -51082116 - MIR SINE MIR -32 230 78 1411 239 42 21 chr15 34614438 34614964 -51080790 + L1M4 LINE L1 2880 3416 -2730 4800 144 20 69 chr15 34614969 34615954 -51079800 + L1MB8 LINE L1 5183 6148 -30 208 286 0 16 chr15 34616270 34616333 -51079421 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 402 115 0 0 chr15 34616335 34616396 -51079358 + (TA)n Simple_repeat Simple_repeat 1 61 0 718 162 0 8 chr15 34616768 34616885 -51078869 - FLAM_A SINE Alu -17 116 1 3538 259 18 37 chr15 34617993 34619277 -51076477 + L1M4 LINE L1 4103 5362 -784 1032 193 19 5 chr15 34619286 34619499 -51076255 + L1MD1 LINE L1 6008 6223 -19 1132 269 82 50 chr15 34619678 34620335 -51075419 - L1MDa LINE L1 -4515 1565 888 2011 249 95 18 chr15 34620350 34620969 -51074785 - L1MDa LINE L1 -5307 763 97 239 296 0 16 chr15 34620976 34621101 -51074653 + (TATATG)n Simple_repeat Simple_repeat 6 128 0 270 197 105 13 chr15 34621112 34621188 -51074566 - L1MDa LINE L1 -5982 88 6 379 321 66 96 chr15 34621200 34621502 -51074252 + L2 LINE L2 2969 3261 -11 2054 120 0 27 chr15 34623549 34623849 -51071905 - AluSx SINE Alu -20 292 1 21 0 0 0 chr15 34624050 34624071 -51071683 + AT_rich Low_complexity Low_complexity 1 21 0 249 312 152 60 chr15 34626348 34626697 -51069057 + L2 LINE L2 2553 2933 -381 364 281 129 6 chr15 34626733 34626911 -51068843 + L2 LINE L2 3039 3238 -75 267 289 164 41 chr15 34627878 34628543 -51067211 - L1MEc LINE L1 -1548 4834 4088 1098 303 119 39 chr15 34628556 34629418 -51066336 - L1MEc LINE L1 -2360 4022 3092 892 171 7 0 chr15 34629475 34629621 -51066133 - AluJb SINE Alu -32 280 134 1535 139 93 19 chr15 34629621 34629879 -51065875 - AluJb SINE Alu -15 297 21 230 289 59 13 chr15 34629897 34630049 -51065705 - L1MEc LINE L1 -3338 3044 2886 327 255 78 89 chr15 34630285 34630556 -51065198 - L1MEc LINE L1 -3928 2456 2189 308 336 34 0 chr15 34630728 34630847 -51064907 - L1MEc LINE L1 -4733 1830 1708 369 302 93 63 chr15 34631049 34631119 -51064635 - L1MEc LINE L1 -4900 1472 1406 1922 124 31 3 chr15 34631119 34631410 -51064344 - AluSx SINE Alu -11 301 3 369 302 93 63 chr15 34631410 34632189 -51063565 - L1MEc LINE L1 -4966 1406 598 233 335 66 16 chr15 34632229 34632411 -51063343 - L1MEc LINE L1 -5919 453 263 225 175 0 0 chr15 34633907 34633947 -51061807 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 47 82 0 0 chr15 34634298 34634408 -51061346 + AT_rich Low_complexity Low_complexity 1 110 0 5763 131 0 0 chr15 34634671 34635989 -51059765 - L1MA2 LINE L1 0 6304 4945 4312 31 0 0 chr15 34635989 34636496 -51059258 + L1PA3 LINE L1 5645 6152 -3 20907 158 39 20 chr15 34636505 34639048 -51056706 - L1M1 LINE L1 -630 7093 4599 1831 171 10 3 chr15 34639048 34639357 -51056397 + AluJb SINE Alu 1 311 -1 20907 158 39 20 chr15 34639357 34643748 -51052006 - L1M1 LINE L1 -3124 4599 16 189 254 131 54 chr15 34644397 34644527 -51051227 - MIR SINE MIR 0 262 123 1503 201 23 23 chr15 34645188 34645531 -51050223 - L1M4 LINE L1 -1062 5084 4742 2249 233 51 8 chr15 34646183 34646715 -51049039 + L1ME1 LINE L1 5612 6166 0 210 299 126 0 chr15 34646717 34646804 -51048950 - L2 LINE L2 -19 3253 3156 705 222 58 1 chr15 34647955 34648129 -51047625 - MER58B DNA MER1_type -2 339 3 383 294 52 44 chr15 34648209 34648345 -51047409 - L2 LINE L2 0 3272 3136 21 36 0 0 chr15 34650337 34650365 -51045389 + AT_rich Low_complexity Low_complexity 1 28 0 1566 71 44 4 chr15 34650535 34650761 -51044993 + L1MA1 LINE L1 6068 6302 0 25 0 0 0 chr15 34651381 34651406 -51044348 + AT_rich Low_complexity Low_complexity 1 25 0 465 209 55 66 chr15 34651781 34651963 -51043791 + L1MC5 LINE L1 7752 7931 -30 355 320 0 8 chr15 34652352 34652443 -51043311 + MIR3 SINE MIR 85 176 -32 2698 100 51 5 chr15 34652443 34652852 -51042902 - MSTA LTR MaLR 0 428 1 355 320 0 8 chr15 34652852 34652882 -51042872 + MIR3 SINE MIR 176 205 -3 315 272 33 0 chr15 34653974 34654066 -51041688 + HsTC2 DNA Tc2 3 97 -1801 438 313 68 6 chr15 34654068 34654231 -51041523 - L1MEd LINE L1 -5472 647 475 298 203 116 0 chr15 34654335 34654404 -51041350 + HsTC2 DNA Tc2 1822 1898 0 4194 159 52 25 chr15 34655239 34656296 -51039458 - L1MB8 LINE L1 -1 6177 5091 967 241 38 8 chr15 34656576 34656841 -51038913 - L1ME1 LINE L1 -18 6148 5876 2042 148 77 0 chr15 34656869 34657207 -51038547 + THE1B LTR MaLR 1 364 0 4889 90 3 1 chr15 34657207 34657871 -51037883 + THE1B-int LTR MaLR 1 665 -915 364 102 0 0 chr15 34657852 34657911 -51037843 + THE1B-int LTR MaLR 1521 1579 -1 * 2228 114 84 0 chr15 34657911 34658245 -51037509 + THE1B LTR MaLR 3 364 0 339 176 14 27 chr15 34658267 34658341 -51037413 - L1MD1 LINE L1 -412 5830 5758 229 250 19 0 chr15 34658368 34658420 -51037334 + MER3 DNA MER1_type 36 88 -121 * 1073 167 115 45 chr15 34658387 34658674 -51037080 + MER33 DNA MER1_type 9 315 -9 1069 77 0 0 chr15 34659121 34659251 -51036503 + AluYb8 SINE Alu 1 130 -188 37485 86 10 11 chr15 34659261 34665413 -51030341 + L1PA6 LINE L1 11 6152 -2 1294 74 26 26 chr15 34665415 34665604 -51030150 + AluYa5 SINE Alu 120 308 -3 355 229 84 0 chr15 34665615 34665698 -51030056 - MIR SINE MIR -153 109 20 2954 236 71 56 chr15 34666218 34667567 -51028187 - L1ME1 LINE L1 -5 6161 4795 893 275 19 28 chr15 34667570 34667890 -51027864 - L1ME1 LINE L1 -2590 3556 3240 3355 273 143 37 chr15 34667946 34669186 -51026568 + L2 LINE L2 1283 2391 -922 2359 68 3 0 chr15 34669186 34669481 -51026273 + AluY SINE Alu 1 296 -15 3355 273 143 37 chr15 34669481 34669776 -51025978 + L2 LINE L2 2391 2653 -660 1702 186 17 3 chr15 34669776 34670067 -51025687 - AluJb SINE Alu -17 295 1 3355 273 143 37 chr15 34670067 34670367 -51025387 + L2 LINE L2 2653 3313 0 186 204 23 23 chr15 34670434 34670478 -51025276 - MIR3 SINE MIR -157 51 8 203 204 23 0 chr15 34670971 34671015 -51024739 - L2 LINE L2 -1893 1421 1377 255 321 92 101 chr15 34671491 34671927 -51023827 - L2 LINE L2 -5 3267 2836 180 0 0 0 chr15 34672444 34672464 -51023290 + (TG)n Simple_repeat Simple_repeat 2 21 0 224 290 14 29 chr15 34672926 34672995 -51022759 - L2 LINE L2 0 3313 3246 203 235 20 39 chr15 34673027 34673078 -51022676 + MIR SINE MIR 97 146 -62 965 139 14 0 chr15 34673093 34673237 -51022517 - MER5A DNA MER1_type 0 189 44 320 250 12 62 chr15 34673249 34673329 -51022425 + L2 LINE L2 3196 3271 -1 21 36 0 0 chr15 34673430 34673458 -51022296 + AT_rich Low_complexity Low_complexity 1 28 0 294 154 21 21 chr15 34673458 34673601 -51022153 + (TTAA)n Simple_repeat Simple_repeat 1 143 0 30 69 0 0 chr15 34673604 34673662 -51022092 + AT_rich Low_complexity Low_complexity 1 58 0 1464 148 34 10 chr15 34673662 34673960 -51021794 - L1MB2 LINE L1 -3 6168 5864 206 304 80 24 chr15 34673985 34674110 -51021644 + L3 LINE CR1 637 768 -809 16753 167 25 7 chr15 34674515 34678768 -51016986 - L1PA14 LINE L1 0 6161 1833 1400 84 0 0 chr15 34678768 34678946 -51016808 + AluY SINE Alu 128 305 -6 1004 229 120 27 chr15 34679167 34679542 -51016212 - L1MEc LINE L1 -1465 4750 4341 544 244 62 19 chr15 34679560 34679720 -51016034 - MER58C DNA MER1_type -6 209 43 3605 227 82 59 chr15 34679721 34680563 -51015191 - L1MEc LINE L1 -2178 4037 3143 2178 108 0 19 chr15 34680563 34680879 -51014875 - AluSg SINE Alu 0 310 1 3605 227 82 59 chr15 34680879 34681567 -51014187 - L1MEc LINE L1 -3072 3143 2472 766 156 0 88 chr15 34681599 34681759 -51013995 - MER46A DNA MER2_type -90 146 1 302 206 31 10 chr15 34681765 34681862 -51013892 - L1MEc LINE L1 -3793 2422 2324 4016 26 0 0 chr15 34681904 34682370 -51013384 - L1PA3 LINE L1 -167 5988 5523 1337 35 0 35 chr15 34682370 34682538 -51013216 + L1PA3 LINE L1 5987 6152 -3 845 219 204 3 chr15 34682553 34682910 -51012844 - L1MEc LINE L1 -4086 2310 1882 2416 151 40 11 chr15 34682919 34683395 -51012359 - L1MB2 LINE L1 -2 6169 5680 2105 247 64 31 chr15 34683421 34683792 -51011962 - L1M4 LINE L1 -3064 3318 2961 976 160 34 55 chr15 34683792 34684029 -51011725 - L1MB8 LINE L1 -13 6165 5934 2105 247 64 31 chr15 34684029 34684048 -51011706 - L1M4 LINE L1 -3421 2961 2944 1214 89 58 5 chr15 34684048 34684239 -51011515 - L1PB1 LINE L1 -1 6150 5950 2105 247 64 31 chr15 34684239 34684875 -51010879 - L1M4 LINE L1 -3438 2944 2251 3650 234 102 30 chr15 34684878 34686265 -51009489 - L1M4 LINE L1 -4259 2125 542 474 284 57 83 chr15 34686393 34686816 -51008938 - L1M3d LINE L1 -5479 412 1 219 36 0 0 chr15 34686869 34686897 -51008857 + (CA)n Simple_repeat Simple_repeat 2 29 0 290 213 0 0 chr15 34686963 34687024 -51008730 - L1MEc LINE L1 -4631 1765 1705 363 330 54 15 chr15 34687319 34687522 -51008232 - L1MEc LINE L1 -5772 433 223 22 35 0 0 chr15 34688384 34688413 -51007341 + AT_rich Low_complexity Low_complexity 1 29 0 1791 164 4 0 chr15 34690470 34690750 -51005004 - AluJb SINE Alu -31 281 1 1585 144 68 0 chr15 34691133 34691383 -51004371 + AluSx SINE Alu 1 267 -45 215 326 15 59 chr15 34691438 34691573 -51004181 - MIR SINE MIR -64 144 16 31 0 0 0 chr15 34691876 34691907 -51003847 + AT_rich Low_complexity Low_complexity 1 31 0 211 296 0 0 chr15 34692034 34692078 -51003676 - L2 LINE L2 -8 3305 3262 249 189 176 0 chr15 34692265 34692339 -51003415 + MLT1J LTR MaLR 419 505 -6 438 137 0 27 chr15 34692942 34693015 -51002739 - 5S rRNA rRNA -20 101 31 1664 39 0 43 chr15 34693453 34693683 -51002071 + L1PA8 LINE L1 5947 6166 -6 402 364 96 0 chr15 34693828 34694037 -51001717 + L2 LINE L2 2594 2822 -492 289 245 116 45 chr15 34694075 34694230 -51001524 + L2 LINE L2 3133 3298 -15 219 217 22 0 chr15 34694282 34694328 -51001426 + L2 LINE L2 3220 3266 -6 2921 231 73 41 chr15 34695290 34696315 -50999439 + L1MD1 LINE L1 2873 3930 -2216 * 21617 47 3 14 chr15 34696307 34699130 -50996624 + L1P LINE L1 2591 5381 -765 3242 201 61 74 chr15 34699128 34701006 -50994748 + L1MD1 LINE L1 4073 5937 -305 * 816 167 36 42 chr15 34701033 34701225 -50994529 - L1MB7 LINE L1 -326 5858 5668 2537 232 57 55 chr15 34701228 34701723 -50994031 - L1MDa LINE L1 -3090 3450 2951 5184 140 15 25 chr15 34701723 34701982 -50993772 + L1PA15 LINE L1 5056 5316 -849 2377 72 0 22 chr15 34701982 34702300 -50993454 + AluY SINE Alu 1 311 0 5184 140 15 25 chr15 34702300 34703159 -50992595 + L1PA15 LINE L1 5316 6165 0 2537 232 57 55 chr15 34703159 34703622 -50992132 - L1MDa LINE L1 -3589 2951 2490 26 30 0 0 chr15 34703788 34703821 -50991933 + AT_rich Low_complexity Low_complexity 1 33 0 249 281 35 0 chr15 34704207 34704264 -50991490 - L2 LINE L2 0 3272 3214 384 183 207 0 chr15 34704565 34704647 -50991107 - MIR SINE MIR -4 258 160 268 191 0 0 chr15 34705901 34705943 -50989811 - MIR SINE MIR -56 152 111 21 36 0 0 chr15 34706738 34706766 -50988988 + AT_rich Low_complexity Low_complexity 1 28 0 574 197 53 15 chr15 34707250 34707382 -50988372 - MER105 DNA DNA -41 163 27 1121 248 118 14 chr15 34707397 34707898 -50987856 - L1M4 LINE L1 -1328 5316 4764 585 189 30 15 chr15 34707898 34708030 -50987724 - L1MA10 LINE L1 -10 6324 6191 1460 238 61 16 chr15 34708048 34708493 -50987261 - L1ME2 LINE L1 -142 6022 5558 2868 134 41 6 chr15 34708495 34708980 -50986774 - L1PA16 LINE L1 -3 6163 5662 2135 124 0 3 chr15 34708999 34709305 -50986449 - AluSx SINE Alu -7 305 1 2005 293 126 23 chr15 34709306 34709573 -50986181 - L1M4 LINE L1 -1890 4754 4516 2837 3 0 0 chr15 34709573 34709884 -50985870 - AluYa5 SINE Alu 0 311 1 2005 293 126 23 chr15 34709884 34710787 -50984967 - L1M4 LINE L1 -2128 4516 3463 3813 208 66 10 chr15 34710814 34711717 -50984037 - L1MB4 LINE L1 0 6180 5231 424 250 91 40 chr15 34711882 34712058 -50983696 - L1M4 LINE L1 -6294 248 64 337 178 0 0 chr15 34712142 34712215 -50983539 - L1MB4 LINE L1 -3170 2976 2904 239 200 0 36 chr15 34712228 34712283 -50983471 + Tigger5 DNA MER2_type 28 80 -2243 272 167 0 0 chr15 34712340 34712382 -50983372 + Tigger5 DNA MER2_type 2282 2323 0 460 323 5 5 chr15 34712385 34712583 -50983171 - L1MB4 LINE L1 -3246 2900 2703 2596 168 51 38 chr15 34712692 34713080 -50982674 - MER68 LTR ERV1 0 562 163 2414 78 0 0 chr15 34713080 34713388 -50982366 - AluY SINE Alu -3 308 1 2596 168 51 38 chr15 34713388 34713552 -50982202 - MER68 LTR ERV1 -399 163 3 382 310 39 75 chr15 34714696 34714781 -50980973 - L1MEc LINE L1 -4759 1551 1465 1805 82 11 15 chr15 34714781 34715049 -50980705 - L1MA2 LINE L1 0 6304 6038 382 310 39 75 chr15 34715049 34715218 -50980536 - L1MEc LINE L1 -4845 1465 1306 290 281 53 61 chr15 34715233 34715461 -50980293 - L1MEc LINE L1 -4918 1201 976 281 135 77 0 chr15 34715477 34715529 -50980225 - L1ME3A LINE L1 -11 6159 6104 189 0 0 0 chr15 34715824 34715845 -50979909 + (A)n Simple_repeat Simple_repeat 1 21 0 545 313 156 18 chr15 34716170 34716496 -50979258 + L3 LINE CR1 917 1287 -290 245 352 65 19 chr15 34716575 34716683 -50979071 + L3 LINE CR1 1442 1554 -23 1159 247 36 62 chr15 34717268 34717884 -50977870 - L1MC5 LINE L1 -48 7913 7314 * 2711 158 46 23 chr15 34717845 34718114 -50977640 + L1MD2 LINE L1 5318 5579 -780 1666 164 35 11 chr15 34718114 34718401 -50977353 + AluJo SINE Alu 1 294 -18 2711 158 46 23 chr15 34718401 34718728 -50977026 + L1MD2 LINE L1 5579 5936 -423 591 138 28 0 chr15 34718748 34718857 -50976897 - L1MB7 LINE L1 -19 6165 6054 3402 150 29 24 chr15 34718865 34719491 -50976263 - L1MC1 LINE L1 -5 6328 5700 2291 145 12 19 chr15 34719638 34720058 -50975696 - L1MB7 LINE L1 -125 6059 5643 683 160 17 0 chr15 34720061 34720180 -50975574 + MLT1E3 LTR MaLR 504 624 0 381 155 36 12 chr15 34720182 34720266 -50975488 + L1MC4 LINE L1 7542 7627 -415 2235 113 3 22 chr15 34720286 34720604 -50975150 + AluSp SINE Alu 1 312 -1 252 0 0 0 chr15 34720604 34720632 -50975122 + (TA)n Simple_repeat Simple_repeat 2 29 0 1750 143 84 62 chr15 34720637 34721007 -50974747 - LTR24 LTR ERV1 -42 425 48 901 198 85 27 chr15 34721007 34721265 -50974489 + L1MD3 LINE L1 7713 7985 -10 595 247 47 12 chr15 34721269 34721439 -50974315 + L1MC4a LINE L1 6609 6784 -1024 1127 237 65 53 chr15 34721475 34721893 -50973861 - MLT2B1 LTR ERVL -88 432 10 488 199 86 59 chr15 34721898 34721975 -50973779 + L1MC4 LINE L1 6872 6945 -1097 2243 115 0 0 chr15 34721975 34722279 -50973475 + AluSx SINE Alu 1 304 -8 488 199 86 59 chr15 34722279 34722387 -50973367 + L1MC4 LINE L1 6945 7062 -980 732 216 0 55 chr15 34722576 34722757 -50972997 - FRAM SINE Alu 0 40 1 241 145 40 57 chr15 34722763 34722853 -50972901 + L1MC5 LINE L1 7097 7191 -770 227 280 50 50 chr15 34722899 34723395 -50972359 + L1MC4 LINE L1 7268 7758 -284 696 293 63 5 chr15 34723965 34724095 -50971659 - MIR SINE MIR -19 243 93 2329 90 3 0 chr15 34724095 34724394 -50971360 + AluSg SINE Alu 1 300 -10 696 293 63 5 chr15 34724394 34724485 -50971269 - MIR SINE MIR -169 93 9 354 194 148 56 chr15 34725012 34725120 -50970634 - MIR SINE MIR -95 167 50 225 65 0 0 chr15 34725173 34725204 -50970550 + (CCA)n Simple_repeat Simple_repeat 3 33 0 183 42 0 0 chr15 34726178 34726202 -50969552 + (C)n Simple_repeat Simple_repeat 1 24 0 364 242 67 0 chr15 34726548 34726668 -50969086 + L1MCa LINE L1 20 147 -6279 1094 139 49 67 chr15 34727256 34727489 -50968265 - L1MC2 LINE L1 -11 6333 6104 1862 136 68 0 chr15 34727489 34727769 -50967985 - AluSx SINE Alu -11 301 3 1094 139 49 67 chr15 34727769 34727802 -50967952 - L1MC2 LINE L1 -240 6104 6072 452 238 0 0 chr15 34727804 34727888 -50967866 + FRAM/FAM SINE Alu 1 84 -92 1631 148 3 16 chr15 34727888 34728191 -50967563 - L1MC2 LINE L1 -258 6086 5788 26 74 0 0 chr15 34728193 34728247 -50967507 + AT_rich Low_complexity Low_complexity 1 54 0 232 207 0 17 chr15 34729747 34729805 -50965949 + (TA)n Simple_repeat Simple_repeat 2 58 0 189 147 0 0 chr15 34730364 34730398 -50965356 + (GA)n Simple_repeat Simple_repeat 1 34 0 232 329 239 12 chr15 34730557 34730737 -50965017 - MIR SINE MIR -13 249 35 413 203 24 123 chr15 34730768 34730980 -50964774 - MER112 DNA MER1_type -62 198 8 273 57 0 0 chr15 34731880 34731915 -50963839 + (A)n Simple_repeat Simple_repeat 1 35 0 470 247 36 6 chr15 34732202 34732368 -50963386 - MER104 DNA Tc2 -4 176 6 268 303 0 10 chr15 34732596 34732695 -50963059 - LTR16B LTR ERVL 0 464 367 433 321 91 55 chr15 34732721 34733029 -50962725 - LTR16B LTR ERVL -145 319 1 463 264 18 9 chr15 34733615 34733725 -50962029 + MIR3 SINE MIR 87 197 -11 230 359 13 0 chr15 34733787 34733865 -50961889 - L3 LINE CR1 -1175 402 324 2189 94 30 3 chr15 34734362 34734659 -50961095 - AluSq SINE Alu -8 305 1 231 247 174 33 chr15 34735165 34735410 -50960344 - L1M4 LINE L1 -934 5212 4912 381 279 99 16 chr15 34735436 34735809 -50959945 - L1M4 LINE L1 -1365 4781 4378 704 326 80 10 chr15 34735860 34736274 -50959480 - LTR33 LTR ERVL -77 444 2 226 266 11 11 chr15 34736300 34736394 -50959360 - L1M4 LINE L1 -1795 4351 4258 7601 27 2 0 chr15 34736413 34737757 -50957997 - L1PA4 LINE L1 -3 6152 4809 326 292 169 6 chr15 34737777 34737955 -50957799 - L1M4 LINE L1 -1954 4192 3986 * 332 204 253 43 chr15 34737933 34738119 -50957635 - L1ME4a LINE L1 0 6121 5897 565 250 14 7 chr15 34738225 34738369 -50957385 - MLT1D LTR MaLR -42 463 319 521 251 76 53 chr15 34738634 34738897 -50956857 - L1MEd LINE L1 -5308 811 543 3903 179 49 19 chr15 34739218 34740028 -50955726 + L1MB3 LINE L1 4934 5718 -465 186 43 0 0 chr15 34740028 34740051 -50955703 + (CA)n Simple_repeat Simple_repeat 2 24 0 3903 179 49 19 chr15 34740051 34740268 -50955486 + L1MB3 LINE L1 5718 6005 -178 2093 76 0 28 chr15 34740268 34740624 -50955130 - AluY SINE Alu 0 348 1 3903 179 49 19 chr15 34740624 34740760 -50954994 + L1MB3 LINE L1 6005 6135 -48 2384 64 0 0 chr15 34740766 34741072 -50954682 + AluY SINE Alu 1 306 0 21 0 0 0 chr15 34741072 34741093 -50954661 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr15 34741851 34741887 -50953867 + AT_rich Low_complexity Low_complexity 1 36 0 269 95 95 0 chr15 34741954 34741996 -50953758 + L2 LINE L2 3268 3313 0 24 0 0 0 chr15 34742260 34742284 -50953470 + AT_rich Low_complexity Low_complexity 1 24 0 2224 115 0 0 chr15 34742429 34742733 -50953021 - AluY SINE Alu -7 304 1 2641 25 0 25 chr15 34742753 34743072 -50952682 - AluY SINE Alu 0 311 1 459 299 83 34 chr15 34743367 34743571 -50952183 - MIR SINE MIR 0 262 49 2376 76 0 7 chr15 34744482 34744785 -50950969 + AluY SINE Alu 1 301 -10 412 155 0 14 chr15 34744963 34745034 -50950720 + LTR16A LTR ERVL 52 121 -329 611 281 45 0 chr15 34745075 34745248 -50950506 + LTR16A LTR ERVL 204 384 -66 864 169 19 0 chr15 34745248 34745402 -50950352 + THE1C LTR MaLR 1 157 -218 418 243 47 12 chr15 34745403 34745572 -50950182 + (ACATG)n Simple_repeat Simple_repeat 1 175 0 360 143 182 0 chr15 34745572 34745649 -50950105 + THE1C LTR MaLR 136 226 -149 6325 113 53 8 chr15 34745660 34746660 -50949094 + THE1C-int LTR MaLR 1 1045 -535 1097 86 11 11 chr15 34746658 34746833 -50948921 + THE1C-int LTR MaLR 1405 1579 -1 * 2546 131 3 3 chr15 34746835 34747209 -50948545 + THE1C LTR MaLR 2 375 0 285 229 0 0 chr15 34747210 34747271 -50948483 + LTR16A LTR ERVL 381 441 -9 183 42 0 0 chr15 34747616 34747640 -50948114 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1501 286 141 27 chr15 34748127 34749151 -50946603 - L2 LINE L2 -4 3309 2110 510 259 29 11 chr15 34749152 34749326 -50946428 - MER5B DNA MER1_type -1 177 1 629 190 25 16 chr15 34749345 34749466 -50946288 + FRAM SINE Alu 32 153 -23 535 294 109 25 chr15 34749467 34749625 -50946129 - L2 LINE L2 -1208 2106 1963 207 0 0 0 chr15 34749625 34749648 -50946106 + (GA)n Simple_repeat Simple_repeat 1 23 0 535 294 109 25 chr15 34749648 34749764 -50945990 - L2 LINE L2 -1351 1963 1809 398 302 94 50 chr15 34749917 34750076 -50945678 - L2 LINE L2 -3 3269 3104 236 352 0 19 chr15 34750153 34750261 -50945493 + L2 LINE L2 2617 2722 -592 1794 158 3 14 chr15 34750597 34750882 -50944872 + AluJo SINE Alu 1 282 -30 1754 155 0 4 chr15 34750900 34751164 -50944590 + AluJo SINE Alu 40 302 -10 211 354 23 86 chr15 34751255 34751557 -50944197 + L2 LINE L2 2964 3246 -26 766 219 104 81 chr15 34754069 34754426 -50941328 - MLT1A1 LTR MaLR 0 365 1 324 309 63 78 chr15 34754561 34754830 -50940924 + L2 LINE L2 3004 3268 -4 191 293 52 0 chr15 34756048 34756106 -50939648 + L2 LINE L2 3204 3264 -8 1500 168 8 37 chr15 34759892 34760160 -50935594 + AluJo SINE Alu 37 296 -16 186 224 0 0 chr15 34760598 34760647 -50935107 + (CA)n Simple_repeat Simple_repeat 2 50 0 4922 162 25 31 chr15 34760994 34761975 -50933779 + L1M3f LINE L1 1240 2215 -4350 10701 185 86 14 chr15 34761990 34764115 -50931639 + L1M3f LINE L1 2748 5210 -2355 665 232 8 0 chr15 34764115 34764240 -50931514 + FLAM_A SINE Alu 2 127 -6 10701 185 86 14 chr15 34764240 34765530 -50930224 + L1M3f LINE L1 5210 6407 -1158 7419 225 64 35 chr15 34765537 34765641 -50930113 + L1PA12 LINE L1 1 101 -7483 361 22 0 0 chr15 34765641 34765687 -50930067 - MADE1 DNA Mariner -34 46 1 7419 225 64 35 chr15 34765687 34767192 -50928562 + L1PA12 LINE L1 101 1562 -6022 1919 125 87 32 chr15 34767192 34767537 -50928217 - THE1B LTR MaLR 0 364 1 7419 225 64 35 chr15 34767537 34770165 -50925589 + L1PA12 LINE L1 1562 4159 -3425 27372 35 2 0 chr15 34770184 34774256 -50921498 - L1PA4 LINE L1 -4 6151 2073 1602 83 0 0 chr15 34774253 34774458 -50921296 + L1P LINE L1 1476 1680 -4466 * 734 103 0 9 chr15 34774444 34774551 -50921203 - L1P LINE L1 -4565 1581 1476 * 636 99 0 10 chr15 34774548 34774649 -50921105 + L1P LINE L1 2073 2172 -3974 * 285 320 137 23 chr15 34776565 34776740 -50919014 + MIR3 SINE MIR 6 200 -8 846 228 23 1 chr15 34777272 34777496 -50918258 - L1M LINE L1 -782 5364 5155 1506 175 4 8 chr15 34778421 34778689 -50917065 - AluJo SINE Alu -39 273 7 1399 157 51 8 chr15 34779101 34779356 -50916398 - AluJb SINE Alu -46 266 1 240 342 13 0 chr15 34779508 34779584 -50916170 - L2 LINE L2 -11 3302 3226 676 242 66 77 chr15 34779948 34780312 -50915442 + MLT1A2 LTR MaLR 2 361 -13 1963 130 3 13 chr15 34781029 34781337 -50914417 - AluSx SINE Alu -7 305 1 212 265 243 15 chr15 34781408 34781544 -50914210 - MIR SINE MIR -81 181 15 244 258 61 15 chr15 34781789 34781855 -50913899 - MIR SINE MIR -85 123 55 295 252 0 103 chr15 34782140 34782247 -50913507 + MIR SINE MIR 89 184 -78 407 329 110 0 chr15 34782357 34782503 -50913251 - MIR SINE MIR -57 205 44 397 295 53 27 chr15 34782528 34782768 -50912986 + MIR SINE MIR 12 256 -6 337 301 39 0 chr15 34783233 34783336 -50912418 + MIR SINE MIR 88 194 -68 219 69 0 0 chr15 34783933 34783962 -50911792 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2771 73 0 22 chr15 34784045 34784415 -50911339 + L1PA7 LINE L1 5792 6153 -1 370 276 88 0 chr15 34784494 34784664 -50911090 - MER5A DNA MER1_type 0 189 5 668 183 49 14 chr15 34787675 34787817 -50907937 + L1PA13 LINE L1 5995 6141 -22 275 234 43 29 chr15 34787816 34787987 -50907767 + L1PA13 LINE L1 6072 6141 -22 * 292 233 43 29 chr15 34788020 34788157 -50907597 + L1PA13 LINE L1 6072 6141 -22 292 237 40 40 chr15 34788143 34788361 -50907393 + L1PA13 LINE L1 6061 6141 -22 292 232 43 29 chr15 34788496 34788599 -50907155 + L1PA13 LINE L1 6072 6141 -22 273 221 17 43 chr15 34788585 34788684 -50907070 + L1PA13 LINE L1 6061 6141 -22 * 256 251 43 29 chr15 34788666 34788769 -50906985 + L1PA13 LINE L1 6072 6141 -22 * 425 125 62 25 chr15 34788777 34788857 -50906897 + L1PA13 LINE L1 6081 6163 0 2408 133 14 0 chr15 34789769 34790137 -50905617 - MER83C LTR ERV1 0 373 1 1566 94 5 9 chr15 34791066 34791278 -50904476 - THE1B LTR MaLR -153 211 1 2234 205 61 0 chr15 34791278 34791786 -50903968 + L1MB3 LINE L1 5645 6183 0 877 212 86 71 chr15 34794845 34795227 -50900527 - MLT1B LTR MaLR -2 388 1 304 200 55 0 chr15 34795549 34795659 -50900095 + (CACAG)n Simple_repeat Simple_repeat 4 119 0 624 193 6 17 chr15 34796547 34796728 -50899026 + (CAT)n Simple_repeat Simple_repeat 1 179 0 207 114 0 0 chr15 34796745 34796780 -50898974 + (CAT)n Simple_repeat Simple_repeat 2 36 0 659 197 6 0 chr15 34796827 34797005 -50898749 + (CAT)n Simple_repeat Simple_repeat 1 179 0 267 343 9 19 chr15 34797267 34797375 -50898379 + MIR SINE MIR 74 180 -82 324 355 20 13 chr15 34797392 34797544 -50898210 - MIR SINE MIR -108 154 2 318 316 17 0 chr15 34798180 34798297 -50897457 + L1ME LINE L1 5465 5583 -581 773 128 0 0 chr15 34798297 34798406 -50897348 + AluSq/x SINE Alu 2 110 -202 4044 214 56 17 chr15 34798508 34799230 -50896524 - L1 LINE L1 -1022 5124 4351 2210 84 0 14 chr15 34799230 34799527 -50896227 - AluY SINE Alu -18 293 1 4044 214 56 17 chr15 34799527 34799810 -50895944 - L1 LINE L1 -1795 4351 4080 23 33 0 0 chr15 34802316 34802346 -50893408 + AT_rich Low_complexity Low_complexity 1 30 0 3278 17 0 0 chr15 34802353 34802841 -50892913 - L1PA3 LINE L1 -657 5498 5011 4464 16 0 0 chr15 34802841 34803336 -50892418 + L1PA3 LINE L1 5506 6000 -155 190 29 88 0 chr15 34804087 34804121 -50891633 + T-rich Low_complexity Low_complexity 2 38 0 438 240 39 16 chr15 34805099 34805123 -50890631 - L1MC1 LINE L1 -6 6327 6305 3301 110 31 90 chr15 34805123 34805270 -50890484 - MER4A LTR ERV1 0 600 446 2201 75 0 0 chr15 34805270 34805575 -50890179 - AluY SINE Alu 0 307 3 3301 110 31 90 chr15 34805575 34806061 -50889693 - MER4A LTR ERV1 -154 446 3 438 240 39 16 chr15 34806061 34806165 -50889589 - L1MC1 LINE L1 -28 6305 6196 564 326 96 48 chr15 34806642 34807369 -50888385 + L2 LINE L2 649 1410 -1904 419 69 17 0 chr15 34807376 34807434 -50888320 + Alu SINE Alu 2 60 -258 270 284 0 34 chr15 34808297 34808385 -50887369 + L2 LINE L2 3185 3269 -3 419 210 10 0 chr15 34809100 34809200 -50886554 + GA-rich Low_complexity Low_complexity 1 101 0 1285 158 27 0 chr15 34809589 34809810 -50885944 + MER50 LTR ERV1 22 248 -486 * 1761 153 9 38 chr15 34809804 34810124 -50885630 + MER50 LTR ERV1 397 707 -27 1687 155 16 13 chr15 34810149 34810459 -50885295 - AluJb SINE Alu -1 311 1 1307 152 82 4 chr15 34810884 34811141 -50884613 + L1MA9 LINE L1 5802 6078 -234 341 315 13 13 chr15 34811165 34811314 -50884440 + (TA)n Simple_repeat Simple_repeat 1 149 0 650 240 135 45 chr15 34811314 34811506 -50884248 - MLT2B1 LTR ERVL -21 499 271 2464 161 37 37 chr15 34811506 34811967 -50883787 + LOR1b LTR ERV1 1 461 0 650 240 135 45 chr15 34811967 34812062 -50883692 - MLT2B1 LTR ERVL -249 271 186 246 250 65 46 chr15 34812474 34812582 -50883172 + MER5A DNA MER1_type 59 168 -21 19043 69 2 5 chr15 34813283 34816081 -50879673 - L1P2 LINE L1 -497 5657 2868 1731 67 5 5 chr15 34816181 34816405 -50879349 + L1PA6 LINE L1 5926 6149 -5 1107 251 28 57 chr15 34816444 34816831 -50878923 + LOR1b-int LTR ERV1 333 708 -4163 3701 208 61 48 chr15 34816918 34817850 -50877904 + L1PBa LINE L1 105 1048 -5815 9466 158 38 5 chr15 34817851 34820773 -50874981 + L1PBa LINE L1 1093 4258 -2604 539 69 0 0 chr15 34820904 34820976 -50874778 - L1P LINE L1 -4599 1547 1476 * 764 30 0 0 chr15 34820973 34821073 -50874681 + L1P LINE L1 2073 2172 -3974 14986 75 8 0 chr15 34821073 34823141 -50872613 - L1P LINE L1 -4061 2085 1 12058 167 8 9 chr15 34823140 34823604 -50872150 + L1P LINE L1 2714 3177 -2969 * 2309 94 7 7 chr15 34823604 34823913 -50871841 + AluY SINE Alu 1 309 -2 12058 167 8 9 chr15 34823913 34825765 -50869989 + L1P LINE L1 3177 5029 -1117 11794 187 17 76 chr15 34825762 34831083 -50864671 + L1P4 LINE L1 1222 6175 -694 * 240 311 15 22 chr15 34831078 34831213 -50864541 + L1ME LINE L1 4934 5067 -1079 * 419 305 37 13 chr15 34831400 34831724 -50864030 + L1ME LINE L1 5258 5583 -583 23 0 0 0 chr15 34833955 34833978 -50861776 + AT_rich Low_complexity Low_complexity 1 23 0 325 296 76 22 chr15 34834476 34834699 -50861055 - MARNA DNA Mariner -166 420 186 928 184 134 20 chr15 34835512 34835713 -50860041 + MER58A DNA MER1_type 1 224 0 285 356 110 7 chr15 34836117 34836263 -50859491 - MIR3 SINE MIR -11 197 37 379 275 100 10 chr15 34836305 34836505 -50859249 - LTR33 LTR ERVL 0 521 304 1495 207 12 18 chr15 34837007 34837345 -50858409 - MLT1E3 LTR MaLR 0 624 289 675 144 19 3 chr15 34837373 34837545 -50858209 - MLT1E1 LTR MaLR -424 230 5 21 0 0 0 chr15 34837643 34837664 -50858090 + AT_rich Low_complexity Low_complexity 1 21 0 229 318 0 0 chr15 34839482 34839545 -50856209 - MLT1J LTR MaLR -330 181 119 232 191 85 75 chr15 34839562 34839606 -50856148 - MLT1L LTR MaLR -518 97 55 1056 229 47 0 chr15 34839606 34839820 -50855934 - MER58A DNA MER1_type 0 224 1 232 191 85 75 chr15 34839820 34839869 -50855885 - MLT1L LTR MaLR -560 55 3 7112 111 67 7 chr15 34842113 34843274 -50852480 + Tigger3b DNA MER2_type 1 1231 0 239 394 86 27 chr15 34844235 34844358 -50851396 + L2 LINE L2 2843 2957 -315 1788 178 0 32 chr15 34844358 34844673 -50851081 + AluJb SINE Alu 1 305 -7 239 394 86 27 chr15 34844673 34844955 -50850799 + L2 LINE L2 2957 3272 0 259 268 98 41 chr15 34846344 34846467 -50849287 + MIR SINE MIR 62 191 -71 234 91 0 0 chr15 34847400 34847433 -50848321 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 8111 102 99 30 chr15 34847448 34848725 -50847029 + SVA Other Other 2 1366 -20 7454 31 0 13 chr15 34848885 34849090 -50846664 + L1PA4 LINE L1 5197 5403 -752 2428 24 0 17 chr15 34849090 34849377 -50846377 + AluY SINE Alu 28 309 -2 7454 31 0 13 chr15 34849377 34850139 -50845615 + L1PA4 LINE L1 5403 6152 -3 23 0 0 0 chr15 34850139 34850162 -50845592 + AT_rich Low_complexity Low_complexity 1 23 0 203 175 0 0 chr15 34850267 34850307 -50845447 + (TA)n Simple_repeat Simple_repeat 2 41 0 5014 206 136 49 chr15 34851099 34852952 -50842802 - L1MCa LINE L1 -4394 2032 18 3065 210 76 40 chr15 34852947 34853042 -50842712 - L1M4 LINE L1 -745 5401 5311 * 2138 110 0 17 chr15 34853042 34853342 -50842412 - AluSx SINE Alu -15 297 3 3065 210 76 40 chr15 34853342 34854355 -50841399 - L1M4 LINE L1 -835 5311 4253 393 301 126 15 chr15 34856281 34856436 -50839318 + MIR SINE MIR 38 221 -41 2265 115 0 0 chr15 34856436 34856741 -50839013 + AluSx SINE Alu 1 305 -7 393 301 126 15 chr15 34856741 34856784 -50838970 + MIR SINE MIR 221 258 -4 207 0 0 0 chr15 34857263 34857286 -50838468 + (TA)n Simple_repeat Simple_repeat 2 24 0 1429 132 12 0 chr15 34858139 34858390 -50837364 - L1MA5A LINE L1 -3 6294 6041 485 314 144 0 chr15 34858497 34858691 -50837063 - MIR SINE MIR -11 251 30 866 178 0 0 chr15 34858937 34859100 -50836654 - L1ME1 LINE L1 -308 5858 5696 4325 165 38 14 chr15 34859103 34860134 -50835620 + L1MB2 LINE L1 5105 6164 -7 225 169 0 123 chr15 34860139 34860204 -50835550 + L1ME3A LINE L1 5962 6018 -152 382 307 74 52 chr15 34860862 34861093 -50834661 - MIR SINE MIR -6 256 21 203 171 0 0 chr15 34861956 34861991 -50833763 + MER5B DNA MER1_type 1 35 -143 469 174 0 11 chr15 34861998 34862090 -50833664 + MLT2B1 LTR ERVL 6 96 -424 10220 208 47 24 chr15 34862193 34865317 -50830437 - L1M3 LINE L1 -743 5403 2300 1660 163 38 20 chr15 34865318 34865662 -50830092 + MER65A LTR ERV1 1 350 -95 7973 119 4 46 chr15 34865664 34866476 -50829278 + HSMAR1 DNA Mariner 27 765 -522 2216 125 3 0 chr15 34866476 34866780 -50828974 - AluSq SINE Alu -8 305 1 7973 119 4 46 chr15 34866780 34867281 -50828473 + HSMAR1 DNA Mariner 765 1285 -2 418 125 12 25 chr15 34867281 34867361 -50828393 + MER65A LTR ERV1 365 443 -2 770 258 22 9 chr15 34867397 34867622 -50828132 + MER65A-int LTR ERV1 36 263 -4608 16624 127 16 20 chr15 34867635 34870466 -50825288 + L1P LINE L1 11 2830 -3316 294 238 32 95 chr15 35071203 35071329 -50624425 + MIR SINE MIR 24 141 -67 430 315 73 12 chr15 35071929 35072094 -50623660 + MIR SINE MIR 18 192 -70 266 349 142 9 chr15 35073971 35074183 -50621571 + MIR SINE MIR 22 261 -1 181 281 49 85 chr15 35075227 35075309 -50620445 + MIR SINE MIR 59 137 -125 28 0 0 0 chr15 35075350 35075378 -50620376 + AT_rich Low_complexity Low_complexity 1 28 0 417 244 61 8 chr15 35075956 35076087 -50619667 - L1ME4a LINE L1 -225 5896 5759 594 249 114 0 chr15 35076396 35076590 -50619164 - MIR SINE MIR -6 256 36 299 248 38 60 chr15 35077797 35077930 -50617824 - MIR SINE MIR -19 243 114 545 291 6 0 chr15 35079253 35079411 -50616343 + MIR SINE MIR 98 256 -6 208 291 0 0 chr15 35080151 35080206 -50615548 - L2 LINE L2 -4 3268 3214 220 213 106 0 chr15 35080806 35080853 -50614901 - L2 LINE L2 -5 3267 3216 229 277 10 69 chr15 35081156 35081257 -50614497 + MIR3 SINE MIR 84 178 -30 22 0 0 0 chr15 35082650 35082672 -50613082 + AT_rich Low_complexity Low_complexity 1 22 0 1398 141 34 46 chr15 35082706 35082969 -50612785 - L1MA6 LINE L1 -4 6296 6037 203 290 0 16 chr15 35084242 35084304 -50611450 - MIR3 SINE MIR -7 201 141 189 354 0 25 chr15 35084887 35084966 -50610788 + L2 LINE L2 2961 3037 -235 427 252 81 9 chr15 35085280 35085391 -50610363 + L2 LINE L2 3195 3313 0 48 72 0 0 chr15 35085425 35085522 -50610232 + AT_rich Low_complexity Low_complexity 1 97 0 21 0 0 0 chr15 35087934 35087955 -50607799 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr15 35089240 35089270 -50606484 + AT_rich Low_complexity Low_complexity 1 30 0 2141 122 3 7 chr15 35089833 35090137 -50605617 - AluSx SINE Alu -8 304 2 456 208 0 0 chr15 35091222 35091294 -50604460 - FLAM_A SINE Alu -70 72 1 382 315 123 8 chr15 35093373 35093503 -50602251 - MIR3 SINE MIR -19 189 45 2310 76 0 13 chr15 35093575 35093877 -50601877 - AluY SINE Alu -13 298 1 22 0 0 0 chr15 35094015 35094037 -50601717 + AT_rich Low_complexity Low_complexity 1 22 0 583 269 76 41 chr15 35094311 35094459 -50601295 + L1ME4a LINE L1 5793 5934 -187 324 0 0 0 chr15 35094459 35094495 -50601259 + (TG)n Simple_repeat Simple_repeat 1 36 0 583 269 76 41 chr15 35094495 35094662 -50601092 + L1ME4a LINE L1 5934 6119 -2 300 27 0 0 chr15 35094961 35094998 -50600756 + (CA)n Simple_repeat Simple_repeat 2 38 0 512 214 103 0 chr15 35095449 35095566 -50600188 - L2 LINE L2 0 3313 3185 242 297 44 11 chr15 35096282 35096373 -50599381 + MIR SINE MIR 35 128 -134 269 169 0 31 chr15 35097471 35097536 -50598218 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 2379 50 3 60 chr15 35097987 35098306 -50597448 + AluY SINE Alu 1 301 -10 248 263 40 26 chr15 35099315 35099391 -50596363 - L2 LINE L2 -3 3310 3234 188 301 164 28 chr15 35099500 35099713 -50596041 - L2 LINE L2 -213 3059 2818 2203 107 27 0 chr15 35100478 35100776 -50594978 + AluSx SINE Alu 1 306 -6 225 200 0 0 chr15 35101866 35101911 -50593843 + T-rich Low_complexity Low_complexity 1 45 0 588 124 0 11 chr15 35103481 35103570 -50592184 - MLT1A2 LTR MaLR 0 374 287 * 609 163 0 10 chr15 35103554 35103652 -50592102 - MLT1A2 LTR MaLR -277 97 1 484 259 98 23 chr15 35104371 35104545 -50591209 + MIR3 SINE MIR 21 207 -1 1948 208 24 10 chr15 35104602 35105015 -50590739 - L1MB8 LINE L1 -13 6165 5747 264 196 0 0 chr15 35105990 35106046 -50589708 + MER4-int LTR ERV1 1107 1162 -5436 231 167 0 0 chr15 35106070 35106112 -50589642 - L1MC4 LINE L1 -1339 6703 6662 286 301 44 26 chr15 35106671 35106784 -50588970 + L2 LINE L2 3143 3257 -15 203 161 0 0 chr15 35106897 35106928 -50588826 + polypyrimidine Low_complexity Low_complexity 2 32 0 195 273 0 0 chr15 35106946 35106990 -50588764 - L2 LINE L2 -36 3236 3193 202 317 0 0 chr15 35107410 35107470 -50588284 + MER91 DNA MER1_type 79 138 -2 266 303 140 57 chr15 35108493 35108757 -50586997 + L2 LINE L2 2677 2962 -352 520 267 8 0 chr15 35108816 35108936 -50586818 - L2 LINE L2 0 3272 3152 261 279 262 55 chr15 35108939 35109176 -50586578 + L2 LINE L2 2986 3271 -1 465 274 136 33 chr15 35109298 35109713 -50586041 - L1MEd LINE L1 -980 1510 954 230 309 10 21 chr15 35109730 35109747 -50586007 - L1MA10 LINE L1 -53 6281 6265 874 208 64 5 chr15 35109747 35109949 -50585805 - L1ME3 LINE L1 -60 6102 5889 452 289 65 68 chr15 35109961 35110283 -50585471 - L1MEd LINE L1 -5172 947 627 378 345 34 19 chr15 35110397 35110606 -50585148 - L1MEd LINE L1 -5664 455 244 271 276 0 26 chr15 35110766 35110842 -50584912 + MER5A DNA MER1_type 86 159 -30 2284 93 0 13 chr15 35110862 35111162 -50584592 + AluSg SINE Alu 1 296 -14 877 183 17 6 chr15 35114937 35115117 -50580637 - MER96B DNA MER1_type? -235 182 1 192 356 114 8 chr15 35115641 35115773 -50579981 - MIR3 SINE MIR -17 191 46 275 122 0 0 chr15 35117062 35117103 -50578651 - MADE1 DNA Mariner 0 80 40 210 271 161 45 chr15 35117103 35117258 -50578496 + MIR SINE MIR 78 250 -12 661 297 46 5 chr15 35118209 35118404 -50577350 - MIR SINE MIR -39 223 21 1992 80 0 19 chr15 35118632 35118895 -50576859 - AluSg SINE Alu -52 258 1 342 247 49 0 chr15 35119366 35119447 -50576307 + MIR SINE MIR 68 152 -56 502 257 7 21 chr15 35119522 35119666 -50576088 - MLT1K LTR MaLR -1 587 446 370 271 69 64 chr15 35120225 35120413 -50575341 - MIR SINE MIR -27 235 47 254 359 127 25 chr15 35121863 35122100 -50573654 - MIR SINE MIR 0 262 2 22 35 0 0 chr15 35122295 35122324 -50573430 + AT_rich Low_complexity Low_complexity 1 29 0 1473 164 65 34 chr15 35122405 35122697 -50573057 - AluJb SINE Alu 0 302 2 288 206 85 109 chr15 35123109 35123274 -50572480 - L1ME3 LINE L1 -1955 5853 5693 2485 85 0 0 chr15 35123290 35123597 -50572157 - AluY SINE Alu -4 307 1 38 39 0 0 chr15 35124503 35124555 -50571199 + AT_rich Low_complexity Low_complexity 1 52 0 1118 164 45 41 chr15 35124758 35124978 -50570776 + MER58A DNA MER1_type 2 222 -2 2318 120 0 0 chr15 35126505 35126814 -50568940 - AluSx SINE Alu -3 309 1 272 267 0 17 chr15 35126819 35126879 -50568875 + MER5A DNA MER1_type 129 187 -2 1760 169 16 22 chr15 35128156 35128470 -50567284 - AluJo SINE Alu 0 312 1 336 306 40 16 chr15 35128491 35128615 -50567139 - L2 LINE L2 -5 3308 3182 238 348 0 25 chr15 35128775 35128893 -50566861 - L2 LINE L2 -213 3059 2945 2179 121 10 0 chr15 35129614 35129919 -50565835 - AluSq SINE Alu -5 308 1 2129 221 46 39 chr15 35129934 35130501 -50565253 - L1MD3 LINE L1 -21 7974 7404 265 139 23 0 chr15 35130510 35130553 -50565201 - L1MD3 LINE L1 -740 7255 7212 383 301 66 36 chr15 35130843 35131009 -50564745 + MIR3 SINE MIR 36 206 -2 198 0 0 0 chr15 35131470 35131492 -50564262 + (T)n Simple_repeat Simple_repeat 1 22 0 2261 114 0 16 chr15 35132048 35132356 -50563398 - AluSx SINE Alu -9 303 1 481 274 58 98 chr15 35132377 35132654 -50563100 - L2 LINE L2 -27 3245 2980 2094 122 3 25 chr15 35132999 35133318 -50562436 - AluSx SINE Alu 0 312 1 2185 173 124 15 chr15 35133525 35133993 -50561761 - Charlie1b DNA MER1_type -4 519 1 217 257 0 43 chr15 35135127 35135181 -50560573 + CT-rich Low_complexity Low_complexity 3 55 -14 2075 127 3 34 chr15 35135181 35135503 -50560251 - AluSx SINE Alu 0 312 1 217 257 0 43 chr15 35135503 35135518 -50560236 + CT-rich Low_complexity Low_complexity 55 69 0 213 39 0 0 chr15 35135520 35135546 -50560208 + (TTTTTA)n Simple_repeat Simple_repeat 5 30 0 399 254 154 30 chr15 35136353 35136522 -50559232 - MIR SINE MIR 0 262 73 807 164 0 57 chr15 35136560 35136700 -50559054 + FLAM_C SINE Alu 2 133 0 328 320 25 25 chr15 35137317 35137439 -50558315 + MIR3 SINE MIR 14 135 -73 1518 199 0 33 chr15 35137442 35137748 -50558006 - AluJb SINE Alu -16 296 1 695 289 101 9 chr15 35138167 35138395 -50557359 + MIR SINE MIR 8 256 -6 182 294 129 73 chr15 35138764 35139050 -50556704 - L2 LINE L2 -21 3251 2950 220 224 86 17 chr15 35139170 35139228 -50556526 + MER5A DNA MER1_type 44 105 -84 1000 142 76 46 chr15 35139303 35139500 -50556254 + AluJb SINE Alu 81 283 -29 749 283 87 4 chr15 35139848 35140078 -50555676 + MIR SINE MIR 4 252 -10 23 0 0 0 chr15 35140108 35140131 -50555623 + AT_rich Low_complexity Low_complexity 1 23 0 690 186 161 0 chr15 35141678 35141839 -50553915 + MER5A DNA MER1_type 3 189 0 307 357 78 13 chr15 35142080 35142234 -50553520 + MIR SINE MIR 20 183 -79 484 316 34 39 chr15 35142475 35142559 -50553195 - MIR SINE MIR -20 242 159 1977 195 95 50 chr15 35142559 35143042 -50552712 + MLT1D LTR MaLR 1 505 0 484 316 34 39 chr15 35143042 35143191 -50552563 - MIR SINE MIR -103 159 10 336 294 54 0 chr15 35144330 35144422 -50551332 - MIR SINE MIR -82 126 30 1796 120 3 95 chr15 35144614 35144930 -50550824 + AluSq SINE Alu 1 287 -26 240 111 0 0 chr15 35144931 35144967 -50550787 + (CA)n Simple_repeat Simple_repeat 2 37 0 353 155 31 10 chr15 35144974 35145071 -50550683 + (TA)n Simple_repeat Simple_repeat 1 99 0 351 0 0 0 chr15 35145650 35145689 -50550065 + (A)n Simple_repeat Simple_repeat 1 39 0 223 345 27 18 chr15 35147275 35147385 -50548369 - MIR3 SINE MIR -31 177 67 416 238 175 25 chr15 35147835 35147995 -50547759 + MER117 DNA MER1_type 10 193 -4 22 0 0 0 chr15 35148099 35148121 -50547633 + AT_rich Low_complexity Low_complexity 1 22 0 417 293 121 6 chr15 35150893 35151067 -50544687 + L2 LINE L2 2565 2758 -556 261 0 0 0 chr15 35151223 35151252 -50544502 + (CA)n Simple_repeat Simple_repeat 1 29 0 360 64 0 0 chr15 35152526 35152573 -50543181 + (TG)n Simple_repeat Simple_repeat 2 48 0 432 214 89 42 chr15 35153590 35153758 -50541996 + MIR SINE MIR 60 235 -27 604 280 135 25 chr15 35154177 35154502 -50541252 - L1MC/D LINE L1 -2108 5700 5340 1061 256 137 28 chr15 35154507 35154902 -50540852 + LTR16A LTR ERVL 3 440 -10 519 311 106 43 chr15 35154919 35156535 -50539219 - L1MC/D LINE L1 -818 5328 3611 237 306 41 20 chr15 35158541 35158639 -50537115 - L2 LINE L2 -190 3082 2983 339 214 56 48 chr15 35159743 35159861 -50535893 - MER103 DNA DNA -2 164 43 2447 48 3 0 chr15 35159861 35160155 -50535599 - AluY SINE Alu -16 295 1 36 0 0 0 chr15 35160162 35160198 -50535556 + AT_rich Low_complexity Low_complexity 1 36 0 759 22 0 0 chr15 35161913 35162002 -50533752 + (TTTC)n Simple_repeat Simple_repeat 3 91 0 180 0 0 0 chr15 35163420 35163440 -50532314 + (T)n Simple_repeat Simple_repeat 1 20 0 1687 152 0 79 chr15 35163655 35163985 -50531769 - AluSx SINE Alu 0 312 9 278 267 223 44 chr15 35164472 35164678 -50531076 - MIR SINE MIR 0 262 20 207 139 0 0 chr15 35166974 35167010 -50528744 + (GGGA)n Simple_repeat Simple_repeat 3 38 0 281 289 82 22 chr15 35167126 35167265 -50528489 - MIR3 SINE MIR -93 115 3 243 236 0 0 chr15 35167345 35167400 -50528354 + MIR SINE MIR 183 237 -25 431 299 65 15 chr15 35168279 35168480 -50527274 - MIR SINE MIR -3 259 49 196 273 91 26 chr15 35168635 35168712 -50527042 + MIR3 SINE MIR 109 190 -18 1745 167 10 7 chr15 35169410 35169710 -50526044 - L1MB5 LINE L1 -17 6157 5857 22 35 0 0 chr15 35169982 35170011 -50525743 + AT_rich Low_complexity Low_complexity 1 29 0 303 146 0 0 chr15 35170778 35170833 -50524921 + (CA)n Simple_repeat Simple_repeat 2 56 0 272 294 0 0 chr15 35172250 35172318 -50523436 + MIR SINE MIR 87 154 -108 1256 155 79 49 chr15 35172508 35172812 -50522942 + L1MA9 LINE L1 5996 6308 -4 318 262 35 48 chr15 35174150 35174295 -50521459 - MIR3 SINE MIR -5 203 61 651 182 0 91 chr15 35175275 35175451 -50520303 + MER5B DNA MER1_type 3 162 -16 273 239 64 55 chr15 35176309 35176418 -50519336 + MIR SINE MIR 39 148 -114 439 290 32 0 chr15 35176504 35176628 -50519126 + MIR3 SINE MIR 56 183 -25 377 269 23 31 chr15 35177725 35177855 -50517899 + MIR SINE MIR 60 188 -74 2409 87 0 7 chr15 35177869 35178178 -50517576 + AluSx SINE Alu 1 307 -5 2349 89 0 7 chr15 35178300 35178602 -50517152 - AluY SINE Alu -11 300 1 2429 80 0 7 chr15 35179138 35179440 -50516314 - AluY SINE Alu -11 300 1 201 229 0 0 chr15 35179540 35179588 -50516166 - MER5B DNA MER1_type -80 98 51 505 256 8 0 chr15 35179590 35179707 -50516047 - L1ME3 LINE L1 -3 6159 6042 305 143 107 0 chr15 35179709 35179765 -50515989 + MER5B DNA MER1_type 115 176 -2 182 289 39 0 chr15 35179974 35180026 -50515728 + L2 LINE L2 3128 3181 -91 539 246 0 0 chr15 35180269 35180383 -50515371 + FLAM_C SINE Alu 21 134 -9 434 157 0 11 chr15 35180385 35180474 -50515280 + (TA)n Simple_repeat Simple_repeat 1 88 0 998 195 5 5 chr15 35180479 35180664 -50515090 + AluSg/x SINE Alu 119 303 -7 329 344 89 0 chr15 35181704 35181861 -50513893 + L2 LINE L2 3102 3272 0 334 343 47 18 chr15 35183002 35183171 -50512583 - MIR3 SINE MIR -15 193 20 189 107 0 0 chr15 35186159 35186187 -50509567 + (TG)n Simple_repeat Simple_repeat 2 29 0 304 301 0 0 chr15 35187139 35187232 -50508522 + MIR SINE MIR 170 262 0 181 308 37 28 chr15 35187323 35187430 -50508324 + L2 LINE L2 2948 3055 -217 685 266 174 14 chr15 35187519 35187794 -50507960 - MER5C DNA MER1_type 0 324 6 211 164 33 0 chr15 35187920 35187981 -50507773 + (TGAA)n Simple_repeat Simple_repeat 1 63 0 232 263 40 10 chr15 35189040 35189139 -50506615 - L2 LINE L2 -214 3058 2957 2833 157 24 22 chr15 35189162 35189450 -50506304 - Tigger3b DNA MER2_type -2529 499 208 2194 103 7 0 chr15 35189450 35189741 -50506013 - AluSc SINE Alu -16 293 1 2833 157 24 22 chr15 35189741 35189950 -50505804 - Tigger3b DNA MER2_type -2820 208 1 582 252 32 7 chr15 35190024 35190179 -50505575 - MIR SINE MIR -102 160 2 505 241 9 0 chr15 35190473 35190589 -50505165 - L2 LINE L2 -1 3312 3196 2088 132 3 0 chr15 35190652 35190941 -50504813 - AluSc SINE Alu -19 290 1 975 204 60 23 chr15 35191236 35191452 -50504302 - MER58A DNA MER1_type 0 224 1 224 300 107 27 chr15 35191710 35191860 -50503894 + L3b LINE CR1 1301 1462 -121 230 321 146 6 chr15 35194030 35194195 -50501559 - MIR SINE MIR -74 188 1 23 33 0 0 chr15 35194463 35194493 -50501261 + AT_rich Low_complexity Low_complexity 1 30 0 456 270 121 51 chr15 35194527 35194749 -50501005 - L2 LINE L2 -77 3236 3031 1799 124 110 58 chr15 35194749 35195095 -50500659 - THE1B LTR MaLR 0 364 1 456 270 121 51 chr15 35195095 35195321 -50500433 - L2 LINE L2 -282 3031 2756 185 143 29 0 chr15 35196832 35196867 -50498887 + L2 LINE L2 3265 3300 -13 228 316 113 39 chr15 35198006 35198237 -50497517 + L2 LINE L2 2565 2812 -502 278 351 117 52 chr15 35198330 35198655 -50497099 + L2 LINE L2 2853 3198 -74 2253 115 3 3 chr15 35199438 35199750 -50496004 + AluSx SINE Alu 1 312 0 1686 176 24 14 chr15 35201221 35201517 -50494237 + AluJo SINE Alu 1 299 -13 822 171 11 4 chr15 35201529 35201795 -50493959 + GA-rich Low_complexity Low_complexity 1 268 0 307 118 0 20 chr15 35201797 35201848 -50493906 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 219 330 60 10 chr15 35201877 35201977 -50493777 + MIR SINE MIR 38 142 -66 391 252 114 23 chr15 35202240 35202371 -50493383 - L2 LINE L2 0 3313 3171 187 262 33 16 chr15 35202874 35202935 -50492819 + L2 LINE L2 3201 3262 -10 227 153 85 51 chr15 35203247 35203306 -50492448 + MIR SINE MIR 120 180 -82 21 0 0 0 chr15 35204510 35204531 -50491223 + AT_rich Low_complexity Low_complexity 1 21 0 226 303 15 0 chr15 35204788 35204854 -50490900 - L2 LINE L2 -4 3309 3243 244 287 53 11 chr15 35205079 35205173 -50490581 + L2 LINE L2 3160 3257 -15 246 323 52 39 chr15 35209528 35209683 -50486071 - MIR3 SINE MIR -6 202 46 256 273 0 0 chr15 35210389 35210444 -50485310 + (TATG)n Simple_repeat Simple_repeat 4 58 0 249 276 48 38 chr15 35211222 35211327 -50484427 - MIR SINE MIR -68 140 35 257 224 0 0 chr15 35211488 35211546 -50484208 + (CA)n Simple_repeat Simple_repeat 2 59 0 817 190 5 54 chr15 35212620 35212675 -50483079 - MER58A DNA MER1_type -2209 211 155 1541 173 60 0 chr15 35212675 35212967 -50482787 - AluJo SINE Alu 0 308 1 817 190 5 54 chr15 35212967 35213094 -50482660 - MER58A DNA MER1_type -2265 155 37 814 215 21 5 chr15 35214237 35214423 -50481331 + MER5A DNA MER1_type 1 189 0 251 285 153 0 chr15 35214444 35214581 -50481173 - MIR3 SINE MIR -48 160 3 662 204 90 114 chr15 35217193 35217349 -50478405 + MER8 DNA MER2_type 1 150 -89 2280 113 0 0 chr15 35217349 35217651 -50478103 - AluSq SINE Alu -11 302 1 662 204 90 114 chr15 35217651 35217739 -50478015 + MER8 DNA MER2_type 150 239 0 180 224 47 71 chr15 35217768 35217853 -50477901 - MIR SINE MIR -51 211 129 2418 90 0 3 chr15 35218022 35218332 -50477422 - AluY SINE Alu -2 309 1 287 263 90 60 chr15 35219364 35219497 -50476257 - L2 LINE L2 0 3272 3136 435 273 101 19 chr15 35219831 35220040 -50475714 - MIR SINE MIR -25 237 12 191 273 76 15 chr15 35220125 35220191 -50475563 + L2 LINE L2 3238 3307 -6 211 374 54 12 chr15 35220844 35221010 -50474744 + MIR SINE MIR 72 244 -18 321 197 0 0 chr15 35221025 35221091 -50474663 + (TAGG)n Simple_repeat Simple_repeat 2 67 0 341 305 66 23 chr15 35221184 35221355 -50474399 + MIR SINE MIR 38 214 -48 2031 113 43 7 chr15 35221359 35221485 -50474269 + AluSx SINE Alu 1 121 -191 387 0 0 0 chr15 35221485 35221528 -50474226 + (CA)n Simple_repeat Simple_repeat 2 44 0 2031 113 43 7 chr15 35221528 35221683 -50474071 + AluSx SINE Alu 121 292 -20 196 268 36 0 chr15 35221701 35221757 -50473997 + MIR SINE MIR 203 260 -2 750 220 75 6 chr15 35223556 35223729 -50472025 + MER5A DNA MER1_type 3 187 -2 300 202 30 97 chr15 35224118 35224244 -50471510 + MIR SINE MIR 43 163 -63 470 241 62 0 chr15 35224592 35224704 -50471050 - MER119 DNA MER1_type -3 580 462 2210 117 0 0 chr15 35224755 35225053 -50470701 - AluSx SINE Alu -14 298 1 245 227 0 0 chr15 35225061 35225105 -50470649 - MER119 DNA MER1_type -500 83 40 311 242 0 33 chr15 35226936 35227027 -50468727 - MIR SINE MIR -3 259 172 23 33 0 0 chr15 35228291 35228321 -50467433 + AT_rich Low_complexity Low_complexity 1 30 0 386 331 16 8 chr15 35228857 35228978 -50466776 + MIR SINE MIR 20 141 -121 254 278 0 0 chr15 35229025 35229079 -50466675 + L2 LINE L2 3217 3270 -2 257 49 73 0 chr15 35229892 35229933 -50465821 + T-rich Low_complexity Low_complexity 2 45 0 284 327 85 20 chr15 35231962 35232115 -50463639 + MIR SINE MIR 41 203 -59 2212 118 20 0 chr15 35232251 35232548 -50463206 + AluSg SINE Alu 1 303 -7 243 0 0 0 chr15 35232748 35232775 -50462979 + (T)n Simple_repeat Simple_repeat 1 27 0 2348 90 3 10 chr15 35232927 35233237 -50462517 + AluSp SINE Alu 1 308 -5 275 125 0 0 chr15 35234526 35234566 -50461188 - L2 LINE L2 -219 3053 3014 321 316 71 13 chr15 35235018 35235173 -50460581 + MER5A DNA MER1_type 26 189 0 249 308 35 71 chr15 35235597 35235766 -50459988 - MIR3 SINE MIR -14 194 32 368 304 137 25 chr15 35235891 35236095 -50459659 - MIR SINE MIR -2 260 34 251 280 32 32 chr15 35237063 35237220 -50458534 + L2 LINE L2 2928 3084 -188 2277 97 0 0 chr15 35237583 35237873 -50457881 - AluSx SINE Alu -22 290 1 206 176 0 0 chr15 35237875 35237909 -50457845 - MIR SINE MIR -7 255 222 2070 99 3 0 chr15 35238254 35238586 -50457168 - AluY SINE Alu 0 333 1 1487 116 70 0 chr15 35238697 35238912 -50456842 - MER30 DNA MER1_type 0 230 1 1152 35 0 0 chr15 35239606 35239747 -50456007 + (TTC)n Simple_repeat Simple_repeat 1 141 0 240 358 33 25 chr15 35240753 35240873 -50454881 - L2 LINE L2 -6 3266 3146 426 260 99 42 chr15 35243235 35243427 -50452327 + MIR SINE MIR 11 213 -49 2073 127 0 40 chr15 35244515 35244838 -50450916 + AluJb SINE Alu 1 310 -2 351 0 0 0 chr15 35245787 35245826 -50449928 + (TA)n Simple_repeat Simple_repeat 2 40 0 269 303 341 0 chr15 35246711 35246843 -50448911 - MER91A DNA MER1_type -12 184 8 613 241 134 31 chr15 35248719 35248943 -50446811 + MIR SINE MIR 2 248 -14 793 240 39 5 chr15 35249362 35249566 -50446188 - MER58A DNA MER1_type -13 211 1 333 167 0 125 chr15 35249656 35249715 -50446039 - MER103 DNA DNA -60 106 62 2297 113 0 3 chr15 35249715 35250024 -50445730 + AluSg SINE Alu 1 308 -2 333 167 0 125 chr15 35250024 35250060 -50445694 - MER103 DNA DNA -104 62 23 243 0 0 0 chr15 35252048 35252075 -50443679 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 2525 88 12 9 chr15 35254256 35254599 -50441155 - THE1B LTR MaLR -20 344 1 354 239 0 0 chr15 35254727 35254794 -50440960 - L2 LINE L2 0 3313 3247 553 204 183 7 chr15 35254794 35254931 -50440823 - MER5A DNA MER1_type 0 189 29 1026 213 80 37 chr15 35254966 35255296 -50440458 - MER33 DNA MER1_type 0 324 1 421 307 17 28 chr15 35256411 35256587 -50439167 + MIR SINE MIR 39 212 -50 264 77 0 0 chr15 35257254 35257293 -50438461 + (TG)n Simple_repeat Simple_repeat 2 40 0 488 202 160 34 chr15 35257309 35257428 -50438326 - MER94 DNA DNA 0 134 1 731 286 62 4 chr15 35257619 35257860 -50437894 + MIR SINE MIR 8 262 0 305 274 71 0 chr15 35257859 35257943 -50437811 + MIR SINE MIR 55 144 -64 * 931 157 7 0 chr15 35257949 35258126 -50437628 + FRAM SINE Alu 1 176 0 199 396 21 0 chr15 35258147 35258243 -50437511 + MIR SINE MIR 159 256 -6 209 200 22 0 chr15 35258245 35258290 -50437464 + CT-rich Low_complexity Low_complexity 2 47 0 308 330 80 0 chr15 35258954 35259066 -50436688 - L2 LINE L2 -1 3271 3151 441 0 0 0 chr15 35259509 35259558 -50436196 + (TA)n Simple_repeat Simple_repeat 2 50 0 556 282 34 13 chr15 35259742 35259891 -50435863 + MER5A DNA MER1_type 35 186 -3 1971 97 4 8 chr15 35259908 35260166 -50435588 - AluSg SINE Alu -11 299 43 249 61 0 0 chr15 35260167 35260200 -50435554 - Alu SINE Alu -230 71 39 377 276 62 24 chr15 35260737 35260900 -50434854 + MIR3 SINE MIR 2 173 -35 477 284 37 122 chr15 35261781 35262052 -50433702 + L2 LINE L2 3024 3271 -1 702 254 149 0 chr15 35262417 35262645 -50433109 - MIR SINE MIR 0 262 1 303 277 106 11 chr15 35262659 35262753 -50433001 + MER5A DNA MER1_type 2 104 -85 260 265 137 10 chr15 35262691 35262793 -50432961 - MER5A DNA MER1_type -22 167 53 * 198 0 0 0 chr15 35264860 35264882 -50430872 + (T)n Simple_repeat Simple_repeat 1 22 0 873 190 0 11 chr15 35265574 35265758 -50429996 - MER33 DNA MER1_type 0 363 182 786 189 8 0 chr15 35265758 35265880 -50429874 - FLAM_A SINE Alu -17 125 3 784 211 13 0 chr15 35265882 35266034 -50429720 - MER33 DNA MER1_type -170 154 1 543 285 64 0 chr15 35266600 35266772 -50428982 + MIR SINE MIR 79 261 -1 225 279 16 0 chr15 35268708 35268769 -50426985 + (CATATA)n Simple_repeat Simple_repeat 6 67 0 214 338 99 13 chr15 35268986 35269137 -50426617 + L2 LINE L2 1207 1370 -1944 1551 246 67 0 chr15 35269249 35269652 -50426102 - L1MC4 LINE L1 -142 7900 7471 553 325 96 48 chr15 35269756 35270360 -50425394 + L2 LINE L2 2226 2858 -456 1610 162 78 90 chr15 35270534 35270973 -50424781 - L1MB7 LINE L1 -28 6156 5724 569 265 15 8 chr15 35271130 35271262 -50424492 + L2 LINE L2 3140 3272 0 380 325 18 30 chr15 35271719 35271888 -50423866 - MIR SINE MIR -3 259 93 428 313 142 8 chr15 35272053 35272268 -50423486 + MIR SINE MIR 9 244 -18 209 345 24 12 chr15 35272516 35272600 -50423154 - L2 LINE L2 -76 3196 3112 1669 164 3 59 chr15 35274789 35274931 -50420823 + AluJo SINE Alu 1 149 -163 2076 131 3 7 chr15 35274931 35275229 -50420525 + AluSx SINE Alu 1 297 -15 1669 164 3 59 chr15 35275229 35275410 -50420344 + AluJo SINE Alu 149 306 -6 2466 130 8 8 chr15 35276103 35276458 -50419296 + THE1A LTR MaLR 1 355 0 2353 91 0 10 chr15 35276469 35276778 -50418976 - AluSx SINE Alu -6 306 1 454 342 10 20 chr15 35277405 35277607 -50418147 - MIR SINE MIR -50 212 13 333 257 177 0 chr15 35277845 35277958 -50417796 - MER94 DNA DNA 0 134 2 495 284 27 44 chr15 35278099 35278282 -50417472 + MIR SINE MIR 82 261 -1 272 232 81 30 chr15 35278682 35278781 -50416973 + MLT1L LTR MaLR 508 611 -4 219 306 32 48 chr15 35279186 35279310 -50416444 - MIR SINE MIR -65 143 22 198 309 0 0 chr15 35279613 35279668 -50416086 - L2 LINE L2 -1003 2311 2257 283 315 6 37 chr15 35280975 35281137 -50414617 + (CATA)n Simple_repeat Simple_repeat 1 157 0 206 178 0 22 chr15 35282619 35282664 -50413090 + (TAA)n Simple_repeat Simple_repeat 3 46 0 604 336 8 25 chr15 35283366 35283618 -50412136 - MIR SINE MIR -2 260 20 465 327 79 18 chr15 35283632 35283910 -50411844 - L3 LINE CR1 -351 1226 932 349 299 104 18 chr15 35283973 35284137 -50411617 + MIR SINE MIR 84 261 -1 24 53 0 0 chr15 35284220 35284258 -50411496 + AT_rich Low_complexity Low_complexity 1 38 0 187 317 150 33 chr15 35285112 35285232 -50410522 + L3 LINE CR1 693 826 -751 483 245 42 33 chr15 35285346 35285529 -50410225 - MIR SINE MIR -19 243 62 2425 69 3 0 chr15 35285599 35285902 -50409852 + AluY SINE Alu 1 304 -7 1035 189 87 5 chr15 35286273 35286469 -50409285 - MER58A DNA MER1_type 0 224 13 313 295 0 9 chr15 35286471 35286586 -50409168 - MIR SINE MIR -65 143 50 2041 139 0 7 chr15 35286731 35287025 -50408729 + AluJb SINE Alu 1 292 -20 616 296 14 19 chr15 35287721 35287937 -50407817 + MIR SINE MIR 46 260 -2 261 244 11 44 chr15 35288361 35288451 -50407303 - MIR SINE MIR -85 123 37 192 290 140 45 chr15 35289880 35290101 -50405653 - L2 LINE L2 -219 3053 2812 505 262 16 0 chr15 35292032 35292158 -50403596 - MER94 DNA DNA -3 131 4 8999 201 40 35 chr15 35292537 35293211 -50402543 - L1MB7 LINE L1 -16 6666 5997 363 98 0 0 chr15 35293211 35293272 -50402482 + (CAT)n Simple_repeat Simple_repeat 3 63 0 8999 201 40 35 chr15 35293272 35294041 -50401713 - L1MB7 LINE L1 -685 5997 5233 2391 83 0 10 chr15 35294041 35294343 -50401411 - AluY SINE Alu -12 299 1 8999 201 40 35 chr15 35294343 35294796 -50400958 - L1MB7 LINE L1 -1449 5233 4784 282 116 0 0 chr15 35294796 35294839 -50400915 + (TG)n Simple_repeat Simple_repeat 2 44 0 8999 201 40 35 chr15 35294839 35296061 -50399693 - L1MB7 LINE L1 -1898 4784 3531 6042 217 50 30 chr15 35296055 35297993 -50397761 - L1MB7 LINE L1 -4660 1986 2 * 5891 124 25 34 chr15 35298125 35299036 -50396718 + MER4D LTR ERV1 1 903 0 205 207 0 17 chr15 35299487 35299545 -50396209 + (TTA)n Simple_repeat Simple_repeat 2 58 0 803 221 52 102 chr15 35299684 35300009 -50395745 + MER5C DNA MER1_type 1 309 -15 2315 94 10 0 chr15 35300664 35300961 -50394793 - AluSc SINE Alu -9 300 1 1723 120 0 0 chr15 35301212 35301445 -50394309 - AluSg/x SINE Alu -9 301 69 344 297 138 4 chr15 35302799 35303000 -50392754 - MIR SINE MIR -12 250 22 294 265 131 46 chr15 35304090 35304140 -50391614 - MIR SINE MIR -68 140 96 2820 197 26 0 chr15 35304140 35304669 -50391085 - L1MB5 LINE L1 -8 6166 5624 294 265 131 46 chr15 35304669 35304792 -50390962 - MIR SINE MIR -112 96 16 246 62 0 0 chr15 35306348 35306380 -50389374 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 378 280 142 60 chr15 35306541 35306695 -50389059 + L1ME4a LINE L1 5579 5719 -402 1426 181 24 55 chr15 35306695 35307027 -50388727 + AluJo SINE Alu 1 323 0 378 280 142 60 chr15 35307027 35307153 -50388601 + L1ME4a LINE L1 5719 5883 -238 302 301 55 48 chr15 35308279 35308425 -50387329 - MIR SINE MIR -12 250 104 2259 107 0 19 chr15 35308437 35308747 -50387007 + AluSx SINE Alu 1 304 -8 1422 118 9 5 chr15 35311145 35311356 -50384398 - AluSg/x SINE Alu -6 306 95 398 191 52 78 chr15 35311665 35311780 -50383974 + MARNA DNA Mariner 258 369 -217 281 244 12 61 chr15 35313468 35313550 -50382204 + L2 LINE L2 3187 3264 -8 400 286 48 0 chr15 35313616 35313742 -50382012 - MIR SINE MIR -3 259 128 836 169 24 24 chr15 35313742 35313908 -50381846 - MLT1B LTR MaLR -29 361 196 533 241 59 29 chr15 35313970 35314140 -50381614 - MLT1B LTR MaLR -199 175 1 204 289 0 0 chr15 35314143 35314195 -50381559 - MIR SINE MIR -161 101 50 364 191 0 0 chr15 35314484 35314547 -50381207 + MER5B DNA MER1_type 2 64 -114 335 194 233 0 chr15 35314548 35314651 -50381103 + L1MC4 LINE L1 6947 7073 -969 2376 223 95 10 chr15 35314657 35315277 -50380477 + L1MC4 LINE L1 7230 7902 -140 241 192 39 0 chr15 35315284 35315336 -50380418 + L1MC4 LINE L1 7989 8042 0 461 256 17 8 chr15 35315345 35315462 -50380292 + MER5B DNA MER1_type 51 168 -10 818 228 70 0 chr15 35315476 35315647 -50380107 + MER5A DNA MER1_type 7 189 0 320 260 170 0 chr15 35317366 35317466 -50378288 - L2 LINE L2 0 3272 3156 1511 171 51 81 chr15 35317602 35318038 -50377716 + MLT1B LTR MaLR 1 390 0 229 286 18 0 chr15 35318862 35318918 -50376836 + L2 LINE L2 3204 3260 -12 386 300 58 8 chr15 35319767 35319903 -50375851 + MIR SINE MIR 30 170 -57 363 264 169 60 chr15 35320685 35320886 -50374868 + MIR SINE MIR 13 235 -27 181 329 27 0 chr15 35322820 35322893 -50372861 - L2 LINE L2 -208 3064 2990 669 222 83 17 chr15 35322927 35323107 -50372647 + MIR SINE MIR 17 208 -54 181 314 0 0 chr15 35323735 35323786 -50371968 - L3 LINE CR1 -1 1576 1526 183 42 0 0 chr15 35324114 35324138 -50371616 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 466 252 39 0 chr15 35325315 35325418 -50370336 + MIR SINE MIR 79 185 -77 355 302 279 16 chr15 35326184 35326442 -50369312 + L2 LINE L2 2942 3267 -5 261 237 0 17 chr15 35326803 35326862 -50368892 + L2 LINE L2 3187 3244 -28 186 43 0 0 chr15 35326876 35326899 -50368855 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 273 350 28 33 chr15 35326925 35327105 -50368649 - MIR SINE MIR -70 192 14 490 327 64 28 chr15 35327210 35327461 -50368293 - MIR SINE MIR 0 262 3 498 223 45 0 chr15 35327533 35327645 -50368109 + MIR SINE MIR 86 202 -60 1505 71 20 0 chr15 35328457 35328655 -50367099 + AluY SINE Alu 93 294 -17 243 0 0 0 chr15 35328774 35328801 -50366953 + (TG)n Simple_repeat Simple_repeat 2 28 0 258 386 30 8 chr15 35328983 35329115 -50366639 - MIR3 SINE MIR -7 201 67 24 0 0 0 chr15 35329238 35329262 -50366492 + AT_rich Low_complexity Low_complexity 1 24 0 1142 173 19 42 chr15 35329903 35330117 -50365637 - AluJo SINE Alu -17 295 87 2217 113 0 3 chr15 35330129 35330429 -50365325 - AluSx SINE Alu -9 303 5 181 292 0 0 chr15 35330779 35330827 -50364927 - L3 LINE CR1 -2 1575 1528 468 317 40 15 chr15 35331063 35331262 -50364492 - L3 LINE CR1 -129 1448 1245 221 260 20 0 chr15 35333019 35333069 -50362685 + MIR SINE MIR 22 72 -136 217 236 18 18 chr15 35333431 35333486 -50362268 - MIR SINE MIR -108 154 100 209 284 71 71 chr15 35335209 35335336 -50360418 - MIR SINE MIR -73 189 63 369 0 0 0 chr15 35336046 35336087 -50359667 + (CA)n Simple_repeat Simple_repeat 2 42 0 1422 162 56 212 chr15 35336094 35337057 -50358697 - Charlie2 DNA MER1_type -37 2825 2013 839 274 62 49 chr15 35337067 35337435 -50358319 - Charlie2 DNA MER1_type -2489 373 1 258 257 20 81 chr15 35337940 35338024 -50357730 - L1ME4a LINE L1 -1 6120 6046 2300 79 0 0 chr15 35338024 35338344 -50357410 + AluSc SINE Alu 1 320 0 258 257 20 81 chr15 35338344 35338406 -50357348 - L1ME4a LINE L1 -75 6046 5982 357 257 9 35 chr15 35338525 35338638 -50357116 + MIR SINE MIR 109 218 -44 208 204 74 0 chr15 35338645 35338699 -50357055 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 2153 130 0 0 chr15 35338794 35339093 -50356661 - AluSx SINE Alu -13 299 1 931 269 133 18 chr15 35339093 35339491 -50356263 - L1ME4a LINE L1 -294 5827 5384 295 60 40 0 chr15 35339992 35340042 -50355712 + (TC)n Simple_repeat Simple_repeat 1 52 0 208 229 0 0 chr15 35340315 35340363 -50355391 + GA-rich Low_complexity Low_complexity 2 49 0 2054 96 26 42 chr15 35341127 35341439 -50354315 - AluY SINE Alu -4 307 1 440 311 118 30 chr15 35342366 35342697 -50353057 + L2 LINE L2 2952 3311 -2 216 320 74 33 chr15 35342695 35342817 -50352937 + MIR SINE MIR 63 189 -73 * 494 333 34 6 chr15 35343313 35343490 -50352264 - MIR3 SINE MIR -15 193 12 198 308 27 62 chr15 35343572 35343718 -50352036 - L3b LINE CR1 -320 1263 1123 1328 191 93 18 chr15 35395356 35395527 -50300227 - AluJo SINE Alu -13 299 98 396 0 0 0 chr15 35395527 35395571 -50300183 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1328 191 93 18 chr15 35395571 35395677 -50300077 - AluJo SINE Alu -214 98 1 266 284 10 29 chr15 35397179 35397281 -50298473 - MIR SINE MIR -117 145 46 531 231 210 31 chr15 35397521 35397716 -50298038 + MIR SINE MIR 32 261 -1 21 0 0 0 chr15 35399240 35399261 -50296493 + AT_rich Low_complexity Low_complexity 1 21 0 192 200 0 0 chr15 35399610 35399650 -50296104 - L2 LINE L2 0 3272 3233 503 186 26 9 chr15 35399653 35399766 -50295988 + MIR SINE MIR 125 239 -23 552 136 0 0 chr15 35399993 35400074 -50295680 + MER5A DNA MER1_type 1 81 -108 586 206 0 40 chr15 35400089 35400249 -50295505 + FLAM_C SINE Alu 13 167 0 494 179 8 119 chr15 35400249 35400383 -50295371 + MER5A DNA MER1_type 71 189 0 198 333 89 33 chr15 35401238 35401451 -50294303 - L2 LINE L2 -223 3049 2825 196 308 47 28 chr15 35401586 35401693 -50294061 - MIR SINE MIR -129 133 25 956 184 11 5 chr15 35404555 35404740 -50291014 - MER3 DNA MER1_type -8 201 16 356 273 7 58 chr15 35404828 35404967 -50290787 + MER5A DNA MER1_type 52 183 -6 186 189 0 0 chr15 35405751 35405788 -50289966 + A-rich Low_complexity Low_complexity 1 37 0 485 310 8 0 chr15 35405976 35406105 -50289649 + MIR3 SINE MIR 58 187 -21 204 305 221 0 chr15 35406746 35406877 -50288877 + MIR3 SINE MIR 14 173 -35 2081 120 0 4 chr15 35406912 35407216 -50288538 - AluSx SINE Alu 0 311 9 26 50 0 0 chr15 35407648 35407688 -50288066 + AT_rich Low_complexity Low_complexity 1 40 0 474 297 141 15 chr15 35407735 35408190 -50287564 - L1ME4a LINE L1 -58 6063 5552 181 322 11 33 chr15 35408852 35408942 -50286812 - L2 LINE L2 -3 3310 3223 231 326 12 12 chr15 35408953 35409039 -50286715 - MIR3 SINE MIR -21 187 102 459 0 0 0 chr15 35409570 35409621 -50286133 + (TTTTA)n Simple_repeat Simple_repeat 4 54 0 2244 119 0 0 chr15 35409623 35409918 -50285836 - AluSx SINE Alu -17 295 1 180 217 22 0 chr15 35410096 35410142 -50285612 - MIR SINE MIR -130 132 86 317 238 24 24 chr15 35411281 35411365 -50284389 - L2 LINE L2 -1 3271 3188 443 228 108 80 chr15 35412094 35412222 -50283532 + L1MC5 LINE L1 7537 7660 -301 2115 131 65 0 chr15 35412222 35412573 -50283181 - L1MC1 LINE L1 0 6333 5960 443 228 108 80 chr15 35412573 35412843 -50282911 + L1MC5 LINE L1 7660 7946 -15 438 271 79 17 chr15 35412843 35413020 -50282734 - MIR SINE MIR -25 237 50 2063 260 42 2 chr15 35413027 35413573 -50282181 - L1ME3A LINE L1 0 6170 5603 243 122 0 0 chr15 35414475 35414524 -50281230 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 272 275 1 38 chr15 35415289 35415410 -50280344 + MIR SINE MIR 30 148 -60 416 226 8 83 chr15 35416540 35416673 -50279081 + MIR SINE MIR 70 192 -70 437 168 17 173 chr15 35417944 35418117 -50277637 - MER5B DNA MER1_type -8 170 25 530 261 136 10 chr15 35418768 35418967 -50276787 - MIR SINE MIR -20 242 19 879 203 21 31 chr15 35419011 35419203 -50276551 - MER3 DNA MER1_type -3 206 17 240 219 55 0 chr15 35419214 35419287 -50276467 - MIR3 SINE MIR -41 167 91 189 365 10 10 chr15 35419587 35419683 -50276071 + MIR SINE MIR 20 115 -147 279 315 45 0 chr15 35419832 35419921 -50275833 - L2 LINE L2 0 3313 3221 218 307 105 0 chr15 35420360 35420474 -50275280 - L2 LINE L2 -35 3237 3112 404 234 22 73 chr15 35421417 35421554 -50274200 + L1MB7 LINE L1 6055 6184 0 2294 98 0 0 chr15 35421619 35421948 -50273806 - AluY SINE Alu 0 330 2 1538 173 3 53 chr15 35421961 35422293 -50273461 - AluJo SINE Alu 0 317 1 1698 144 32 58 chr15 35422412 35422725 -50273029 + AluSx SINE Alu 1 305 -7 1657 133 24 109 chr15 35423187 35423526 -50272228 + AluYb8 SINE Alu 1 310 -8 327 312 84 26 chr15 35423727 35423881 -50271873 + MIR SINE MIR 34 196 -66 180 287 76 89 chr15 35424672 35424829 -50270925 + MIR3 SINE MIR 15 169 -39 209 114 45 23 chr15 35425529 35425573 -50270181 + A-rich Low_complexity Low_complexity 4 48 0 360 296 77 18 chr15 35426891 35427060 -50268694 - MIR3 SINE MIR -14 194 16 292 296 0 0 chr15 35427194 35427265 -50268489 + MIR SINE MIR 80 150 -112 215 158 0 35 chr15 35427267 35427324 -50268430 + (ATG)n Simple_repeat Simple_repeat 2 56 0 576 260 48 62 chr15 35427334 35427561 -50268193 + MIR SINE MIR 10 233 -29 546 253 136 0 chr15 35431605 35431759 -50263995 - MER63A DNA MER1_type -27 183 9 21 36 0 0 chr15 35432122 35432150 -50263604 + AT_rich Low_complexity Low_complexity 1 28 0 2384 231 24 0 chr15 35432403 35432897 -50262857 + MER119 DNA MER1_type 5 510 -73 1998 77 0 18 chr15 35433056 35433403 -50262351 + AluY SINE Alu 1 342 0 36 0 0 0 chr15 35434967 35435003 -50260751 + AT_rich Low_complexity Low_complexity 1 36 0 212 83 83 0 chr15 35436086 35436122 -50259632 + T-rich Low_complexity Low_complexity 2 40 0 424 220 0 11 chr15 35436473 35436564 -50259190 + MER97a DNA MER1_type? 82 171 -723 237 233 0 58 chr15 35437135 35437238 -50258516 - L1M LINE L1 -2443 5365 5269 33 73 0 0 chr15 35437497 35437565 -50258189 + AT_rich Low_complexity Low_complexity 1 68 0 231 345 56 49 chr15 35438901 35439043 -50256711 + L2 LINE L2 2875 3017 -255 466 289 57 6 chr15 35439115 35439274 -50256480 + MER91A DNA MER1_type 6 172 -24 245 286 57 67 chr15 35439400 35439505 -50256249 + L2 LINE L2 3169 3272 0 549 292 62 0 chr15 35440278 35440456 -50255298 + MIR SINE MIR 3 191 -71 2281 77 0 20 chr15 35440458 35440758 -50254996 - AluSx SINE Alu -18 294 1 187 309 144 0 chr15 35440871 35440968 -50254786 + MIR SINE MIR 146 256 -6 333 0 0 0 chr15 35441353 35441390 -50254364 + (CA)n Simple_repeat Simple_repeat 2 38 0 221 136 0 23 chr15 35442086 35442130 -50253624 + (GAAA)n Simple_repeat Simple_repeat 1 43 0 1704 139 0 15 chr15 35443960 35444227 -50251527 + AluSx SINE Alu 39 301 -11 544 243 129 0 chr15 35444314 35444454 -50251300 + MIR3 SINE MIR 37 194 -14 313 292 105 36 chr15 35444483 35444702 -50251052 + L1ME4a LINE L1 5683 5916 -246 373 250 0 9 chr15 35444727 35444835 -50250919 + L1ME4a LINE L1 5962 6068 -53 23 68 0 0 chr15 35444847 35444891 -50250863 + AT_rich Low_complexity Low_complexity 1 44 0 511 299 43 12 chr15 35445490 35445654 -50250100 + MIR SINE MIR 20 188 -74 939 231 51 65 chr15 35445962 35446531 -50249223 + MLT1C LTR MaLR 1 626 0 681 273 77 47 chr15 35446611 35447066 -50248688 + MLT1J LTR MaLR 15 446 0 264 361 62 7 chr15 35447095 35447239 -50248515 - MIR3 SINE MIR -6 202 51 769 306 140 11 chr15 35447361 35447904 -50247850 + L2 LINE L2 2684 3307 -6 628 237 56 28 chr15 35448985 35449200 -50246554 + L1MC5 LINE L1 7706 7926 -35 8539 111 9 6 chr15 35449270 35450527 -50245227 + L1P LINE L1 3505 4765 -1381 287 265 27 52 chr15 35450576 35450732 -50245022 - MIR SINE MIR -65 143 26 279 351 0 0 chr15 35451497 35451571 -50244183 - L2 LINE L2 -41 3231 3158 2055 171 67 11 chr15 35454816 35455261 -50240493 + MER63C DNA MER1_type 45 514 -416 422 200 74 89 chr15 35455261 35455396 -50240358 - FLAM_A SINE Alu 0 133 1 824 168 15 0 chr15 35455399 35455530 -50240224 - AluJo/FLAM SINE Alu -169 133 1 1927 151 17 7 chr15 35455530 35455828 -50239926 - AluJo SINE Alu -11 301 1 376 213 0 0 chr15 35455831 35455892 -50239862 - AluJ/FLAM SINE Alu -241 61 1 * 1100 179 63 50 chr15 35455892 35456274 -50239480 + MER63C DNA MER1_type 506 929 -1 455 287 45 94 chr15 35459115 35459359 -50236395 + MIR SINE MIR 12 243 -19 201 276 197 0 chr15 35459410 35459486 -50236268 - L2 LINE L2 -9 3263 3173 638 314 57 30 chr15 35459758 35460124 -50235630 - L2 LINE L2 -559 2755 2380 946 159 0 20 chr15 35460156 35460307 -50235447 + AluJo SINE Alu 1 148 -164 342 182 123 117 chr15 35460668 35460822 -50234932 + MER20B DNA MER1_type 628 782 -1 267 220 66 44 chr15 35461941 35462032 -50233722 + L1ME4a LINE L1 5996 6088 -33 724 203 0 16 chr15 35462581 35462709 -50233045 + FLAM_A SINE Alu 5 130 -3 1569 199 18 3 chr15 35462832 35463114 -50232640 - AluJb SINE Alu -26 286 1 183 114 0 0 chr15 35463151 35463186 -50232568 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 1695 148 4 11 chr15 35463186 35463464 -50232290 - AluJb SINE Alu -36 276 1 1520 187 40 4 chr15 35463788 35464066 -50231688 - AluJo SINE Alu -22 290 3 307 232 288 11 chr15 35464160 35464337 -50231417 + L1MC/D LINE L1 5562 5787 -2021 263 180 0 10 chr15 35464338 35464396 -50231358 + AluSp SINE Alu 124 170 -133 670 158 125 6 chr15 35464412 35464571 -50231183 - L1M4 LINE L1 -3917 2465 2295 724 187 8 15 chr15 35464710 35464844 -50230910 + FLAM_C SINE Alu 1 133 0 378 272 136 73 chr15 35465198 35465580 -50230174 + L1ME4a LINE L1 5558 5963 -158 527 233 29 47 chr15 35469258 35469430 -50226324 + MIR SINE MIR 84 252 -10 2197 154 96 51 chr15 35469837 35470325 -50225429 - LTR54 LTR ERV1 0 510 1 1712 138 72 18 chr15 35470393 35470669 -50225085 - AluSx SINE Alu -21 291 1 2493 87 0 0 chr15 35471087 35471397 -50224357 - AluSg SINE Alu 0 310 1 473 289 44 50 chr15 35471697 35471877 -50223877 - MIR3 SINE MIR -4 204 26 1190 243 36 26 chr15 35471983 35472288 -50223466 + MLT1A2 LTR MaLR 63 370 -4 674 254 78 41 chr15 35472343 35472587 -50223167 + MIR SINE MIR 8 260 -2 2377 80 7 0 chr15 35472680 35472982 -50222772 + AluSp SINE Alu 1 304 -9 2295 162 63 68 chr15 35473355 35473941 -50221813 - L1MB8 LINE L1 -1 6177 5595 597 184 29 0 chr15 35473941 35474044 -50221710 - AluSp SINE Alu -206 107 2 368 186 0 0 chr15 35474044 35474103 -50221651 - L1MB8 LINE L1 -570 5608 5550 315 306 25 31 chr15 35476726 35476886 -50218868 - MER117 DNA MER1_type -38 159 1 2203 95 7 7 chr15 35476946 35477242 -50218512 - AluSg SINE Alu -14 296 1 2184 114 3 3 chr15 35477294 35477592 -50218162 + AluSg SINE Alu 1 298 -12 2410 54 14 7 chr15 35477592 35477889 -50217865 + AluSp SINE Alu 1 299 -14 449 226 212 0 chr15 35477906 35478052 -50217702 - MER5A DNA MER1_type 0 189 13 21 0 0 0 chr15 35478372 35478393 -50217361 + AT_rich Low_complexity Low_complexity 1 21 0 222 253 313 0 chr15 35478875 35478958 -50216796 - L2 LINE L2 -6 3307 3199 240 86 0 0 chr15 35480030 35480065 -50215689 + (TA)n Simple_repeat Simple_repeat 1 35 0 21 57 0 0 chr15 35483030 35483065 -50212689 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr15 35483298 35483329 -50212425 + AT_rich Low_complexity Low_complexity 1 31 0 379 76 0 30 chr15 35484317 35484383 -50211371 + (CA)n Simple_repeat Simple_repeat 2 65 0 228 85 17 34 chr15 35485478 35485537 -50210217 + (CAAAAA)n Simple_repeat Simple_repeat 2 59 0 23 0 0 0 chr15 35486329 35486352 -50209402 + AT_rich Low_complexity Low_complexity 1 23 0 2113 115 3 10 chr15 35488171 35488475 -50207279 + AluSx SINE Alu 1 302 -10 200 272 25 49 chr15 35488569 35488650 -50207104 - MIR3 SINE MIR -115 93 15 224 232 0 0 chr15 35489247 35489303 -50206451 + A-rich Low_complexity Low_complexity 1 56 0 1814 153 0 20 chr15 35489643 35489938 -50205816 + AluJo SINE Alu 1 289 -23 709 286 43 17 chr15 35491749 35491980 -50203774 - MIR SINE MIR -10 252 16 30 43 0 43 chr15 35492346 35492388 -50203366 + AT_rich Low_complexity Low_complexity 1 40 -27 2083 119 3 0 chr15 35492388 35492673 -50203081 - AluSx SINE Alu -26 286 1 30 43 0 43 chr15 35492673 35492700 -50203054 + AT_rich Low_complexity Low_complexity 40 67 0 2051 117 7 0 chr15 35494188 35494494 -50201260 - AluSx SINE Alu 0 308 1 204 175 25 0 chr15 35494572 35494612 -50201142 - L2 LINE L2 -10 3303 3263 1911 123 4 7 chr15 35494658 35494934 -50200820 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr15 35494938 35494958 -50200796 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 216 219 0 24 chr15 35494973 35495014 -50200740 - MIR SINE MIR -195 67 28 863 222 82 16 chr15 35496527 35496770 -50198984 + MIR SINE MIR 4 262 0 1092 90 0 0 chr15 35496964 35497097 -50198657 + AluSq/x SINE Alu 1 133 -179 2134 112 10 10 chr15 35497103 35497398 -50198356 + AluSx SINE Alu 6 300 -12 254 191 21 128 chr15 35498572 35498666 -50197088 + MIR SINE MIR 20 103 -105 274 226 0 0 chr15 35498743 35498796 -50196958 - L3 LINE CR1 -5 1572 1520 780 281 48 43 chr15 35498835 35499182 -50196572 - MIR SINE MIR -1 261 13 475 295 134 34 chr15 35500973 35501271 -50194483 - MER102b DNA MER1_type -3 338 11 1670 172 0 21 chr15 35502691 35502981 -50192773 - AluJo SINE Alu -26 286 3 513 273 6 0 chr15 35505976 35506141 -50189613 - L1M4 LINE L1 -3140 3006 2841 951 141 134 149 chr15 35506153 35506283 -50189471 - AluJb SINE Alu -30 282 152 875 124 6 0 chr15 35506283 35506460 -50189294 + (TA)n Simple_repeat Simple_repeat 2 179 0 951 141 134 149 chr15 35506460 35506475 -50189279 - AluJb SINE Alu -160 152 138 1004 73 17 6 chr15 35506475 35506653 -50189101 + (TA)n Simple_repeat Simple_repeat 1 180 0 951 141 134 149 chr15 35506653 35506782 -50188972 - AluJb SINE Alu -174 138 11 607 276 101 31 chr15 35507033 35507518 -50188236 + L1ME4a LINE L1 5556 6074 -47 198 0 0 0 chr15 35507856 35507878 -50187876 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 233 317 112 45 chr15 35508190 35508414 -50187340 - L3b LINE CR1 -235 1348 1110 760 127 0 40 chr15 35508417 35508543 -50187211 - FLAM_A SINE Alu -9 133 13 1820 214 32 30 chr15 35508796 35509261 -50186493 + MER74A LTR ERVL 1 469 -89 1231 120 184 50 chr15 35509261 35509560 -50186194 + MER44D DNA MER2_type 1 609 0 1820 214 32 30 chr15 35509560 35509651 -50186103 + MER74A LTR ERVL 469 558 0 526 343 29 5 chr15 35509651 35509855 -50185899 - MIR SINE MIR -22 240 32 439 345 71 3 chr15 35510076 35510223 -50185531 + MARNA DNA Mariner 166 302 -284 270 0 0 0 chr15 35510223 35510253 -50185501 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 439 345 71 3 chr15 35510253 35510444 -50185310 + MARNA DNA Mariner 302 527 -59 1559 91 5 0 chr15 35511518 35511717 -50184037 - AluSx SINE Alu -112 200 1 829 164 90 53 chr15 35511717 35511906 -50183848 + AluJo SINE Alu 101 296 -16 664 264 156 0 chr15 35512146 35512358 -50183396 + MIR SINE MIR 18 262 0 391 309 50 70 chr15 35512397 35512598 -50183156 + MIR SINE MIR 35 231 -31 260 277 0 0 chr15 35512623 35512688 -50183066 + (CTA)n Simple_repeat Simple_repeat 2 66 0 212 100 25 0 chr15 35517112 35517152 -50178602 + (CAA)n Simple_repeat Simple_repeat 3 43 0 195 146 0 0 chr15 35517372 35517413 -50178341 + (T)n Simple_repeat Simple_repeat 1 41 0 1745 158 3 35 chr15 35519047 35519358 -50176396 - AluJo SINE Alu -11 301 1 250 327 53 35 chr15 35519438 35519551 -50176203 + L2 LINE L2 3133 3247 -25 768 264 111 5 chr15 35519703 35519919 -50175835 - MIR SINE MIR 0 262 24 937 198 0 11 chr15 35521274 35521451 -50174303 - FRAM SINE Alu -1 175 1 250 350 50 0 chr15 35522210 35522310 -50173444 - MIR SINE MIR -111 151 47 22 35 0 0 chr15 35526756 35526785 -50168969 + AT_rich Low_complexity Low_complexity 1 29 0 272 235 56 112 chr15 35527141 35527320 -50168434 + MIR SINE MIR 94 262 0 208 327 182 0 chr15 35527323 35527433 -50168321 - L3b LINE CR1 -187 1396 1267 333 275 9 18 chr15 35527858 35527967 -50167787 + HAL1b LINE L1 1234 1341 -7 370 300 113 33 chr15 35528239 35528389 -50167365 + MER91A DNA MER1_type 1 162 -34 373 232 0 32 chr15 35528972 35529067 -50166687 - MIR SINE MIR -74 188 97 224 238 126 97 chr15 35529215 35529405 -50166349 + MIR SINE MIR 19 216 -46 243 0 0 0 chr15 35529997 35530024 -50165730 + (CA)n Simple_repeat Simple_repeat 1 27 0 373 175 36 26 chr15 35532644 35532984 -50162770 + (CA)n Simple_repeat Simple_repeat 1 343 0 371 190 33 54 chr15 35533004 35533188 -50162566 + (CA)n Simple_repeat Simple_repeat 1 180 0 379 192 39 37 chr15 35533208 35533565 -50162189 + (CA)n Simple_repeat Simple_repeat 1 358 0 294 135 48 40 chr15 35533658 35533784 -50161970 + (CA)n Simple_repeat Simple_repeat 1 127 0 668 216 165 16 chr15 35534072 35534266 -50161488 + MIR SINE MIR 39 261 -1 1867 131 0 11 chr15 35534279 35534553 -50161201 - AluJb SINE Alu -17 295 25 533 299 71 50 chr15 35538024 35538124 -50157630 + MARNA DNA Mariner 133 229 -357 2219 100 3 10 chr15 35538124 35538425 -50157329 - AluSx SINE Alu -13 299 1 533 299 71 50 chr15 35538425 35538746 -50157008 + MARNA DNA Mariner 229 563 -23 2190 56 45 0 chr15 35539437 35539727 -50156027 - AluY SINE Alu 0 302 1 2201 110 0 0 chr15 35540813 35541121 -50154633 + AluSg1 SINE Alu 1 308 0 347 294 68 0 chr15 35542516 35542648 -50153106 - MIR3 SINE MIR -9 199 58 394 253 102 42 chr15 35543208 35543374 -50152380 + L2 LINE L2 3120 3295 -18 767 269 31 18 chr15 35543724 35543951 -50151803 + MIR SINE MIR 29 258 -4 280 309 3 7 chr15 35544269 35544350 -50151404 + MIR SINE MIR 1 81 -127 898 207 121 88 chr15 35544353 35544832 -50150922 + MER34B LTR ERV1 5 499 -66 23 0 0 0 chr15 35548789 35548812 -50146942 + AT_rich Low_complexity Low_complexity 1 23 0 248 263 90 83 chr15 35549972 35550128 -50145626 - L2 LINE L2 -1506 1808 1652 279 0 0 0 chr15 35551020 35551051 -50144703 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 335 136 8 6 chr15 35551768 35551889 -50143865 + MER53 DNA DNA 1 188 -1 266 227 13 0 chr15 35552286 35552344 -50143410 - MIR SINE MIR -56 152 91 426 299 21 53 chr15 35553106 35553293 -50142461 + MIR SINE MIR 32 212 -50 725 175 0 36 chr15 35553599 35553736 -50142018 + FLAM_A SINE Alu 1 132 -1 394 248 9 44 chr15 35554036 35554118 -50141636 + MIR3 SINE MIR 76 154 -54 1642 194 3 3 chr15 35554118 35554412 -50141342 - AluJo SINE Alu -18 294 1 394 248 9 44 chr15 35554412 35554442 -50141312 + MIR3 SINE MIR 154 184 -24 285 29 0 0 chr15 35554743 35554777 -50140977 + (CA)n Simple_repeat Simple_repeat 2 35 0 2152 111 0 10 chr15 35555435 35555733 -50140021 + AluSg SINE Alu 1 295 -15 307 226 24 36 chr15 35555993 35556077 -50139677 + MIR SINE MIR 67 149 -113 221 224 0 0 chr15 35558705 35558754 -50137000 + (CA)n Simple_repeat Simple_repeat 2 50 0 333 0 0 0 chr15 35559358 35559395 -50136359 + (CA)n Simple_repeat Simple_repeat 2 38 0 741 79 0 0 chr15 35559397 35559498 -50136256 + (TA)n Simple_repeat Simple_repeat 1 101 0 393 316 29 35 chr15 35559520 35559691 -50136063 + MIR3 SINE MIR 30 199 -9 289 267 193 27 chr15 35559815 35559965 -50135789 + MIR SINE MIR 26 200 -62 2674 154 2 5 chr15 35560181 35560615 -50135139 + Tigger2a DNA MER2_type 2 434 0 274 349 47 31 chr15 35560742 35560871 -50134883 - L2 LINE L2 -6 3266 3136 190 333 67 42 chr15 35560994 35561114 -50134640 - L2 LINE L2 -221 3051 2929 2355 105 0 0 chr15 35561114 35561420 -50134334 + AluSx SINE Alu 1 306 -6 672 308 54 14 chr15 35562722 35562943 -50132811 - MIR SINE MIR -25 237 8 24 53 0 0 chr15 35563740 35563778 -50131976 + AT_rich Low_complexity Low_complexity 1 38 0 2344 213 52 21 chr15 35564621 35565279 -50130475 - L1ME1 LINE L1 -6 6160 5483 2632 206 37 35 chr15 35565299 35565698 -50130056 + MER82 DNA MER2_type 3 405 -248 2335 73 17 10 chr15 35565698 35566000 -50129754 + AluSx SINE Alu 1 304 -8 2632 206 37 35 chr15 35566000 35566250 -50129504 + MER82 DNA MER2_type 405 653 0 437 310 35 69 chr15 35566346 35566520 -50129234 + L2 LINE L2 3105 3272 0 440 304 68 32 chr15 35566549 35566769 -50128985 + MIR SINE MIR 20 247 -15 197 210 247 37 chr15 35568053 35568134 -50127620 + L2 LINE L2 3175 3272 0 223 254 0 16 chr15 35568677 35568740 -50127014 + GA-rich Low_complexity Low_complexity 1 62 0 339 233 108 25 chr15 35570267 35570387 -50125367 - MIR SINE MIR -58 150 21 284 0 0 27 chr15 35572044 35572081 -50123673 + (CA)n Simple_repeat Simple_repeat 1 36 0 270 0 0 0 chr15 35573405 35573435 -50122319 + (A)n Simple_repeat Simple_repeat 1 30 0 202 219 24 0 chr15 35573459 35573500 -50122254 + L2 LINE L2 3254 3295 -18 216 0 0 0 chr15 35574507 35574531 -50121223 + (T)n Simple_repeat Simple_repeat 1 24 0 361 309 79 39 chr15 35575223 35575455 -50120299 + MIR SINE MIR 13 250 -12 405 0 0 0 chr15 35575542 35575587 -50120167 + (TG)n Simple_repeat Simple_repeat 2 46 0 407 256 76 104 chr15 35576480 35576730 -50119024 + MIR SINE MIR 2 244 -18 390 289 37 44 chr15 35578974 35579109 -50116645 + L2 LINE L2 3139 3272 0 201 121 0 0 chr15 35579473 35579506 -50116248 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 420 55 0 0 chr15 35579501 35579556 -50116198 + (GA)n Simple_repeat Simple_repeat 2 56 0 713 225 7 0 chr15 35582167 35582309 -50113445 + MIR SINE MIR 97 239 -23 201 211 0 0 chr15 35582361 35582399 -50113355 + L2 LINE L2 3256 3293 -20 24 0 0 0 chr15 35583044 35583068 -50112686 + AT_rich Low_complexity Low_complexity 1 24 0 203 347 14 0 chr15 35583125 35583197 -50112557 - L2 LINE L2 0 3272 3200 891 225 17 92 chr15 35583472 35583611 -50112143 + L1MC4 LINE L1 7736 7884 -158 2229 112 0 0 chr15 35583611 35583907 -50111847 + AluSq SINE Alu 1 296 -17 891 225 17 92 chr15 35583907 35584115 -50111639 + L1MC4 LINE L1 7884 8041 -1 1768 150 6 54 chr15 35584177 35584491 -50111263 + AluJb SINE Alu 1 299 -13 2076 132 0 0 chr15 35584574 35584862 -50110892 - AluSx SINE Alu -24 288 1 506 309 164 5 chr15 35585281 35585501 -50110253 - MIR SINE MIR -6 256 2 21 0 0 0 chr15 35585632 35585653 -50110101 + AT_rich Low_complexity Low_complexity 1 21 0 188 222 0 16 chr15 35586057 35586120 -50109634 + CT-rich Low_complexity Low_complexity 3 64 0 235 153 51 0 chr15 35586303 35586362 -50109392 + LTR66 LTR ERVL 380 441 -169 257 150 12 38 chr15 35586366 35586446 -50109308 + (TA)n Simple_repeat Simple_repeat 1 78 0 252 0 0 0 chr15 35587074 35587102 -50108652 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1340 284 30 5 chr15 35587189 35587590 -50108164 + L1MC4a LINE L1 5496 5906 -1902 276 30 0 0 chr15 35588252 35588285 -50107469 + (TTG)n Simple_repeat Simple_repeat 1 33 0 290 319 42 0 chr15 35588425 35588544 -50107210 - MIR SINE MIR -34 228 105 274 258 23 70 chr15 35588991 35589119 -50106635 - L2 LINE L2 -1 3312 3191 326 348 25 103 chr15 35589548 35589830 -50105924 + L2 LINE L2 2927 3186 -86 22 0 0 0 chr15 35589830 35589852 -50105902 + AT_rich Low_complexity Low_complexity 1 22 0 1586 196 119 5 chr15 35589852 35590229 -50105525 - L1MD3 LINE L1 -2 7993 7574 1004 217 9 13 chr15 35590229 35590455 -50105299 - AluJo SINE Alu -1 311 87 218 263 25 50 chr15 35590472 35590552 -50105202 + L2 LINE L2 3195 3272 0 362 235 154 51 chr15 35590904 35591055 -50104699 + L2 LINE L2 2986 3171 -142 1736 99 0 0 chr15 35591055 35591276 -50104478 - AluSc SINE Alu -5 304 84 362 235 154 51 chr15 35591276 35591358 -50104396 + L2 LINE L2 3171 3243 -70 255 273 50 30 chr15 35592659 35592758 -50102996 - MIR3 SINE MIR -53 155 55 2468 70 6 10 chr15 35592759 35593071 -50102683 - AluSx SINE Alu -1 311 1 2296 72 3 7 chr15 35593994 35594286 -50101468 - AluY SINE Alu -20 291 1 471 108 0 14 chr15 35594331 35594405 -50101349 - MER53 DNA DNA -1 188 116 * 532 117 175 0 chr15 35594343 35594446 -50101308 + MER53 DNA DNA 23 143 -46 23 0 0 0 chr15 35594471 35594494 -50101260 + AT_rich Low_complexity Low_complexity 1 23 0 195 42 0 0 chr15 35594750 35594774 -50100980 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr15 35595181 35595202 -50100552 + AT_rich Low_complexity Low_complexity 1 21 0 2284 97 0 0 chr15 35596279 35596579 -50099175 - AluSc SINE Alu -9 300 1 365 96 0 0 chr15 35598269 35598321 -50097433 + MADE1 DNA Mariner 1 52 -28 1082 262 94 37 chr15 35598518 35599060 -50096694 - L1ME4a LINE L1 -10 6111 5539 21 36 0 0 chr15 35599420 35599448 -50096306 + AT_rich Low_complexity Low_complexity 1 28 0 201 74 0 0 chr15 35599683 35599710 -50096044 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 229 214 34 34 chr15 35600185 35600274 -50095480 + L1ME4a LINE L1 5995 6083 -38 555 286 116 5 chr15 35601884 35602083 -50093671 + MIR SINE MIR 34 254 -8 1210 314 91 45 chr15 35602144 35602820 -50092934 + L2 LINE L2 2499 3229 -84 1838 158 7 10 chr15 35602820 35603123 -50092631 - AluJb SINE Alu -8 304 3 1210 314 91 45 chr15 35603123 35603208 -50092546 + L2 LINE L2 3229 3309 -4 203 319 17 59 chr15 35603199 35603288 -50092466 + L3b LINE CR1 1465 1549 -34 * 2332 98 0 3 chr15 35603288 35603584 -50092170 - AluSx SINE Alu -17 295 1 203 319 17 59 chr15 35603584 35603613 -50092141 + L3b LINE CR1 1549 1578 -5 532 337 151 26 chr15 35603908 35604365 -50091389 + L3 LINE CR1 940 1453 -124 1377 191 66 11 chr15 35604487 35604759 -50090995 + AluJo SINE Alu 7 293 -19 1629 154 59 11 chr15 35604763 35605036 -50090718 + AluSx SINE Alu 1 286 -26 192 77 0 0 chr15 35605039 35605065 -50090689 + (CATA)n Simple_repeat Simple_repeat 2 27 0 230 362 19 0 chr15 35607093 35607198 -50088556 + GA-rich Low_complexity Low_complexity 3 109 0 1755 100 116 4 chr15 35607292 35607551 -50088203 - AluSx SINE Alu -12 300 13 23 0 0 0 chr15 35607668 35607691 -50088063 + AT_rich Low_complexity Low_complexity 1 23 0 222 254 34 0 chr15 35607715 35607774 -50087980 + (CATA)n Simple_repeat Simple_repeat 1 61 0 344 363 22 7 chr15 35608105 35608240 -50087514 + L2 LINE L2 2954 3090 -182 256 228 89 44 chr15 35608635 35608779 -50086975 + MIR SINE MIR 34 192 -64 530 283 50 11 chr15 35612710 35612890 -50082864 - MIR SINE MIR -72 190 4 328 253 67 14 chr15 35614024 35614149 -50081605 + MIR SINE MIR 20 142 -66 560 298 95 44 chr15 35614175 35614427 -50081327 + L3 LINE CR1 1312 1576 -1 294 95 0 0 chr15 35615162 35615204 -50080550 + (TG)n Simple_repeat Simple_repeat 2 43 0 338 289 87 10 chr15 35615454 35615558 -50080196 - MIR SINE MIR -108 154 43 183 80 0 0 chr15 35616276 35616301 -50079453 + (CAAG)n Simple_repeat Simple_repeat 2 26 0 2334 168 59 30 chr15 35616418 35616889 -50078865 + MLT1D LTR MaLR 21 505 0 207 0 0 0 chr15 35617041 35617064 -50078690 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 196 318 0 16 chr15 35617408 35617471 -50078283 + L2 LINE L2 3249 3310 -3 321 295 134 7 chr15 35618010 35618159 -50077595 - MIR3 SINE MIR -6 202 35 227 235 29 44 chr15 35618231 35618299 -50077455 + LTR11 LTR ERV 412 478 -206 191 170 0 38 chr15 35619091 35619144 -50076610 + CT-rich Low_complexity Low_complexity 6 56 0 1941 119 91 0 chr15 35619941 35620226 -50075528 - AluSx SINE Alu -1 311 1 22 35 0 0 chr15 35620517 35620546 -50075208 + AT_rich Low_complexity Low_complexity 1 29 0 572 261 48 48 chr15 35621654 35621988 -50073766 - L1MC5 LINE L1 -77 7884 7551 1000 289 60 26 chr15 35624701 35625116 -50070638 + LTR16A LTR ERVL 16 444 -6 2074 138 3 0 chr15 35625328 35625626 -50070128 - AluSq SINE Alu -14 299 1 21 0 0 0 chr15 35626632 35626653 -50069101 + AT_rich Low_complexity Low_complexity 1 21 0 1924 128 62 0 chr15 35627558 35627847 -50067907 - AluSq SINE Alu -6 307 1 1546 172 3 60 chr15 35628040 35628359 -50067395 - AluJo SINE Alu -11 301 1 218 323 107 45 chr15 35628446 35628793 -50066961 - L2 LINE L2 -176 3096 2725 1860 166 3 13 chr15 35629484 35629797 -50065957 - AluJo SINE Alu -2 310 1 24 0 0 0 chr15 35629812 35629836 -50065918 + AT_rich Low_complexity Low_complexity 1 24 0 294 50 0 0 chr15 35631210 35631250 -50064504 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 367 20 82 0 chr15 35631626 35631675 -50064079 - MADE1 DNA Mariner 0 80 28 1995 153 0 0 chr15 35632073 35632368 -50063386 - AluSx SINE Alu -17 295 1 270 0 0 0 chr15 35632926 35632956 -50062798 + (TA)n Simple_repeat Simple_repeat 2 31 0 906 110 0 8 chr15 35633354 35633472 -50062282 + AluJo/FLAM SINE Alu 1 117 -185 995 94 0 0 chr15 35633475 35633602 -50062152 - AluSg/x SINE Alu -16 296 170 2462 46 0 0 chr15 35633781 35634123 -50061631 - AluY SINE Alu 0 342 1 1620 101 18 0 chr15 35634686 35634904 -50060850 + AluSg/x SINE Alu 85 306 -4 340 321 197 5 chr15 35635697 35635890 -50059864 - MIR SINE MIR -7 255 26 3018 130 122 17 chr15 35635905 35636382 -50059372 + MER1A DNA MER1_type 1 527 0 2270 95 3 7 chr15 35636667 35636963 -50058791 + AluSp SINE Alu 1 295 -18 293 272 83 41 chr15 35637376 35637545 -50058209 - MIR3 SINE MIR -30 178 3 189 250 21 0 chr15 35637806 35637854 -50057900 + L2 LINE L2 3265 3313 0 246 291 76 71 chr15 35638673 35638883 -50056871 + Charlie8 DNA MER1_type 38 248 -2169 341 280 34 17 chr15 35640108 35640226 -50055528 + MIR SINE MIR 40 159 -103 2169 113 0 17 chr15 35640519 35640819 -50054935 - AluSx SINE Alu -17 295 1 2250 112 3 0 chr15 35640821 35641125 -50054629 - AluSx SINE Alu -7 305 1 307 284 83 9 chr15 35641352 35641461 -50054293 - MIR SINE MIR -61 147 31 592 235 123 0 chr15 35642489 35642652 -50053102 - MER5A DNA MER1_type 0 189 4 1442 135 82 4 chr15 35642972 35643217 -50052537 + MER21A LTR ERV1 1 264 -667 3052 172 61 11 chr15 35643222 35643750 -50052004 + MER21A LTR ERV1 376 929 -2 223 286 95 0 chr15 35643756 35643840 -50051914 + MIR SINE MIR 157 248 -14 225 122 20 61 chr15 35644081 35644130 -50051624 - L2 LINE L2 -2 3270 3224 1956 130 21 0 chr15 35644249 35644534 -50051220 - AluSx SINE Alu -1 311 21 205 86 29 0 chr15 35645484 35645519 -50050235 + (TG)n Simple_repeat Simple_repeat 1 36 0 648 245 47 82 chr15 35645582 35645925 -50049829 + L1MC5 LINE L1 7604 7934 -27 23 78 0 0 chr15 35649552 35649603 -50046151 + AT_rich Low_complexity Low_complexity 1 51 0 207 188 0 0 chr15 35650146 35650194 -50045560 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 274 313 40 20 chr15 35650203 35650302 -50045452 - L2 LINE L2 -10 3303 3203 731 262 80 22 chr15 35650723 35650948 -50044806 - MIR SINE MIR -10 252 15 191 341 49 49 chr15 35651149 35651272 -50044482 + L2 LINE L2 3150 3272 0 1684 98 47 4 chr15 35651890 35652145 -50043609 - L1MA2 LINE L1 0 6304 6039 201 381 24 12 chr15 35652571 35652655 -50043099 - MIR SINE MIR -170 92 8 200 241 19 19 chr15 35652881 35652935 -50042819 - L2 LINE L2 -22 3291 3238 198 357 60 12 chr15 35655159 35655327 -50040427 - L2 LINE L2 -19 3294 3119 31 68 0 0 chr15 35655334 35655393 -50040361 + AT_rich Low_complexity Low_complexity 1 59 0 339 272 43 11 chr15 35655873 35655965 -50039789 + MIR SINE MIR 37 131 -77 1031 104 31 31 chr15 35657357 35657520 -50038234 - L1PA13 LINE L1 -2 6161 5999 329 340 6 0 chr15 35659143 35659305 -50036449 + (CA)n Simple_repeat Simple_repeat 2 164 0 408 40 0 0 chr15 35660376 35660426 -50035328 + (GA)n Simple_repeat Simple_repeat 2 51 0 212 294 12 12 chr15 35660441 35660526 -50035228 + GA-rich Low_complexity Low_complexity 1 85 0 789 170 182 0 chr15 35660643 35660802 -50034952 + MER5A DNA MER1_type 1 188 -1 657 112 0 0 chr15 35663231 35663320 -50032434 + 5S rRNA rRNA 2 90 -31 1101 162 22 5 chr15 35663883 35664068 -50031686 + MER5A DNA MER1_type 2 189 0 764 184 54 84 chr15 35664922 35665161 -50030593 + ORSL DNA AcHobo 1 232 -43 1911 180 88 28 chr15 35665168 35665601 -50030153 - MLT1C LTR MaLR -7 460 2 1790 164 10 3 chr15 35665752 35666044 -50029710 + AluJb SINE Alu 1 294 -18 201 180 0 0 chr15 35668552 35668602 -50027152 + (TA)n Simple_repeat Simple_repeat 2 51 0 3197 153 31 31 chr15 35668819 35669427 -50026327 - L1MA8 LINE L1 -2 6289 5682 2243 107 24 0 chr15 35669478 35669776 -50025978 - AluSx SINE Alu -7 305 1 437 313 10 36 chr15 35670912 35671104 -50024650 + MIR SINE MIR 10 196 -66 418 273 12 13 chr15 35675441 35675561 -50020193 - MER5A DNA MER1_type -3 178 57 1871 163 0 7 chr15 35676207 35676496 -50019258 + AluJb SINE Alu 1 287 -25 775 268 73 0 chr15 35676500 35676705 -50019049 - MIR SINE MIR -4 258 39 217 191 0 21 chr15 35677853 35677900 -50017854 + (TAA)n Simple_repeat Simple_repeat 3 48 0 365 285 75 70 chr15 35677903 35678131 -50017623 - MIR SINE MIR -21 241 13 272 270 119 22 chr15 35678140 35678300 -50017454 - MIR SINE MIR -54 208 36 216 283 67 67 chr15 35679610 35679730 -50016024 + MIR3 SINE MIR 15 134 -74 337 240 124 31 chr15 35679801 35679930 -50015824 - L2 LINE L2 0 3313 3173 349 346 57 9 chr15 35679942 35680153 -50015601 - MIR SINE MIR -19 243 23 213 271 103 56 chr15 35680334 35680441 -50015313 - MIR SINE MIR -64 198 87 426 245 99 40 chr15 35681150 35681301 -50014453 - MIR3 SINE MIR -12 196 37 5784 26 0 1 chr15 35681444 35682104 -50013650 - L1PA4 LINE L1 0 6155 5497 236 309 12 12 chr15 35682113 35682197 -50013557 + L2 LINE L2 3187 3270 -2 228 67 0 0 chr15 35682361 35682391 -50013363 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 377 250 50 10 chr15 35682394 35682494 -50013260 - L2 LINE L2 -16 3297 3194 332 303 10 0 chr15 35683914 35684013 -50011741 + L2 LINE L2 2923 3022 -291 260 271 14 0 chr15 35684125 35684195 -50011559 + L2 LINE L2 3242 3312 -1 219 315 8 8 chr15 35684214 35684341 -50011413 + L2 LINE L2 2068 2194 -1120 218 264 121 22 chr15 35684537 35684628 -50011126 + L2 LINE L2 2215 2314 -1000 211 259 148 0 chr15 35684625 35684679 -50011075 + L2 LINE L2 3190 3251 -21 * 383 266 39 39 chr15 35685376 35685504 -50010250 - MIR SINE MIR -65 143 16 246 81 0 0 chr15 35687309 35687346 -50008408 + (CA)n Simple_repeat Simple_repeat 2 38 0 258 290 0 0 chr15 35687378 35687447 -50008307 - MER116 DNA Mariner -11 69 1 295 59 20 20 chr15 35688993 35689044 -50006710 + (CA)n Simple_repeat Simple_repeat 2 52 0 261 0 0 0 chr15 35689527 35689556 -50006198 + (T)n Simple_repeat Simple_repeat 1 29 0 577 298 40 10 chr15 35690699 35690897 -50004857 + MIR3 SINE MIR 2 205 -3 23 54 0 0 chr15 35692789 35692826 -50002928 + AT_rich Low_complexity Low_complexity 1 37 0 597 328 31 0 chr15 35693434 35693626 -50002128 + Charlie8 DNA MER1_type 1 198 -2219 275 335 59 0 chr15 35693817 35693969 -50001785 - MIR SINE MIR -50 212 52 338 381 62 30 chr15 35694053 35694455 -50001299 + L2 LINE L2 2831 3245 -27 963 192 0 0 chr15 35697074 35697246 -49998508 - FAM SINE Alu -3 172 1 1126 144 5 0 chr15 35697350 35697537 -49998217 - MER53 DNA DNA -1 188 1 189 357 48 34 chr15 35697733 35698002 -49997752 + L2 LINE L2 3031 3303 -10 199 264 0 0 chr15 35698222 35698275 -49997479 + MIR SINE MIR 92 144 -118 27 0 0 0 chr15 35698490 35698517 -49997237 + AT_rich Low_complexity Low_complexity 1 27 0 1683 80 0 4 chr15 35698517 35698742 -49997012 - L1PA6 LINE L1 0 6154 5931 566 276 29 0 chr15 35699784 35699954 -49995800 - L1MC4 LINE L1 -111 7931 7757 195 326 95 0 chr15 35700078 35700173 -49995581 - MIR SINE MIR -57 151 48 581 268 51 65 chr15 35703261 35703537 -49992217 + L2 LINE L2 3042 3313 0 440 208 42 0 chr15 35703803 35703899 -49991855 + MIR SINE MIR 33 132 -76 243 0 0 0 chr15 35704683 35704710 -49991044 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 227 325 49 8 chr15 35705452 35705575 -49990179 - MIR SINE MIR -45 217 90 379 295 58 35 chr15 35706649 35706822 -49988932 + MER5B DNA MER1_type 2 178 0 214 333 49 0 chr15 35707201 35707282 -49988472 - L2 LINE L2 -16 3256 3172 564 322 5 0 chr15 35707340 35707539 -49988215 - MIR SINE MIR -1 261 62 2353 92 0 0 chr15 35708404 35708707 -49987047 + AluSc SINE Alu 1 303 -6 516 254 101 56 chr15 35709187 35709632 -49986122 + L1ME LINE L1 5374 5834 -317 738 134 63 0 chr15 35709828 35709970 -49985784 - L1MA8 LINE L1 -5 6286 6136 221 250 112 14 chr15 35711139 35711238 -49984516 + MIR SINE MIR 40 146 -66 197 369 28 28 chr15 35712016 35712192 -49983562 + L2 LINE L2 2788 2963 -351 217 286 151 25 chr15 35712343 35712462 -49983292 + L2 LINE L2 3180 3313 0 228 290 0 0 chr15 35712674 35712743 -49983011 + MIR SINE MIR 88 156 -106 191 328 16 0 chr15 35714044 35714108 -49981646 - L2 LINE L2 -22 3250 3186 454 296 80 65 chr15 35714336 35714660 -49981094 - L2 LINE L2 -7 3265 2937 246 232 214 9 chr15 35714660 35714772 -49980982 - L2 LINE L2 -1 3271 3137 190 236 18 0 chr15 35714800 35714855 -49980899 - L2 LINE L2 -286 2986 2931 327 165 38 51 chr15 35716049 35716128 -49979626 - MER69 DNA AcHobo 0 2526 2449 * 747 243 0 0 chr15 35716122 35716270 -49979484 - MER69 DNA AcHobo -2378 148 1 360 326 5 42 chr15 35716614 35716804 -49978950 - MER5A DNA MER1_type 0 189 7 275 201 147 71 chr15 35717574 35717720 -49978034 + MIR SINE MIR 13 175 -66 1938 262 73 46 chr15 35717791 35719309 -49976445 + L1ME LINE L1 43 1659 -4602 444 289 16 0 chr15 35719533 35719654 -49976100 + MIR3 SINE MIR 78 200 -8 275 205 36 116 chr15 35722323 35722435 -49973319 + MIR SINE MIR 86 188 -74 2345 164 29 56 chr15 35722923 35723441 -49972313 + L1MB4 LINE L1 5440 5943 -231 230 156 47 0 chr15 35723449 35723513 -49972241 + (TA)n Simple_repeat Simple_repeat 1 67 0 182 61 0 30 chr15 35723513 35723546 -49972208 + (TTA)n Simple_repeat Simple_repeat 2 33 0 903 198 121 0 chr15 35723550 35723757 -49971997 + L1MB4 LINE L1 5949 6180 0 219 36 0 0 chr15 35724673 35724701 -49971053 + (CA)n Simple_repeat Simple_repeat 2 29 0 375 290 35 41 chr15 35725109 35725254 -49970500 + MIR SINE MIR 8 151 -111 28 0 0 0 chr15 35725971 35725999 -49969755 + AT_rich Low_complexity Low_complexity 1 28 0 734 157 5 110 chr15 35726468 35726659 -49969095 - MER63B DNA MER1_type -265 171 1 190 370 76 66 chr15 35727151 35727440 -49968314 + L2 LINE L2 2976 3267 -5 219 314 9 9 chr15 35728397 35728502 -49967252 - MIR SINE MIR -63 145 41 207 313 68 25 chr15 35728570 35728733 -49967021 + MIR SINE MIR 21 190 -72 310 185 25 0 chr15 35728998 35729079 -49966675 + (TG)n Simple_repeat Simple_repeat 2 84 0 23 0 0 0 chr15 35729383 35729406 -49966348 + AT_rich Low_complexity Low_complexity 1 23 0 253 248 316 0 chr15 35730026 35730143 -49965611 + MIR3 SINE MIR 48 201 -7 2334 92 10 0 chr15 35730439 35730745 -49965009 + AluSp SINE Alu 1 309 -4 446 312 59 14 chr15 35730761 35730982 -49964772 - MIR SINE MIR -24 238 8 470 256 156 6 chr15 35731857 35732069 -49963685 + MIR SINE MIR 17 256 -6 284 347 104 14 chr15 35732149 35732293 -49963461 + MIR3 SINE MIR 29 185 -23 287 255 62 42 chr15 35733042 35733212 -49962542 - MIR SINE MIR -70 192 20 6754 164 29 2 chr15 35733334 35733751 -49962003 + L1PB1 LINE L1 3981 4385 -1766 252 0 0 0 chr15 35733751 35733779 -49961975 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6754 164 29 2 chr15 35733779 35735134 -49960620 + L1PB1 LINE L1 4385 5790 -361 26 50 0 0 chr15 35735135 35735175 -49960579 + AT_rich Low_complexity Low_complexity 1 40 0 2455 86 7 87 chr15 35735191 35735610 -49960144 + L1PB1 LINE L1 5767 6150 -1 3801 249 94 27 chr15 35735790 35737993 -49957761 - HAL1 LINE L1 -1 2506 8 580 284 53 0 chr15 35738484 35738653 -49957101 + MIR SINE MIR 14 191 -71 1734 172 0 20 chr15 35738659 35738956 -49956798 + AluJo SINE Alu 6 296 -16 183 167 0 0 chr15 35739008 35739044 -49956710 + L2 LINE L2 3221 3256 -16 261 236 82 36 chr15 35739591 35739701 -49956053 - MLT1J1 LTR MaLR -308 138 24 227 355 32 8 chr15 35740186 35740310 -49955444 - MIR SINE MIR -50 212 86 242 275 187 0 chr15 35740835 35740926 -49954828 + L2 LINE L2 3201 3308 -5 206 321 0 37 chr15 35741486 35741595 -49954159 + MIR SINE MIR 83 187 -75 22 0 0 0 chr15 35742227 35742249 -49953505 + AT_rich Low_complexity Low_complexity 1 22 0 264 107 0 89 chr15 35742304 35742473 -49953281 + (TA)n Simple_repeat Simple_repeat 1 154 0 295 141 0 73 chr15 35742508 35742974 -49952780 + (TATATG)n Simple_repeat Simple_repeat 1 431 0 845 25 0 2 chr15 35742992 35743136 -49952618 + L1PA4 LINE L1 6028 6169 0 653 263 5 5 chr15 35743161 35743370 -49952384 - L1M4 LINE L1 -3659 2487 2279 905 120 108 6 chr15 35743377 35743544 -49952210 - L1MA7 LINE L1 0 6291 6108 1021 129 25 6 chr15 35743544 35743707 -49952047 - Tigger1 DNA MER2_type -2 2416 2251 831 137 78 13 chr15 35743710 35743863 -49951891 - Tigger1 DNA MER2_type -2255 163 1 410 134 27 130 chr15 35743863 35744053 -49951701 - L1MA6 LINE L1 -175 6122 5953 206 205 0 0 chr15 35744242 35744281 -49951473 + L2 LINE L2 3271 3309 -4 606 88 0 0 chr15 35744556 35744636 -49951118 + MADE1 DNA Mariner 1 80 0 379 234 75 10 chr15 35744742 35744915 -49950839 - MIR SINE MIR -56 206 24 498 33 0 0 chr15 35746121 35746181 -49949573 + (CA)n Simple_repeat Simple_repeat 2 61 0 261 273 124 25 chr15 35747936 35748097 -49947657 + L2 LINE L2 3130 3306 -7 * 627 264 8 73 chr15 35748082 35748328 -49947426 - MIR SINE MIR -10 252 23 201 354 20 0 chr15 35748389 35748488 -49947266 - MIR3 SINE MIR -3 205 105 364 320 33 0 chr15 35748579 35748732 -49947022 - MIR3 SINE MIR -15 193 36 453 158 34 118 chr15 35749081 35749245 -49946509 + MER5B DNA MER1_type 21 164 -14 187 167 28 0 chr15 35749286 35749322 -49946432 + MER5A DNA MER1_type 39 75 -114 599 179 19 13 chr15 35749344 35749500 -49946254 + CT-rich Low_complexity Low_complexity 4 160 0 259 141 31 31 chr15 35749520 35749584 -49946170 + CT-rich Low_complexity Low_complexity 1 64 0 858 194 0 0 chr15 35749584 35749728 -49946026 - FRAM SINE Alu -25 151 8 289 288 98 44 chr15 35749744 35749949 -49945805 + L2 LINE L2 3098 3313 0 735 234 0 23 chr15 35750933 35751108 -49944646 + MIR SINE MIR 37 207 -55 223 286 52 0 chr15 35752095 35752172 -49943582 + MIR3 SINE MIR 127 207 -1 225 171 24 0 chr15 35752617 35752658 -49943096 + GA-rich Low_complexity Low_complexity 2 43 0 378 0 0 0 chr15 35753120 35753162 -49942592 + (TC)n Simple_repeat Simple_repeat 2 43 0 220 242 0 32 chr15 35756294 35756356 -49939398 + L2 LINE L2 3254 3313 0 24 32 0 0 chr15 35756527 35756558 -49939196 + AT_rich Low_complexity Low_complexity 1 31 0 831 231 131 3 chr15 35756579 35756861 -49938893 - L1ME4a LINE L1 -14 6107 5790 198 167 0 0 chr15 35757296 35757332 -49938422 + (TG)n Simple_repeat Simple_repeat 1 36 0 450 304 24 23 chr15 35758435 35758611 -49937143 + MLT1J LTR MaLR 5 222 -271 442 224 31 10 chr15 35758644 35758742 -49937012 - MER81 DNA DNA -11 103 4 334 284 108 54 chr15 35758810 35758958 -49936796 + MLT1J LTR MaLR 318 473 -38 2510 61 3 0 chr15 35759273 35759567 -49936187 - AluY SINE Alu -16 295 1 2177 112 0 0 chr15 35759572 35759858 -49935896 - AluSx SINE Alu -4 308 23 213 343 78 0 chr15 35760141 35760243 -49935511 + MIR3 SINE MIR 3 112 -96 201 267 116 12 chr15 35761936 35762022 -49933732 - MIR SINE MIR -50 212 118 974 116 0 0 chr15 35763402 35763531 -49932223 - FLAM_C SINE Alu -9 134 6 336 48 0 0 chr15 35765208 35765250 -49930504 + (CA)n Simple_repeat Simple_repeat 2 43 0 2286 66 0 33 chr15 35765250 35765553 -49930201 - AluY SINE Alu -18 293 1 201 157 59 20 chr15 35765553 35765593 -49930161 - L2 LINE L2 -6 3307 3261 329 64 0 0 chr15 35765771 35765818 -49929936 + MADE1 DNA Mariner 34 80 0 199 361 0 12 chr15 35765828 35765911 -49929843 - MIR SINE MIR -86 122 41 273 185 0 0 chr15 35767779 35767844 -49927910 + CT-rich Low_complexity Low_complexity 1 65 0 183 352 116 19 chr15 35768785 35769001 -49926753 - MIR SINE MIR -13 249 13 377 266 51 38 chr15 35769677 35769835 -49925919 - MIR3 SINE MIR -29 179 20 244 337 50 70 chr15 35770362 35770662 -49925092 + L2 LINE L2 2944 3237 -35 195 42 0 0 chr15 35770758 35770782 -49924972 + (TTG)n Simple_repeat Simple_repeat 2 25 0 201 39 0 0 chr15 35771384 35771410 -49924344 + (TG)n Simple_repeat Simple_repeat 2 27 0 348 256 61 55 chr15 35771915 35772079 -49923675 + MIR SINE MIR 56 220 -42 2353 77 3 0 chr15 35772103 35772402 -49923352 - AluY SINE Alu -11 300 1 206 176 0 0 chr15 35772457 35772491 -49923263 - MIR SINE MIR -85 123 90 1495 199 16 9 chr15 35773917 35774238 -49921516 + MER33 DNA MER1_type 2 324 0 185 208 0 0 chr15 35774516 35774564 -49921190 + L2 LINE L2 3012 3059 -254 2125 167 136 11 chr15 35774564 35774902 -49920852 + MLT1D LTR MaLR 1 410 -95 2208 141 123 5 chr15 35774902 35775285 -49920469 - MSTA LTR MaLR 0 428 1 2125 167 136 11 chr15 35775285 35775395 -49920359 + MLT1D LTR MaLR 410 505 0 438 258 6 55 chr15 35775508 35775671 -49920083 + L2 LINE L2 3158 3312 -1 667 204 74 49 chr15 35775973 35776135 -49919619 + MER63A DNA MER1_type 1 166 -44 489 281 106 15 chr15 35776766 35776965 -49918789 + MIR SINE MIR 35 251 -11 252 143 0 0 chr15 35778064 35778120 -49917634 + (TG)n Simple_repeat Simple_repeat 1 56 0 377 278 28 61 chr15 35778719 35778899 -49916855 + MIR SINE MIR 79 252 -10 252 286 29 67 chr15 35780112 35780296 -49915458 + MIR SINE MIR 15 190 -72 2183 92 7 0 chr15 35780343 35780646 -49915108 + AluSc SINE Alu 5 309 0 2072 97 14 7 chr15 35781968 35782272 -49913482 - AluSg SINE Alu 0 306 1 241 299 39 47 chr15 35782313 35782440 -49913314 + MER5A DNA MER1_type 52 177 -12 415 171 38 19 chr15 35784170 35784275 -49911479 - MIR3 SINE MIR -1 207 101 233 248 149 33 chr15 35784302 35784423 -49911331 + MIR SINE MIR 1 135 -127 297 0 0 0 chr15 35785050 35785083 -49910671 + (CA)n Simple_repeat Simple_repeat 2 34 0 357 146 0 203 chr15 35785698 35785821 -49909933 + MER5A DNA MER1_type 9 106 -83 780 176 69 25 chr15 35785821 35785980 -49909774 - FRAM SINE Alu -1 175 10 236 122 0 20 chr15 35785985 35786062 -49909692 - FLAM_C SINE Alu 0 161 86 244 250 0 42 chr15 35787112 35787184 -49908570 - L2 LINE L2 -3 3269 3201 226 227 15 15 chr15 35787714 35787780 -49907974 - MIR SINE MIR -38 224 159 708 167 9 0 chr15 35787896 35788010 -49907744 - FLAM_A SINE Alu -18 115 1 306 262 76 44 chr15 35789468 35789612 -49906142 - MIR SINE MIR -67 141 33 455 274 0 0 chr15 35789950 35790067 -49905687 + MIR SINE MIR 112 228 -34 2303 111 0 0 chr15 35790165 35790462 -49905292 - AluSg SINE Alu -13 297 1 487 261 76 6 chr15 35791548 35791705 -49904049 + MIR3 SINE MIR 39 206 -2 2081 143 84 10 chr15 35792313 35792704 -49903050 - L1MA4 LINE L1 -29 6271 5852 2264 201 88 117 chr15 35792727 35793178 -49902576 + MER21B LTR ERV1 12 474 -389 438 69 0 0 chr15 35793178 35793236 -49902518 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 1745 138 0 0 chr15 35793237 35793491 -49902263 - AluSx SINE Alu -26 286 33 2264 201 88 117 chr15 35793491 35793843 -49901911 + MER21B LTR ERV1 473 794 -69 301 252 176 0 chr15 35794518 35794637 -49901117 + L3 LINE CR1 1341 1480 -97 276 289 96 0 chr15 35794653 35794757 -49900997 + MIR SINE MIR 117 230 -32 204 296 34 45 chr15 35796540 35796628 -49899126 - L2 LINE L2 -4 3268 3182 1601 148 4 8 chr15 35798124 35798388 -49897366 + L1MD3 LINE L1 7731 7993 -2 483 60 0 0 chr15 35799582 35799649 -49896105 + (TG)n Simple_repeat Simple_repeat 1 67 0 475 241 56 0 chr15 35800641 35800749 -49895005 - L2 LINE L2 -9 3304 3191 840 255 37 9 chr15 35800752 35800968 -49894786 - MER58A DNA MER1_type -1 223 2 441 315 103 13 chr15 35801110 35801342 -49894412 + MIR SINE MIR 7 259 -3 180 200 0 0 chr15 35801348 35801393 -49894361 + (CAA)n Simple_repeat Simple_repeat 2 46 0 216 229 0 0 chr15 35801393 35801441 -49894313 - MIR SINE MIR -83 125 78 504 269 39 0 chr15 35801464 35801594 -49894160 + L2 LINE L2 3174 3308 -5 1717 84 46 0 chr15 35803213 35803452 -49892302 + L1PA13 LINE L1 5910 6159 -4 220 333 0 23 chr15 35803672 35803759 -49891995 + L2 LINE L2 3188 3272 0 22 0 0 0 chr15 35804087 35804109 -49891645 + AT_rich Low_complexity Low_complexity 1 22 0 2281 78 16 56 chr15 35804392 35804714 -49891040 + AluY SINE Alu 1 309 -2 552 261 37 65 chr15 35805585 35805800 -49889954 + MIR SINE MIR 48 256 -6 2165 96 14 0 chr15 35806703 35806985 -49888769 + AluSc SINE Alu 3 288 -21 230 164 18 0 chr15 35807957 35808012 -49887742 + GA-rich Low_complexity Low_complexity 2 57 0 1232 201 5 9 chr15 35808573 35808787 -49886967 + MER20 DNA MER1_type 7 219 0 399 21 0 0 chr15 35808979 35809027 -49886727 + (CA)n Simple_repeat Simple_repeat 2 49 0 1913 106 0 25 chr15 35809224 35809498 -49886256 + AluSx SINE Alu 41 307 -5 282 56 0 0 chr15 35809498 35809534 -49886220 + (GA)n Simple_repeat Simple_repeat 1 36 0 233 229 0 0 chr15 35809770 35809818 -49885936 + L1ME LINE L1 5782 5829 -292 338 273 83 0 chr15 35809835 35809956 -49885798 + L2 LINE L2 3182 3312 -1 204 40 0 0 chr15 35810537 35810562 -49885192 + (GA)n Simple_repeat Simple_repeat 2 26 0 204 277 0 15 chr15 35810882 35810947 -49884807 + GA-rich Low_complexity Low_complexity 1 64 0 1681 271 71 21 chr15 35811398 35811918 -49883836 + MLT1H1 LTR MaLR 1 546 -9 441 305 37 24 chr15 35812063 35812227 -49883527 + MIR SINE MIR 45 210 -52 294 29 0 0 chr15 35813484 35813519 -49882235 + (GA)n Simple_repeat Simple_repeat 1 35 0 330 169 0 0 chr15 35814799 35814864 -49880890 + (CA)n Simple_repeat Simple_repeat 1 65 0 201 224 61 0 chr15 35815621 35815670 -49880084 - MIR3 SINE MIR -47 161 110 330 273 172 8 chr15 35816505 35816633 -49879121 - MIR3 SINE MIR -6 202 54 257 236 18 0 chr15 35817614 35817669 -49878085 + (TG)n Simple_repeat Simple_repeat 1 56 0 243 333 71 37 chr15 35818006 35818300 -49877454 + L2 LINE L2 2809 3112 -160 399 261 28 35 chr15 35818320 35818462 -49877292 + MER117 DNA MER1_type 5 145 -52 353 309 8 8 chr15 35818498 35818621 -49877133 - MIR3 SINE MIR -52 156 34 22 0 0 0 chr15 35819944 35819966 -49875788 + AT_rich Low_complexity Low_complexity 1 22 0 552 333 5 11 chr15 35820113 35820302 -49875452 - MIR3 SINE MIR -1 207 20 868 165 34 6 chr15 35820942 35821118 -49874636 - MER5A DNA MER1_type -8 181 1 29 0 0 0 chr15 35821966 35821995 -49873759 + AT_rich Low_complexity Low_complexity 1 29 0 21 104 0 0 chr15 35823385 35823462 -49872292 + AT_rich Low_complexity Low_complexity 1 77 0 1205 160 51 68 chr15 35824767 35825061 -49870693 + AluJb SINE Alu 2 290 -12 29 0 0 0 chr15 35825170 35825199 -49870555 + AT_rich Low_complexity Low_complexity 1 29 0 2840 16 0 0 chr15 35825424 35825733 -49870021 - AluY SINE Alu -2 309 1 1804 130 42 88 chr15 35826063 35826295 -49869459 + LTR23 LTR ERV1 1 242 -225 2227 72 41 10 chr15 35826295 35826587 -49869167 - AluSq SINE Alu -12 301 1 1804 130 42 88 chr15 35826587 35826599 -49869155 + LTR23 LTR ERV1 242 253 -214 1631 136 0 124 chr15 35826599 35826797 -49868957 - AluJo SINE Alu -13 289 147 2134 87 0 37 chr15 35826797 35827096 -49868658 - AluSc SINE Alu -21 288 1 1631 136 0 124 chr15 35827096 35827227 -49868527 - AluJo SINE Alu -155 147 1 1804 130 42 88 chr15 35827227 35827437 -49868317 + LTR23 LTR ERV1 253 467 0 242 231 167 26 chr15 35827872 35827950 -49867804 + MIR SINE MIR 59 147 -115 453 283 61 24 chr15 35828484 35828696 -49867058 + MIR SINE MIR 31 250 -12 203 269 77 88 chr15 35831237 35831419 -49864335 - L2 LINE L2 -375 2939 2760 417 321 75 25 chr15 35831575 35831815 -49863939 + MER102a DNA MER1_type 71 322 -8 1965 137 3 13 chr15 35831843 35832171 -49863583 - AluSx SINE Alu 0 325 1 536 168 37 10 chr15 35832426 35832587 -49863167 - MER20 DNA MER1_type 0 219 1 1339 160 38 53 chr15 35833639 35833902 -49861852 + AluJo SINE Alu 47 305 -7 1680 175 21 3 chr15 35834796 35834951 -49860803 - AluJb SINE Alu -21 291 127 213 39 0 0 chr15 35834951 35834977 -49860777 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1680 175 21 3 chr15 35834977 35835107 -49860647 - AluJb SINE Alu -185 127 1 451 298 41 7 chr15 35835218 35835385 -49860369 + MIR3 SINE MIR 6 180 -28 295 305 156 0 chr15 35836050 35836204 -49859550 + MIR3 SINE MIR 20 197 -11 234 214 135 34 chr15 35837058 35837147 -49858607 - MIR SINE MIR -21 241 144 452 284 32 56 chr15 35838179 35838429 -49857325 + L2 LINE L2 3006 3249 -23 395 260 188 7 chr15 35838631 35838785 -49856969 + MIR SINE MIR 69 250 -12 664 280 20 30 chr15 35839093 35839327 -49856427 - MIR SINE MIR -12 250 19 323 206 176 0 chr15 35840029 35840131 -49855623 - L1ME3A LINE L1 -5 6165 6046 6668 194 36 23 chr15 35841765 35841819 -49853935 - Charlie1a DNA MER1_type -1311 1450 1398 2443 93 0 0 chr15 35841819 35842120 -49853634 + AluSx SINE Alu 1 301 -11 6668 194 36 23 chr15 35842120 35843223 -49852531 - Charlie1a DNA MER1_type -1363 1398 268 2429 74 0 13 chr15 35843223 35843522 -49852232 - AluY SINE Alu -14 297 3 6668 194 36 23 chr15 35843522 35843793 -49851961 - Charlie1a DNA MER1_type -2493 268 2 21 0 0 0 chr15 35846610 35846631 -49849123 + AT_rich Low_complexity Low_complexity 1 21 0 304 316 115 0 chr15 35846848 35846987 -49848767 - MIR3 SINE MIR -11 197 43 304 331 13 53 chr15 35847102 35847253 -49848501 + MER5B DNA MER1_type 29 173 -5 216 309 60 60 chr15 35847380 35847529 -49848225 + L2 LINE L2 3127 3275 -38 230 296 41 10 chr15 35847655 35847753 -49848001 + L2 LINE L2 3190 3290 -23 239 302 45 56 chr15 35848345 35848524 -49847230 + MER5B DNA MER1_type 1 177 -1 404 224 78 56 chr15 35848579 35848758 -49846996 + MER5A DNA MER1_type 7 189 0 184 189 81 0 chr15 35849086 35849123 -49846631 + L2 LINE L2 3265 3304 -9 728 370 71 6 chr15 35850749 35850918 -49844836 + L3 LINE CR1 1054 1211 -366 243 88 0 0 chr15 35850918 35850952 -49844802 + (TG)n Simple_repeat Simple_repeat 2 35 0 728 370 71 6 chr15 35850952 35851261 -49844493 + L3 LINE CR1 1211 1563 -14 183 197 66 16 chr15 35851982 35852043 -49843711 + MIR3 SINE MIR 108 171 -37 435 38 0 0 chr15 35852904 35852957 -49842797 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 330 87 0 0 chr15 35854630 35854676 -49841078 + (TC)n Simple_repeat Simple_repeat 1 46 0 24 0 0 0 chr15 35855764 35855788 -49839966 + GC_rich Low_complexity Low_complexity 1 24 0 30 59 0 0 chr15 35856804 35856855 -49838899 + GC_rich Low_complexity Low_complexity 1 51 0 242 210 16 0 chr15 35856940 35857002 -49838752 + (CCG)n Simple_repeat Simple_repeat 2 64 0 35 24 0 0 chr15 35857260 35857302 -49838452 + GC_rich Low_complexity Low_complexity 1 42 0 30 75 0 0 chr15 35857334 35857387 -49838367 + GC_rich Low_complexity Low_complexity 1 53 0 2083 123 26 13 chr15 35860179 35860481 -49835273 + AluSx SINE Alu 1 306 -6 226 333 19 0 chr15 35861641 35861749 -49834005 + (CATATA)n Simple_repeat Simple_repeat 3 112 0 1128 52 0 15 chr15 35862376 35862512 -49833242 - AluSp/q SINE Alu -16 297 164 1189 115 0 0 chr15 35863025 35863190 -49832564 - AluSg/x SINE Alu -4 306 142 2310 82 0 3 chr15 35863304 35863607 -49832147 - AluY SINE Alu -9 302 1 618 150 10 0 chr15 35864864 35864964 -49830790 + AluSg/x SINE Alu 197 297 -15 1272 227 34 70 chr15 35864972 35865152 -49830602 + L1MC4 LINE L1 6535 6720 -1322 1893 97 71 11 chr15 35865152 35865296 -49830458 - AluSp SINE Alu -30 283 149 234 0 0 0 chr15 35865296 35865322 -49830432 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1893 97 71 11 chr15 35865322 35865444 -49830310 - AluSp SINE Alu -164 149 1 2063 124 7 7 chr15 35865445 35865735 -49830019 - AluSx SINE Alu -22 290 1 1272 227 34 70 chr15 35865735 35865936 -49829818 + L1MC4 LINE L1 6719 6904 -1138 1120 171 0 0 chr15 35865942 35866112 -49829642 + FRAM SINE Alu 2 171 -5 1643 108 0 0 chr15 35866113 35866327 -49829427 + AluSc SINE Alu 83 296 -13 1478 143 0 22 chr15 35866356 35866586 -49829168 + AluJo SINE Alu 12 236 -76 2149 107 3 3 chr15 35866686 35866975 -49828779 - AluSx SINE Alu -23 289 1 482 117 0 64 chr15 35866980 35867074 -49828680 - FLAM_A SINE Alu -1 141 54 647 165 37 0 chr15 35867093 35867202 -49828552 - FLAM_C SINE Alu -19 124 12 2269 83 0 20 chr15 35867291 35867593 -49828161 + AluY SINE Alu 1 296 -15 1272 220 11 7 chr15 35867958 35868231 -49827523 - AluJb SINE Alu -11 301 28 201 276 105 13 chr15 35868996 35869072 -49826682 - MER5B DNA MER1_type -6 172 90 420 299 49 0 chr15 35869361 35869505 -49826249 - MIR3 SINE MIR -24 184 34 357 314 83 30 chr15 35871476 35871645 -49824109 - MER5A DNA MER1_type -2 187 10 229 296 37 12 chr15 35872194 35872275 -49823479 + MIR SINE MIR 109 191 -71 681 260 117 36 chr15 35872463 35872848 -49822906 - L1ME4a LINE L1 -27 6094 5679 6563 71 20 33 chr15 35872865 35873853 -49821901 - SVA Other Other 0 1386 433 4110 62 28 2 chr15 35873902 35874434 -49821320 - SVA Other Other -645 741 196 2119 94 56 14 chr15 35874536 35874824 -49820930 + AluSp SINE Alu 4 303 -10 2188 119 0 16 chr15 35874876 35875187 -49820567 + AluSx SINE Alu 7 312 0 21 36 0 0 chr15 35875333 35875361 -49820393 + AT_rich Low_complexity Low_complexity 1 28 0 2394 66 7 3 chr15 35875530 35875832 -49819922 - AluSc SINE Alu -6 303 1 1851 183 0 3 chr15 35877013 35877324 -49818430 - AluJo SINE Alu -2 310 1 215 270 0 40 chr15 35878005 35878079 -49817675 - MIR3 SINE MIR -17 191 121 1394 216 11 4 chr15 35878439 35878708 -49817046 - AluJo SINE Alu -35 277 7 640 207 129 0 chr15 35880029 35880169 -49815585 - MER5A DNA MER1_type -28 161 4 3694 190 107 16 chr15 35880408 35881044 -49814710 + Tigger6a DNA MER2_type 2 810 -787 2159 125 0 6 chr15 35881044 35881356 -49814398 + AluSx SINE Alu 1 310 -2 3694 190 107 16 chr15 35881356 35881657 -49814097 + Tigger6a DNA MER2_type 810 1082 -1 266 264 28 0 chr15 35881660 35881732 -49814022 + (TATG)n Simple_repeat Simple_repeat 3 76 0 1692 176 0 34 chr15 35882765 35883083 -49812671 + AluSx SINE Alu 1 308 0 1028 85 0 0 chr15 35883094 35883223 -49812531 + AluSq/x SINE Alu 1 129 -184 268 320 88 17 chr15 35883459 35883640 -49812114 + L2 LINE L2 3120 3313 0 1253 178 27 66 chr15 35883923 35884264 -49811490 - MER65A LTR ERV1 0 445 53 2612 84 22 3 chr15 35884264 35884634 -49811120 - L1PA10 LINE L1 -3 6165 5789 1253 178 27 66 chr15 35884634 35884686 -49811068 - MER65A LTR ERV1 -392 53 1 21 71 0 0 chr15 35885694 35885736 -49810018 + AT_rich Low_complexity Low_complexity 1 42 0 390 279 40 45 chr15 35885945 35886146 -49809608 - L1ME LINE L1 -374 5747 5548 305 258 30 9 chr15 35886277 35886454 -49809300 - L1ME LINE L1 -741 5429 5295 1739 103 117 32 chr15 35886465 35886746 -49809008 + AluSq SINE Alu 1 305 -8 2291 110 0 3 chr15 35887676 35887984 -49807770 + AluSx SINE Alu 1 307 -5 406 127 0 0 chr15 35888090 35888161 -49807593 + L1MB2 LINE L1 6070 6140 -31 1629 188 37 20 chr15 35888243 35888541 -49807213 + AluJb SINE Alu 3 305 -7 1061 196 71 5 chr15 35888745 35888969 -49806785 - AluJo SINE Alu -51 261 23 458 293 155 55 chr15 35888969 35889469 -49806285 + L2 LINE L2 2754 3309 -4 346 324 17 74 chr15 35889632 35889808 -49805946 - L1ME3A LINE L1 -1 6169 6004 2093 114 13 7 chr15 35889937 35890235 -49805519 - AluSq SINE Alu -13 300 1 717 239 125 11 chr15 35890237 35890509 -49805245 - L1ME3A LINE L1 -223 5947 5645 920 194 107 0 chr15 35890509 35890725 -49805029 - Tigger5 DNA MER2_type 0 2323 2085 272 222 0 16 chr15 35890746 35890809 -49804945 - Tigger5 DNA MER2_type -2261 62 1 636 157 20 68 chr15 35890809 35890956 -49804798 - L1ME3A LINE L1 -524 5646 5507 201 132 0 0 chr15 35890980 35891018 -49804736 + (GA)n Simple_repeat Simple_repeat 2 39 0 364 191 21 0 chr15 35891174 35891268 -49804486 - L1MA8 LINE L1 -4 6287 6192 233 383 0 12 chr15 35891368 35891449 -49804305 + polypurine Low_complexity Low_complexity 3 82 0 1519 148 88 31 chr15 35892256 35892608 -49803146 + THE1C LTR MaLR 1 372 -3 249 240 173 0 chr15 35892904 35892979 -49802775 - L2 LINE L2 -1 3271 3184 1851 154 14 3 chr15 35893118 35893410 -49802344 - AluJb SINE Alu -2 310 16 306 222 89 11 chr15 35893459 35893549 -49802205 - L1ME4a LINE L1 -4 6117 6021 937 204 0 0 chr15 35894495 35894662 -49801092 - FAM SINE Alu -12 173 7 427 257 29 0 chr15 35896037 35896142 -49799612 + MIR SINE MIR 141 248 -14 21 0 0 0 chr15 35896970 35896991 -49798763 + AT_rich Low_complexity Low_complexity 1 21 0 2347 105 0 7 chr15 35897396 35897700 -49798054 + AluSg SINE Alu 1 302 -8 2259 104 3 0 chr15 35897723 35898022 -49797732 + AluSx SINE Alu 1 300 -12 308 205 193 0 chr15 35898483 35898566 -49797188 - MIR SINE MIR -115 147 49 780 187 13 19 chr15 35898662 35898817 -49796937 - FRAM SINE Alu -30 146 1 2885 169 125 85 chr15 35898818 35899407 -49796347 - L1MC3 LINE L1 -6 7779 7215 271 197 30 15 chr15 35899407 35899473 -49796281 - MLT1F1 LTR MaLR -456 111 45 2885 169 125 85 chr15 35899473 35899701 -49796053 - L1MC3 LINE L1 -570 7215 6998 297 0 0 0 chr15 35899701 35899734 -49796020 + (TG)n Simple_repeat Simple_repeat 1 33 0 * 357 24 0 0 chr15 35899733 35899775 -49795979 + (GA)n Simple_repeat Simple_repeat 1 42 0 2885 169 125 85 chr15 35899734 35899822 -49795932 - L1MC3 LINE L1 -787 6998 6812 240 59 0 0 chr15 35899822 35899856 -49795898 + (GA)n Simple_repeat Simple_repeat 1 34 0 368 115 0 16 chr15 35899857 35899918 -49795836 - L1MC3 LINE L1 -929 6856 6797 15677 66 16 1 chr15 35899929 35902716 -49793038 - L1PA6 LINE L1 -1 6153 3281 820 175 103 8 chr15 35902823 35903075 -49792679 - L1MA8 LINE L1 -22 6269 5994 * 1011 229 112 35 chr15 35903073 35903635 -49792119 - L1MC5 LINE L1 -737 7224 6633 23 78 0 0 chr15 35903867 35903918 -49791836 + AT_rich Low_complexity Low_complexity 1 51 0 515 230 132 12 chr15 35903934 35904191 -49791563 - L1M4 LINE L1 -788 5358 5071 697 182 44 25 chr15 35904268 35904427 -49791327 + MER20 DNA MER1_type 57 218 -1 750 206 61 93 chr15 35904429 35904571 -49791183 - L1M4 LINE L1 -1104 5042 4897 941 200 118 0 chr15 35904571 35904766 -49790988 + MER20 DNA MER1_type 2 219 0 750 206 61 93 chr15 35904766 35904840 -49790914 - L1M4 LINE L1 -1249 4897 4822 1946 115 7 17 chr15 35904840 35905135 -49790619 - AluSx SINE Alu -20 292 1 750 206 61 93 chr15 35905135 35905228 -49790526 - L1M4 LINE L1 -1324 4822 4742 322 158 0 0 chr15 35905238 35905295 -49790459 - L1M4 LINE L1 -1474 4672 4616 305 335 96 30 chr15 35905384 35905685 -49790069 - L1MEc LINE L1 -4162 2234 1914 442 316 154 33 chr15 35905726 35906214 -49789540 - L1MEc LINE L1 -4573 1823 1277 2930 135 36 2 chr15 35906214 35906589 -49789165 - L1MB3 LINE L1 -8 6175 5777 222 91 0 0 chr15 35906589 35906622 -49789132 + (TG)n Simple_repeat Simple_repeat 2 34 0 2930 135 36 2 chr15 35906622 35906742 -49789012 - L1MB3 LINE L1 -406 5777 5663 21 36 0 0 chr15 35907123 35907151 -49788603 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr15 35908736 35908762 -49786992 + (TG)n Simple_repeat Simple_repeat 2 27 0 2077 130 16 3 chr15 35908779 35909086 -49786668 - AluSq SINE Alu -2 311 1 2084 150 0 0 chr15 35909428 35909722 -49786032 + AluSx SINE Alu 1 294 -18 1958 82 0 7 chr15 35910391 35910660 -49785094 + L1PA8 LINE L1 5906 6172 0 516 314 99 0 chr15 35911824 35912015 -49783739 + MIR SINE MIR 8 217 -45 2093 132 0 3 chr15 35912102 35912397 -49783357 - AluSx SINE Alu -18 294 1 800 209 79 0 chr15 35912489 35912666 -49783088 + MIR SINE MIR 72 262 0 571 279 146 17 chr15 35912726 35913013 -49782741 - L2 LINE L2 0 3313 2990 21 0 0 0 chr15 35913013 35913034 -49782720 + AT_rich Low_complexity Low_complexity 1 21 0 321 284 71 24 chr15 35913288 35913415 -49782339 + L1MEd LINE L1 3 135 -5984 521 279 17 41 chr15 35914497 35914669 -49781085 - MIR SINE MIR -5 257 90 2165 135 22 8 chr15 35917603 35917958 -49777796 + MER46B DNA MER2_type 1 235 -1 2331 87 0 0 chr15 35918651 35918940 -49776814 + AluY SINE Alu 1 289 -22 2035 130 7 7 chr15 35920361 35920653 -49775101 + AluSq SINE Alu 1 292 -21 28 29 0 0 chr15 35921125 35921160 -49774594 + AT_rich Low_complexity Low_complexity 1 35 0 194 302 0 0 chr15 35921219 35921262 -49774492 + MIR SINE MIR 59 101 -161 1687 178 3 43 chr15 35921269 35921573 -49774181 - AluJo SINE Alu -20 292 1 266 200 271 14 chr15 35921741 35921811 -49773943 + MER5A DNA MER1_type 9 96 -93 23 0 0 29 chr15 35923324 35923340 -49772414 + AT_rich Low_complexity Low_complexity 1 16 -17 2072 114 3 7 chr15 35923340 35923629 -49772125 - AluSx SINE Alu -24 288 1 23 0 0 29 chr15 35923629 35923646 -49772108 + AT_rich Low_complexity Low_complexity 16 33 0 1330 106 0 30 chr15 35923855 35924053 -49771701 - AluY SINE Alu -6 305 114 1914 156 16 0 chr15 35924599 35924906 -49770848 - AluJb SINE Alu 0 312 1 2367 94 3 0 chr15 35924983 35925282 -49770472 - AluSp SINE Alu -13 300 1 2337 53 7 0 chr15 35925293 35925598 -49770156 - AluY SINE Alu 0 307 1 2116 161 99 4 chr15 35925600 35926032 -49769722 - L1MA4 LINE L1 -44 6256 5776 423 0 0 0 chr15 35926032 35926079 -49769675 + (TG)n Simple_repeat Simple_repeat 2 48 0 2116 161 99 4 chr15 35926079 35926111 -49769643 - L1MA4 LINE L1 -524 5776 5748 279 225 133 33 chr15 35926406 35926526 -49769228 - MIR SINE MIR -64 198 67 2207 111 7 0 chr15 35926809 35927107 -49768647 + AluSq SINE Alu 1 300 -13 192 77 0 0 chr15 35927107 35927133 -49768621 + (GA)n Simple_repeat Simple_repeat 1 26 0 2391 57 3 10 chr15 35927214 35927512 -49768242 + AluY SINE Alu 1 296 -15 2024 116 3 0 chr15 35927704 35927988 -49767766 - AluY SINE Alu -26 285 1 2222 109 0 19 chr15 35928109 35928422 -49767332 + AluSx SINE Alu 1 307 -5 23 54 0 0 chr15 35928422 35928459 -49767295 + AT_rich Low_complexity Low_complexity 1 37 0 2019 220 44 24 chr15 35928882 35929377 -49766377 - MLT1D LTR MaLR 0 505 1 2170 92 10 7 chr15 35929427 35929719 -49766035 + AluSg SINE Alu 1 293 -17 290 306 0 0 chr15 35929922 35930007 -49765747 + MIR3 SINE MIR 121 205 -3 1561 185 112 62 chr15 35930115 35930596 -49765158 - MLT1D LTR MaLR 0 505 1 416 328 119 4 chr15 35931158 35931393 -49764361 + MIR SINE MIR 1 262 0 1402 159 16 118 chr15 35932585 35932949 -49762805 - MER7A DNA MER2_type -1 345 21 2125 109 10 7 chr15 35934310 35934604 -49761150 + AluSx SINE Alu 1 295 -17 239 247 5 93 chr15 35934717 35934934 -49760820 + CT-rich Low_complexity Low_complexity 1 197 0 2199 111 0 13 chr15 35936263 35936561 -49759193 - AluSg SINE Alu -16 294 1 1854 156 28 0 chr15 35936690 35936979 -49758775 + AluJb SINE Alu 1 297 -15 977 123 0 0 chr15 35937959 35938089 -49757665 + FRAM SINE Alu 23 152 -24 430 302 47 0 chr15 35938303 35938452 -49757302 + L2 LINE L2 3158 3313 0 753 151 220 25 chr15 35939201 35939360 -49756394 - MLT1F1 LTR MaLR 0 567 378 353 134 256 12 chr15 35939360 35939442 -49756312 - MLT1F1 LTR MaLR -461 106 5 2454 63 0 0 chr15 35940170 35940457 -49755297 + AluY SINE Alu 1 287 -24 205 294 188 12 chr15 35941393 35941478 -49754276 - L2 LINE L2 -39 3233 3134 563 198 0 18 chr15 35941688 35941799 -49753955 + MER47A DNA MER2_type 11 119 -247 416 168 0 192 chr15 35941802 35941870 -49753884 + MER47A DNA MER2_type 266 301 -2022 525 260 31 0 chr15 35941870 35941997 -49753757 - FLAM_C SINE Alu -2 131 1 416 168 0 192 chr15 35941997 35942053 -49753701 + MER47A DNA MER2_type 301 366 0 1344 167 139 57 chr15 35942459 35942825 -49752929 + MSTD LTR MaLR 1 396 0 973 67 8 0 chr15 35942914 35943034 -49752720 + AluSq/x SINE Alu 3 123 -190 673 290 81 38 chr15 35943426 35943825 -49751929 - L1MC4a LINE L1 -218 5903 5464 278 290 69 47 chr15 35944032 35944376 -49751378 - L2 LINE L2 -185 3087 2661 183 244 0 0 chr15 35944514 35944555 -49751199 - L2 LINE L2 -8 3305 3265 2383 96 0 7 chr15 35944642 35944945 -49750809 - AluSc SINE Alu -7 302 2 2338 88 0 10 chr15 35945357 35945664 -49750090 - AluY SINE Alu -7 304 1 424 257 0 0 chr15 35945759 35945833 -49749921 + MER58 DNA MER1_type 1 74 -312 466 258 196 38 chr15 35945957 35946166 -49749588 + MLT1G1 LTR MaLR 309 590 -5 1493 191 7 14 chr15 35946254 35946531 -49749223 + AluJo SINE Alu 1 275 -37 240 254 15 0 chr15 35946562 35946629 -49749125 + MIR3 SINE MIR 138 205 -3 197 247 22 90 chr15 35946643 35946732 -49749022 - L2 LINE L2 -6 3266 3184 306 0 0 0 chr15 35947798 35947832 -49747922 + (CA)n Simple_repeat Simple_repeat 2 35 0 216 0 0 0 chr15 35947891 35947915 -49747839 + (CA)n Simple_repeat Simple_repeat 2 25 0 301 40 0 122 chr15 35947975 35948049 -49747705 + (TC)n Simple_repeat Simple_repeat 1 65 0 326 23 23 0 chr15 35948108 35948151 -49747603 + (CA)n Simple_repeat Simple_repeat 2 45 0 468 0 0 0 chr15 35948207 35948259 -49747495 + (CA)n Simple_repeat Simple_repeat 2 53 0 225 0 0 0 chr15 35948654 35948679 -49747075 + (A)n Simple_repeat Simple_repeat 1 25 0 189 0 0 0 chr15 35948969 35948990 -49746764 + (CGGGG)n Simple_repeat Simple_repeat 2 22 0 429 191 181 0 chr15 35950815 35950920 -49744834 + FLAM_A SINE Alu 2 125 -8 412 215 31 92 chr15 35951666 35951829 -49743925 - L2 LINE L2 -3 3310 3158 2162 129 0 0 chr15 35952308 35952617 -49743137 - AluSx SINE Alu -3 309 1 220 224 0 35 chr15 35953169 35953227 -49742527 - L2 LINE L2 -23 3290 3235 189 0 0 0 chr15 35954070 35954091 -49741663 + (T)n Simple_repeat Simple_repeat 1 21 0 476 56 125 14 chr15 35954650 35954722 -49741032 - MADE1 DNA Mariner 0 80 1 248 319 0 21 chr15 35955787 35955881 -49739873 + MIR3 SINE MIR 9 100 -108 183 129 0 0 chr15 35956266 35956297 -49739457 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1348 120 32 23 chr15 35958080 35958297 -49737457 + AluJo SINE Alu 86 304 -8 802 161 0 35 chr15 35958303 35958446 -49737308 + FLAM_C SINE Alu 6 143 0 490 132 40 0 chr15 35958577 35958653 -49737101 + AluJo SINE Alu 58 136 -176 804 192 6 1 chr15 35958655 35958813 -49736941 - MER33 DNA MER1_type -250 74 1 2340 75 7 0 chr15 35958831 35959125 -49736629 - AluSq SINE Alu -17 296 1 1385 177 121 0 chr15 35959136 35959468 -49736286 - L1MC1 LINE L1 -18 6315 5917 2301 106 0 6 chr15 35961053 35961364 -49734390 - AluSc SINE Alu 0 309 1 1812 148 7 14 chr15 35963221 35963531 -49732223 + AluJb SINE Alu 1 308 0 644 168 11 28 chr15 35964462 35964641 -49731113 + CT-rich Low_complexity Low_complexity 1 176 0 440 157 112 0 chr15 35965506 35965595 -49730159 - MER94 DNA DNA -34 100 2 2240 109 3 3 chr15 35965824 35966128 -49729626 - AluSp SINE Alu -9 304 1 186 43 0 0 chr15 35966133 35966156 -49729598 + (T)n Simple_repeat Simple_repeat 1 23 0 497 304 138 18 chr15 35966248 35966472 -49729282 + MIR SINE MIR 2 252 -10 204 200 0 0 chr15 35966480 35966525 -49729229 + (CA)n Simple_repeat Simple_repeat 2 46 0 2371 100 0 0 chr15 35967342 35967651 -49728103 - AluSg1 SINE Alu 0 309 1 201 94 0 0 chr15 35967651 35967683 -49728071 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 2080 124 3 0 chr15 35967684 35967966 -49727788 - AluSx SINE Alu -29 283 1 538 208 0 17 chr15 35968313 35968433 -49727321 - L1MB8 LINE L1 -1 6177 6060 2007 115 0 47 chr15 35968532 35968828 -49726926 - AluSx SINE Alu -14 298 17 392 235 12 0 chr15 35968896 35968977 -49726777 + Tigger1 DNA MER2_type 1 82 -2336 1122 102 102 10 chr15 35969001 35969197 -49726557 + Tigger1 DNA MER2_type 2205 2418 0 249 144 10 144 chr15 35969201 35969305 -49726449 + L1ME4a LINE L1 6021 6110 -11 2332 80 7 13 chr15 35970252 35970553 -49725201 - AluSp SINE Alu -14 299 1 245 325 17 26 chr15 35972862 35972979 -49722775 - MIR SINE MIR -66 196 81 1278 214 119 49 chr15 35973535 35973694 -49722060 - LTR37B LTR ERV1 0 468 322 1375 149 168 19 chr15 35973694 35973956 -49721798 + AluJo SINE Alu 1 301 -1 1278 214 119 49 chr15 35973956 35974225 -49721529 - LTR37B LTR ERV1 -146 322 10 537 284 31 10 chr15 35974277 35974471 -49721283 + MIR SINE MIR 51 248 -14 2147 100 11 0 chr15 35974474 35974778 -49720976 - AluSp SINE Alu 0 308 2 28 29 0 0 chr15 35975939 35975974 -49719780 + AT_rich Low_complexity Low_complexity 1 35 0 1041 142 0 6 chr15 35976889 35977062 -49718692 - Charlie3 DNA MER1_type -2431 279 115 389 236 0 0 chr15 35977151 35977240 -49718514 - MIR SINE MIR 0 262 174 866 193 30 0 chr15 35978067 35978233 -49717521 - AluSg/x SINE Alu -2 310 140 243 264 0 0 chr15 35979177 35979230 -49716524 + A-rich Low_complexity Low_complexity 3 55 0 2395 64 7 0 chr15 35980842 35981149 -49714605 - AluSp SINE Alu 0 309 1 2461 74 0 3 chr15 35983317 35983613 -49712141 - AluY SINE Alu -16 295 1 721 112 0 45 chr15 35984466 35984600 -49711154 - L1MA4 LINE L1 0 6300 6173 2086 93 69 3 chr15 35985838 35986128 -49709626 - AluSc SINE Alu 0 309 1 1982 201 54 14 chr15 35986395 35986913 -49708841 - MLT1F LTR MaLR -5 537 1 25 65 0 0 chr15 35987313 35987359 -49708395 + AT_rich Low_complexity Low_complexity 1 46 0 209 200 20 0 chr15 35990148 35990198 -49705556 + L2 LINE L2 3256 3306 -7 548 88 7 95 chr15 35990403 35990707 -49705047 + (TCCC)n Simple_repeat Simple_repeat 1 277 0 350 126 92 0 chr15 35990707 35990794 -49704960 + (CCTG)n Simple_repeat Simple_repeat 2 96 0 471 233 20 0 chr15 35990798 35990948 -49704806 + CT-rich Low_complexity Low_complexity 1 153 0 781 116 0 9 chr15 35990955 35991067 -49704687 - L1PB1 LINE L1 -13 6138 6028 1903 130 84 3 chr15 35991067 35991390 -49704364 - MER46B DNA MER2_type -12 224 1 2515 59 0 7 chr15 35991882 35992187 -49703567 - AluY SINE Alu -8 303 1 618 207 195 17 chr15 35993418 35993473 -49702281 - MER3 DNA MER1_type 0 209 165 195 42 0 0 chr15 35993473 35993497 -49702257 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 618 207 195 17 chr15 35993497 35993615 -49702139 - MER3 DNA MER1_type -44 165 5 400 252 39 19 chr15 35995435 35995538 -49700216 - MER91C DNA MER1_type -35 105 1 1678 96 0 8 chr15 35996850 35997067 -49698687 - L1P LINE L1 -4105 2041 1825 1902 159 0 0 chr15 35997067 35997350 -49698404 - AluSx SINE Alu -29 283 1 1678 96 0 8 chr15 35997350 35997372 -49698382 - L1P LINE L1 -4321 1825 1804 * 2819 186 19 45 chr15 35997351 35997775 -49697979 - L1MC2 LINE L1 -493 5851 5418 2244 125 0 0 chr15 35997775 35998087 -49697667 - AluSx SINE Alu 0 312 1 2819 186 19 45 chr15 35998087 35998545 -49697209 - L1MC2 LINE L1 -926 5418 4999 1838 144 26 30 chr15 35998545 35998850 -49696904 - AluSx SINE Alu -8 304 1 2819 186 19 45 chr15 35998850 35998948 -49696806 - L1MC2 LINE L1 -1345 4999 4900 201 250 0 0 chr15 36000375 36000411 -49695343 + T-rich Low_complexity Low_complexity 3 38 0 402 141 40 10 chr15 36000429 36000528 -49695226 + CT-rich Low_complexity Low_complexity 2 103 0 2005 132 0 0 chr15 36000528 36000801 -49694953 - AluSx SINE Alu -39 273 1 207 306 0 0 chr15 36000812 36000874 -49694880 + MIR3 SINE MIR 126 187 -21 191 32 65 0 chr15 36002060 36002091 -49693663 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2107 113 0 3 chr15 36005342 36005626 -49690128 + AluSx SINE Alu 1 283 -29 290 278 11 0 chr15 36005650 36005740 -49690014 - MIR3 SINE MIR -30 178 88 * 472 238 245 0 chr15 36005738 36005885 -49689869 + MER5A DNA MER1_type 7 189 0 857 246 66 8 chr15 36006090 36006346 -49689408 + L1ME LINE L1 5553 5823 -298 252 159 0 0 chr15 36006346 36006388 -49689366 + AluJo SINE Alu 1 35 -268 249 208 83 0 chr15 36006419 36006491 -49689263 - L1M1 LINE L1 -7471 94 17 1301 181 0 62 chr15 36006497 36006756 -49688998 + AluJo SINE Alu 29 271 -41 1521 184 17 0 chr15 36006805 36007093 -49688661 - L1PB4 LINE L1 0 6156 5864 389 324 90 0 chr15 36007475 36007620 -49688134 + L2 LINE L2 3115 3272 0 234 0 0 0 chr15 36008954 36008980 -49686774 + (TCCCC)n Simple_repeat Simple_repeat 3 28 0 715 197 0 0 chr15 36008980 36009112 -49686642 - FRAM SINE Alu -10 166 35 243 330 34 25 chr15 36009227 36009345 -49686409 + L2 LINE L2 3121 3239 -33 282 289 0 0 chr15 36009379 36009455 -49686299 - MIR SINE MIR -4 258 183 24 0 0 0 chr15 36009505 36009529 -49686225 + AT_rich Low_complexity Low_complexity 1 24 0 773 186 10 93 chr15 36010564 36010684 -49685070 - MER5A DNA MER1_type -2 187 59 2512 104 6 8 chr15 36010684 36011040 -49684714 + THE1A LTR MaLR 1 355 0 1918 138 10 10 chr15 36011047 36011337 -49684417 - AluJo SINE Alu -22 290 1 773 186 10 93 chr15 36011337 36011412 -49684342 - MER5A DNA MER1_type -136 53 1 636 171 264 0 chr15 36011772 36011912 -49683842 - MER45A DNA AcHobo 0 178 2 182 343 0 0 chr15 36012239 36012306 -49683448 - MIR SINE MIR -147 115 49 1932 148 45 34 chr15 36012371 36012728 -49683026 + THE1B LTR MaLR 1 361 -3 387 257 69 40 chr15 36013158 36013333 -49682421 + MIR SINE MIR 40 219 -43 726 200 27 0 chr15 36013681 36013831 -49681923 + L1 LINE L1 4109 4262 -1884 276 225 49 41 chr15 36014729 36014846 -49680908 + MIR SINE MIR 25 147 -62 525 187 0 0 chr15 36014992 36015131 -49680623 + CT-rich Low_complexity Low_complexity 3 141 0 529 135 208 0 chr15 36015133 36015229 -49680525 - FRAM SINE Alu -16 160 45 770 93 19 0 chr15 36015329 36015436 -49680318 + MSTA LTR MaLR 320 428 0 * 1462 169 0 16 chr15 36015436 36015677 -49680077 - MSTA LTR MaLR -191 237 1 2664 39 0 3 chr15 36016116 36016450 -49679304 + AluY SINE Alu 1 333 0 337 376 48 0 chr15 36016927 36017137 -49678617 + L2 LINE L2 2439 2658 -656 2295 87 10 0 chr15 36017498 36017798 -49677956 - AluSp SINE Alu -10 303 1 2768 86 0 23 chr15 36017813 36018198 -49677556 - L1PA6 LINE L1 -11 6143 5768 888 277 60 31 chr15 36018581 36018967 -49676787 - L1ME3A LINE L1 -219 5951 5555 275 326 11 0 chr15 36018967 36019059 -49676695 + L2 LINE L2 3175 3267 -5 2755 168 43 38 chr15 36019716 36019811 -49675943 - L1MD3 LINE L1 -12 7983 7890 2485 80 6 0 chr15 36019811 36020122 -49675632 - AluSp SINE Alu 0 313 1 2755 168 43 38 chr15 36020122 36020604 -49675150 - L1MD3 LINE L1 -105 7890 7403 703 197 0 0 chr15 36020606 36020728 -49675026 - MLT1F1 LTR MaLR -445 122 1 297 148 66 0 chr15 36020730 36020791 -49674963 - L1MD3 LINE L1 -719 7276 7212 588 313 78 9 chr15 36021529 36021759 -49673995 - LTR67 LTR ERVL -310 247 2 472 244 24 24 chr15 36021821 36021944 -49673810 - L2 LINE L2 0 3313 3191 4670 253 107 48 chr15 36021946 36022096 -49673658 + HAL1 LINE L1 229 369 -2138 1039 171 9 55 chr15 36022096 36022313 -49673441 + MER3 DNA MER1_type 3 209 0 4670 253 107 48 chr15 36022313 36022916 -49672838 + HAL1 LINE L1 369 935 -1572 2345 92 3 3 chr15 36022916 36023220 -49672534 + AluY SINE Alu 1 304 -7 4670 253 107 48 chr15 36023220 36023555 -49672199 + HAL1 LINE L1 935 1249 -1258 2538 133 62 5 chr15 36023555 36023960 -49671794 + MSTA LTR MaLR 1 428 0 4670 253 107 48 chr15 36023960 36024253 -49671501 + HAL1 LINE L1 1249 1523 -984 3392 84 0 22 chr15 36024253 36024707 -49671047 + MLT2A1 LTR ERVL 1 444 0 4670 253 107 48 chr15 36024707 36025322 -49670432 + HAL1 LINE L1 1523 2347 -160 5187 154 17 22 chr15 36025323 36026208 -49669546 + MER54A LTR ERVL 6 873 -28 901 205 0 0 chr15 36026210 36026371 -49669383 + FRAM SINE Alu 4 164 -2 343 67 0 0 chr15 36026404 36026449 -49669305 + MER54B LTR ERVL 749 793 0 443 230 142 27 chr15 36026450 36026598 -49669156 + HAL1 LINE L1 2343 2507 0 2363 76 0 13 chr15 36026705 36027006 -49668748 + AluY SINE Alu 1 297 -14 7756 27 5 0 chr15 36027070 36027997 -49667757 + L1PA3 LINE L1 5220 6150 -5 541 291 98 59 chr15 36028215 36028376 -49667378 + MLT1K LTR MaLR 113 266 -322 249 33 0 0 chr15 36028376 36028406 -49667348 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 541 291 98 59 chr15 36028406 36028687 -49667067 + MLT1K LTR MaLR 266 585 -3 342 78 94 0 chr15 36028756 36028820 -49666934 - L1MA5 LINE L1 -22 6278 6209 1801 153 17 10 chr15 36030528 36030823 -49664931 - AluJb SINE Alu -15 297 1 265 250 46 28 chr15 36031055 36031163 -49664591 + CT-rich Low_complexity Low_complexity 4 113 0 1659 191 10 0 chr15 36031685 36031978 -49663776 + AluJo SINE Alu 1 296 -16 381 322 11 57 chr15 36032032 36032209 -49663545 - L3 LINE CR1 -295 1282 1114 2072 135 0 0 chr15 36032371 36032659 -49663095 - AluSc SINE Alu -21 288 1 2094 147 0 0 chr15 36032671 36032977 -49662777 - AluSx SINE Alu -6 306 1 2798 85 6 0 chr15 36033035 36033387 -49662367 + THE1A LTR MaLR 2 355 0 12268 93 6 5 chr15 36033387 36034961 -49660793 + THE1A-int LTR MaLR 1 1576 -4 2872 82 8 0 chr15 36034964 36035316 -49660438 + THE1A LTR MaLR 1 355 0 199 344 10 10 chr15 36035770 36035866 -49659888 + MIR SINE MIR 153 248 -14 314 264 56 42 chr15 36036256 36036400 -49659354 + MIR SINE MIR 112 257 -5 249 33 0 0 chr15 36036759 36036789 -49658965 + (ATG)n Simple_repeat Simple_repeat 3 32 0 363 282 0 55 chr15 36036795 36036905 -49658849 - L2 LINE L2 -21 3251 3148 273 204 0 0 chr15 36036889 36036938 -49658816 + L2 LINE L2 3251 3299 -14 * 396 0 0 0 chr15 36037496 36037540 -49658214 + (TG)n Simple_repeat Simple_repeat 2 45 0 405 295 73 11 chr15 36038311 36038482 -49657272 + MIR SINE MIR 32 212 -50 592 207 101 71 chr15 36038505 36038674 -49657080 + MER69A DNA AcHobo 4 177 0 300 274 74 84 chr15 36039667 36039857 -49655897 - L1M2a LINE L1 -6459 709 522 1668 162 3 37 chr15 36040044 36040340 -49655414 - AluJb SINE Alu -12 300 15 875 241 30 5 chr15 36040638 36040837 -49654917 - MER63A DNA MER1_type 0 210 7 246 275 165 11 chr15 36040969 36041060 -49654694 - MIR SINE MIR 0 262 158 1350 148 0 0 chr15 36041076 36041279 -49654475 - AluSq SINE Alu -15 298 96 201 312 24 88 chr15 36041730 36041785 -49653969 + L2 LINE L2 3192 3249 -64 2406 74 0 7 chr15 36041785 36042084 -49653670 - AluY SINE Alu -14 297 1 201 312 24 88 chr15 36042084 36042153 -49653601 + L2 LINE L2 3249 3308 -5 29 28 0 0 chr15 36042224 36042260 -49653494 + AT_rich Low_complexity Low_complexity 1 36 0 2925 97 57 102 chr15 36043400 36044037 -49651717 + MER4B LTR ERV1 1 779 0 4132 140 34 24 chr15 36044482 36045183 -49650571 + MER50 LTR ERV1 1 708 -26 865 198 117 15 chr15 36046463 36046660 -49649094 - AluJo SINE Alu -11 301 85 381 138 17 0 chr15 36046660 36046718 -49649036 - AluSx SINE Alu -52 248 190 1066 110 0 14 chr15 36046719 36046864 -49648890 - AluSx SINE Alu -170 143 1 863 151 8 0 chr15 36047383 36047509 -49648245 - FLAM_C SINE Alu -16 127 1 194 54 0 54 chr15 36047518 36047555 -49648199 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 280 241 38 25 chr15 36048942 36049021 -49646733 - L2 LINE L2 0 3272 3193 778 236 140 36 chr15 36049513 36049848 -49645906 - L3 LINE CR1 -704 873 504 349 275 42 33 chr15 36050026 36050146 -49645608 + L2 LINE L2 2250 2370 -944 325 354 94 39 chr15 36050159 36050547 -49645207 + L2 LINE L2 2633 3046 -226 609 264 54 73 chr15 36050913 36051283 -49644471 + MLT1J LTR MaLR 1 323 -123 484 281 103 90 chr15 36051515 36052028 -49643726 - L1ME2 LINE L1 -279 5885 5366 28 19 0 56 chr15 36052050 36052104 -49643650 + AT_rich Low_complexity Low_complexity 1 51 0 4091 143 16 2 chr15 36052106 36052727 -49643027 - L1PA16 LINE L1 -14 6152 5523 782 85 19 0 chr15 36052744 36052850 -49642904 - L1PB1 LINE L1 -1 6150 6043 268 292 60 27 chr15 36052895 36053080 -49642674 - L1ME2 LINE L1 -891 5255 5065 309 208 26 13 chr15 36053100 36053177 -49642577 + L1MC2 LINE L1 6254 6331 -13 694 257 80 46 chr15 36053199 36053825 -49641929 + L1MEc LINE L1 966 1612 -4784 * 1822 162 16 38 chr15 36053809 36054180 -49641574 + L1MC2 LINE L1 5796 6158 -186 486 272 0 40 chr15 36054732 36054857 -49640897 - MER5B DNA MER1_type -3 175 56 2074 109 7 3 chr15 36054859 36055142 -49640612 - AluSx SINE Alu -28 284 1 263 279 163 41 chr15 36055228 36055400 -49640354 + MIR SINE MIR 13 205 -57 1996 141 12 29 chr15 36055537 36055889 -49639865 + MLT2A2 LTR ERVL 1 309 -144 16610 146 34 7 chr15 36055889 36057580 -49638174 + L1PBa LINE L1 378 2023 -4839 2360 103 0 0 chr15 36057580 36057890 -49637864 + AluSg SINE Alu 1 310 0 2384 100 3 0 chr15 36057895 36058204 -49637550 + AluSp SINE Alu 1 310 -3 16610 146 34 7 chr15 36058204 36060718 -49635036 + L1PBa LINE L1 2026 4700 -2162 805 163 58 41 chr15 36060827 36060999 -49634755 - AluJo SINE Alu -137 175 1 468 107 24 0 chr15 36061628 36061712 -49634042 - L1MB4 LINE L1 0 6180 6095 1966 134 0 3 chr15 36061760 36062080 -49633674 - AluSx SINE Alu 0 319 1 1114 282 19 39 chr15 36062429 36062841 -49632913 - MLT1I LTR MaLR -5 404 1 403 296 97 51 chr15 36062930 36063146 -49632608 - MIR SINE MIR -3 259 34 358 320 76 26 chr15 36064425 36064601 -49631153 - MIR SINE MIR -70 192 20 309 289 76 137 chr15 36064637 36064952 -49630802 - L2 LINE L2 -5 3267 2972 1482 154 80 25 chr15 36064961 36065247 -49630507 + AluJb SINE Alu 11 312 0 894 290 116 55 chr15 36065469 36065776 -49629978 - L2 LINE L2 -906 2408 2121 1921 153 3 0 chr15 36065776 36066064 -49629690 + AluSx SINE Alu 1 289 -23 894 290 116 55 chr15 36066064 36066483 -49629271 - L2 LINE L2 -1193 2121 1638 453 275 23 0 chr15 36066719 36066850 -49628904 - MIR SINE MIR -115 147 14 253 288 45 18 chr15 36068825 36068936 -49626818 - MIR SINE MIR -115 147 34 254 342 0 0 chr15 36069075 36069154 -49626600 + L3 LINE CR1 1046 1124 -453 189 318 79 117 chr15 36069387 36069427 -49626327 + L3 LINE CR1 1133 1173 -404 2287 116 40 83 chr15 36069427 36069580 -49626174 - MER57A LTR ERV1 0 403 245 1879 140 13 32 chr15 36069580 36069895 -49625859 + AluSx SINE Alu 1 309 -3 2287 116 40 83 chr15 36069895 36070162 -49625592 - MER57A LTR ERV1 -158 245 1 189 318 79 117 chr15 36070162 36070539 -49625215 + L3 LINE CR1 1173 1534 -43 2086 90 0 60 chr15 36070576 36070900 -49624854 + AluSx SINE Alu 1 306 0 1753 108 42 0 chr15 36070931 36071190 -49624564 - L1MA2 LINE L1 0 6304 6035 21 0 0 0 chr15 36071204 36071225 -49624529 + AT_rich Low_complexity Low_complexity 1 21 0 363 267 33 0 chr15 36072099 36072189 -49623565 + L2 LINE L2 3178 3270 -2 1556 90 0 5 chr15 36072751 36072952 -49622802 - L1PA7 LINE L1 -13 6141 5942 1280 236 41 16 chr15 36072984 36073463 -49622291 + MLT1E LTR MaLR 1 585 -8 405 232 36 9 chr15 36073834 36073946 -49621808 + MLT1I LTR MaLR 60 174 -235 2208 105 40 53 chr15 36074548 36074928 -49620826 + THE1C LTR MaLR 1 375 0 1065 210 73 86 chr15 36077160 36077531 -49618223 + MLT1A2 LTR MaLR 7 372 -2 845 269 144 41 chr15 36077532 36077970 -49617784 - HAL1 LINE L1 -1693 814 332 2334 96 7 0 chr15 36077972 36078265 -49617489 + AluSc SINE Alu 1 295 -14 278 276 97 67 chr15 36078421 36079134 -49616620 + L1MC4a LINE L1 4369 5102 -1044 1868 139 0 0 chr15 36079242 36079501 -49616253 + AluSx SINE Alu 24 282 -30 1296 239 84 106 chr15 36079634 36080486 -49615268 + L1MC4a LINE L1 5340 6173 -1635 303 226 48 0 chr15 36081077 36081161 -49614593 - L1ME4a LINE L1 -3 6118 6031 269 199 88 29 chr15 36081233 36081369 -49614385 - L1ME4a LINE L1 -238 5883 5740 5922 205 129 61 chr15 36081546 36084353 -49611401 - L1MCa LINE L1 -3396 3030 29 19621 73 11 8 chr15 36084680 36088184 -49607570 - L1PA6 LINE L1 0 6154 2640 18870 121 21 23 chr15 36088290 36091571 -49604183 - L1P LINE L1 -2861 3285 11 3908 188 31 4 chr15 36091774 36092536 -49603218 - LTR39 LTR ERV1 0 783 1 296 280 51 77 chr15 36094002 36094157 -49601597 - MIR SINE MIR -59 149 32 2256 129 7 0 chr15 36094840 36095149 -49600605 - AluSx SINE Alu -1 311 1 586 208 101 82 chr15 36095295 36095336 -49600418 - MER58C DNA MER1_type -2205 215 176 288 0 0 0 chr15 36095336 36095368 -49600386 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2079 99 0 38 chr15 36095374 36095667 -49600087 - AluSx SINE Alu -30 282 1 586 208 101 82 chr15 36095667 36095825 -49599929 - MER58C DNA MER1_type -2248 172 5 406 268 79 49 chr15 36096070 36096234 -49599520 + MIR SINE MIR 94 262 0 504 267 85 23 chr15 36096560 36096736 -49599018 - MIR SINE MIR -18 244 58 248 356 30 8 chr15 36096999 36097131 -49598623 + MIR SINE MIR 18 152 -56 930 255 66 29 chr15 36097541 36097890 -49597864 - MER21B LTR ERV1 -124 739 378 332 317 39 19 chr15 36099064 36099323 -49596431 + MER34 LTR ERV1 1 264 -278 201 74 0 0 chr15 36099387 36099414 -49596340 + (T)n Simple_repeat Simple_repeat 1 27 0 200 326 116 20 chr15 36100593 36100740 -49595014 + MIR SINE MIR 32 192 -70 247 326 34 88 chr15 36101993 36102140 -49593614 - L2 LINE L2 -11 3261 3123 237 167 0 0 chr15 36102627 36102669 -49593085 + L2 LINE L2 3268 3309 -4 537 316 24 0 chr15 36102676 36102844 -49592910 - MIR SINE MIR -52 210 39 218 304 152 0 chr15 36103039 36103118 -49592636 - MIR SINE MIR -78 130 40 362 319 29 22 chr15 36103218 36103356 -49592398 + MIR3 SINE MIR 4 142 -66 318 370 90 35 chr15 36104204 36104515 -49591239 + L2 LINE L2 2568 2895 -419 825 262 110 0 chr15 36104764 36104996 -49590758 + MIR SINE MIR 6 262 0 288 173 0 80 chr15 36105016 36105091 -49590663 + MIR SINE MIR 194 262 0 405 39 0 0 chr15 36105771 36105822 -49589932 + (TG)n Simple_repeat Simple_repeat 2 52 0 2105 138 0 10 chr15 36106689 36106993 -49588761 - AluSx SINE Alu -11 301 1 498 286 108 22 chr15 36107979 36108164 -49587590 - MIR SINE MIR -15 247 47 21 0 0 0 chr15 36108405 36108426 -49587328 + AT_rich Low_complexity Low_complexity 1 21 0 304 216 0 0 chr15 36108453 36108504 -49587250 + MIR SINE MIR 55 105 -157 303 28 0 0 chr15 36109003 36109039 -49586715 + (TG)n Simple_repeat Simple_repeat 1 36 0 224 282 0 0 chr15 36110073 36110151 -49585603 + A-rich Low_complexity Low_complexity 1 78 0 872 264 48 4 chr15 36111355 36111582 -49584172 - MIR SINE MIR -23 239 3 29 60 0 0 chr15 36111926 36111976 -49583778 + AT_rich Low_complexity Low_complexity 1 50 0 268 314 64 21 chr15 36112469 36112609 -49583145 - MER117 DNA MER1_type -51 146 1 182 263 70 0 chr15 36112642 36112699 -49583055 + MIR SINE MIR 75 135 -73 260 246 29 14 chr15 36113803 36113872 -49581882 + CT-rich Low_complexity Low_complexity 6 75 0 524 302 17 17 chr15 36113899 36114071 -49581683 - MIR SINE MIR -50 212 41 2983 106 110 12 chr15 36114229 36114711 -49581043 + MER1A DNA MER1_type 1 529 0 243 329 136 13 chr15 36114775 36114930 -49580824 + L2 LINE L2 3099 3272 0 515 331 23 42 chr15 36114937 36115189 -49580565 - MIR SINE MIR 0 262 11 360 285 65 18 chr15 36115203 36115372 -49580382 + MIR3 SINE MIR 10 188 -71 3645 65 27 0 chr15 36115402 36115891 -49579863 - L1PA8 LINE L1 -1 6171 5670 659 280 70 37 chr15 36116424 36116667 -49579087 + MIR SINE MIR 9 259 -3 21 0 0 0 chr15 36117085 36117106 -49578648 + AT_rich Low_complexity Low_complexity 1 21 0 2809 139 34 52 chr15 36117252 36117304 -49578450 - L1MA10 LINE L1 -3 6331 6280 2027 132 10 3 chr15 36117304 36117592 -49578162 + AluSx SINE Alu 1 290 -22 2809 139 34 52 chr15 36117592 36118157 -49577597 - L1MA10 LINE L1 -54 6280 5725 1842 167 86 23 chr15 36118157 36118867 -49576887 + L1MA10 LINE L1 4969 5728 -440 190 380 42 0 chr15 36119022 36119093 -49576661 - L3 LINE CR1 -15 1562 1489 1931 128 20 7 chr15 36119096 36119392 -49576362 - AluSx SINE Alu -12 300 1 305 322 141 20 chr15 36119603 36119802 -49575952 - L3 LINE CR1 -87 1490 1268 611 315 35 42 chr15 36122201 36122461 -49573293 + MIR SINE MIR 4 261 -1 198 263 105 0 chr15 36122631 36122713 -49573041 - MIR SINE MIR -70 192 101 284 267 58 50 chr15 36122915 36123035 -49572719 + MIR SINE MIR 17 137 -71 240 143 0 0 chr15 36123816 36123858 -49571896 + (TG)n Simple_repeat Simple_repeat 2 43 0 367 254 26 18 chr15 36125638 36125752 -49570002 + MIR SINE MIR 148 262 0 2456 226 94 72 chr15 36126256 36126559 -49569195 - MER69B DNA AcHobo -1420 1106 811 703 233 0 0 chr15 36126559 36126692 -49569062 - FLAM_A SINE Alu 0 133 1 2456 226 94 72 chr15 36126692 36127414 -49568340 - MER69B DNA AcHobo -1715 811 59 382 295 28 13 chr15 36127475 36127737 -49568017 - L1ME3A LINE L1 -258 6192 5926 732 239 193 0 chr15 36127742 36127939 -49567815 + MIR SINE MIR 4 238 -24 970 271 48 74 chr15 36127964 36129129 -49566625 - L1ME3A LINE L1 -520 5924 4790 476 264 84 62 chr15 36129202 36129488 -49566266 - L1MEd LINE L1 -5041 1375 949 243 0 0 0 chr15 36129499 36129526 -49566228 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 279 0 0 0 chr15 36129525 36129556 -49566198 + (TG)n Simple_repeat Simple_repeat 2 32 0 317 268 65 41 chr15 36129780 36129903 -49565851 + L2 LINE L2 3188 3313 0 210 244 0 0 chr15 36130095 36130140 -49565614 + GA-rich Low_complexity Low_complexity 3 47 0 180 0 0 0 chr15 36130562 36130582 -49565172 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 347 254 9 9 chr15 36131132 36131246 -49564508 + L1ME4a LINE L1 5938 6051 -70 23 33 0 0 chr15 36131294 36131324 -49564430 + AT_rich Low_complexity Low_complexity 1 30 0 1562 176 0 8 chr15 36131525 36131780 -49563974 + AluSx SINE Alu 5 257 -55 522 341 134 3 chr15 36131885 36132190 -49563564 + L2 LINE L2 2631 2975 -339 1061 69 25 19 chr15 36132240 36132400 -49563354 + L1PA13 LINE L1 6000 6160 -3 405 289 113 14 chr15 36132586 36132728 -49563026 + L2 LINE L2 3117 3272 0 408 130 0 0 chr15 36133316 36133385 -49562369 + (TCC)n Simple_repeat Simple_repeat 3 71 0 547 318 98 11 chr15 36134262 36134633 -49561121 - L2 LINE L2 -213 3059 2647 1914 161 0 3 chr15 36135049 36135348 -49560406 + AluJb SINE Alu 1 298 -14 1140 194 5 37 chr15 36138037 36138197 -49557557 - AluJo SINE Alu -18 294 141 1131 15 15 0 chr15 36138197 36138334 -49557420 - L1PA4 LINE L1 -1 6154 6016 1140 194 5 37 chr15 36138334 36138389 -49557365 - AluJo SINE Alu -171 141 86 2508 59 9 3 chr15 36139953 36140276 -49555478 - L1PA5 LINE L1 -4 6150 5826 184 293 69 0 chr15 36141327 36141385 -49554369 + L2 LINE L2 3147 3208 -64 3464 136 9 15 chr15 36141391 36141921 -49553833 - MER1A DNA MER1_type 0 527 1 275 336 86 7 chr15 36142396 36142536 -49553218 - MIR3 SINE MIR -8 200 50 1044 278 70 78 chr15 36142824 36143043 -49552711 + L2 LINE L2 2804 3023 -290 746 195 0 0 chr15 36143043 36143166 -49552588 - FLAM_C SINE Alu -9 124 2 2050 140 22 0 chr15 36143167 36143523 -49552231 - L1MC1 LINE L1 -8 6325 5962 1044 278 70 78 chr15 36143523 36143815 -49551939 + L2 LINE L2 3022 3313 0 414 337 82 28 chr15 36143813 36144068 -49551686 - L2 LINE L2 -19 3253 2985 * 626 226 87 33 chr15 36144163 36144436 -49551318 + LTR16C LTR ERVL 150 489 -2 200 350 161 15 chr15 36144447 36144584 -49551170 - L2 LINE L2 -290 2982 2826 240 111 0 0 chr15 36144672 36144708 -49551046 + (TA)n Simple_repeat Simple_repeat 2 37 0 23 33 0 0 chr15 36145622 36145652 -49550102 + AT_rich Low_complexity Low_complexity 1 30 0 1226 222 45 48 chr15 36146142 36146276 -49549478 - L1ME2 LINE L1 0 6149 6016 2181 113 0 0 chr15 36146276 36146569 -49549185 + AluSx SINE Alu 1 293 -19 1226 222 45 48 chr15 36146569 36146951 -49548803 - L1ME2 LINE L1 -133 6016 5660 516 204 66 11 chr15 36146953 36147134 -49548620 + L1M4 LINE L1 4984 5174 -972 * 1062 224 54 4 chr15 36147131 36147390 -49548364 - L1ME2 LINE L1 -469 5678 5407 620 161 0 32 chr15 36148028 36148152 -49547602 - L1MD3 LINE L1 0 7995 7876 316 275 53 58 chr15 36149290 36149632 -49546122 - L1ME2 LINE L1 -3594 2535 2196 1180 162 8 174 chr15 36149648 36149999 -49545755 + AluJo SINE Alu 1 293 -9 368 335 138 23 chr15 36150424 36150642 -49545112 - HAL1 LINE L1 -742 1765 1523 441 263 56 26 chr15 36150654 36150886 -49544868 - L1ME3A LINE L1 -5 6165 5927 2504 87 3 0 chr15 36150904 36151216 -49544538 + AluSq SINE Alu 1 313 0 951 283 89 63 chr15 36151342 36151596 -49544158 - L1ME2 LINE L1 -4881 1238 992 1642 185 57 66 chr15 36151596 36152067 -49543687 + MLT1C LTR MaLR 1 467 0 951 283 89 63 chr15 36152067 36152206 -49543548 - L1ME2 LINE L1 -5127 992 858 1758 182 0 10 chr15 36152206 36152508 -49543246 - AluJb SINE Alu -13 299 1 951 283 89 63 chr15 36152508 36153201 -49542553 - L1ME2 LINE L1 -5261 858 123 572 248 200 5 chr15 36154101 36154311 -49541443 + MIR SINE MIR 12 262 0 24 0 0 0 chr15 36154632 36154656 -49541098 + AT_rich Low_complexity Low_complexity 1 24 0 7089 53 41 0 chr15 36154656 36155569 -49540185 - L1PA5 LINE L1 -8 6146 5227 1674 176 14 10 chr15 36158377 36158672 -49537082 + AluJb SINE Alu 1 296 -16 32 57 0 0 chr15 36158718 36158771 -49536983 + AT_rich Low_complexity Low_complexity 1 53 0 1615 196 73 3 chr15 36159157 36159498 -49536256 + MLT1A1 LTR MaLR 1 365 0 2110 132 20 7 chr15 36160681 36160985 -49534769 - AluSq SINE Alu 0 313 6 436 285 97 6 chr15 36161539 36161704 -49534050 + MIR SINE MIR 43 222 -40 2443 70 0 0 chr15 36162210 36162508 -49533246 - AluY SINE Alu -13 298 1 674 185 101 117 chr15 36163484 36163792 -49531962 + MER5C DNA MER1_type 16 318 -6 360 303 94 30 chr15 36163812 36164046 -49531708 + MIR SINE MIR 13 261 -1 4177 97 16 3 chr15 36164220 36164828 -49530926 - L1MA3 LINE L1 -7 6298 5683 536 179 66 20 chr15 36164828 36164979 -49530775 + ORSL DNA AcHobo 8 165 -110 418 303 45 17 chr15 36165918 36166096 -49529658 - MER5A DNA MER1_type -1 188 6 1140 169 22 40 chr15 36167743 36167968 -49527786 + AluJb SINE Alu 82 302 -10 892 287 87 37 chr15 36168994 36169395 -49526359 + L2 LINE L2 2893 3313 0 2040 141 0 49 chr15 36169673 36169999 -49525755 - AluSx SINE Alu -2 310 1 990 121 0 12 chr15 36170152 36170318 -49525436 + MER53 DNA DNA 26 189 0 271 180 0 0 chr15 36170462 36170512 -49525242 - MIR SINE MIR -140 122 73 316 200 144 11 chr15 36170515 36170605 -49525149 + L2 LINE L2 3116 3217 -96 2323 90 3 13 chr15 36170808 36171120 -49524634 - AluSc SINE Alu 0 309 1 474 312 85 15 chr15 36171916 36172115 -49523639 - MIR SINE MIR -42 220 8 896 52 0 0 chr15 36172126 36172241 -49523513 - L1PA5 LINE L1 0 6154 6040 489 325 24 0 chr15 36175308 36175477 -49520277 + MIR SINE MIR 73 245 -17 2256 107 3 3 chr15 36175569 36175878 -49519876 - AluSc SINE Alu 0 309 1 248 312 0 46 chr15 36176192 36176301 -49519453 - MIR SINE MIR -70 192 89 577 284 30 24 chr15 36176391 36176586 -49519168 - MIR SINE MIR -62 146 5 797 238 41 6 chr15 36176615 36176787 -49518967 - MER5A DNA MER1_type -6 183 6 2029 138 14 7 chr15 36177342 36177638 -49518116 + AluJb SINE Alu 2 299 -13 1849 183 0 3 chr15 36178492 36178798 -49516956 + AluSx SINE Alu 1 305 -7 183 42 0 0 chr15 36179473 36179497 -49516257 + (CCCCCA)n Simple_repeat Simple_repeat 6 29 0 391 304 145 7 chr15 36180819 36180957 -49514797 + L2 LINE L2 3115 3271 -1 961 125 0 7 chr15 36182439 36182575 -49513179 + AluSq/x SINE Alu 1 135 -177 2042 128 20 0 chr15 36182575 36182872 -49512882 + AluSx SINE Alu 1 303 -9 2063 138 3 0 chr15 36182948 36183245 -49512509 + AluSx SINE Alu 1 298 -14 331 272 118 58 chr15 36183292 36184061 -49511693 + L1MEc LINE L1 1602 2376 -3839 2319 278 48 15 chr15 36184152 36185401 -49510353 + L1MEc LINE L1 2581 3870 -2345 1232 214 106 10 chr15 36185951 36186367 -49509387 + L1MEc LINE L1 3851 4306 -1909 374 271 154 68 chr15 36186472 36186752 -49509002 + L1MC4a LINE L1 6076 6379 -1429 695 211 70 85 chr15 36186909 36187327 -49508427 + L1MC5 LINE L1 6547 6917 -891 432 260 67 28 chr15 36187350 36187604 -49508150 + L1MC5 LINE L1 6957 7220 -741 268 310 57 0 chr15 36187741 36187899 -49507855 + L1MC5 LINE L1 7276 7442 -519 231 167 0 0 chr15 36187957 36187999 -49507755 + GA-rich Low_complexity Low_complexity 1 42 0 317 235 112 73 chr15 36188910 36189198 -49506556 + L1ME4a LINE L1 5731 6035 -86 1705 176 10 36 chr15 36189198 36189499 -49506255 - AluJo SINE Alu -19 293 1 317 235 112 73 chr15 36189499 36189550 -49506204 + L1ME4a LINE L1 6035 6083 -38 405 230 50 10 chr15 36190351 36190451 -49505303 - MER5A DNA MER1_type -71 118 15 200 277 0 0 chr15 36190462 36190509 -49505245 + L2 LINE L2 3263 3309 -4 198 71 0 0 chr15 36191033 36191061 -49504693 + (TAAAAA)n Simple_repeat Simple_repeat 4 31 0 25 0 0 0 chr15 36191990 36192015 -49503739 + AT_rich Low_complexity Low_complexity 1 25 0 371 286 37 19 chr15 36192195 36192356 -49503398 - MIR SINE MIR -11 251 88 2028 131 32 0 chr15 36192908 36193191 -49502563 - AluSg SINE Alu -18 292 1 274 306 14 21 chr15 36193191 36193326 -49502428 + L2 LINE L2 2769 2904 -410 361 235 71 58 chr15 36193378 36193557 -49502197 + MIR SINE MIR 30 209 -53 354 283 27 48 chr15 36193655 36193842 -49501912 - MIR SINE MIR -56 152 11 375 281 65 70 chr15 36194249 36194351 -49501403 + MIR SINE MIR 6 108 -154 2160 127 13 0 chr15 36194351 36194658 -49501096 - AluSp SINE Alu -1 312 2 375 281 65 70 chr15 36194658 36194740 -49501014 + MIR SINE MIR 108 189 -73 2100 141 3 0 chr15 36195325 36195622 -49500132 + AluSx SINE Alu 1 298 -14 513 204 34 7 chr15 36196061 36196363 -49499391 + CT-rich Low_complexity Low_complexity 1 310 0 239 309 114 36 chr15 36196364 36196584 -49499170 + L2 LINE L2 3077 3313 0 245 269 0 0 chr15 36196645 36196723 -49499031 + MER113 DNA MER1_type? 3 80 -441 428 286 103 90 chr15 36197373 36197568 -49498186 - L2 LINE L2 -1 3312 3109 1878 152 22 0 chr15 36197568 36197866 -49497888 + AluSx SINE Alu 1 304 0 428 286 103 90 chr15 36197866 36197970 -49497784 - L2 LINE L2 -204 3109 3008 2200 115 0 3 chr15 36198769 36199056 -49496698 + AluSg SINE Alu 1 286 -24 329 256 142 3 chr15 36200296 36200483 -49495271 - MIR SINE MIR -1 261 2 283 275 108 8 chr15 36200829 36200949 -49494805 + MIR3 SINE MIR 37 168 -40 399 21 0 0 chr15 36201205 36201253 -49494501 + (CA)n Simple_repeat Simple_repeat 1 48 0 265 238 0 48 chr15 36201767 36201830 -49493924 + L2 LINE L2 3248 3307 -6 674 205 51 6 chr15 36201970 36202126 -49493628 - MER96B DNA MER1_type? -2 415 253 197 278 241 9 chr15 36202442 36202550 -49493204 + L2 LINE L2 3138 3270 -2 447 92 0 0 chr15 36204344 36204409 -49491345 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 2005 125 0 4 chr15 36204414 36204694 -49491060 - AluSp SINE Alu -34 279 1 981 147 0 0 chr15 36205509 36205679 -49490075 + (TAGA)n Simple_repeat Simple_repeat 3 172 0 1410 138 53 11 chr15 36206232 36206514 -49489240 - L1MA4A LINE L1 0 6303 6010 1877 130 0 4 chr15 36206514 36206783 -49488971 - AluSx SINE Alu -20 292 25 250 222 13 25 chr15 36207588 36207667 -49488087 - L1MC4 LINE L1 -370 7672 7508 205 307 53 26 chr15 36207707 36207821 -49487933 + MIR SINE MIR 18 134 -74 260 265 72 66 chr15 36208039 36208205 -49487549 - L1MC5 LINE L1 -492 7469 7303 2213 136 0 0 chr15 36208212 36208513 -49487241 - AluSx SINE Alu -11 301 1 1992 138 18 0 chr15 36208753 36208941 -49486813 - AluJo SINE Alu 0 315 118 183 42 0 0 chr15 36208941 36208965 -49486789 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1992 138 18 0 chr15 36208965 36209086 -49486668 - AluJo SINE Alu -197 118 1 249 235 56 0 chr15 36209089 36209192 -49486562 - L1MC5 LINE L1 -748 7213 7146 1917 205 18 20 chr15 36209192 36209641 -49486113 - MER39 LTR ERV1 0 707 260 290 189 44 67 chr15 36209628 36209718 -49486036 - LTR48B LTR ERV1 -556 88 1 * 251 286 63 37 chr15 36209718 36209907 -49485847 - L1MC5 LINE L1 -808 7153 6960 * 393 183 106 29 chr15 36209898 36210048 -49485706 - L1MC4 LINE L1 -912 7083 6916 285 262 27 27 chr15 36210777 36210926 -49484828 - L1MC5 LINE L1 -519 7442 7294 706 289 52 20 chr15 36210964 36211213 -49484541 - MIR SINE MIR 0 262 6 500 76 0 13 chr15 36211385 36211464 -49484290 + (TG)n Simple_repeat Simple_repeat 1 78 0 180 260 260 0 chr15 36211728 36211805 -49483949 + L2 LINE L2 3156 3252 -20 * 197 298 0 0 chr15 36211772 36211819 -49483935 + MIR SINE MIR 216 262 0 539 302 36 26 chr15 36212148 36212340 -49483414 + MIR SINE MIR 28 221 -41 1230 188 0 4 chr15 36212659 36212909 -49482845 + L1MB3 LINE L1 5932 6180 -3 554 199 59 89 chr15 36217127 36217363 -49478391 - L1ME3A LINE L1 -202 5968 5740 357 266 32 103 chr15 36217482 36217734 -49478020 + MLT1J2 LTR MaLR 160 393 -57 1246 290 82 20 chr15 36217766 36218607 -49477147 - L1ME3A LINE L1 -420 5742 4810 398 0 65 0 chr15 36218607 36218669 -49477085 + (TA)n Simple_repeat Simple_repeat 2 67 0 1246 290 82 20 chr15 36218669 36218934 -49476820 - L1ME3A LINE L1 -1352 4810 4563 920 291 52 22 chr15 36218990 36219686 -49476068 - L1ME3A LINE L1 -1819 4327 3504 908 93 16 0 chr15 36219689 36219818 -49475936 - AluSg/x SINE Alu -8 304 174 526 232 115 44 chr15 36219822 36219983 -49475771 - L1ME3A LINE L1 -2640 3506 3358 2130 122 17 0 chr15 36219983 36220278 -49475476 - AluSx SINE Alu -12 300 1 526 232 115 44 chr15 36220278 36220362 -49475392 - L1ME3A LINE L1 -2788 3358 3281 2433 93 3 0 chr15 36220362 36220674 -49475080 - AluSq SINE Alu 0 313 1 526 232 115 44 chr15 36220674 36220836 -49474918 - L1ME3A LINE L1 -2865 3281 3069 186 43 0 0 chr15 36221326 36221349 -49474405 + (TG)n Simple_repeat Simple_repeat 2 24 0 233 218 0 18 chr15 36221512 36221567 -49474187 + CT-rich Low_complexity Low_complexity 1 54 0 1093 220 40 99 chr15 36221567 36222121 -49473633 - L2 LINE L2 -1 3312 2674 856 141 23 0 chr15 36222121 36222249 -49473505 - AluSq/x SINE Alu -176 136 6 1808 158 0 3 chr15 36222251 36222564 -49473190 - AluJb SINE Alu 0 312 1 810 297 73 3 chr15 36222569 36222872 -49472882 - L2 LINE L2 -776 2538 2215 2563 58 0 0 chr15 36223041 36223349 -49472405 - AluY SINE Alu -2 309 2 22 0 0 0 chr15 36223351 36223373 -49472381 + AT_rich Low_complexity Low_complexity 1 22 0 2284 110 0 7 chr15 36223583 36223892 -49471862 - AluSc SINE Alu -2 307 1 267 292 0 0 chr15 36224276 36224366 -49471388 + (TCCA)n Simple_repeat Simple_repeat 1 90 0 2023 123 83 14 chr15 36225434 36225785 -49469969 + THE1C LTR MaLR 1 375 0 376 272 106 28 chr15 36225983 36226163 -49469591 + MIR SINE MIR 33 226 -36 218 352 102 8 chr15 36226181 36226309 -49469445 - L2 LINE L2 -11 3261 3122 424 253 10 0 chr15 36226551 36226650 -49469104 + L2 LINE L2 3201 3300 -13 1501 157 108 11 chr15 36226803 36227071 -49468683 - AluJb SINE Alu -7 305 12 273 328 84 61 chr15 36227077 36227422 -49468332 - L2 LINE L2 -562 2752 2400 180 254 104 0 chr15 36227464 36227531 -49468223 + MIR SINE MIR 117 190 -72 300 225 188 0 chr15 36229543 36229623 -49466131 - MER81 DNA DNA -19 95 1 1648 179 11 0 chr15 36229652 36229955 -49465799 + AluJo SINE Alu 1 306 0 195 69 0 0 chr15 36230027 36230056 -49465698 + (T)n Simple_repeat Simple_repeat 1 29 0 987 254 25 8 chr15 36231194 36231430 -49464324 + MIR SINE MIR 23 262 0 1678 171 0 49 chr15 36231520 36231672 -49464082 - AluJb SINE Alu -27 285 152 2207 110 0 3 chr15 36231672 36231973 -49463781 - AluSp SINE Alu -13 300 1 1678 171 0 49 chr15 36231973 36232107 -49463647 - AluJb SINE Alu -160 152 13 703 277 13 55 chr15 36232133 36232368 -49463386 - MIR SINE MIR -10 252 28 2295 84 0 10 chr15 36232387 36232697 -49463057 - AluY SINE Alu -4 307 1 288 294 78 14 chr15 36233054 36233229 -49462525 + MIR SINE MIR 3 197 -61 * 440 248 26 0 chr15 36233228 36233341 -49462413 + MIR SINE MIR 34 149 -113 207 343 67 38 chr15 36233515 36233620 -49462134 + L2 LINE L2 3206 3313 0 185 309 0 0 chr15 36233796 36233851 -49461903 + MIR SINE MIR 69 123 -85 32 0 0 0 chr15 36233989 36234021 -49461733 + AT_rich Low_complexity Low_complexity 1 32 0 3609 200 120 115 chr15 36234080 36234370 -49461384 + MLT1D-int LTR MaLR 4 291 -1080 1636 181 54 4 chr15 36234370 36234647 -49461107 + AluJb SINE Alu 3 293 -19 3609 200 120 115 chr15 36234647 36235701 -49460053 + MLT1D-int LTR MaLR 291 1355 -16 1634 244 58 50 chr15 36235707 36236207 -49459547 + MLT1D LTR MaLR 1 504 -1 790 220 29 0 chr15 36236365 36236538 -49459216 + MER5B DNA MER1_type 1 178 0 263 276 71 67 chr15 36236556 36236810 -49458944 + L2 LINE L2 2242 2496 -818 275 0 0 28 chr15 36236962 36236998 -49458756 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1904 151 7 10 chr15 36237009 36237307 -49458447 + AluJb SINE Alu 1 297 -15 334 273 41 41 chr15 36237630 36237751 -49458003 - MIR SINE MIR -114 148 28 359 268 36 82 chr15 36237793 36237987 -49457767 - MER5A DNA MER1_type 0 189 5 33 0 0 0 chr15 36238742 36238775 -49456979 + AT_rich Low_complexity Low_complexity 1 33 0 481 248 25 0 chr15 36239224 36239345 -49456409 - L1ME4a LINE L1 -9 6112 5989 467 211 67 10 chr15 36239572 36239676 -49456078 - L2 LINE L2 -4 3309 3200 276 271 0 0 chr15 36239862 36239921 -49455833 + L2 LINE L2 3211 3269 -3 183 338 27 40 chr15 36240041 36240115 -49455639 + L3b LINE CR1 1498 1570 -13 219 257 59 30 chr15 36241052 36241153 -49454601 + MIR SINE MIR 13 116 -146 367 343 37 0 chr15 36241430 36241538 -49454216 + L2 LINE L2 3147 3258 -14 498 240 155 112 chr15 36241914 36242451 -49453303 + MER34 LTR ERV1 26 585 0 2536 11 0 0 chr15 36242962 36243235 -49452519 - AluYa5 SINE Alu -3 308 36 228 372 68 34 chr15 36244542 36244728 -49451026 + MIR3 SINE MIR 1 194 -62 180 0 0 0 chr15 36245149 36245169 -49450585 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 222 118 0 0 chr15 36245168 36245202 -49450552 + (TG)n Simple_repeat Simple_repeat 1 34 0 1809 184 0 29 chr15 36245752 36246068 -49449686 - AluJb SINE Alu -5 307 1 276 30 0 0 chr15 36246232 36246265 -49449489 + (TG)n Simple_repeat Simple_repeat 1 33 0 198 0 0 0 chr15 36246264 36246286 -49449468 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 448 254 88 46 chr15 36246640 36246842 -49448912 + MIR SINE MIR 31 253 -9 2217 98 3 7 chr15 36247762 36248059 -49447695 + AluSq SINE Alu 1 296 -17 21 0 0 0 chr15 36249743 36249764 -49445990 + AT_rich Low_complexity Low_complexity 1 21 0 611 231 26 19 chr15 36251061 36251217 -49444537 + MIR SINE MIR 70 226 -36 1903 120 33 11 chr15 36251217 36251518 -49444236 + AluSq SINE Alu 1 307 0 282 271 0 0 chr15 36251530 36251589 -49444165 + MIR SINE MIR 204 262 0 181 277 21 0 chr15 36251748 36251795 -49443959 + L2 LINE L2 3006 3053 -219 460 244 77 89 chr15 36252130 36252256 -49443498 + MER5B DNA MER1_type 9 134 -44 2650 33 0 0 chr15 36252256 36252557 -49443197 - AluY SINE Alu -10 301 1 460 244 77 89 chr15 36252557 36252598 -49443156 + MER5B DNA MER1_type 134 174 -4 2402 78 0 3 chr15 36253460 36253768 -49441986 + AluY SINE Alu 1 307 -4 22 0 0 0 chr15 36257417 36257439 -49438315 + AT_rich Low_complexity Low_complexity 1 22 0 2100 154 44 26 chr15 36258491 36258874 -49436880 + MLT1B LTR MaLR 1 390 0 192 246 158 44 chr15 36259664 36259778 -49435976 + MIR3 SINE MIR 81 207 -1 324 289 13 0 chr15 36259850 36259926 -49435828 - L2 LINE L2 -8 3264 3188 493 280 30 0 chr15 36260127 36260259 -49435495 + MIR3 SINE MIR 70 205 -3 1772 178 0 28 chr15 36260428 36260748 -49435006 + AluJb SINE Alu 2 312 0 222 174 0 0 chr15 36260752 36260798 -49434956 + (CATATA)n Simple_repeat Simple_repeat 6 51 0 2327 101 0 0 chr15 36261546 36261852 -49433902 - AluSx SINE Alu -6 306 1 247 241 121 12 chr15 36262089 36262172 -49433582 + MIR SINE MIR 100 191 -71 2395 86 0 3 chr15 36262226 36262527 -49433227 - AluY SINE Alu -11 300 1 867 167 8 0 chr15 36263400 36263532 -49432222 - FLAM_C SINE Alu 0 133 1 2142 206 49 24 chr15 36264397 36264863 -49430891 + MLT2B1 LTR ERVL 1 478 -42 377 154 0 13 chr15 36264863 36264941 -49430813 + (TCTA)n Simple_repeat Simple_repeat 3 79 0 2394 84 0 7 chr15 36267055 36267363 -49428391 + AluY SINE Alu 1 306 -5 760 172 191 6 chr15 36267430 36267587 -49428167 + MER20 DNA MER1_type 6 191 -28 442 265 96 14 chr15 36269418 36269637 -49426117 + L1ME4a LINE L1 5694 5930 -191 2479 174 75 22 chr15 36269643 36270153 -49425601 + MLT1F LTR MaLR 1 537 -5 439 260 96 14 chr15 36270762 36270981 -49424773 + L1ME4a LINE L1 5694 5930 -191 2479 174 75 22 chr15 36270987 36271497 -49424257 + MLT1F LTR MaLR 1 537 -5 1878 221 62 61 chr15 36272148 36272895 -49422859 - LTR8A LTR ERV1 0 727 1 2830 153 25 5 chr15 36273739 36274177 -49421577 + MLT2B2 LTR ERVL 7 513 -41 601 82 18 18 chr15 36274177 36274287 -49421467 + (TCTA)n Simple_repeat Simple_repeat 3 112 0 2830 153 25 5 chr15 36274287 36274324 -49421430 + MLT2B2 LTR ERVL 513 548 -6 341 183 12 37 chr15 36274614 36274696 -49421058 - MLT1H LTR MaLR 0 555 476 735 262 114 73 chr15 36274705 36275048 -49420706 - MLT1H LTR MaLR -192 357 1 2277 95 0 0 chr15 36275253 36275562 -49420192 - AluSx SINE Alu 0 309 1 731 299 15 0 chr15 36275614 36275811 -49419943 - MER63A DNA MER1_type -2 208 9 281 331 73 8 chr15 36275902 36276026 -49419728 + L2 LINE L2 3139 3270 -2 192 111 0 0 chr15 36277244 36277280 -49418474 + (T)n Simple_repeat Simple_repeat 1 36 0 293 242 32 11 chr15 36277774 36277786 -49417968 + HAL1 LINE L1 88 98 -2409 1493 156 0 0 chr15 36277786 36278017 -49417737 + AluSg/x SINE Alu 80 310 0 293 242 32 11 chr15 36278017 36278099 -49417655 + HAL1 LINE L1 98 184 -2323 660 250 59 51 chr15 36278497 36278600 -49417154 + L1MCc LINE L1 1179 1280 -5415 909 156 0 22 chr15 36278600 36278735 -49417019 - FLAM_C SINE Alu 0 133 2 660 250 59 51 chr15 36278735 36279096 -49416658 + L1MCc LINE L1 1280 1808 -4887 262 222 14 132 chr15 36279121 36279265 -49416489 + L1M4 LINE L1 4457 4583 -1563 352 218 128 15 chr15 36279482 36279615 -49416139 + LTR16C LTR ERVL 344 491 0 1143 289 128 24 chr15 36279616 36280069 -49415685 + HAL1 LINE L1 182 681 -1826 2430 66 0 10 chr15 36282122 36282425 -49413329 - AluY SINE Alu -11 300 1 846 207 65 121 chr15 36282733 36283120 -49412634 - MLT1A1 LTR MaLR 0 365 1 284 290 25 35 chr15 36283123 36283323 -49412431 + HAL1 LINE L1 1062 1259 -1248 2118 217 98 82 chr15 36283331 36284429 -49411325 + HAL1 LINE L1 1392 2507 0 10415 166 50 44 chr15 36284647 36287251 -49408503 - Charlie5 DNA MER1_type 0 2621 2 468 294 111 0 chr15 36287330 36287483 -49408271 - MIR SINE MIR -70 192 23 290 193 273 11 chr15 36287649 36287737 -49408017 - L2 LINE L2 -10 3303 3193 2014 124 62 0 chr15 36288098 36288389 -49407365 + AluSq SINE Alu 1 309 -4 221 0 35 0 chr15 36288692 36288721 -49407033 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 280 325 58 25 chr15 36288769 36288889 -49406865 - MIR3 SINE MIR -52 156 33 228 363 82 0 chr15 36288967 36289102 -49406652 + MIR SINE MIR 46 191 -71 469 269 83 46 chr15 36289461 36289677 -49406077 - MIR SINE MIR -32 230 7 * 542 280 0 8 chr15 36289621 36289746 -49406008 + MIR SINE MIR 25 148 -114 2496 69 0 0 chr15 36290421 36290727 -49405027 - AluY SINE Alu -5 306 1 207 245 0 0 chr15 36290764 36290813 -49404941 + L2 LINE L2 3248 3296 -17 21 0 0 0 chr15 36292154 36292175 -49403579 + AT_rich Low_complexity Low_complexity 1 21 0 371 266 0 44 chr15 36292991 36293104 -49402650 - L2 LINE L2 -184 3088 2981 1792 80 4 29 chr15 36293241 36293515 -49402239 + L1MA1 LINE L1 6036 6302 0 782 246 0 6 chr15 36294706 36294889 -49400865 + MIR SINE MIR 80 261 -1 333 0 0 0 chr15 36295032 36295069 -49400685 + (CA)n Simple_repeat Simple_repeat 2 38 0 396 0 0 0 chr15 36295939 36295983 -49399771 + (TG)n Simple_repeat Simple_repeat 2 45 0 355 271 25 0 chr15 36296168 36296286 -49399468 + L1MC4a LINE L1 5766 5886 -1922 1098 117 22 22 chr15 36296488 36296668 -49399086 - Tigger3b DNA MER2_type 0 1232 1053 1691 108 119 0 chr15 36296676 36296954 -49398800 + MER1B DNA MER1_type 29 339 0 1514 95 23 53 chr15 36296954 36297027 -49398727 - Tigger3b DNA MER2_type -2068 960 886 1836 118 44 4 chr15 36297027 36297297 -49398457 + AluSc SINE Alu 1 281 -28 1514 95 23 53 chr15 36297297 36297484 -49398270 - Tigger3b DNA MER2_type -2142 886 708 419 141 8 164 chr15 36297486 36297614 -49398140 + FLAM_A SINE Alu 29 136 -6 3772 150 25 4 chr15 36297618 36298310 -49397444 - Tigger3b DNA MER2_type -524 707 2 24 0 0 0 chr15 36298343 36298367 -49397387 + AT_rich Low_complexity Low_complexity 1 24 0 1729 285 49 31 chr15 36299096 36299745 -49396009 + MLT2F LTR ERVL 1 661 -2 2599 118 62 5 chr15 36299885 36300290 -49395464 - MSTA LTR MaLR 0 428 1 2270 122 0 3 chr15 36300651 36300955 -49394799 - AluSx SINE Alu -9 303 1 1808 157 102 105 chr15 36301007 36301442 -49394312 + MLT2B1 LTR ERVL 1 436 -84 204 40 0 0 chr15 36301442 36301467 -49394287 + (TC)n Simple_repeat Simple_repeat 2 26 0 195 42 0 0 chr15 36301470 36301494 -49394260 + (CA)n Simple_repeat Simple_repeat 1 24 0 1808 157 102 105 chr15 36301494 36301576 -49394178 + MLT2B1 LTR ERVL 438 520 0 1150 193 3 77 chr15 36301991 36302302 -49393452 - MLT1B LTR MaLR -5 385 98 321 286 121 62 chr15 36304166 36304390 -49391364 - L1M2a LINE L1 -6369 799 563 310 313 26 31 chr15 36305902 36306097 -49389657 - L1ME LINE L1 -296 5825 5632 2129 108 3 0 chr15 36306723 36307009 -49388745 + AluSp SINE Alu 1 287 -26 216 0 0 0 chr15 36307012 36307036 -49388718 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 314 241 35 35 chr15 36307202 36307289 -49388465 - MIR3 SINE MIR -7 201 115 301 256 137 58 chr15 36307304 36307567 -49388187 - L2 LINE L2 -258 3055 2741 344 227 8 45 chr15 36307569 36307585 -49388169 - L1MA10 LINE L1 -1 6333 6318 3004 215 81 41 chr15 36307585 36308205 -49387549 - L1ME1 LINE L1 -5 6161 5567 2355 88 10 0 chr15 36308205 36308502 -49387252 - AluSq SINE Alu -13 300 1 3004 215 81 41 chr15 36308502 36309373 -49386381 - L1ME1 LINE L1 -599 5567 4606 356 209 0 15 chr15 36309373 36309440 -49386314 - L2 LINE L2 -571 2743 2678 663 205 0 0 chr15 36309749 36309866 -49385888 + FLAM_C SINE Alu 1 117 -16 253 259 69 61 chr15 36309952 36310083 -49385671 + MIR SINE MIR 74 205 -57 2393 80 0 19 chr15 36312752 36313065 -49382689 + AluY SINE Alu 1 307 -4 268 305 0 0 chr15 36315155 36315214 -49380540 + L2 LINE L2 3255 3313 0 1088 216 100 74 chr15 36315337 36315838 -49379916 - LTR33A LTR ERVL -8 515 2 27 29 0 0 chr15 36315874 36315908 -49379846 + AT_rich Low_complexity Low_complexity 1 34 0 700 153 24 0 chr15 36316489 36316613 -49379141 - MER20 DNA MER1_type 0 219 93 8214 49 9 1 chr15 36316936 36318750 -49377004 - L1PA5 LINE L1 -3 6151 4329 393 209 0 11 chr15 36318899 36318990 -49376764 - MER20 DNA MER1_type -128 91 2 205 203 43 43 chr15 36318994 36319063 -49376691 - MIR SINE MIR -94 168 100 41 0 0 0 chr15 36320716 36320757 -49374997 + AT_rich Low_complexity Low_complexity 1 41 0 1993 171 0 0 chr15 36321313 36321618 -49374136 + AluJb SINE Alu 3 307 -5 978 242 99 65 chr15 36321948 36322394 -49373360 - MLT1D LTR MaLR -33 472 12 494 265 92 114 chr15 36322413 36322825 -49372929 - HAL1 LINE L1 -905 1602 1200 44 0 0 0 chr15 36322874 36322918 -49372836 + AT_rich Low_complexity Low_complexity 1 44 0 1826 199 25 87 chr15 36322953 36323668 -49372086 - L1MA4 LINE L1 -115 6185 5515 835 86 86 0 chr15 36324207 36324335 -49371419 - MER85 DNA T2_type 0 139 1 333 293 33 88 chr15 36324490 36324671 -49371083 - L1MEd LINE L1 -4524 1605 1435 350 286 89 33 chr15 36324686 36325087 -49370667 - L1MEd LINE L1 -4768 1542 1081 1910 103 6 29 chr15 36325088 36325399 -49370355 - AluY SINE Alu -7 304 1 183 204 0 0 chr15 36326869 36326918 -49368836 + GA-rich Low_complexity Low_complexity 1 49 0 1783 142 39 3 chr15 36327080 36327391 -49368363 - MER44D DNA MER2_type -8 601 10 271 253 25 13 chr15 36327662 36327741 -49368013 + CT-rich Low_complexity Low_complexity 3 82 0 1099 118 55 35 chr15 36328081 36328335 -49367419 + Charlie1 DNA MER1_type 2434 2692 -69 362 306 30 22 chr15 36328343 36328477 -49367277 - MIR SINE MIR -101 161 27 2251 107 3 25 chr15 36328492 36328811 -49366943 - AluSq SINE Alu -1 312 1 1054 189 50 43 chr15 36328982 36329304 -49366450 - MER33 DNA MER1_type 0 324 1 691 261 68 11 chr15 36329307 36329483 -49366271 + MIR SINE MIR 34 219 -43 185 62 0 31 chr15 36329582 36329614 -49366140 + (GCTG)n Simple_repeat Simple_repeat 4 34 0 1478 203 12 20 chr15 36329841 36330110 -49365644 - L1ME1 LINE L1 -112 6123 5856 2183 133 98 20 chr15 36330110 36330507 -49365247 + MSTA LTR MaLR 1 428 0 1478 203 12 20 chr15 36330507 36330582 -49365172 - L1ME1 LINE L1 -379 5856 5782 189 0 0 0 chr15 36330582 36330603 -49365151 + (TC)n Simple_repeat Simple_repeat 2 22 0 1820 172 0 7 chr15 36330610 36330907 -49364847 - AluJb SINE Alu -3 309 15 1652 218 147 17 chr15 36330915 36331123 -49364631 - L1ME1 LINE L1 -949 5266 5086 414 0 0 0 chr15 36331123 36331169 -49364585 + (TG)n Simple_repeat Simple_repeat 1 46 0 1652 218 147 17 chr15 36331169 36331599 -49364155 - L1ME1 LINE L1 -1129 5086 4545 490 165 0 17 chr15 36331599 36331714 -49364040 + CT-rich Low_complexity Low_complexity 4 116 0 1401 168 7 92 chr15 36331714 36332018 -49363736 - AluJb SINE Alu -34 278 1 4882 261 112 39 chr15 36332101 36333725 -49362029 - L1ME1 LINE L1 -1674 4541 3037 1875 169 0 0 chr15 36333725 36334026 -49361728 - AluSx SINE Alu -11 301 1 4882 261 112 39 chr15 36334026 36336528 -49359226 - L1ME1 LINE L1 -3178 3037 148 2090 117 7 0 chr15 36337458 36337749 -49358005 + AluY SINE Alu 1 293 -18 329 314 24 65 chr15 36337877 36338046 -49357708 - MIR SINE MIR -66 196 35 360 326 57 14 chr15 36338068 36338209 -49357545 - MER5A DNA MER1_type -3 186 40 1012 249 46 0 chr15 36338316 36338533 -49357221 + MIR SINE MIR 12 238 -24 340 271 147 16 chr15 36340038 36340167 -49355587 - MIR SINE MIR -113 149 4 1992 127 0 7 chr15 36340503 36340779 -49354975 - AluSx SINE Alu -37 275 2 2279 83 3 13 chr15 36341187 36341488 -49354266 - AluSx SINE Alu -14 298 1 237 65 0 0 chr15 36341886 36341917 -49353837 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1525 231 124 78 chr15 36341917 36342545 -49353209 + MER21B LTR ERV1 22 794 -137 4517 125 3 22 chr15 36342559 36343206 -49352548 + MER41B LTR ERV1 1 635 0 386 289 103 43 chr15 36343341 36343691 -49352063 - MLT1K LTR MaLR -24 564 194 1619 203 48 15 chr15 36344312 36344573 -49351181 - MER58B DNA MER1_type -2079 341 65 2138 125 0 3 chr15 36344573 36344869 -49350885 + AluSg SINE Alu 1 295 -15 1619 203 48 15 chr15 36344869 36344937 -49350817 - MER58B DNA MER1_type -2355 65 1 195 295 82 33 chr15 36345248 36345370 -49350384 + L2 LINE L2 2333 2460 -854 385 300 171 0 chr15 36345423 36345563 -49350191 + MLT1K LTR MaLR 116 279 -309 337 156 0 47 chr15 36345544 36345608 -49350146 + MLT1K LTR MaLR 524 584 -4 * 185 294 272 22 chr15 36345858 36346042 -49349712 + MIR SINE MIR 20 249 -13 3687 139 39 19 chr15 36346286 36346877 -49348877 + LTR26 LTR ERV1 1 603 0 239 333 36 80 chr15 36347114 36347252 -49348502 + L2 LINE L2 3133 3264 -8 226 265 0 0 chr15 36347301 36347350 -49348404 - LTR33A LTR ERVL -2 521 473 901 176 18 18 chr15 36347372 36347537 -49348217 - AluJo SINE Alu -25 287 123 2287 100 3 0 chr15 36347540 36347839 -49347915 + AluSq SINE Alu 1 300 -13 2417 79 0 0 chr15 36348545 36348835 -49346919 + AluSg SINE Alu 1 290 -20 619 237 0 20 chr15 36349279 36349431 -49346323 + MIR SINE MIR 72 220 -42 2181 102 3 0 chr15 36349701 36349986 -49345768 - AluSg SINE Alu -24 286 1 274 270 0 14 chr15 36350636 36350710 -49345044 + MIR3 SINE MIR 136 208 0 286 291 93 17 chr15 36350884 36351056 -49344698 + L1ME LINE L1 5683 5867 -254 24 0 0 0 chr15 36352936 36352960 -49342794 + AT_rich Low_complexity Low_complexity 1 24 0 195 129 0 0 chr15 36354701 36354732 -49341022 + (T)n Simple_repeat Simple_repeat 1 31 0 180 253 60 60 chr15 36357305 36357388 -49338366 - L3 LINE CR1 -896 681 599 183 80 0 0 chr15 36357426 36357451 -49338303 + (GGA)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr15 36358060 36358081 -49337673 + AT_rich Low_complexity Low_complexity 1 21 0 243 229 0 0 chr15 36358582 36358643 -49337111 + (CAT)n Simple_repeat Simple_repeat 2 62 0 219 36 0 0 chr15 36358971 36358999 -49336755 + (CA)n Simple_repeat Simple_repeat 1 28 0 242 295 0 54 chr15 36361095 36361224 -49334530 + CT-rich Low_complexity Low_complexity 3 124 0 201 108 0 0 chr15 36362103 36362140 -49333614 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 330 153 0 0 chr15 36364120 36364179 -49331575 + CT-rich Low_complexity Low_complexity 2 60 0 240 324 19 19 chr15 36364623 36364731 -49331023 + CT-rich Low_complexity Low_complexity 2 109 0 1408 91 0 43 chr15 36367183 36367415 -49328339 - AluY SINE Alu -89 222 1 326 239 26 35 chr15 36367422 36367535 -49328219 - L1MEd LINE L1 -5043 1076 965 284 200 93 0 chr15 36367564 36367639 -49328115 - L1MB7 LINE L1 0 6184 6103 1509 185 62 0 chr15 36368377 36368669 -49327085 - AluJb SINE Alu -2 310 1 2006 125 0 0 chr15 36368691 36368978 -49326776 - AluSc SINE Alu -9 300 14 720 202 0 8 chr15 36369421 36369540 -49326214 - FLAM_A SINE Alu -12 121 4 2322 106 0 13 chr15 36371112 36371424 -49324330 - AluY SINE Alu -3 308 1 469 168 0 74 chr15 36371667 36371762 -49323992 - THE1B LTR MaLR -83 281 194 468 299 10 44 chr15 36371765 36371969 -49323785 - L1ME1 LINE L1 -55 6111 5915 2536 201 16 55 chr15 36371991 36372504 -49323250 - L1ME1 LINE L1 -238 5928 5443 1770 190 3 0 chr15 36372504 36372814 -49322940 - AluJo SINE Alu -1 311 1 2536 201 16 55 chr15 36372814 36372942 -49322812 - L1ME1 LINE L1 -723 5443 5312 259 55 96 27 chr15 36372982 36373055 -49322699 + (TTAAA)n Simple_repeat Simple_repeat 5 82 0 1335 201 46 28 chr15 36373061 36373344 -49322410 - AluJb SINE Alu -24 288 1 3452 175 29 3 chr15 36373344 36373960 -49321794 - L1MB1 LINE L1 -41 6127 5496 1957 161 0 0 chr15 36373991 36374282 -49321472 - AluSx SINE Alu -19 293 3 1222 213 0 4 chr15 36374298 36374561 -49321193 - L1ME2 LINE L1 -246 5918 5657 567 133 7 126 chr15 36374551 36374694 -49321060 - L1MB1 LINE L1 -736 5432 5307 * 1185 192 8 23 chr15 36374694 36374954 -49320800 - L1 LINE L1 -764 5382 5127 2197 126 0 0 chr15 36375006 36375299 -49320455 - AluSx SINE Alu -16 296 4 4036 267 96 14 chr15 36375303 36377392 -49318362 - L1M1 LINE L1 -4045 1925 6 417 195 42 17 chr15 36377389 36377507 -49318247 - L1ME2 LINE L1 -805 5341 5221 * 659 290 21 43 chr15 36377492 36377771 -49317983 - L1 LINE L1 -1163 4983 4711 1886 125 28 41 chr15 36377808 36378127 -49317627 - MER44D DNA MER2_type -24 585 1 1595 230 46 9 chr15 36378141 36378580 -49317174 - L1 LINE L1 -1436 4710 4256 774 249 42 5 chr15 36378595 36378784 -49316970 - MLT1F LTR MaLR -2 540 345 398 233 62 16 chr15 36378789 36378918 -49316836 - L1 LINE L1 -2017 4129 3995 180 125 0 0 chr15 36379093 36379125 -49316629 + (TTA)n Simple_repeat Simple_repeat 2 33 0 303 347 47 6 chr15 36379392 36379619 -49316135 - L1MC/D LINE L1 -588 5586 5364 37 23 0 0 chr15 36380006 36380050 -49315704 + AT_rich Low_complexity Low_complexity 1 44 0 569 241 31 75 chr15 36380270 36380498 -49315256 - MER46C DNA MER2_type -119 219 2 1065 229 18 9 chr15 36380608 36380826 -49314928 - MER69 DNA AcHobo -2304 222 3 566 296 124 16 chr15 36381036 36381486 -49314268 - L1ME LINE L1 -305 5816 5318 1912 242 10 37 chr15 36381705 36382197 -49313557 + MLT2B1 LTR ERVL 1 479 -41 214 296 14 0 chr15 36382199 36382270 -49313484 + MIR SINE MIR 191 262 0 21 0 0 0 chr15 36382334 36382355 -49313399 + AT_rich Low_complexity Low_complexity 1 21 0 1791 184 48 17 chr15 36383465 36383819 -49311935 + MLT1A1 LTR MaLR 1 365 0 2017 120 67 0 chr15 36384004 36384287 -49311467 - AluSq SINE Alu -11 302 1 198 0 0 0 chr15 36384376 36384398 -49311356 + (TTAAA)n Simple_repeat Simple_repeat 1 22 0 256 325 43 37 chr15 36384516 36384679 -49311075 - MIR3 SINE MIR -9 199 36 2082 155 50 24 chr15 36384934 36385314 -49310440 - MSTB1 LTR MaLR 0 432 43 277 93 37 19 chr15 36385314 36385368 -49310386 + CT-rich Low_complexity Low_complexity 2 56 0 1422 186 19 38 chr15 36385369 36385687 -49310067 - AluJo SINE Alu 0 312 1 272 204 0 0 chr15 36385688 36385737 -49310017 - MSTB1 LTR MaLR -379 53 5 609 319 39 17 chr15 36385788 36386280 -49309474 - L1M4 LINE L1 -2221 3925 3426 305 120 40 180 chr15 36386292 36386392 -49309362 - L1MB7 LINE L1 0 6184 6099 3123 200 36 64 chr15 36387073 36389001 -49306753 - L1ME1 LINE L1 -5 6161 4252 828 180 12 24 chr15 36389533 36389700 -49306054 - MER103 DNA DNA 0 166 2 336 315 18 27 chr15 36391818 36391929 -49303825 + MIR SINE MIR 29 138 -124 1797 168 3 3 chr15 36392015 36392319 -49303435 - AluJo SINE Alu -8 304 1 192 179 0 0 chr15 36392483 36392522 -49303232 + (TCCA)n Simple_repeat Simple_repeat 2 40 0 563 281 69 14 chr15 36392704 36392921 -49302833 - L1MC4a LINE L1 -1885 5923 5695 317 300 11 11 chr15 36393149 36393239 -49302515 - L2 LINE L2 -24 3289 3200 492 263 211 5 chr15 36393729 36393919 -49301835 + LTR16C LTR ERVL 263 491 0 197 318 111 0 chr15 36394060 36394123 -49301631 - L2 LINE L2 -52 3220 3151 1202 274 52 35 chr15 36394303 36394767 -49300987 - MLT1K LTR MaLR 0 588 117 21 36 0 0 chr15 36396094 36396122 -49299632 + AT_rich Low_complexity Low_complexity 1 28 0 2206 117 0 3 chr15 36396223 36396523 -49299231 - AluSx SINE Alu -13 299 1 240 245 20 10 chr15 36398113 36398211 -49297543 + (TA)n Simple_repeat Simple_repeat 2 100 0 380 299 68 26 chr15 36398217 36398444 -49297310 - L1ME4a LINE L1 -287 5834 5595 1805 163 0 10 chr15 36398444 36398751 -49297003 - AluJb SINE Alu -8 304 1 180 97 0 0 chr15 36399131 36399162 -49296592 + (TG)n Simple_repeat Simple_repeat 1 31 0 1574 181 20 7 chr15 36401952 36402244 -49293510 - AluSx SINE Alu -15 297 2 1205 216 113 0 chr15 36402295 36402587 -49293167 + MER58B DNA MER1_type 2 326 -15 261 274 0 0 chr15 36404123 36404185 -49291569 - MER5A DNA MER1_type 0 189 128 239 299 0 0 chr15 36404248 36404315 -49291439 + (TG)n Simple_repeat Simple_repeat 1 67 0 420 151 0 0 chr15 36404315 36404390 -49291364 - MER5A DNA MER1_type -111 78 4 2194 121 0 6 chr15 36406658 36407002 -49288752 + AluSq SINE Alu 1 342 0 1716 93 0 0 chr15 36408281 36408497 -49287257 - AluY SINE Alu -13 298 83 379 296 95 22 chr15 36408745 36408924 -49286830 + MIR3 SINE MIR 12 203 -5 2864 71 24 5 chr15 36409042 36409420 -49286334 - L1PA8 LINE L1 0 6172 5788 1331 104 16 0 chr15 36409420 36409613 -49286141 + L1P LINE L1 4635 4830 -1316 405 229 57 9 chr15 36409660 36409765 -49285989 - MIR SINE MIR -57 151 42 1238 118 20 5 chr15 36409910 36410105 -49285649 - L1MD3 LINE L1 -8 7987 7790 211 155 0 35 chr15 36412425 36412483 -49283271 + (TAG)n Simple_repeat Simple_repeat 1 56 0 363 270 102 46 chr15 36412498 36412694 -49283060 - MIR SINE MIR -5 257 51 281 287 140 24 chr15 36413353 36413517 -49282237 + MIR SINE MIR 30 212 -50 246 227 0 0 chr15 36413621 36413665 -49282089 - MER103 DNA DNA -49 117 74 1809 156 0 0 chr15 36413677 36413947 -49281807 + AluJo SINE Alu 13 282 -30 234 0 0 0 chr15 36413950 36413976 -49281778 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1232 186 0 18 chr15 36414053 36414274 -49281480 - AluSg/x SINE Alu -9 303 87 623 300 115 8 chr15 36414468 36414728 -49281026 - MLT1K LTR MaLR -274 314 27 357 328 68 34 chr15 36414799 36414976 -49280778 - MER5A DNA MER1_type 0 189 7 2359 55 17 0 chr15 36415041 36415330 -49280424 - AluY SINE Alu -16 295 2 467 290 124 0 chr15 36415462 36415624 -49280130 - MER5A DNA MER1_type 0 189 4 182 36 0 36 chr15 36415782 36415810 -49279944 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 858 127 0 0 chr15 36415813 36415931 -49279823 - AluSq/x SINE Alu -195 118 1 1177 155 77 10 chr15 36416221 36416428 -49279326 + MSTB LTR MaLR 1 221 -205 525 143 0 0 chr15 36416448 36416518 -49279236 - AluS SINE Alu -242 71 2 454 252 82 14 chr15 36416519 36416666 -49279088 - L2 LINE L2 -599 2715 2559 407 299 24 37 chr15 36416725 36416889 -49278865 + MIR SINE MIR 61 222 -40 288 270 112 26 chr15 36417027 36417179 -49278575 - MIR3 SINE MIR -9 199 35 903 130 0 43 chr15 36417267 36417405 -49278349 + FLAM_C SINE Alu 2 133 0 315 349 75 27 chr15 36417496 36417642 -49278112 - MIR SINE MIR -73 189 37 423 202 84 25 chr15 36418952 36419071 -49276683 + MIR SINE MIR 78 203 -59 2051 145 7 0 chr15 36419093 36419397 -49276357 - AluSx SINE Alu -6 306 1 535 281 67 29 chr15 36419497 36419707 -49276047 - MIR SINE MIR -27 235 18 318 357 80 45 chr15 36420077 36420363 -49275391 + L1MC4a LINE L1 5561 5856 -1952 1538 146 77 56 chr15 36420533 36420820 -49274934 + AluSx SINE Alu 5 297 -15 218 193 18 0 chr15 36420820 36420877 -49274877 + GA-rich Low_complexity Low_complexity 2 59 0 665 288 182 34 chr15 36420893 36421338 -49274416 + L3 LINE CR1 913 1423 -154 297 262 82 16 chr15 36421392 36421514 -49274240 + MIR SINE MIR 77 206 -56 216 304 0 14 chr15 36473261 36473330 -49222424 + (TG)n Simple_repeat Simple_repeat 1 68 0 359 358 86 30 chr15 36474310 36474542 -49221212 + MIR SINE MIR 12 256 -6 291 288 9 90 chr15 36476241 36476352 -49219402 - L2 LINE L2 -5 3267 3166 506 261 56 35 chr15 36476362 36476504 -49219250 - MIR3 SINE MIR -30 178 34 2199 103 7 10 chr15 36476582 36476882 -49218872 - AluSx SINE Alu -13 299 1 221 333 78 35 chr15 36478015 36478156 -49217598 + MIR SINE MIR 98 244 -18 25561 66 3 4 chr15 36478538 36481822 -49213932 - L1P LINE L1 -2861 3285 3 1186 181 84 58 chr15 36482279 36482518 -49213236 - MER33 DNA MER1_type -2267 318 67 1917 118 48 0 chr15 36482518 36482818 -49212936 - AluSx SINE Alu 0 313 1 1186 181 84 58 chr15 36482818 36482887 -49212867 - MER33 DNA MER1_type -2518 67 1 341 285 182 27 chr15 36482953 36483322 -49212432 - L1M4 LINE L1 -1542 4604 4179 673 198 6 38 chr15 36483330 36483487 -49212267 - MLT1F1 LTR MaLR -108 459 308 658 201 0 62 chr15 36483553 36483697 -49212057 - MLT1F1 LTR MaLR -282 285 151 434 207 56 29 chr15 36483682 36483789 -49211965 + MLT1F1 LTR MaLR 21 129 -445 * 308 284 50 30 chr15 36483941 36484142 -49211612 - L1M4 LINE L1 -3789 2357 2153 929 168 0 60 chr15 36484442 36484609 -49211145 - AluJo SINE Alu -30 282 126 810 290 116 52 chr15 36484781 36485020 -49210734 - HAL1b LINE L1 -520 828 606 2194 120 3 0 chr15 36485020 36485312 -49210442 - AluSg SINE Alu -16 294 2 810 290 116 52 chr15 36485312 36485449 -49210305 - HAL1b LINE L1 -742 606 479 2317 73 3 0 chr15 36485449 36485735 -49210019 - AluY SINE Alu -4 307 21 810 290 116 52 chr15 36485735 36486092 -49209662 - HAL1b LINE L1 -869 479 47 391 100 33 0 chr15 36486263 36486323 -49209431 - AluJ/FLAM SINE Alu -240 62 1 1487 165 92 26 chr15 36486509 36486782 -49208972 - AluJb SINE Alu -21 291 1 21 36 0 0 chr15 36487676 36487704 -49208050 + AT_rich Low_complexity Low_complexity 1 28 0 344 294 71 41 chr15 36487956 36488153 -49207601 - MIR SINE MIR 0 262 60 204 125 0 0 chr15 36488754 36488786 -49206968 + (TG)n Simple_repeat Simple_repeat 2 33 0 1999 115 22 26 chr15 36488860 36489172 -49206582 + AluSx SINE Alu 1 311 -1 223 91 23 23 chr15 36489438 36489482 -49206272 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 441 103 0 0 chr15 36489946 36490014 -49205740 + (TC)n Simple_repeat Simple_repeat 2 69 0 207 0 0 0 chr15 36490014 36490037 -49205717 + (CA)n Simple_repeat Simple_repeat 1 23 0 290 324 21 14 chr15 36490547 36490692 -49205062 - L2 LINE L2 -202 3070 2925 189 314 164 29 chr15 36490685 36490892 -49204862 - L2 LINE L2 -527 2787 2553 * 526 270 71 71 chr15 36491442 36491541 -49204213 + MER102b DNA MER1_type 1 99 -1329 2387 100 0 0 chr15 36491541 36491841 -49203913 - AluSx SINE Alu -10 302 3 526 270 71 71 chr15 36491841 36492078 -49203676 + MER102b DNA MER1_type 98 337 -4 184 297 47 16 chr15 36492371 36492435 -49203319 + MIR SINE MIR 87 152 -56 1979 148 16 19 chr15 36494057 36494368 -49201386 + AluJo SINE Alu 1 310 -2 285 264 84 39 chr15 36494379 36494557 -49201197 - L1ME LINE L1 -432 5689 5504 283 302 35 0 chr15 36494752 36494838 -49200916 + MIR SINE MIR 2 90 -172 617 209 75 65 chr15 36494844 36495046 -49200708 - MER20 DNA MER1_type 0 219 16 292 283 33 0 chr15 36495046 36495138 -49200616 + MIR SINE MIR 110 204 -58 234 243 114 0 chr15 36495370 36495440 -49200314 + L2 LINE L2 3232 3309 -4 1936 120 0 0 chr15 36495504 36495762 -49199992 - AluSx SINE Alu -46 266 9 21 0 0 0 chr15 36495856 36495877 -49199877 + AT_rich Low_complexity Low_complexity 1 21 0 190 293 95 35 chr15 36497517 36497633 -49198121 - L2 LINE L2 -8 3264 3142 2123 128 0 10 chr15 36497696 36498000 -49197754 + AluSx SINE Alu 12 312 0 702 129 0 0 chr15 36498171 36498272 -49197482 - AluJ/FLAM SINE Alu -210 102 2 188 372 62 9 chr15 36498435 36498548 -49197206 + L2 LINE L2 3154 3272 0 242 287 26 52 chr15 36499765 36499880 -49195874 + L2 LINE L2 3202 3313 0 204 359 9 38 chr15 36501065 36501171 -49194583 - MIR SINE MIR -72 190 88 753 181 23 0 chr15 36501288 36501421 -49194333 + FLAM_C SINE Alu 2 137 -6 1830 174 0 77 chr15 36502489 36502814 -49192940 - MLT1A1 LTR MaLR -2 363 71 2726 97 6 0 chr15 36502814 36503176 -49192578 - THE1B LTR MaLR 0 364 1 1830 174 0 77 chr15 36503176 36503242 -49192512 - MLT1A1 LTR MaLR -294 71 2 239 360 48 8 chr15 36504087 36504212 -49191542 + MLT1K LTR MaLR 14 143 -445 7285 49 5 5 chr15 36504216 36505211 -49190543 - L1PA8 LINE L1 0 6172 5214 700 278 74 0 chr15 36505220 36505396 -49190358 + MLT1A1 LTR MaLR 174 362 -3 1752 165 33 0 chr15 36507067 36507339 -49188415 + AluSx SINE Alu 1 281 -31 254 102 109 219 chr15 36507494 36507622 -49188132 - MER69 DNA AcHobo 0 2526 2413 2084 110 27 27 chr15 36507639 36507975 -49187779 - Tigger2 DNA MER2_type -32 2686 2351 786 144 8 8 chr15 36507982 36508107 -49187647 - Tigger2 DNA MER2_type -2593 125 1 547 259 142 29 chr15 36508107 36508423 -49187331 - MER69 DNA AcHobo -108 2418 2067 2097 114 7 0 chr15 36508423 36508736 -49187018 - AluSx SINE Alu 0 315 1 1610 232 67 34 chr15 36508746 36509182 -49186572 - MER69 DNA AcHobo -2076 450 1 183 42 0 0 chr15 36509536 36509560 -49186194 + (T)n Simple_repeat Simple_repeat 1 24 0 2257 54 3 44 chr15 36509693 36510023 -49185731 - AluY SINE Alu 0 318 1 673 281 97 72 chr15 36510072 36510503 -49185251 - MLT1K LTR MaLR -6 582 141 428 251 251 12 chr15 36510806 36511157 -49184597 - LTR16A1 LTR ERVL 0 450 4 2241 101 0 14 chr15 36511209 36511506 -49184248 - AluSg SINE Alu -17 293 1 570 274 103 55 chr15 36512342 36512634 -49183120 + MER102b DNA MER1_type 14 319 -22 292 299 16 8 chr15 36513713 36513840 -49181914 - AluSp SINE Alu -174 129 2 312 330 9 17 chr15 36514077 36514192 -49181562 - MIR SINE MIR -126 136 23 24 32 0 0 chr15 36514819 36514850 -49180904 + AT_rich Low_complexity Low_complexity 1 31 0 520 231 37 0 chr15 36514999 36515133 -49180621 - L1ME4a LINE L1 -205 5916 5778 220 388 9 0 chr15 36515500 36515616 -49180138 - MIR SINE MIR -62 146 30 251 175 18 0 chr15 36515688 36515745 -49180009 + GA-rich Low_complexity Low_complexity 3 60 0 797 108 16 49 chr15 36515745 36515930 -49179824 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 240 59 0 0 chr15 36516755 36516789 -49178965 + (TG)n Simple_repeat Simple_repeat 1 34 0 203 0 37 0 chr15 36517062 36517089 -49178665 + (TC)n Simple_repeat Simple_repeat 2 29 0 7667 186 53 63 chr15 36517516 36519288 -49176466 + MER52A LTR ERV1 1 1755 0 285 342 18 0 chr15 36519330 36519441 -49176313 + L2 LINE L2 2947 3059 -213 301 302 101 18 chr15 36519531 36519700 -49176054 - L1M4 LINE L1 -1226 4920 4738 1906 144 3 39 chr15 36519701 36520007 -49175747 - AluJb SINE Alu -17 295 1 2514 103 43 6 chr15 36520058 36520409 -49175345 - THE1B LTR MaLR 0 364 1 1584 98 5 0 chr15 36520409 36520624 -49175130 - THE1B-int LTR MaLR 0 1580 1365 1617 218 28 25 chr15 36520664 36520895 -49174859 - Zaphod DNA AcHobo -1 4030 3796 2185 116 0 7 chr15 36520895 36521212 -49174542 - AluSx SINE Alu 0 312 1 1617 218 28 25 chr15 36521212 36521415 -49174339 - Zaphod DNA AcHobo -235 3796 3595 * 1842 264 78 50 chr15 36521383 36522186 -49173568 - Zaphod DNA AcHobo -3150 881 56 183 295 143 9 chr15 36522525 36522630 -49173124 + L2 LINE L2 3178 3296 -17 1011 189 21 11 chr15 36522757 36522948 -49172806 + MLT1A1 LTR MaLR 173 365 0 3121 220 109 12 chr15 36523010 36523911 -49171843 + L1PBa LINE L1 6 993 -5870 6601 197 19 70 chr15 36523913 36525625 -49170129 - L1 LINE L1 -820 5326 3701 * 25714 101 9 10 chr15 36525614 36529302 -49166452 + L1P LINE L1 11 3694 -2452 3503 122 32 2 chr15 36529295 36529828 -49165926 + L1PB1 LINE L1 5337 5885 -266 * 304 197 26 40 chr15 36531783 36531859 -49163895 - MIR SINE MIR -108 154 80 1242 155 35 158 chr15 36534353 36534727 -49161027 - MLT1A1 LTR MaLR -37 328 1 370 272 5 122 chr15 36534906 36535119 -49160635 - MIR SINE MIR 0 262 75 324 259 12 0 chr15 36536205 36536290 -49159464 + MIR SINE MIR 177 262 0 346 333 0 25 chr15 36536298 36536418 -49159336 - MIR SINE MIR -55 153 37 199 350 100 12 chr15 36536430 36536510 -49159244 - L2 LINE L2 0 3272 3186 30 27 0 0 chr15 36536692 36536729 -49159025 + AT_rich Low_complexity Low_complexity 1 37 0 226 204 19 37 chr15 36536953 36536990 -49158764 + CT-rich Low_complexity Low_complexity 2 39 -15 1731 174 55 0 chr15 36536990 36537283 -49158471 - AluJb SINE Alu -1 311 3 226 204 19 37 chr15 36537283 36537299 -49158455 + CT-rich Low_complexity Low_complexity 39 54 0 334 335 132 17 chr15 36538739 36539035 -49156719 - L2 LINE L2 -9 3263 2934 2104 109 10 3 chr15 36539602 36539895 -49155859 - AluSx SINE Alu -15 297 3 640 200 26 74 chr15 36540131 36540321 -49155433 + LTR41 LTR ERVL 1 181 -592 428 163 25 70 chr15 36540618 36540762 -49154992 + LTR50 LTR ERVL 639 795 0 363 78 0 0 chr15 36540833 36540884 -49154870 + (TC)n Simple_repeat Simple_repeat 2 52 0 408 20 0 0 chr15 36540884 36540933 -49154821 + (CA)n Simple_repeat Simple_repeat 1 49 0 299 311 34 20 chr15 36540977 36541125 -49154629 - LTR16C LTR ERVL 0 491 342 24 0 0 0 chr15 36541314 36541338 -49154416 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr15 36544997 36545018 -49150736 + AT_rich Low_complexity Low_complexity 1 21 0 249 173 0 39 chr15 36546754 36546806 -49148948 - L2 LINE L2 -81 3232 3183 2510 71 0 0 chr15 36546907 36547216 -49148538 - AluY SINE Alu -2 309 1 1389 232 18 6 chr15 36547791 36548119 -49147635 + MER46C DNA MER2_type 6 337 -1 790 234 88 0 chr15 36548364 36548569 -49147185 - L1MB7 LINE L1 -9 6175 5953 214 318 16 16 chr15 36548653 36548716 -49147038 - MIR SINE MIR -180 82 20 239 262 54 77 chr15 36548721 36548889 -49146865 + L3 LINE CR1 1413 1576 -1 2093 107 10 10 chr15 36549895 36550186 -49145568 - AluSx SINE Alu -21 291 1 332 259 0 56 chr15 36550209 36550317 -49145437 - MIR SINE MIR -113 149 48 352 247 24 24 chr15 36550366 36550451 -49145303 - MIR SINE MIR -163 99 15 3248 129 44 30 chr15 36550585 36551127 -49144627 - MER21A LTR ERV1 -6 925 376 1308 136 99 16 chr15 36551133 36551376 -49144378 - MER21A LTR ERV1 -668 263 1 28 0 0 0 chr15 36551796 36551824 -49143930 + AT_rich Low_complexity Low_complexity 1 28 0 2051 122 0 3 chr15 36551824 36552118 -49143636 - AluSx SINE Alu -19 293 1 488 266 79 78 chr15 36552439 36552606 -49143148 + L1MC4a LINE L1 5429 5594 -527 2010 133 7 17 chr15 36552606 36552907 -49142847 + AluJb SINE Alu 1 298 -14 488 266 79 78 chr15 36552907 36553309 -49142445 + L1MC4a LINE L1 5594 6016 -105 395 241 56 9 chr15 36553496 36553604 -49142150 + MIR SINE MIR 94 206 -56 2201 118 0 0 chr15 36553898 36554195 -49141559 + AluSx SINE Alu 2 298 -14 244 269 13 13 chr15 36555207 36555285 -49140469 - MIR SINE MIR -13 249 172 2094 123 10 0 chr15 36555696 36555997 -49139757 - AluSx SINE Alu -4 308 5 216 0 0 0 chr15 36556745 36556769 -49138985 + (TG)n Simple_repeat Simple_repeat 1 24 0 842 172 41 7 chr15 36556815 36556960 -49138794 + AluJo SINE Alu 119 268 -44 195 42 0 0 chr15 36556966 36556990 -49138764 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 185 297 40 0 chr15 36558551 36558625 -49137129 - L3 LINE CR1 -612 965 889 1083 229 11 105 chr15 36558638 36558752 -49137002 - MLT1A2 LTR MaLR -51 323 200 2248 93 20 7 chr15 36558752 36559053 -49136701 - AluSc SINE Alu -4 305 1 1083 229 11 105 chr15 36559053 36559291 -49136463 - MLT1A2 LTR MaLR -174 200 4 490 290 44 41 chr15 36559566 36559907 -49135847 - L1ME4a LINE L1 -217 5904 5563 32 0 0 0 chr15 36559930 36559962 -49135792 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr15 36560005 36560028 -49135726 + AT_rich Low_complexity Low_complexity 1 23 0 323 305 78 7 chr15 36560028 36560169 -49135585 - L1ME4a LINE L1 -217 5904 5754 189 0 0 0 chr15 36560246 36560267 -49135487 + (T)n Simple_repeat Simple_repeat 1 21 0 28 29 0 0 chr15 36561201 36561236 -49134518 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr15 36561512 36561548 -49134206 + AT_rich Low_complexity Low_complexity 1 36 0 339 355 5 11 chr15 36561907 36562096 -49133658 - L1ME4a LINE L1 -1482 4664 4477 25 31 0 0 chr15 36562529 36562561 -49133193 + AT_rich Low_complexity Low_complexity 1 32 0 2776 159 13 54 chr15 36562580 36563137 -49132617 + L1MA8 LINE L1 5599 6134 -157 927 278 86 19 chr15 36563329 36563893 -49131861 - L1MC4 LINE L1 -377 7431 7019 51 0 0 0 chr15 36563979 36564030 -49131724 + AT_rich Low_complexity Low_complexity 1 51 0 2152 122 7 0 chr15 36564037 36564332 -49131422 + AluSx SINE Alu 1 297 -15 851 132 0 0 chr15 36564336 36564450 -49131304 - AluJb SINE Alu -198 114 1 731 231 133 8 chr15 36564455 36564711 -49131043 - L1MC4 LINE L1 -964 7078 6791 32 57 0 0 chr15 36565249 36565302 -49130452 + AT_rich Low_complexity Low_complexity 1 53 0 182 143 20 0 chr15 36565445 36565494 -49130260 + (TA)n Simple_repeat Simple_repeat 2 51 0 226 274 0 0 chr15 36565507 36565569 -49130185 - L1 LINE L1 -1355 4791 4730 332 50 0 0 chr15 36565835 36565875 -49129879 + L1MA4A LINE L1 6251 6290 -13 2031 125 30 3 chr15 36566151 36566448 -49129306 - AluSx SINE Alu -7 305 1 248 303 91 20 chr15 36566551 36566727 -49129027 + MIR SINE MIR 2 241 -21 207 0 0 0 chr15 36567537 36567560 -49128194 + (A)n Simple_repeat Simple_repeat 1 23 0 321 120 0 0 chr15 36568001 36568051 -49127703 + L1ME3A LINE L1 6115 6164 -6 755 279 123 31 chr15 36568096 36568454 -49127300 - L2 LINE L2 -359 2955 2565 589 271 33 11 chr15 36568455 36568635 -49127119 - L1M2 LINE L1 -388 5782 5611 749 284 87 32 chr15 36568702 36568799 -49126955 + LTR16C LTR ERVL 85 175 -316 1717 178 30 41 chr15 36568799 36569165 -49126589 + MLT1A1 LTR MaLR 4 365 0 749 284 87 32 chr15 36569165 36569377 -49126377 + LTR16C LTR ERVL 175 411 -80 2299 107 3 0 chr15 36569866 36570176 -49125578 + AluY SINE Alu 1 311 0 366 304 88 12 chr15 36570534 36570553 -49125201 - L2 LINE L2 -9 3304 3288 2230 102 0 16 chr15 36570553 36570856 -49124898 + AluSq SINE Alu 1 298 -15 366 304 88 12 chr15 36570856 36571007 -49124747 - L2 LINE L2 -25 3288 3121 390 316 90 18 chr15 36571747 36572030 -49123724 - LTR16A1 LTR ERVL -86 379 82 185 146 21 0 chr15 36572062 36572110 -49123644 + CT-rich Low_complexity Low_complexity 2 50 0 522 207 0 0 chr15 36572123 36572292 -49123462 + CT-rich Low_complexity Low_complexity 1 169 0 263 113 19 0 chr15 36572300 36572353 -49123401 + (CA)n Simple_repeat Simple_repeat 2 55 0 2076 144 0 0 chr15 36574177 36574476 -49121278 - AluSx SINE Alu -13 299 1 269 223 52 99 chr15 36574487 36574650 -49121104 - MIR SINE MIR -56 206 47 2062 121 13 20 chr15 36574770 36575076 -49120678 + AluSx SINE Alu 1 304 -8 462 329 7 0 chr15 36575557 36575700 -49120054 - MIR3 SINE MIR -24 184 41 285 310 26 17 chr15 36575722 36575838 -49119916 - MIR SINE MIR -46 216 100 1626 196 3 20 chr15 36575894 36576195 -49119559 - AluJo SINE Alu -16 296 1 907 143 0 0 chr15 36576204 36576330 -49119424 - FLAM_C SINE Alu -6 127 2 308 271 14 79 chr15 36576487 36576627 -49119127 - L2 LINE L2 0 3313 3183 462 311 55 11 chr15 36577158 36577341 -49118413 - MER117 DNA MER1_type -6 191 1 2451 85 3 0 chr15 36577645 36577952 -49117802 + AluSp SINE Alu 1 308 -5 229 379 24 30 chr15 36578327 36578496 -49117258 + L3 LINE CR1 939 1106 -471 531 204 0 99 chr15 36578575 36578737 -49117017 - MER69 DNA AcHobo 0 2526 2381 240 318 151 40 chr15 36579030 36579282 -49116472 + L3 LINE CR1 1294 1573 -4 1227 105 6 0 chr15 36579511 36579682 -49116072 - AluSg/x SINE Alu -6 304 133 2228 93 3 3 chr15 36579682 36579972 -49115782 - AluSq SINE Alu -21 292 3 671 286 123 22 chr15 36579978 36580254 -49115500 + MLT1K LTR MaLR 245 548 -40 2306 206 34 8 chr15 36580919 36581418 -49114336 - Tigger6 DNA MER2_type 0 1597 1086 1867 162 3 10 chr15 36582027 36582323 -49113431 - AluJb SINE Alu -14 298 5 27 62 0 0 chr15 36582437 36582485 -49113269 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr15 36582609 36582633 -49113121 + AT_rich Low_complexity Low_complexity 1 24 0 808 260 103 62 chr15 36582693 36582962 -49112792 - L1ME3A LINE L1 -219 5934 5678 420 284 85 11 chr15 36582962 36583138 -49112616 - MER5A DNA MER1_type 0 189 1 808 260 103 62 chr15 36583138 36583230 -49112524 - L1ME3A LINE L1 -475 5678 5591 4202 11 4 2 chr15 36583230 36583682 -49112072 - L1PA3 LINE L1 -5 6150 5698 808 260 103 62 chr15 36583682 36583822 -49111932 - L1ME3A LINE L1 -562 5591 5411 536 283 50 24 chr15 36583844 36584141 -49111613 - L1ME3A LINE L1 -933 5196 4892 603 296 139 28 chr15 36584153 36584721 -49111033 - L1ME3A LINE L1 -1543 4586 3956 1471 278 91 25 chr15 36584768 36585573 -49110181 - L1ME3A LINE L1 -2584 3545 2632 2281 250 73 15 chr15 36585573 36586165 -49109589 + MLT1E2 LTR MaLR 1 626 0 1471 278 91 25 chr15 36586165 36586401 -49109353 - L1ME3A LINE L1 -3497 2632 2413 323 253 16 95 chr15 36586417 36586504 -49109250 - L1ME3A LINE L1 -3947 2182 2116 2279 76 3 0 chr15 36586504 36586792 -49108962 - AluY SINE Alu -22 289 1 323 253 16 95 chr15 36586792 36586894 -49108860 - L1ME3A LINE L1 -4013 2116 2008 33 43 0 0 chr15 36586983 36587030 -49108724 + AT_rich Low_complexity Low_complexity 1 47 0 27 49 0 0 chr15 36587111 36587152 -49108602 + AT_rich Low_complexity Low_complexity 1 41 0 485 183 0 0 chr15 36587163 36587234 -49108520 - FLAM_A SINE Alu -25 117 47 681 306 125 46 chr15 36587312 36588349 -49107405 - L1MEd LINE L1 -4585 1725 488 1709 127 27 123 chr15 36588349 36588681 -49107073 - AluJb SINE Alu 0 302 3 681 306 125 46 chr15 36588681 36589210 -49106544 - L1MEd LINE L1 -5822 488 2 613 261 7 14 chr15 36591064 36591206 -49104548 + MLT1E LTR MaLR 3 143 -450 1264 223 29 41 chr15 36591232 36591577 -49104177 + MLT2C1 LTR ERVL 57 397 0 1125 219 133 58 chr15 36591579 36591977 -49103777 + MLT1E LTR MaLR 140 593 0 233 182 0 23 chr15 36592158 36592202 -49103552 - MLT1K LTR MaLR -357 231 189 21 0 0 0 chr15 36594261 36594282 -49101472 + AT_rich Low_complexity Low_complexity 1 21 0 234 250 50 0 chr15 36594718 36594778 -49100976 - L2 LINE L2 0 3272 3210 681 212 0 0 chr15 36594875 36594993 -49100761 + FLAM_C SINE Alu 1 118 -15 1936 147 23 13 chr15 36595165 36595472 -49100282 - AluSx SINE Alu 0 312 3 300 289 125 0 chr15 36595531 36595635 -49100119 - MER94 DNA DNA -7 127 11 1349 153 23 14 chr15 36595843 36596059 -49099695 - MER20 DNA MER1_type -1 218 1 30 0 0 0 chr15 36596193 36596223 -49099531 + AT_rich Low_complexity Low_complexity 1 30 0 1431 183 50 37 chr15 36596231 36596531 -49099223 + AluJo SINE Alu 1 304 -8 14496 29 2 1 chr15 36596834 36599220 -49096534 - L1PA4 LINE L1 -1 6154 3765 417 295 101 8 chr15 36600639 36600768 -49094986 + L2 LINE L2 3126 3266 -6 194 314 0 0 chr15 36601065 36601116 -49094638 + MIR SINE MIR 210 260 -2 1276 162 0 0 chr15 36601840 36602038 -49093716 + AluSg/x SINE Alu 109 306 -6 26 0 0 0 chr15 36603721 36603747 -49092007 + AT_rich Low_complexity Low_complexity 1 26 0 775 149 18 0 chr15 36603824 36603938 -49091816 - FLAM_A SINE Alu -21 121 6 480 282 11 109 chr15 36604109 36604397 -49091357 + L2 LINE L2 2397 2750 -564 236 236 112 0 chr15 36604872 36604961 -49090793 + AluS SINE Alu 2 100 -202 238 274 14 0 chr15 36605142 36605215 -49090539 - L1ME LINE L1 -420 5701 5628 258 266 0 16 chr15 36605226 36605290 -49090464 + CT-rich Low_complexity Low_complexity 3 65 0 585 180 33 0 chr15 36605305 36605427 -49090327 + LTR37A LTR ERV1 301 426 0 2381 232 74 19 chr15 36606295 36607514 -49088240 + L1MC4 LINE L1 6459 7897 -145 284 273 0 0 chr15 36607581 36607647 -49088107 - L1ME LINE L1 -503 5618 5553 632 179 172 13 chr15 36608325 36608476 -49087278 - MER5A DNA MER1_type 0 189 15 2045 117 0 14 chr15 36608492 36608782 -49086972 + AluSx SINE Alu 1 286 -26 306 0 0 0 chr15 36608789 36608823 -49086931 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 1779 166 20 0 chr15 36609062 36609357 -49086397 + AluJo SINE Alu 1 301 -11 901 145 12 16 chr15 36609380 36609627 -49086127 + GA-rich Low_complexity Low_complexity 1 246 0 40 21 0 0 chr15 36609904 36609951 -49085803 + AT_rich Low_complexity Low_complexity 1 47 0 338 211 0 0 chr15 36610116 36610173 -49085581 - AluJo SINE Alu -11 291 235 1361 123 9 9 chr15 36610173 36610384 -49085370 - MER41B LTR ERV1 0 635 425 31 44 0 0 chr15 36610391 36610436 -49085318 + AT_rich Low_complexity Low_complexity 1 45 0 2975 102 16 7 chr15 36610436 36610867 -49084887 - MER41B LTR ERV1 -200 435 1 1237 194 0 37 chr15 36610868 36611110 -49084644 - AluJo SINE Alu -75 237 5 399 284 0 75 chr15 36611163 36611297 -49084457 - MIR SINE MIR -108 154 31 229 65 0 0 chr15 36611360 36611406 -49084348 - LTR66 LTR ERVL -171 439 394 220 321 0 0 chr15 36611492 36611545 -49084209 - MIR SINE MIR -163 99 47 2219 97 38 0 chr15 36611898 36612188 -49083566 - AluSx SINE Alu -11 301 1 204 40 0 0 chr15 36612696 36612721 -49083033 + (A)n Simple_repeat Simple_repeat 1 25 0 278 345 58 14 chr15 36612749 36612888 -49082866 + L2 LINE L2 2920 3064 -208 743 281 60 18 chr15 36612914 36613258 -49082496 - MLT1I LTR MaLR -19 390 1 2197 113 3 3 chr15 36613480 36613781 -49081973 - AluSx SINE Alu -9 303 3 26 64 0 0 chr15 36614670 36614717 -49081037 + AT_rich Low_complexity Low_complexity 1 47 0 300 297 84 128 chr15 36615254 36615420 -49080334 - L2 LINE L2 0 3272 3123 2343 148 31 96 chr15 36615420 36615510 -49080244 + MSTB2 LTR MaLR 2 96 -361 2501 77 0 3 chr15 36615510 36615820 -49079934 + AluSg SINE Alu 1 309 -1 2343 148 31 96 chr15 36615820 36616217 -49079537 + MSTB2 LTR MaLR 96 457 0 300 297 84 128 chr15 36616217 36616346 -49079408 - L2 LINE L2 -149 3123 2990 1870 96 67 32 chr15 36616395 36616677 -49079077 + AluSx SINE Alu 1 292 -20 456 51 0 0 chr15 36616689 36616748 -49079006 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 509 152 13 0 chr15 36616817 36616896 -49078858 + MSTC LTR MaLR 1 80 -348 925 185 0 0 chr15 36616896 36617067 -49078687 - AluJb SINE Alu 0 304 134 1964 156 0 10 chr15 36617067 36617368 -49078386 - AluJo SINE Alu -14 298 1 1476 215 71 0 chr15 36617368 36617694 -49078060 + MSTC LTR MaLR 68 416 -12 870 338 184 10 chr15 36617732 36618455 -49077299 - L2 LINE L2 -559 2755 1907 2302 98 3 3 chr15 36620076 36620382 -49075372 - AluSp SINE Alu -7 306 1 945 189 18 0 chr15 36620690 36620882 -49074872 + AluJb SINE Alu 113 307 0 738 247 31 0 chr15 36621033 36621195 -49074559 + MIR SINE MIR 48 214 -48 3743 88 14 2 chr15 36621990 36622481 -49073273 - L1PA10 LINE L1 -6 6162 5666 682 288 210 23 chr15 36622522 36622994 -49072760 + L1MC4a LINE L1 5513 6072 -1736 1850 154 34 0 chr15 36623080 36623373 -49072381 - AluJb SINE Alu -9 303 1 286 146 0 0 chr15 36624394 36624442 -49071312 + L2 LINE L2 3261 3308 -5 391 333 85 16 chr15 36624458 36624704 -49071050 - L3 LINE CR1 -4 1573 1311 1759 153 83 0 chr15 36624908 36625196 -49070558 + AluJb SINE Alu 1 312 0 243 0 0 0 chr15 36625271 36625298 -49070456 + (TG)n Simple_repeat Simple_repeat 2 28 0 2485 87 0 0 chr15 36625369 36625680 -49070074 - AluY SINE Alu 0 311 1 2363 233 157 48 chr15 36625696 36626008 -49069746 + L2 LINE L2 1157 1434 -1880 2624 213 54 6 chr15 36626008 36626549 -49069205 + MLT1F1 LTR MaLR 1 567 0 2363 233 157 48 chr15 36626549 36627142 -49068612 + L2 LINE L2 1434 2161 -1153 1124 175 25 66 chr15 36627421 36627859 -49067895 - MLT1A1 LTR MaLR 0 374 1 677 179 136 0 chr15 36627883 36628023 -49067731 - MER20 DNA MER1_type -60 159 1 234 0 0 0 chr15 36628031 36628057 -49067697 + (TG)n Simple_repeat Simple_repeat 2 27 0 478 323 41 31 chr15 36628920 36629115 -49066639 - MIR3 SINE MIR -10 198 2 2039 123 0 4 chr15 36630252 36630528 -49065226 + AluSx SINE Alu 1 275 -37 1183 49 11 27 chr15 36630535 36630718 -49065036 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1244 188 14 31 chr15 36630834 36631057 -49064697 - MER20 DNA MER1_type 0 219 1 546 321 57 12 chr15 36631405 36631651 -49064103 - L2 LINE L2 -60 3253 2997 566 264 67 19 chr15 36631709 36631917 -49063837 - L1ME3 LINE L1 -4 6158 5941 271 283 19 47 chr15 36632636 36632742 -49063012 + MIR SINE MIR 65 167 -95 200 98 0 49 chr15 36632754 36632795 -49062959 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 221 279 89 0 chr15 36633375 36633465 -49062289 - MIR SINE MIR -94 114 19 366 203 13 13 chr15 36633486 36633565 -49062189 - LTR67 LTR ERVL -6 551 473 655 248 79 65 chr15 36633566 36633629 -49062125 + L1MC4 LINE L1 7201 7262 -780 2308 101 3 7 chr15 36633629 36633935 -49061819 - AluSp SINE Alu -8 305 1 655 248 79 65 chr15 36633935 36634707 -49061047 + L1MC4 LINE L1 7262 7980 -62 268 281 0 0 chr15 36635048 36635112 -49060642 - LTR67 LTR ERVL -379 178 115 2269 102 3 6 chr15 36635290 36635603 -49060151 + AluSp SINE Alu 2 313 0 22 43 0 21 chr15 36635616 36635642 -49060112 + AT_rich Low_complexity Low_complexity 1 27 -19 1877 130 4 11 chr15 36635642 36635919 -49059835 + AluJb SINE Alu 17 291 -21 22 43 0 21 chr15 36635919 36635939 -49059815 + AT_rich Low_complexity Low_complexity 27 46 0 2174 133 3 0 chr15 36636125 36636434 -49059320 + AluSx SINE Alu 1 310 -2 735 314 64 60 chr15 36636828 36637392 -49058362 + L2 LINE L2 2380 2945 -369 1765 202 106 6 chr15 36637459 36637816 -49057938 - MSTD LTR MaLR -3 393 1 455 286 40 0 chr15 36637909 36638035 -49057719 + L2 LINE L2 3137 3267 -5 2208 123 0 0 chr15 36639048 36639348 -49056406 + AluSx SINE Alu 1 300 -12 258 274 16 0 chr15 36639647 36639709 -49056045 + MIR3 SINE MIR 106 168 -40 367 233 149 52 chr15 36640171 36640365 -49055389 + L1ME4a LINE L1 5766 5998 -123 1604 189 0 43 chr15 36640365 36640688 -49055066 + AluJo SINE Alu 1 309 -3 367 233 149 52 chr15 36640688 36640781 -49054973 + L1ME4a LINE L1 5998 6081 -40 323 246 15 0 chr15 36640908 36640973 -49054781 - MER58 DNA MER1_type 0 2420 2355 1513 164 39 68 chr15 36640986 36641369 -49054385 + THE1C LTR MaLR 1 372 -3 2378 95 0 13 chr15 36642890 36643207 -49052547 - AluSp SINE Alu 0 313 1 374 331 96 0 chr15 36643768 36643934 -49051820 - L2 LINE L2 -219 3053 2872 1000 231 77 0 chr15 36644176 36644384 -49051370 - MIR SINE MIR -32 230 7 1421 84 0 0 chr15 36644726 36644904 -49050850 - AluSp SINE Alu -135 178 1 2190 114 0 0 chr15 36646290 36646579 -49049175 + AluSx SINE Alu 1 289 -23 453 224 6 146 chr15 36646670 36646825 -49048929 + MIR SINE MIR 2 131 -77 1818 112 0 0 chr15 36646825 36647066 -49048688 + AluSq SINE Alu 47 287 -26 453 224 6 146 chr15 36647066 36647083 -49048671 + MIR SINE MIR 131 149 -59 1386 159 43 0 chr15 36647087 36647319 -49048435 + MSTB LTR MaLR 185 426 0 683 162 26 0 chr15 36647319 36647432 -49048322 - MSTD LTR MaLR -280 116 1 1996 109 7 14 chr15 36647836 36648119 -49047635 + AluSq SINE Alu 19 299 -14 287 304 74 0 chr15 36649220 36649355 -49046399 - MER117 DNA MER1_type 0 197 53 1699 144 10 41 chr15 36649876 36650168 -49045586 + AluJo SINE Alu 17 299 -13 227 265 80 84 chr15 36650952 36651190 -49044564 + L1ME4a LINE L1 5874 6110 -11 1647 123 4 4 chr15 36651217 36651445 -49044309 - AluSx SINE Alu -84 228 1 2257 101 0 7 chr15 36651719 36652027 -49043727 - AluY SINE Alu -5 306 1 2137 99 0 0 chr15 36652753 36653075 -49042679 - AluSx SINE Alu 0 332 11 1771 141 28 3 chr15 36653278 36653561 -49042193 + AluSx SINE Alu 1 290 -22 1128 210 40 98 chr15 36653748 36653843 -49041911 - MLT1L LTR MaLR -17 598 499 2089 112 0 26 chr15 36653843 36654148 -49041606 + AluY SINE Alu 1 297 -14 1128 210 40 98 chr15 36654148 36654480 -49041274 - MLT1L LTR MaLR -116 499 196 249 147 27 120 chr15 36654536 36654611 -49041143 - MLT1L LTR MaLR -543 72 5 2042 117 0 52 chr15 36654657 36654981 -49040773 - AluSg SINE Alu -3 307 1 180 0 0 0 chr15 36655692 36655712 -49040042 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 2292 111 0 0 chr15 36655890 36656188 -49039566 - AluSx SINE Alu -14 298 1 364 278 63 16 chr15 36656222 36656348 -49039406 - MER5A DNA MER1_type -30 159 28 2286 89 7 3 chr15 36656732 36657024 -49038730 + AluSp SINE Alu 1 293 -20 505 147 129 60 chr15 36657131 36657247 -49038507 - L2 LINE L2 -21 3292 3169 2225 110 7 3 chr15 36657519 36657820 -49037934 + AluSp SINE Alu 1 302 -11 807 127 35 12 chr15 36657820 36657993 -49037761 + GA-rich Low_complexity Low_complexity 1 177 0 1250 149 77 5 chr15 36658087 36658309 -49037445 + AluJo SINE Alu 48 285 -27 2104 147 0 0 chr15 36658377 36658683 -49037071 + AluSx SINE Alu 1 306 -6 26 0 0 0 chr15 36660366 36660392 -49035362 + AT_rich Low_complexity Low_complexity 1 26 0 775 149 18 0 chr15 36660469 36660583 -49035171 - FLAM_A SINE Alu -21 121 6 480 282 11 109 chr15 36660754 36661042 -49034712 + L2 LINE L2 2397 2750 -564 1994 143 19 7 chr15 36661524 36661832 -49033922 + AluSx SINE Alu 1 312 0 2109 126 7 3 chr15 36661882 36662184 -49033570 + AluSq SINE Alu 1 303 -10 2438 221 22 19 chr15 36662365 36662904 -49032850 + MLT1E3 LTR MaLR 47 618 -6 197 244 70 43 chr15 36663194 36663309 -49032445 + L2 LINE L2 3099 3216 -97 3197 206 61 10 chr15 36663389 36664073 -49031681 + L1ME1 LINE L1 5448 6166 0 2327 87 3 7 chr15 36664089 36664398 -49031356 + AluSq SINE Alu 1 308 -5 27 49 0 0 chr15 36664539 36664580 -49031174 + AT_rich Low_complexity Low_complexity 1 41 0 2184 125 0 0 chr15 36664645 36664948 -49030806 - AluSx SINE Alu -9 303 1 22 0 0 0 chr15 36666387 36666409 -49029345 + AT_rich Low_complexity Low_complexity 1 22 0 2098 108 31 7 chr15 36666558 36666846 -49028908 + AluSx SINE Alu 1 295 -17 22 70 0 0 chr15 36668360 36668403 -49027351 + AT_rich Low_complexity Low_complexity 1 43 0 2106 115 0 0 chr15 36670108 36670394 -49025360 + AluSx SINE Alu 1 286 -26 230 326 76 0 chr15 36670966 36671058 -49024696 - MIR SINE MIR -74 134 36 25 31 0 0 chr15 36671774 36671806 -49023948 + AT_rich Low_complexity Low_complexity 1 32 0 2322 96 7 0 chr15 36672622 36672923 -49022831 + AluSx SINE Alu 1 303 -9 464 125 0 0 chr15 36673189 36673253 -49022501 - AluSp/q SINE Alu -12 301 238 271 231 46 100 chr15 36673473 36673571 -49022183 + L2 LINE L2 3186 3277 -36 5168 113 32 30 chr15 36673571 36674348 -49021406 - MER4E LTR ERV1 0 779 1 271 231 46 100 chr15 36674348 36674379 -49021375 + L2 LINE L2 3277 3308 -5 586 167 83 8 chr15 36674415 36674522 -49021232 - Tigger7 DNA MER2_type 0 2487 2372 1626 187 60 55 chr15 36674522 36674907 -49020847 + MSTB LTR MaLR 1 387 -39 2108 137 3 10 chr15 36676815 36677129 -49018625 - AluSx SINE Alu 0 312 1 2194 103 6 26 chr15 36677532 36677843 -49017911 - AluSx SINE Alu -7 305 1 2103 95 53 3 chr15 36677975 36678260 -49017494 + AluSx SINE Alu 1 299 -13 826 105 9 9 chr15 36678260 36678374 -49017380 - AluSq/x SINE Alu -198 114 1 289 268 57 81 chr15 36678484 36678607 -49017147 - MIR3 SINE MIR -7 201 82 1804 157 4 0 chr15 36679586 36679866 -49015888 + AluSx SINE Alu 1 281 -31 1979 96 50 7 chr15 36679891 36680173 -49015581 - AluSx SINE Alu -18 294 1 343 259 129 24 chr15 36680174 36680344 -49015410 - L1MC5 LINE L1 -50 7911 7724 2288 107 0 0 chr15 36680424 36680722 -49015032 - AluSg SINE Alu -12 298 1 267 320 39 45 chr15 36680811 36680967 -49014787 + MIR3 SINE MIR 51 205 -3 4153 87 31 0 chr15 36681719 36682269 -49013485 - L1PA10 LINE L1 -17 6151 5585 1836 86 4 8 chr15 36682389 36682646 -49013108 + L1PA14 LINE L1 5599 5854 -307 183 42 0 0 chr15 36683687 36683711 -49012043 + (A)n Simple_repeat Simple_repeat 1 24 0 1877 163 0 10 chr15 36684009 36684315 -49011439 + AluJo SINE Alu 2 304 -8 763 140 0 26 chr15 36684411 36684525 -49011229 + AluSq SINE Alu 144 254 -59 259 301 192 21 chr15 36684552 36684745 -49011009 - L2 LINE L2 -456 2858 2633 430 209 219 50 chr15 36684824 36684897 -49010857 - MIR SINE MIR -23 239 180 2129 110 10 0 chr15 36684897 36685196 -49010558 + AluSq SINE Alu 1 302 -11 430 209 219 50 chr15 36685196 36685327 -49010427 - MIR SINE MIR -82 180 11 651 297 117 50 chr15 36685328 36685826 -49009928 - L2 LINE L2 -746 2568 2022 1703 169 17 7 chr15 36685826 36685944 -49009810 + AluJb SINE Alu 1 116 -196 225 0 0 0 chr15 36685944 36685969 -49009785 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1703 169 17 7 chr15 36685969 36686152 -49009602 + AluJb SINE Alu 116 305 -7 651 297 117 50 chr15 36686152 36686249 -49009505 - L2 LINE L2 -1292 2022 1933 493 102 25 195 chr15 36686373 36686491 -49009263 - FLAM_C SINE Alu -25 118 21 334 0 0 0 chr15 36686520 36686560 -49009194 + L1P3 LINE L1 5646 5685 -487 1519 166 19 19 chr15 36686766 36687037 -49008717 - AluJb SINE Alu -41 271 1 377 226 348 12 chr15 36687179 36687343 -49008411 - MIR SINE MIR 0 262 44 233 250 29 0 chr15 36687866 36687934 -49007820 - L1MC/D LINE L1 -1927 5881 5812 926 164 36 11 chr15 36688266 36688490 -49007264 + AluJb SINE Alu 1 300 -12 373 250 69 31 chr15 36688516 36688676 -49007078 - L1MC/D LINE L1 -2283 5525 5360 1227 173 28 85 chr15 36688676 36688959 -49006795 - AluJo SINE Alu -8 304 38 243 329 34 29 chr15 36689152 36689359 -49006395 - L1MC/D LINE L1 -978 5168 4961 1703 144 9 82 chr15 36689417 36689736 -49006018 + AluJb SINE Alu 5 300 -12 2022 134 7 7 chr15 36689736 36690042 -49005712 + AluSg SINE Alu 1 306 -4 606 207 0 14 chr15 36690965 36691105 -49004649 + AluSc SINE Alu 157 294 -15 34 24 0 0 chr15 36691456 36691497 -49004257 + AT_rich Low_complexity Low_complexity 1 41 0 915 160 0 7 chr15 36691914 36692064 -49003690 - FRAM SINE Alu -12 164 16 597 135 0 31 chr15 36692068 36692164 -49003590 + FRAM SINE Alu 73 165 -11 521 122 0 0 chr15 36692231 36692305 -49003449 + AluJ/FLAM SINE Alu 2 75 -237 574 134 0 0 chr15 36692305 36692387 -49003367 - AluJb SINE Alu -95 217 136 861 208 6 12 chr15 36692501 36692669 -49003085 + FRAM SINE Alu 1 167 -9 747 209 0 0 chr15 36692746 36692875 -49002879 - FLAM_A SINE Alu -2 131 3 2115 114 7 0 chr15 36692911 36693200 -49002554 - AluSq SINE Alu -22 291 1 421 259 123 25 chr15 36693287 36693523 -49002231 - L2 LINE L2 -5 3308 3050 907 185 0 23 chr15 36693523 36693696 -49002058 + FRAM SINE Alu 1 169 -7 222 62 0 0 chr15 36693716 36693748 -49002006 + (CA)n Simple_repeat Simple_repeat 2 33 0 428 262 93 63 chr15 36693752 36693809 -49001945 - L2 LINE L2 -253 3060 3006 1706 172 17 14 chr15 36693809 36694105 -49001649 + AluJo SINE Alu 1 297 -15 428 262 93 63 chr15 36694105 36694284 -49001470 - L2 LINE L2 -307 3006 2817 1925 123 3 48 chr15 36694904 36695214 -49000540 + AluSx SINE Alu 1 296 -16 247 205 51 51 chr15 36695246 36695317 -49000437 + MLT1J LTR MaLR 376 446 -65 2149 174 23 23 chr15 36695317 36695713 -49000041 - MER57A LTR ERV1 0 403 8 2882 180 73 44 chr15 36695866 36696531 -48999223 + LTR8A LTR ERV1 9 727 0 872 205 111 156 chr15 36696636 36696797 -48998957 - LTR8A LTR ERV1 -4 723 556 2019 134 79 18 chr15 36696797 36697140 -48998614 - THE1B LTR MaLR 0 364 1 872 205 111 156 chr15 36697140 36697532 -48998222 - LTR8A LTR ERV1 -171 556 211 4039 109 4 0 chr15 36697532 36698084 -48997670 + MER41A LTR ERV1 1 554 0 872 205 111 156 chr15 36698084 36698286 -48997468 - LTR8A LTR ERV1 -516 211 1 230 75 100 25 chr15 36698618 36698655 -48997099 + LTR29 LTR ERV1 1 40 -582 1837 164 22 11 chr15 36698655 36699015 -48996739 + LTR8A LTR ERV1 1 364 -363 1679 145 11 4 chr15 36699220 36699482 -48996272 + LTR29 LTR ERV1 359 622 0 3459 150 44 68 chr15 36699520 36700226 -48995528 + LTR8 LTR ERV1 2 690 -1 2139 128 0 3 chr15 36700370 36700660 -48995094 + AluSx SINE Alu 1 289 -23 22 0 0 0 chr15 36700701 36700723 -48995031 + AT_rich Low_complexity Low_complexity 1 22 0 977 168 174 90 chr15 36700821 36701018 -48994736 + LTR48 LTR ERV1 1 237 -550 1521 207 3 17 chr15 36701018 36701317 -48994437 + AluJo SINE Alu 1 295 -17 977 168 174 90 chr15 36701317 36701441 -48994313 + LTR48 LTR ERV1 237 349 -438 2536 97 39 3 chr15 36701449 36701922 -48993832 + L1PB1 LINE L1 5151 5641 -510 204 40 0 0 chr15 36701923 36701948 -48993806 + (TG)n Simple_repeat Simple_repeat 2 26 0 2003 154 0 0 chr15 36701971 36702264 -48993490 + AluSx SINE Alu 16 308 -4 2357 102 0 0 chr15 36702264 36702588 -48993166 + L1PB1 LINE L1 5828 6151 0 180 0 0 0 chr15 36702591 36702611 -48993143 + (CAATA)n Simple_repeat Simple_repeat 4 23 0 746 234 27 32 chr15 36702701 36703029 -48992725 + LTR48 LTR ERV1 384 787 0 255 299 26 0 chr15 36703714 36703791 -48991963 - L2 LINE L2 -209 3063 2985 961 94 123 14 chr15 36704068 36704206 -48991548 - AluSp SINE Alu -160 153 1 1889 138 10 16 chr15 36704932 36705236 -48990518 - AluSx SINE Alu -6 306 5 2299 108 10 3 chr15 36706153 36706458 -48989296 - AluSc SINE Alu -2 307 1 435 253 108 32 chr15 36706664 36706822 -48988932 + MARNA DNA Mariner 9 178 -408 215 280 61 38 chr15 36707193 36707325 -48988429 + L2 LINE L2 3164 3298 -15 1321 170 65 29 chr15 36707328 36707604 -48988150 + AluSx SINE Alu 1 286 -26 627 141 0 0 chr15 36707639 36707731 -48988023 + FLAM_C SINE Alu 33 124 -19 213 121 0 0 chr15 36707972 36708005 -48987749 + (A)n Simple_repeat Simple_repeat 1 33 0 2409 81 10 0 chr15 36708038 36708335 -48987419 + AluSg1 SINE Alu 1 300 -9 1107 115 0 0 chr15 36708640 36708796 -48986958 + AluSg/x SINE Alu 153 308 -2 1777 137 100 0 chr15 36709010 36709280 -48986474 - AluSx SINE Alu -15 297 1 998 192 16 26 chr15 36709285 36709478 -48986276 - MER20 DNA MER1_type -25 194 4 991 211 26 34 chr15 36709617 36709913 -48985841 - LTR37B LTR ERV1 0 468 146 325 172 76 140 chr15 36709998 36710035 -48985719 - LTR37B LTR ERV1 -316 152 114 1102 180 47 9 chr15 36710035 36710246 -48985508 + MER20 DNA MER1_type 1 219 0 325 172 76 140 chr15 36710246 36710271 -48985483 - LTR37B LTR ERV1 -354 114 89 2260 115 3 0 chr15 36710271 36710576 -48985178 + AluSx SINE Alu 1 306 -6 1864 129 14 4 chr15 36710585 36710863 -48984891 + AluSg SINE Alu 21 301 -9 325 172 76 140 chr15 36710863 36710946 -48984808 - LTR37B LTR ERV1 -387 81 6 1335 127 0 227 chr15 36711044 36711431 -48984323 - AluSx SINE Alu -9 303 5 542 114 136 0 chr15 36712106 36712194 -48983560 + LTR48B LTR ERV1 28 127 -517 492 133 22 44 chr15 36712209 36712389 -48983365 + (TA)n Simple_repeat Simple_repeat 1 176 0 225 0 0 0 chr15 36712409 36712434 -48983320 + (TAGA)n Simple_repeat Simple_repeat 3 27 0 4527 191 96 66 chr15 36712598 36712700 -48983054 + LTR49-int LTR ERV1 3864 3962 -2369 1669 194 0 13 chr15 36712700 36713004 -48982750 - AluJo SINE Alu -12 300 1 4527 191 96 66 chr15 36713004 36714094 -48981660 + LTR49-int LTR ERV1 3962 5109 -1222 1901 163 0 3 chr15 36714094 36714383 -48981371 - AluJo SINE Alu -24 288 1 4527 191 96 66 chr15 36714383 36714649 -48981105 + LTR49-int LTR ERV1 5109 5366 -965 2209 116 0 7 chr15 36714649 36714952 -48980802 - AluSx SINE Alu -9 303 3 279 346 19 0 chr15 36715008 36715115 -48980639 + L1P4 LINE L1 5360 5468 -693 22 35 0 0 chr15 36715312 36715341 -48980413 + AT_rich Low_complexity Low_complexity 1 29 0 3422 250 87 35 chr15 36715502 36715775 -48979979 - L2 LINE L2 -508 2806 2549 1683 161 0 8 chr15 36715775 36716035 -48979719 - AluJb SINE Alu -54 258 1 3422 250 87 35 chr15 36716035 36717070 -48978684 - L2 LINE L2 -765 2549 1426 1613 193 11 0 chr15 36717070 36717340 -48978414 - AluJo SINE Alu -39 273 1 1634 200 51 102 chr15 36717351 36717881 -48977873 - L1ME3A LINE L1 -4 6166 5664 9630 114 73 105 chr15 36717883 36718487 -48977267 - Tigger1 DNA MER2_type 0 2418 1796 2058 147 0 0 chr15 36718487 36718787 -48976967 - AluSx SINE Alu -12 300 1 9630 114 73 105 chr15 36718787 36718910 -48976844 - Tigger1 DNA MER2_type -622 1796 1671 2091 138 13 0 chr15 36718910 36719214 -48976540 - AluSx SINE Alu -4 308 1 9630 114 73 105 chr15 36719214 36719413 -48976341 - Tigger1 DNA MER2_type -747 1671 1467 2016 129 14 0 chr15 36719413 36719692 -48976062 - AluSx SINE Alu -29 283 1 2159 134 0 0 chr15 36719701 36719999 -48975755 - AluSx SINE Alu -14 298 1 9630 114 73 105 chr15 36719999 36721059 -48974695 - Tigger1 DNA MER2_type -959 1459 484 1800 167 0 29 chr15 36721059 36721370 -48974384 - AluJb SINE Alu -10 302 1 414 124 0 3 chr15 36721371 36721442 -48974312 - L1ME3A LINE L1 -516 5667 5600 462 167 0 0 chr15 36721442 36721526 -48974228 + (CA)n Simple_repeat Simple_repeat 1 84 0 1756 156 7 17 chr15 36721536 36721825 -48973929 - AluJo SINE Alu -24 288 3 885 173 35 15 chr15 36721826 36722023 -48973731 - L1M3 LINE L1 -567 5616 5416 767 263 199 18 chr15 36721998 36722721 -48973033 - L1MEc LINE L1 -4819 1577 724 * 954 296 82 32 chr15 36722892 36723358 -48972396 - L1MEc LINE L1 -5873 523 35 2216 102 3 3 chr15 36724141 36724435 -48971319 + AluSx SINE Alu 1 294 -18 664 150 50 33 chr15 36724970 36725090 -48970664 - FLAM_C SINE Alu -11 132 11 2270 68 20 7 chr15 36726357 36726649 -48969105 - AluY SINE Alu -14 297 2 2145 130 0 0 chr15 36726651 36726943 -48968811 - AluSx SINE Alu -20 292 1 611 160 149 29 chr15 36727350 36727525 -48968229 - MER3 DNA MER1_type 0 209 14 640 173 0 0 chr15 36727970 36728074 -48967680 + FLAM_C SINE Alu 7 110 -33 21 0 0 0 chr15 36728074 36728095 -48967659 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr15 36728437 36728459 -48967295 + AT_rich Low_complexity Low_complexity 1 22 0 2186 111 7 0 chr15 36729660 36729958 -48965796 - AluSx SINE Alu -12 300 1 2051 123 4 0 chr15 36729990 36730266 -48965488 - AluSx SINE Alu -30 282 6 773 140 18 0 chr15 36730292 36730406 -48965348 - FLAM_C SINE Alu -25 118 3 2117 133 3 3 chr15 36730480 36730789 -48964965 - AluSx SINE Alu -3 309 1 2137 125 0 3 chr15 36730791 36731087 -48964667 - AluSx SINE Alu -17 295 1 2134 131 0 0 chr15 36731962 36732252 -48963502 + AluSg SINE Alu 1 290 -20 252 241 194 29 chr15 36734897 36735067 -48960687 - MIR SINE MIR -9 253 56 261 146 0 0 chr15 36735236 36735284 -48960470 + (A)n Simple_repeat Simple_repeat 1 48 0 1871 149 0 17 chr15 36736526 36736827 -48958927 - AluJb SINE Alu -16 296 1 968 233 296 25 chr15 36736829 36737400 -48958354 - LTR50 LTR ERVL -52 743 18 4291 92 9 5 chr15 36737564 36738116 -48957638 + MER41A LTR ERV1 1 554 0 1622 118 100 33 chr15 36738406 36738677 -48957077 - AluJo SINE Alu -23 289 1 1433 176 124 0 chr15 36738683 36738833 -48956921 - AluJo SINE Alu -2 300 170 432 51 0 0 chr15 36738833 36738892 -48956862 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 1433 176 124 0 chr15 36738892 36739008 -48956746 - AluJo SINE Alu -132 170 1 435 340 45 32 chr15 36739132 36739379 -48956375 + MIR SINE MIR 12 261 -1 266 174 49 14 chr15 36741085 36741230 -48954524 + GA-rich Low_complexity Low_complexity 1 150 0 264 314 93 86 chr15 36741732 36742012 -48953742 - L2 LINE L2 -25 3247 2966 312 302 311 25 chr15 36742119 36742814 -48952940 - L2 LINE L2 -557 2757 1864 22 0 0 0 chr15 36742870 36742892 -48952862 + AT_rich Low_complexity Low_complexity 1 22 0 2034 119 14 3 chr15 36743016 36743311 -48952443 + AluSx SINE Alu 1 298 -14 2034 147 3 0 chr15 36743324 36743617 -48952137 - AluSx SINE Alu -18 294 1 672 99 40 0 chr15 36743635 36743736 -48952018 - L1PB1 LINE L1 -119 6032 5928 188 65 0 32 chr15 36744244 36744275 -48951479 + (TA)n Simple_repeat Simple_repeat 1 30 0 226 213 16 16 chr15 36744302 36744363 -48951391 + (TA)n Simple_repeat Simple_repeat 1 61 0 1549 190 0 21 chr15 36744364 36744653 -48951101 - AluJb SINE Alu -24 288 6 1977 145 31 0 chr15 36744840 36745129 -48950625 - AluSx SINE Alu -14 298 1 2384 86 20 3 chr15 36745386 36745690 -48950064 + AluSg SINE Alu 1 309 -1 2536 64 0 0 chr15 36745912 36746223 -48949531 + AluY SINE Alu 1 311 0 22 0 0 0 chr15 36746937 36746959 -48948795 + AT_rich Low_complexity Low_complexity 1 22 0 258 247 185 0 chr15 36746966 36747047 -48948707 + L2 LINE L2 3178 3273 -40 210 227 160 13 chr15 36747045 36747120 -48948634 + L2 LINE L2 3180 3265 -7 * 2322 105 3 0 chr15 36748430 36748736 -48947018 - AluSp SINE Alu -6 307 1 1564 177 25 11 chr15 36748952 36749234 -48946520 - AluJo SINE Alu -18 294 9 22 35 0 0 chr15 36749586 36749615 -48946139 + AT_rich Low_complexity Low_complexity 1 29 0 214 369 62 0 chr15 36749980 36750110 -48945644 - L2 LINE L2 -16 3297 3160 196 275 0 0 chr15 36750507 36750547 -48945207 - L2 LINE L2 -7 3265 3226 2810 280 95 17 chr15 36750640 36751914 -48943840 + L2 LINE L2 1923 3308 -5 3503 245 161 29 chr15 36751980 36752051 -48943703 + L2 LINE L2 1396 1456 -1857 1032 141 212 20 chr15 36752051 36752249 -48943505 - MER46A DNA MER2_type 0 236 1 3503 245 161 29 chr15 36752249 36753871 -48941883 + L2 LINE L2 1456 3312 -1 2171 87 23 3 chr15 36755136 36755436 -48940318 + AluSq SINE Alu 1 306 -7 2153 96 17 17 chr15 36755826 36756128 -48939626 + AluSx SINE Alu 1 302 -10 258 246 115 31 chr15 36756269 36756399 -48939355 - Charlie8 DNA MER1_type -2142 275 135 846 146 0 8 chr15 36756400 36756530 -48939224 + FLAM_C SINE Alu 1 129 -14 1487 81 70 4 chr15 36756548 36756806 -48938948 + AluY SINE Alu 1 275 -36 2157 119 7 0 chr15 36757025 36757327 -48938427 - AluSx SINE Alu -8 304 1 2075 96 15 0 chr15 36757519 36757790 -48937964 + AluSx SINE Alu 31 305 -7 1627 166 24 10 chr15 36757798 36758093 -48937661 + AluJb SINE Alu 1 299 -13 34 0 0 0 chr15 36758193 36758227 -48937527 + AT_rich Low_complexity Low_complexity 1 34 0 2023 141 3 3 chr15 36758278 36758583 -48937171 - AluSx SINE Alu -7 305 1 180 152 0 0 chr15 36758678 36758711 -48937043 + (TA)n Simple_repeat Simple_repeat 1 33 0 330 244 106 8 chr15 36759140 36759263 -48936491 - MIR SINE MIR 0 262 128 994 164 12 0 chr15 36759463 36759628 -48936126 - AluSg/x SINE Alu -16 294 128 315 191 0 0 chr15 36759628 36759696 -48936058 + CT-rich Low_complexity Low_complexity 2 69 0 639 133 168 0 chr15 36759697 36759810 -48935944 - FLAM_C SINE Alu 0 133 2 509 218 309 0 chr15 36759899 36760142 -48935612 + MER5C DNA MER1_type 7 324 0 1928 119 33 3 chr15 36760260 36760563 -48935191 - AluSx SINE Alu 0 312 1 181 125 21 21 chr15 36760967 36761015 -48934739 + (CCG)n Simple_repeat Simple_repeat 3 50 0 1808 102 0 74 chr15 36762739 36763024 -48932730 + AluSx SINE Alu 36 299 -13 2213 101 3 10 chr15 36763333 36763640 -48932114 - AluSx SINE Alu -7 305 1 728 202 8 0 chr15 36763987 36764106 -48931648 - FLAM_C SINE Alu -22 121 2 2163 121 0 3 chr15 36764844 36765157 -48930597 - AluSx SINE Alu 0 312 1 262 211 19 0 chr15 36765465 36765517 -48930237 - L2 LINE L2 -30 3242 3190 2189 83 0 7 chr15 36766564 36766840 -48928914 - AluSx SINE Alu -38 274 1 2329 91 0 0 chr15 36768035 36768322 -48927432 - AluSg SINE Alu -17 293 7 201 98 24 24 chr15 36768512 36768553 -48927201 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1869 136 20 7 chr15 36768628 36768923 -48926831 + AluSx SINE Alu 1 299 -13 906 155 87 19 chr15 36769492 36769653 -48926101 + AluJo SINE Alu 17 188 -124 1599 150 87 8 chr15 36769672 36769938 -48925816 + AluJo SINE Alu 1 287 -25 1338 147 18 85 chr15 36773881 36774153 -48921601 + AluJb SINE Alu 1 254 -58 21 0 0 0 chr15 36774187 36774208 -48921546 + AT_rich Low_complexity Low_complexity 1 21 0 230 241 0 51 chr15 36774251 36774330 -48921424 - L1ME2 LINE L1 -19 6145 6071 1037 188 19 0 chr15 36774600 36774807 -48920947 - L1ME2 LINE L1 -289 5875 5665 1998 109 14 4 chr15 36774821 36775117 -48920637 - AluSg SINE Alu 0 299 1 2434 82 0 3 chr15 36775173 36775478 -48920276 - AluSg SINE Alu -6 304 1 2149 130 0 9 chr15 36776325 36776640 -48919114 - AluSx SINE Alu 0 312 1 1410 177 34 37 chr15 36776728 36777022 -48918732 + AluJo SINE Alu 6 298 -14 2178 86 21 10 chr15 36777033 36777323 -48918431 + AluSg SINE Alu 2 294 -16 1419 209 12 0 chr15 36777901 36778160 -48917594 + AluJb SINE Alu 28 289 -23 1397 186 0 0 chr15 36778357 36778593 -48917161 - AluJb SINE Alu -22 290 55 505 222 157 27 chr15 36778788 36778973 -48916781 - L1MC5 LINE L1 -48 7913 7705 2473 58 10 10 chr15 36779339 36779647 -48916107 - AluSp SINE Alu -5 308 1 30 0 0 0 chr15 36779670 36779700 -48916054 + AT_rich Low_complexity Low_complexity 1 30 0 1951 162 0 3 chr15 36779980 36780289 -48915465 - AluJb SINE Alu -2 310 3 23 0 0 0 chr15 36781185 36781208 -48914546 + AT_rich Low_complexity Low_complexity 1 23 0 969 154 0 0 chr15 36781208 36781364 -48914390 - L1MA5 LINE L1 -1 6299 6144 23 0 0 0 chr15 36781935 36781958 -48913796 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr15 36783719 36783747 -48912007 + AT_rich Low_complexity Low_complexity 1 28 0 2211 110 0 0 chr15 36783761 36784053 -48911701 - AluSq SINE Alu -21 292 1 29 28 0 0 chr15 36784465 36784501 -48911253 + AT_rich Low_complexity Low_complexity 1 36 0 1939 155 10 0 chr15 36784810 36785107 -48910647 - AluJb SINE Alu -12 300 1 2201 106 0 0 chr15 36785169 36785453 -48910301 - AluSg SINE Alu -26 284 1 2448 76 0 0 chr15 36785756 36786057 -48909697 + AluY SINE Alu 1 301 -10 2167 95 17 0 chr15 36789086 36789381 -48906373 - AluSg SINE Alu -10 300 1 1787 147 35 3 chr15 36890573 36890859 -48804895 + AluJb SINE Alu 1 295 -17 2110 119 0 0 chr15 36891431 36891725 -48804029 + AluSx SINE Alu 1 294 -18 1127 138 62 97 chr15 36892298 36892426 -48803328 + AluJo SINE Alu 11 142 -170 1997 129 6 26 chr15 36892426 36892737 -48803017 - AluSx SINE Alu -7 305 1 1127 138 62 97 chr15 36892737 36892898 -48802856 + AluJo SINE Alu 142 290 -22 1931 107 13 10 chr15 36893323 36893622 -48802132 + AluSg SINE Alu 1 300 -10 26 0 0 0 chr15 36893688 36893714 -48802040 + AT_rich Low_complexity Low_complexity 1 26 0 269 197 14 0 chr15 36893947 36894018 -48801736 + CT-rich Low_complexity Low_complexity 1 72 0 307 212 121 30 chr15 36894018 36894117 -48801637 - MIR SINE MIR -34 228 121 2193 104 0 10 chr15 36895832 36896141 -48799613 + AluSc SINE Alu 1 306 -3 454 245 180 29 chr15 36896152 36896430 -48799324 + L1MC4a LINE L1 5607 5926 -1882 2279 81 3 7 chr15 36896981 36897289 -48798465 + AluSc SINE Alu 1 307 -2 1393 212 55 41 chr15 36897572 36897935 -48797819 - MLT1B LTR MaLR 0 390 23 1843 129 0 42 chr15 36898310 36898620 -48797134 + AluSx SINE Alu 1 297 -15 24 0 0 0 chr15 36898620 36898644 -48797110 + AT_rich Low_complexity Low_complexity 1 24 0 261 0 0 0 chr15 36899488 36899517 -48796237 + (A)n Simple_repeat Simple_repeat 1 29 0 1996 121 3 13 chr15 36899519 36899655 -48796099 + AluSq SINE Alu 1 137 -176 2221 97 0 0 chr15 36899655 36899955 -48795799 + AluSx SINE Alu 1 300 -12 1996 121 3 13 chr15 36899955 36900116 -48795638 + AluSq SINE Alu 137 295 -18 33 0 0 0 chr15 36900133 36900166 -48795588 + AT_rich Low_complexity Low_complexity 1 33 0 1087 149 0 6 chr15 36900228 36900403 -48795351 + FRAM SINE Alu 1 170 -6 261 353 52 7 chr15 36900451 36900587 -48795167 - MIR SINE MIR -19 243 102 1834 207 56 11 chr15 36901542 36901986 -48793768 + MLT1C LTR MaLR 1 464 -3 447 118 13 53 chr15 36902439 36902515 -48793239 - Charlie3 DNA MER1_type -4 2706 2634 341 281 23 39 chr15 36903096 36903224 -48792530 - MIR SINE MIR -20 242 117 395 257 28 18 chr15 36903633 36903742 -48792012 + MER94 DNA DNA 1 110 -24 274 325 49 8 chr15 36903822 36903945 -48791809 + MIR SINE MIR 65 192 -70 584 196 5 111 chr15 36904579 36904651 -48791103 + MER104 DNA Tc2 3 81 -1817 2073 109 10 0 chr15 36904651 36904945 -48790809 + AluSq SINE Alu 3 299 -14 584 196 5 111 chr15 36904945 36905061 -48790693 + MER104 DNA Tc2 81 171 -9 21 0 0 0 chr15 36905133 36905154 -48790600 + AT_rich Low_complexity Low_complexity 1 21 0 1977 128 0 0 chr15 36905572 36905861 -48789893 - AluSx SINE Alu -2 310 22 992 171 12 0 chr15 36906058 36906222 -48789532 + FRAM SINE Alu 1 166 0 1616 152 4 11 chr15 36906804 36907080 -48788674 + AluJo SINE Alu 1 274 -38 396 189 0 133 chr15 36907276 36907301 -48788453 + L1MB5 LINE L1 6051 6078 -96 2210 107 3 0 chr15 36907301 36907611 -48788143 + AluY SINE Alu 1 311 0 396 189 0 133 chr15 36907611 36907663 -48788091 + L1MB5 LINE L1 6078 6103 -71 1737 172 0 3 chr15 36907663 36907971 -48787783 - AluJo SINE Alu -5 307 1 396 189 0 133 chr15 36907971 36908035 -48787719 + L1MB5 LINE L1 6103 6174 0 488 16 16 0 chr15 36908145 36908206 -48787548 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 726 87 0 0 chr15 36908266 36908369 -48787385 + (TAGA)n Simple_repeat Simple_repeat 1 103 0 451 245 199 7 chr15 36908848 36908999 -48786755 + MER5A DNA MER1_type 10 189 0 2631 16 7 3 chr15 36909057 36909367 -48786387 + AluY SINE Alu 1 311 0 754 228 71 47 chr15 36909997 36910420 -48785334 - LTR48B LTR ERV1 0 644 123 471 240 0 0 chr15 36910407 36910503 -48785251 - MER34 LTR ERV1 -446 96 1 * 2296 75 0 3 chr15 36910530 36910824 -48784930 - AluYa5 SINE Alu -18 293 1 2197 104 0 3 chr15 36910826 36911125 -48784629 - AluSg SINE Alu -11 299 2 1189 220 124 23 chr15 36911132 36911484 -48784270 + MLT1D LTR MaLR 123 505 0 489 248 33 0 chr15 36911591 36911712 -48784042 - LTR67 LTR ERVL -52 505 381 229 254 30 0 chr15 36911744 36911811 -48783943 - L1MC4 LINE L1 -2 8040 7972 749 347 37 13 chr15 36911814 36912197 -48783557 - LTR16C LTR ERVL -3 488 97 804 255 51 0 chr15 36912464 36912680 -48783074 + Charlie2 DNA MER1_type 2623 2849 -13 273 29 0 0 chr15 36913091 36913125 -48782629 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2044 117 0 37 chr15 36913133 36913457 -48782297 + AluSx SINE Alu 1 312 0 2160 65 0 7 chr15 36913632 36913909 -48781845 - L1PA5 LINE L1 -64 6090 5816 519 296 59 12 chr15 36914486 36914655 -48781099 + MIR SINE MIR 7 183 -79 2005 110 6 25 chr15 36915390 36915708 -48780046 + AluSx SINE Alu 1 312 0 350 25 0 0 chr15 36916496 36916536 -48779218 + (T)n Simple_repeat Simple_repeat 1 40 0 294 245 189 0 chr15 36918191 36918297 -48777457 - MLT1J LTR MaLR -73 438 313 462 250 25 17 chr15 36918387 36918507 -48777247 - MLT1J LTR MaLR -358 153 33 1923 153 0 3 chr15 36918716 36919024 -48776730 + AluSx SINE Alu 1 307 -5 738 277 13 43 chr15 36919084 36919319 -48776435 + MER90 LTR ERV1 1 228 -386 220 264 94 66 chr15 36919849 36919928 -48775826 + MIR SINE MIR 60 144 -118 2117 128 0 0 chr15 36919928 36920241 -48775513 + AluSq SINE Alu 1 313 0 220 264 94 66 chr15 36920241 36920267 -48775487 + MIR SINE MIR 144 168 -94 1760 91 4 4 chr15 36920771 36921013 -48774741 - AluSq SINE Alu -71 242 1 364 270 103 38 chr15 36921195 36921335 -48774419 + MIR3 SINE MIR 33 181 -27 318 281 62 16 chr15 36921378 36921625 -48774129 - MARNA DNA Mariner -16 570 261 2114 104 3 3 chr15 36921675 36921973 -48773781 - AluSq SINE Alu -15 298 1 658 235 78 0 chr15 36921984 36922163 -48773591 - AluJo SINE Alu 0 312 120 225 0 0 0 chr15 36922692 36922717 -48773037 + (A)n Simple_repeat Simple_repeat 1 25 0 326 210 108 68 chr15 36923514 36923533 -48772221 + Charlie8 DNA MER1_type 89 106 -224 2246 93 3 0 chr15 36923533 36923835 -48771919 + AluSq SINE Alu 1 303 -10 326 210 108 68 chr15 36923835 36923965 -48771789 + Charlie8 DNA MER1_type 106 223 -107 880 79 40 8 chr15 36924029 36924155 -48771599 + AluSg SINE Alu 1 130 -180 1946 109 0 7 chr15 36924159 36924452 -48771302 + AluSg SINE Alu 1 291 -19 189 74 0 0 chr15 36925578 36925605 -48770149 + (CA)n Simple_repeat Simple_repeat 2 28 0 195 42 0 0 chr15 36925652 36925676 -48770078 + (TTC)n Simple_repeat Simple_repeat 2 25 0 873 103 0 24 chr15 36925680 36925806 -48769948 - FLAM_C SINE Alu -20 123 1 1323 111 13 60 chr15 36926210 36926445 -48769309 - AluJo SINE Alu -15 297 74 2295 70 0 3 chr15 36926454 36926753 -48769001 - AluY SINE Alu -13 298 1 466 164 0 0 chr15 36926756 36926829 -48768925 - AluJo SINE Alu -219 93 21 2424 44 3 3 chr15 36926954 36927252 -48768502 - AluY SINE Alu -13 298 1 22 70 0 0 chr15 36927363 36927406 -48768348 + AT_rich Low_complexity Low_complexity 1 43 0 1000 311 38 5 chr15 36927627 36928000 -48767754 + Tigger8 DNA MER2_type 14 398 -268 273 295 53 84 chr15 36928000 36928190 -48767564 - MIR SINE MIR 0 262 79 448 367 32 8 chr15 36928190 36928438 -48767316 + Tigger8 DNA MER2_type 404 657 -9 224 288 182 0 chr15 36928480 36928546 -48767208 + L2 LINE L2 3196 3273 -40 1552 137 88 11 chr15 36928679 36928963 -48766791 + AluJo SINE Alu 3 308 -4 1982 151 0 0 chr15 36929787 36930098 -48765656 + AluSx SINE Alu 1 311 -1 2045 128 0 0 chr15 36930107 36930403 -48765351 + AluSx SINE Alu 1 296 -16 746 243 14 0 chr15 36930499 36930697 -48765057 + FRAM SINE Alu 1 197 0 1489 169 39 26 chr15 36931008 36931316 -48764438 + AluJb SINE Alu 1 312 0 1990 113 0 3 chr15 36931830 36932138 -48763616 - AluSx SINE Alu 0 307 1 317 295 154 40 chr15 36932421 36932648 -48763106 + MIR SINE MIR 9 261 -1 2031 131 0 0 chr15 36932745 36933043 -48762711 - AluSx SINE Alu -14 298 1 2028 112 0 16 chr15 36933046 36933359 -48762395 - AluSq SINE Alu 0 313 6 1666 173 14 0 chr15 36933611 36933906 -48761848 - AluJo SINE Alu -13 299 1 934 307 117 5 chr15 36933908 36934403 -48761351 + L2 LINE L2 2669 3225 -88 1927 136 0 0 chr15 36934508 36934802 -48760952 + AluSx SINE Alu 1 294 -18 422 322 27 14 chr15 36935425 36935571 -48760183 - MIR SINE MIR -62 200 53 1049 240 50 0 chr15 36935646 36935904 -48759850 - L1ME1 LINE L1 -5 6161 5891 23 78 0 0 chr15 36936035 36936086 -48759668 + AT_rich Low_complexity Low_complexity 1 51 0 2389 77 0 3 chr15 36936432 36936744 -48759010 - AluY SINE Alu 0 311 1 888 142 8 0 chr15 36937562 36937696 -48758058 + AluSq/x SINE Alu 1 135 -178 1986 123 0 10 chr15 36937696 36938005 -48757749 + AluSg SINE Alu 1 306 -4 711 109 27 9 chr15 36938054 36938164 -48757590 + HY1 scRNA scRNA 1 112 0 35 0 0 0 chr15 36938164 36938199 -48757555 + AT_rich Low_complexity Low_complexity 1 35 0 215 274 177 18 chr15 36938856 36938969 -48756785 - MIR SINE MIR 0 262 132 1937 136 20 0 chr15 36939169 36939471 -48756283 + AluSq SINE Alu 1 308 -5 294 165 32 17 chr15 36939494 36939567 -48756187 - MIR SINE MIR -78 130 49 1862 134 6 54 chr15 36939885 36940199 -48755555 - AluSx SINE Alu -13 299 1 615 144 0 0 chr15 36940784 36940874 -48754880 + AluJ/FLAM SINE Alu 2 91 -221 281 274 0 78 chr15 36941519 36941621 -48754133 + MIR SINE MIR 30 123 -85 1363 192 59 39 chr15 36941804 36941920 -48753834 + AluJo SINE Alu 1 113 -199 394 88 29 0 chr15 36941920 36941988 -48753766 + (TA)n Simple_repeat Simple_repeat 2 71 0 1363 192 59 39 chr15 36941988 36942157 -48753597 + AluJo SINE Alu 113 292 -20 875 154 0 0 chr15 36942159 36942289 -48753465 + FLAM_C SINE Alu 1 130 -3 392 218 89 8 chr15 36942637 36942761 -48752993 + L1MC5 LINE L1 7723 7856 -105 582 228 130 91 chr15 36943590 36943998 -48751756 + MLT1H LTR MaLR 119 542 -7 36 0 0 21 chr15 36944475 36944501 -48751253 + AT_rich Low_complexity Low_complexity 1 27 -19 2276 112 0 0 chr15 36944501 36944797 -48750957 - AluSx SINE Alu -16 296 1 36 0 0 21 chr15 36944797 36944817 -48750937 + AT_rich Low_complexity Low_complexity 27 46 0 2464 72 0 7 chr15 36945633 36945937 -48749817 - AluY SINE Alu -9 302 1 248 297 178 0 chr15 36946224 36946337 -48749417 + MIR SINE MIR 21 152 -65 2109 100 3 10 chr15 36946448 36946738 -48749016 - AluSx SINE Alu -24 288 1 208 191 0 64 chr15 36947584 36947631 -48748123 + L2 LINE L2 3136 3179 -93 1600 189 48 3 chr15 36947755 36948068 -48747686 - L1MB7 LINE L1 -21 6163 5837 2052 132 7 10 chr15 36948190 36948500 -48747254 - AluSx SINE Alu -3 309 1 269 167 0 17 chr15 36948877 36948937 -48746817 + A-rich Low_complexity Low_complexity 2 60 0 23 33 0 0 chr15 36950233 36950263 -48745491 + GC_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr15 36953217 36953244 -48742510 + AT_rich Low_complexity Low_complexity 1 27 0 404 260 40 110 chr15 36954473 36954673 -48741081 - MIR SINE MIR -27 235 50 584 134 168 17 chr15 36955035 36955154 -48740600 + FLAM_C SINE Alu 2 138 -5 1691 133 4 65 chr15 36956346 36956625 -48739129 + AluSx SINE Alu 33 294 -18 416 174 0 0 chr15 36956749 36956818 -48738936 - AluJ/FLAM SINE Alu -242 70 2 848 127 40 0 chr15 36956818 36956968 -48738786 - L1MA7 LINE L1 -47 6244 6089 844 254 42 5 chr15 36956986 36957199 -48738555 + MER58A DNA MER1_type 4 224 0 2123 94 24 17 chr15 36957224 36957512 -48738242 - AluSc SINE Alu -18 291 2 417 245 91 7 chr15 36957708 36957851 -48737903 + MIR SINE MIR 34 188 -74 189 0 0 0 chr15 36958347 36958368 -48737386 + (A)n Simple_repeat Simple_repeat 1 21 0 196 250 145 0 chr15 36959603 36959679 -48736075 + MIR SINE MIR 33 120 -88 2511 79 0 3 chr15 36959764 36960069 -48735685 + AluSc SINE Alu 1 304 -5 2416 83 3 13 chr15 36960128 36960442 -48735312 + AluY SINE Alu 1 311 0 1286 184 38 52 chr15 36961104 36961392 -48734362 - AluJb SINE Alu -6 306 23 2336 85 16 0 chr15 36962152 36962457 -48733297 + AluSg SINE Alu 1 310 0 1250 107 112 13 chr15 36962497 36962730 -48733024 - L1MA2 LINE L1 0 6304 6049 610 141 33 0 chr15 36962735 36962827 -48732927 - U6 snRNA snRNA -11 96 2 4985 129 32 36 chr15 36962829 36963921 -48731833 - L1MA3 LINE L1 -224 7500 6401 15388 110 35 7 chr15 36963921 36966227 -48729527 - L1MA3 LINE L1 -3896 3669 1299 667 193 0 22 chr15 36966795 36966930 -48728824 - AluJo SINE Alu -91 221 90 253 269 102 85 chr15 36967980 36968055 -48727699 + L1M4 LINE L1 4367 4439 -1707 1815 150 44 10 chr15 36968055 36968349 -48727405 + AluJb SINE Alu 1 304 -8 253 269 102 85 chr15 36968349 36968484 -48727270 + L1M4 LINE L1 4439 4570 -1576 1947 165 9 15 chr15 36968484 36968823 -48726931 + MER1B DNA MER1_type 1 337 0 253 269 102 85 chr15 36968823 36969284 -48726470 + L1M4 LINE L1 4570 5051 -1095 273 342 98 22 chr15 36970645 36971186 -48724568 - L2 LINE L2 -426 2888 2307 993 288 52 76 chr15 36971836 36972105 -48723649 + MLT1J LTR MaLR 1 275 -236 2258 123 0 3 chr15 36972105 36972415 -48723339 - AluSg SINE Alu -1 309 1 993 288 52 76 chr15 36972415 36972515 -48723239 + MLT1J LTR MaLR 275 376 -135 2155 145 3 0 chr15 36972515 36972826 -48722928 - AluSx SINE Alu 0 312 1 993 288 52 76 chr15 36972826 36972979 -48722775 + MLT1J LTR MaLR 376 511 0 715 119 0 18 chr15 36973944 36974053 -48721701 - AluSq/x SINE Alu -205 108 2 252 314 39 20 chr15 36974137 36974239 -48721515 + L2 LINE L2 3203 3306 -7 804 162 7 27 chr15 36974365 36974596 -48721158 + AluJb SINE Alu 167 394 0 369 224 0 0 chr15 36975142 36975209 -48720545 + AluJ/FLAM SINE Alu 1 67 -235 1159 176 19 9 chr15 36975596 36975806 -48719948 + AluJo SINE Alu 1 212 -100 2326 98 3 0 chr15 36976080 36976375 -48719379 - AluSx SINE Alu -16 296 1 2478 62 0 10 chr15 36978337 36978643 -48717111 - AluY SINE Alu -8 303 1 368 250 106 0 chr15 36978768 36978872 -48716882 - L2 LINE L2 0 3313 3199 223 352 94 28 chr15 36978934 36979147 -48716607 - L2 LINE L2 -523 2791 2565 383 205 238 8 chr15 36979804 36979926 -48715828 - MER5A DNA MER1_type -21 168 19 384 293 83 8 chr15 36979975 36980108 -48715646 + MIR SINE MIR 27 169 -93 1327 130 0 29 chr15 36980624 36980831 -48714923 + AluJo SINE Alu 112 312 0 2327 112 3 3 chr15 36980919 36981232 -48714522 + AluSp SINE Alu 1 313 0 21 0 0 0 chr15 36982675 36982696 -48713058 + AT_rich Low_complexity Low_complexity 1 21 0 1966 148 0 10 chr15 36983164 36983462 -48712292 - AluJb SINE Alu -16 296 2 1220 189 121 18 chr15 36984034 36984314 -48711440 - AluJb SINE Alu -3 309 1 1343 86 0 11 chr15 36984336 36984511 -48711243 - AluSq SINE Alu -1 312 140 753 187 0 0 chr15 36984611 36984745 -48711009 + AluSg/x SINE Alu 175 308 -2 451 287 0 0 chr15 36985285 36985414 -48710340 + MIR SINE MIR 123 251 -11 180 200 0 0 chr15 36985424 36985464 -48710290 + (CACCAT)n Simple_repeat Simple_repeat 4 43 0 536 306 25 10 chr15 36985464 36985663 -48710091 + MIR SINE MIR 58 259 -3 2360 89 10 0 chr15 36986142 36986446 -48709308 + AluSg SINE Alu 1 307 -3 303 28 0 0 chr15 36987074 36987110 -48708644 + (TG)n Simple_repeat Simple_repeat 1 36 0 189 74 0 0 chr15 36987588 36987615 -48708139 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2016 95 0 8 chr15 36987632 36987894 -48707860 - AluSq SINE Alu -53 260 1 1731 267 40 25 chr15 36988365 36988840 -48706914 + MER115 DNA AcHobo 181 662 -31 2220 124 0 7 chr15 36989172 36989479 -48706275 + AluSx SINE Alu 1 305 -7 523 118 18 73 chr15 36989528 36989638 -48706116 - U13 snRNA snRNA 0 104 1 789 138 0 0 chr15 36990292 36990408 -48705346 + FLAM_C SINE Alu 1 116 -17 2164 121 3 13 chr15 36990421 36990734 -48705020 - AluSx SINE Alu 0 312 3 330 87 0 0 chr15 36990876 36990922 -48704832 + (TG)n Simple_repeat Simple_repeat 2 47 0 2086 137 0 3 chr15 36991339 36991638 -48704116 + AluJo SINE Alu 1 298 -14 738 164 8 16 chr15 36991648 36991776 -48703978 + FLAM_A SINE Alu 1 127 -6 1628 99 132 12 chr15 36992147 36992390 -48703364 - AluSg SINE Alu -38 272 1 3333 140 29 24 chr15 36992429 36992980 -48702774 + MER41C LTR ERV1 1 554 0 1004 135 6 35 chr15 36993002 36993172 -48702582 - AluJo/FRAM SINE Alu -1 301 137 331 209 0 51 chr15 36993172 36993250 -48702504 - AluS SINE Alu -241 61 1 977 257 54 96 chr15 36993499 36993622 -48702132 - L1MC4a LINE L1 -1800 6008 5881 2261 107 3 0 chr15 36993622 36993920 -48701834 - AluSq SINE Alu -14 299 1 977 257 54 96 chr15 36993920 36994024 -48701730 - L1MC4a LINE L1 -1927 5881 5774 2057 131 10 0 chr15 36994024 36994315 -48701439 - AluSx SINE Alu -18 294 1 977 257 54 96 chr15 36994315 36994627 -48701127 - L1MC4a LINE L1 -2034 5774 5491 1986 146 0 13 chr15 36994684 36994999 -48700755 + AluJo SINE Alu 1 311 -1 22 0 0 0 chr15 36995743 36995765 -48699989 + AT_rich Low_complexity Low_complexity 1 22 0 2317 104 0 3 chr15 36996154 36996453 -48699301 - AluSx SINE Alu -14 298 1 3150 68 22 0 chr15 36996990 36997399 -48698355 + L1PA7 LINE L1 5737 6154 0 1889 159 7 3 chr15 36997611 36997913 -48697841 - AluSq SINE Alu -10 303 1 1129 82 13 0 chr15 36999537 36999696 -48696058 - L1MA3 LINE L1 -11 6294 6134 1524 194 48 10 chr15 36999696 36999985 -48695769 - AluJo SINE Alu -8 304 5 1760 158 7 14 chr15 37000474 37000771 -48694983 + AluJo SINE Alu 15 309 -3 852 102 0 95 chr15 37001139 37001286 -48694468 + FLAM_C SINE Alu 1 133 0 327 198 19 85 chr15 37001770 37001876 -48693878 + MIR SINE MIR 85 183 -79 1014 154 130 67 chr15 37002781 37002932 -48692822 - MER58A DNA MER1_type -2199 221 52 1658 201 0 3 chr15 37002932 37003241 -48692513 + AluJo SINE Alu 1 308 -4 1014 154 130 67 chr15 37003241 37003297 -48692457 - MER58A DNA MER1_type -2368 52 1 349 241 90 15 chr15 37004623 37004756 -48690998 + MIR SINE MIR 60 202 -60 329 212 253 10 chr15 37004771 37004870 -48690884 + L2 LINE L2 3186 3308 -5 339 227 146 9 chr15 37005015 37005125 -48690629 + MIR SINE MIR 48 172 -90 348 284 36 62 chr15 37006138 37006363 -48689391 + L2 LINE L2 2461 2679 -635 1518 180 64 24 chr15 37006387 37006682 -48689072 + AluJo SINE Alu 1 307 -5 2090 103 3 21 chr15 37007475 37007766 -48687988 - AluSc SINE Alu -23 286 1 2233 110 0 7 chr15 37008669 37008978 -48686776 + AluSc SINE Alu 1 307 -2 2209 106 3 13 chr15 37010329 37010632 -48685122 - AluY SINE Alu -11 300 1 2402 77 0 26 chr15 37010813 37011124 -48684630 - AluY SINE Alu -8 303 1 417 229 28 0 chr15 37011129 37011238 -48684516 - MER104 DNA Tc2 -40 140 29 849 67 75 0 chr15 37011677 37011797 -48683957 - L1PA16 LINE L1 -15 6151 6023 1966 142 3 16 chr15 37011797 37012113 -48683641 - AluSx SINE Alu 0 312 1 795 152 213 0 chr15 37012115 37012279 -48683475 - AluJb SINE Alu -7 305 107 5194 171 12 25 chr15 37012279 37014073 -48681681 - L1PA16 LINE L1 -130 6036 4271 2048 146 7 0 chr15 37014073 37014382 -48681372 - AluSp SINE Alu -2 311 1 5194 171 12 25 chr15 37014382 37014529 -48681225 - L1PA16 LINE L1 -1895 4271 4124 26 0 0 0 chr15 37014581 37014607 -48681147 + AT_rich Low_complexity Low_complexity 1 26 0 2190 133 0 0 chr15 37014673 37014975 -48680779 - AluSx SINE Alu -10 302 1 834 216 88 5 chr15 37015111 37015315 -48680439 + MIR SINE MIR 35 255 -7 585 223 50 59 chr15 37015986 37016188 -48679566 + MIR SINE MIR 28 227 -35 434 312 39 13 chr15 37016724 37016878 -48678876 + L2 LINE L2 3115 3272 0 21 0 0 0 chr15 37018188 37018209 -48677545 + AT_rich Low_complexity Low_complexity 1 21 0 526 221 63 0 chr15 37018285 37018436 -48677318 - MIR SINE MIR -48 214 55 1274 60 18 0 chr15 37018442 37018608 -48677146 - L1PA10 LINE L1 0 6168 6000 787 216 74 61 chr15 37018907 37019138 -48676616 + Charlie8 DNA MER1_type 1 234 -2183 1089 218 14 0 chr15 37019172 37019388 -48676366 - MER20 DNA MER1_type 0 219 1 186 205 84 60 chr15 37019767 37019850 -48675904 - MIR SINE MIR -129 133 49 596 144 0 64 chr15 37020840 37020965 -48674789 - MER5A DNA MER1_type 0 189 73 1390 121 103 9 chr15 37020966 37021080 -48674674 - AluY SINE Alu -57 254 152 228 35 0 0 chr15 37021080 37021109 -48674645 + (TTA)n Simple_repeat Simple_repeat 1 29 0 1390 121 103 9 chr15 37021109 37021226 -48674528 - AluY SINE Alu -159 152 1 381 181 0 0 chr15 37021227 37021299 -48674455 - MER5A DNA MER1_type -114 75 4 747 140 52 15 chr15 37021321 37021457 -48674297 + FRAM SINE Alu 19 159 -17 1662 159 67 85 chr15 37021896 37022298 -48673456 - MSTD LTR MaLR 0 396 2 1642 125 42 0 chr15 37022461 37022701 -48673053 + MER1B DNA MER1_type 1 250 -89 898 170 0 0 chr15 37022830 37022977 -48672777 - AluSg/x SINE Alu 0 312 166 1163 172 5 15 chr15 37022977 37023175 -48672579 - AluJb SINE Alu -32 280 85 2051 136 27 0 chr15 37025230 37025531 -48670223 + AluSx SINE Alu 2 310 -2 291 93 0 0 chr15 37026055 37026098 -48669656 + (TG)n Simple_repeat Simple_repeat 1 43 0 201 147 0 0 chr15 37026933 37026967 -48668787 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 1215 236 149 8 chr15 37028194 37028522 -48667232 + L1MC4 LINE L1 7240 7521 -521 1629 168 4 7 chr15 37028522 37028796 -48666958 + AluJb SINE Alu 16 288 -24 1215 236 149 8 chr15 37028796 37028812 -48666942 + L1MC4 LINE L1 7521 7533 -509 1896 126 23 40 chr15 37028812 37029113 -48666641 + AluSx SINE Alu 1 296 -16 1215 236 149 8 chr15 37029113 37029237 -48666517 + L1MC4 LINE L1 7533 7775 -267 2408 69 0 41 chr15 37029237 37029556 -48666198 + AluY SINE Alu 1 306 -5 234 351 166 7 chr15 37031246 37031542 -48664212 - L2 LINE L2 -5 3267 2925 2041 157 3 0 chr15 37032322 37032628 -48663126 - AluJb SINE Alu -5 307 1 1918 94 0 0 chr15 37032819 37033063 -48662691 - AluSx SINE Alu -6 306 63 382 257 10 0 chr15 37033063 37033164 -48662590 + MIR SINE MIR 147 248 -14 240 184 0 0 chr15 37034653 37034702 -48661052 + T-rich Low_complexity Low_complexity 1 49 0 1098 90 0 0 chr15 37034702 37034835 -48660919 - AluSq/x SINE Alu -179 133 1 29 0 0 0 chr15 37034859 37034888 -48660866 + AT_rich Low_complexity Low_complexity 1 29 0 324 316 36 22 chr15 37036248 37036387 -48659367 + MIR SINE MIR 111 251 -11 459 287 72 11 chr15 37036855 37037036 -48658718 + Charlie7 DNA MER1_type 2 193 -2419 532 233 40 74 chr15 37037182 37037384 -48658370 + MIR3 SINE MIR 7 201 -7 2088 142 0 3 chr15 37037912 37038215 -48657539 + AluJo SINE Alu 1 302 -10 2940 188 83 5 chr15 37038215 37038805 -48656949 - MER6 DNA MER2_type -228 637 2 289 71 143 0 chr15 37040525 37040567 -48655187 + MADE1 DNA Mariner 31 78 -2 28 102 0 0 chr15 37040632 37040730 -48655024 + AT_rich Low_complexity Low_complexity 1 98 0 1681 114 67 37 chr15 37040740 37041038 -48654716 + AluSx SINE Alu 1 307 -5 444 250 67 0 chr15 37041038 37041142 -48654612 - AluJo/FLAM SINE Alu -196 116 6 1710 148 0 75 chr15 37041614 37041945 -48653809 + AluJo SINE Alu 1 306 -6 244 320 186 35 chr15 37042355 37042527 -48653227 + MIR SINE MIR 64 261 -1 666 186 290 0 chr15 37042578 37042761 -48652993 + MIR SINE MIR 2 237 -25 348 241 11 35 chr15 37042795 37042882 -48652872 - L2 LINE L2 -1 3271 3187 218 286 71 0 chr15 37043384 37043468 -48652286 + CT-rich Low_complexity Low_complexity 4 93 0 1868 216 69 30 chr15 37093470 37093961 -48601793 - L1MC4 LINE L1 -753 7289 6780 252 0 0 0 chr15 37094232 37094260 -48601494 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 923 185 0 0 chr15 37094263 37094414 -48601340 - FRAM SINE Alu -30 146 1 214 216 34 23 chr15 37094414 37094445 -48601309 + T-rich Low_complexity Low_complexity 3 32 -59 1901 138 3 46 chr15 37094445 37094771 -48600983 - AluSx SINE Alu 0 312 1 214 216 34 23 chr15 37094771 37094827 -48600927 + T-rich Low_complexity Low_complexity 32 91 0 413 179 217 9 chr15 37094831 37094937 -48600817 - FLAM_C SINE Alu -6 137 10 312 354 61 6 chr15 37095885 37096049 -48599705 - MER5B DNA MER1_type -5 173 1 522 251 97 11 chr15 37096917 37097092 -48598662 - MIR SINE MIR -14 248 59 254 378 26 7 chr15 37098214 37098365 -48597389 + MIR SINE MIR 35 188 -74 187 266 9 83 chr15 37098930 37099039 -48596715 + L2 LINE L2 2439 2539 -775 22 35 0 0 chr15 37099046 37099075 -48596679 + AT_rich Low_complexity Low_complexity 1 29 0 2175 93 47 17 chr15 37099664 37099964 -48595790 - AluSx SINE Alu -3 309 1 1341 182 0 0 chr15 37100554 37100774 -48594980 + AluJb SINE Alu 81 300 -12 229 307 13 13 chr15 37100954 37101029 -48594725 + MIR SINE MIR 20 94 -168 28 17 0 69 chr15 37101276 37101334 -48594420 + AT_rich Low_complexity Low_complexity 1 54 0 2241 101 7 0 chr15 37101589 37101875 -48593879 - AluSq SINE Alu -24 289 2 2158 125 3 0 chr15 37101929 37102217 -48593537 + AluSx SINE Alu 1 289 -23 253 262 93 33 chr15 37103694 37103877 -48591877 - L1ME4a LINE L1 -194 5927 5734 213 65 0 0 chr15 37104019 37104050 -48591704 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 495 33 0 0 chr15 37104366 37104427 -48591327 + (TG)n Simple_repeat Simple_repeat 2 62 0 2258 64 0 14 chr15 37104432 37104713 -48591041 - AluSx SINE Alu -10 302 26 1926 271 51 19 chr15 37104736 37105422 -48590332 + L1MC4a LINE L1 5257 5964 -1844 1923 157 0 10 chr15 37105955 37106260 -48589494 - AluJb SINE Alu -10 302 1 657 66 0 0 chr15 37106494 37106585 -48589169 + (TCCA)n Simple_repeat Simple_repeat 3 93 0 939 166 70 9 chr15 37106720 37106949 -48588805 - Charlie5 DNA MER1_type 0 2624 2382 2588 63 0 0 chr15 37107112 37107414 -48588340 - AluSc SINE Alu -7 302 1 207 100 0 0 chr15 37107518 37107548 -48588206 + (TGGA)n Simple_repeat Simple_repeat 4 33 0 476 219 185 0 chr15 37108365 37108516 -48587238 + MER5A DNA MER1_type 9 187 -2 324 111 0 0 chr15 37110528 37110582 -48585172 + (CA)n Simple_repeat Simple_repeat 2 55 0 22 70 0 0 chr15 37110838 37110881 -48584873 + AT_rich Low_complexity Low_complexity 1 43 0 472 234 90 24 chr15 37111404 37111571 -48584183 - MER5B DNA MER1_type 0 178 1 40 49 0 0 chr15 37112246 37112307 -48583447 + AT_rich Low_complexity Low_complexity 1 61 0 1923 106 53 3 chr15 37112313 37112597 -48583157 - AluSx SINE Alu -14 298 1 2082 150 0 0 chr15 37113962 37114269 -48581485 - AluJb SINE Alu -5 307 1 204 135 0 27 chr15 37114418 37114455 -48581299 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 2559 71 0 0 chr15 37114848 37115157 -48580597 + AluY SINE Alu 1 309 -2 1589 104 5 14 chr15 37119484 37119696 -48576058 + AluSx SINE Alu 1 210 -102 279 130 29 14 chr15 37119735 37119804 -48575950 + (TA)n Simple_repeat Simple_repeat 1 70 0 543 207 9 0 chr15 37119869 37119985 -48575769 - FLAM_C SINE Alu -26 117 1 403 257 82 55 chr15 37119986 37120169 -48575585 - L1MC/D LINE L1 -1989 5819 5632 2212 129 0 0 chr15 37120317 37120626 -48575128 - AluSx SINE Alu -3 309 1 1033 132 7 0 chr15 37120818 37121029 -48574725 - ALR/Alpha Satellite centromeric 0 212 1 2142 130 0 7 chr15 37122966 37123274 -48572480 + AluJb SINE Alu 1 306 -6 2265 229 111 0 chr15 37123547 37124044 -48571710 - MLT1F1 LTR MaLR -13 554 3 330 26 0 0 chr15 37124069 37124108 -48571646 + (TG)n Simple_repeat Simple_repeat 2 40 0 195 42 0 0 chr15 37124126 37124150 -48571604 + (CA)n Simple_repeat Simple_repeat 2 25 0 261 0 0 0 chr15 37124170 37124199 -48571555 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 209 119 24 0 chr15 37124223 37124265 -48571489 + (TA)n Simple_repeat Simple_repeat 2 44 0 600 268 23 35 chr15 37124344 37124584 -48571170 - MIR SINE MIR 0 262 21 325 278 24 24 chr15 37124832 37124958 -48570796 - MIR3 SINE MIR -53 155 30 374 318 117 31 chr15 37125310 37125533 -48570221 + MIR SINE MIR 10 251 -11 1722 164 25 7 chr15 37127033 37127319 -48568435 + AluJo SINE Alu 1 291 -21 2344 84 0 0 chr15 37127323 37127657 -48568097 + AluSx SINE Alu 1 334 0 954 221 74 135 chr15 37127709 37128006 -48567748 - MLT1C LTR MaLR -9 458 201 928 160 0 0 chr15 37128006 37128150 -48567604 + U4 snRNA snRNA 1 144 -1 954 221 74 135 chr15 37128150 37128340 -48567414 - MLT1C LTR MaLR -266 201 1 202 324 7 81 chr15 37128507 37128643 -48567111 + L2 LINE L2 2566 2691 -623 * 519 311 5 24 chr15 37128630 37128836 -48566918 - L2 LINE L2 -429 2885 2684 915 265 36 23 chr15 37128963 37129269 -48566485 - L2 LINE L2 -995 2319 2010 2289 108 0 0 chr15 37129340 37129637 -48566117 - AluSg SINE Alu -13 297 1 1963 114 0 109 chr15 37130389 37130739 -48565015 + AluJb SINE Alu 1 312 0 967 182 6 11 chr15 37134750 37134926 -48560828 + FAM SINE Alu 1 175 0 22 0 0 0 chr15 37135987 37136009 -48559745 + AT_rich Low_complexity Low_complexity 1 22 0 230 331 118 8 chr15 37136237 37136364 -48559390 - L2 LINE L2 0 3313 3173 2311 92 14 0 chr15 37136403 37136696 -48559058 + AluSc SINE Alu 1 297 -12 598 197 0 73 chr15 37136801 37136938 -48558816 + MER20 DNA MER1_type 93 219 0 1826 166 0 13 chr15 37137031 37137333 -48558421 + AluJb SINE Alu 1 298 -14 2464 80 3 0 chr15 37138373 37138675 -48557079 + AluSp SINE Alu 1 303 -10 1591 162 56 7 chr15 37138683 37138967 -48556787 + AluJb SINE Alu 1 298 -14 22 0 0 0 chr15 37139050 37139072 -48556682 + AT_rich Low_complexity Low_complexity 1 22 0 371 228 44 132 chr15 37139107 37139357 -48556397 + MIR SINE MIR 13 240 -22 762 178 31 0 chr15 37139441 37139570 -48556184 - FLAM_C SINE Alu 0 133 1 22 35 0 0 chr15 37140369 37140398 -48555356 + AT_rich Low_complexity Low_complexity 1 29 0 27 62 0 0 chr15 37140445 37140493 -48555261 + AT_rich Low_complexity Low_complexity 1 48 0 841 124 108 0 chr15 37140549 37140678 -48555076 - MER46A DNA MER2_type -90 146 4 870 151 91 82 chr15 37140551 37140694 -48555060 + MER46A DNA MER2_type 1 148 -2583 1855 111 50 4 chr15 37140694 37140973 -48554781 + AluSx SINE Alu 1 292 -20 870 151 91 82 chr15 37140973 37141061 -48554693 + MER46A DNA MER2_type 148 234 -2 1881 128 6 28 chr15 37141230 37141549 -48554205 - AluSx SINE Alu 0 312 1 381 322 66 0 chr15 37141592 37141713 -48554041 - MIR3 SINE MIR -39 169 41 1576 188 3 17 chr15 37141917 37142215 -48553539 + AluJb SINE Alu 1 294 -18 651 296 20 20 chr15 37142391 37142594 -48553160 + MIR SINE MIR 2 204 -58 2279 95 0 0 chr15 37142789 37143095 -48552659 + AluSx SINE Alu 1 306 -6 1920 129 7 3 chr15 37145892 37146186 -48549568 - AluSg SINE Alu -15 295 1 579 340 128 11 chr15 37146222 37146604 -48549150 - L3 LINE CR1 -57 1520 1094 466 188 0 0 chr15 37146676 37146756 -48548998 + FRAM SINE Alu 62 141 -35 884 204 16 0 chr15 37146807 37146993 -48548761 - MER5A DNA MER1_type 0 189 1 245 289 198 0 chr15 37147010 37147131 -48548623 + MIR3 SINE MIR 45 189 -19 267 241 0 0 chr15 37147197 37147255 -48548499 + (CA)n Simple_repeat Simple_repeat 1 58 0 375 73 0 0 chr15 37148706 37148761 -48546993 + (TC)n Simple_repeat Simple_repeat 2 56 0 942 83 0 0 chr15 37148785 37148906 -48546848 - AluSg SINE Alu -189 121 1 253 171 255 25 chr15 37149364 37149493 -48546261 - MIR SINE MIR -40 168 8 1576 133 4 11 chr15 37150246 37150509 -48545245 + AluSx SINE Alu 45 305 -7 403 167 0 0 chr15 37150513 37150585 -48545169 + Alu SINE Alu 240 311 -1 373 167 0 0 chr15 37150598 37150658 -48545096 + Alu SINE Alu 239 298 -3 257 164 0 18 chr15 37150659 37150714 -48545040 + GA-rich Low_complexity Low_complexity 1 54 0 1586 185 14 3 chr15 37150721 37151008 -48544746 + AluJb SINE Alu 2 291 -21 206 0 69 0 chr15 37151347 37151376 -48544378 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2155 101 0 0 chr15 37151378 37151665 -48544089 - AluSx SINE Alu -25 287 1 4217 173 51 15 chr15 37151984 37152859 -48542895 - L1MB8 LINE L1 0 6178 5272 1260 192 72 7 chr15 37153314 37153590 -48542164 - AluJo SINE Alu -13 299 6 1030 198 10 10 chr15 37154114 37154311 -48541443 - MER20 DNA MER1_type -1 218 22 801 172 0 21 chr15 37154339 37154484 -48541270 - FLAM_C SINE Alu 0 143 2 2112 110 3 0 chr15 37154512 37154803 -48540951 + AluSx SINE Alu 1 292 -20 6517 116 11 47 chr15 37154803 37155418 -48540336 + L1MA2 LINE L1 5162 5798 -506 1794 167 0 13 chr15 37155418 37155717 -48540037 + AluSx SINE Alu 1 295 -17 6517 116 11 47 chr15 37155717 37155772 -48539982 + L1MA2 LINE L1 5798 5853 -451 1947 134 7 0 chr15 37155772 37156062 -48539692 + AluSx SINE Alu 1 292 -20 6517 116 11 47 chr15 37156062 37156559 -48539195 + L1MA2 LINE L1 5853 6293 -11 639 184 0 71 chr15 37156581 37156722 -48539032 + FLAM_C SINE Alu 3 133 0 2327 109 28 0 chr15 37156924 37157245 -48538509 + MER1B DNA MER1_type 1 330 -9 2080 120 0 3 chr15 37157565 37157873 -48537881 + AluSq SINE Alu 1 307 -6 229 286 52 0 chr15 37159100 37159177 -48536577 - L2 LINE L2 -292 2980 2900 481 267 119 17 chr15 37160401 37160577 -48535177 + MIR SINE MIR 50 243 -19 697 330 86 23 chr15 37160592 37161070 -48534684 - L2 LINE L2 -16 3297 2791 200 293 42 89 chr15 37161151 37161342 -48534412 - L2 LINE L2 -1332 1982 1801 206 323 92 73 chr15 37161754 37162057 -48533697 + L2 LINE L2 2990 3298 -15 1688 169 16 13 chr15 37163328 37163635 -48532119 + AluJo SINE Alu 1 308 -4 2121 68 4 7 chr15 37163727 37164007 -48531747 + AluY SINE Alu 3 281 -30 180 0 0 0 chr15 37164011 37164031 -48531723 + (CAA)n Simple_repeat Simple_repeat 2 21 0 269 339 51 17 chr15 37164959 37165077 -48530677 + MIR SINE MIR 121 242 -20 658 237 109 63 chr15 37166433 37166893 -48528861 - L1ME4a LINE L1 -28 6093 5613 232 206 44 15 chr15 37167483 37167551 -48528203 - MER116 DNA Mariner -10 70 1 2285 80 0 0 chr15 37167720 37168009 -48527745 - AluSx SINE Alu -23 289 1 1839 125 7 4 chr15 37169891 37170203 -48525551 - AluSx SINE Alu 0 313 1 311 168 40 48 chr15 37171020 37171145 -48524609 + L1MC5 LINE L1 7613 7736 -225 1588 165 0 4 chr15 37171159 37171419 -48524335 + AluJo SINE Alu 1 259 -53 1806 147 7 0 chr15 37171523 37171816 -48523938 - AluJb SINE Alu -17 295 1 2144 111 0 7 chr15 37172102 37172408 -48523346 + AluSx SINE Alu 1 304 -8 363 258 75 0 chr15 37173338 37173458 -48522296 + L1ME4a LINE L1 5991 6119 -2 1364 227 7 28 chr15 37174940 37175231 -48520523 - MLT1A1 LTR MaLR -42 323 39 2137 112 3 6 chr15 37177406 37177718 -48518036 - AluSx SINE Alu -1 311 1 800 217 13 44 chr15 37177813 37178039 -48517715 + AluJo SINE Alu 79 297 -15 206 229 42 0 chr15 37178039 37178087 -48517667 + MIR SINE MIR 99 148 -114 1731 144 0 63 chr15 37179360 37179693 -48516061 + AluJb SINE Alu 1 312 0 417 39 0 0 chr15 37179696 37179747 -48516007 + (CA)n Simple_repeat Simple_repeat 1 51 0 1959 97 36 4 chr15 37179944 37180223 -48515531 + AluSp SINE Alu 1 288 -25 296 233 60 60 chr15 37180586 37180719 -48515035 - LTR33 LTR ERVL -345 176 44 791 211 270 12 chr15 37182192 37182676 -48513078 - Tigger7 DNA MER2_type 0 2487 8 1584 178 17 10 chr15 37182841 37183139 -48512615 - AluJo SINE Alu -12 300 1 1276 158 95 55 chr15 37183451 37183595 -48512159 + AluJo SINE Alu 1 138 -174 1991 130 0 0 chr15 37183595 37183914 -48511840 + AluSx SINE Alu 1 319 0 1276 158 95 55 chr15 37183914 37184041 -48511713 + AluJo SINE Alu 138 284 -28 832 220 0 0 chr15 37184042 37184192 -48511562 + AluSg/x SINE Alu 131 280 -30 255 329 0 0 chr15 37184534 37184607 -48511147 + MIR3 SINE MIR 88 160 -48 1117 210 81 35 chr15 37184616 37184926 -48510828 - MER5C DNA MER1_type 0 324 1 271 293 60 15 chr15 37185282 37185415 -48510339 - MIR3 SINE MIR -19 189 51 182 204 0 61 chr15 37185960 37186009 -48509745 - L2 LINE L2 -4 3268 3223 349 93 19 0 chr15 37186033 37186087 -48509667 + L1MA9 LINE L1 6250 6304 -8 228 196 43 0 chr15 37186154 37186200 -48509554 - MIR SINE MIR -122 140 93 504 315 92 56 chr15 37186972 37187277 -48508477 + L3 LINE CR1 1177 1492 -85 274 376 47 20 chr15 37187319 37187468 -48508286 + MIR SINE MIR 81 233 -29 210 195 24 0 chr15 37187548 37187589 -48508165 + MIR3 SINE MIR 145 186 -22 2076 99 10 14 chr15 37187843 37187999 -48507755 - AluSx SINE Alu -20 292 136 1955 101 21 3 chr15 37187999 37188162 -48507592 - AluSc SINE Alu -17 292 120 243 0 0 0 chr15 37188162 37188189 -48507565 + (TG)n Simple_repeat Simple_repeat 2 28 0 1955 101 21 3 chr15 37188189 37188312 -48507442 - AluSc SINE Alu -189 120 1 2076 99 10 14 chr15 37188312 37188448 -48507306 - AluSx SINE Alu -176 136 1 1946 114 0 17 chr15 37188636 37188934 -48506820 - AluSc SINE Alu -16 293 1 348 83 0 0 chr15 37189014 37189062 -48506692 + (TG)n Simple_repeat Simple_repeat 2 49 0 879 164 146 0 chr15 37189161 37189326 -48506428 - MER5A DNA MER1_type 0 189 1 2559 77 0 0 chr15 37190717 37191028 -48504726 + AluY SINE Alu 1 311 0 296 248 8 112 chr15 37191852 37191977 -48503777 + MIR SINE MIR 81 192 -70 2138 109 26 26 chr15 37192443 37192755 -48502999 - AluSx SINE Alu 0 312 1 193 129 71 0 chr15 37193308 37193378 -48502376 + (TA)n Simple_repeat Simple_repeat 1 75 0 1832 154 7 0 chr15 37193458 37193761 -48501993 + AluSx SINE Alu 1 305 0 775 238 6 0 chr15 37193898 37194058 -48501696 + FRAM SINE Alu 9 169 -7 1738 203 78 5 chr15 37194148 37194381 -48501373 + MER63B DNA MER1_type 3 278 -784 1715 78 9 22 chr15 37194381 37194613 -48501141 + AluSx SINE Alu 1 229 -83 1738 203 78 5 chr15 37194613 37194778 -48500976 + MER63B DNA MER1_type 278 430 -6 2389 91 3 0 chr15 37194928 37195225 -48500529 + AluSp SINE Alu 1 298 -15 916 127 0 0 chr15 37195478 37195604 -48500150 + AluJo/FLAM SINE Alu 3 128 -174 2321 100 0 0 chr15 37195604 37195903 -48499851 + AluSx SINE Alu 1 299 -13 224 294 0 15 chr15 37196379 37196447 -48499307 + MIR SINE MIR 161 227 -35 492 169 0 0 chr15 37197030 37197113 -48498641 - MER49 LTR ERV1 -659 264 182 661 200 12 55 chr15 37197115 37197280 -48498474 - L1M4 LINE L1 -1966 4180 4023 1889 128 22 95 chr15 37197828 37197951 -48497803 - MER2 DNA MER2_type 0 344 214 2395 63 0 23 chr15 37197951 37198252 -48497502 - AluY SINE Alu -17 294 1 2263 116 3 0 chr15 37198252 37198554 -48497200 - AluSx SINE Alu -9 303 1 1889 128 22 95 chr15 37198554 37198797 -48496957 - MER2 DNA MER2_type -128 216 4 619 180 81 75 chr15 37199866 37199978 -48495776 + MER20 DNA MER1_type 54 169 -50 195 42 0 0 chr15 37199978 37200002 -48495752 + (CA)n Simple_repeat Simple_repeat 1 24 0 619 180 81 75 chr15 37200002 37200050 -48495704 + MER20 DNA MER1_type 169 215 -4 377 277 26 45 chr15 37200973 37201128 -48494626 + L1ME3A LINE L1 5699 5850 -320 317 344 65 45 chr15 37202040 37202348 -48493406 - MLT1K LTR MaLR -172 416 103 1964 140 17 90 chr15 37203724 37204145 -48491609 + MLT1B LTR MaLR 1 390 0 586 167 0 0 chr15 37205569 37205659 -48490095 - AluJ/FLAM SINE Alu -221 91 2 288 244 109 25 chr15 37205869 37205988 -48489766 - MLT1J LTR MaLR -269 242 114 1630 183 32 0 chr15 37206686 37206965 -48488789 - AluJo SINE Alu -20 292 5 279 312 109 22 chr15 37207223 37207361 -48488393 - MIR SINE MIR -3 259 110 1699 138 7 27 chr15 37208273 37208674 -48487080 - L1P3 LINE L1 -5830 631 67 32274 97 12 31 chr15 37208674 37214516 -48481238 + L1PA7 LINE L1 430 6153 -1 1865 179 13 0 chr15 37217232 37217540 -48478214 + AluJo SINE Alu 1 312 0 2113 78 92 0 chr15 37217543 37217824 -48477930 + AluSx SINE Alu 1 307 -5 1631 164 7 46 chr15 37217935 37218104 -48477650 - AluJo SINE Alu -19 293 140 2360 122 0 0 chr15 37218104 37218416 -48477338 - AluSx SINE Alu 0 312 1 1631 164 7 46 chr15 37218416 37218551 -48477203 - AluJo SINE Alu -172 140 1 472 327 57 8 chr15 37218744 37218992 -48476762 - L1MC4 LINE L1 -2 8040 7781 1201 269 118 12 chr15 37219022 37219590 -48476164 - L1MC4 LINE L1 -478 7564 6937 654 151 28 0 chr15 37219614 37219720 -48476034 - FRAM SINE Alu -68 108 1 1062 268 104 46 chr15 37219720 37220058 -48475696 - L1MC4 LINE L1 -944 6949 6632 1774 159 7 7 chr15 37220058 37220348 -48475406 + AluJo SINE Alu 1 290 -22 1062 268 104 46 chr15 37220348 37220584 -48475170 - L1MC4 LINE L1 -1261 6632 6411 1512 140 4 4 chr15 37220584 37220812 -48474942 - AluJo SINE Alu -8 304 77 1062 268 104 46 chr15 37220812 37221147 -48474607 - L1MC4 LINE L1 -1482 6411 5879 2287 206 105 18 chr15 37221147 37221357 -48474397 + REP3 LTR ERV 3 193 -369 1909 147 23 3 chr15 37221357 37221657 -48474097 - AluSx SINE Alu -6 306 1 2287 206 105 18 chr15 37221657 37221961 -48473793 + REP3 LTR ERV 193 562 0 1062 268 104 46 chr15 37221961 37222045 -48473709 - L1MC4 LINE L1 -2014 5879 5801 550 206 0 53 chr15 37222115 37222246 -48473508 - FLAM_A SINE Alu -6 127 4 1836 167 10 10 chr15 37222296 37222595 -48473159 + AluJb SINE Alu 1 299 -13 237 267 95 0 chr15 37223540 37223645 -48472109 - MIR SINE MIR -17 245 131 1900 164 0 13 chr15 37224037 37224341 -48471413 + AluJb SINE Alu 5 304 -8 233 291 13 0 chr15 37224744 37224823 -48470931 - MIR3 SINE MIR -17 191 112 494 281 79 14 chr15 37225794 37226048 -48469706 + L2 LINE L2 2723 3057 -215 1693 138 90 14 chr15 37226063 37226352 -48469402 + AluSx SINE Alu 1 311 -1 382 288 27 38 chr15 37226507 37226691 -48469063 + L2 LINE L2 3113 3294 -19 26 50 0 0 chr15 37226923 37226963 -48468791 + AT_rich Low_complexity Low_complexity 1 40 0 2474 65 0 0 chr15 37227020 37227312 -48468442 - AluY SINE Alu -19 292 1 22 56 0 0 chr15 37227376 37227412 -48468342 + AT_rich Low_complexity Low_complexity 1 36 0 2327 96 0 7 chr15 37227420 37227713 -48468041 + AluSg SINE Alu 1 291 -19 1902 173 13 0 chr15 37227913 37228220 -48467534 + AluJo SINE Alu 1 311 -1 656 164 0 0 chr15 37228736 37228840 -48466914 + FLAM_C SINE Alu 6 109 -34 183 256 77 13 chr15 37229082 37229160 -48466594 + L2 LINE L2 3138 3220 -52 2365 68 10 10 chr15 37230050 37230361 -48465393 - AluY SINE Alu 0 311 1 485 223 51 13 chr15 37230446 37230603 -48465151 - L1ME4a LINE L1 -177 5944 5782 1717 108 100 0 chr15 37230745 37230996 -48464758 + AluSx SINE Alu 7 282 -30 248 217 17 0 chr15 37231618 37231678 -48464076 + L2 LINE L2 2584 2644 -670 914 207 0 0 chr15 37232049 37232213 -48463541 - FRAM SINE Alu -13 163 1 307 273 0 26 chr15 37235477 37235554 -48460200 + L2 LINE L2 3192 3266 -6 5319 129 46 17 chr15 37235563 37235951 -48459803 + L1PB3 LINE L1 5081 5456 -698 1739 119 6 104 chr15 37235951 37236286 -48459468 + AluJo SINE Alu 1 302 -10 5319 129 46 17 chr15 37236286 37236937 -48458817 + L1PB3 LINE L1 5456 6151 -3 216 267 0 35 chr15 37237090 37237176 -48458578 + GA-rich Low_complexity Low_complexity 2 84 0 2268 116 0 0 chr15 37237223 37237524 -48458230 + AluSx SINE Alu 1 301 -11 1264 171 9 5 chr15 37237916 37238133 -48457621 - AluJo SINE Alu -10 302 85 1655 173 14 0 chr15 37238198 37238481 -48457273 - AluJo SINE Alu -7 305 19 1662 141 85 4 chr15 37238550 37238820 -48456934 - AluJb SINE Alu -20 292 1 1824 87 87 47 chr15 37238858 37239135 -48456619 + AluY SINE Alu 1 288 -23 180 0 0 0 chr15 37239350 37239370 -48456384 + (T)n Simple_repeat Simple_repeat 1 20 0 817 277 80 54 chr15 37239370 37239835 -48455919 + MLT1H LTR MaLR 73 549 0 1497 88 0 10 chr15 37240168 37240362 -48455392 + AluSq SINE Alu 60 251 -62 1617 244 20 10 chr15 37240436 37240829 -48454925 + MLT1F1 LTR MaLR 5 400 -167 189 0 0 0 chr15 37240863 37240884 -48454870 + (A)n Simple_repeat Simple_repeat 1 21 0 2199 121 16 0 chr15 37240888 37241195 -48454559 + AluSx SINE Alu 1 312 0 590 193 67 67 chr15 37241197 37241347 -48454407 + MLT1F1 LTR MaLR 386 535 -32 1907 112 45 25 chr15 37241402 37241688 -48454066 - AluSx SINE Alu -16 296 5 899 167 0 0 chr15 37241806 37241968 -48453786 + AluSg/x SINE Alu 144 305 0 2206 83 0 4 chr15 37242175 37242452 -48453302 - AluY SINE Alu -21 290 15 848 180 41 6 chr15 37246552 37246724 -48449030 + AluJb SINE Alu 135 312 0 1633 179 3 27 chr15 37247052 37247349 -48448405 - AluJo SINE Alu -20 292 3 180 0 0 0 chr15 37247605 37247625 -48448129 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1892 144 72 22 chr15 37248031 37248351 -48447403 + MER1B DNA MER1_type 2 337 0 264 304 9 26 chr15 37248453 37248568 -48447186 + L1MB7 LINE L1 5741 5853 -1955 725 110 0 0 chr15 37249187 37249287 -48446467 - AluJ/FLAM SINE Alu -212 100 1 2117 115 3 0 chr15 37249533 37249820 -48445934 + AluSx SINE Alu 1 288 -24 282 29 0 0 chr15 37249827 37249862 -48445892 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 2639 181 133 9 chr15 37250851 37251424 -48444330 - MER82 DNA MER2_type 0 653 10 1316 134 49 49 chr15 37252245 37252491 -48443263 + Tigger2a DNA MER2_type 1 246 -188 2251 116 0 0 chr15 37252808 37253111 -48442643 + AluSx SINE Alu 1 303 -9 2150 130 0 13 chr15 37253528 37253843 -48441911 + AluSx SINE Alu 1 311 -1 647 140 9 18 chr15 37253993 37254107 -48441647 + MLT1B LTR MaLR 1 113 -277 661 150 23 2 chr15 37254212 37254335 -48441419 - L1MB2 LINE L1 -209 5961 5830 216 0 0 0 chr15 37254352 37254376 -48441378 + (T)n Simple_repeat Simple_repeat 1 24 0 2325 93 20 0 chr15 37254727 37255029 -48440725 - AluSg SINE Alu -2 308 1 1301 128 0 0 chr15 37255042 37255230 -48440524 - AluSg/x SINE Alu 0 310 123 239 140 53 0 chr15 37255421 37255478 -48440276 + L1MB7 LINE L1 6125 6184 0 1075 235 6 35 chr15 37255578 37255889 -48439865 - L1MA10 LINE L1 -4 6330 6029 2326 84 0 16 chr15 37256162 37256473 -48439281 + AluY SINE Alu 2 307 -4 1883 139 24 10 chr15 37256483 37256771 -48438983 + AluSx SINE Alu 1 292 -20 225 337 117 10 chr15 37256981 37257186 -48438568 + L2 LINE L2 2154 2380 -934 2267 110 3 0 chr15 37257803 37258104 -48437650 + AluSx SINE Alu 1 302 -10 1673 194 31 18 chr15 37259362 37259743 -48436011 + L1MA6 LINE L1 5915 6300 0 37 39 0 0 chr15 37260213 37260264 -48435490 + AT_rich Low_complexity Low_complexity 1 51 0 2872 136 44 0 chr15 37260434 37260862 -48434892 - MER1A DNA MER1_type -82 447 1 1948 104 0 0 chr15 37261145 37261394 -48434360 + AluSc SINE Alu 44 292 -17 186 43 0 0 chr15 37261395 37261418 -48434336 + (TA)n Simple_repeat Simple_repeat 2 24 0 1436 185 76 0 chr15 37261433 37261709 -48434045 + AluSx SINE Alu 1 297 -15 1593 155 29 0 chr15 37262534 37262811 -48432943 + AluJb SINE Alu 14 298 -14 1537 179 155 18 chr15 37263209 37263479 -48432275 + L1MC3 LINE L1 6708 7046 -739 1918 148 0 10 chr15 37263479 37263783 -48431971 + AluSx SINE Alu 1 301 -11 1537 179 155 18 chr15 37263783 37263892 -48431862 + L1MC3 LINE L1 7046 7139 -646 580 165 0 0 chr15 37263957 37264048 -48431706 + AluJ/FLAM SINE Alu 1 91 -221 207 278 37 0 chr15 37264726 37264780 -48430974 + MIR3 SINE MIR 147 202 -6 188 247 68 41 chr15 37265353 37265426 -48430328 + L2 LINE L2 3224 3298 -15 849 179 42 47 chr15 37265613 37265803 -48429951 + MER20 DNA MER1_type 31 219 0 435 259 282 6 chr15 37265831 37266005 -48429749 + MIR SINE MIR 38 259 -3 541 211 114 0 chr15 37266009 37266123 -48429631 + L2 LINE L2 3187 3313 0 277 346 19 31 chr15 37266174 37266270 -48429484 - L2 LINE L2 -947 2367 2272 1810 163 48 0 chr15 37266270 37266564 -48429190 + AluJb SINE Alu 1 308 -4 277 346 19 31 chr15 37266564 37266626 -48429128 - L2 LINE L2 -1042 2272 2211 1415 160 56 35 chr15 37267516 37267827 -48427927 + AluJb SINE Alu 1 317 0 194 281 177 0 chr15 37267868 37267964 -48427790 + MIR SINE MIR 54 166 -96 773 250 6 0 chr15 37267968 37268132 -48427622 - AluJb SINE Alu -20 292 128 659 167 8 45 chr15 37268155 37268287 -48427467 - AluSq/x SINE Alu -181 132 6 24 32 0 0 chr15 37268291 37268322 -48427432 + AT_rich Low_complexity Low_complexity 1 31 0 507 247 0 0 chr15 37268442 37268535 -48427219 + FLAM_A SINE Alu 2 94 -48 399 254 84 14 chr15 37268932 37269074 -48426680 + L1M4 LINE L1 5015 5166 -980 1928 156 35 11 chr15 37269076 37269447 -48426307 - L1M3 LINE L1 -509 5671 5292 22 0 0 0 chr15 37269477 37269499 -48426255 + AT_rich Low_complexity Low_complexity 1 22 0 830 144 0 0 chr15 37269499 37269617 -48426137 - AluJb SINE Alu -194 118 1 783 180 16 36 chr15 37269625 37269819 -48425935 - L1M3 LINE L1 -858 5288 5099 27 29 0 0 chr15 37270334 37270368 -48425386 + AT_rich Low_complexity Low_complexity 1 34 0 493 336 106 0 chr15 37270650 37270867 -48424887 + MIR SINE MIR 23 262 0 1164 175 14 31 chr15 37271126 37271349 -48424405 - MER20 DNA MER1_type 0 219 1 2141 106 0 10 chr15 37274172 37274465 -48421289 + AluSg SINE Alu 1 290 -20 291 262 148 54 chr15 37275537 37275686 -48420068 - MER5B DNA MER1_type -9 169 7 600 237 0 30 chr15 37275699 37275834 -48419920 + FLAM_A SINE Alu 3 133 0 23 0 0 0 chr15 37275924 37275947 -48419807 + AT_rich Low_complexity Low_complexity 1 23 0 839 128 26 150 chr15 37276498 37276665 -48419089 + L1MB2 LINE L1 5934 6067 -104 1418 159 65 47 chr15 37276665 37276941 -48418813 - AluJb SINE Alu -29 283 3 839 128 26 150 chr15 37276941 37277000 -48418754 + L1MB2 LINE L1 6067 6132 -39 3001 206 39 47 chr15 37277156 37277874 -48417880 - L1ME1 LINE L1 -32 6134 5412 1761 176 3 6 chr15 37277874 37278187 -48417567 + AluJb SINE Alu 1 312 0 3001 206 39 47 chr15 37278187 37278235 -48417519 - L1ME1 LINE L1 -754 5412 5365 1698 200 3 0 chr15 37278235 37278535 -48417219 - AluJb SINE Alu -11 301 1 3001 206 39 47 chr15 37278535 37278626 -48417128 - L1ME1 LINE L1 -801 5365 5275 1204 194 171 8 chr15 37278626 37278889 -48416865 + AluSx SINE Alu 1 306 -6 3001 206 39 47 chr15 37278889 37279238 -48416516 - L1ME1 LINE L1 -891 5275 4925 1806 165 3 7 chr15 37279256 37279565 -48416189 + AluJb SINE Alu 1 308 -4 21 57 0 0 chr15 37279632 37279667 -48416087 + AT_rich Low_complexity Low_complexity 1 35 0 2252 91 6 22 chr15 37280260 37280578 -48415176 + AluSq SINE Alu 1 313 0 2133 113 0 0 chr15 37281418 37281701 -48414053 + AluSq SINE Alu 1 283 -30 211 211 0 0 chr15 37281783 37281821 -48413933 - MIR SINE MIR -75 133 96 462 204 19 0 chr15 37282049 37282152 -48413602 + L1ME LINE L1 5638 5742 -424 1969 134 3 7 chr15 37282292 37282591 -48413163 + AluSq SINE Alu 1 298 -15 301 254 82 9 chr15 37282713 37282823 -48412931 + L1MB3 LINE L1 4491 4608 -1538 387 325 63 29 chr15 37282930 37283308 -48412446 + L1MB3 LINE L1 4757 5147 -999 1776 158 3 7 chr15 37283338 37283622 -48412132 + AluJb SINE Alu 17 299 -13 714 209 32 114 chr15 37283691 37284006 -48411748 + L1MB3 LINE L1 5254 5542 -2266 330 105 18 0 chr15 37284574 37284631 -48411123 + Alu SINE Alu 3 60 -240 2419 132 66 2 chr15 37284631 37285071 -48410683 + L1MB3 LINE L1 5699 6166 -17 315 176 0 0 chr15 37285173 37285224 -48410530 + LTR16B LTR ERVL 414 464 0 309 282 107 10 chr15 37285332 37285435 -48410319 + L2 LINE L2 3189 3301 -12 229 363 0 11 chr15 37285460 37285551 -48410203 - L2 LINE L2 -830 2484 2395 271 294 129 6 chr15 37285977 37286140 -48409614 + L1 LINE L1 4037 4219 -1927 307 335 18 41 chr15 37286222 37286392 -48409362 + L1 LINE L1 4301 4466 -1680 2364 81 0 3 chr15 37286493 37286791 -48408963 - AluSx SINE Alu -15 297 1 2071 114 7 0 chr15 37287596 37287885 -48407869 + AluSx SINE Alu 1 291 -21 456 285 112 11 chr15 37288016 37288195 -48407559 + MIR SINE MIR 29 225 -37 2089 135 0 0 chr15 37288305 37288602 -48407152 + AluSx SINE Alu 1 297 -15 1483 78 37 14 chr15 37288618 37288836 -48406918 + L1PB1 LINE L1 5928 6150 -1 312 192 51 40 chr15 37289480 37289707 -48406047 + (TA)n Simple_repeat Simple_repeat 1 229 0 2214 132 0 0 chr15 37289776 37290079 -48405675 - AluSx SINE Alu -9 303 1 32 26 0 0 chr15 37290490 37290529 -48405225 + AT_rich Low_complexity Low_complexity 1 39 0 1668 141 13 61 chr15 37290529 37290842 -48404912 + AluJb SINE Alu 13 310 -2 2418 92 0 3 chr15 37291697 37292002 -48403752 + AluSq SINE Alu 1 304 -9 549 240 25 99 chr15 37292521 37292663 -48403091 + L1MC4a LINE L1 5566 5678 -2130 2219 88 3 27 chr15 37292663 37292959 -48402795 - AluSg SINE Alu -15 295 7 549 240 25 99 chr15 37292959 37293099 -48402655 + L1MC4a LINE L1 5678 5827 -1981 380 301 48 38 chr15 37293284 37293470 -48402284 + L1MC4a LINE L1 6101 6288 -1520 272 89 22 0 chr15 37293513 37293558 -48402196 - MADE1 DNA Mariner 0 80 35 1208 214 3 64 chr15 37293806 37294119 -48401635 + AluJo SINE Alu 2 295 -17 1382 220 35 77 chr15 37294133 37294224 -48401530 + L1MC5 LINE L1 6643 6736 -1225 2161 106 3 3 chr15 37294224 37294517 -48401237 + AluSc SINE Alu 1 293 -16 1382 220 35 77 chr15 37294517 37294975 -48400779 + L1MC5 LINE L1 6736 7166 -795 2279 96 3 0 chr15 37294975 37295267 -48400487 + AluSp SINE Alu 1 293 -20 1382 220 35 77 chr15 37295267 37295339 -48400415 + L1MC5 LINE L1 7166 7239 -722 226 193 0 70 chr15 37295456 37295513 -48400241 + L1MC5 LINE L1 7306 7358 -603 231 275 131 0 chr15 37295569 37295729 -48400025 + L1MC4 LINE L1 7861 8041 -1 2430 65 3 0 chr15 37296392 37296683 -48399071 - AluSp SINE Alu -20 293 2 1600 171 13 23 chr15 37297109 37297418 -48398336 + AluJb SINE Alu 7 312 0 1927 140 26 69 chr15 37297562 37297879 -48397875 + THE1B LTR MaLR 2 302 -62 1798 120 68 20 chr15 37297879 37298171 -48397583 + AluSx SINE Alu 1 306 -6 1927 140 26 69 chr15 37298171 37298232 -48397522 + THE1B LTR MaLR 302 364 0 2351 122 25 5 chr15 37298232 37298745 -48397009 + THE1B-int LTR MaLR 1 563 -1017 1583 88 22 0 chr15 37298743 37298971 -48396783 + THE1B-int LTR MaLR 1348 1580 0 * 2271 112 39 17 chr15 37298971 37299327 -48396427 + THE1B LTR MaLR 1 364 0 203 301 27 55 chr15 37299450 37299523 -48396231 + MIR SINE MIR 41 111 -97 469 242 53 23 chr15 37299685 37299817 -48395937 + MIR SINE MIR 127 262 0 348 251 61 20 chr15 37299853 37300099 -48395655 + L1MC4a LINE L1 5557 5846 -1962 1418 204 4 0 chr15 37301557 37301821 -48393933 + AluJb SINE Alu 39 303 -9 2201 129 0 0 chr15 37302001 37302295 -48393459 + AluSx SINE Alu 1 294 -18 527 211 152 25 chr15 37304344 37304548 -48391206 - L1ME3A LINE L1 0 6170 5941 1549 152 75 50 chr15 37305006 37305160 -48390594 + L1MB8 LINE L1 5461 5610 -568 2149 121 3 3 chr15 37305160 37305458 -48390296 + AluSx SINE Alu 1 298 -14 1549 152 75 50 chr15 37305458 37305664 -48390090 + L1MB8 LINE L1 5610 5830 -348 978 152 123 9 chr15 37305717 37305928 -48389826 + Tigger7 DNA MER2_type 2251 2485 -2 855 155 72 107 chr15 37305930 37306122 -48389632 + L1MB8 LINE L1 5828 6025 -153 1996 85 64 4 chr15 37306122 37306403 -48389351 + AluSq SINE Alu 1 298 -15 2253 101 3 16 chr15 37306407 37306714 -48389040 + AluSx SINE Alu 1 303 -9 855 155 72 107 chr15 37306714 37306806 -48388948 + L1MB8 LINE L1 6028 6107 -71 2249 102 3 0 chr15 37308210 37308515 -48387239 + AluSp SINE Alu 1 306 -7 243 224 149 0 chr15 37308768 37308835 -48386919 - MER58A DNA MER1_type -26 81 5 329 132 0 0 chr15 37309289 37309342 -48386412 - AluJo SINE Alu -20 282 230 279 211 18 0 chr15 37309340 37309397 -48386357 + AluJo/FRAM SINE Alu 189 246 -56 * 1275 175 14 5 chr15 37309397 37309614 -48386140 - AluJo SINE Alu -85 227 9 705 200 57 7 chr15 37309649 37309789 -48385965 - FRAM SINE Alu -30 146 1 641 219 9 0 chr15 37309888 37310002 -48385752 - FLAM_A SINE Alu -17 116 2 2316 101 0 3 chr15 37310945 37311252 -48384502 + AluSx SINE Alu 1 306 -6 356 273 153 0 chr15 37311330 37311480 -48384274 - L1M4 LINE L1 -765 5381 5209 2384 91 0 3 chr15 37312484 37312791 -48382963 - AluSx SINE Alu -6 306 1 926 229 0 0 chr15 37312797 37312972 -48382782 - FAM SINE Alu 0 175 1 540 255 55 21 chr15 37313196 37313341 -48382413 - MIR SINE MIR -112 150 1 286 232 99 63 chr15 37313539 37313681 -48382073 + L1MC4a LINE L1 5520 5666 -2142 323 229 131 46 chr15 37313684 37313837 -48381917 + L1MC4a LINE L1 5732 5897 -1911 919 124 0 0 chr15 37314660 37314789 -48380965 - FLAM_C SINE Alu -4 129 1 11274 121 33 108 chr15 37316113 37317867 -48377887 + Tigger1 DNA MER2_type 55 1938 -480 1829 149 7 39 chr15 37317867 37318176 -48377578 - AluSx SINE Alu -11 301 3 1421 210 57 4 chr15 37318180 37318461 -48377293 - AluJb SINE Alu -16 296 1 11274 121 33 108 chr15 37318461 37318615 -48377139 + Tigger1 DNA MER2_type 1941 2105 -313 2352 63 17 7 chr15 37318615 37318916 -48376838 + AluY SINE Alu 1 304 -7 11274 121 33 108 chr15 37318916 37319555 -48376199 + Tigger1 DNA MER2_type 2105 2418 0 1719 146 16 42 chr15 37319657 37319966 -48375788 - AluJb SINE Alu -11 301 1 2455 62 0 7 chr15 37320046 37320351 -48375403 - AluY SINE Alu -8 303 1 670 214 15 8 chr15 37321194 37321325 -48374429 + FLAM_A SINE Alu 2 133 0 2287 107 3 0 chr15 37322274 37322573 -48373181 - AluSg SINE Alu -10 300 1 265 106 0 0 chr15 37322712 37322759 -48372995 + AluSp/q SINE Alu 255 301 -2 2092 118 4 0 chr15 37322766 37323038 -48372716 - AluSx SINE Alu -34 278 6 959 125 0 0 chr15 37323118 37323262 -48372492 - AluSg/x SINE Alu 0 310 167 200 206 0 0 chr15 37323990 37324024 -48371730 + polypurine Low_complexity Low_complexity 5 38 0 274 231 17 29 chr15 37324026 37324264 -48371490 + GA-rich Low_complexity Low_complexity 1 235 0 2205 92 7 3 chr15 37324745 37325040 -48370714 - AluSp SINE Alu -17 296 1 1332 159 0 19 chr15 37325434 37325641 -48370113 - AluJb SINE Alu -107 205 3 366 284 167 12 chr15 37325756 37325918 -48369836 + MIR SINE MIR 3 189 -73 313 197 57 74 chr15 37326335 37326457 -48369297 - MLT1K LTR MaLR 0 588 469 288 171 158 0 chr15 37326669 37326751 -48369003 + Charlie4 DNA MER1_type 5 99 -1862 2495 63 0 3 chr15 37326809 37327112 -48368642 - AluY SINE Alu -7 304 3 2202 147 0 0 chr15 37327914 37328226 -48367528 + AluSx SINE Alu 1 312 0 458 159 192 0 chr15 37328228 37328379 -48367375 + Charlie1 DNA MER1_type 2433 2612 -149 243 313 35 26 chr15 37328499 37328614 -48367140 + L3 LINE CR1 646 761 -816 1904 170 7 3 chr15 37328643 37328943 -48366811 - AluJb SINE Alu -11 301 1 793 201 98 49 chr15 37329333 37329357 -48366397 + L1ME1 LINE L1 1903 1924 -4472 2150 102 11 7 chr15 37329357 37329667 -48366087 + AluSx SINE Alu 1 311 0 793 201 98 49 chr15 37329667 37329969 -48365785 + L1ME1 LINE L1 1924 2246 -4150 1613 238 142 47 chr15 37329989 37330097 -48365657 + L1ME1 LINE L1 4875 4971 -1264 1843 151 3 10 chr15 37330097 37330401 -48365353 + AluJo SINE Alu 1 302 -10 1613 238 142 47 chr15 37330401 37331538 -48364216 + L1ME1 LINE L1 4971 6226 -9 2079 101 0 7 chr15 37331550 37331827 -48363927 + AluSg1 SINE Alu 21 295 -14 265 204 88 26 chr15 37331997 37332110 -48363644 + L1MC4 LINE L1 7922 8041 -1 926 233 49 28 chr15 37332120 37332408 -48363346 + L1ME2 LINE L1 5861 6154 -10 441 276 92 7 chr15 37332642 37332794 -48362960 + MIR SINE MIR 40 204 -58 604 141 99 16 chr15 37333297 37333418 -48362336 + FLAM_C SINE Alu 1 131 -12 548 231 130 6 chr15 37334742 37334911 -48360843 - L2 LINE L2 -6 3307 3118 1941 152 0 10 chr15 37334914 37335210 -48360544 + AluJb SINE Alu 2 294 -18 1648 172 38 0 chr15 37335210 37335500 -48360254 + AluJb SINE Alu 1 301 -11 571 194 23 16 chr15 37335506 37335635 -48360119 + FAM SINE Alu 1 42 -7 310 282 153 59 chr15 37335670 37335908 -48359846 - L2 LINE L2 -269 3044 2787 21 0 0 0 chr15 37336047 37336068 -48359686 + AT_rich Low_complexity Low_complexity 1 21 0 590 209 9 0 chr15 37336424 37336539 -48359215 + Tigger7 DNA MER2_type 1 116 -589 981 136 298 15 chr15 37336556 37336821 -48358933 + Tigger7 DNA MER2_type 2148 2487 0 258 240 50 10 chr15 37337244 37337344 -48358410 + HAL1 LINE L1 1222 1325 -1182 637 300 91 0 chr15 37337345 37337565 -48358189 + L2 LINE L2 2820 3059 -254 243 261 182 11 chr15 37337692 37337780 -48357974 + L2 LINE L2 3203 3305 -8 2019 129 10 0 chr15 37337891 37338186 -48357568 - AluSx SINE Alu -14 298 1 1491 171 4 0 chr15 37338221 37338461 -48357293 + AluJb SINE Alu 69 309 -3 4322 186 78 57 chr15 37338467 37338517 -48357237 - Charlie1a DNA MER1_type -1361 1400 1353 2043 163 89 0 chr15 37338517 37338909 -48356845 + MSTA LTR MaLR 1 427 -1 4322 186 78 57 chr15 37338909 37338976 -48356778 - Charlie1a DNA MER1_type -1408 1353 1289 2203 106 7 0 chr15 37338976 37339269 -48356485 + AluSx SINE Alu 1 295 -17 4322 186 78 57 chr15 37339269 37340150 -48355604 - Charlie1a DNA MER1_type -1472 1289 428 1358 116 19 0 chr15 37340150 37340366 -48355388 + L1PA13 LINE L1 5944 6163 0 4322 186 78 57 chr15 37340366 37340409 -48355345 - Charlie1a DNA MER1_type -2333 428 387 2191 108 0 16 chr15 37340409 37340724 -48355030 + AluSg SINE Alu 1 310 0 4322 186 78 57 chr15 37340724 37340771 -48354983 - Charlie1a DNA MER1_type -2374 387 342 2208 98 3 13 chr15 37340771 37341076 -48354678 - AluSc SINE Alu -7 302 1 4322 186 78 57 chr15 37341076 37341353 -48354401 - Charlie1a DNA MER1_type -2419 342 2 254 298 53 53 chr15 37341613 37341801 -48353953 + HAL1 LINE L1 2316 2503 -4 267 31 0 0 chr15 37341934 37341966 -48353788 + (A)n Simple_repeat Simple_repeat 1 32 0 1944 145 0 32 chr15 37342010 37342321 -48353433 - AluSx SINE Alu -11 301 1 1232 216 74 113 chr15 37342706 37342847 -48352907 + L1MC4 LINE L1 6796 6941 -1101 2194 74 7 33 chr15 37342847 37343146 -48352608 + AluSg1 SINE Alu 1 291 -18 1232 216 74 113 chr15 37343146 37343533 -48352221 + L1MC4 LINE L1 6941 7303 -739 1088 228 76 55 chr15 37343538 37343843 -48351911 + L1MC4 LINE L1 7600 7918 -124 1988 129 34 3 chr15 37343843 37344138 -48351616 + AluSx SINE Alu 1 304 -8 1088 228 76 55 chr15 37344138 37344266 -48351488 + L1MC4 LINE L1 7918 8042 0 2093 125 7 3 chr15 37344273 37344578 -48351176 + AluSx SINE Alu 1 306 -6 2025 105 0 92 chr15 37345070 37345385 -48350369 - AluSx SINE Alu -26 286 1 2103 124 0 13 chr15 37345429 37345728 -48350026 - AluSx SINE Alu -17 295 1 1780 185 0 6 chr15 37345762 37346076 -48349678 - AluJb SINE Alu 0 312 1 536 250 44 85 chr15 37346087 37346268 -48349486 - L1MC5 LINE L1 -37 7924 7737 2024 111 7 4 chr15 37346268 37346574 -48349180 + AluSx SINE Alu 2 308 0 536 250 44 85 chr15 37346574 37346803 -48348951 - L1MC5 LINE L1 -224 7737 7530 648 267 175 35 chr15 37346923 37347238 -48348516 + L2 LINE L2 2938 3296 -17 1836 123 40 27 chr15 37347298 37347598 -48348156 - AluSg SINE Alu -6 304 1 1968 112 37 17 chr15 37347938 37348234 -48347520 - AluSx SINE Alu -10 302 1 184 303 111 62 chr15 37348365 37348527 -48347227 - MIR3 SINE MIR -9 199 30 22 35 0 0 chr15 37348783 37348812 -48346942 + AT_rich Low_complexity Low_complexity 1 29 0 259 138 15 31 chr15 37350847 37350912 -48344842 + (CCG)n Simple_repeat Simple_repeat 2 65 0 493 281 122 0 chr15 37351516 37351712 -48344042 + MIR SINE MIR 37 256 -6 2181 101 7 0 chr15 37351797 37352095 -48343659 + AluSx SINE Alu 1 300 -12 2190 85 0 3 chr15 37352095 37352430 -48343324 + AluY SINE Alu 1 334 0 386 197 0 0 chr15 37352646 37352712 -48343042 + MER3 DNA MER1_type 46 111 -98 191 184 0 20 chr15 37352713 37352762 -48342992 + CT-rich Low_complexity Low_complexity 6 53 0 22 0 0 0 chr15 37352762 37352784 -48342970 + AT_rich Low_complexity Low_complexity 1 22 0 625 128 60 0 chr15 37352784 37352917 -48342837 + MER3 DNA MER1_type 2369 2509 0 626 153 172 61 chr15 37352933 37353096 -48342658 + MER20 DNA MER1_type 37 217 -2 287 349 71 18 chr15 37353128 37353409 -48342345 - L2 LINE L2 -1639 1675 1380 400 141 41 0 chr15 37353922 37354043 -48341711 + (TA)n Simple_repeat Simple_repeat 2 127 0 329 371 14 9 chr15 37354084 37354297 -48341457 + L2 LINE L2 1462 1675 -1639 1977 133 7 0 chr15 37355384 37355670 -48340084 + AluSx SINE Alu 1 288 -24 1710 106 34 8 chr15 37355995 37356231 -48339523 + AluSx SINE Alu 1 242 -70 771 69 0 0 chr15 37356251 37356353 -48339401 + (GAA)n Simple_repeat Simple_repeat 3 104 0 1735 186 3 7 chr15 37356844 37357140 -48338614 + AluJo SINE Alu 1 295 -17 215 269 19 0 chr15 37357158 37357210 -48338544 + MIR3 SINE MIR 149 201 -7 823 171 14 0 chr15 37357496 37357642 -48338112 + FAM SINE Alu 1 48 -1 2219 99 3 0 chr15 37358422 37358716 -48337038 + AluSp SINE Alu 1 295 -18 2107 144 0 3 chr15 37359129 37359442 -48336312 - AluSx SINE Alu 0 312 1 1965 122 6 80 chr15 37359461 37359798 -48335956 - AluSx SINE Alu 0 312 1 527 259 124 24 chr15 37359828 37360118 -48335636 + HAL1 LINE L1 920 1238 -1269 492 110 0 49 chr15 37360148 37360230 -48335524 + FLAM_A SINE Alu 54 131 -11 329 259 35 0 chr15 37360233 37360318 -48335436 + HAL1 LINE L1 1230 1317 -1190 1935 178 16 22 chr15 37360345 37360711 -48335043 - L1M4 LINE L1 -405 5769 5406 1825 154 41 3 chr15 37360814 37361107 -48334647 + AluJb SINE Alu 1 304 -8 268 263 166 60 chr15 37361144 37361243 -48334511 - L1MEc LINE L1 -4453 1857 1770 2113 105 0 26 chr15 37361243 37361547 -48334207 - AluSg SINE Alu -14 296 1 268 263 166 60 chr15 37361547 37361674 -48334080 - L1MEc LINE L1 -4540 1770 1658 348 83 0 0 chr15 37361674 37361722 -48334032 + (TA)n Simple_repeat Simple_repeat 2 49 0 2408 81 3 0 chr15 37361722 37362017 -48333737 - AluSp SINE Alu -17 296 1 268 263 166 60 chr15 37362017 37362324 -48333430 - L1MEc LINE L1 -4651 1659 1265 328 316 71 49 chr15 37362334 37362923 -48332831 - L1MEc LINE L1 -4931 1188 587 2024 134 3 10 chr15 37362997 37363296 -48332458 - AluSx SINE Alu -13 299 3 540 258 8 0 chr15 37363673 37363793 -48331961 + L2 LINE L2 2239 2359 -955 229 204 19 0 chr15 37363870 37363924 -48331830 - L1P5 LINE L1 -719 5432 5378 2317 104 0 7 chr15 37364008 37364316 -48331438 + AluSx SINE Alu 1 306 -6 25 0 0 0 chr15 37364388 37364413 -48331341 + AT_rich Low_complexity Low_complexity 1 25 0 4778 259 66 65 chr15 37364413 37365310 -48330444 + L1MEc LINE L1 75 969 -5246 1963 162 0 3 chr15 37365310 37365612 -48330142 + AluJb SINE Alu 1 301 -11 4778 259 66 65 chr15 37365612 37365793 -48329961 + L1MEc LINE L1 969 1148 -5067 2299 104 0 3 chr15 37365793 37366091 -48329663 + AluSg SINE Alu 1 297 -13 4778 259 66 65 chr15 37366091 37366330 -48329424 + L1MEc LINE L1 1148 1385 -4830 2081 129 10 3 chr15 37366330 37366632 -48329122 - AluSx SINE Alu -8 304 1 4778 259 66 65 chr15 37366632 37366735 -48329019 + L1MEc LINE L1 1385 1486 -4729 1703 172 54 3 chr15 37366735 37367031 -48328723 + AluJb SINE Alu 1 311 -1 4778 259 66 65 chr15 37367031 37367880 -48327874 + L1MEc LINE L1 1486 2332 -3883 1465 151 0 0 chr15 37367880 37368092 -48327662 + AluJo SINE Alu 1 212 -100 4778 259 66 65 chr15 37368092 37368136 -48327618 + L1MEc LINE L1 2332 2374 -3841 2251 118 0 0 chr15 37368136 37368441 -48327313 + AluSc SINE Alu 1 305 -4 4778 259 66 65 chr15 37368441 37368682 -48327072 + L1MEc LINE L1 2374 2613 -3602 180 0 0 0 chr15 37368682 37368702 -48327052 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2163 88 3 11 chr15 37368705 37368989 -48326765 - AluSx SINE Alu -30 282 1 4778 259 66 65 chr15 37368989 37369038 -48326716 + L1MEc LINE L1 2614 2661 -3554 2324 103 0 0 chr15 37369038 37369340 -48326414 - AluSx SINE Alu -10 302 1 4778 259 66 65 chr15 37369340 37369620 -48326134 + L1MEc LINE L1 2661 2939 -3276 2255 92 3 3 chr15 37369620 37369915 -48325839 + AluSx SINE Alu 1 295 -17 4778 259 66 65 chr15 37369915 37369929 -48325825 + L1MEc LINE L1 2939 2951 -3264 2271 93 0 17 chr15 37369929 37370229 -48325525 + AluSq SINE Alu 1 295 -18 1927 95 8 0 chr15 37370236 37370488 -48325266 - AluSx SINE Alu -58 254 1 4778 259 66 65 chr15 37370488 37370701 -48325053 + L1MEc LINE L1 2956 3208 -3007 771 161 8 15 chr15 37370838 37370968 -48324786 - L1MC3 LINE L1 -232 7553 7425 602 227 9 0 chr15 37372115 37372225 -48323529 + AluJb SINE Alu 11 121 -191 180 0 0 0 chr15 37372225 37372245 -48323509 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 445 243 11 88 chr15 37372245 37372426 -48323328 - AluY SINE Alu -26 285 119 518 230 24 24 chr15 37372723 37372849 -48322905 + AluJb SINE Alu 11 136 -176 1398 190 7 34 chr15 37372851 37373146 -48322608 - AluJb SINE Alu -25 287 1 371 291 9 9 chr15 37373183 37373293 -48322461 - MIR3 SINE MIR -30 178 69 240 255 149 0 chr15 37373352 37373446 -48322308 - MIR SINE MIR -95 167 60 1875 165 7 3 chr15 37373546 37373849 -48321905 + AluJb SINE Alu 1 304 -8 507 60 0 0 chr15 37373850 37373917 -48321837 + (CA)n Simple_repeat Simple_repeat 2 68 0 1651 136 37 83 chr15 37373955 37374129 -48321625 - AluJo SINE Alu -3 309 128 201 74 0 0 chr15 37374129 37374156 -48321598 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 2105 122 0 0 chr15 37374156 37374444 -48321310 - AluSx SINE Alu -24 288 1 1651 136 37 83 chr15 37374444 37374592 -48321162 - AluJo SINE Alu -182 130 1 520 209 0 27 chr15 37374597 37374707 -48321047 + FLAM_C SINE Alu 30 136 -7 1731 131 25 62 chr15 37374798 37375118 -48320636 + AluSx SINE Alu 5 312 0 2125 101 4 0 chr15 37375138 37375438 -48320316 + AluSx SINE Alu 6 306 0 1783 154 13 13 chr15 37375529 37375841 -48319913 - AluJb SINE Alu 0 312 1 2252 119 7 3 chr15 37376403 37376706 -48319048 + AluSq SINE Alu 1 304 -9 233 271 14 29 chr15 37377071 37377141 -48318613 + L1MC5 LINE L1 7845 7913 -48 572 158 11 32 chr15 37377141 37377236 -48318518 + AluJo SINE Alu 122 214 -98 * 690 168 0 9 chr15 37377234 37377347 -48318407 - AluJb SINE Alu -2 310 199 246 207 0 0 chr15 37377347 37377405 -48318349 + FLAM_A SINE Alu 75 132 -1 1359 176 96 79 chr15 37377580 37377861 -48317893 + L1M4 LINE L1 5292 5586 -598 2148 117 0 0 chr15 37377861 37378169 -48317585 + AluSx SINE Alu 1 308 0 1359 176 96 79 chr15 37378169 37378322 -48317432 + L1M4 LINE L1 5586 5735 -449 1329 266 7 3 chr15 37378441 37378730 -48317024 - MLT1F LTR MaLR -241 301 12 2151 117 0 0 chr15 37379013 37379323 -48316431 + AluSx SINE Alu 1 310 0 691 222 63 6 chr15 37379596 37379771 -48315983 - L1ME3A LINE L1 -339 5814 5610 676 250 12 42 chr15 37379773 37379964 -48315790 + AluJb SINE Alu 137 312 0 533 271 52 22 chr15 37379966 37380243 -48315511 - L1ME3A LINE L1 -538 5615 5343 255 61 0 0 chr15 37380260 37380293 -48315461 + (CA)n Simple_repeat Simple_repeat 1 33 0 1679 173 0 46 chr15 37380345 37380668 -48315086 - AluSg SINE Alu 0 310 3 24 0 0 0 chr15 37380937 37380961 -48314793 + AT_rich Low_complexity Low_complexity 1 24 0 934 268 10 34 chr15 37380961 37381256 -48314498 - AluSx SINE Alu -14 288 1 421 253 112 24 chr15 37381264 37381513 -48314241 - L1ME3A LINE L1 -825 5304 5034 2514 264 155 88 chr15 37381891 37382335 -48313419 - L1ME3A LINE L1 -1197 4932 4519 2225 118 0 3 chr15 37382335 37382632 -48313122 + AluSx SINE Alu 3 298 -14 2354 84 0 26 chr15 37382633 37382942 -48312812 + AluY SINE Alu 1 301 -10 2514 264 155 88 chr15 37382942 37383083 -48312671 - L1ME3A LINE L1 -1610 4519 4389 2169 105 0 3 chr15 37383083 37383400 -48312354 + AluSx SINE Alu 1 316 0 2514 264 155 88 chr15 37383400 37383474 -48312280 - L1ME3A LINE L1 -1740 4389 4321 1491 170 0 102 chr15 37383474 37383798 -48311956 + AluJo SINE Alu 1 291 -21 2514 264 155 88 chr15 37383798 37384212 -48311542 - L1ME3A LINE L1 -1808 4321 3936 2319 114 0 0 chr15 37384212 37384520 -48311234 - AluSg SINE Alu -2 308 1 2514 264 155 88 chr15 37384520 37384691 -48311063 - L1ME3A LINE L1 -2193 3936 3778 1650 183 7 14 chr15 37384691 37384986 -48310768 - AluSx SINE Alu -17 295 3 2514 264 155 88 chr15 37384986 37385174 -48310580 - L1ME3A LINE L1 -2351 3778 3604 1532 203 0 10 chr15 37385174 37385464 -48310290 - AluSx SINE Alu -25 287 1 2514 264 155 88 chr15 37385464 37385503 -48310251 - L1ME3A LINE L1 -2525 3604 3569 2377 74 10 3 chr15 37385503 37385799 -48309955 - AluY SINE Alu -13 298 1 2514 264 155 88 chr15 37385799 37386730 -48309024 - L1ME3A LINE L1 -2560 3569 2360 1387 130 12 83 chr15 37386754 37386804 -48308950 + MER46A DNA MER2_type 2 54 -2677 6352 96 15 12 chr15 37386804 37387854 -48307900 - L1PB1 LINE L1 -3 6148 5078 1387 130 12 83 chr15 37387854 37387973 -48307781 + MER46A DNA MER2_type 54 150 -2581 2418 154 58 14 chr15 37387973 37388388 -48307366 + Tigger2a DNA MER2_type 1 433 -1 1387 130 12 83 chr15 37388388 37388470 -48307284 + MER46A DNA MER2_type 150 236 0 2377 90 0 3 chr15 37388548 37388859 -48306895 - AluSg SINE Alu 0 310 1 279 283 169 17 chr15 37388913 37389150 -48306604 - L1ME3A LINE L1 -4093 2217 1945 2203 113 10 0 chr15 37389326 37389628 -48306126 + AluSg SINE Alu 2 306 -4 2317 91 3 0 chr15 37389631 37389928 -48305826 + AluY SINE Alu 3 300 -11 2028 99 34 27 chr15 37389938 37390232 -48305522 + AluSc SINE Alu 1 296 -13 645 257 54 21 chr15 37390239 37390524 -48305230 - L1MEd LINE L1 -4862 1257 1096 2170 113 3 0 chr15 37390602 37390904 -48304850 - AluSx SINE Alu -9 303 1 245 273 36 0 chr15 37390963 37391018 -48304736 - L1MEd LINE L1 -5483 636 580 1929 116 3 73 chr15 37391162 37391490 -48304264 + AluSx SINE Alu 1 305 -7 2405 68 0 3 chr15 37391765 37392060 -48303694 + AluY SINE Alu 1 294 -17 974 143 0 0 chr15 37392254 37392387 -48303367 + FLAM_C SINE Alu 1 133 0 1888 120 4 11 chr15 37392434 37392710 -48303044 + AluJb SINE Alu 39 312 0 2350 102 0 3 chr15 37392775 37393079 -48302675 - AluSx SINE Alu -7 305 3 1530 107 21 41 chr15 37393081 37393324 -48302430 - AluSx SINE Alu -15 297 60 493 204 19 19 chr15 37393387 37393495 -48302259 + MIR SINE MIR 16 123 -85 312 306 108 96 chr15 37394456 37395184 -48300570 - L1M2 LINE L1 -5478 1371 635 320 69 14 42 chr15 37397493 37397565 -48298189 + (TA)n Simple_repeat Simple_repeat 1 70 0 835 150 43 7 chr15 37397565 37397705 -48298049 - FRAM SINE Alu -24 152 8 1783 97 39 81 chr15 37397849 37398157 -48297597 + AluSx SINE Alu 1 295 -17 29 0 0 0 chr15 37398341 37398370 -48297384 + AT_rich Low_complexity Low_complexity 1 29 0 754 130 65 32 chr15 37398561 37398684 -48297070 + FLAM_C SINE Alu 1 127 -6 1904 84 76 0 chr15 37398807 37399093 -48296661 - AluSp SINE Alu 0 306 1 265 321 27 0 chr15 37399190 37399302 -48296452 + MIR3 SINE MIR 89 203 -5 438 266 37 0 chr15 37400642 37400751 -48295003 + L2 LINE L2 3197 3309 -4 2011 114 3 88 chr15 37400803 37401145 -48294609 + AluSq SINE Alu 1 313 0 2237 114 3 0 chr15 37401461 37401759 -48293995 + AluSg SINE Alu 1 299 -11 489 299 35 35 chr15 37402173 37402347 -48293407 - MER5B DNA MER1_type -1 177 4 2013 150 0 0 chr15 37402735 37403035 -48292719 + AluSx SINE Alu 1 300 -12 22 35 0 0 chr15 37403280 37403309 -48292445 + AT_rich Low_complexity Low_complexity 1 29 0 859 199 13 0 chr15 37403389 37403545 -48292209 + AluJb SINE Alu 137 294 -18 644 209 54 9 chr15 37403706 37403971 -48291783 + MER46C DNA MER2_type 5 317 -21 2274 102 0 16 chr15 37404258 37404573 -48291181 + AluSq SINE Alu 1 310 -3 1400 225 13 7 chr15 37404996 37405298 -48290456 - AluJb SINE Alu -8 304 1 2185 121 0 13 chr15 37405357 37405664 -48290090 + AluSx SINE Alu 1 303 -9 414 119 86 4 chr15 37405688 37405933 -48289821 + (TA)n Simple_repeat Simple_repeat 1 265 0 2202 125 0 3 chr15 37405974 37406279 -48289475 - AluSq SINE Alu -8 305 2 1738 128 4 0 chr15 37406363 37406605 -48289149 + AluSg/x SINE Alu 65 307 -5 269 236 193 62 chr15 37407062 37407223 -48288531 + MIR SINE MIR 48 229 -33 2199 116 3 0 chr15 37407398 37407700 -48288054 - AluSx SINE Alu -9 303 1 1991 147 3 0 chr15 37407708 37408032 -48287722 - AluSx SINE Alu 0 325 1 1685 164 3 20 chr15 37408035 37408340 -48287414 - AluSx SINE Alu -12 300 1 315 284 116 9 chr15 37408434 37408596 -48287158 + MIR SINE MIR 39 212 -50 1339 151 18 127 chr15 37408730 37409061 -48286693 - AluJo SINE Alu -16 296 2 2013 114 14 7 chr15 37409164 37409461 -48286293 + AluSx SINE Alu 3 301 -11 24 0 0 0 chr15 37410132 37410156 -48285598 + AT_rich Low_complexity Low_complexity 1 24 0 2188 107 0 38 chr15 37410319 37410638 -48285116 + AluSx SINE Alu 1 307 -5 2341 95 7 0 chr15 37411900 37412195 -48283559 + AluSx SINE Alu 1 297 -15 26 0 0 0 chr15 37412387 37412413 -48283341 + AT_rich Low_complexity Low_complexity 1 26 0 2124 117 10 0 chr15 37413153 37413460 -48282294 - AluSg SINE Alu 0 310 1 22 56 0 0 chr15 37414909 37414945 -48280809 + AT_rich Low_complexity Low_complexity 1 36 0 2400 70 0 13 chr15 37415971 37416273 -48279481 + AluY SINE Alu 1 298 -13 28 29 0 0 chr15 37416760 37416795 -48278959 + AT_rich Low_complexity Low_complexity 1 35 0 2126 125 3 3 chr15 37417330 37417633 -48278121 + AluSg SINE Alu 1 303 -7 2718 192 79 104 chr15 37418106 37419373 -48276381 - L1MC5 LINE L1 -105 7856 6622 1874 152 14 21 chr15 37419705 37419995 -48275759 + AluJo SINE Alu 1 288 -24 2100 147 0 13 chr15 37420013 37420325 -48275429 + AluJb SINE Alu 1 308 -4 312 27 0 0 chr15 37420337 37420374 -48275380 + (CA)n Simple_repeat Simple_repeat 2 38 0 1644 175 4 0 chr15 37420733 37421034 -48274720 - AluJb SINE Alu 0 302 1 242 159 68 0 chr15 37421599 37421643 -48274111 - L2 LINE L2 -4 3309 3263 39 0 0 0 chr15 37422703 37422742 -48273012 + AT_rich Low_complexity Low_complexity 1 39 0 814 153 0 0 chr15 37422748 37422866 -48272888 - FLAM_C SINE Alu -25 118 1 1848 117 55 21 chr15 37423143 37423278 -48272476 + AluSx SINE Alu 1 130 -182 2183 119 0 0 chr15 37423278 37423588 -48272166 + AluSg SINE Alu 1 310 0 1848 117 55 21 chr15 37423588 37423742 -48272012 + AluSx SINE Alu 130 300 -12 1873 131 0 28 chr15 37423976 37424266 -48271488 + AluJb SINE Alu 1 282 -30 326 233 27 0 chr15 37424489 37424562 -48271192 + MER5A DNA MER1_type 1 75 -114 1250 34 0 0 chr15 37424595 37424743 -48271011 - L1PA4 LINE L1 -8 6147 6000 599 147 165 0 chr15 37424746 37424855 -48270899 + MER5A DNA MER1_type 63 189 0 1111 128 12 103 chr15 37424953 37425089 -48270665 + AluSx SINE Alu 1 107 -205 1606 182 7 0 chr15 37425089 37425380 -48270374 + AluSc SINE Alu 1 293 -16 1111 128 12 103 chr15 37425380 37425485 -48270269 + AluSx SINE Alu 107 220 -92 1718 142 3 36 chr15 37425743 37426045 -48269709 + AluJo SINE Alu 5 296 -16 688 173 16 16 chr15 37426064 37426191 -48269563 + FLAM_A SINE Alu 1 127 -6 364 113 42 14 chr15 37426530 37426601 -48269153 - AluJ/FRAM SINE Alu -6 296 224 25 0 0 0 chr15 37427427 37427452 -48268302 + AT_rich Low_complexity Low_complexity 1 25 0 192 111 0 0 chr15 37429190 37429226 -48266528 + (T)n Simple_repeat Simple_repeat 1 36 0 180 0 0 0 chr15 37429532 37429552 -48266202 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 1878 163 0 7 chr15 37431659 37431954 -48263800 - AluSx SINE Alu -14 298 6 2119 137 0 0 chr15 37433231 37433530 -48262224 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr15 37434152 37434175 -48261579 + AT_rich Low_complexity Low_complexity 1 23 0 606 230 59 20 chr15 37435546 37435698 -48260056 - MIR SINE MIR -85 177 20 1789 207 83 62 chr15 37436332 37437100 -48258654 - MER20B DNA MER1_type 0 784 1 182 240 80 20 chr15 37438204 37438254 -48257500 + MIR SINE MIR 24 76 -132 1840 168 3 16 chr15 37440059 37440374 -48255380 - AluSx SINE Alu -1 311 1 29 0 0 0 chr15 37441393 37441422 -48254332 + AT_rich Low_complexity Low_complexity 1 29 0 2064 113 0 39 chr15 37441666 37441977 -48253777 + AluSx SINE Alu 1 299 -13 432 0 0 0 chr15 37441978 37442026 -48253728 + (CA)n Simple_repeat Simple_repeat 2 49 0 1816 145 34 0 chr15 37442425 37442728 -48253026 - AluSg SINE Alu 0 316 5 1509 189 10 17 chr15 37443310 37443606 -48252148 + AluJo SINE Alu 1 294 -18 2278 99 0 0 chr15 37443628 37443912 -48251842 + AluSc SINE Alu 1 284 -25 2084 127 0 10 chr15 37444131 37444431 -48251323 - AluSq SINE Alu -16 297 1 2289 119 0 0 chr15 37444800 37445110 -48250644 - AluSx SINE Alu -2 310 1 1446 154 101 11 chr15 37445949 37446216 -48249538 - AluSg SINE Alu -19 291 1 927 80 0 0 chr15 37446712 37446824 -48248930 - AluSq/x SINE Alu -201 112 1 2187 118 7 0 chr15 37447297 37447603 -48248151 - AluSx SINE Alu -2 310 3 734 172 0 0 chr15 37447897 37448013 -48247741 + AluJb SINE Alu 2 117 -195 1767 149 17 14 chr15 37448253 37448549 -48247205 - AluSx SINE Alu -15 297 1 993 130 0 59 chr15 37448584 37448753 -48247001 - AluSg/x SINE Alu -17 293 135 584 146 18 195 chr15 37448866 37448925 -48246829 - MER5A DNA MER1_type -3 186 118 1626 169 0 30 chr15 37448925 37449220 -48246534 + AluJb SINE Alu 1 286 -26 584 146 18 195 chr15 37449220 37449386 -48246368 - MER5A DNA MER1_type -71 118 1 583 308 36 5 chr15 37449429 37449624 -48246130 + MIR SINE MIR 28 228 -34 326 276 22 37 chr15 37451425 37451559 -48244195 - MIR SINE MIR -10 252 121 2290 98 7 3 chr15 37451819 37452125 -48243629 - AluSg SINE Alu -3 307 1 1819 104 0 4 chr15 37452135 37452376 -48243378 - AluSg SINE Alu -15 295 56 823 246 166 24 chr15 37453272 37453508 -48242246 + L2 LINE L2 2829 3030 -283 2093 102 20 10 chr15 37453508 37453802 -48241952 + AluSq SINE Alu 1 297 -16 823 246 166 24 chr15 37453802 37453988 -48241766 + L2 LINE L2 3030 3311 -2 1916 164 7 7 chr15 37454433 37454738 -48241016 - AluSx SINE Alu -7 305 1 2369 103 0 0 chr15 37455442 37455752 -48240002 + AluSx SINE Alu 1 310 -2 2240 94 7 0 chr15 37455762 37456050 -48239704 + AluSg SINE Alu 1 290 -20 180 250 173 58 chr15 37456108 37456212 -48239542 - MER5B DNA MER1_type -61 117 2 787 143 48 0 chr15 37456431 37456557 -48239197 + AluJb SINE Alu 2 133 -179 2282 102 0 0 chr15 37456691 37456984 -48238770 + AluSg1 SINE Alu 1 293 -16 254 183 21 86 chr15 37457003 37457096 -48238658 - MER97a DNA MER1_type? -210 684 598 2292 112 0 3 chr15 37457106 37457402 -48238352 - AluSc SINE Alu -14 295 1 447 93 47 35 chr15 37457402 37457488 -48238266 - MER97b DNA MER1_type? -434 619 533 340 176 118 10 chr15 37457502 37457604 -48238150 - L1M4 LINE L1 -1717 4429 4317 * 3110 198 71 37 chr15 37457602 37458294 -48237460 - L1ME2 LINE L1 -10 6154 5487 2100 114 24 3 chr15 37458294 37458591 -48237163 - AluSq SINE Alu -10 303 1 3110 198 71 37 chr15 37458591 37458676 -48237078 - L1ME2 LINE L1 -677 5487 5406 2197 83 0 28 chr15 37458676 37459007 -48236747 - AluSg SINE Alu 0 323 1 3110 198 71 37 chr15 37459007 37459039 -48236715 - L1ME2 LINE L1 -758 5406 5315 2397 87 3 0 chr15 37459303 37459601 -48236153 - AluSp SINE Alu -14 299 1 1767 111 0 0 chr15 37460227 37460471 -48235283 + AluSg/x SINE Alu 69 312 0 325 216 26 52 chr15 37460471 37460535 -48235219 - L1ME2 LINE L1 -1146 5000 4939 2521 118 64 10 chr15 37460535 37460941 -48234813 - MSTA LTR MaLR 0 428 1 325 216 26 52 chr15 37460941 37460992 -48234762 - L1ME2 LINE L1 -1207 4939 4888 1714 125 0 97 chr15 37460993 37461342 -48234412 + AluSx SINE Alu 1 319 0 338 240 16 50 chr15 37461342 37461463 -48234291 - L1ME2 LINE L1 -1598 4548 4432 1416 246 59 30 chr15 37461784 37462255 -48233499 + MLT1D LTR MaLR 1 485 -20 185 214 134 75 chr15 37462610 37462797 -48232957 + L2 LINE L2 2820 3017 -296 480 258 15 0 chr15 37462832 37462899 -48232855 + Charlie5 DNA MER1_type 2472 2536 -88 2619 35 0 16 chr15 37462899 37463215 -48232539 - AluY SINE Alu 0 311 1 480 258 15 0 chr15 37463215 37463279 -48232475 + Charlie5 DNA MER1_type 2536 2605 -19 256 253 60 80 chr15 37463350 37463500 -48232254 - MER58A DNA MER1_type 0 147 1 2576 60 0 9 chr15 37463524 37463840 -48231914 + AluSq SINE Alu 1 313 0 497 241 195 24 chr15 37463857 37464306 -48231448 + MER77 LTR ERV1 37 597 -8 221 224 0 0 chr15 37465011 37465060 -48230694 + MIR SINE MIR 55 103 -159 1960 250 35 48 chr15 37465180 37465615 -48230139 - L1ME2 LINE L1 -1783 4363 3937 1800 110 47 63 chr15 37465615 37465915 -48229839 + AluSg SINE Alu 1 295 -15 1960 250 35 48 chr15 37465915 37466107 -48229647 - L1ME2 LINE L1 -2209 3937 3744 1532 166 101 0 chr15 37466138 37466415 -48229339 + AluJo SINE Alu 1 305 -7 1937 112 3 44 chr15 37466441 37466736 -48229018 + AluSx SINE Alu 9 291 -21 330 26 0 0 chr15 37466736 37466775 -48228979 + (CA)n Simple_repeat Simple_repeat 2 40 0 629 160 42 42 chr15 37466785 37466929 -48228825 - L1MB8 LINE L1 -12 6166 6023 286 151 0 0 chr15 37466929 37466982 -48228772 - AluSp/q SINE Alu -5 298 246 233 73 0 73 chr15 37466977 37467018 -48228736 - Alu SINE Alu -264 38 1 * 2401 198 38 9 chr15 37467018 37467543 -48228211 - L1MB8 LINE L1 -143 6035 5496 1085 158 0 6 chr15 37467548 37467712 -48228042 - AluJb SINE Alu -21 291 129 22 35 0 0 chr15 37467920 37467949 -48227805 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr15 37468188 37468223 -48227531 + AT_rich Low_complexity Low_complexity 1 35 0 2357 88 0 19 chr15 37469198 37469506 -48226248 - AluSx SINE Alu -10 302 1 23 0 0 0 chr15 37471874 37471897 -48223857 + AT_rich Low_complexity Low_complexity 1 23 0 2282 94 0 0 chr15 37472242 37472530 -48223224 - AluSx SINE Alu -8 304 17 2313 82 7 3 chr15 37473869 37474162 -48221592 - AluSx SINE Alu -18 294 1 1992 112 0 4 chr15 37475534 37475803 -48219951 - AluSg SINE Alu -7 303 36 2231 100 13 7 chr15 37475958 37476257 -48219497 - AluSg SINE Alu -4 306 6 2162 110 4 4 chr15 37476548 37476829 -48218925 + AluSx SINE Alu 1 281 -31 337 135 0 0 chr15 37476933 37477011 -48218743 + Alu SINE Alu 249 326 0 373 305 112 30 chr15 37477157 37477390 -48218364 - MIR SINE MIR -9 253 2 1990 135 7 14 chr15 37477628 37477925 -48217829 - AluSx SINE Alu -12 300 6 1403 144 0 30 chr15 37478273 37478551 -48217203 + AluJo SINE Alu 84 354 0 2166 134 0 0 chr15 37478658 37478957 -48216797 + AluSx SINE Alu 1 299 -13 1548 202 14 11 chr15 37479045 37479327 -48216427 + AluJb SINE Alu 1 283 -29 232 244 166 60 chr15 37479380 37479699 -48216055 - L1ME4a LINE L1 -12 6109 5757 2066 128 17 0 chr15 37479895 37480185 -48215569 + AluJb SINE Alu 1 295 -17 2179 97 0 17 chr15 37480413 37480711 -48215043 - AluSc SINE Alu -16 293 1 2148 127 3 0 chr15 37480711 37481003 -48214751 - AluSx SINE Alu -19 293 1 2432 67 0 10 chr15 37481168 37481466 -48214288 - AluY SINE Alu -14 297 3 249 303 131 33 chr15 37481544 37481666 -48214088 + L2 LINE L2 3134 3267 -5 466 322 137 11 chr15 37482011 37482281 -48213473 + L2 LINE L2 2521 2824 -490 6408 130 12 23 chr15 37483261 37483314 -48212440 - L1MA2 LINE L1 0 6304 6252 2348 76 10 20 chr15 37483314 37483618 -48212136 - AluY SINE Alu -10 301 1 6408 130 12 23 chr15 37483618 37484504 -48211250 - L1MA2 LINE L1 -52 6252 5376 2177 139 0 0 chr15 37484504 37484806 -48210948 - AluSx SINE Alu -10 302 1 6408 130 12 23 chr15 37484806 37484986 -48210768 - L1MA2 LINE L1 -928 5376 5195 2237 101 10 19 chr15 37484986 37485294 -48210460 - AluSx SINE Alu -7 305 1 2529 41 0 41 chr15 37485347 37485664 -48210090 - AluY SINE Alu -7 304 1 26 0 0 0 chr15 37485995 37486021 -48209733 + AT_rich Low_complexity Low_complexity 1 26 0 1802 78 9 0 chr15 37486074 37486305 -48209449 - AluY SINE Alu -7 304 72 2131 134 0 3 chr15 37486479 37486771 -48208983 + AluSx SINE Alu 1 291 -21 429 286 36 7 chr15 37487058 37487198 -48208556 + MIR SINE MIR 79 222 -40 2272 119 3 0 chr15 37488226 37488538 -48207216 + AluSq SINE Alu 1 313 0 290 217 0 0 chr15 37488564 37488610 -48207144 - AluJ/monomer SINE Alu -256 46 1 2194 121 6 10 chr15 37488648 37488961 -48206793 + AluSx SINE Alu 1 312 0 2247 75 0 41 chr15 37488963 37489302 -48206452 + AluY SINE Alu 1 327 0 2201 126 3 3 chr15 37489798 37490108 -48205646 + AluSx SINE Alu 1 310 -2 2043 139 0 0 chr15 37490299 37490614 -48205140 + AluSx SINE Alu 1 315 0 38 0 0 0 chr15 37490807 37490845 -48204909 + AT_rich Low_complexity Low_complexity 1 38 0 2024 141 20 0 chr15 37491050 37491348 -48204406 + AluSx SINE Alu 1 304 -8 2347 103 0 0 chr15 37491518 37491810 -48203944 - AluSx SINE Alu -15 297 6 1679 196 0 10 chr15 37491933 37492234 -48203520 - AluJo SINE Alu -1 311 14 1262 188 4 32 chr15 37492390 37492640 -48203114 - AluJo SINE Alu -69 243 1 21 0 0 0 chr15 37492642 37492663 -48203091 + AT_rich Low_complexity Low_complexity 1 21 0 1590 205 10 13 chr15 37493013 37493320 -48202434 + AluJo SINE Alu 3 308 -4 323 174 112 47 chr15 37493504 37493614 -48202140 + L1MC4 LINE L1 7528 7744 -298 430 107 0 80 chr15 37493621 37493696 -48202058 + AluJ/FRAM SINE Alu 232 300 -12 2277 75 7 4 chr15 37493721 37494002 -48201752 + AluY SINE Alu 1 311 0 262 0 0 0 chr15 37494002 37494031 -48201723 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 439 304 38 116 chr15 37494043 37494276 -48201478 + L2 LINE L2 2805 3055 -258 2251 102 0 0 chr15 37494276 37494560 -48201194 - AluSq SINE Alu -29 284 1 439 304 38 116 chr15 37494560 37494878 -48200876 + L2 LINE L2 3055 3313 0 688 300 0 17 chr15 37495325 37495505 -48200249 - MER5B DNA MER1_type -1 177 1 6664 107 25 11 chr15 37495634 37496590 -48199164 + LTR5 LTR ERVK 1 969 0 23 0 0 0 chr15 37497023 37497046 -48198708 + AT_rich Low_complexity Low_complexity 1 23 0 2285 94 13 0 chr15 37497106 37497404 -48198350 + AluSp SINE Alu 1 302 -11 2348 87 3 7 chr15 37497406 37497706 -48198048 + AluSp SINE Alu 3 301 -12 24 32 0 0 chr15 37498858 37498889 -48196865 + AT_rich Low_complexity Low_complexity 1 31 0 243 0 0 0 chr15 37498889 37498916 -48196838 + (CA)n Simple_repeat Simple_repeat 2 28 0 3593 189 20 14 chr15 37498933 37499343 -48196411 - MER82 DNA MER2_type 0 653 236 1421 151 49 0 chr15 37499343 37499568 -48196186 - MER46A DNA MER2_type 0 236 1 3593 189 20 14 chr15 37499568 37499806 -48195948 - MER82 DNA MER2_type -417 236 1 361 274 29 0 chr15 37500441 37500543 -48195211 - MIR SINE MIR -56 152 48 22 0 0 0 chr15 37500556 37500578 -48195176 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr15 37500721 37500744 -48195010 + AT_rich Low_complexity Low_complexity 1 23 0 2077 78 74 3 chr15 37501077 37501360 -48194394 + AluY SINE Alu 1 303 -8 557 96 0 0 chr15 37501761 37501834 -48193920 - AluSc SINE Alu -16 293 221 1209 62 0 7 chr15 37501834 37501980 -48193774 - AluSq/x SINE Alu -167 146 2 208 135 0 0 chr15 37502130 37502167 -48193587 + (TTTTTA)n Simple_repeat Simple_repeat 3 39 0 1601 273 119 18 chr15 37502234 37502800 -48192954 - L2 LINE L2 -385 2929 2421 2302 85 0 3 chr15 37502800 37503095 -48192659 + AluY SINE Alu 1 294 -17 1601 273 119 18 chr15 37503095 37503118 -48192636 - L2 LINE L2 -893 2421 2402 369 0 0 0 chr15 37503118 37503159 -48192595 + (TA)n Simple_repeat Simple_repeat 2 42 0 1601 273 119 18 chr15 37503159 37503183 -48192571 - L2 LINE L2 -912 2402 2253 572 222 9 0 chr15 37503185 37503293 -48192461 + MER3 DNA MER1_type 1 109 -100 1369 138 9 18 chr15 37503298 37503523 -48192231 + AluJb SINE Alu 64 286 -26 456 19 0 0 chr15 37503525 37503578 -48192176 + (TG)n Simple_repeat Simple_repeat 2 54 0 482 151 65 0 chr15 37503578 37503671 -48192083 + MER3 DNA MER1_type 110 208 -1 295 216 0 0 chr15 37503627 37503678 -48192076 - MER3 DNA MER1_type -117 92 42 * 1072 257 143 0 chr15 37503679 37504037 -48191717 - L2 LINE L2 -1063 2251 1843 2026 161 46 23 chr15 37504042 37504228 -48191526 + L1MB8 LINE L1 5512 5692 -492 2231 117 0 0 chr15 37504228 37504527 -48191227 + AluSg SINE Alu 1 299 -11 2026 161 46 23 chr15 37504527 37504732 -48191022 + L1MB8 LINE L1 5692 5912 -272 1052 174 25 25 chr15 37504732 37504928 -48190826 + AluJo SINE Alu 106 301 -11 1274 137 11 99 chr15 37504928 37505077 -48190677 + L1MB8 LINE L1 5934 6052 -126 1844 127 14 14 chr15 37505077 37505391 -48190363 + AluSx SINE Alu 6 312 0 1274 137 11 99 chr15 37505391 37505503 -48190251 + L1MB8 LINE L1 6052 6172 -6 2509 260 157 36 chr15 37505547 37506261 -48189493 - L2 LINE L2 -1755 1559 933 342 0 0 0 chr15 37506261 37506299 -48189455 + (TG)n Simple_repeat Simple_repeat 2 39 0 2509 260 157 36 chr15 37506299 37506755 -48188999 - L2 LINE L2 -2381 933 247 219 229 73 42 chr15 37506759 37506808 -48188946 - L2 LINE L2 -1074 2240 2194 2100 55 48 4 chr15 37506808 37507105 -48188649 + AluY SINE Alu 1 309 0 219 229 73 42 chr15 37507105 37507150 -48188604 - L2 LINE L2 -1120 2194 2142 297 0 0 0 chr15 37508656 37508689 -48187065 + (TA)n Simple_repeat Simple_repeat 1 33 0 279 0 0 0 chr15 37508688 37508719 -48187035 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 3569 191 20 14 chr15 37508736 37509146 -48186608 - MER82 DNA MER2_type 0 653 236 1400 156 49 0 chr15 37509146 37509371 -48186383 - MER46A DNA MER2_type 0 236 1 3569 191 20 14 chr15 37509371 37509609 -48186145 - MER82 DNA MER2_type -417 236 1 207 323 0 0 chr15 37510842 37510907 -48184847 + T-rich Low_complexity Low_complexity 1 65 0 484 137 0 0 chr15 37511173 37511246 -48184508 - AluSc SINE Alu -16 293 221 1202 68 0 7 chr15 37511246 37511393 -48184361 - AluSq/x SINE Alu -167 146 1 2452 214 82 40 chr15 37511406 37511592 -48184162 + L1MC4 LINE L1 6837 7014 -1028 1998 82 45 4 chr15 37511592 37511859 -48183895 + AluY SINE Alu 1 278 -33 2452 214 82 40 chr15 37511859 37512405 -48183349 + L1MC4 LINE L1 7014 7600 -442 438 169 0 0 chr15 37512408 37512497 -48183257 + GA-rich Low_complexity Low_complexity 4 92 0 935 263 65 54 chr15 37512498 37512815 -48182939 + L1MC4 LINE L1 7589 7914 -128 2337 106 3 0 chr15 37512815 37513118 -48182636 + AluSp SINE Alu 1 304 -9 935 263 65 54 chr15 37513118 37513248 -48182506 + L1MC4 LINE L1 7914 8041 -1 27 0 0 0 chr15 37513276 37513303 -48182451 + AT_rich Low_complexity Low_complexity 1 27 0 239 137 59 39 chr15 37513319 37513370 -48182384 + L2 LINE L2 3262 3313 0 1861 134 3 30 chr15 37513438 37513781 -48181973 + AluSx SINE Alu 1 312 0 2306 104 7 0 chr15 37514376 37514674 -48181080 + AluSx SINE Alu 1 300 -12 1617 150 51 15 chr15 37515652 37515954 -48179800 - AluJo SINE Alu 0 312 1 1461 90 76 9 chr15 37516006 37516217 -48179537 + AluSp SINE Alu 85 309 -4 2105 127 7 13 chr15 37517071 37517378 -48178376 - AluSx SINE Alu -7 305 1 21 71 0 0 chr15 37517705 37517747 -48178007 + AT_rich Low_complexity Low_complexity 1 42 0 41 0 0 0 chr15 37518373 37518414 -48177340 + AT_rich Low_complexity Low_complexity 1 41 0 265 219 14 14 chr15 37518462 37518535 -48177219 - Charlie7 DNA MER1_type -2503 109 37 252 167 0 0 chr15 37518675 37518717 -48177037 + MER5B DNA MER1_type 135 176 -2 1348 89 0 0 chr15 37518885 37519053 -48176701 - AluSg/x SINE Alu -13 297 130 243 0 0 0 chr15 37519053 37519080 -48176674 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2015 135 3 0 chr15 37519080 37519362 -48176392 - AluSx SINE Alu -29 283 1 732 211 0 8 chr15 37519699 37519832 -48175922 + AluJo SINE Alu 2 133 -169 271 105 0 0 chr15 37519866 37519904 -48175850 - Alu SINE Alu -32 269 232 1708 182 4 0 chr15 37519904 37520179 -48175575 - AluJb SINE Alu -36 276 1 984 183 12 0 chr15 37520200 37520364 -48175390 + AluJo SINE Alu 132 297 -15 1927 121 48 7 chr15 37520405 37520694 -48175060 + AluSq SINE Alu 1 301 -12 1642 198 11 0 chr15 37520790 37521068 -48174686 + AluJo SINE Alu 1 281 -31 310 252 77 97 chr15 37521085 37521240 -48174514 - L2 LINE L2 -1 3312 3161 1388 249 79 67 chr15 37521240 37521599 -48174155 - L1ME3 LINE L1 -300 5871 5518 2394 74 13 0 chr15 37521599 37521898 -48173856 - AluSx SINE Alu -5 307 5 1388 249 79 67 chr15 37521898 37522381 -48173373 - L1ME3 LINE L1 -653 5518 5014 977 186 13 0 chr15 37522381 37522537 -48173217 - FAM SINE Alu -17 158 1 1388 249 79 67 chr15 37522537 37522672 -48173082 - L1ME3 LINE L1 -1157 5014 4882 966 192 29 0 chr15 37522775 37522947 -48172807 + FRAM SINE Alu 1 176 0 278 240 306 8 chr15 37523240 37523361 -48172393 - L2 LINE L2 -3 3310 3154 2327 95 10 0 chr15 37523368 37523672 -48172082 + AluSc SINE Alu 1 307 -2 1993 140 10 0 chr15 37523698 37524005 -48171749 + AluJb SINE Alu 1 310 -2 4374 179 67 47 chr15 37524119 37524405 -48171349 + L1MD1 LINE L1 4872 5151 -1091 753 154 0 84 chr15 37524405 37524548 -48171206 + FLAM_C SINE Alu 3 133 0 4374 179 67 47 chr15 37524548 37524675 -48171079 + L1MD1 LINE L1 5151 5274 -968 1805 167 30 0 chr15 37524675 37524975 -48170779 + AluJo SINE Alu 1 309 -3 4374 179 67 47 chr15 37524975 37525113 -48170641 + L1MD1 LINE L1 5274 5408 -834 2125 122 3 13 chr15 37525113 37525424 -48170330 + AluSq SINE Alu 1 308 -5 4374 179 67 47 chr15 37525424 37525618 -48170136 + L1MD1 LINE L1 5408 5597 -645 824 162 0 0 chr15 37525618 37525769 -48169985 + FLAM_A SINE Alu 4 154 0 4374 179 67 47 chr15 37525769 37525853 -48169901 + L1MD1 LINE L1 5597 5678 -564 2039 133 0 3 chr15 37525853 37526138 -48169616 - AluSx SINE Alu -27 285 2 4374 179 67 47 chr15 37526138 37526462 -48169292 + L1MD1 LINE L1 5678 5994 -248 1825 171 7 0 chr15 37526462 37526774 -48168980 - AluJb SINE Alu 0 314 1 4374 179 67 47 chr15 37526774 37526886 -48168868 + L1MD1 LINE L1 5994 6102 -140 2177 126 0 3 chr15 37526886 37527195 -48168559 - AluSg SINE Alu 0 310 3 4374 179 67 47 chr15 37527195 37527268 -48168486 + L1MD1 LINE L1 6102 6242 0 1609 268 81 8 chr15 37527520 37527991 -48167763 + LTR33 LTR ERVL 9 513 -8 1475 268 81 49 chr15 37528163 37528692 -48167062 + MER77 LTR ERV1 54 599 -6 460 219 46 46 chr15 37529231 37529322 -48166432 - L2 LINE L2 -4 3309 3216 1769 139 12 0 chr15 37529322 37529580 -48166174 + AluSx SINE Alu 47 307 -5 460 219 46 46 chr15 37529580 37529639 -48166115 - L2 LINE L2 -96 3217 3159 1976 162 54 8 chr15 37529780 37530143 -48165611 + L1MB2 LINE L1 5648 6032 -139 1735 176 7 7 chr15 37530143 37530421 -48165333 - AluJo SINE Alu -33 279 2 1976 162 54 8 chr15 37530421 37530446 -48165308 + L1MB2 LINE L1 6032 6054 -117 2468 84 0 0 chr15 37530448 37530756 -48164998 + AluY SINE Alu 1 308 -3 2611 153 38 25 chr15 37530797 37531274 -48164480 + L1MC1 LINE L1 5814 6296 -37 240 167 0 0 chr15 37531284 37531332 -48164422 + GA-rich Low_complexity Low_complexity 4 51 0 396 298 152 47 chr15 37531364 37531622 -48164132 - L2 LINE L2 -249 3064 2782 2456 48 0 29 chr15 37531689 37532001 -48163753 + AluY SINE Alu 1 303 -8 202 359 0 0 chr15 37532100 37532164 -48163590 - L2 LINE L2 -8 3264 3201 870 195 0 0 chr15 37532841 37533000 -48162754 + FRAM SINE Alu 9 167 -9 1006 199 80 12 chr15 37533003 37533254 -48162500 + AluSx SINE Alu 6 273 -39 475 428 0 0 chr15 37533303 37533483 -48162271 + G-rich Low_complexity Low_complexity 1 180 0 1278 113 16 0 chr15 37533584 37533770 -48161984 - AluY SINE Alu -122 189 1 31 44 0 0 chr15 37534013 37534058 -48161696 + AT_rich Low_complexity Low_complexity 1 45 0 674 247 0 27 chr15 37534572 37534718 -48161036 - FLAM_A SINE Alu 0 142 1 2031 140 10 3 chr15 37534729 37535037 -48160717 - AluJb SINE Alu 0 312 3 2017 63 0 73 chr15 37535451 37535738 -48160016 - AluY SINE Alu -45 266 1 1888 164 3 0 chr15 37535743 37536030 -48159724 - AluSx SINE Alu -24 288 1 2178 120 0 10 chr15 37536072 37536380 -48159374 - AluSc SINE Alu -4 305 1 633 188 87 29 chr15 37536978 37537116 -48158638 + MER58C DNA MER1_type 62 207 -8 255 248 108 6 chr15 37537295 37537452 -48158302 - L1ME4a LINE L1 0 6121 5949 2035 75 86 0 chr15 37537647 37537915 -48157839 + AluSq SINE Alu 1 291 -22 338 180 60 30 chr15 37538164 37538264 -48157490 - 7SLRNA srpRNA srpRNA 0 320 238 2209 125 0 0 chr15 37538291 37538588 -48157166 + AluSx SINE Alu 1 297 -15 1183 143 0 6 chr15 37538711 37538879 -48156875 - AluJb SINE Alu -13 299 133 21 57 0 0 chr15 37539519 37539554 -48156200 + AT_rich Low_complexity Low_complexity 1 35 0 2509 42 0 39 chr15 37539968 37540276 -48155478 - AluY SINE Alu -15 296 1 2235 118 0 0 chr15 37540807 37541103 -48154651 + AluSq SINE Alu 2 297 -16 2007 142 0 32 chr15 37541139 37541455 -48154299 + AluSg SINE Alu 3 308 -2 208 191 0 43 chr15 37541587 37541634 -48154120 + MIR SINE MIR 102 146 -62 1356 125 88 78 chr15 37541925 37542036 -48153718 - MER33 DNA MER1_type -2262 323 215 1776 190 0 3 chr15 37542036 37542336 -48153418 - AluJb SINE Alu -12 300 2 1356 125 88 78 chr15 37542336 37542544 -48153210 - MER33 DNA MER1_type -2370 215 1 2084 125 7 0 chr15 37542739 37543035 -48152719 + AluSx SINE Alu 1 298 -14 242 282 183 34 chr15 37543365 37543688 -48152066 + L2 LINE L2 1710 2080 -1234 1844 127 14 14 chr15 37544214 37544227 -48151527 - AluSx SINE Alu 0 312 300 196 42 0 0 chr15 37544227 37544251 -48151503 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1844 127 14 14 chr15 37544251 37544528 -48151226 - AluSx SINE Alu -11 301 6 816 124 0 48 chr15 37544532 37544677 -48151077 - L1MB8 LINE L1 -107 6071 5934 1052 174 25 25 chr15 37544677 37544873 -48150881 - AluJo SINE Alu -11 301 106 2026 161 46 23 chr15 37544873 37545078 -48150676 - L1MB8 LINE L1 -272 5912 5713 2231 117 0 0 chr15 37545078 37545377 -48150377 - AluSg SINE Alu -11 299 1 2026 161 46 23 chr15 37545377 37545563 -48150191 - L1MB8 LINE L1 -471 5713 5512 1072 257 143 0 chr15 37545568 37545926 -48149828 + L2 LINE L2 1843 2251 -1063 454 161 65 0 chr15 37545934 37546027 -48149727 - MER3 DNA MER1_type -1 208 110 546 16 0 0 chr15 37546027 37546090 -48149664 + (CA)n Simple_repeat Simple_repeat 2 64 0 1369 138 9 18 chr15 37546092 37546317 -48149437 - AluJb SINE Alu -26 286 64 572 222 9 0 chr15 37546322 37546430 -48149324 - MER3 DNA MER1_type -100 109 1 1601 273 119 18 chr15 37546432 37546456 -48149298 + L2 LINE L2 2253 2273 -1041 441 0 0 0 chr15 37546456 37546505 -48149249 + (TA)n Simple_repeat Simple_repeat 1 49 0 1601 273 119 18 chr15 37546505 37546528 -48149226 + L2 LINE L2 2273 2292 -1022 2293 85 0 3 chr15 37546528 37546822 -48148932 - AluY SINE Alu -18 293 1 1601 273 119 18 chr15 37546822 37547388 -48148366 + L2 LINE L2 2292 2929 -385 208 135 0 0 chr15 37547455 37547492 -48148262 + (TAAAAA)n Simple_repeat Simple_repeat 3 39 0 2001 129 3 39 chr15 37547642 37547775 -48147979 + AluJb SINE Alu 2 138 -174 2377 90 3 6 chr15 37547775 37548087 -48147667 + AluSp SINE Alu 3 313 0 2001 129 3 39 chr15 37548087 37548263 -48147491 + AluJb SINE Alu 138 300 -12 2341 75 0 3 chr15 37548369 37548664 -48147090 - AluY SINE Alu -17 294 1 25 0 0 50 chr15 37548676 37548697 -48147057 + AT_rich Low_complexity Low_complexity 1 21 -17 2114 136 0 7 chr15 37548697 37548992 -48146762 - AluSx SINE Alu -19 293 1 25 0 0 50 chr15 37548992 37549010 -48146744 + AT_rich Low_complexity Low_complexity 21 38 0 363 257 0 0 chr15 37549317 37549391 -48146363 - MER5C DNA MER1_type -250 74 1 2281 91 3 3 chr15 37549965 37550263 -48145491 - AluY SINE Alu -13 298 1 346 40 40 0 chr15 37550295 37550345 -48145409 - MADE1 DNA Mariner 0 80 29 821 117 0 0 chr15 37550425 37550536 -48145218 + AluSq/x SINE Alu 1 111 -202 294 73 0 0 chr15 37550554 37550595 -48145159 + (A)n Simple_repeat Simple_repeat 1 41 0 2074 138 0 0 chr15 37550597 37550893 -48144861 + AluSq SINE Alu 1 296 -17 303 289 9 70 chr15 37550912 37551026 -48144728 + L1ME3A LINE L1 5955 6061 -109 511 75 11 85 chr15 37551741 37551757 -48143997 - L1MC2 LINE L1 0 6344 6328 1870 131 32 7 chr15 37551757 37552040 -48143714 + AluSx SINE Alu 1 290 -22 511 75 11 85 chr15 37552040 37552117 -48143637 - L1MC2 LINE L1 -16 6328 6258 944 183 10 45 chr15 37552144 37552346 -48143408 + MER58A DNA MER1_type 30 224 0 231 36 0 0 chr15 37552564 37552592 -48143162 + (T)n Simple_repeat Simple_repeat 1 28 0 1756 177 0 46 chr15 37552793 37553120 -48142634 + AluJo SINE Alu 1 312 0 1839 149 7 10 chr15 37553396 37553684 -48142070 - AluJb SINE Alu -25 287 1 1268 163 40 83 chr15 37553797 37554074 -48141680 - AluJb SINE Alu -45 267 3 1897 161 3 3 chr15 37554507 37554817 -48140937 + AluSq SINE Alu 1 310 -3 254 247 153 0 chr15 37554879 37554964 -48140790 - MIR SINE MIR -77 185 88 2364 95 0 0 chr15 37555802 37556106 -48139648 - AluSg1 SINE Alu -5 304 1 2150 113 0 7 chr15 37556378 37556670 -48139084 + AluSq SINE Alu 5 294 -19 325 250 60 0 chr15 37556811 37556895 -48138859 - L2 LINE L2 -661 2653 2565 274 306 7 69 chr15 37557266 37557302 -48138452 + MIR SINE MIR 88 125 -137 2330 76 13 3 chr15 37557302 37557603 -48138151 - AluSp SINE Alu -9 304 1 274 306 7 69 chr15 37557603 37557710 -48138044 + MIR SINE MIR 125 222 -40 1655 166 13 45 chr15 37558531 37558664 -48137090 + AluJb SINE Alu 1 137 -175 1530 127 193 8 chr15 37558664 37558923 -48136831 + AluSg1 SINE Alu 1 307 -2 1655 166 13 45 chr15 37558923 37559102 -48136652 + AluJb SINE Alu 137 303 -9 472 167 0 0 chr15 37559867 37559945 -48135809 + FLAM_C SINE Alu 65 142 -1 21 0 0 0 chr15 37560079 37560100 -48135654 + AT_rich Low_complexity Low_complexity 1 21 0 924 143 0 0 chr15 37560101 37560234 -48135520 - FLAM_C SINE Alu 0 133 1 835 163 0 8 chr15 37560857 37560986 -48134768 - FLAM_C SINE Alu -5 128 1 1822 96 12 8 chr15 37561617 37561866 -48133888 + AluSx SINE Alu 52 301 -11 719 153 29 0 chr15 37562383 37562520 -48133234 - Charlie1 DNA MER1_type -1 2760 2620 * 924 139 64 0 chr15 37562504 37562676 -48133078 - Charlie1 DNA MER1_type -2522 239 57 384 348 118 45 chr15 37562945 37563215 -48132539 + L2 LINE L2 2912 3210 -62 2492 71 0 3 chr15 37563215 37563525 -48132229 - AluSq SINE Alu -4 309 1 384 348 118 45 chr15 37563525 37563567 -48132187 + L2 LINE L2 3210 3247 -25 723 150 7 116 chr15 37564426 37564573 -48131181 - FLAM_A SINE Alu -1 132 2 739 181 0 0 chr15 37566026 37566142 -48129612 + AluJo/FLAM SINE Alu 1 116 -186 1037 91 0 0 chr15 37566143 37566275 -48129479 + AluSg/x SINE Alu 170 301 -9 239 322 43 9 chr15 37566278 37566393 -48129361 + L1MC4 LINE L1 7763 7881 -161 1089 288 44 31 chr15 37566526 37566981 -48128773 + L1MEc LINE L1 173 633 -5763 1900 149 7 3 chr15 37566988 37567292 -48128462 + AluJo SINE Alu 3 307 0 23 54 0 0 chr15 37567294 37567331 -48128423 + AT_rich Low_complexity Low_complexity 1 37 0 1415 174 38 55 chr15 37567331 37567624 -48128130 + AluJo SINE Alu 6 293 -19 1078 259 87 82 chr15 37567638 37568398 -48127356 + L1MEc LINE L1 1379 2145 -4251 1908 113 0 0 chr15 37568398 37568654 -48127100 + AluSq SINE Alu 39 294 -19 1078 259 87 82 chr15 37568654 37568674 -48127080 + L1MEc LINE L1 2145 2163 -4233 325 250 60 0 chr15 37568795 37568879 -48126875 - L2 LINE L2 -661 2653 2565 274 306 7 69 chr15 37569250 37569286 -48126468 + MIR SINE MIR 88 125 -137 2317 80 13 3 chr15 37569286 37569587 -48126167 - AluSp SINE Alu -9 304 1 274 306 7 69 chr15 37569587 37569694 -48126060 + MIR SINE MIR 125 222 -40 1626 166 13 45 chr15 37570515 37570648 -48125106 + AluJb SINE Alu 1 137 -175 1547 127 192 8 chr15 37570648 37570908 -48124846 + AluSg1 SINE Alu 1 308 -1 1626 166 13 45 chr15 37570908 37571087 -48124667 + AluJb SINE Alu 137 303 -9 472 167 0 0 chr15 37571852 37571930 -48123824 + FLAM_A SINE Alu 64 141 -1 21 0 0 0 chr15 37572064 37572085 -48123669 + AT_rich Low_complexity Low_complexity 1 21 0 904 150 0 0 chr15 37572086 37572219 -48123535 - FLAM_C SINE Alu 0 133 1 845 161 0 8 chr15 37572842 37572972 -48122782 - FLAM_C SINE Alu -4 129 1 1822 96 12 8 chr15 37573601 37573850 -48121904 + AluSx SINE Alu 52 301 -11 719 153 29 0 chr15 37574367 37574504 -48121250 - Charlie1 DNA MER1_type -1 2760 2620 * 924 139 64 0 chr15 37574488 37574660 -48121094 - Charlie1 DNA MER1_type -2522 239 57 384 348 118 45 chr15 37574929 37575199 -48120555 + L2 LINE L2 2912 3210 -62 2492 71 0 3 chr15 37575199 37575509 -48120245 - AluSq SINE Alu -4 309 1 384 348 118 45 chr15 37575509 37575551 -48120203 + L2 LINE L2 3210 3247 -25 723 150 7 116 chr15 37576409 37576556 -48119198 - FLAM_A SINE Alu -1 132 2 30 0 0 0 chr15 37578630 37578660 -48117094 + GC_rich Low_complexity Low_complexity 1 30 0 218 317 125 10 chr15 37579531 37579635 -48116119 - L2 LINE L2 0 3313 3198 1428 68 0 0 chr15 37579694 37579871 -48115883 - AluSg/x SINE Alu -2 308 132 2494 53 3 0 chr15 37579871 37580172 -48115582 - AluY SINE Alu -9 302 1 1827 97 0 31 chr15 37580255 37580514 -48115240 - AluSg SINE Alu -4 306 56 4180 168 56 64 chr15 37580544 37581506 -48114248 - LTR13 LTR ERVK 0 954 1 2192 114 3 3 chr15 37581753 37582052 -48113702 + AluSp SINE Alu 1 299 -14 22 0 0 0 chr15 37582573 37582595 -48113159 + AT_rich Low_complexity Low_complexity 1 22 0 1638 185 43 0 chr15 37582595 37582876 -48112878 - AluJb SINE Alu -19 293 1 935 200 29 0 chr15 37583037 37583207 -48112547 - FAM SINE Alu 0 175 1 894 207 13 0 chr15 37583289 37583439 -48112315 + FRAM SINE Alu 1 152 -14 1832 263 105 60 chr15 37583478 37584032 -48111722 - HAL1 LINE L1 -210 2297 1770 1486 196 13 36 chr15 37584032 37584333 -48111421 - AluJo SINE Alu -18 294 1 1832 263 105 60 chr15 37584333 37584345 -48111409 - HAL1 LINE L1 -737 1770 1760 2244 120 0 0 chr15 37584345 37584654 -48111100 - AluSc SINE Alu 0 309 1 2138 130 0 0 chr15 37584654 37584946 -48110808 - AluSg1 SINE Alu -17 292 1 1832 263 105 60 chr15 37584946 37585386 -48110368 - HAL1 LINE L1 -746 1761 1243 2341 110 3 0 chr15 37585887 37586197 -48109557 - AluSp SINE Alu -2 311 1 669 256 128 0 chr15 37587221 37587385 -48108369 + MER5A DNA MER1_type 4 188 -1 450 0 0 0 chr15 37587549 37587599 -48108155 + (TG)n Simple_repeat Simple_repeat 2 51 0 1483 164 109 4 chr15 37587767 37588055 -48107699 - AluJo SINE Alu 0 315 1 284 173 0 0 chr15 37588140 37588192 -48107562 + HsTC2 DNA Tc2 1845 1896 -2 333 336 33 16 chr15 37588287 37588409 -48107345 - MER5A DNA MER1_type 0 189 66 1208 180 19 0 chr15 37588411 37588622 -48107132 - AluJo SINE Alu -13 299 85 243 195 58 126 chr15 37588935 37589022 -48106732 + MIR SINE MIR 60 140 -122 1423 162 5 0 chr15 37589036 37589252 -48106502 + U3 snRNA snRNA 1 217 0 25 51 0 0 chr15 37589353 37589392 -48106362 + AT_rich Low_complexity Low_complexity 1 39 0 2133 108 7 17 chr15 37589557 37589718 -48106036 - AluSq SINE Alu -19 294 136 2069 117 7 36 chr15 37589718 37590027 -48105727 - AluSq SINE Alu -13 300 1 2133 108 7 17 chr15 37590027 37590162 -48105592 - AluSq SINE Alu -177 136 1 316 279 96 0 chr15 37590868 37590972 -48104782 + MIR SINE MIR 116 229 -33 182 200 0 0 chr15 37591018 37591058 -48104696 + L2 LINE L2 3274 3313 0 403 311 50 6 chr15 37591353 37591514 -48104240 - Charlie8 DNA MER1_type -2179 238 71 1483 158 39 49 chr15 37591524 37591808 -48103946 + AluJo SINE Alu 1 281 -31 1740 146 0 68 chr15 37592069 37592270 -48103484 - AluJo SINE Alu -13 299 86 2077 147 0 0 chr15 37592270 37592570 -48103184 + AluSx SINE Alu 1 300 -12 2000 137 3 19 chr15 37592570 37592885 -48102869 + AluSx SINE Alu 1 310 -2 1740 146 0 68 chr15 37592885 37593003 -48102751 - AluJo SINE Alu -224 88 1 184 347 40 0 chr15 37593140 37593215 -48102539 - L2 LINE L2 -299 2973 2896 333 286 41 20 chr15 37593233 37593331 -48102423 + MIR SINE MIR 8 107 -155 2133 108 0 20 chr15 37593639 37593945 -48101809 + AluSx SINE Alu 1 300 -12 2354 85 3 13 chr15 37594241 37594548 -48101206 - AluSp SINE Alu -9 304 1 343 259 31 37 chr15 37594750 37594912 -48100842 - L2 LINE L2 -871 2443 2283 686 280 31 36 chr15 37594914 37595139 -48100615 - MIR SINE MIR 0 262 39 256 341 47 0 chr15 37595178 37595263 -48100491 - L2 LINE L2 -38 3234 3146 233 317 80 64 chr15 37595294 37595669 -48100085 - L2 LINE L2 -1140 2174 1794 751 171 0 23 chr15 37595879 37596008 -48099746 - FLAM_C SINE Alu -5 128 3 496 232 17 90 chr15 37596506 37596594 -48099160 - MIR SINE MIR -59 203 133 1873 147 6 13 chr15 37596594 37596906 -48098848 + AluJb SINE Alu 1 310 -2 496 232 17 90 chr15 37596906 37596994 -48098760 - MIR SINE MIR -129 133 40 1059 215 5 9 chr15 37597195 37597371 -48098383 - AluJb SINE Alu -15 297 121 198 0 0 0 chr15 37597371 37597393 -48098361 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1059 215 5 9 chr15 37597393 37597430 -48098324 - AluJb SINE Alu -191 121 85 723 77 0 0 chr15 37597430 37597521 -48098233 - AluSg/x SINE Alu -62 248 158 347 113 0 0 chr15 37597522 37597575 -48098179 - AluSg/x SINE Alu -113 187 135 1990 99 35 0 chr15 37597575 37597859 -48097895 - AluSx SINE Alu -18 294 1 29 28 0 0 chr15 37597859 37597895 -48097859 + AT_rich Low_complexity Low_complexity 1 36 0 2288 85 7 3 chr15 37598352 37598647 -48097107 + AluSp SINE Alu 1 296 -17 784 154 64 19 chr15 37598740 37598896 -48096858 + FRAM SINE Alu 1 163 -3 216 0 0 0 chr15 37598902 37598926 -48096828 + (CA)n Simple_repeat Simple_repeat 2 25 0 470 167 11 11 chr15 37598943 37599033 -48096721 + FRAM SINE Alu 74 163 -13 264 59 0 0 chr15 37599039 37599073 -48096681 + (CA)n Simple_repeat Simple_repeat 2 35 0 285 241 60 0 chr15 37599903 37599986 -48095768 + GA-rich Low_complexity Low_complexity 3 90 0 192 77 0 0 chr15 37600155 37600181 -48095573 + (CGG)n Simple_repeat Simple_repeat 2 27 0 22 70 0 0 chr15 37600256 37600299 -48095455 + GC_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr15 37602543 37602570 -48093184 + AT_rich Low_complexity Low_complexity 1 27 0 27 49 0 0 chr15 37602933 37602974 -48092780 + AT_rich Low_complexity Low_complexity 1 41 0 656 195 0 0 chr15 37602975 37603093 -48092661 - FLAM_C SINE Alu -15 118 1 598 243 70 84 chr15 37603721 37604005 -48091749 + MER102a DNA MER1_type 33 312 -18 2354 88 0 0 chr15 37604527 37604821 -48090933 - AluSx SINE Alu -18 294 1 776 176 0 0 chr15 37604875 37604994 -48090760 - FLAM_C SINE Alu -24 119 1 2347 80 0 10 chr15 37605814 37606114 -48089640 + AluSq SINE Alu 1 297 -16 1268 179 5 5 chr15 37606638 37606861 -48088893 - AluJb SINE Alu -4 308 86 363 211 0 0 chr15 37607291 37607362 -48088392 + Tigger5 DNA MER2_type 18 88 -2235 23 0 0 0 chr15 37608734 37608757 -48086997 + AT_rich Low_complexity Low_complexity 1 23 0 722 199 0 15 chr15 37609014 37609150 -48086604 + AluJo SINE Alu 1 134 -178 1926 146 13 0 chr15 37609287 37609588 -48086166 - AluSx SINE Alu -7 305 1 198 336 84 0 chr15 37609641 37609748 -48086006 + L2 LINE L2 3186 3301 -12 22 35 0 0 chr15 37610139 37610168 -48085586 + AT_rich Low_complexity Low_complexity 1 29 0 2187 72 0 38 chr15 37610173 37610494 -48085260 - AluY SINE Alu 0 310 1 450 266 101 45 chr15 37612035 37612244 -48083510 - MIR SINE MIR -1 261 45 560 135 0 87 chr15 37612768 37612872 -48082882 - AluJb SINE Alu -194 118 24 322 244 131 48 chr15 37612974 37613203 -48082551 - L1MC4 LINE L1 0 8042 7795 1865 168 30 0 chr15 37613975 37614308 -48081446 - MER2 DNA MER2_type 0 344 2 1414 142 0 22 chr15 37614984 37615216 -48080538 - AluJb SINE Alu 0 312 86 503 257 170 14 chr15 37615284 37615502 -48080252 + MIR SINE MIR 10 261 -1 21 0 0 0 chr15 37615785 37615806 -48079948 + AT_rich Low_complexity Low_complexity 1 21 0 323 310 77 19 chr15 37615806 37615961 -48079793 + L1M4 LINE L1 4033 4196 -1950 484 136 262 0 chr15 37616072 37616175 -48079579 + MER2 DNA MER2_type 7 136 -209 2301 107 0 3 chr15 37616993 37617293 -48078461 - AluSx SINE Alu -13 299 1 1799 163 0 29 chr15 37618076 37618382 -48077372 - AluJb SINE Alu -15 297 1 394 249 94 42 chr15 37618382 37618595 -48077159 + MER2 DNA MER2_type 121 344 -1 1842 180 154 48 chr15 37618596 37619095 -48076659 - MLT2B3 LTR ERVL -2 552 1 461 238 164 0 chr15 37619298 37619420 -48076334 - MER58A DNA MER1_type 0 143 2 798 154 89 134 chr15 37619577 37619735 -48076019 - MER46A DNA MER2_type -2495 236 91 2021 125 16 0 chr15 37619735 37620039 -48075715 - AluSx SINE Alu -3 309 1 798 154 89 134 chr15 37620039 37620127 -48075627 - MER46A DNA MER2_type -2640 91 1 376 254 127 36 chr15 37620174 37620339 -48075415 - MER5A DNA MER1_type 0 189 10 868 130 0 43 chr15 37620506 37620644 -48075110 - FLAM_C SINE Alu 0 133 2 692 164 30 45 chr15 37621125 37621259 -48074495 - FLAM_C SINE Alu -1 132 1 23 0 0 0 chr15 37621261 37621284 -48074470 + AT_rich Low_complexity Low_complexity 1 23 0 593 187 52 19 chr15 37621293 37621448 -48074306 - L1ME1 LINE L1 -5 6161 6002 * 980 176 90 4 chr15 37621441 37621686 -48074068 - L1MDa LINE L1 -3205 3335 3070 603 256 143 19 chr15 37621708 37622079 -48073675 - L1MDa LINE L1 -3529 3011 2595 1317 195 10 55 chr15 37622104 37622230 -48073524 + AluJo SINE Alu 16 146 -166 2239 118 3 13 chr15 37622230 37622544 -48073210 + AluSx SINE Alu 1 311 -1 1317 195 10 55 chr15 37622544 37622709 -48073045 + AluJo SINE Alu 146 294 -18 237 229 0 0 chr15 37622755 37622803 -48072951 + CT-rich Low_complexity Low_complexity 2 49 0 318 50 0 0 chr15 37622803 37622843 -48072911 + (TCCCC)n Simple_repeat Simple_repeat 5 44 0 801 231 13 6 chr15 37622846 37623002 -48072752 - FAM SINE Alu -18 157 1 1167 255 77 63 chr15 37623004 37623128 -48072626 - L1MDa LINE L1 -4126 2595 2474 1777 131 0 11 chr15 37623128 37623402 -48072352 - AluSx SINE Alu -3 309 39 1167 255 77 63 chr15 37623402 37624147 -48071607 - L1MDa LINE L1 -4247 2474 1669 27 0 0 0 chr15 37624149 37624176 -48071578 + AT_rich Low_complexity Low_complexity 1 27 0 1443 178 38 55 chr15 37624176 37624469 -48071285 - AluJo SINE Alu -19 293 6 23 54 0 0 chr15 37624469 37624506 -48071248 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr15 37624508 37624528 -48071226 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1909 149 7 3 chr15 37624530 37624812 -48070942 - AluJo SINE Alu -27 285 3 941 292 44 31 chr15 37624819 37625274 -48070480 - L1MDa LINE L1 -5763 958 498 1040 91 0 0 chr15 37625525 37625657 -48070097 - AluSg/x SINE Alu -9 303 172 721 172 0 0 chr15 37625658 37625774 -48069980 - AluJo/FLAM SINE Alu -186 116 1 2060 104 0 61 chr15 37625993 37626320 -48069434 - AluSq SINE Alu -6 307 1 2110 141 0 3 chr15 37626691 37626997 -48068757 + AluJb SINE Alu 1 305 -7 513 196 60 60 chr15 37627005 37627138 -48068616 + MER63A DNA MER1_type 60 192 -18 1396 149 20 143 chr15 37627172 37627351 -48068403 - AluJo SINE Alu -1 301 102 2147 124 0 6 chr15 37627351 37627666 -48068088 - AluSq SINE Alu 0 313 1 1396 149 20 143 chr15 37627666 37627685 -48068069 - AluJo SINE Alu -200 102 82 2111 133 0 0 chr15 37627685 37627978 -48067776 - AluSq SINE Alu -20 293 1 1396 149 20 143 chr15 37627978 37628121 -48067633 - AluJo SINE Alu -220 82 1 2241 85 0 3 chr15 37629023 37629354 -48066400 + AluY SINE Alu 1 330 0 295 192 100 108 chr15 37629559 37629679 -48066075 - MIR SINE MIR -96 166 48 366 314 45 70 chr15 37629792 37629991 -48065763 - MIR SINE MIR -13 249 56 561 178 8 0 chr15 37629991 37630109 -48065645 - L1MB2 LINE L1 0 6171 6053 366 314 45 70 chr15 37630109 37630151 -48065603 - MIR SINE MIR -206 56 14 1926 236 45 26 chr15 37630306 37630384 -48065370 + L1MEc LINE L1 53 128 -6268 2292 111 0 0 chr15 37630384 37630681 -48065073 - AluSq SINE Alu -15 298 2 1926 236 45 26 chr15 37630681 37631186 -48064568 + L1MEc LINE L1 128 647 -5749 1002 252 93 3 chr15 37631174 37631527 -48064227 + L1M4 LINE L1 3567 3951 -2195 * 788 189 0 0 chr15 37631529 37631709 -48064045 - FLAM_C SINE Alu 0 180 1 335 216 0 0 chr15 37631722 37631796 -48063958 + L1M4 LINE L1 3959 4032 -2114 425 265 103 15 chr15 37632645 37632781 -48062973 - MIR SINE MIR -23 239 92 2164 117 24 0 chr15 37634295 37634585 -48061169 - AluSx SINE Alu -15 297 1 209 162 18 90 chr15 37634926 37635037 -48060717 + T-rich Low_complexity Low_complexity 1 103 0 363 44 0 0 chr15 37635397 37635442 -48060312 + (TG)n Simple_repeat Simple_repeat 2 46 0 2185 91 27 3 chr15 37635622 37635918 -48059836 + AluSc SINE Alu 1 303 -6 1813 161 0 20 chr15 37636321 37636619 -48059135 + AluJb SINE Alu 2 293 -19 1950 103 0 33 chr15 37636889 37637191 -48058563 - AluY SINE Alu -19 292 1 1342 166 136 19 chr15 37637191 37637456 -48058298 - AluJo SINE Alu -16 296 1 316 207 37 37 chr15 37638284 37638366 -48057388 + MIR3 SINE MIR 113 194 -14 187 256 0 0 chr15 37639070 37639109 -48056645 - L2 LINE L2 -16 3297 3259 1862 106 16 4 chr15 37639474 37639728 -48056026 - AluSc SINE Alu -52 257 1 2233 114 0 3 chr15 37639965 37640272 -48055482 - AluSx SINE Alu -6 306 1 1283 171 9 14 chr15 37641118 37641340 -48054414 - AluJo SINE Alu -82 230 10 2166 136 0 0 chr15 37641626 37641934 -48053820 - AluSx SINE Alu -4 308 1 2117 129 0 3 chr15 37642318 37642628 -48053126 - AluSx SINE Alu -3 309 1 2357 108 0 0 chr15 37642694 37643000 -48052754 - AluSg SINE Alu -4 306 1 275 265 10 41 chr15 37643051 37643149 -48052605 + CT-rich Low_complexity Low_complexity 5 99 0 1648 166 80 0 chr15 37643668 37643981 -48051773 - MER44D DNA MER2_type 0 609 2 21 0 0 0 chr15 37644527 37644548 -48051206 + AT_rich Low_complexity Low_complexity 1 21 0 187 333 0 13 chr15 37644920 37644998 -48050756 + MIR SINE MIR 146 222 -40 254 82 204 0 chr15 37645165 37645214 -48050540 - L1MB4 LINE L1 -1 6179 6121 1173 132 123 5 chr15 37645313 37645532 -48050222 - L1MB4 LINE L1 -64 6116 5872 307 95 0 0 chr15 37645533 37645575 -48050179 - MSTA LTR MaLR 0 428 387 744 150 0 16 chr15 37645575 37645702 -48050052 + 7SK RNA RNA 1 125 -68 522 110 0 0 chr15 37645739 37645812 -48049942 + 7SK RNA RNA 121 193 0 * 832 124 138 0 chr15 37645806 37645951 -48049803 - MSTA LTR MaLR -22 406 242 832 134 168 0 chr15 37645952 37646101 -48049653 - MSTA LTR MaLR -254 174 1 1418 176 33 46 chr15 37646132 37646461 -48049293 - L1MB4 LINE L1 -286 5894 5570 29 28 0 0 chr15 37647099 37647135 -48048619 + AT_rich Low_complexity Low_complexity 1 36 0 5818 124 5 13 chr15 37647135 37647422 -48048332 - L1MA4A LINE L1 -15 6288 6002 2605 204 32 61 chr15 37647422 37647602 -48048152 - L1PA16 LINE L1 -159 6007 5823 2166 124 0 0 chr15 37647602 37647908 -48047846 - AluSx SINE Alu -6 306 1 2605 204 32 61 chr15 37647908 37648579 -48047175 - L1PA16 LINE L1 -343 5823 5198 275 218 100 0 chr15 37648582 37648692 -48047062 - L1M4 LINE L1 -2884 3964 3844 1415 194 44 14 chr15 37648697 37648991 -48046763 - AluJo SINE Alu 0 312 10 11500 168 82 49 chr15 37648999 37649931 -48045823 - L1M4 LINE L1 -3007 3841 2941 1562 182 6 59 chr15 37649931 37650255 -48045499 - AluJb SINE Alu -5 307 1 11500 168 82 49 chr15 37650255 37651140 -48044614 - L1M4 LINE L1 -3907 2941 2086 1750 166 0 14 chr15 37651140 37651429 -48044325 - AluJb SINE Alu -14 298 14 11500 168 82 49 chr15 37651429 37652934 -48042820 - L1M4 LINE L1 -4762 2086 328 1813 174 10 6 chr15 37652967 37653278 -48042476 + AluSx SINE Alu 1 312 0 1603 151 21 21 chr15 37653422 37653589 -48042165 - AluSx SINE Alu -9 303 134 1972 140 3 7 chr15 37653589 37653896 -48041858 - AluSq SINE Alu -7 306 1 1603 151 21 21 chr15 37653896 37654007 -48041747 - AluSx SINE Alu -177 135 25 1555 223 115 95 chr15 37654690 37655205 -48040549 - L1ME2 LINE L1 -23 6210 5706 321 153 14 83 chr15 37655205 37655260 -48040494 - Alu SINE Alu -250 52 17 1675 164 3 10 chr15 37655260 37655565 -48040189 - AluSq SINE Alu -10 303 1 321 153 14 83 chr15 37655565 37655581 -48040173 - Alu SINE Alu -285 17 1 1555 223 115 95 chr15 37655581 37656361 -48039393 - L1ME2 LINE L1 -527 5706 4810 219 307 7 21 chr15 37657214 37657354 -48038400 + GA-rich Low_complexity Low_complexity 1 138 0 2290 93 26 0 chr15 37657761 37658063 -48037691 + AluSx SINE Alu 1 310 -2 2070 253 115 5 chr15 37659369 37660123 -48035631 - L1ME2 LINE L1 -2024 4191 3355 478 261 113 54 chr15 37660131 37660243 -48035511 - L1ME2 LINE L1 -4763 1633 1529 2045 121 3 3 chr15 37660243 37660533 -48035221 - AluSx SINE Alu -22 290 1 478 261 113 54 chr15 37660533 37660949 -48034805 - L1ME2 LINE L1 -4867 1529 923 189 0 0 0 chr15 37660949 37660970 -48034784 + (TA)n Simple_repeat Simple_repeat 1 21 0 478 261 113 54 chr15 37660970 37661018 -48034736 - L1ME2 LINE L1 -5473 923 879 211 169 0 34 chr15 37661018 37661077 -48034677 + CT-rich Low_complexity Low_complexity 5 61 0 767 182 0 28 chr15 37661344 37661487 -48034267 - FLAM_C SINE Alu 0 143 5 2086 240 61 7 chr15 37661500 37662055 -48033699 - L1MD2 LINE L1 -2 6357 5773 243 346 40 46 chr15 37663353 37663682 -48032072 - L1ME2 LINE L1 -5712 684 358 426 39 0 0 chr15 37664139 37664191 -48031563 + (TA)n Simple_repeat Simple_repeat 2 53 0 2199 89 0 7 chr15 37664248 37664555 -48031199 - AluY SINE Alu 0 307 3 23 33 0 0 chr15 37664557 37664587 -48031167 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr15 37664614 37664636 -48031118 + AT_rich Low_complexity Low_complexity 1 22 0 1562 254 96 62 chr15 37664763 37665503 -48030251 - MER21B LTR ERV1 -82 781 17 1694 134 46 73 chr15 37665510 37665838 -48029916 - MER2 DNA MER2_type -25 320 2 2154 132 7 0 chr15 37665854 37666157 -48029597 - AluSx SINE Alu -7 305 1 485 266 44 38 chr15 37666216 37666374 -48029380 - L1MD2 LINE L1 -2144 5664 5506 272 274 44 53 chr15 37666598 37666711 -48029043 - MIR SINE MIR -32 230 119 25 31 0 0 chr15 37667345 37667377 -48028377 + AT_rich Low_complexity Low_complexity 1 32 0 1547 181 26 16 chr15 37668626 37668929 -48026825 + AluJo SINE Alu 1 306 -6 1910 159 0 0 chr15 37669316 37669625 -48026129 + AluJo SINE Alu 1 309 -3 305 194 16 0 chr15 37669923 37669985 -48025769 - MER96 DNA MER1_type? -112 63 1 245 335 117 5 chr15 37669993 37670181 -48025573 - L1ME LINE L1 -329 5841 5633 1912 120 59 45 chr15 37670811 37671169 -48024585 - MLT1A1 LTR MaLR -2 363 1 21 36 0 0 chr15 37671363 37671391 -48024363 + AT_rich Low_complexity Low_complexity 1 28 0 434 241 92 29 chr15 37672253 37672427 -48023327 - L3 LINE CR1 -295 1282 1098 299 282 73 8 chr15 37672982 37673106 -48022648 - L1MC/D LINE L1 -1961 5847 5716 238 167 0 0 chr15 37673281 37673317 -48022437 + L2 LINE L2 3195 3230 -83 960 152 0 0 chr15 37673320 37673485 -48022269 + (TA)n Simple_repeat Simple_repeat 2 166 0 1371 80 0 11 chr15 37673485 37673661 -48022093 - AluSc SINE Alu -16 293 120 307 282 12 35 chr15 37673667 37673752 -48022002 + L2 LINE L2 3183 3265 -7 577 275 47 14 chr15 37673752 37673963 -48021791 - L1MC/D LINE L1 -2230 5578 5361 228 370 37 14 chr15 37674233 37674394 -48021360 - MIR SINE MIR -82 126 4 556 250 154 0 chr15 37674525 37674681 -48021073 + MER5A DNA MER1_type 10 189 0 210 341 130 0 chr15 37675058 37675181 -48020573 + MIR SINE MIR 54 192 -70 207 265 98 20 chr15 37675684 37675786 -48019968 + L3b LINE CR1 1277 1386 -197 1902 155 0 13 chr15 37675937 37676241 -48019513 - AluSx SINE Alu -1 311 12 241 244 13 51 chr15 37676259 37676337 -48019417 - L2 LINE L2 -17 3255 3181 235 234 16 0 chr15 37676474 37676538 -48019216 + L1MCa LINE L1 2006 2070 -4356 679 226 30 18 chr15 37678882 37679046 -48016708 - MER58B DNA MER1_type -4 337 172 870 205 0 0 chr15 37679053 37679209 -48016545 - AluJo SINE Alu -22 290 135 626 229 51 0 chr15 37679209 37679366 -48016388 - MER58B DNA MER1_type -138 203 39 186 103 0 0 chr15 37679432 37679461 -48016293 + (TAG)n Simple_repeat Simple_repeat 1 29 0 471 278 6 37 chr15 37679463 37679625 -48016129 - MIR SINE MIR -10 252 96 21 0 0 0 chr15 37679853 37679874 -48015880 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr15 37680556 37680579 -48015175 + AT_rich Low_complexity Low_complexity 1 23 0 1989 65 0 50 chr15 37680694 37680973 -48014781 - AluSc SINE Alu -44 265 1 2471 69 3 0 chr15 37681848 37682151 -48013603 + AluY SINE Alu 1 304 -7 231 170 0 0 chr15 37682303 37682350 -48013404 + (TA)n Simple_repeat Simple_repeat 1 47 0 21 36 0 0 chr15 37682407 37682435 -48013319 + AT_rich Low_complexity Low_complexity 1 28 0 207 194 0 0 chr15 37682702 37682738 -48013016 + (TCTG)n Simple_repeat Simple_repeat 4 39 0 331 297 0 0 chr15 37682961 37683052 -48012702 + CT-rich Low_complexity Low_complexity 2 92 0 216 0 0 0 chr15 37683070 37683094 -48012660 + (T)n Simple_repeat Simple_repeat 1 24 0 743 171 8 8 chr15 37684160 37684289 -48011465 - AluJo SINE Alu -183 129 1 288 336 33 16 chr15 37684881 37685003 -48010751 + MIR3 SINE MIR 79 202 -6 22 35 0 0 chr15 37685052 37685081 -48010673 + AT_rich Low_complexity Low_complexity 1 29 0 535 237 116 70 chr15 37685253 37685582 -48010172 - L1ME4a LINE L1 -240 5881 5538 961 265 82 20 chr15 37685762 37686162 -48009592 - L1ME1 LINE L1 -8 6158 5734 208 262 135 64 chr15 37687178 37687319 -48008435 - L2 LINE L2 -166 3147 2997 284 328 69 0 chr15 37687596 37687712 -48008042 - L2 LINE L2 0 3313 3190 1226 149 57 34 chr15 37689130 37689392 -48006362 + Tigger6 DNA MER2_type 1330 1597 0 1454 270 95 72 chr15 37689394 37690142 -48005612 - L2 LINE L2 -2000 1314 550 200 215 8 157 chr15 37690166 37690287 -48005467 - L2 LINE L2 -3205 109 7 183 298 64 0 chr15 37690532 37690579 -48005175 + L2 LINE L2 3251 3300 -13 21 36 0 0 chr15 37691048 37691076 -48004678 + AT_rich Low_complexity Low_complexity 1 28 0 250 246 18 0 chr15 37691086 37691143 -48004611 - MER81 DNA DNA 0 114 57 399 359 129 46 chr15 37691473 37691799 -48003955 - L2 LINE L2 -4 3268 2916 243 305 9 57 chr15 37691833 37691938 -48003816 - L2 LINE L2 -660 2654 2555 611 316 60 35 chr15 37691961 37692639 -48003115 + L1M4 LINE L1 4280 4974 -1172 1493 289 101 44 chr15 37692735 37693234 -48002520 + L1MEc LINE L1 35 504 -5892 1479 184 0 46 chr15 37693234 37693538 -48002216 + AluJo SINE Alu 1 290 -22 1493 289 101 44 chr15 37693538 37694113 -48001641 + L1MEc LINE L1 504 1170 -5226 1604 284 68 15 chr15 37694136 37694885 -48000869 + L1MEc LINE L1 1277 2065 -4331 985 194 63 29 chr15 37694886 37695092 -48000662 + MER58A DNA MER1_type 3 215 -9 457 244 85 15 chr15 37695107 37695308 -48000446 + L1MEc LINE L1 2057 2271 -4125 461 155 0 0 chr15 37695308 37695379 -48000375 + FLAM_A SINE Alu 45 115 -27 303 229 55 0 chr15 37695397 37695506 -48000248 + L1MEc LINE L1 2257 2371 -4025 808 240 0 22 chr15 37695522 37695701 -48000053 + AluJb SINE Alu 136 310 -2 3945 257 75 60 chr15 37695825 37695853 -47999901 + L1M4 LINE L1 3589 3615 -2531 2200 90 13 13 chr15 37695853 37696152 -47999602 + AluY SINE Alu 1 299 -12 3945 257 75 60 chr15 37696152 37696590 -47999164 + L1M4 LINE L1 3615 4045 -2101 405 67 0 0 chr15 37696590 37696650 -47999104 - Alu SINE Alu -12 298 239 3945 257 75 60 chr15 37696650 37697837 -47997917 + L1M4 LINE L1 4045 5328 -818 14881 152 27 16 chr15 37697841 37699653 -47996101 + L1MA2 LINE L1 1977 3767 -3956 2150 125 0 7 chr15 37699653 37699958 -47995796 + AluSx SINE Alu 1 303 -9 459 28 14 28 chr15 37699961 37700032 -47995722 + (TA)n Simple_repeat Simple_repeat 2 71 0 14881 152 27 16 chr15 37700032 37700103 -47995651 + L1MA2 LINE L1 3768 3837 -3886 2018 171 54 20 chr15 37700103 37700512 -47995242 + MSTA LTR MaLR 5 427 -1 14881 152 27 16 chr15 37700512 37701029 -47994725 + L1MA2 LINE L1 3837 4347 -3376 1572 207 3 0 chr15 37701029 37701324 -47994430 + AluJo SINE Alu 1 296 -16 14881 152 27 16 chr15 37701324 37704597 -47991157 + L1MA2 LINE L1 4347 7723 0 306 197 0 0 chr15 37704599 37704660 -47991094 + L1M LINE L1 5297 5357 -805 21 0 0 0 chr15 37704905 37704926 -47990828 + AT_rich Low_complexity Low_complexity 1 21 0 205 220 20 0 chr15 37704926 37704976 -47990778 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 328 307 10 10 chr15 37705587 37705688 -47990066 + L1MDb LINE L1 1129 1229 -5180 367 302 117 38 chr15 37705729 37706178 -47989576 + L1MDb LINE L1 1213 1849 -4738 745 278 94 31 chr15 37706494 37707009 -47988745 + L1MDb LINE L1 2284 2785 -3621 500 213 8 8 chr15 37707517 37707639 -47988115 - L1MA9 LINE L1 -38 6274 6153 1791 148 17 17 chr15 37707855 37708145 -47987609 + AluJo SINE Alu 1 290 -22 2285 78 16 13 chr15 37708152 37708459 -47987295 + AluY SINE Alu 4 311 0 387 321 106 57 chr15 37708459 37709219 -47986535 - L2 LINE L2 -22 3250 2462 489 273 36 36 chr15 37710773 37710967 -47984787 + L2 LINE L2 3113 3306 -7 208 254 119 0 chr15 37711008 37711067 -47984687 - L2 LINE L2 -210 3062 2997 2387 90 0 0 chr15 37711179 37711480 -47984274 + AluSx SINE Alu 1 301 -11 776 308 75 61 chr15 37712860 37713681 -47982073 + L2 LINE L2 2052 2884 -430 31 0 0 0 chr15 37713705 37713736 -47982018 + AT_rich Low_complexity Low_complexity 1 31 0 1111 196 5 10 chr15 37713736 37713940 -47981814 - AluJb SINE Alu -23 289 87 681 252 7 7 chr15 37713945 37714100 -47981654 - MER5B DNA MER1_type -20 158 4 451 80 0 80 chr15 37714333 37714408 -47981346 - MER96B DNA MER1_type? -186 231 163 1652 189 36 0 chr15 37714412 37714693 -47981061 - AluJb SINE Alu -21 291 1 750 219 26 0 chr15 37714694 37714849 -47980905 - AluJb SINE Alu -37 275 117 616 183 44 7 chr15 37714849 37714986 -47980768 - MER96B DNA MER1_type? -275 142 1 441 301 15 7 chr15 37715009 37715145 -47980609 + L2 LINE L2 3136 3272 0 288 309 0 0 chr15 37715538 37715632 -47980122 - MER5A DNA MER1_type -82 107 14 323 350 29 7 chr15 37715651 37715791 -47979963 - MER5A DNA MER1_type 0 189 47 279 122 0 0 chr15 37716326 37716375 -47979379 + (T)n Simple_repeat Simple_repeat 1 49 0 2229 103 6 3 chr15 37716431 37716742 -47979012 - AluSq SINE Alu -1 312 1 417 185 46 37 chr15 37717063 37717171 -47978583 - AluJo/FRAM SINE Alu -8 304 196 244 184 0 0 chr15 37717171 37717209 -47978545 - Alu SINE Alu -264 38 1 725 283 64 54 chr15 37717209 37717393 -47978361 - L1MC/D LINE L1 -1985 5823 5642 2280 89 0 23 chr15 37717393 37717697 -47978057 - AluSc SINE Alu -12 297 1 1858 97 7 57 chr15 37717706 37718006 -47977748 - AluSx SINE Alu 0 312 28 725 283 64 54 chr15 37718006 37718312 -47977442 - L1MC/D LINE L1 -2173 5635 5318 1910 128 7 4 chr15 37718443 37718762 -47976992 - AluSx SINE Alu 0 320 1 1642 157 7 16 chr15 37718954 37719259 -47976495 + AluSx SINE Alu 11 312 0 322 254 191 0 chr15 37720027 37720153 -47975601 - MER103 DNA DNA -16 150 1 22 0 0 0 chr15 37720273 37720295 -47975459 + AT_rich Low_complexity Low_complexity 1 22 0 2234 91 7 0 chr15 37720995 37721291 -47974463 - AluSx SINE Alu -14 298 1 1000 205 5 0 chr15 37724129 37724314 -47971440 + MER5A DNA MER1_type 2 187 -2 385 172 108 21 chr15 37724530 37724623 -47971131 - L1MC2 LINE L1 -13 6331 6231 * 639 147 0 9 chr15 37724611 37724720 -47971034 - L1MC3 LINE L1 -332 7453 7346 2112 62 0 0 chr15 37724835 37725094 -47970660 - AluY SINE Alu -4 307 49 505 296 65 16 chr15 37725552 37725738 -47970016 - MIR SINE MIR -61 201 7 21 0 0 0 chr15 37725743 37725764 -47969990 + AT_rich Low_complexity Low_complexity 1 21 0 2121 128 0 0 chr15 37727184 37727481 -47968273 - AluSx SINE Alu -15 297 1 1771 95 37 0 chr15 37728171 37728412 -47967342 - AluY SINE Alu 0 311 62 274 243 63 36 chr15 37729097 37729152 -47966602 - L1MC4 LINE L1 -1 8041 7989 2224 105 31 0 chr15 37729152 37729446 -47966308 - AluSx SINE Alu -8 304 2 274 243 63 36 chr15 37729446 37729501 -47966253 - L1MC4 LINE L1 -53 7989 7928 222 329 0 26 chr15 37729507 37729583 -47966171 + CT-rich Low_complexity Low_complexity 4 77 0 352 203 110 68 chr15 37730484 37730602 -47965152 + L2 LINE L2 3191 3313 0 616 242 118 0 chr15 37730871 37731032 -47964722 - MER58C DNA MER1_type 0 215 36 305 233 33 33 chr15 37731133 37731253 -47964501 - L1MC5 LINE L1 -218 7743 7624 281 234 0 0 chr15 37731876 37731940 -47963814 - MER5A DNA MER1_type -77 112 49 192 40 0 0 chr15 37731945 37731970 -47963784 + (CTG)n Simple_repeat Simple_repeat 2 26 0 2110 137 55 73 chr15 37732192 37732629 -47963125 - MSTB1 LTR MaLR 0 432 4 187 255 104 75 chr15 37732813 37732919 -47962835 - L2 LINE L2 -15 3298 3190 1823 119 28 32 chr15 37733411 37733696 -47962058 + AluJo SINE Alu 9 292 -20 300 242 150 39 chr15 37733701 37733854 -47961900 + L1ME4a LINE L1 5896 6065 -56 374 298 37 64 chr15 37735797 37736015 -47959739 - L1MC4 LINE L1 -1 8041 7830 1366 220 113 27 chr15 37736063 37736472 -47959282 - L1ME2 LINE L1 -23 6141 5698 2168 160 16 30 chr15 37736476 37736913 -47958841 - L1MB4 LINE L1 0 6180 5750 5100 189 38 18 chr15 37737133 37738347 -47957407 - L1MD2 LINE L1 -2 6357 5113 1548 160 0 4 chr15 37738644 37738888 -47956866 + AluJo SINE Alu 1 243 -69 21 36 0 0 chr15 37739011 37739039 -47956715 + AT_rich Low_complexity Low_complexity 1 28 0 2242 96 0 10 chr15 37739181 37739493 -47956261 - AluSc SINE Alu 0 309 1 3229 100 0 6 chr15 37739500 37739969 -47955785 - L1PA8 LINE L1 0 6172 5707 203 406 56 22 chr15 37740512 37740692 -47955062 + MIR3 SINE MIR 21 206 -2 730 222 58 94 chr15 37740960 37741491 -47954263 + L1MC5 LINE L1 7400 7911 -50 343 294 217 14 chr15 37741623 37741766 -47953988 - MIR3 SINE MIR -27 181 10 1574 121 4 4 chr15 37742207 37742438 -47953316 - AluJb SINE Alu -3 309 79 2207 4 0 0 chr15 37742529 37742767 -47952987 + AluYb8 SINE Alu 1 238 -80 3957 158 68 19 chr15 37742867 37743673 -47952081 - L1 LINE L1 -1233 5934 5089 5287 192 30 29 chr15 37743709 37744026 -47951728 - L1 LINE L1 -2635 4532 4217 2340 100 0 3 chr15 37744026 37744335 -47951419 - AluY SINE Alu -3 308 1 5287 192 30 29 chr15 37744335 37745144 -47950610 - L1 LINE L1 -2950 4217 3401 2205 107 3 0 chr15 37745144 37745435 -47950319 - AluSx SINE Alu -20 292 1 5287 192 30 29 chr15 37745435 37745606 -47950148 - L1 LINE L1 -3766 3401 3232 527 136 23 11 chr15 37745614 37745702 -47950052 + FLAM SINE Alu 38 126 -17 2186 149 25 159 chr15 37745753 37745864 -47949890 - L1 LINE L1 -3948 3220 3096 2438 75 0 0 chr15 37745864 37746169 -47949585 - AluY SINE Alu -6 305 1 216 0 0 0 chr15 37746171 37746195 -47949559 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2186 149 25 159 chr15 37746195 37746805 -47948949 - L1 LINE L1 -4073 3095 2593 1577 163 87 17 chr15 37746846 37747134 -47948620 - AluSx SINE Alu 0 312 5 736 190 0 0 chr15 37747211 37747332 -47948422 - AluJb SINE Alu -191 121 1 8056 186 24 9 chr15 37747332 37749004 -47946750 - L1 LINE L1 -4699 2469 676 24 32 0 0 chr15 37749607 37749638 -47946116 + AT_rich Low_complexity Low_complexity 1 31 0 224 359 11 11 chr15 37751257 37751349 -47944405 - L3 LINE CR1 -892 685 594 276 100 0 0 chr15 37751618 37751658 -47944096 + (TG)n Simple_repeat Simple_repeat 2 41 0 180 347 121 32 chr15 37752010 37752134 -47943620 + MIR3 SINE MIR 1 135 -73 341 179 325 8 chr15 37753659 37753782 -47941972 - MER103 DNA DNA -2 164 3 485 229 271 7 chr15 37753850 37753990 -47941764 + MER5B DNA MER1_type 1 177 -1 1531 197 69 3 chr15 37753999 37754319 -47941435 + MER58B DNA MER1_type 1 341 0 566 206 53 38 chr15 37754325 37754456 -47941298 + MER5A DNA MER1_type 2 134 -55 249 347 50 0 chr15 37755049 37755170 -47940584 + L3b LINE CR1 1371 1497 -86 265 296 49 12 chr15 37755464 37755545 -47940209 + L2 LINE L2 3187 3270 -2 1258 210 48 28 chr15 37756127 37756418 -47939336 + AluJo SINE Alu 1 297 -15 2101 132 3 0 chr15 37756784 37757087 -47938667 - AluSx SINE Alu -8 304 1 207 0 0 0 chr15 37757267 37757290 -47938464 + (T)n Simple_repeat Simple_repeat 1 23 0 404 311 74 7 chr15 37757717 37757865 -47937889 + MER20B DNA MER1_type 4 161 -622 460 228 44 22 chr15 37758126 37758262 -47937492 + Charlie8 DNA MER1_type 25 163 -2254 185 192 0 39 chr15 37758515 37758567 -47937187 + (TATG)n Simple_repeat Simple_repeat 2 51 0 822 141 59 0 chr15 37758854 37758989 -47936765 + L1MC4 LINE L1 6803 6945 -1097 21 0 0 0 chr15 37759005 37759026 -47936728 + AT_rich Low_complexity Low_complexity 1 21 0 2219 232 98 7 chr15 37759059 37759658 -47936096 + L1MC4 LINE L1 7238 7891 -151 2028 127 7 0 chr15 37759678 37759986 -47935768 - AluSx SINE Alu -2 310 1 281 225 28 0 chr15 37759995 37760066 -47935688 + L1MC4 LINE L1 7969 8041 -1 538 196 0 0 chr15 37760931 37761033 -47934721 + U13 snRNA snRNA 1 102 -2 304 306 115 25 chr15 37761116 37761273 -47934481 + L1ME4a LINE L1 5901 6071 -50 22 0 0 0 chr15 37761835 37761857 -47933897 + AT_rich Low_complexity Low_complexity 1 22 0 231 170 0 0 chr15 37761953 37762000 -47933754 + CT-rich Low_complexity Low_complexity 4 50 0 614 157 107 8 chr15 37762002 37762123 -47933631 - FLAM_A SINE Alu 0 133 1 311 247 193 13 chr15 37762946 37763096 -47932658 - MIR SINE MIR -12 250 74 1106 166 83 25 chr15 37763151 37763429 -47932325 + MER33 DNA MER1_type 31 324 0 180 77 0 0 chr15 37766461 37766487 -47929267 + (TCCC)n Simple_repeat Simple_repeat 1 26 0 315 232 179 0 chr15 37767501 37767613 -47928141 + HAL1 LINE L1 101 232 -2275 2073 69 22 100 chr15 37767662 37767982 -47927772 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr15 37768113 37768134 -47927620 + AT_rich Low_complexity Low_complexity 1 21 0 329 167 0 0 chr15 37768134 37768182 -47927572 + A-rich Low_complexity Low_complexity 1 48 0 409 262 122 33 chr15 37768340 37768554 -47927200 - L1ME LINE L1 -351 5770 5538 180 0 0 0 chr15 37768560 37768580 -47927174 + (TA)n Simple_repeat Simple_repeat 2 21 0 2337 214 108 57 chr15 37768713 37769752 -47926002 + L1MC5 LINE L1 6693 7913 -48 891 145 0 0 chr15 37769770 37769901 -47925853 + FLAM_C SINE Alu 1 131 -2 22 56 0 0 chr15 37770550 37770586 -47925168 + AT_rich Low_complexity Low_complexity 1 36 0 418 318 76 0 chr15 37770885 37771017 -47924737 - L2 LINE L2 -13 3259 3118 211 143 29 0 chr15 37772343 37772378 -47923376 + L2 LINE L2 3266 3301 -12 23 0 0 0 chr15 37772871 37772894 -47922860 + AT_rich Low_complexity Low_complexity 1 23 0 1301 183 119 4 chr15 37773380 37773648 -47922106 - AluJo SINE Alu -13 299 1 237 257 158 13 chr15 37773649 37773801 -47921953 - Charlie7 DNA MER1_type -5 2607 2434 * 288 289 72 0 chr15 37773784 37773881 -47921873 - Charlie7 DNA MER1_type -2508 104 1 354 264 102 89 chr15 37773955 37774270 -47921484 + L1ME4a LINE L1 5792 6110 -11 288 174 23 35 chr15 37774331 37774417 -47921337 + L1MC5 LINE L1 7833 7917 -44 309 26 0 0 chr15 37774572 37774610 -47921144 + (CA)n Simple_repeat Simple_repeat 2 39 0 2297 99 0 7 chr15 37774764 37775068 -47920686 - AluSg1 SINE Alu -7 302 1 395 261 190 0 chr15 37775401 37775543 -47920211 + MIR SINE MIR 76 244 -18 409 275 111 65 chr15 37775675 37776038 -47919716 + MLT1L LTR MaLR 165 553 -35 684 194 0 8 chr15 37777051 37777180 -47918574 + FLAM_C SINE Alu 2 129 -4 251 288 72 22 chr15 37777264 37777403 -47918351 + HAL1 LINE L1 1429 1574 -933 289 272 9 65 chr15 37778148 37778380 -47917374 + L1M4 LINE L1 2135 2353 -3793 313 332 97 16 chr15 37778624 37778871 -47916883 + L1M4 LINE L1 2673 2939 -3207 381 232 122 0 chr15 37779028 37779110 -47916644 - MER96 DNA MER1_type? 0 175 84 254 222 0 0 chr15 37779189 37779243 -47916511 + MER96 DNA MER1_type? 118 171 -4 426 221 16 8 chr15 37779289 37779416 -47916338 + CT-rich Low_complexity Low_complexity 2 129 0 1854 120 16 79 chr15 37779733 37779869 -47915885 + AluSx SINE Alu 1 144 -168 2463 83 3 0 chr15 37779869 37780181 -47915573 + AluSp SINE Alu 1 313 0 1854 120 16 79 chr15 37780181 37780360 -47915394 + AluSx SINE Alu 144 296 -16 1846 124 52 0 chr15 37781081 37781371 -47914383 + AluSx SINE Alu 1 305 -7 2306 84 3 3 chr15 37781492 37781789 -47913965 + AluSc SINE Alu 1 297 -12 489 137 0 0 chr15 37781853 37781926 -47913828 + AluS SINE Alu 1 73 -239 2061 126 0 36 chr15 37832185 37832494 -47863260 - AluSx SINE Alu -14 298 1 1900 218 35 48 chr15 37832796 37833277 -47862477 + MLT2B1 LTR ERVL 1 475 -45 1595 161 47 4 chr15 37833279 37833546 -47862208 + MER7A DNA MER2_type 3 279 -67 601 154 11 0 chr15 37833546 37833637 -47862117 - LTR36 LTR ERV1 0 611 520 1272 82 6 6 chr15 37833637 37833807 -47861947 + L1PA12 LINE L1 5673 5842 -326 1064 226 48 96 chr15 37836960 37837485 -47858269 + MER34 LTR ERV1 1 557 -38 2327 94 0 10 chr15 37837579 37837877 -47857877 - AluSg SINE Alu -15 295 1 509 240 187 0 chr15 37837877 37838027 -47857727 - MER5A DNA MER1_type -3 186 9 778 179 17 29 chr15 37838041 37838214 -47857540 - MER5A DNA MER1_type -18 171 1 356 295 77 0 chr15 37838214 37838368 -47857386 + MIR SINE MIR 17 182 -80 242 200 17 33 chr15 37839126 37839186 -47856568 - MLT1K LTR MaLR -8 580 522 190 278 200 17 chr15 37840251 37840366 -47855388 - MIR3 SINE MIR -15 193 58 404 237 167 32 chr15 37841227 37841383 -47854371 + MIR SINE MIR 29 205 -57 375 264 208 0 chr15 37841392 37841536 -47854218 - MER5A DNA MER1_type -7 182 9 252 205 241 18 chr15 37842929 37843041 -47852713 - MER117 DNA MER1_type -60 137 1 717 272 144 7 chr15 37843167 37843472 -47852282 - L3 LINE CR1 -82 1495 1149 312 83 0 0 chr15 37843699 37843747 -47852007 + (CA)n Simple_repeat Simple_repeat 2 49 0 3658 111 52 32 chr15 37843969 37844589 -47851165 + MER39B LTR ERV1 20 651 -2 198 259 52 17 chr15 37844807 37844865 -47850889 - MIR SINE MIR -163 99 40 226 208 0 0 chr15 37845079 37845127 -47850627 + MIR SINE MIR 104 151 -111 1106 185 19 5 chr15 37845573 37845789 -47849965 - MER20 DNA MER1_type 0 219 1 191 294 39 49 chr15 37846917 37847019 -47848735 - MIR3 SINE MIR -9 199 99 547 245 99 19 chr15 37847026 37847255 -47848499 - MIR SINE MIR -3 259 8 180 244 24 0 chr15 37847364 37847405 -47848349 - L2 LINE L2 -94 3178 3137 1985 89 0 11 chr15 37847469 37847751 -47848003 + AluY SINE Alu 31 309 -2 185 318 79 24 chr15 37848140 37848266 -47847488 + L2 LINE L2 3137 3269 -3 1992 138 53 60 chr15 37848689 37849087 -47846667 - MLT2C1 LTR ERVL -2 395 1 1316 264 63 34 chr15 37849403 37849850 -47845904 + LTR40c LTR ERVL 1 460 -5 273 291 47 0 chr15 37850141 37850227 -47845527 - L2 LINE L2 -38 3275 3186 753 154 73 0 chr15 37850832 37850955 -47844799 + AluSq/x SINE Alu 2 133 -179 242 336 97 35 chr15 37851239 37851352 -47844402 - L2 LINE L2 -8 3264 3145 295 313 88 19 chr15 37851576 37851736 -47844018 - MIR SINE MIR -43 219 49 397 291 85 7 chr15 37851852 37851993 -47843761 + L3 LINE CR1 1425 1576 -1 1894 176 27 32 chr15 37852316 37852669 -47843085 + MLT1A2 LTR MaLR 2 354 -20 2385 143 87 2 chr15 37852669 37853062 -47842692 - MSTB LTR MaLR 0 426 1 1894 176 27 32 chr15 37853062 37853083 -47842671 + MLT1A2 LTR MaLR 354 374 0 369 339 26 43 chr15 37854751 37854981 -47840773 + L2 LINE L2 2545 2770 -544 462 365 63 4 chr15 37855155 37855393 -47840361 - MIR SINE MIR -10 252 1 2137 195 73 26 chr15 37855566 37855709 -47840045 + MER63 DNA MER1_type 501 636 -425 1067 206 28 5 chr15 37855709 37855927 -47839827 + MER58A DNA MER1_type 2 224 0 2137 195 73 26 chr15 37855927 37856290 -47839464 + MER63 DNA MER1_type 636 1031 -30 439 244 175 6 chr15 37856983 37857143 -47838611 + MIR SINE MIR 21 207 -55 1368 140 133 7 chr15 37857228 37857499 -47838255 - AluJb SINE Alu -2 310 6 207 100 0 0 chr15 37858379 37858409 -47837345 + (CACCC)n Simple_repeat Simple_repeat 4 33 0 1001 195 5 11 chr15 37858796 37858981 -47836773 - MER5A DNA MER1_type -5 184 1 308 334 234 10 chr15 37859448 37859849 -47835905 + MLT1K LTR MaLR 98 588 0 958 187 16 16 chr15 37860710 37860897 -47834857 + MER5A DNA MER1_type 3 189 0 1744 129 44 14 chr15 37861279 37861573 -47834181 + AluSx SINE Alu 1 303 -9 446 298 50 0 chr15 37862342 37862503 -47833251 + MIR SINE MIR 75 243 -19 201 366 10 30 chr15 37862614 37862715 -47833039 + L2 LINE L2 3173 3271 -1 233 222 19 19 chr15 37862911 37862965 -47832789 - MIR SINE MIR -94 114 61 532 265 142 12 chr15 37863319 37863481 -47832273 + MER5A DNA MER1_type 7 189 0 2120 113 3 6 chr15 37863946 37864257 -47831497 - AluSx SINE Alu -2 310 1 416 303 56 0 chr15 37864307 37864449 -47831305 - L2 LINE L2 0 3272 3123 446 228 24 8 chr15 37864641 37864768 -47830986 + L1MC4 LINE L1 7689 7817 -225 957 118 0 0 chr15 37864782 37864917 -47830837 + AluSg/x SINE Alu 163 297 -15 227 228 114 44 chr15 37865015 37865173 -47830581 + L1MC4 LINE L1 7874 8042 0 436 362 15 10 chr15 37865278 37865474 -47830280 - MIR SINE MIR -46 216 20 251 215 15 15 chr15 37866237 37866302 -47829452 + L2 LINE L2 3197 3261 -11 2288 139 35 11 chr15 37866304 37866679 -47829075 + MLT1B LTR MaLR 1 384 -6 1342 157 119 81 chr15 37867017 37867438 -47828316 + LTR7 LTR ERV1 1 437 -13 1878 120 4 0 chr15 37867910 37868185 -47827569 + AluSx SINE Alu 1 276 -36 440 265 66 0 chr15 37868380 37868516 -47827238 + MIR SINE MIR 74 218 -44 21 36 0 0 chr15 37869355 37869383 -47826371 + AT_rich Low_complexity Low_complexity 1 28 0 324 202 73 46 chr15 37869398 37869507 -47826247 + MER90 LTR ERV1 356 467 -147 219 275 0 75 chr15 37869602 37869682 -47826072 + MIR SINE MIR 130 203 -59 572 228 71 49 chr15 37871244 37871380 -47824374 + MER5A DNA MER1_type 2 145 -44 2178 105 0 0 chr15 37871380 37871684 -47824070 + AluSg SINE Alu 1 304 -6 572 228 71 49 chr15 37871684 37871731 -47824023 + MER5A DNA MER1_type 145 189 0 206 213 0 0 chr15 37874315 37874362 -47821392 + L2 LINE L2 3002 3048 -224 3057 218 54 35 chr15 37874467 37875203 -47820551 - MER97a DNA MER1_type? 0 894 139 2031 107 3 3 chr15 37875203 37875494 -47820260 - AluSq SINE Alu -22 291 1 3057 218 54 35 chr15 37875494 37875591 -47820163 - MER97a DNA MER1_type? -755 139 45 1614 166 71 25 chr15 37875766 37876134 -47819620 + Charlie1 DNA MER1_type 2343 2727 -34 263 238 79 56 chr15 37876577 37876703 -47819051 + MIR SINE MIR 21 149 -113 1256 132 18 53 chr15 37876888 37877115 -47818639 - MER20 DNA MER1_type 0 219 1 795 217 29 10 chr15 37877506 37877713 -47818041 + L1ME3A LINE L1 5747 5957 -213 1819 239 176 26 chr15 37879865 37880019 -47815735 - L2 LINE L2 -1 3312 3183 2246 77 3 0 chr15 37880019 37880317 -47815437 + AluSg SINE Alu 1 299 -11 1819 239 176 26 chr15 37880317 37881060 -47814694 - L2 LINE L2 -130 3183 2284 2250 99 0 0 chr15 37881219 37881523 -47814231 - AluSg SINE Alu -2 308 5 195 284 122 14 chr15 37882212 37882286 -47813468 + MIR SINE MIR 70 151 -111 287 25 25 0 chr15 37882421 37882461 -47813293 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 597 116 12 0 chr15 37882461 37882547 -47813207 - FLAM_C SINE Alu -27 116 30 186 286 0 0 chr15 37883144 37883161 -47812593 + MIR SINE MIR 201 249 -13 189 156 0 0 chr15 37883161 37883193 -47812561 + L2 LINE L2 3263 3294 -19 490 267 118 44 chr15 37883248 37883263 -47812491 + MIR SINE MIR 11 23 -239 1812 148 0 17 chr15 37883263 37883561 -47812193 + AluJo SINE Alu 9 301 -11 490 267 118 44 chr15 37883561 37883779 -47811975 + MIR SINE MIR 23 257 -5 244 261 90 85 chr15 37883905 37884093 -47811661 - MER5A DNA MER1_type 0 189 1 1859 127 3 47 chr15 37884597 37884919 -47810835 - AluSx SINE Alu -4 308 1 254 319 111 15 chr15 37885370 37885505 -47810249 - MIR SINE MIR -103 159 12 391 217 252 14 chr15 37885993 37886136 -47809618 + MIR SINE MIR 62 238 -24 408 200 127 5 chr15 37886136 37886274 -47809480 - MIR SINE MIR -62 146 41 430 261 147 6 chr15 37887255 37887412 -47808342 - MIR SINE MIR -60 202 24 2048 159 25 30 chr15 37887536 37888054 -47807700 - MLT2A2 LTR ERVL -44 508 1 1391 166 78 71 chr15 37888463 37888636 -47807118 - LTR37A LTR ERV1 -2 424 254 2419 53 3 0 chr15 37888636 37888939 -47806815 + AluY SINE Alu 1 304 -7 1391 166 78 71 chr15 37888939 37889186 -47806568 - LTR37A LTR ERV1 -172 254 1 386 299 22 7 chr15 37889369 37889506 -47806248 + MIR SINE MIR 94 232 -30 1331 167 4 32 chr15 37889760 37890012 -47805742 + AluJo SINE Alu 66 310 -2 2186 109 0 0 chr15 37891228 37891539 -47804215 + AluSx SINE Alu 1 311 -1 449 264 9 0 chr15 37892169 37892275 -47803479 - L2 LINE L2 -1120 2194 2088 2223 98 0 16 chr15 37892315 37892632 -47803122 + AluSp SINE Alu 1 312 -1 404 294 102 53 chr15 37892712 37892997 -47802757 - L1MC/D LINE L1 -751 5395 5216 654 264 96 16 chr15 37893192 37893632 -47802122 - L1ME4a LINE L1 -4 6117 5643 2085 153 21 44 chr15 37893654 37894041 -47801713 - L1PA16 LINE L1 -20 6146 5769 325 277 71 113 chr15 37894044 37894354 -47801400 - L1ME4a LINE L1 -472 5649 5353 1066 194 128 53 chr15 37894676 37894996 -47800758 + MER2 DNA MER2_type 1 344 0 695 313 68 27 chr15 37895100 37895582 -47800172 - L1MC/D LINE L1 -1997 5811 5310 1981 110 0 58 chr15 37895724 37896051 -47799703 - AluSg SINE Alu -2 308 1 566 322 79 48 chr15 37896758 37897226 -47798528 - L1MC/D LINE L1 -2756 3390 2897 3228 134 54 33 chr15 37897226 37897742 -47798012 - MER1A DNA MER1_type 0 527 1 566 322 79 48 chr15 37897742 37897791 -47797963 - L1MC/D LINE L1 -3249 2897 2851 26 0 0 0 chr15 37897816 37897842 -47797912 + AT_rich Low_complexity Low_complexity 1 26 0 * 752 256 71 27 chr15 37897830 37898166 -47797588 - L1MC4 LINE L1 -4 8038 7688 228 185 9 93 chr15 37898154 37898262 -47797492 + L1MC4 LINE L1 6605 6703 -1339 * 433 190 140 0 chr15 37898686 37898786 -47796968 - MIR SINE MIR -76 186 73 307 307 99 67 chr15 37898872 37899510 -47796244 - L1MC/D LINE L1 -3315 2831 2174 2521 53 0 7 chr15 37899524 37899826 -47795928 + AluY SINE Alu 1 300 -11 386 232 22 80 chr15 37899884 37900022 -47795732 + MIR SINE MIR 63 192 -70 180 0 0 0 chr15 37901040 37901060 -47794694 + (T)n Simple_repeat Simple_repeat 1 20 0 336 205 60 24 chr15 37901080 37901163 -47794591 - MER5A DNA MER1_type -31 158 73 2218 133 0 0 chr15 37901174 37901483 -47794271 - AluSx SINE Alu -3 309 1 456 252 111 28 chr15 37901551 37901703 -47794051 + MIR SINE MIR 38 199 -58 2122 132 0 0 chr15 37901935 37902231 -47793523 - AluSx SINE Alu -12 300 5 21 57 0 0 chr15 37902382 37902417 -47793337 + AT_rich Low_complexity Low_complexity 1 35 0 4254 160 11 16 chr15 37904451 37905199 -47790555 + MER49 LTR ERV1 180 923 0 253 218 18 18 chr15 37905401 37905456 -47790298 + MLT1E2 LTR MaLR 1 55 -599 2082 223 73 5 chr15 37905493 37905932 -47789822 + MLT1E2 LTR MaLR 156 624 -2 698 299 113 0 chr15 37906213 37906444 -47789310 + MLT1L LTR MaLR 359 615 0 266 273 23 47 chr15 37906738 37906866 -47788888 + MIR SINE MIR 78 202 -60 283 190 0 35 chr15 37906908 37906966 -47788788 + L2 LINE L2 3250 3305 -8 1943 128 4 0 chr15 37907581 37907855 -47787899 + L1PA13 LINE L1 5886 6160 -3 1013 189 139 0 chr15 37907855 37908093 -47787661 - L1 LINE L1 -1609 4537 4267 2858 135 103 10 chr15 37908093 37908590 -47787164 - LTR36 LTR ERV1 -68 543 1 295 264 0 14 chr15 37908590 37908662 -47787092 + Tigger3(Golem) DNA MER2_type 2956 3026 -3 674 55 11 0 chr15 37908662 37908753 -47787001 + (TCTA)n Simple_repeat Simple_repeat 1 92 0 299 114 0 0 chr15 37908753 37908797 -47786957 + MLT2B1 LTR ERVL 477 520 0 241 247 243 95 chr15 37908989 37909078 -47786676 - L2 LINE L2 -2 3311 3237 2181 117 0 7 chr15 37909078 37909387 -47786367 - AluSx SINE Alu 0 312 6 241 247 243 95 chr15 37909387 37909540 -47786214 - L2 LINE L2 -76 3237 3033 1834 189 30 11 chr15 37909569 37909935 -47785819 - MLT1D LTR MaLR 0 505 133 2719 148 33 86 chr15 37909950 37910552 -47785202 + MER34C LTR ERV1 16 585 0 2125 157 52 11 chr15 37910587 37910956 -47784798 - MLT1B LTR MaLR 0 390 7 4169 119 49 10 chr15 37911559 37912187 -47783567 + MER39B LTR ERV1 1 653 0 967 167 90 162 chr15 37912928 37913317 -47782437 + MER4C LTR ERV1 2 362 -103 8275 149 35 45 chr15 37913403 37915249 -47780505 + MER4C-int LTR ERV1 3192 5670 -923 900 99 0 8 chr15 37915249 37915370 -47780384 - AluSg/x SINE Alu -10 300 181 3710 96 69 22 chr15 37915370 37915952 -47779802 + MER4C-int LTR ERV1 5236 5844 -487 325 167 26 13 chr15 37915961 37916039 -47779715 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 273 245 35 77 chr15 37916059 37916202 -47779552 + MER4C-int LTR ERV1 6291 6427 -171 694 270 5 25 chr15 37916208 37916408 -47779346 + MER4C-int LTR ERV1 6395 6590 -8 1354 203 86 92 chr15 37916415 37916883 -47778871 + MER4C LTR ERV1 1 465 0 249 342 52 52 chr15 37917172 37917327 -47778427 - MIR3 SINE MIR -51 157 3 303 93 0 0 chr15 37917495 37917538 -47778216 + (CA)n Simple_repeat Simple_repeat 2 44 0 186 103 0 0 chr15 37917538 37917567 -47778187 + (GA)n Simple_repeat Simple_repeat 1 29 0 32522 107 11 59 chr15 37918114 37924572 -47771182 - L1PA7 LINE L1 -1 6153 12 1212 196 60 105 chr15 37924645 37925027 -47770727 + MLT1A1 LTR MaLR 1 365 0 2083 161 19 16 chr15 37925142 37925509 -47770245 - L1MC1 LINE L1 0 6333 5966 2152 189 60 25 chr15 37926281 37926730 -47769024 + MLT1C LTR MaLR 3 467 0 471 258 38 15 chr15 37926736 37926868 -47768886 + L2 LINE L2 3179 3313 0 547 276 70 13 chr15 37926915 37927143 -47768611 - MIR SINE MIR -3 259 19 378 0 0 0 chr15 37927401 37927443 -47768311 + (TG)n Simple_repeat Simple_repeat 2 43 0 284 281 73 0 chr15 37927877 37927959 -47767795 + L2 LINE L2 3184 3271 -1 338 301 103 29 chr15 37928323 37928459 -47767295 - MER5A DNA MER1_type -37 152 7 1966 143 10 0 chr15 37930337 37930637 -47765117 - AluSx SINE Alu -7 305 3 1605 149 87 7 chr15 37932581 37932856 -47762898 - AluSx SINE Alu -14 298 2 315 313 52 9 chr15 37933187 37933302 -47762452 - MIR SINE MIR -117 145 26 1079 73 26 0 chr15 37934181 37934332 -47761422 + MER41B LTR ERV1 481 635 0 575 139 58 0 chr15 37934332 37934418 -47761336 + MER41B-int LTR ERV1 1 91 -5855 * 1668 80 14 0 chr15 37934414 37934627 -47761127 + MER41B-int LTR ERV1 5729 5944 -2 3331 136 41 9 chr15 37934627 37935158 -47760596 + MER41B LTR ERV1 1 548 -87 415 314 78 4 chr15 37935167 37935412 -47760342 + L1ME4a LINE L1 5652 5914 -207 245 186 207 43 chr15 37935680 37935820 -47759934 + L1ME LINE L1 5316 5478 -2330 299 258 0 0 chr15 37936068 37936134 -47759620 - LTR16A LTR ERVL -10 440 375 317 300 45 24 chr15 37936166 37936397 -47759357 - LTR16A LTR ERVL -171 286 25 1966 139 0 0 chr15 37936439 37936719 -47759035 - AluJb SINE Alu -9 303 24 378 284 98 44 chr15 37936902 37937127 -47758627 + L1ME LINE L1 5492 5728 -393 2174 104 16 7 chr15 37937434 37937743 -47758011 + AluSx SINE Alu 1 312 0 2229 120 0 0 chr15 37937751 37938059 -47757695 + AluSg SINE Alu 3 310 0 7339 35 2 0 chr15 37939080 37939936 -47755818 - L1PA5 LINE L1 0 6154 5297 4872 39 0 0 chr15 37939936 37940520 -47755234 + L1PA5 LINE L1 4723 5306 -840 2306 147 13 37 chr15 37940812 37941268 -47754486 + MLT2B3 LTR ERVL 1 469 -46 321 135 0 0 chr15 37941280 37941332 -47754422 + (CA)n Simple_repeat Simple_repeat 2 53 0 292 135 77 0 chr15 37941332 37941384 -47754370 + MLT2B3 LTR ERVL 465 520 0 1803 223 122 66 chr15 37941578 37942273 -47753481 - MER50 LTR ERV1 0 734 1 234 266 79 72 chr15 37942901 37943040 -47752714 - L2 LINE L2 -3 3310 3171 182 233 47 0 chr15 37944013 37944056 -47751698 - L2 LINE L2 0 3272 3228 695 246 174 0 chr15 37944189 37944384 -47751370 - MIR SINE MIR -21 241 13 243 0 0 0 chr15 37944644 37944671 -47751083 + (TG)n Simple_repeat Simple_repeat 2 28 0 7620 164 55 40 chr15 37945081 37946276 -47749478 + Charlie5 DNA MER1_type 25 1306 -1318 2195 78 0 0 chr15 37946276 37946546 -47749208 - L1PA6 LINE L1 0 6154 5885 7620 164 55 40 chr15 37946546 37947204 -47748550 + Charlie5 DNA MER1_type 1306 1952 -672 733 202 23 0 chr15 37947218 37947347 -47748407 + AluJo SINE Alu 2 133 -179 233 138 50 0 chr15 37947336 37947404 -47748350 + A-rich Low_complexity Low_complexity 2 60 0 * 838 192 0 62 chr15 37947416 37947593 -47748161 + AluJo SINE Alu 117 282 -30 381 113 0 0 chr15 37947611 37947664 -47748090 + L1MB1 LINE L1 6115 6167 -1 972 167 6 17 chr15 37947820 37948000 -47747754 - MER2 DNA MER2_type -135 210 33 * 2547 183 39 50 chr15 37947999 37948264 -47747490 + Charlie5 DNA MER1_type 1958 2224 -400 1822 161 20 10 chr15 37948264 37948562 -47747192 + AluSx SINE Alu 3 303 -9 2547 183 39 50 chr15 37948562 37948963 -47746791 + Charlie5 DNA MER1_type 2224 2617 -7 337 311 38 0 chr15 37948987 37949093 -47746661 + L2 LINE L2 3203 3312 -1 337 120 0 0 chr15 37949152 37949202 -47746552 - MER2 DNA MER2_type -183 162 113 279 290 97 0 chr15 37949204 37949328 -47746426 - L1ME LINE L1 -458 5663 5528 280 309 111 31 chr15 37949382 37949544 -47746210 + MIR SINE MIR 76 250 -12 21 36 0 0 chr15 37949837 37949865 -47745889 + AT_rich Low_complexity Low_complexity 1 28 0 710 147 149 18 chr15 37950035 37950238 -47745516 + MER33 DNA MER1_type 1 232 -92 22 0 0 0 chr15 37950289 37950311 -47745443 + AT_rich Low_complexity Low_complexity 1 22 0 1017 128 0 0 chr15 37950311 37950444 -47745310 - FLAM_C SINE Alu 0 133 1 1904 135 10 23 chr15 37950470 37950774 -47744980 - Tigger1 DNA MER2_type 0 2418 2119 * 4522 135 20 62 chr15 37950753 37951539 -47744215 - Tigger1 DNA MER2_type -1665 753 1 1131 280 72 10 chr15 37952007 37952411 -47743343 - LTR16B LTR ERVL 0 464 36 236 267 310 0 chr15 37952617 37952733 -47743021 + MIR SINE MIR 57 208 -54 684 298 137 12 chr15 37952936 37953278 -47742476 + L2 LINE L2 2928 3312 -1 239 325 43 26 chr15 37953810 37953927 -47741827 + L3 LINE CR1 1452 1570 -7 811 243 11 11 chr15 37954346 37954523 -47741231 + MIR3 SINE MIR 1 177 -31 485 222 123 37 chr15 37955530 37955692 -47740062 + MIR SINE MIR 57 232 -30 339 222 51 91 chr15 37957107 37957283 -47738471 - MIR SINE MIR -61 201 33 304 271 0 12 chr15 37957346 37957431 -47738323 + MIR SINE MIR 56 139 -123 186 43 0 0 chr15 37957433 37957456 -47738298 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 5702 157 15 3 chr15 37957464 37957959 -47737795 - L1MA5 LINE L1 -10 6290 5777 477 0 0 0 chr15 37957959 37958012 -47737742 + (TG)n Simple_repeat Simple_repeat 2 54 0 5702 157 15 3 chr15 37958012 37958467 -47737287 - L1MA5 LINE L1 -523 5777 5329 4354 185 30 7 chr15 37958467 37959368 -47736386 + L1 LINE L1 4212 5133 -1013 1249 198 0 0 chr15 37959368 37959580 -47736174 + AluJo SINE Alu 87 298 -14 14802 213 26 19 chr15 37959634 37964422 -47731332 + L1PA16 LINE L1 1992 6882 0 882 199 61 0 chr15 37964498 37964694 -47731060 + L1 LINE L1 5119 5326 -820 523 329 78 76 chr15 37964701 37964873 -47730881 + L2 LINE L2 2084 2254 -1060 1797 86 4 13 chr15 37964873 37965105 -47730649 - MER30 DNA MER1_type 0 230 1 523 329 78 76 chr15 37965105 37965601 -47730153 + L2 LINE L2 2254 2753 -561 4112 149 18 1 chr15 37965611 37965751 -47730003 - L1MB2 LINE L1 -23 6148 6009 2174 225 37 77 chr15 37965751 37966638 -47729116 - L1ME1 LINE L1 -165 6001 5175 319 279 14 95 chr15 37966852 37966902 -47728852 + L2 LINE L2 3178 3230 -83 783 211 79 49 chr15 37966902 37967167 -47728587 - ORSL DNA AcHobo -2 273 1 319 279 14 95 chr15 37967167 37967263 -47728491 + L2 LINE L2 3230 3312 -1 563 218 68 20 chr15 37967586 37967733 -47728021 - L1MA10 LINE L1 -2 6332 6179 * 1583 218 58 12 chr15 37967731 37968209 -47727545 - L1M4 LINE L1 -1409 4737 4213 2436 160 16 40 chr15 37969001 37969231 -47726523 - Tigger2a DNA MER2_type -2274 434 219 12290 147 12 3 chr15 37969231 37972059 -47723695 + L1PA11 LINE L1 3328 6166 -8 2436 160 16 40 chr15 37972059 37972273 -47723481 - Tigger2a DNA MER2_type -2489 219 1 1547 229 53 17 chr15 37973086 37973501 -47722253 + LTR16A LTR ERVL 21 450 0 322 164 0 0 chr15 37973501 37973556 -47722198 - MIR SINE MIR -61 147 93 538 267 44 32 chr15 37973557 37973774 -47721980 + MIR SINE MIR 27 242 -20 872 179 42 147 chr15 37973849 37974162 -47721592 - MER33 DNA MER1_type -9 354 39 818 253 137 22 chr15 37974585 37975145 -47720609 + L1ME4a LINE L1 5287 5923 -198 711 231 123 15 chr15 37975252 37975520 -47720234 - L1ME2 LINE L1 -10 6154 5858 2571 62 0 10 chr15 37975575 37975883 -47719871 - AluY SINE Alu -6 305 1 2149 121 0 0 chr15 37975888 37976178 -47719576 - AluSx SINE Alu -22 290 1 1676 244 73 23 chr15 37976374 37976891 -47718863 + REP3 LTR ERV 2 544 -18 1582 186 27 72 chr15 37976916 37977319 -47718435 - MLT1B LTR MaLR -5 385 1 386 265 49 81 chr15 37977742 37977927 -47717827 - MIR3 SINE MIR -29 179 1 2221 150 31 0 chr15 37978277 37978630 -47717124 - MER47A DNA MER2_type 0 366 3 249 33 0 0 chr15 37979523 37979553 -47716201 + (TC)n Simple_repeat Simple_repeat 2 31 0 465 287 66 89 chr15 37979635 37979893 -47715861 + L2 LINE L2 3020 3271 -1 451 182 169 26 chr15 37980922 37980983 -47714771 + MER5B DNA MER1_type 3 54 -124 2604 40 0 0 chr15 37980983 37981281 -47714473 + AluY SINE Alu 1 298 -13 451 182 169 26 chr15 37981281 37981373 -47714381 + MER5B DNA MER1_type 54 178 0 265 328 157 0 chr15 37981386 37981520 -47714234 + MIR SINE MIR 98 252 -10 1052 262 180 28 chr15 37981576 37982042 -47713712 - MER34 LTR ERV1 0 542 6 314 231 58 19 chr15 37982175 37982279 -47713475 - L1MA10 LINE L1 -2 6332 6225 25 31 0 0 chr15 37982512 37982544 -47713210 + AT_rich Low_complexity Low_complexity 1 32 0 2650 13 40 0 chr15 37982550 37982849 -47712905 + AluYa5 SINE Alu 1 311 0 204 236 174 38 chr15 37982898 37983050 -47712704 - MIR SINE MIR -73 189 10 408 316 75 27 chr15 37983602 37983789 -47711965 - MIR3 SINE MIR -12 196 1 291 253 155 90 chr15 37984537 37984904 -47710850 + MLT1J LTR MaLR 109 499 -12 462 308 65 22 chr15 37986596 37986781 -47708973 + MIR SINE MIR 20 212 -50 2376 117 15 63 chr15 37986892 37987286 -47708468 + THE1C LTR MaLR 1 375 0 262 182 34 125 chr15 37988465 37988553 -47707201 - MIR SINE MIR -65 143 68 208 260 52 26 chr15 37988680 37988757 -47706997 - MER5A DNA MER1_type -2 187 109 * 289 184 40 40 chr15 37988701 37988777 -47706977 + MER5B DNA MER1_type 25 100 -78 682 267 159 0 chr15 37988924 37989119 -47706635 + MIR SINE MIR 3 228 -34 424 273 85 59 chr15 37989393 37989664 -47706090 + L1ME3A LINE L1 4 281 -5838 621 306 82 44 chr15 37989827 37990390 -47705364 + L1ME3A LINE L1 496 1079 -5040 590 274 74 46 chr15 37990423 37990933 -47704821 + L1ME3A LINE L1 1149 1712 -4598 1350 270 48 81 chr15 37990938 37991927 -47703827 + L1ME3A LINE L1 5199 6145 -8 2030 132 16 7 chr15 37993625 37993928 -47701826 + AluSx SINE Alu 3 308 -4 242 279 244 65 chr15 37994126 37994327 -47701427 + MIR SINE MIR 8 244 -18 1243 210 18 15 chr15 37994449 37994721 -47701033 + MLT2C1 LTR ERVL 1 273 -124 945 225 51 21 chr15 37994777 37995013 -47700741 + MLT1B LTR MaLR 7 249 -141 244 109 31 141 chr15 37995039 37995103 -47700651 + MLT2B2 LTR ERVL 459 515 0 5735 215 60 32 chr15 37995104 37996622 -47699132 + L1MC3 LINE L1 6225 7785 0 887 236 20 10 chr15 37996628 37996831 -47698923 + MIR SINE MIR 58 262 0 265 208 99 69 chr15 37996906 37997007 -47698747 + Charlie7 DNA MER1_type 1 104 -2508 216 0 0 0 chr15 37997625 37997649 -47698105 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 286 289 138 31 chr15 37997670 37997829 -47697925 + MIR SINE MIR 37 212 -50 218 175 0 0 chr15 37997923 37997963 -47697791 + (CA)n Simple_repeat Simple_repeat 2 41 0 324 257 59 89 chr15 37997994 37998231 -47697523 - HAL1 LINE L1 -33 2474 2245 229 290 0 0 chr15 37998573 37998635 -47697119 + CT-rich Low_complexity Low_complexity 4 65 0 809 260 98 20 chr15 37998792 37999088 -47696666 - HAL1 LINE L1 -695 1812 1494 295 94 0 0 chr15 37999276 37999325 -47696429 - L1PA10 LINE L1 -1 6167 6124 1969 138 3 7 chr15 37999548 37999845 -47695909 + AluJb SINE Alu 1 296 -16 192 236 73 0 chr15 38001354 38001409 -47694345 - MIR SINE MIR -152 110 52 231 297 0 0 chr15 38002246 38002310 -47693444 - HAL1 LINE L1 -198 2309 2246 222 311 172 0 chr15 38002440 38002562 -47693192 - MIR SINE MIR -31 231 89 203 290 121 8 chr15 38003216 38003340 -47692414 - L2 LINE L2 0 3313 3176 216 100 0 25 chr15 38003696 38003736 -47692018 + (TTTTTG)n Simple_repeat Simple_repeat 6 44 0 248 226 103 75 chr15 38003775 38003866 -47691888 - HAL1 LINE L1 -1 2506 2408 2402 190 83 0 chr15 38003866 38004303 -47691451 + MLT2B1 LTR ERVL 1 483 -37 901 100 7 0 chr15 38004303 38004443 -47691311 + (TA)n Simple_repeat Simple_repeat 2 142 0 2402 190 83 0 chr15 38004443 38004485 -47691269 + MLT2B1 LTR ERVL 483 520 0 248 226 103 75 chr15 38004485 38004539 -47691215 - HAL1 LINE L1 -99 2408 2357 1046 246 78 74 chr15 38004583 38005080 -47690674 + MLT1H LTR MaLR 12 510 -39 2225 112 0 29 chr15 38005081 38005394 -47690360 + AluY SINE Alu 1 304 -7 286 178 0 68 chr15 38005409 38005482 -47690272 - HAL1 LINE L1 -204 2303 2236 2350 277 27 9 chr15 38005714 38006457 -47689297 - L1ME3A LINE L1 -5 6148 5393 1237 265 112 32 chr15 38006507 38007123 -47688631 - L1ME3A LINE L1 -1786 4343 3679 204 308 0 0 chr15 38008455 38008507 -47687247 + CT-rich Low_complexity Low_complexity 3 54 0 460 304 38 6 chr15 38008507 38008665 -47687089 - L1ME3A LINE L1 -5954 165 3 21 36 0 0 chr15 38009109 38009137 -47686617 + AT_rich Low_complexity Low_complexity 1 28 0 255 61 0 0 chr15 38009751 38009784 -47685970 + (CA)n Simple_repeat Simple_repeat 1 33 0 2090 116 10 0 chr15 38010498 38010791 -47684963 + AluSq SINE Alu 1 296 -17 226 250 0 15 chr15 38010791 38010859 -47684895 - L1MC4 LINE L1 -1336 6706 6640 234 194 0 0 chr15 38010886 38010953 -47684801 + (TA)n Simple_repeat Simple_repeat 1 67 0 504 32 0 0 chr15 38010961 38011023 -47684731 + (CA)n Simple_repeat Simple_repeat 2 63 0 271 263 72 77 chr15 38011047 38011241 -47684513 - MLT1J LTR MaLR -30 481 289 338 245 74 42 chr15 38011316 38011486 -47684268 - MLT1J LTR MaLR -298 180 5 697 191 15 37 chr15 38011544 38011680 -47684074 - FLAM_A SINE Alu 0 133 1 309 166 29 101 chr15 38012451 38012590 -47683164 - L1MEc LINE L1 -3103 3112 2984 374 192 16 80 chr15 38012635 38012693 -47683061 - L1ME3A LINE L1 -10 6160 6113 2024 87 0 19 chr15 38012693 38012958 -47682796 + AluSc SINE Alu 44 303 -6 374 192 16 80 chr15 38012958 38013024 -47682730 - L1ME3A LINE L1 -57 6113 6044 600 261 130 46 chr15 38013028 38013550 -47682204 - L1MEc LINE L1 -4092 2304 1739 180 0 0 0 chr15 38013567 38013587 -47682167 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1950 120 0 21 chr15 38013589 38013873 -47681881 - AluSx SINE Alu -32 280 3 248 246 15 0 chr15 38014144 38014209 -47681545 - L1ME3A LINE L1 -61 6109 6044 600 261 130 46 chr15 38014213 38014735 -47681019 - L1MEd LINE L1 -4092 2304 1739 180 0 0 0 chr15 38014752 38014772 -47680982 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 2062 105 0 21 chr15 38014774 38015060 -47680694 - AluSx SINE Alu -32 280 1 467 222 97 35 chr15 38016037 38016181 -47679573 - LTR41 LTR ERVL -110 663 511 508 244 153 16 chr15 38016359 38016601 -47679153 - LTR41 LTR ERVL -498 275 1 560 279 82 41 chr15 38016617 38017286 -47678468 - L1MEd LINE L1 -738 1838 1028 418 219 144 109 chr15 38017731 38017987 -47677767 - LTR41 LTR ERVL -6 767 503 716 230 40 6 chr15 38018196 38018370 -47677384 - LTR41 LTR ERVL -588 185 6 787 321 41 6 chr15 38018444 38018787 -47676967 - L1MEd LINE L1 -5718 487 133 1854 175 7 0 chr15 38018876 38019185 -47676569 - AluJo SINE Alu -1 311 1 2147 149 28 50 chr15 38020264 38020661 -47675093 + MLT1B LTR MaLR 1 388 -2 1010 175 97 5 chr15 38022169 38022386 -47673368 - L1MB3 LINE L1 -2 6181 5945 2518 49 0 0 chr15 38022398 38022683 -47673071 - AluY SINE Alu -13 298 14 696 251 47 19 chr15 38022695 38022979 -47672775 - L1MD2 LINE L1 -55 6111 5808 318 312 47 42 chr15 38023107 38023322 -47672432 - L1ME2 LINE L1 -223 5947 5732 394 194 65 0 chr15 38023610 38023765 -47671989 + GA-rich Low_complexity Low_complexity 4 168 0 561 225 14 86 chr15 38025064 38025172 -47670582 - MER112 DNA MER1_type -7 253 166 207 0 0 0 chr15 38025172 38025195 -47670559 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 561 225 14 86 chr15 38025195 38025295 -47670459 - MER112 DNA MER1_type -94 166 60 225 129 0 0 chr15 38025298 38025329 -47670425 - LTR16A1 LTR ERVL 0 457 427 402 214 175 49 chr15 38025365 38025650 -47670104 - LTR16A1 LTR ERVL -96 361 41 257 229 174 21 chr15 38026451 38026595 -47669159 - L2 LINE L2 -6 3307 3142 680 253 117 36 chr15 38026699 38026980 -47668774 + MLT1I LTR MaLR 106 409 0 186 292 0 0 chr15 38027065 38027113 -47668641 - L2 LINE L2 -257 3056 3009 211 250 62 38 chr15 38027219 38027299 -47668455 - MIR SINE MIR -161 101 20 436 197 128 0 chr15 38027318 38027435 -47668319 - MER96 DNA MER1_type? -19 156 25 425 272 114 0 chr15 38027436 38027550 -47668204 + MER96 DNA MER1_type? 49 175 0 190 241 44 117 chr15 38027999 38028109 -47667645 - MIR SINE MIR -14 248 148 2758 94 0 0 chr15 38028109 38028461 -47667293 - THE1A LTR MaLR 0 355 4 190 241 44 117 chr15 38028461 38028487 -47667267 - MIR SINE MIR -114 148 122 27 29 0 0 chr15 38028908 38028942 -47666812 + AT_rich Low_complexity Low_complexity 1 34 0 2464 210 98 23 chr15 38028952 38029229 -47666525 - L1ME1 LINE L1 -80 6104 5849 1476 189 15 109 chr15 38029229 38029632 -47666122 + MLT1A1 LTR MaLR 1 365 0 2464 210 98 23 chr15 38029632 38030088 -47665666 - L1ME1 LINE L1 -335 5849 5310 1125 169 5 0 chr15 38030094 38030278 -47665476 - AluSg/x SINE Alu -7 305 121 1122 210 41 24 chr15 38031116 38031411 -47664343 - MLT1D LTR MaLR 0 505 206 1680 223 120 41 chr15 38031467 38032168 -47663586 - HAL1 LINE L1 -909 1598 843 1608 269 59 18 chr15 38032196 38032758 -47662996 - HAL1 LINE L1 -1827 680 96 1900 200 101 24 chr15 38032833 38033297 -47662457 - MLT1D LTR MaLR 0 505 6 1577 208 49 59 chr15 38033556 38034027 -47661727 + MLT1C LTR MaLR 1 466 -1 350 305 106 0 chr15 38034220 38034361 -47661393 - MIR SINE MIR -8 254 99 1144 119 149 5 chr15 38036140 38036341 -47659413 - MER30 DNA MER1_type 0 230 1 250 263 158 0 chr15 38036449 38036525 -47659229 + MIR3 SINE MIR 114 201 -7 217 190 0 114 chr15 38036992 38037071 -47658683 + MIR SINE MIR 65 134 -128 295 265 29 10 chr15 38037092 38037194 -47658560 - MER5A DNA MER1_type -22 167 64 2178 107 10 3 chr15 38037206 38037515 -47658239 - L1PB1 LINE L1 -12 6139 5829 2796 210 0 0 chr15 38037516 38038087 -47657667 + L1 LINE L1 4434 5004 -1142 2146 116 0 3 chr15 38039010 38039304 -47656450 - AluSx SINE Alu -19 293 1 1202 252 101 21 chr15 38039306 38039734 -47656020 + MER74A LTR ERVL 12 473 -85 890 177 88 70 chr15 38040302 38040517 -47655237 - MER20 DNA MER1_type 0 219 1 182 259 69 0 chr15 38041116 38041174 -47654580 + MER5A DNA MER1_type 29 90 -99 280 267 13 0 chr15 38042834 38042909 -47652845 - MLT2E LTR ERVL -1 627 552 1325 295 131 4 chr15 38042909 38043435 -47652319 - MLT2E LTR ERVL -35 593 1 419 308 58 17 chr15 38044398 38044570 -47651184 - MIR SINE MIR 0 262 84 453 273 86 5 chr15 38044608 38044795 -47650959 + MIR SINE MIR 49 250 -12 1806 41 0 0 chr15 38045604 38045822 -47649932 + L1PA4 LINE L1 5938 6155 0 228 296 16 56 chr15 38046026 38046151 -47649603 + MIR SINE MIR 87 206 -56 790 287 13 4 chr15 38046540 38046770 -47648984 + MIR SINE MIR 10 241 -21 2157 105 3 20 chr15 38047188 38047494 -47648260 - AluSx SINE Alu -11 301 1 470 290 32 74 chr15 38048796 38048987 -47646767 - MIR SINE MIR -27 235 52 1484 141 7 44 chr15 38048987 38049257 -47646497 - L1MB8 LINE L1 -3 6175 5916 470 290 32 74 chr15 38049257 38049282 -47646472 - MIR SINE MIR -210 52 28 228 67 0 0 chr15 38050081 38050111 -47645643 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 802 127 21 7 chr15 38050232 38050374 -47645380 - MER9 LTR ERVK 0 511 368 228 67 0 0 chr15 38051019 38051049 -47644705 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 3436 118 11 36 chr15 38051170 38051377 -47644377 - MER9 LTR ERVK 0 511 300 2452 82 0 0 chr15 38051377 38051680 -47644074 - AluY SINE Alu -8 303 1 3436 118 11 36 chr15 38051680 38051996 -47643758 - MER9 LTR ERVK -211 300 1 333 0 0 0 chr15 38052254 38052291 -47643463 + (CA)n Simple_repeat Simple_repeat 1 37 0 2444 133 37 7 chr15 38052712 38053117 -47642637 - MSTA LTR MaLR -11 417 1 224 299 21 21 chr15 38053259 38053356 -47642398 + MIR SINE MIR 166 262 0 219 36 0 0 chr15 38053592 38053620 -47642134 + (TG)n Simple_repeat Simple_repeat 2 29 0 1951 132 54 0 chr15 38054366 38054662 -47641092 - AluSx SINE Alu 0 312 1 359 267 92 17 chr15 38054801 38054921 -47640833 - MIR3 SINE MIR -9 199 71 409 284 172 45 chr15 38055288 38055707 -47640047 - HAL1 LINE L1 0 2507 2036 1046 280 116 7 chr15 38055773 38056237 -47639517 - HAL1 LINE L1 -590 1917 1403 597 301 97 28 chr15 38056299 38056515 -47639239 + MIR SINE MIR 11 241 -21 324 300 30 10 chr15 38057387 38057487 -47638267 + MIR SINE MIR 21 122 -140 406 207 284 0 chr15 38057551 38057667 -47638087 + MIR SINE MIR 114 262 0 920 270 45 51 chr15 38057668 38058201 -47637553 - HAL1 LINE L1 -1190 1317 788 229 326 0 23 chr15 38058573 38058659 -47637095 - HAL1 LINE L1 -1988 519 436 318 221 0 93 chr15 38058839 38058925 -47636829 - HAL1 LINE L1 -2334 173 96 898 140 65 48 chr15 38059345 38059531 -47636223 + MER53 DNA DNA 1 189 0 347 228 22 0 chr15 38060852 38060944 -47634810 + MER81 DNA DNA 20 113 -1 318 293 138 24 chr15 38061985 38062152 -47633602 + MIR SINE MIR 26 211 -51 21 0 0 0 chr15 38064096 38064117 -47631637 + AT_rich Low_complexity Low_complexity 1 21 0 2287 103 0 3 chr15 38064117 38064417 -47631337 + AluSg SINE Alu 1 299 -11 211 265 0 0 chr15 38064583 38064632 -47631122 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 274 261 31 77 chr15 38064971 38065166 -47630588 + LTR67 LTR ERVL 364 549 -8 381 309 29 59 chr15 38066514 38066718 -47629036 - MLT1K LTR MaLR -193 395 198 277 271 14 14 chr15 38066857 38066927 -47628827 - L2 LINE L2 -11 3302 3233 957 259 159 5 chr15 38067341 38067712 -47628042 - LTR16A LTR ERVL -5 445 18 253 339 0 28 chr15 38067729 38067838 -47627916 + MIR3 SINE MIR 93 198 -10 536 233 31 0 chr15 38067920 38068049 -47627705 + L1MC4 LINE L1 5809 5941 -1867 405 0 0 0 chr15 38068049 38068094 -47627660 + (TG)n Simple_repeat Simple_repeat 2 46 0 24 0 0 0 chr15 38068203 38068227 -47627527 + AT_rich Low_complexity Low_complexity 1 24 0 7514 215 62 29 chr15 38068289 38068353 -47627401 + L1PA16 LINE L1 3722 3782 -2384 2120 107 24 0 chr15 38068353 38068478 -47627276 + AluSq SINE Alu 1 122 -191 225 65 0 0 chr15 38068478 38068509 -47627245 + (CA)n Simple_repeat Simple_repeat 2 32 0 2120 107 24 0 chr15 38068509 38068674 -47627080 + AluSq SINE Alu 122 298 -15 7514 215 62 29 chr15 38068674 38071282 -47624472 + L1PA16 LINE L1 3782 6302 136 1734 104 133 4 chr15 38071282 38071552 -47624202 + AluSg SINE Alu 1 305 -5 7514 215 62 29 chr15 38071552 38073140 -47622614 + L1PA16 LINE L1 6301 6164 -2 2878 118 49 0 chr15 38071724 38072132 -47623622 + MSTA LTR MaLR 1 428 0 1743 238 84 124 chr15 38072132 38072229 -47623525 + L1MC4 LINE L1 6833 6932 -1110 2570 68 0 0 chr15 38072229 38072538 -47623216 - AluY SINE Alu -2 309 1 1743 238 84 124 chr15 38072538 38073575 -47622179 + L1MC4 LINE L1 6932 7911 -131 354 143 0 0 chr15 38073599 38073662 -47622092 + (TAGA)n Simple_repeat Simple_repeat 1 63 0 386 195 73 41 chr15 38073668 38073791 -47621963 + L1MC4 LINE L1 7916 8042 0 190 420 15 15 chr15 38073812 38073943 -47621811 - MIR3 SINE MIR -13 195 65 315 219 110 12 chr15 38075385 38075467 -47620287 + Charlie8 DNA MER1_type 103 192 -2225 244 310 134 7 chr15 38075705 38075847 -47619907 - MIR SINE MIR -54 208 49 293 259 30 82 chr15 38076006 38076141 -47619613 + MIR3 SINE MIR 69 196 -12 473 243 41 99 chr15 38076453 38076698 -47619056 - MIR3 SINE MIR -11 251 49 388 321 48 37 chr15 38076805 38077141 -47618613 - L3 LINE CR1 -2 1575 1119 410 193 48 105 chr15 38077141 38077344 -47618410 + MLT1H LTR MaLR 19 257 -292 2495 94 0 0 chr15 38077344 38077653 -47618101 + AluSg SINE Alu 1 309 -1 410 193 48 105 chr15 38077653 38077688 -47618066 + MLT1H LTR MaLR 257 292 -257 356 83 0 0 chr15 38077788 38077836 -47617918 - MLT2A1 LTR ERVL -7 437 390 217 269 15 0 chr15 38077836 38077903 -47617851 + (TA)n Simple_repeat Simple_repeat 1 68 0 300 146 0 0 chr15 38077903 38077951 -47617803 - MLT2A2 LTR ERVL 0 453 406 * 369 62 0 0 chr15 38077945 38077993 -47617761 + MLT2A2 LTR ERVL 406 453 0 334 228 103 53 chr15 38077994 38078171 -47617583 - MLT1E2 LTR MaLR -13 542 358 351 0 0 0 chr15 38078193 38078232 -47617522 + (TA)n Simple_repeat Simple_repeat 2 40 0 2721 90 3 0 chr15 38078364 38078718 -47617036 - MLT2A1 LTR ERVL -89 355 1 16528 66 6 2 chr15 38078718 38081812 -47613942 - HERVL-A1 LTR ERVL 0 5654 1590 1385 73 0 0 chr15 38081789 38081967 -47613787 - HERVL LTR ERVL -5476 178 1 * 2154 127 56 12 chr15 38081967 38082307 -47613447 - THE1A LTR MaLR 0 355 1 593 335 129 49 chr15 38082464 38082614 -47613140 - L3 LINE CR1 -609 968 832 2352 66 0 60 chr15 38082614 38082932 -47612822 - AluY SINE Alu -12 299 1 593 335 129 49 chr15 38082932 38083376 -47612378 - L3 LINE CR1 -745 832 326 724 279 60 17 chr15 38083435 38083668 -47612086 + MIR SINE MIR 20 262 0 32 43 0 0 chr15 38084899 38084945 -47610809 + AT_rich Low_complexity Low_complexity 1 46 0 220 267 0 17 chr15 38085026 38085086 -47610668 + CT-rich Low_complexity Low_complexity 3 61 0 23 0 0 0 chr15 38085375 38085398 -47610356 + AT_rich Low_complexity Low_complexity 1 23 0 232 311 129 0 chr15 38085511 38085643 -47610111 - L1MC/D LINE L1 -2048 5760 5612 572 237 15 0 chr15 38085719 38085850 -47609904 - L1MB7 LINE L1 -16 6404 6272 4057 180 22 33 chr15 38085944 38086802 -47608952 - L1MB7 LINE L1 -146 6274 5439 2069 133 7 3 chr15 38086802 38087110 -47608644 - AluSx SINE Alu -3 309 1 4057 180 22 33 chr15 38087110 38087756 -47607998 - L1MB7 LINE L1 -981 5439 4787 531 213 37 22 chr15 38087756 38087912 -47607842 - MLT1D LTR MaLR 0 505 240 * 943 289 9 33 chr15 38087887 38088216 -47607538 - MLT1E2 LTR MaLR -305 321 1 877 205 30 34 chr15 38088750 38089013 -47606741 - L1MB7 LINE L1 -1589 4793 4532 1510 220 17 6 chr15 38089073 38089419 -47606335 - L1MB7 LINE L1 -4512 1872 1523 1197 254 11 37 chr15 38089427 38089778 -47605976 - L1ME2 LINE L1 -15 6149 5808 * 40947 69 3 11 chr15 38089762 38095964 -47599790 - L1PA5 LINE L1 0 6154 4 2274 223 74 58 chr15 38095969 38097201 -47598553 - L1ME2 LINE L1 -342 5822 4571 478 280 176 5 chr15 38097524 38097717 -47598037 - MIR SINE MIR -36 226 1 476 176 165 0 chr15 38098735 38098826 -47596928 + FLAM_A SINE Alu 1 106 -36 1147 188 21 71 chr15 38098866 38099206 -47596548 + L1MC5 LINE L1 7606 7928 -33 341 286 152 0 chr15 38099496 38099601 -47596153 - MIR SINE MIR -106 156 36 800 267 202 23 chr15 38099608 38100254 -47595500 - L2 LINE L2 -3 3310 2508 376 224 26 0 chr15 38100477 38100553 -47595201 - MER81 DNA DNA -36 78 1 294 271 82 8 chr15 38100564 38100686 -47595068 + MIR SINE MIR 51 181 -81 258 244 12 49 chr15 38101225 38101307 -47594447 - ORSL DNA AcHobo -196 79 1 182 118 29 0 chr15 38101480 38101514 -47594240 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 279 0 0 0 chr15 38101869 38101900 -47593854 + (CA)n Simple_repeat Simple_repeat 2 32 0 228 35 0 0 chr15 38102159 38102188 -47593566 + (TG)n Simple_repeat Simple_repeat 2 30 0 1092 160 22 0 chr15 38102921 38103102 -47592652 - MER20 DNA MER1_type 0 219 35 253 234 62 0 chr15 38103239 38103303 -47592451 - MER5B DNA MER1_type -5 173 106 253 195 0 78 chr15 38103286 38103363 -47592391 + MER5B DNA MER1_type 108 178 0 406 287 23 16 chr15 38104077 38104206 -47591548 + MIR SINE MIR 83 212 -50 1049 156 117 54 chr15 38108466 38108671 -47587083 - MER20 DNA MER1_type -1 218 1 251 295 63 21 chr15 38108684 38108779 -47586975 + L2 LINE L2 3149 3247 -25 * 406 259 60 0 chr15 38108778 38108894 -47586860 - L2 LINE L2 0 3313 3191 202 333 0 0 chr15 38109509 38109566 -47586188 + L2 LINE L2 3254 3310 -3 180 77 0 0 chr15 38109760 38109786 -47585968 + (TC)n Simple_repeat Simple_repeat 2 27 0 252 0 0 0 chr15 38109788 38109816 -47585938 + (CA)n Simple_repeat Simple_repeat 1 28 0 307 256 51 0 chr15 38110436 38110514 -47585240 - MIR SINE MIR -179 83 2 247 329 58 0 chr15 38110805 38110960 -47584794 + L1ME LINE L1 5574 5737 -384 1889 152 110 3 chr15 38111105 38111415 -47584339 + MER2 DNA MER2_type 1 343 -1 790 300 73 0 chr15 38111547 38111780 -47583974 - MIR SINE MIR 0 262 13 33 25 0 0 chr15 38111793 38111833 -47583921 + AT_rich Low_complexity Low_complexity 1 40 0 205 273 36 0 chr15 38112030 38112085 -47583669 + L2 LINE L2 3257 3313 0 1812 114 24 4 chr15 38112453 38112708 -47583046 + AluSg SINE Alu 37 296 -14 1594 180 4 0 chr15 38112821 38113088 -47582666 - AluJo SINE Alu -44 268 1 464 304 43 14 chr15 38113159 38113366 -47582388 - MIR SINE MIR -37 225 13 183 367 0 0 chr15 38113381 38113441 -47582313 + L2 LINE L2 3243 3302 -11 1861 145 19 22 chr15 38115009 38115320 -47580434 - AluJo SINE Alu -2 310 1 485 314 38 6 chr15 38115470 38115629 -47580125 - MIR3 SINE MIR -25 183 20 645 292 116 17 chr15 38116983 38117216 -47578538 - MIR SINE MIR 0 262 7 21 36 0 0 chr15 38117269 38117297 -47578457 + AT_rich Low_complexity Low_complexity 1 28 0 363 44 0 0 chr15 38117440 38117485 -47578269 + (ATG)n Simple_repeat Simple_repeat 2 46 0 2238 85 14 3 chr15 38117933 38118228 -47577526 + AluSq SINE Alu 1 298 -15 1001 119 0 0 chr15 38118228 38118362 -47577392 + AluSg/x SINE Alu 134 267 -45 180 0 0 0 chr15 38118366 38118386 -47577368 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2223 116 7 0 chr15 38118617 38118910 -47576844 + AluSc SINE Alu 1 295 -14 182 319 14 42 chr15 38119173 38119245 -47576509 + MIR3 SINE MIR 3 72 -136 450 253 0 0 chr15 38120658 38120741 -47575013 + AluJb SINE Alu 202 284 -28 2048 128 0 30 chr15 38120989 38121293 -47574461 + AluJb SINE Alu 1 295 -17 2114 122 13 10 chr15 38121295 38121606 -47574148 + AluSx SINE Alu 1 312 0 320 268 93 60 chr15 38121654 38121837 -47573917 + MIR SINE MIR 46 234 -28 280 311 67 50 chr15 38122294 38122474 -47573280 + MIR SINE MIR 49 231 -31 818 220 136 62 chr15 38122795 38122934 -47572820 + MER102b DNA MER1_type 1 128 -1300 573 133 11 0 chr15 38122934 38123024 -47572730 - L1MD1 LINE L1 -1 6241 6151 818 220 136 62 chr15 38123024 38123193 -47572561 + MER102b DNA MER1_type 128 332 -9 203 358 29 44 chr15 38123372 38123509 -47572245 + L2 LINE L2 3133 3267 -5 268 304 36 9 chr15 38123660 38123772 -47571982 + L1MC4a LINE L1 5812 5926 -1882 1006 269 165 3 chr15 38126337 38126646 -47569108 - MLT1G1 LTR MaLR 0 595 237 808 365 78 9 chr15 38126741 38127163 -47568591 - L3 LINE CR1 -60 1517 1067 339 145 0 53 chr15 38128683 38128759 -47566995 - LTR49 LTR ERV1 -68 527 456 5860 155 26 32 chr15 38128871 38129950 -47565804 + L1MA4 LINE L1 5212 6299 -1 257 291 0 0 chr15 38130318 38130373 -47565381 + L2 LINE L2 3214 3268 -4 542 262 30 91 chr15 38130751 38131014 -47564740 - MIR SINE MIR 0 262 16 1031 211 0 0 chr15 38132040 38132220 -47563534 + LTR32 LTR ERVL 172 351 -120 22 0 0 0 chr15 38137114 38137136 -47558618 + AT_rich Low_complexity Low_complexity 1 22 0 376 308 8 0 chr15 38138591 38138708 -47557046 + MER102a DNA MER1_type 186 303 -27 510 282 153 5 chr15 38139191 38139407 -47556347 - MIR SINE MIR 0 262 15 561 164 77 0 chr15 38140452 38140556 -47555198 - MER103 DNA DNA -43 123 12 267 190 0 0 chr15 38140856 38140914 -47554840 + (TG)n Simple_repeat Simple_repeat 2 59 0 270 236 137 15 chr15 38140951 38141085 -47554669 - L1ME LINE L1 -232 5889 5740 1240 281 83 41 chr15 38142027 38143041 -47552713 + L1MEd LINE L1 574 1725 -765 21 0 0 0 chr15 38143268 38143289 -47552465 + AT_rich Low_complexity Low_complexity 1 21 0 1996 121 57 0 chr15 38143295 38143577 -47552177 - AluSx SINE Alu -14 298 1 2396 99 0 10 chr15 38143751 38144064 -47551690 - AluSg SINE Alu 0 310 1 370 337 58 0 chr15 38144305 38144563 -47551191 + L1ME LINE L1 4777 5049 -1097 21 0 0 0 chr15 38144584 38144605 -47551149 + AT_rich Low_complexity Low_complexity 1 21 0 623 290 89 32 chr15 38144620 38145022 -47550732 + L1ME LINE L1 5297 5720 -412 22 70 0 0 chr15 38145146 38145189 -47550565 + AT_rich Low_complexity Low_complexity 1 43 0 386 236 188 14 chr15 38145239 38145383 -47550371 + MIR SINE MIR 5 173 -89 480 341 111 40 chr15 38151892 38152826 -47542928 - L2 LINE L2 0 3313 2303 328 323 8 31 chr15 38153237 38153364 -47542390 - L2 LINE L2 -1 3312 3189 258 174 43 0 chr15 38154120 38154166 -47541588 - MER5A DNA MER1_type -73 116 69 2220 105 6 19 chr15 38154773 38155087 -47540667 + AluSx SINE Alu 1 310 -2 390 221 61 8 chr15 38155223 38155354 -47540400 - L1MC4a LINE L1 -1983 5825 5688 556 301 105 43 chr15 38155536 38155974 -47539780 - L1MC4a LINE L1 -743 5403 4939 395 333 42 42 chr15 38156150 38156462 -47539292 - L1MC4a LINE L1 -1586 4560 4249 2288 95 0 7 chr15 38156552 38156846 -47538908 + AluY SINE Alu 1 292 -19 41010 32 21 1 chr15 38157038 38163068 -47532686 - L1PA2 LINE L1 0 6155 1 321 273 87 57 chr15 38163111 38163477 -47532277 - L1MC4a LINE L1 -2181 3965 3589 302 293 17 26 chr15 38163713 38163829 -47531925 - L1MC4a LINE L1 -2845 3301 3187 1691 226 107 48 chr15 38163875 38164207 -47531547 + MLT2F LTR ERVL 46 424 -239 1576 189 54 24 chr15 38164207 38164540 -47531214 + MER61A LTR ERV1 1 343 0 1691 226 107 48 chr15 38164540 38164750 -47531004 + MLT2F LTR ERVL 424 620 -43 303 279 86 14 chr15 38164868 38165008 -47530746 - L1MC4a LINE L1 -3733 2413 2264 963 123 130 0 chr15 38165149 38165311 -47530443 - AluSg/x SINE Alu -3 307 125 1074 278 82 41 chr15 38165995 38166829 -47528925 + L1ME3A LINE L1 5086 5949 -221 206 371 34 41 chr15 38167149 38167184 -47528570 + L2 LINE L2 2689 2723 -591 2253 114 0 0 chr15 38167184 38167501 -47528253 - AluSq SINE Alu 0 313 1 206 371 34 41 chr15 38167501 38167756 -47527998 + L2 LINE L2 2723 2977 -337 1347 38 0 0 chr15 38168020 38168180 -47527574 + L1PA3 LINE L1 5996 6155 0 2090 133 10 0 chr15 38168852 38169145 -47526609 - AluSx SINE Alu -16 296 1 349 348 17 0 chr15 38169189 38169307 -47526447 - MIR SINE MIR -61 147 28 26 0 0 0 chr15 38170442 38170468 -47525286 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr15 38171190 38171221 -47524533 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr15 38171313 38171334 -47524420 + AT_rich Low_complexity Low_complexity 1 21 0 273 292 85 46 chr15 38171341 38171471 -47524283 - L2 LINE L2 0 3272 3138 227 342 103 54 chr15 38171641 38171794 -47523960 - MIR3 SINE MIR 0 208 43 2169 136 0 3 chr15 38171794 38172103 -47523651 - AluSg SINE Alu -2 308 1 227 342 103 54 chr15 38172103 38172133 -47523621 - MIR3 SINE MIR -165 43 16 597 294 15 30 chr15 38173379 38173580 -47522174 + MIR SINE MIR 8 205 -57 183 80 0 0 chr15 38173757 38173782 -47521972 + (ATTAG)n Simple_repeat Simple_repeat 4 28 0 318 149 0 40 chr15 38173984 38174058 -47521696 + MER88 LTR ERVL 79 149 -315 * 1078 249 43 77 chr15 38174008 38174141 -47521613 - MER74B LTR ERVL -82 540 404 1788 145 3 40 chr15 38174141 38174444 -47521310 - AluJo SINE Alu -16 296 5 1078 249 43 77 chr15 38174444 38174801 -47520953 - MER74B LTR ERVL -218 404 67 269 364 62 6 chr15 38174809 38174971 -47520783 - MIR SINE MIR -58 204 34 4473 69 41 0 chr15 38174975 38175556 -47520198 + LTR14B LTR ERVK 4 608 0 204 394 31 19 chr15 38176227 38176387 -47519367 + L2 LINE L2 2350 2511 -803 1834 204 148 0 chr15 38176763 38177203 -47518551 - MLT1D LTR MaLR 0 505 1 1677 184 3 3 chr15 38178051 38178387 -47517367 + AluJb SINE Alu 1 336 0 259 366 91 7 chr15 38178899 38179186 -47516568 + L2 LINE L2 2365 2675 -639 1079 291 59 18 chr15 38179399 38179788 -47515966 + LTR16C LTR ERVL 87 491 0 403 354 27 42 chr15 38180228 38180488 -47515266 + L2 LINE L2 2804 3059 -213 2072 132 4 0 chr15 38180735 38181041 -47514713 + AluSx SINE Alu 1 307 0 1057 196 0 16 chr15 38182034 38182223 -47513531 - AluJo SINE Alu -125 187 2 670 293 22 0 chr15 38182413 38182594 -47513160 - MIR SINE MIR -50 212 28 1477 184 10 35 chr15 38183281 38183589 -47512165 + AluJb SINE Alu 1 301 0 1262 238 38 30 chr15 38183602 38183968 -47511786 + L1MB7 LINE L1 6 374 -6168 * 3959 209 40 18 chr15 38183963 38185120 -47510634 + L1MB7 LINE L1 690 1875 -4771 1134 207 61 23 chr15 38185220 38185742 -47510012 + L1MB7 LINE L1 2308 2846 -3798 1686 190 11 25 chr15 38185742 38186085 -47509669 + MLT1A1 LTR MaLR 1 478 -27 1567 242 36 13 chr15 38186590 38187115 -47508639 + L1MB7 LINE L1 2841 3377 -3267 647 130 17 9 chr15 38187123 38187238 -47508516 - L1PA16 LINE L1 -8 6158 6043 1546 145 52 50 chr15 38187347 38187775 -47507979 + L1PA8A LINE L1 5498 5879 -252 * 4481 207 65 21 chr15 38187768 38188366 -47507388 + L1MB7 LINE L1 3362 3933 -2711 262 0 53 0 chr15 38188366 38188404 -47507350 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 4481 207 65 21 chr15 38188404 38189209 -47506545 + L1MB7 LINE L1 3933 4826 -1818 824 48 10 0 chr15 38189209 38189312 -47506442 + AluY SINE Alu 1 104 -207 1405 91 0 5 chr15 38189412 38189599 -47506155 + AluY SINE Alu 111 296 -15 3794 188 60 19 chr15 38189599 38190717 -47505037 + L1MB7 LINE L1 4819 6035 -647 2564 116 3 13 chr15 38190717 38191096 -47504658 + THE1C LTR MaLR 1 375 0 3794 188 60 19 chr15 38191096 38191751 -47504003 + L1MB7 LINE L1 6035 6661 -21 359 276 105 0 chr15 38192371 38192476 -47503278 + MIR3 SINE MIR 67 182 -26 992 264 34 4 chr15 38192494 38192729 -47503025 + MIR SINE MIR 21 262 0 2368 86 3 3 chr15 38192964 38193267 -47502487 - AluY SINE Alu -8 303 1 367 130 29 0 chr15 38193675 38193744 -47502010 - MER69 DNA AcHobo -9 2517 2447 1137 260 103 32 chr15 38193752 38194560 -47501194 - L1MEd LINE L1 -981 5148 4284 1784 273 88 13 chr15 38194716 38195626 -47500128 - L1MEd LINE L1 -2075 4054 3077 475 299 69 13 chr15 38195715 38195958 -47499796 - MLT1H1 LTR MaLR -252 297 1 947 293 49 17 chr15 38195959 38196631 -47499123 - L1ME LINE L1 -467 5695 5004 343 253 123 13 chr15 38196786 38197015 -47498739 - L1 LINE L1 -1155 6410 6152 240 280 39 9 chr15 38197027 38197259 -47498495 - L1MEd LINE L1 -3123 3006 2768 385 288 81 81 chr15 38197319 38197604 -47498150 - L1MEd LINE L1 -3550 2579 2295 283 273 99 43 chr15 38197635 38197939 -47497815 - L1MEd LINE L1 -4895 1224 904 23 78 0 0 chr15 38197942 38197993 -47497761 + AT_rich Low_complexity Low_complexity 1 51 0 183 271 0 0 chr15 38198040 38198110 -47497644 + (TA)n Simple_repeat Simple_repeat 1 70 0 260 270 60 10 chr15 38198203 38198303 -47497451 + Tigger3(Golem) DNA MER2_type 3 2797 -232 2865 196 62 7 chr15 38198303 38199188 -47496566 - L1 LINE L1 -3283 4282 3356 1335 237 63 6 chr15 38199173 38199536 -47496218 - L1MC4 LINE L1 -176 7866 7483 * 245 271 24 12 chr15 38199869 38199954 -47495800 + L2 LINE L2 1882 1967 -1347 2024 168 69 11 chr15 38200016 38200450 -47495304 - L1MB8 LINE L1 -2 6176 5718 214 333 88 35 chr15 38200876 38200990 -47494764 + L2 LINE L2 3138 3257 -15 963 252 75 49 chr15 38201528 38202029 -47493725 + L1MC5 LINE L1 7268 7790 -171 2249 88 27 0 chr15 38202029 38202324 -47493430 + AluSg SINE Alu 1 303 -7 963 252 75 49 chr15 38202324 38202449 -47493305 + L1MC5 LINE L1 7790 7910 -51 545 321 42 46 chr15 38202512 38202749 -47493005 - MIR SINE MIR -13 249 14 1356 229 20 7 chr15 38203957 38204250 -47491504 + AluJo SINE Alu 1 297 -15 1926 165 15 69 chr15 38204595 38205002 -47490752 + MLT1B LTR MaLR 6 390 0 218 184 0 0 chr15 38205137 38205175 -47490579 + (CATA)n Simple_repeat Simple_repeat 2 39 0 38 17 0 33 chr15 38205204 38205247 -47490507 + AT_rich Low_complexity Low_complexity 1 43 -15 2137 116 0 0 chr15 38205247 38205532 -47490222 - AluSx SINE Alu -27 285 1 38 17 0 33 chr15 38205532 38205548 -47490206 + AT_rich Low_complexity Low_complexity 43 58 0 189 107 0 0 chr15 38205574 38205602 -47490152 + (TAA)n Simple_repeat Simple_repeat 1 28 0 615 305 13 0 chr15 38205678 38205832 -47489922 - MIR SINE MIR -97 165 10 273 357 103 6 chr15 38206090 38206306 -47489448 + MIR SINE MIR 16 249 -13 4207 83 0 2 chr15 38206682 38207236 -47488518 + MER41A LTR ERV1 1 553 -1 368 331 81 107 chr15 38208005 38208464 -47487290 - L2 LINE L2 -1 3271 2825 292 226 140 11 chr15 38208481 38208574 -47487180 + MLT1G1 LTR MaLR 1 105 -490 * 558 242 19 25 chr15 38208570 38208731 -47487023 + MLT1G LTR MaLR 424 583 -7 22 35 0 0 chr15 38208767 38208796 -47486958 + AT_rich Low_complexity Low_complexity 1 29 0 198 274 55 14 chr15 38209342 38209415 -47486339 - MER5A DNA MER1_type -45 144 69 192 342 90 18 chr15 38209483 38209594 -47486160 - L2 LINE L2 -591 2723 2605 425 243 83 35 chr15 38212235 38212404 -47483350 + MER5B DNA MER1_type 2 178 0 280 159 0 0 chr15 38213051 38213095 -47482659 + L2 LINE L2 3262 3305 -8 496 123 0 12 chr15 38213574 38213655 -47482099 + MADE1 DNA Mariner 1 80 0 213 65 0 0 chr15 38218327 38218358 -47477396 + (T)n Simple_repeat Simple_repeat 1 31 0 591 232 197 0 chr15 38219152 38219294 -47476460 + MER58A DNA MER1_type 1 170 -54 207 0 0 0 chr15 38219467 38219490 -47476264 + (A)n Simple_repeat Simple_repeat 1 23 0 233 279 76 13 chr15 38219516 38219595 -47476159 + MIR SINE MIR 108 191 -71 1998 130 11 3 chr15 38219733 38220018 -47475736 + AluSq SINE Alu 1 287 -26 21 36 0 0 chr15 38220068 38220096 -47475658 + AT_rich Low_complexity Low_complexity 1 28 0 34 42 0 0 chr15 38221370 38221418 -47474336 + AT_rich Low_complexity Low_complexity 1 48 0 49 18 0 0 chr15 38221975 38222031 -47473723 + AT_rich Low_complexity Low_complexity 1 56 0 184 371 72 0 chr15 38222094 38222191 -47473563 - L2 LINE L2 0 3272 3169 1142 271 41 74 chr15 38222608 38223192 -47472562 - L1ME3A LINE L1 -241 5929 5365 198 346 25 25 chr15 38224207 38224288 -47471466 + L2 LINE L2 3188 3268 -4 399 319 43 32 chr15 38224312 38224497 -47471257 - MIR SINE MIR -22 240 54 255 211 70 14 chr15 38226891 38226962 -47468792 + MIR3 SINE MIR 1 75 -133 210 286 10 51 chr15 38226939 38227037 -47468717 + L3 LINE CR1 616 709 -868 * 672 108 0 0 chr15 38227130 38227232 -47468522 + AluSg/x SINE Alu 207 308 -4 205 189 0 0 chr15 38228258 38228295 -47467459 + T-rich Low_complexity Low_complexity 5 41 0 22 0 0 0 chr15 38228310 38228332 -47467422 + AT_rich Low_complexity Low_complexity 1 22 0 503 229 86 6 chr15 38229163 38229338 -47466416 - MER53 DNA DNA 0 189 1 423 252 119 7 chr15 38230241 38230392 -47465362 - MIR SINE MIR -21 241 74 1192 183 73 65 chr15 38230484 38230840 -47464914 + L1ME1 LINE L1 5761 6276 -58 385 313 37 11 chr15 38232982 38233167 -47462587 - MIR SINE MIR -36 226 37 5876 78 82 1 chr15 38233854 38234687 -47461067 - L1PA7 LINE L1 -1 6153 5254 383 324 77 6 chr15 38235703 38235885 -47459869 + MER117 DNA MER1_type 2 196 -1 233 316 174 0 chr15 38235888 38235986 -47459768 - MIR3 SINE MIR -46 162 48 364 382 92 24 chr15 38236585 38236923 -47458831 - L2 LINE L2 -15 3257 2897 312 115 0 19 chr15 38236964 38237016 -47458738 + MLT1A1 LTR MaLR 3 53 -312 1252 139 58 43 chr15 38237061 38237319 -47458435 + Tigger7 DNA MER2_type 2225 2486 -1 1900 174 0 0 chr15 38237324 38237629 -47458125 + MLT1A1 LTR MaLR 58 362 -3 182 344 16 62 chr15 38238030 38238158 -47457596 - L2 LINE L2 -454 2860 2739 588 251 78 36 chr15 38238229 38238448 -47457306 + MIR SINE MIR 35 262 0 187 281 70 0 chr15 38239956 38240013 -47455741 + L2 LINE L2 3206 3266 -6 213 225 0 0 chr15 38240016 38240056 -47455698 + GA-rich Low_complexity Low_complexity 3 42 0 23 33 0 0 chr15 38241737 38241767 -47453987 + AT_rich Low_complexity Low_complexity 1 30 0 209 204 41 0 chr15 38241836 38241885 -47453869 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 514 240 156 16 chr15 38241889 38242139 -47453615 - L1M4 LINE L1 -1778 5070 4786 7089 231 53 56 chr15 38242277 38244575 -47451179 + L1M4 LINE L1 2659 4948 -1198 35077 94 18 12 chr15 38244775 38250867 -47444887 - L1PA4 LINE L1 -26 6129 11 6420 185 65 22 chr15 38250885 38251217 -47444537 - L1M4 LINE L1 -2204 4644 4328 2275 184 31 2 chr15 38251217 38251631 -47444123 + MSTB LTR MaLR 1 426 0 6420 185 65 22 chr15 38251631 38253166 -47442588 - L1M4 LINE L1 -2520 4328 2606 1880 137 7 14 chr15 38253166 38253459 -47442295 - AluSp SINE Alu -22 291 1 6420 185 65 22 chr15 38253459 38253545 -47442209 - L1M4 LINE L1 -4242 2606 2525 8837 225 45 41 chr15 38253693 38256257 -47439497 - L1M4 LINE L1 -4261 2588 15 482 300 96 13 chr15 38256273 38256670 -47439084 + L1M4 LINE L1 2149 2578 -3568 3454 102 34 4 chr15 38257124 38257652 -47438102 + L1PA10 LINE L1 5610 6153 -15 24 0 0 0 chr15 38257656 38257680 -47438074 + AT_rich Low_complexity Low_complexity 1 24 0 182 232 161 0 chr15 38257952 38258008 -47437746 - MIR SINE MIR -116 146 82 3915 222 27 24 chr15 38258334 38259412 -47436342 - L1MC4a LINE L1 0 7808 6728 23 54 0 0 chr15 38259567 38259604 -47436150 + AT_rich Low_complexity Low_complexity 1 37 0 5957 176 71 22 chr15 38259605 38261049 -47434705 - Looper DNA T2_type -6 1552 32 2182 97 20 10 chr15 38261049 38261349 -47434405 + AluSx SINE Alu 1 303 -9 5957 176 71 22 chr15 38261349 38261374 -47434380 - Looper DNA T2_type -1526 32 10 196 356 69 11 chr15 38261590 38261677 -47434077 + MIR3 SINE MIR 6 97 -111 1709 93 0 0 chr15 38263702 38263947 -47431807 - AluSg/x SINE Alu 0 313 69 187 234 26 13 chr15 38267096 38267173 -47428581 + GA-rich Low_complexity Low_complexity 3 80 0 226 333 30 10 chr15 38267717 38267816 -47427938 + MIR3 SINE MIR 108 208 0 13277 65 6 1 chr15 38268198 38270123 -47425631 + L1PA15 LINE L1 3547 5477 -677 3590 142 17 57 chr15 38270257 38270954 -47424800 + L1PA15 LINE L1 5478 6146 -19 545 261 10 36 chr15 38270970 38271165 -47424589 - Charlie4 DNA MER1_type -1734 227 38 357 183 54 11 chr15 38272297 38272390 -47423364 + MER94 DNA DNA 2 98 -36 284 327 47 9 chr15 38272551 38272658 -47423096 + MIR SINE MIR 36 146 -62 47 44 0 0 chr15 38272814 38272882 -47422872 + AT_rich Low_complexity Low_complexity 1 68 0 306 315 7 14 chr15 38273237 38273380 -47422374 - L1ME LINE L1 -500 5621 5480 2934 132 78 15 chr15 38273455 38274706 -47421048 + SVA Other Other 307 868 -588 421 202 62 0 chr15 38275300 38275429 -47420325 + L1ME4a LINE L1 5975 6111 -10 320 299 14 76 chr15 38275684 38275828 -47419926 - MIR SINE MIR -82 180 46 231 233 0 50 chr15 38275946 38276006 -47419748 - MIR SINE MIR -11 251 195 334 210 0 0 chr15 38276224 38276286 -47419468 - MER5A DNA MER1_type -80 109 48 368 306 18 6 chr15 38277981 38278121 -47417633 - MIR SINE MIR -63 145 14 3089 187 7 64 chr15 38278239 38278792 -47416962 + MER82 DNA MER2_type 3 511 -142 4612 101 25 18 chr15 38278792 38279525 -47416229 + L1PB2 LINE L1 5414 6151 0 3089 187 7 64 chr15 38279525 38279661 -47416093 + MER82 DNA MER2_type 511 653 0 371 299 157 70 chr15 38280092 38280423 -47415331 - L2 LINE L2 0 3272 2913 780 212 33 0 chr15 38280567 38280751 -47415003 - L1 LINE L1 -1549 4597 4408 1638 196 51 24 chr15 38280767 38280809 -47414945 + L1PB4 LINE L1 5730 5769 -387 204 40 0 0 chr15 38280809 38280834 -47414920 + (TA)n Simple_repeat Simple_repeat 2 26 0 189 74 0 0 chr15 38280833 38280860 -47414894 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 1638 196 51 24 chr15 38280834 38281226 -47414528 + L1PB4 LINE L1 5769 6149 -7 352 349 71 8 chr15 38282359 38282485 -47413269 - MIR3 SINE MIR -14 194 61 189 200 156 0 chr15 38282758 38282803 -47412951 + L3b LINE CR1 1493 1544 -39 23 33 0 0 chr15 38283147 38283177 -47412577 + AT_rich Low_complexity Low_complexity 1 30 0 353 295 127 36 chr15 38284285 38284451 -47411303 + MIR SINE MIR 16 196 -66 22 70 0 0 chr15 38284501 38284544 -47411210 + AT_rich Low_complexity Low_complexity 1 43 0 610 223 130 0 chr15 38284695 38284855 -47410899 + MER5A DNA MER1_type 4 187 -2 236 235 49 12 chr15 38285039 38285120 -47410634 - MER113 DNA MER1_type? -406 115 32 8936 123 11 8 chr15 38285347 38287592 -47408162 - L1PA10 LINE L1 -11 6157 3912 377 284 168 4 chr15 38288479 38288960 -47406794 + L1MC/D LINE L1 5161 5341 -805 207 69 0 0 chr15 38289227 38289256 -47406498 + (GA)n Simple_repeat Simple_repeat 1 29 0 26 0 0 0 chr15 38289271 38289297 -47406457 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr15 38290079 38290122 -47405632 + AT_rich Low_complexity Low_complexity 1 43 0 206 121 0 0 chr15 38290304 38290337 -47405417 + (T)n Simple_repeat Simple_repeat 1 33 0 1137 237 72 9 chr15 38293277 38293598 -47402156 - MER58B DNA MER1_type 0 341 1 1072 169 166 0 chr15 38293752 38294030 -47401724 - MER33 DNA MER1_type 0 324 1 21 36 0 0 chr15 38294094 38294122 -47401632 + AT_rich Low_complexity Low_complexity 1 28 0 2259 106 3 3 chr15 38294659 38294961 -47400793 - AluSq SINE Alu -11 302 1 230 258 71 45 chr15 38295025 38295180 -47400574 - L1MC/D LINE L1 -1961 5916 5758 204 217 0 0 chr15 38295221 38295267 -47400487 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 885 20 0 0 chr15 38295532 38295630 -47400124 - AluYb8 SINE Alu -8 310 213 442 311 80 69 chr15 38295679 38295898 -47399856 - L1MC/D LINE L1 -1095 5120 4894 300 82 262 0 chr15 38295898 38295959 -47399795 - MADE1 DNA Mariner -2 78 2 442 311 80 69 chr15 38295959 38296089 -47399665 - L1MC/D LINE L1 -1321 4894 4767 255 269 19 28 chr15 38296152 38296260 -47399494 - L1MC/D LINE L1 -1528 4687 4581 1843 113 71 4 chr15 38296400 38296666 -47399088 - AluSg SINE Alu -25 285 2 725 179 178 27 chr15 38296822 38297090 -47398664 - L1MB8 LINE L1 -1 6177 5864 * 1476 268 111 52 chr15 38297081 38297654 -47398100 - L1MC/D LINE L1 -4136 2260 1722 2037 89 20 26 chr15 38297654 38297956 -47397798 - AluY SINE Alu -11 300 1 1476 268 111 52 chr15 38297956 38298600 -47397154 - L1MC/D LINE L1 -4674 1722 934 1627 147 68 8 chr15 38298600 38298865 -47396889 + AluSx SINE Alu 1 281 -31 1476 268 111 52 chr15 38298865 38299158 -47396596 - L1MC/D LINE L1 -5462 934 660 335 289 78 14 chr15 38299325 38299467 -47396287 - L1MC/D LINE L1 -6211 185 35 21 36 0 0 chr15 38299630 38299658 -47396096 + AT_rich Low_complexity Low_complexity 1 28 0 995 177 92 8 chr15 38300451 38300711 -47395043 + L1MB7 LINE L1 3657 3938 -2208 2627 160 54 12 chr15 38300711 38301192 -47394562 + L1MB7 LINE L1 5673 6173 -11 485 241 259 0 chr15 38301242 38301412 -47394342 - MIR SINE MIR -2 260 47 319 232 85 0 chr15 38303286 38303368 -47392386 + MIR SINE MIR 100 188 -74 486 209 36 65 chr15 38303369 38303508 -47392246 + MSTD LTR MaLR 5 139 -257 741 254 41 0 chr15 38303552 38303721 -47392033 + MSTD LTR MaLR 219 394 -2 377 310 122 22 chr15 38303847 38304076 -47391678 + MIR SINE MIR 3 254 -8 420 37 0 0 chr15 38304212 38304266 -47391488 + (TG)n Simple_repeat Simple_repeat 2 55 0 2989 91 220 8 chr15 38304381 38304895 -47390859 + L1PA7 LINE L1 3190 3812 -2334 1872 126 8 0 chr15 38306538 38306801 -47388953 - AluSx SINE Alu -47 265 1 10434 105 42 1 chr15 38306994 38309266 -47386488 + L1PA7 LINE L1 3775 6150 -4 3109 204 74 73 chr15 38309549 38309932 -47385822 - L1ME1 LINE L1 -5 6161 5780 1410 165 8 17 chr15 38309932 38310169 -47385585 + MER46A DNA MER2_type 2 236 0 3109 204 74 73 chr15 38310169 38311095 -47384659 - L1ME1 LINE L1 -386 5780 4840 2402 76 26 0 chr15 38311095 38311397 -47384357 - AluY SINE Alu -1 310 1 3109 204 74 73 chr15 38311397 38311499 -47384255 - L1ME1 LINE L1 -1326 4840 4740 22 0 0 0 chr15 38312292 38312314 -47383440 + AT_rich Low_complexity Low_complexity 1 22 0 389 251 109 60 chr15 38313334 38313517 -47382237 + MIR SINE MIR 57 248 -14 1249 200 11 31 chr15 38313527 38313787 -47381967 + AluJo SINE Alu 1 255 -57 1319 181 46 39 chr15 38313835 38314117 -47381637 + AluJo SINE Alu 3 286 -26 355 326 105 48 chr15 38314158 38314471 -47381283 - L2 LINE L2 -121 3151 2821 22 0 0 0 chr15 38314899 38314921 -47380833 + AT_rich Low_complexity Low_complexity 1 22 0 393 217 75 19 chr15 38315549 38315655 -47380099 - MIR SINE MIR -61 147 36 257 224 0 0 chr15 38316329 38316387 -47379367 + L2 LINE L2 3254 3311 -2 413 276 163 15 chr15 38317123 38317326 -47378428 + MIR SINE MIR 24 256 -6 660 270 26 52 chr15 38318189 38318422 -47377332 - MIR SINE MIR -19 243 17 658 295 34 24 chr15 38318668 38319079 -47376675 - LTR16A LTR ERVL 0 450 3 261 350 29 0 chr15 38320431 38320534 -47375220 - L3b LINE CR1 -68 1515 1410 334 272 178 26 chr15 38321048 38321239 -47374515 + MER102b DNA MER1_type 122 341 0 297 262 83 0 chr15 38321258 38321342 -47374412 - MIR SINE MIR -62 146 56 2200 77 30 24 chr15 38321914 38322212 -47373542 + AluY SINE Alu 1 300 -11 337 192 0 27 chr15 38323189 38323262 -47372492 - MER116 DNA Mariner 0 80 10 188 241 96 48 chr15 38324880 38324963 -47370791 - L2 LINE L2 0 3313 3227 862 209 102 25 chr15 38325762 38325997 -47369757 + MIR SINE MIR 4 256 -6 285 268 36 27 chr15 38327396 38327508 -47368246 + MER5A DNA MER1_type 56 168 -21 * 388 248 50 41 chr15 38327416 38327537 -47368217 - MER5A DNA MER1_type -65 124 3 297 300 0 67 chr15 38328180 38328300 -47367454 + MER5A DNA MER1_type 78 189 0 223 269 34 50 chr15 38328302 38328421 -47367333 - MIR3 SINE MIR -77 131 15 190 114 23 23 chr15 38329319 38329363 -47366391 + CT-rich Low_complexity Low_complexity 3 46 0 250 236 39 79 chr15 38333549 38333676 -47362078 - L2 LINE L2 -931 2383 2262 180 152 0 0 chr15 38334702 38334735 -47361019 + CT-rich Low_complexity Low_complexity 2 34 0 247 291 175 0 chr15 38334735 38334838 -47360916 - L2 LINE L2 -1 3271 3151 239 256 11 67 chr15 38335104 38335194 -47360560 + MIR SINE MIR 103 187 -75 570 260 65 8 chr15 38336736 38336924 -47358830 + MIR SINE MIR 57 250 -12 418 137 368 0 chr15 38338479 38338574 -47357180 + L1MB3 LINE L1 5664 5793 -390 224 30 30 0 chr15 38338736 38338769 -47356985 + (CA)n Simple_repeat Simple_repeat 2 35 0 1640 150 56 97 chr15 38338977 38339391 -47356363 + L1MB3 LINE L1 5776 6172 -11 2275 162 67 8 chr15 38339992 38340363 -47355391 - MSTD LTR MaLR 0 396 4 304 229 267 8 chr15 38340367 38340498 -47355256 - MIR3 SINE MIR -33 175 11 268 351 20 3 chr15 38340787 38340906 -47354848 + MIR SINE MIR 28 150 -58 210 319 59 44 chr15 38340924 38341059 -47354695 + MER5A DNA MER1_type 2 138 -51 237 312 73 9 chr15 38342209 38342318 -47353436 + MIR SINE MIR 20 135 -73 278 296 96 8 chr15 38342664 38342789 -47352965 - L2 LINE L2 0 3272 3137 375 246 70 42 chr15 38344060 38344202 -47351552 + MIR SINE MIR 13 158 -104 453 257 66 29 chr15 38344277 38344538 -47351216 + L1P5 LINE L1 5209 5447 -704 5909 151 3 7 chr15 38344695 38345618 -47350136 + L1PA14 LINE L1 1 920 -6661 * 17563 196 12 41 chr15 38345614 38347702 -47348052 + L1PA14 LINE L1 2648 4561 -3023 2195 161 119 8 chr15 38347702 38348087 -47347667 + MSTA LTR MaLR 1 428 0 17563 196 12 41 chr15 38348087 38350041 -47345713 + L1PA14 LINE L1 4561 6571 -1013 314 93 0 0 chr15 38350067 38350110 -47345644 - L1 LINE L1 -1404 4742 4700 4525 109 26 72 chr15 38350116 38350880 -47344874 + L1PA14 LINE L1 6869 7597 -2 676 275 52 10 chr15 38351084 38351277 -47344477 + MIR SINE MIR 14 214 -48 322 198 178 50 chr15 38351380 38351481 -47344273 - MIR SINE MIR -64 144 31 373 287 41 8 chr15 38351745 38351867 -47343887 - MIR SINE MIR -46 216 91 187 234 26 13 chr15 38353874 38353951 -47341803 + GA-rich Low_complexity Low_complexity 3 80 0 197 333 30 10 chr15 38354495 38354594 -47341160 + MIR3 SINE MIR 108 208 0 12906 95 7 3 chr15 38354976 38357566 -47338188 + L1PA7 LINE L1 3547 6151 -3 308 301 59 54 chr15 38358350 38358536 -47337218 - MER5A DNA MER1_type -2 187 1 21 57 0 0 chr15 38358734 38358769 -47336985 + AT_rich Low_complexity Low_complexity 1 35 0 198 351 73 36 chr15 38359605 38359770 -47335984 - L2 LINE L2 -236 3036 2866 383 313 81 0 chr15 38360619 38360779 -47334975 + MIR SINE MIR 87 259 -3 2293 110 0 0 chr15 38361022 38361332 -47334422 + AluY SINE Alu 1 310 -1 620 288 75 0 chr15 38362790 38363002 -47332752 + MIR SINE MIR 10 237 -25 213 163 0 23 chr15 38364144 38364187 -47331567 + A-rich Low_complexity Low_complexity 2 43 0 278 290 150 0 chr15 38364526 38364626 -47331128 - L2 LINE L2 -4 3268 3154 191 296 121 38 chr15 38364747 38365118 -47330636 + L2 LINE L2 2355 2756 -558 330 288 97 59 chr15 38365149 38365609 -47330145 + L2 LINE L2 2733 3280 -33 527 359 65 3 chr15 38366844 38367215 -47328539 - L2 LINE L2 -368 2946 2553 2105 125 0 0 chr15 38367916 38368242 -47327512 - AluSc SINE Alu 0 326 1 249 230 0 46 chr15 38368435 38368522 -47327232 + C-rich Low_complexity Low_complexity 5 87 0 186 328 102 8 chr15 38369605 38369733 -47326021 - MIR3 SINE MIR -48 160 21 327 49 0 0 chr15 38370091 38370132 -47325622 + (GA)n Simple_repeat Simple_repeat 1 41 0 24 77 0 0 chr15 38371208 38371260 -47324494 + AT_rich Low_complexity Low_complexity 1 52 0 24 32 0 0 chr15 38371288 38371319 -47324435 + AT_rich Low_complexity Low_complexity 1 31 0 425 252 84 7 chr15 38372452 38372595 -47323159 + MIR3 SINE MIR 16 169 -39 211 267 40 13 chr15 38372800 38372875 -47322879 + MIR SINE MIR 77 153 -109 1831 124 88 11 chr15 38373365 38373639 -47322115 + AluSq SINE Alu 1 295 -18 520 289 31 6 chr15 38374588 38374747 -47321007 - MLT1I LTR MaLR -2 407 245 226 226 262 0 chr15 38374854 38374938 -47320816 + MIR SINE MIR 10 115 -147 1611 213 97 18 chr15 38374943 38375399 -47320355 - L1ME1 LINE L1 0 6166 5675 222 292 146 0 chr15 38375822 38375918 -47319836 + MIR SINE MIR 83 192 -70 223 309 45 27 chr15 38377721 38377831 -47317923 + MIR SINE MIR 35 146 -62 * 752 241 66 19 chr15 38377825 38378037 -47317717 - MIR SINE MIR -17 245 24 1854 152 0 4 chr15 38378066 38378342 -47317412 - AluJb SINE Alu -37 275 1 21 0 0 0 chr15 38378819 38378840 -47316914 + AT_rich Low_complexity Low_complexity 1 21 0 1144 237 10 30 chr15 38379607 38380035 -47315719 + AluJb SINE Alu 2 423 0 289 257 104 71 chr15 38381091 38381274 -47314480 + MIR3 SINE MIR 14 202 -6 1758 180 7 10 chr15 38382833 38383127 -47312627 - AluJo SINE Alu -17 295 3 16104 80 14 13 chr15 38383285 38386260 -47309494 + L1PA7 LINE L1 3167 6153 -1 269 215 86 11 chr15 38386265 38386358 -47309396 - L1ME4a LINE L1 -3 6118 6019 25 31 0 0 chr15 38386359 38386391 -47309363 + AT_rich Low_complexity Low_complexity 1 32 0 232 256 44 22 chr15 38386402 38386492 -47309262 + MER94 DNA DNA 43 134 0 227 290 30 20 chr15 38386492 38386592 -47309162 - L2 LINE L2 -20 3293 3193 281 282 78 42 chr15 38386838 38386980 -47308774 + MIR3 SINE MIR 61 207 -1 226 212 257 35 chr15 38387990 38388103 -47307651 - Charlie8 DNA MER1_type -2227 190 53 2137 160 42 34 chr15 38388269 38388816 -47306938 + MLT2A2 LTR ERVL 1 554 0 256 219 31 0 chr15 38389214 38389278 -47306476 + G-rich Low_complexity Low_complexity 3 68 0 993 161 39 0 chr15 38389647 38389827 -47305927 - MER53 DNA DNA -1 188 2 241 304 33 11 chr15 38390053 38390145 -47305609 + MIR SINE MIR 71 164 -98 230 233 68 83 chr15 38391137 38391270 -47304484 + MIR SINE MIR 81 211 -51 280 286 89 0 chr15 38391988 38392100 -47303654 + L2 LINE L2 3192 3313 0 217 317 37 0 chr15 38392362 38392444 -47303310 + L3b LINE CR1 1259 1343 -240 556 252 107 0 chr15 38392618 38392777 -47302977 - MER117 DNA MER1_type 0 197 22 476 289 62 40 chr15 38392782 38393007 -47302747 - L2 LINE L2 -7 3306 3077 2213 233 61 8 chr15 38393039 38393546 -47302208 - MLT1F LTR MaLR -8 534 1 639 306 51 0 chr15 38393551 38393781 -47301973 - L2 LINE L2 -303 3010 2770 1780 236 67 50 chr15 38393787 38394376 -47301378 - MLT1G LTR MaLR 0 590 2 1632 288 202 16 chr15 38394379 38395267 -47300487 - L2 LINE L2 -551 2763 1711 393 309 14 69 chr15 38395354 38395571 -47300183 + MIR SINE MIR 53 257 -5 2392 93 0 6 chr15 38396264 38396575 -47299179 - AluSc SINE Alu 0 309 1 2296 98 0 10 chr15 38396623 38396920 -47298834 - AluSg SINE Alu -14 296 3 329 347 25 0 chr15 38396954 38397075 -47298679 + MER94 DNA DNA 1 124 -10 340 337 67 17 chr15 38398196 38398374 -47297380 + MER5A DNA MER1_type 2 188 -1 720 201 119 0 chr15 38398389 38398548 -47297206 + MER5B DNA MER1_type 1 178 0 197 327 0 0 chr15 38398671 38398726 -47297028 + MER5C DNA MER1_type 1 55 -269 198 0 0 0 chr15 38398780 38398802 -47296952 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1018 305 47 19 chr15 38399379 38399740 -47296014 - MLT1K LTR MaLR -214 374 4 287 314 35 0 chr15 38400909 38400995 -47294759 - MER94 DNA DNA -41 93 5 1454 245 122 20 chr15 38402257 38402857 -47292897 + L1ME3A LINE L1 5504 6164 -6 250 292 0 0 chr15 38404010 38404075 -47291679 - MER45 DNA AcHobo 0 1581 1517 453 293 176 14 chr15 38404186 38404408 -47291346 + L1M4 LINE L1 4053 4310 -1836 367 345 30 18 chr15 38404910 38405075 -47290679 + MIR SINE MIR 17 183 -79 314 305 95 20 chr15 38405760 38406065 -47289689 - L1M4 LINE L1 -2222 3924 3597 9432 196 43 22 chr15 38406168 38409256 -47286498 - L1 LINE L1 -1643 4685 1482 2151 141 0 3 chr15 38409256 38409569 -47286185 - AluSq SINE Alu -1 312 1 9432 196 43 22 chr15 38409569 38411073 -47284681 - L1 LINE L1 -4846 1482 11 353 267 48 34 chr15 38411118 38411324 -47284430 - L1M4 LINE L1 -2589 3557 3349 2263 162 42 25 chr15 38411326 38411807 -47283947 - L1MB7 LINE L1 -1 6183 5695 300 27 0 0 chr15 38411862 38411899 -47283855 + (CA)n Simple_repeat Simple_repeat 1 37 0 203 340 0 0 chr15 38412122 38412172 -47283582 - MIR SINE MIR -131 131 82 219 340 15 10 chr15 38412174 38412261 -47283493 - MIR SINE MIR -105 103 16 463 242 36 97 chr15 38413238 38413569 -47282185 + L1ME4a LINE L1 5756 6066 -55 317 303 103 18 chr15 38413625 38413790 -47281964 - MIR3 SINE MIR -6 202 24 5654 253 60 21 chr15 38413833 38415913 -47279841 - L1MDa LINE L1 -1794 4746 2587 610 179 179 31 chr15 38415937 38416133 -47279621 - L1MDa LINE L1 -4358 2182 1958 3136 118 61 2 chr15 38416706 38417213 -47278541 + LTR12 LTR ERV1 1 537 -177 351 308 77 0 chr15 38417213 38417330 -47278424 + MIR SINE MIR 18 143 -65 517 264 68 0 chr15 38418176 38418339 -47277415 + MER5C DNA MER1_type 7 180 -144 559 230 30 18 chr15 38418357 38418522 -47277232 + L1ME2 LINE L1 5998 6164 0 817 158 8 8 chr15 38418546 38418679 -47277075 + AluSq/x SINE Alu 1 133 -180 216 86 0 0 chr15 38418777 38418812 -47276942 + (A)n Simple_repeat Simple_repeat 1 35 0 229 239 56 14 chr15 38418849 38418920 -47276834 + L1MC4 LINE L1 7922 7995 -47 425 230 178 0 chr15 38418975 38419110 -47276644 + MER5C DNA MER1_type 163 321 -3 218 289 30 111 chr15 38419358 38419562 -47276192 + MER5B DNA MER1_type 2 189 0 716 239 33 5 chr15 38419622 38419806 -47275948 - MER5A DNA MER1_type 0 189 1 811 229 5 29 chr15 38419875 38420080 -47275674 - MER3 DNA MER1_type 0 209 10 207 349 39 8 chr15 38420203 38420332 -47275422 - L2 LINE L2 -1 3312 3180 230 319 60 0 chr15 38421810 38421926 -47273828 - MER117 DNA MER1_type -2 195 73 375 305 35 35 chr15 38423908 38424049 -47271705 + MIR SINE MIR 52 192 -70 3870 196 87 16 chr15 38424492 38425461 -47270293 + L1MC4a LINE L1 6597 7634 -174 21 36 0 0 chr15 38425731 38425759 -47269995 + AT_rich Low_complexity Low_complexity 1 28 0 185 136 0 23 chr15 38425848 38425892 -47269862 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 22 0 0 0 chr15 38426692 38426714 -47269040 + AT_rich Low_complexity Low_complexity 1 22 0 192 240 60 0 chr15 38426725 38426775 -47268979 - L2 LINE L2 -6 3266 3214 384 213 93 9 chr15 38428791 38428899 -47266855 + MIR SINE MIR 30 146 -116 430 300 14 0 chr15 38429364 38429504 -47266250 + MIR SINE MIR 4 145 -117 415 173 13 0 chr15 38429571 38429646 -47266108 - MADE1 DNA Mariner -4 76 1 1348 247 38 0 chr15 38429710 38430054 -47265700 - MLT1A1 LTR MaLR -8 357 1 225 0 0 0 chr15 38430880 38430905 -47264849 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr15 38431634 38431655 -47264099 + AT_rich Low_complexity Low_complexity 1 21 0 1753 186 40 8 chr15 38432249 38432603 -47263151 - MLT1A1 LTR MaLR 0 365 1 917 221 18 36 chr15 38433126 38433348 -47262406 - MER20 DNA MER1_type -1 218 1 245 191 0 0 chr15 38433499 38433546 -47262208 + LTR45B LTR ERV1 82 128 -361 818 212 113 64 chr15 38433584 38433929 -47261825 + LTR45B LTR ERV1 128 489 0 521 233 17 0 chr15 38435521 38435641 -47260113 + MER45B DNA AcHobo 2 123 -917 * 2951 167 57 53 chr15 38435638 38436356 -47259398 + MER45B DNA AcHobo 225 945 -95 1538 224 24 22 chr15 38437200 38437571 -47258183 + MLT1A2 LTR MaLR 3 374 0 2334 71 0 0 chr15 38438238 38438521 -47257233 - AluY SINE Alu -10 301 19 274 237 68 0 chr15 38438715 38438774 -47256980 - L2 LINE L2 -41 3231 3169 1842 192 11 8 chr15 38438856 38439221 -47256533 + MER47A DNA MER2_type 1 366 0 204 67 0 0 chr15 38439339 38439369 -47256385 + (CAGG)n Simple_repeat Simple_repeat 2 31 0 10980 156 66 16 chr15 38439524 38441641 -47254113 + Tigger7 DNA MER2_type 265 2487 0 377 313 101 1 chr15 38441693 38441857 -47253897 + MIR SINE MIR 23 202 -60 1080 233 41 72 chr15 38442465 38442739 -47253015 - Charlie4a DNA MER1_type -1453 508 254 5375 116 16 48 chr15 38442739 38443978 -47251776 + L1PA15 LINE L1 4936 6146 -19 1080 233 41 72 chr15 38443978 38444189 -47251565 - Charlie4a DNA MER1_type -1707 254 38 394 204 43 0 chr15 38445321 38445414 -47250340 + MER94 DNA DNA 2 98 -36 284 327 47 9 chr15 38445576 38445683 -47250071 + MIR SINE MIR 36 146 -62 47 44 0 0 chr15 38445839 38445907 -47249847 + AT_rich Low_complexity Low_complexity 1 68 0 306 315 7 14 chr15 38446262 38446405 -47249349 - L1ME LINE L1 -500 5621 5480 1933 156 0 3 chr15 38446461 38446762 -47248992 - AluSx SINE Alu -12 300 1 29 28 0 0 chr15 38446977 38447013 -47248741 + AT_rich Low_complexity Low_complexity 1 36 0 1994 147 0 13 chr15 38447018 38447332 -47248422 + AluSq SINE Alu 4 313 0 248 295 146 16 chr15 38447521 38447843 -47247911 - L1ME LINE L1 -392 5729 5366 507 296 181 31 chr15 38447861 38448348 -47247406 - L1ME LINE L1 -824 5322 4763 442 314 38 93 chr15 38448524 38448594 -47247160 - L1ME LINE L1 -1618 4528 4456 571 27 0 0 chr15 38448594 38448669 -47247085 - L1PA2 LINE L1 0 6155 6081 442 314 38 93 chr15 38448669 38448879 -47246875 - L1ME LINE L1 -1690 4456 4276 534 273 17 11 chr15 38448879 38449055 -47246699 + MER5B DNA MER1_type 1 177 -1 442 314 38 93 chr15 38449055 38449193 -47246561 - L1ME LINE L1 -1870 4276 4132 8957 199 36 29 chr15 38449195 38449801 -47245953 - L1PA16 LINE L1 -8 6158 5558 1678 146 39 93 chr15 38449801 38450157 -47245597 + MER1B DNA MER1_type 1 337 0 8957 199 36 29 chr15 38450157 38453309 -47242445 - L1PA16 LINE L1 -608 5558 2359 1391 119 16 103 chr15 38453993 38454245 -47241509 + MER30 DNA MER1_type 1 230 0 344 248 125 107 chr15 38455074 38455480 -47240274 - L1ME LINE L1 -2291 3855 3441 321 246 108 46 chr15 38456253 38456383 -47239371 + MIR3 SINE MIR 62 199 -9 638 309 172 15 chr15 38456648 38457033 -47238721 + L3 LINE CR1 395 865 -712 183 42 0 0 chr15 38457033 38457057 -47238697 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 638 309 172 15 chr15 38457057 38457131 -47238623 + L3 LINE CR1 865 926 -651 377 317 75 84 chr15 38457170 38457255 -47238499 + L3 LINE CR1 1053 1137 -440 1111 175 23 0 chr15 38457255 38457426 -47238328 + FAM SINE Alu 1 175 0 377 317 75 84 chr15 38457426 38457662 -47238092 + L3 LINE CR1 1137 1371 -206 * 411 295 194 6 chr15 38457653 38457830 -47237924 + MIR SINE MIR 18 228 -34 213 352 9 48 chr15 38458076 38458181 -47237573 + MIR SINE MIR 41 141 -67 241 238 16 0 chr15 38459944 38460007 -47235747 + (TATG)n Simple_repeat Simple_repeat 1 64 0 181 250 0 0 chr15 38460592 38460628 -47235126 - L2 LINE L2 -33 3239 3204 193 312 39 0 chr15 38460958 38461035 -47234719 - MIR SINE MIR -100 108 29 1298 119 5 30 chr15 38462619 38462820 -47232934 + MER2 DNA MER2_type 1 196 -149 826 252 136 42 chr15 38462874 38463418 -47232336 + L1ME4a LINE L1 5510 6104 -17 399 228 280 21 chr15 38463711 38463900 -47231854 + MIR SINE MIR 25 262 0 2847 99 6 0 chr15 38464018 38464380 -47231374 + THE1B LTR MaLR 1 364 0 551 218 9 9 chr15 38465106 38465216 -47230538 + MER81 DNA DNA 4 113 -1 485 315 121 24 chr15 38465267 38465597 -47230157 + MLT1J2 LTR MaLR 67 428 -22 186 320 157 7 chr15 38465877 38466030 -47229724 - L2 LINE L2 -529 2785 2610 1515 170 3 79 chr15 38466045 38466164 -47229590 + AluJo SINE Alu 1 127 -185 1869 114 37 47 chr15 38466164 38466461 -47229293 - AluSx SINE Alu -16 296 3 1515 170 3 79 chr15 38466461 38466659 -47229095 + AluJo SINE Alu 127 294 -18 1683 147 55 0 chr15 38467206 38467479 -47228275 + AluJb SINE Alu 1 288 -24 384 263 67 127 chr15 38467553 38468065 -47227689 - L2 LINE L2 -5 3267 2789 2172 206 50 6 chr15 38468922 38469423 -47226331 + L1MC3 LINE L1 7257 7779 -6 31820 103 22 61 chr15 38470183 38476580 -47219174 + L1PA7 LINE L1 12 6154 0 276 301 115 39 chr15 38476750 38477036 -47218718 - L1ME3A LINE L1 -230 5940 5633 386 258 242 0 chr15 38477953 38478081 -47217673 - MIR SINE MIR -12 250 92 383 255 10 0 chr15 38478824 38478926 -47216828 - MIR SINE MIR -55 207 105 754 228 83 95 chr15 38479518 38479940 -47215814 + MLT1J1 LTR MaLR 1 417 -29 245 353 46 13 chr15 38481094 38481247 -47214507 - MIR SINE MIR -29 233 76 343 75 151 0 chr15 38482070 38482123 -47213631 - U7 snRNA snRNA -1 62 2 2019 211 68 78 chr15 38482123 38482838 -47212916 + L1ME1 LINE L1 5459 6166 0 1335 186 24 4 chr15 38483755 38484003 -47211751 - L1PA16 LINE L1 -2 6164 5912 182 241 218 11 chr15 38485065 38485152 -47210602 - MIR SINE MIR -48 214 110 601 271 61 28 chr15 38486135 38486349 -47209405 - MIR SINE MIR -34 228 8 866 184 48 88 chr15 38486771 38487021 -47208733 - L2 LINE L2 -2 3311 3072 858 283 122 29 chr15 38487085 38487724 -47208030 + L1ME LINE L1 5101 5804 -358 32 0 0 0 chr15 38487807 38487839 -47207915 + AT_rich Low_complexity Low_complexity 1 32 0 225 264 55 27 chr15 38488049 38488159 -47207595 + L1MC4 LINE L1 7929 8041 -1 256 293 60 72 chr15 38488172 38488339 -47207415 + MIR SINE MIR 20 184 -78 370 283 58 22 chr15 38491189 38491327 -47204427 - MIR SINE MIR 0 262 120 1699 175 16 3 chr15 38492065 38492188 -47203566 + AluJo SINE Alu 1 121 -191 183 80 0 0 chr15 38492188 38492213 -47203541 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1699 175 16 3 chr15 38492213 38492392 -47203362 + AluJo SINE Alu 121 307 -5 612 181 163 56 chr15 38492670 38492830 -47202924 + MER5B DNA MER1_type 1 177 -1 192 40 0 0 chr15 38493075 38493100 -47202654 + (A)n Simple_repeat Simple_repeat 1 25 0 217 294 156 0 chr15 38493509 38493618 -47202136 + L2 LINE L2 3147 3272 0 328 290 163 32 chr15 38494834 38495086 -47200668 - L3 LINE CR1 -189 1388 1104 257 182 0 30 chr15 38495481 38495547 -47200207 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 400 238 95 32 chr15 38497164 38497240 -47198514 + L1ME3A LINE L1 6020 6109 -61 2155 194 142 5 chr15 38497240 38497683 -47198071 + MLT1D LTR MaLR 1 504 -1 400 238 95 32 chr15 38497683 38497732 -47198022 + L1ME3A LINE L1 6109 6153 -17 381 243 29 10 chr15 38498165 38498268 -47197486 - MER97b DNA MER1_type? -930 123 19 195 139 0 0 chr15 38498341 38498377 -47197377 + (A)n Simple_repeat Simple_repeat 1 36 0 439 198 167 24 chr15 38498429 38498555 -47197199 - L1ME3 LINE L1 -1 6161 6018 589 297 63 13 chr15 38499166 38499405 -47196349 - MIR SINE MIR 0 262 12 303 270 11 17 chr15 38500147 38500250 -47195504 + CT-rich Low_complexity Low_complexity 3 177 0 214 247 86 37 chr15 38501325 38501406 -47194348 - L2 LINE L2 -50 3263 3179 236 150 0 0 chr15 38503248 38503288 -47192466 + L2 LINE L2 3272 3311 -2 247 310 0 0 chr15 38503603 38503674 -47192080 - MER94 DNA DNA -63 71 1 256 125 0 54 chr15 38504233 38504289 -47191465 + Alu SINE Alu 1 53 -246 330 227 128 79 chr15 38504823 38505026 -47190728 + L1ME4a LINE L1 5879 6091 -30 2516 74 0 3 chr15 38505080 38505391 -47190363 - AluSg SINE Alu 0 310 1 1375 201 68 7 chr15 38505641 38505935 -47189819 + AluJo SINE Alu 1 312 0 253 281 0 0 chr15 38506267 38506331 -47189423 - MIR3 SINE MIR 0 208 145 385 246 152 22 chr15 38506399 38506537 -47189217 + MIR3 SINE MIR 41 196 -12 267 103 0 0 chr15 38506745 38506784 -47188970 + (TTCTCC)n Simple_repeat Simple_repeat 5 43 0 912 169 6 30 chr15 38506895 38507061 -47188693 - MER4B LTR ERV1 -448 162 1 1283 267 151 33 chr15 38508574 38509004 -47186750 + MLT1G1 LTR MaLR 25 505 -90 206 391 0 0 chr15 38509042 38509111 -47186643 + L2 LINE L2 1531 1599 -1715 563 330 217 8 chr15 38509111 38509566 -47186188 - L2 LINE L2 0 3313 2747 433 216 105 13 chr15 38509568 38509712 -47186042 + MLT1F1 LTR MaLR 2 167 -400 2758 207 84 54 chr15 38509712 38509822 -47185932 + L1ME1 LINE L1 5330 5435 -743 834 194 0 0 chr15 38509822 38509951 -47185803 + FLAM_A SINE Alu 1 129 -4 2758 207 84 54 chr15 38509951 38510693 -47185061 + L1ME1 LINE L1 5435 6176 -2 319 281 117 23 chr15 38510765 38510936 -47184818 + L2 LINE L2 1860 2046 -1268 251 288 25 0 chr15 38511000 38511080 -47184674 + L2 LINE L2 2308 2389 -925 1682 164 7 30 chr15 38511097 38511401 -47184353 - AluJb SINE Alu -15 297 1 25 31 0 0 chr15 38511895 38511927 -47183827 + AT_rich Low_complexity Low_complexity 1 32 0 463 279 112 29 chr15 38511934 38512282 -47183472 + L1MC/D LINE L1 4792 5168 -978 323 211 138 53 chr15 38512354 38512506 -47183248 + L1MC/D LINE L1 5267 5431 -690 225 312 42 53 chr15 38512565 38512754 -47183000 + L1MC/D LINE L1 5550 5736 -434 247 204 0 0 chr15 38512804 38512853 -47182901 + L1MC/D LINE L1 5851 5899 -1909 2557 199 93 43 chr15 38512915 38513543 -47182211 - L1ME1 LINE L1 -5 6161 5497 2193 117 0 13 chr15 38513543 38513859 -47181895 - AluSx SINE Alu 0 312 1 2557 199 93 43 chr15 38513859 38513897 -47181857 - L1ME1 LINE L1 -669 5497 5462 1614 178 42 3 chr15 38514164 38514331 -47181423 - AluJo SINE Alu -14 298 114 306 0 0 0 chr15 38514331 38514365 -47181389 + (TG)n Simple_repeat Simple_repeat 1 34 0 1614 178 42 3 chr15 38514365 38514484 -47181270 - AluJo SINE Alu -198 114 1 420 231 51 26 chr15 38517052 38517169 -47178585 + MIR3 SINE MIR 87 206 -2 24 0 0 0 chr15 38518152 38518176 -47177578 + AT_rich Low_complexity Low_complexity 1 24 0 571 207 36 9 chr15 38519164 38519275 -47176479 + MER90 LTR ERV1 1 114 -500 1534 251 30 5 chr15 38519278 38519645 -47176109 + L1MC4a LINE L1 4571 4946 -1200 301 160 0 0 chr15 38519672 38519722 -47176032 - MLT1F1 LTR MaLR 0 567 518 264 291 12 0 chr15 38520157 38520243 -47175511 - MIR SINE MIR -79 129 43 266 349 47 9 chr15 38520269 38520375 -47175379 + MIR SINE MIR 81 190 -72 561 284 69 16 chr15 38521335 38521652 -47174102 + L1MC4a LINE L1 5494 5800 -321 1948 155 5 55 chr15 38522541 38522684 -47173070 + MLT1A1 LTR MaLR 17 165 -200 2244 106 3 0 chr15 38522684 38522977 -47172777 + AluSp SINE Alu 1 294 -19 1948 155 5 55 chr15 38522977 38523200 -47172554 + MLT1A1 LTR MaLR 165 365 0 570 232 99 51 chr15 38523370 38523767 -47171987 + LTR33 LTR ERVL 1 464 -57 343 307 92 71 chr15 38523883 38524366 -47171388 - L2 LINE L2 -252 3020 2513 1119 253 135 25 chr15 38524366 38524730 -47171024 + MLT1J2 LTR MaLR 14 417 -33 2106 122 0 3 chr15 38524982 38525276 -47170478 - AluSx SINE Alu -19 293 1 288 0 0 0 chr15 38526260 38526292 -47169462 + (TG)n Simple_repeat Simple_repeat 1 32 0 326 332 89 25 chr15 38526644 38526846 -47168908 - MIR SINE MIR -35 227 13 591 186 39 39 chr15 38527254 38527383 -47168371 - L2 LINE L2 -5 3308 3180 279 0 0 0 chr15 38527400 38527431 -47168323 + (CA)n Simple_repeat Simple_repeat 2 32 0 205 233 0 0 chr15 38527542 38527585 -47168169 - L2 LINE L2 0 3313 3271 2332 93 3 0 chr15 38527586 38527876 -47167878 - AluSp SINE Alu -21 292 2 2001 128 7 23 chr15 38528385 38528691 -47167063 - AluSx SINE Alu -11 301 1 863 163 0 15 chr15 38528714 38528849 -47166905 - FLAM_C SINE Alu 0 133 1 517 253 11 56 chr15 38528849 38529039 -47166715 - MIR SINE MIR -47 215 38 329 279 162 9 chr15 38529309 38529420 -47166334 + MIR3 SINE MIR 32 159 -49 242 173 0 58 chr15 38529706 38529758 -47165996 + L2 LINE L2 3264 3312 -1 603 74 0 0 chr15 38530292 38530373 -47165381 + (TA)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr15 38530539 38530560 -47165194 + AT_rich Low_complexity Low_complexity 1 21 0 321 322 87 0 chr15 38530582 38530731 -47165023 - MIR3 SINE MIR -14 194 33 313 308 176 6 chr15 38531270 38531429 -47164325 + L2 LINE L2 3086 3271 -1 423 249 52 27 chr15 38531989 38532243 -47163511 - L1ME4a LINE L1 -153 5968 5708 199 333 157 0 chr15 38532720 38532828 -47162926 + L2 LINE L2 3189 3313 0 528 93 0 0 chr15 38533252 38533327 -47162427 + (CA)n Simple_repeat Simple_repeat 1 75 0 185 295 39 128 chr15 38533688 38533946 -47161808 - L2 LINE L2 -4 3268 3034 3610 251 94 32 chr15 38534252 38537335 -47158419 + L1MC5 LINE L1 25 3280 -2800 665 253 65 8 chr15 38537337 38537582 -47158172 + L1MC5 LINE L1 4855 5113 -967 802 141 16 8 chr15 38537585 38537713 -47158041 + AluSq/x SINE Alu 3 131 -182 319 274 38 28 chr15 38537814 38537920 -47157834 - MIR SINE MIR -59 149 43 498 308 48 35 chr15 38537940 38538167 -47157587 - MIR SINE MIR -3 259 30 700 315 30 0 chr15 38538178 38538381 -47157373 + MER63A DNA MER1_type 2 210 0 843 252 23 41 chr15 38539051 38539269 -47156485 - MIR SINE MIR -22 240 27 208 147 0 0 chr15 38539949 38539983 -47155771 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 1309 247 82 16 chr15 38540303 38540680 -47155074 + LTR16C LTR ERVL 87 488 -3 427 270 150 49 chr15 38541225 38541451 -47154303 + MIR SINE MIR 8 256 -6 330 263 289 5 chr15 38541404 38541594 -47154160 - MIR SINE MIR -15 247 4 * 188 286 57 0 chr15 38541594 38541652 -47154102 + L2 LINE L2 3196 3257 -15 459 251 86 38 chr15 38541982 38542218 -47153536 + MIR SINE MIR 12 261 -1 201 74 0 0 chr15 38542672 38542699 -47153055 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 1959 156 0 0 chr15 38543416 38543711 -47152043 + AluJo SINE Alu 1 295 -17 1168 255 156 82 chr15 38543727 38545917 -47149837 + L1MC5 LINE L1 5478 7845 -50 233 325 16 15 chr15 38546464 38546638 -47149116 + GA-rich Low_complexity Low_complexity 1 174 0 825 176 0 8 chr15 38547206 38547337 -47148417 + FLAM_C SINE Alu 2 131 -2 192 133 0 0 chr15 38548207 38548237 -47147517 - MIR SINE MIR -142 120 91 865 256 34 13 chr15 38548736 38548970 -47146784 + L1ME LINE L1 5492 5730 -391 215 375 102 0 chr15 38550247 38550335 -47145419 + L2 LINE L2 3115 3211 -61 214 257 0 43 chr15 38551099 38551169 -47144585 - MER5B DNA MER1_type -6 172 106 940 103 0 109 chr15 38552443 38552617 -47143137 + MER93b LTR ERV1 3 157 -216 2009 109 3 46 chr15 38552774 38553076 -47142678 + AluSq SINE Alu 3 291 -22 2247 96 0 45 chr15 38553237 38553551 -47142203 + AluSq SINE Alu 1 300 -13 417 206 0 0 chr15 38553551 38553643 -47142111 + (TA)n Simple_repeat Simple_repeat 1 92 0 1027 240 42 9 chr15 38553695 38553912 -47141842 - MER58A DNA MER1_type 0 224 1 249 274 153 40 chr15 38553914 38554487 -47141267 - L1P LINE L1 -1912 4234 3588 454 293 16 0 chr15 38555293 38555416 -47140338 - MER94 DNA DNA -4 130 6 5617 171 20 15 chr15 38555656 38556782 -47138972 - L1 LINE L1 -1700 4446 3315 * 5761 161 29 33 chr15 38556780 38558702 -47137052 + L1MA9 LINE L1 4397 6312 0 458 263 23 23 chr15 38558810 38558981 -47136773 + L1ME4a LINE L1 5673 5843 -278 194 160 0 100 chr15 38560071 38560121 -47135633 + L2 LINE L2 3182 3226 -87 435 194 129 0 chr15 38561820 38561913 -47133841 + MLT1L LTR MaLR 148 252 -363 737 284 31 14 chr15 38561984 38562206 -47133548 + MLT1L LTR MaLR 386 611 -4 389 188 47 0 chr15 38563035 38563120 -47132634 - MIR SINE MIR -49 213 125 457 281 15 65 chr15 38563762 38563961 -47131793 + MLT1L LTR MaLR 423 611 -4 389 188 47 0 chr15 38564790 38564875 -47130879 - MIR SINE MIR -49 213 125 195 290 32 16 chr15 38565250 38565312 -47130442 + MIR SINE MIR 84 146 -116 337 297 50 0 chr15 38565546 38565647 -47130107 + L2 LINE L2 3136 3241 -31 190 207 65 0 chr15 38566213 38566277 -47129477 - MIR SINE MIR -82 180 112 288 286 46 32 chr15 38566824 38567011 -47128743 - MIR SINE MIR -63 145 1 398 309 40 11 chr15 38567118 38567293 -47128461 - MIR3 SINE MIR -17 191 12 812 173 0 7 chr15 38568283 38568422 -47127332 + L1PB3 LINE L1 6011 6148 -6 1155 256 75 37 chr15 38568448 38568796 -47126958 + MER115 DNA AcHobo 1 361 -332 613 201 0 83 chr15 38568899 38568955 -47126799 + Zaphod DNA AcHobo 3877 3936 -95 2072 115 7 0 chr15 38568955 38569241 -47126513 - AluSx SINE Alu -10 302 15 613 201 0 83 chr15 38569241 38569353 -47126401 + Zaphod DNA AcHobo 3936 4031 0 252 330 62 0 chr15 38569400 38569497 -47126257 - L2 LINE L2 0 3272 3170 210 401 11 16 chr15 38569840 38570027 -47125727 - L2 LINE L2 -166 3106 2921 366 258 11 0 chr15 38570762 38570855 -47124899 + L2 LINE L2 3168 3261 -11 259 286 33 0 chr15 38571481 38571572 -47124182 + GA-rich Low_complexity Low_complexity 2 95 0 232 343 80 11 chr15 38571977 38572152 -47123602 + L2 LINE L2 2856 3042 -271 223 295 11 53 chr15 38572718 38572813 -47122941 + MIR SINE MIR 64 154 -108 4931 158 60 10 chr15 38573043 38574228 -47121526 - L1MB3 LINE L1 -3 6180 4935 232 362 17 9 chr15 38574245 38574361 -47121393 - MIR3 SINE MIR -77 131 15 779 205 130 10 chr15 38574865 38574910 -47120844 + MER58A DNA MER1_type 1 39 -2381 2148 114 0 3 chr15 38574910 38575199 -47120555 - AluSx SINE Alu -24 288 1 779 205 130 10 chr15 38575199 38575353 -47120401 + MER58A DNA MER1_type 39 224 0 180 280 169 34 chr15 38575882 38576000 -47119754 + MIR SINE MIR 59 192 -70 225 0 0 0 chr15 38577899 38577924 -47117830 + (TG)n Simple_repeat Simple_repeat 2 26 0 206 229 102 102 chr15 38579228 38579385 -47116369 + MIR SINE MIR 106 262 0 24 32 0 0 chr15 38579654 38579685 -47116069 + AT_rich Low_complexity Low_complexity 1 31 0 2154 116 7 0 chr15 38580485 38580796 -47114958 - AluSq SINE Alu 0 313 1 22 0 0 0 chr15 38580803 38580825 -47114929 + AT_rich Low_complexity Low_complexity 1 22 0 277 320 19 10 chr15 38580903 38581006 -47114748 - MER91A DNA MER1_type -81 115 12 279 0 0 0 chr15 38581094 38581125 -47114629 + (A)n Simple_repeat Simple_repeat 1 31 0 867 133 52 23 chr15 38581252 38581425 -47114329 - MLT1B LTR MaLR -45 345 168 808 154 41 18 chr15 38581442 38581611 -47114143 - L1MA6 LINE L1 0 6300 6128 265 285 76 14 chr15 38581626 38581770 -47113984 - L1M3b LINE L1 -6125 156 4 273 57 0 0 chr15 38582932 38582967 -47112787 + (A)n Simple_repeat Simple_repeat 1 35 0 223 379 31 35 chr15 38585366 38585622 -47110132 - L2 LINE L2 -210 3062 2808 1078 88 14 0 chr15 38585624 38585771 -47109983 + L1PA10 LINE L1 6014 6162 -6 189 420 22 13 chr15 38585843 38586157 -47109597 - L2 LINE L2 -641 2673 2357 * 232 355 103 26 chr15 38586146 38586301 -47109453 + MIR3 SINE MIR 30 196 -12 294 310 44 13 chr15 38586610 38586794 -47108960 + L1ME3A LINE L1 4885 5081 -1065 747 163 65 33 chr15 38586795 38586979 -47108775 - L1MD3 LINE L1 -7 7988 7799 1417 173 0 54 chr15 38587093 38587370 -47108384 + AluJo SINE Alu 50 311 -1 538 251 53 89 chr15 38587379 38588170 -47107584 + L1ME3A LINE L1 5223 5966 -204 704 217 6 12 chr15 38588753 38588914 -47106840 - MER5B DNA MER1_type 0 178 19 21 0 0 0 chr15 38588914 38588935 -47106819 + AT_rich Low_complexity Low_complexity 1 21 0 880 214 29 6 chr15 38589173 38589346 -47106408 - MER20 DNA MER1_type -1 218 42 333 205 172 73 chr15 38590749 38590900 -47104854 - L1MC4 LINE L1 -326 7716 7551 232 294 0 0 chr15 38591145 38591238 -47104516 - MIR SINE MIR -64 144 51 1374 203 14 3 chr15 38592269 38592555 -47103199 + L1MB7 LINE L1 5877 6165 -19 2125 121 3 34 chr15 38592848 38593171 -47102583 + LTR32 LTR ERVL 15 327 -144 927 174 33 16 chr15 38593169 38593353 -47102401 + LTR32 LTR ERVL 285 471 0 * 284 216 80 45 chr15 38595715 38595803 -47099951 + L2 LINE L2 3200 3290 -23 1328 161 77 7 chr15 38596248 38596522 -47099232 + MER33 DNA MER1_type 1 293 -31 2582 131 68 2 chr15 38596522 38596964 -47098790 + L1MB3 LINE L1 5712 6182 -1 24 0 0 0 chr15 38598054 38598078 -47097676 + AT_rich Low_complexity Low_complexity 1 24 0 2012 154 3 3 chr15 38598078 38598390 -47097364 - AluSx SINE Alu 0 312 1 968 253 30 4 chr15 38599702 38599967 -47095787 - L1MD3 LINE L1 -10 7985 7714 575 225 0 17 chr15 38600462 38600582 -47095172 + MLT1D LTR MaLR 8 125 -380 1661 192 86 9 chr15 38600594 38600933 -47094821 + MLT1B LTR MaLR 26 390 0 1603 207 72 22 chr15 38600933 38601295 -47094459 + MLT1D LTR MaLR 126 505 0 519 217 204 0 chr15 38601618 38601775 -47093979 + MIR SINE MIR 2 190 -72 727 214 0 14 chr15 38601810 38601950 -47093804 - FRAM SINE Alu -38 138 1 501 272 113 72 chr15 38602149 38602658 -47093096 + Charlie8 DNA MER1_type 11 532 -1885 545 234 145 34 chr15 38603948 38604183 -47091571 - MIR SINE MIR 0 262 2 209 197 33 16 chr15 38604474 38604535 -47091219 + MER5B DNA MER1_type 4 65 -113 742 178 72 0 chr15 38604536 38604688 -47091066 + L1MB4 LINE L1 6010 6172 -8 319 202 109 50 chr15 38604694 38604813 -47090941 + MER5B DNA MER1_type 48 173 -5 243 254 0 0 chr15 38604826 38604885 -47090869 - MER5A DNA MER1_type 0 189 131 258 308 115 15 chr15 38604987 38605117 -47090637 + MER103 DNA DNA 3 145 -21 286 260 19 29 chr15 38605423 38605527 -47090227 + MIR3 SINE MIR 88 190 -18 659 223 128 1 chr15 38606595 38606868 -47088886 - MLT1A1 LTR MaLR 0 365 25 259 313 44 50 chr15 38607460 38607642 -47088112 - MIR SINE MIR -55 207 27 184 106 0 43 chr15 38607990 38608037 -47087717 + (TAAAAA)n Simple_repeat Simple_repeat 2 46 0 593 219 25 6 chr15 38608396 38608556 -47087198 - MER96B DNA MER1_type? 0 417 255 901 152 0 0 chr15 38608882 38609027 -47086727 - AluSg/x SINE Alu 0 310 166 319 339 36 16 chr15 38609804 38609996 -47085758 - MIR SINE MIR -46 216 21 225 0 0 0 chr15 38610657 38610682 -47085072 + (TAAAAA)n Simple_repeat Simple_repeat 1 25 0 1772 169 19 10 chr15 38612131 38612438 -47083316 + AluJb SINE Alu 1 310 -2 419 203 0 0 chr15 38614124 38614193 -47081561 + MER58A DNA MER1_type 3 71 -36 799 248 113 0 chr15 38614399 38614629 -47081125 - MIR SINE MIR 0 262 7 264 285 123 0 chr15 38615202 38615462 -47080292 - L2 LINE L2 -980 2334 2043 505 305 63 5 chr15 38616599 38616789 -47078965 + MIR SINE MIR 50 250 -12 257 286 24 0 chr15 38617148 38617232 -47078522 + L2 LINE L2 3166 3251 -62 445 282 172 0 chr15 38617519 38617695 -47078059 - MIR SINE MIR 0 262 57 21 0 0 0 chr15 38619855 38619876 -47075878 + AT_rich Low_complexity Low_complexity 1 21 0 626 235 27 0 chr15 38620595 38620744 -47075010 - MER96B DNA MER1_type? 0 175 23 685 140 78 45 chr15 38621294 38621444 -47074310 - MER53 DNA DNA 0 189 31 1916 56 16 12 chr15 38621444 38621694 -47074060 - L1PA8 LINE L1 -4 6168 5918 685 140 78 45 chr15 38621694 38621722 -47074032 - MER53 DNA DNA -158 31 5 712 262 12 6 chr15 38621898 38622070 -47073684 - MER5B DNA MER1_type -5 173 1 267 270 226 9 chr15 38622108 38622223 -47073531 + MIR SINE MIR 38 177 -85 2426 69 0 0 chr15 38622349 38622680 -47073074 + AluY SINE Alu 1 311 0 250 283 184 53 chr15 38622711 38623178 -47072576 + HAL1 LINE L1 202 729 -1778 244 212 141 98 chr15 38623204 38623388 -47072366 + HAL1 LINE L1 784 975 -1532 * 2462 249 95 67 chr15 38623386 38624661 -47071093 + HAL1 LINE L1 1187 2497 -10 465 209 19 89 chr15 38627015 38627173 -47068581 + MER103 DNA DNA 12 158 -8 231 375 21 0 chr15 38627236 38627332 -47068422 - MIR3 SINE MIR -53 155 58 1783 161 0 29 chr15 38628500 38628811 -47066943 + AluJo SINE Alu 1 302 -10 226 345 26 35 chr15 38629034 38629147 -47066607 + MIR SINE MIR 33 144 -64 272 231 103 13 chr15 38629480 38629558 -47066196 + MIR SINE MIR 18 102 -106 379 223 19 19 chr15 38629668 38629771 -47065983 - MIR SINE MIR -53 209 107 1518 225 19 45 chr15 38629783 38629983 -47065771 + LTR16A LTR ERVL 19 223 -227 1556 216 40 59 chr15 38629983 38630044 -47065710 - MLT1C LTR MaLR 0 467 406 2305 75 0 26 chr15 38630044 38630337 -47065417 + AluY SINE Alu 1 287 -24 462 18 0 0 chr15 38630337 38630392 -47065362 + (CATA)n Simple_repeat Simple_repeat 2 56 0 2305 75 0 26 chr15 38630392 38630404 -47065350 + AluY SINE Alu 287 298 -13 1556 216 40 59 chr15 38630404 38630818 -47064936 - MLT1C LTR MaLR -61 406 1 1518 225 19 45 chr15 38630818 38631035 -47064719 + LTR16A LTR ERVL 223 425 -25 2351 105 0 3 chr15 38631536 38631841 -47063913 - AluSx SINE Alu -8 304 1 207 311 56 33 chr15 38632366 38632456 -47063298 - MIR SINE MIR -78 184 93 227 238 75 25 chr15 38632906 38632986 -47062768 + MIR SINE MIR 83 166 -96 216 0 0 0 chr15 38633164 38633188 -47062566 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 345 206 118 52 chr15 38633193 38633329 -47062425 - L2 LINE L2 -14 3299 3155 207 326 11 11 chr15 38633374 38633466 -47062288 - L2 LINE L2 -267 3046 2955 1202 104 16 16 chr15 38633470 38633652 -47062102 + Tigger1 DNA MER2_type 1461 1642 -776 1923 280 129 29 chr15 38633660 38634454 -47061300 - L2 LINE L2 -371 2943 2230 15280 112 14 53 chr15 38634454 38634979 -47060775 - Tigger1 DNA MER2_type 0 2418 1874 1588 182 0 27 chr15 38634979 38635275 -47060479 + AluJb SINE Alu 2 289 -23 15280 112 14 53 chr15 38635275 38636210 -47059544 - Tigger1 DNA MER2_type -544 1874 903 2519 72 0 0 chr15 38636210 38636517 -47059237 - AluY SINE Alu -4 307 1 15280 112 14 53 chr15 38636517 38637068 -47058686 - Tigger1 DNA MER2_type -1515 903 523 2221 81 0 50 chr15 38637068 38637389 -47058365 - AluSx SINE Alu -7 305 1 15280 112 14 53 chr15 38637389 38637893 -47057861 - Tigger1 DNA MER2_type -1895 523 1 1923 280 129 29 chr15 38637893 38638152 -47057602 - L2 LINE L2 -1084 2230 1784 207 327 106 0 chr15 38638817 38638921 -47056833 + MIR3 SINE MIR 76 190 -18 4009 9 0 0 chr15 38640685 38641129 -47054625 + L1HS LINE L1 5712 6155 0 654 255 116 90 chr15 38641607 38642141 -47053613 + L1ME3A LINE L1 4606 5164 -982 822 163 31 0 chr15 38642141 38642270 -47053484 + FLAM_C SINE Alu 1 133 0 654 255 116 90 chr15 38642270 38642434 -47053320 + L1ME3A LINE L1 5164 5322 -824 857 128 14 54 chr15 38642470 38642618 -47053136 + FRAM SINE Alu 20 161 -15 813 223 200 53 chr15 38642618 38642725 -47053029 + L1ME3A LINE L1 5332 5422 -748 2147 109 14 0 chr15 38642725 38643019 -47052735 + AluY SINE Alu 1 298 -13 813 223 200 53 chr15 38643019 38643462 -47052292 + L1ME3A LINE L1 5422 5963 -207 408 262 164 39 chr15 38644503 38644888 -47050866 + L1ME4a LINE L1 5600 6032 -89 576 116 0 0 chr15 38645545 38645640 -47050114 + Alu SINE Alu 215 309 -1 2233 89 9 29 chr15 38646815 38647131 -47048623 + AluY SINE Alu 1 310 -1 1374 152 30 17 chr15 38647732 38647962 -47047792 - AluJo SINE Alu -8 304 72 298 317 50 31 chr15 38649863 38650024 -47045730 - L2 LINE L2 -955 2359 2196 651 190 0 16 chr15 38651403 38651524 -47044230 - FLAM_A SINE Alu -13 120 2 945 147 83 0 chr15 38652590 38652747 -47043007 + Charlie1 DNA MER1_type 58 227 -2534 492 136 80 32 chr15 38652740 38652865 -47042889 + Charlie1 DNA MER1_type 2619 2749 -12 * 197 167 0 0 chr15 38654906 38654942 -47040812 + CT-rich Low_complexity Low_complexity 1 36 0 359 311 57 7 chr15 38656710 38656885 -47038869 - MIR SINE MIR -70 192 14 1889 81 0 64 chr15 38656933 38657228 -47038526 + AluSq SINE Alu 24 299 -14 26 0 0 0 chr15 38658081 38658107 -47037647 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr15 38658213 38658236 -47037518 + AT_rich Low_complexity Low_complexity 1 23 0 1367 287 97 42 chr15 38658285 38658542 -47037212 - L1MC4a LINE L1 -804 5342 5101 2028 133 0 0 chr15 38658542 38658836 -47036918 - AluSx SINE Alu -18 294 1 1367 287 97 42 chr15 38658836 38660002 -47035752 - L1MC4a LINE L1 -1045 5101 4498 23 0 0 0 chr15 38660078 38660101 -47035653 + AT_rich Low_complexity Low_complexity 1 23 0 360 298 61 24 chr15 38660153 38660379 -47035375 - L1MC4a LINE L1 -1865 4281 4054 2319 80 3 10 chr15 38660775 38661087 -47034667 + AluY SINE Alu 1 310 -1 308 216 45 8 chr15 38661193 38661327 -47034427 + (TA)n Simple_repeat Simple_repeat 1 139 0 1303 152 86 83 chr15 38662635 38662937 -47032817 + AluJb SINE Alu 1 303 -9 285 239 119 50 chr15 38663183 38663342 -47032412 - MIR3 SINE MIR -36 172 3 481 141 91 41 chr15 38663503 38663624 -47032130 + L1ME4a LINE L1 5977 6103 -18 237 306 0 0 chr15 38663727 38663789 -47031965 + MLT1L LTR MaLR 142 203 -412 416 353 18 12 chr15 38664320 38664490 -47031264 + MER91A DNA MER1_type 1 171 -25 452 292 101 36 chr15 38664971 38665139 -47030615 - MIR SINE MIR -6 256 78 225 0 0 0 chr15 38665439 38665464 -47030290 + (A)n Simple_repeat Simple_repeat 1 25 0 1704 141 39 14 chr15 38665468 38665626 -47030128 - AluSx SINE Alu -21 291 121 2181 99 7 0 chr15 38665626 38665929 -47029825 - AluSc SINE Alu -4 305 1 1704 141 39 14 chr15 38665929 38666054 -47029700 - AluSx SINE Alu -191 121 1 31 26 0 0 chr15 38667363 38667401 -47028353 + AT_rich Low_complexity Low_complexity 1 38 0 406 254 139 117 chr15 38667646 38668064 -47027690 + L2 LINE L2 2842 3268 -4 310 273 212 4 chr15 38668365 38668596 -47027158 + L1MC5 LINE L1 7644 7922 -39 1752 180 0 0 chr15 38668616 38668900 -47026854 + AluJb SINE Alu 1 284 -28 212 0 0 35 chr15 38668902 38668931 -47026823 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 2343 73 0 3 chr15 38669055 38669358 -47026396 + AluY SINE Alu 1 302 -9 308 295 116 27 chr15 38669683 38669795 -47025959 + L2 LINE L2 3191 3312 -1 1020 195 0 0 chr15 38670383 38670552 -47025202 + FAM SINE Alu 1 169 -6 378 328 46 46 chr15 38671002 38671197 -47024557 + MIR SINE MIR 47 241 -21 290 314 65 16 chr15 38671650 38671774 -47023980 - MIR3 SINE MIR -49 159 30 1251 201 206 5 chr15 38672656 38673045 -47022709 + MLT1C LTR MaLR 1 467 0 280 225 75 25 chr15 38673056 38673136 -47022618 - L2 LINE L2 -6 3307 3224 207 370 32 36 chr15 38673280 38673499 -47022255 - L2 LINE L2 -184 3088 2871 260 300 160 10 chr15 38673604 38673704 -47022050 - MIR SINE MIR -27 235 121 2020 252 118 32 chr15 38675438 38675548 -47020206 - L1MC4 LINE L1 -238 7804 7705 1756 43 0 5 chr15 38675548 38675758 -47019996 - L1PA3 LINE L1 -3 6152 5944 2020 252 118 32 chr15 38675758 38676573 -47019181 - L1MC4 LINE L1 -337 7705 6800 643 218 37 65 chr15 38676969 38677185 -47018569 + L2 LINE L2 3103 3312 -1 266 322 220 22 chr15 38677225 38677452 -47018302 + L2 LINE L2 2994 3265 -7 2978 142 23 2 chr15 38678485 38678971 -47016783 + L1MB3 LINE L1 5688 6183 0 738 260 117 17 chr15 38679376 38679607 -47016147 - MIR SINE MIR -1 261 8 1679 172 22 81 chr15 38679675 38680083 -47015671 + MLT1B LTR MaLR 4 387 -3 188 284 90 30 chr15 38680172 38680239 -47015515 - MIR3 SINE MIR -14 194 124 293 294 274 4 chr15 38680346 38680594 -47015160 - L3 LINE CR1 -143 1434 1120 266 213 0 13 chr15 38680986 38681061 -47014693 + (CA)n Simple_repeat Simple_repeat 1 74 0 317 221 130 0 chr15 38681061 38681138 -47014616 + MIR SINE MIR 63 149 -113 1661 169 19 7 chr15 38681179 38681487 -47014267 - AluJo SINE Alu 0 312 1 202 343 19 48 chr15 38682860 38682965 -47012789 - L2 LINE L2 -21 3292 3191 783 265 36 4 chr15 38683025 38683278 -47012476 + MIR SINE MIR 1 261 -1 197 246 14 101 chr15 38683781 38683850 -47011904 + L2 LINE L2 3194 3256 -16 370 148 16 0 chr15 38684526 38684587 -47011167 - MER58 DNA MER1_type 0 2420 2359 694 200 67 24 chr15 38684880 38685045 -47010709 - MER5B DNA MER1_type -6 172 1 218 273 156 32 chr15 38685582 38685736 -47010018 - L2 LINE L2 -494 2820 2648 928 184 0 7 chr15 38687547 38687699 -47008055 - Tigger3(Golem) DNA MER2_type -2 3027 2877 298 259 0 0 chr15 38687700 38687758 -47007996 - Tigger3(Golem) DNA MER2_type -2970 59 2 206 214 0 143 chr15 38687828 38687873 -47007881 + L2 LINE L2 2991 3020 -252 1957 135 0 0 chr15 38687873 38688162 -47007592 + AluSx SINE Alu 1 289 -23 206 214 0 143 chr15 38688162 38688200 -47007554 + L2 LINE L2 3020 3062 -210 22 70 0 0 chr15 38690347 38690390 -47005364 + GC_rich Low_complexity Low_complexity 1 43 0 186 71 0 0 chr15 38690436 38690464 -47005290 + (CCGGG)n Simple_repeat Simple_repeat 3 30 0 250 254 0 0 chr15 38690904 38690959 -47004795 - L2 LINE L2 -236 3036 2982 593 277 44 44 chr15 38690959 38691208 -47004546 - MIR SINE MIR -8 254 6 393 214 98 45 chr15 38691676 38691788 -47003966 - MIR3 SINE MIR -15 193 76 544 221 144 46 chr15 38691829 38692023 -47003731 - MIR SINE MIR -44 218 4 221 313 130 35 chr15 38692181 38692296 -47003458 + L2 LINE L2 3146 3271 -1 246 242 155 62 chr15 38693099 38693260 -47002494 - L3b LINE CR1 -304 1279 1104 378 268 203 0 chr15 38693859 38693997 -47001757 - L2 LINE L2 -4 3268 3103 813 309 4 9 chr15 38693999 38694229 -47001525 - MIR SINE MIR -21 241 13 188 268 188 18 chr15 38694289 38694401 -47001353 - L2 LINE L2 -191 3081 2951 972 251 52 19 chr15 38695485 38695756 -46999998 - LTR16A1 LTR ERVL -17 440 161 1630 177 10 3 chr15 38696007 38696301 -46999453 + AluJb SINE Alu 1 296 -16 1063 339 102 13 chr15 38696429 38697063 -46998691 + L3 LINE CR1 713 1403 -174 412 302 44 25 chr15 38697163 38697322 -46998432 - MER5B DNA MER1_type 0 178 17 481 281 108 6 chr15 38697530 38697697 -46998057 + MIR SINE MIR 23 206 -56 367 343 157 24 chr15 38698247 38698337 -46997417 + MER91A DNA MER1_type 1 78 -118 3833 139 20 0 chr15 38698337 38698928 -46996826 + LTR26 LTR ERV1 1 603 0 367 343 157 24 chr15 38698928 38699003 -46996751 + MER91A DNA MER1_type 78 188 -8 1069 220 191 6 chr15 38699069 38699414 -46996340 + L2 LINE L2 2376 2784 -530 320 253 55 75 chr15 38699420 38699566 -46996188 + L2 LINE L2 3171 3313 0 513 209 45 9 chr15 38700630 38700740 -46995014 - MER81 DNA DNA 0 114 1 285 268 145 14 chr15 38700956 38701094 -46994660 + MER103 DNA DNA 4 159 -7 358 245 168 32 chr15 38701893 38702048 -46993706 + MIR3 SINE MIR 17 192 -16 1258 232 47 25 chr15 38702335 38702708 -46993046 - LTR16A LTR ERVL 0 457 61 465 256 173 16 chr15 38702948 38703139 -46992615 + MIR SINE MIR 28 248 -14 180 0 0 0 chr15 38704309 38704329 -46991425 + (TTCC)n Simple_repeat Simple_repeat 2 21 0 303 304 72 48 chr15 38704354 38704479 -46991275 - L2 LINE L2 -1 3271 3144 247 274 0 0 chr15 38704638 38704689 -46991065 - L2 LINE L2 -540 2774 2724 3543 188 43 31 chr15 38704945 38705743 -46990011 + L1MB8 LINE L1 5350 6156 -22 261 0 0 0 chr15 38705773 38705802 -46989952 + (CA)n Simple_repeat Simple_repeat 2 30 0 1028 184 42 35 chr15 38707218 38707501 -46988253 - MER33 DNA MER1_type -22 302 18 1037 146 0 12 chr15 38707784 38707955 -46987799 - AluJb SINE Alu -40 272 104 214 254 0 18 chr15 38708867 38708922 -46986832 + GA-rich Low_complexity Low_complexity 2 55 0 1963 147 0 3 chr15 38709218 38709531 -46986223 - AluJb SINE Alu 0 312 1 2770 252 89 38 chr15 38709885 38710928 -46984826 - HAL1 LINE L1 -12 2495 1400 3174 148 43 21 chr15 38710930 38711394 -46984360 + MER44D DNA MER2_type 1 535 -1952 2723 138 24 0 chr15 38711394 38711814 -46983940 - MSTB1 LTR MaLR -2 430 1 3174 148 43 21 chr15 38711814 38711883 -46983871 + MER44D DNA MER2_type 535 601 -4 1797 283 152 78 chr15 38711890 38713189 -46982565 - HAL1 LINE L1 -1112 1395 1 596 301 11 0 chr15 38713189 38713372 -46982382 + MIR SINE MIR 78 262 0 202 356 113 26 chr15 38713446 38713640 -46982114 + L3b LINE CR1 1342 1552 -31 2196 75 0 14 chr15 38714568 38714863 -46980891 + AluY SINE Alu 1 291 -20 3585 145 18 29 chr15 38715518 38716172 -46979582 + L1MB7 LINE L1 5523 6169 -15 1907 125 14 0 chr15 38716173 38716461 -46979293 - AluSx SINE Alu -15 297 6 272 286 0 0 chr15 38717054 38717117 -46978637 + L2 LINE L2 3210 3272 0 519 272 49 6 chr15 38717211 38717373 -46978381 + MIR SINE MIR 92 260 -2 411 325 118 18 chr15 38717434 38717662 -46978092 + L1ME4a LINE L1 5813 6063 -58 2390 62 0 3 chr15 38717828 38718135 -46977619 + AluY SINE Alu 2 307 -4 231 303 113 21 chr15 38719520 38719662 -46976092 + L3 LINE CR1 1131 1285 -292 2205 100 3 3 chr15 38720261 38720572 -46975182 + AluSp SINE Alu 1 311 -2 714 124 297 0 chr15 38721265 38721410 -46974344 + MER5A DNA MER1_type 1 188 -1 1870 154 168 8 chr15 38723205 38723574 -46972180 - MSTA LTR MaLR 0 428 1 320 276 145 7 chr15 38723834 38723979 -46971775 + L1ME4a LINE L1 5865 6029 -92 2218 196 65 34 chr15 38724471 38724975 -46970779 - MLT2B1 LTR ERVL 0 520 1 357 208 115 35 chr15 38728071 38728204 -46967550 + MIR SINE MIR 45 196 -66 596 291 108 4 chr15 38729393 38729608 -46966146 + MIR SINE MIR 11 239 -23 215 368 11 0 chr15 38729849 38729944 -46965810 + MIR SINE MIR 39 134 -128 248 183 146 24 chr15 38731125 38731207 -46964547 - LTR33 LTR ERVL -376 145 54 275 309 149 17 chr15 38732028 38732209 -46963545 - MIR3 SINE MIR -1 207 3 614 271 13 7 chr15 38732649 38732800 -46962954 + L2 LINE L2 3162 3313 0 2154 103 7 3 chr15 38734093 38734393 -46961361 + AluSq SINE Alu 1 301 -12 686 151 221 23 chr15 38735266 38735438 -46960316 + MER96B DNA MER1_type? 171 376 -41 239 284 11 32 chr15 38736969 38737064 -46958690 - MIR SINE MIR -76 132 40 242 294 59 39 chr15 38737313 38737415 -46958339 - L3 LINE CR1 -22 1555 1452 338 332 14 2 chr15 38737536 38737666 -46958088 + MIR SINE MIR 27 157 -65 2093 153 35 72 chr15 38738933 38739418 -46956336 + MLT1C LTR MaLR 1 467 0 205 262 98 82 chr15 38739452 38739528 -46956226 - MIR SINE MIR -76 132 98 428 233 78 0 chr15 38739528 38739631 -46956123 + MER81 DNA DNA 2 112 -2 205 262 98 82 chr15 38739631 38739693 -46956061 - MIR SINE MIR -110 98 38 2518 114 22 6 chr15 38741831 38742189 -46953565 + THE1B LTR MaLR 1 364 0 246 229 16 0 chr15 38742444 38742505 -46953249 - MIR SINE MIR -63 199 138 209 300 11 67 chr15 38745531 38745621 -46950133 + MIR SINE MIR 27 111 -97 2846 94 3 0 chr15 38746069 38746432 -46949322 + THE1B LTR MaLR 1 364 0 184 324 60 108 chr15 38746721 38747184 -46948570 + L2 LINE L2 2818 3258 -14 509 260 81 23 chr15 38747191 38747364 -46948390 + MIR3 SINE MIR 15 197 -11 318 268 134 38 chr15 38748324 38748481 -46947273 - MIR3 SINE MIR -17 191 20 450 0 0 0 chr15 38752793 38752843 -46942911 + (TG)n Simple_repeat Simple_repeat 2 51 0 318 282 38 46 chr15 38753285 38753416 -46942338 + MIR3 SINE MIR 76 205 -3 309 183 33 0 chr15 38753878 38753938 -46941816 + MIR SINE MIR 88 149 -59 335 267 92 62 chr15 38753938 38754124 -46941630 - MER112 DNA MER1_type -12 248 52 1989 139 7 0 chr15 38754124 38754426 -46941328 - AluSx SINE Alu -8 304 1 335 267 92 62 chr15 38754426 38754479 -46941275 - MER112 DNA MER1_type -208 52 2 401 294 0 0 chr15 38755348 38755450 -46940304 + MIR SINE MIR 106 207 -55 238 208 236 0 chr15 38756280 38756352 -46939402 + MIR3 SINE MIR 110 198 -10 224 290 145 36 chr15 38756814 38757007 -46938747 - MIR SINE MIR -6 256 43 313 251 55 55 chr15 38758016 38758179 -46937575 + MIR SINE MIR 24 186 -76 277 239 33 43 chr15 38761045 38761137 -46934617 + MER5B DNA MER1_type 88 178 0 880 157 131 30 chr15 38763553 38763751 -46932003 - MER20 DNA MER1_type -1 218 1 824 140 0 44 chr15 38764250 38764386 -46931368 - FLAM_A SINE Alu -3 130 1 21 0 0 0 chr15 38764391 38764412 -46931342 + AT_rich Low_complexity Low_complexity 1 21 0 1325 226 75 47 chr15 38764516 38764901 -46930853 + MSTD LTR MaLR 1 396 0 1156 198 0 35 chr15 38765748 38765980 -46929774 + MER58A DNA MER1_type 1 224 0 493 276 125 5 chr15 38765980 38766161 -46929593 - MIR SINE MIR -39 223 16 2587 64 0 3 chr15 38766216 38766528 -46929226 - AluY SINE Alu 0 311 1 4325 159 70 36 chr15 38767395 38767954 -46927800 + L1MB7 LINE L1 4745 5283 -901 1990 157 3 0 chr15 38767954 38768253 -46927501 + AluSx SINE Alu 1 300 -12 4325 159 70 36 chr15 38768253 38768583 -46927171 + L1MB7 LINE L1 5283 5600 -584 2357 94 0 3 chr15 38768583 38768882 -46926872 + AluSq SINE Alu 1 298 -15 4325 159 70 36 chr15 38768882 38769102 -46926652 + L1MB7 LINE L1 5600 5811 -373 426 20 0 0 chr15 38769102 38769153 -46926601 + (CA)n Simple_repeat Simple_repeat 1 51 0 4325 159 70 36 chr15 38769153 38769451 -46926303 + L1MB7 LINE L1 5811 6184 0 974 259 108 16 chr15 38770722 38771092 -46924662 + L1MC4a LINE L1 5425 5828 -1980 275 293 85 30 chr15 38772000 38772164 -46923590 + MIR SINE MIR 20 192 -70 562 201 215 0 chr15 38773506 38773650 -46922104 - MER5A DNA MER1_type -6 183 9 321 357 6 23 chr15 38774383 38774554 -46921200 + MIR3 SINE MIR 39 206 -2 1206 163 58 23 chr15 38775228 38775486 -46920268 + L1MB7 LINE L1 5902 6168 -16 203 206 29 73 chr15 38775583 38775651 -46920103 + MIR SINE MIR 186 250 -12 1324 230 100 24 chr15 38777526 38777895 -46917859 + MLT1I LTR MaLR 1 397 -12 495 336 15 39 chr15 38778005 38778245 -46917509 + MIR SINE MIR 11 248 -14 195 42 0 0 chr15 38778266 38778290 -46917464 + (CAT)n Simple_repeat Simple_repeat 3 26 0 2681 85 6 6 chr15 38778447 38778800 -46916954 + THE1A LTR MaLR 1 353 -2 303 224 75 45 chr15 38779439 38779573 -46916181 + MIR3 SINE MIR 6 143 -65 394 313 128 19 chr15 38780004 38780269 -46915485 - L3 LINE CR1 -94 1483 1190 568 266 18 48 chr15 38780978 38781207 -46914547 - MIR SINE MIR -13 249 28 393 203 0 0 chr15 38781905 38781979 -46913775 - MIR3 SINE MIR -53 155 82 316 203 34 102 chr15 38782790 38782870 -46912884 - MER103 DNA DNA -44 122 51 2144 120 27 0 chr15 38782870 38783169 -46912585 + AluSx SINE Alu 1 307 -5 316 203 34 102 chr15 38783169 38783206 -46912548 - MER103 DNA DNA -115 51 13 417 276 81 69 chr15 38783218 38783638 -46912116 + L2 LINE L2 2553 2977 -337 247 65 43 0 chr15 38783853 38783899 -46911855 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 954 134 0 9 chr15 38783903 38784163 -46911591 + AluJb SINE Alu 1 303 -9 396 289 118 20 chr15 38785530 38785734 -46910020 - MIR SINE MIR -35 227 4 1239 112 0 78 chr15 38785819 38786024 -46909730 - MER1B DNA MER1_type 0 339 151 376 183 0 0 chr15 38786021 38786081 -46909673 - MER1B DNA MER1_type -276 61 2 * 681 261 58 13 chr15 38788837 38789063 -46906691 - L3 LINE CR1 -757 820 585 1012 123 11 48 chr15 38790351 38790538 -46905216 - L1MC3 LINE L1 -194 7591 7412 265 189 0 0 chr15 38790678 38790731 -46905023 - L1MC3 LINE L1 -686 7099 7047 3738 177 82 58 chr15 38791126 38792047 -46903707 - L1MC3 LINE L1 -18 7767 6824 228 330 119 0 chr15 38792117 38792235 -46903519 - MIR3 SINE MIR -11 197 66 936 199 11 0 chr15 38792714 38792913 -46902841 + L1M4 LINE L1 4868 5068 -1078 24 0 0 0 chr15 38792990 38793014 -46902740 + AT_rich Low_complexity Low_complexity 1 24 0 2272 182 55 0 chr15 38793915 38794527 -46901227 + L1M4 LINE L1 5040 5690 -494 7598 207 72 54 chr15 38797043 38797512 -46898242 + L1MC/D LINE L1 2673 3132 -3110 2770 51 23 3 chr15 38797512 38797862 -46897892 + L1PA8 LINE L1 5816 6172 0 7598 207 72 54 chr15 38797862 38799326 -46896428 + L1MC/D LINE L1 3132 4568 -1674 2262 124 0 6 chr15 38799326 38799641 -46896113 + AluSq SINE Alu 1 313 0 7598 207 72 54 chr15 38799641 38800165 -46895589 + L1MC/D LINE L1 4568 5081 -1161 261 0 0 0 chr15 38800165 38800194 -46895560 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7598 207 72 54 chr15 38800194 38800673 -46895081 + L1MC/D LINE L1 5081 5678 -564 2812 172 51 12 chr15 38800713 38801300 -46894454 + L1MD1 LINE L1 5633 6242 0 198 0 0 0 chr15 38801326 38801348 -46894406 + (A)n Simple_repeat Simple_repeat 1 22 0 2126 129 0 7 chr15 38801869 38802163 -46893591 - AluSx SINE Alu -6 306 15 2189 138 0 0 chr15 38802726 38803031 -46892723 - AluSx SINE Alu -7 305 1 1736 170 14 0 chr15 38803474 38803762 -46891992 + AluJb SINE Alu 1 292 -20 213 160 60 20 chr15 38805909 38805959 -46889795 + L2 LINE L2 3262 3313 0 237 329 55 76 chr15 38806092 38806381 -46889373 + L2 LINE L2 2947 3229 -43 401 0 20 0 chr15 38806876 38806925 -46888829 + (CA)n Simple_repeat Simple_repeat 2 51 0 279 191 32 0 chr15 38806945 38807008 -46888746 - MER20 DNA MER1_type -4 215 151 2282 205 45 66 chr15 38808090 38808202 -46887552 - MLT1F LTR MaLR 0 542 429 2341 109 0 3 chr15 38808202 38808515 -46887239 + AluSx SINE Alu 1 312 0 2282 205 45 66 chr15 38808515 38808934 -46886820 - MLT1F LTR MaLR -113 429 22 287 290 88 51 chr15 38809990 38810280 -46885474 + L2 LINE L2 2758 3058 -214 637 209 16 8 chr15 38810324 38810453 -46885301 - FLAM_A SINE Alu -2 131 2 241 333 0 0 chr15 38810506 38810584 -46885170 + L2 LINE L2 3193 3270 -2 257 340 75 34 chr15 38811627 38811774 -46883980 + L2 LINE L2 3116 3268 -4 246 105 0 0 chr15 38812140 38812178 -46883576 + (A)n Simple_repeat Simple_repeat 1 38 0 2334 125 22 33 chr15 38813346 38813714 -46882040 - THE1B LTR MaLR 0 364 1 294 29 0 0 chr15 38813827 38813862 -46881892 + (CA)n Simple_repeat Simple_repeat 2 36 0 1910 159 30 0 chr15 38813888 38814217 -46881537 + AluSx SINE Alu 2 339 0 1020 210 81 66 chr15 38814223 38814428 -46881326 - L1MC5 LINE L1 -49 7912 7711 2174 132 0 0 chr15 38814428 38814731 -46881023 + AluSq SINE Alu 1 303 -10 1020 210 81 66 chr15 38814731 38814934 -46880820 - L1MC5 LINE L1 -250 7711 7498 247 309 101 118 chr15 38814967 38815333 -46880421 + L2 LINE L2 2900 3259 -13 210 300 276 33 chr15 38815737 38815947 -46879807 - L2 LINE L2 0 3272 3012 1990 124 0 0 chr15 38816767 38817034 -46878720 + AluSx SINE Alu 41 307 -5 21 0 0 0 chr15 38817132 38817153 -46878601 + AT_rich Low_complexity Low_complexity 1 21 0 2079 132 0 7 chr15 38817366 38817662 -46878092 + AluSx SINE Alu 1 294 -18 623 56 0 22 chr15 38817663 38817752 -46878002 + (GGAAA)n Simple_repeat Simple_repeat 4 90 0 21 36 0 0 chr15 38818015 38818043 -46877711 + AT_rich Low_complexity Low_complexity 1 28 0 798 185 11 121 chr15 38818060 38818325 -46877429 + MER102b DNA MER1_type 104 339 -2 221 323 40 24 chr15 38818703 38818827 -46876927 - L2 LINE L2 -527 2787 2662 2290 136 47 8 chr15 38821596 38821957 -46873797 + THE1C LTR MaLR 1 375 0 443 344 148 30 chr15 38822020 38822831 -46872923 + L2 LINE L2 1763 2669 -645 254 311 87 50 chr15 38824308 38824469 -46871285 - MIR SINE MIR -86 176 10 2065 152 39 39 chr15 38824555 38824916 -46870838 + THE1B LTR MaLR 4 364 0 22 56 0 0 chr15 38825893 38825929 -46869825 + AT_rich Low_complexity Low_complexity 1 36 0 385 81 81 0 chr15 38825929 38825991 -46869763 - MER41B LTR ERV1 -88 547 481 356 282 166 25 chr15 38827141 38827418 -46868336 + L1ME4a LINE L1 5633 5948 -173 764 272 73 0 chr15 38829120 38829326 -46866428 + MER58A DNA MER1_type 4 224 0 201 245 0 57 chr15 38830804 38830857 -46864897 - MIR3 SINE MIR -151 57 8 308 270 0 56 chr15 38831033 38831122 -46864632 + L2 LINE L2 3007 3090 -182 224 320 78 29 chr15 38831470 38831573 -46864181 + L2 LINE L2 3153 3260 -12 451 274 78 87 chr15 38831573 38831807 -46863947 + L1ME3 LINE L1 35 270 -5935 4796 180 24 28 chr15 38831807 38831843 -46863911 + L1MC1 LINE L1 5405 5440 -893 2075 127 3 0 chr15 38831843 38832134 -46863620 + AluSx SINE Alu 1 292 -20 4796 180 24 28 chr15 38832134 38833024 -46862730 + L1MC1 LINE L1 5440 6327 -6 451 274 78 87 chr15 38833024 38833750 -46862004 + L1ME3 LINE L1 270 936 -5269 2145 139 3 0 chr15 38833750 38834052 -46861702 - AluSx SINE Alu -9 303 1 451 274 78 87 chr15 38834052 38834154 -46861600 + L1ME3 LINE L1 936 1037 -5168 1458 167 4 17 chr15 38834154 38834394 -46861360 - AluJo SINE Alu -75 237 1 706 311 74 13 chr15 38834498 38834562 -46861192 + L1ME3 LINE L1 1102 1161 -5235 377 39 20 0 chr15 38834562 38834613 -46861141 + (CA)n Simple_repeat Simple_repeat 2 53 0 706 311 74 13 chr15 38834613 38835005 -46860749 + L1ME3 LINE L1 1161 1586 -4810 239 300 10 10 chr15 38835075 38835175 -46860579 + L1ME3 LINE L1 1696 1795 -4601 * 996 268 77 11 chr15 38835173 38835550 -46860204 + L1ME3 LINE L1 4486 4887 -1328 1503 273 60 53 chr15 38835551 38836217 -46859537 + L1ME3 LINE L1 5561 6231 0 1728 163 10 7 chr15 38837139 38837434 -46858320 - AluJo SINE Alu -11 301 6 1749 241 72 30 chr15 38837931 38838474 -46857280 + L1ME3 LINE L1 5597 6162 0 1823 161 14 0 chr15 38839500 38839785 -46855969 + AluJb SINE Alu 1 289 -23 207 0 0 0 chr15 38840215 38840238 -46855516 + (T)n Simple_repeat Simple_repeat 1 23 0 2112 144 0 0 chr15 38840752 38841051 -46854703 + AluSx SINE Alu 1 299 -13 201 317 61 12 chr15 38841371 38841453 -46854301 - MIR SINE MIR -76 132 47 519 220 130 6 chr15 38842138 38842292 -46853462 + MIR SINE MIR 62 233 -29 270 0 0 0 chr15 38844771 38844801 -46850953 + (T)n Simple_repeat Simple_repeat 1 30 0 425 299 41 21 chr15 38845615 38845809 -46849945 - L1M4 LINE L1 -2911 3235 3038 579 319 32 19 chr15 38846074 38846290 -46849464 - MLT1J LTR MaLR -292 219 1 311 332 59 59 chr15 38846290 38846679 -46849075 - L1M4 LINE L1 -3189 2957 2569 26 0 0 0 chr15 38846895 38846921 -46848833 + AT_rich Low_complexity Low_complexity 1 26 0 189 0 0 0 chr15 38846992 38847013 -46848741 + (A)n Simple_repeat Simple_repeat 1 21 0 329 266 102 50 chr15 38847162 38848758 -46846996 - HAL1 LINE L1 -343 2164 420 227 319 77 11 chr15 38848986 38849077 -46846677 - HAL1 LINE L1 -2371 136 40 1684 94 22 0 chr15 38850576 38850799 -46844955 + MER30 DNA MER1_type 3 230 0 2062 125 0 7 chr15 38851401 38851696 -46844058 + AluSx SINE Alu 1 293 -19 1768 145 7 10 chr15 38852315 38852604 -46843150 + AluJo SINE Alu 1 288 -24 211 321 0 0 chr15 38852795 38852851 -46842903 + L2 LINE L2 3217 3272 0 424 305 25 40 chr15 38852892 38853092 -46842662 - MER117 DNA MER1_type 0 197 1 2316 110 0 0 chr15 38853372 38853681 -46842073 - AluSc SINE Alu 0 309 1 408 249 139 117 chr15 38855651 38856069 -46839685 + L2 LINE L2 2842 3268 -4 314 276 217 0 chr15 38856382 38856599 -46839155 + L1MC5 LINE L1 7659 7922 -39 1868 180 0 0 chr15 38856619 38856903 -46838851 + AluJb SINE Alu 1 284 -28 180 0 0 0 chr15 38856905 38856925 -46838829 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 921 124 149 25 chr15 38857058 38857219 -46838535 + AluSq SINE Alu 1 181 -132 180 0 0 0 chr15 38858048 38858068 -46837686 + (TTCC)n Simple_repeat Simple_repeat 2 21 0 260 304 72 48 chr15 38858093 38858218 -46837536 - L2 LINE L2 -1 3271 3144 226 274 0 0 chr15 38858377 38858428 -46837326 - L2 LINE L2 -540 2774 2724 3587 188 43 31 chr15 38858684 38859482 -46836272 + L1MB8 LINE L1 5350 6156 -22 225 0 0 0 chr15 38859512 38859537 -46836217 + (CA)n Simple_repeat Simple_repeat 2 26 0 1049 184 42 35 chr15 38860953 38861236 -46834518 - MER33 DNA MER1_type -22 302 18 1102 149 0 22 chr15 38861511 38861692 -46834062 - AluJb SINE Alu -34 278 102 214 254 0 18 chr15 38862602 38862657 -46833097 + GA-rich Low_complexity Low_complexity 2 55 0 1920 166 0 6 chr15 38862953 38863266 -46832488 - AluJb SINE Alu 0 312 2 258 32 0 0 chr15 38863292 38863323 -46832431 + (TG)n Simple_repeat Simple_repeat 2 32 0 2211 125 22 33 chr15 38863436 38863804 -46831950 + THE1B LTR MaLR 1 364 0 246 105 0 0 chr15 38864974 38865012 -46830742 + (T)n Simple_repeat Simple_repeat 1 38 0 215 340 75 34 chr15 38865378 38865525 -46830229 - L2 LINE L2 -4 3268 3116 852 191 60 0 chr15 38866858 38867026 -46828728 - MER5B DNA MER1_type 0 178 1 2399 99 0 3 chr15 38867905 38868219 -46827535 - AluSq SINE Alu 0 313 1 2199 95 17 3 chr15 38869574 38869870 -46825884 - AluSx SINE Alu -12 300 1 345 278 74 28 chr15 38870651 38870827 -46824927 - MIR SINE MIR -14 248 65 372 177 127 0 chr15 38871028 38871107 -46824647 - 5S rRNA rRNA -31 90 2 2219 126 3 0 chr15 38871192 38871494 -46824260 + AluSx SINE Alu 1 303 -9 609 269 25 35 chr15 38872019 38872220 -46823534 - MIR SINE MIR -16 246 48 21 57 0 0 chr15 38872220 38872255 -46823499 + AT_rich Low_complexity Low_complexity 1 35 0 908 206 129 101 chr15 38872267 38872628 -46823126 - L1ME2 LINE L1 -131 6031 5641 2105 130 16 0 chr15 38872628 38872935 -46822819 - AluSx SINE Alu 0 312 1 908 206 129 101 chr15 38872935 38873142 -46822612 - L1ME2 LINE L1 -521 5641 5441 289 351 90 8 chr15 38873206 38873340 -46822414 - L2 LINE L2 -16 3256 3112 2224 117 0 0 chr15 38874142 38874442 -46821312 - AluSg SINE Alu -9 301 2 362 231 56 44 chr15 38874488 38874648 -46821106 - L1ME4a LINE L1 -16 6105 5944 413 163 35 12 chr15 38875329 38875415 -46820339 - L1MA5 LINE L1 0 6300 6213 749 221 194 5 chr15 38875509 38875726 -46820028 - L1MA5A LINE L1 -86 6211 5954 690 147 0 96 chr15 38876085 38876221 -46819533 + FLAM_C SINE Alu 2 124 -19 1639 167 31 21 chr15 38876361 38876649 -46819105 - AluJo SINE Alu -17 295 5 34 0 0 0 chr15 38876896 38876930 -46818824 + AT_rich Low_complexity Low_complexity 1 34 0 2219 123 7 3 chr15 38877093 38877394 -46818360 - AluSx SINE Alu -10 302 1 1133 158 0 5 chr15 38877462 38877652 -46818102 - AluJo SINE Alu -2 310 122 405 354 128 10 chr15 38878335 38878844 -46816910 - L2 LINE L2 -12 3301 2733 185 270 20 40 chr15 38878845 38878945 -46816809 - L2 LINE L2 -1099 2215 2118 * 300 273 0 11 chr15 38878932 38879020 -46816734 + MER5A DNA MER1_type 17 103 -86 437 344 46 12 chr15 38879047 38879370 -46816384 - L2 LINE L2 -1171 2143 1810 233 297 0 0 chr15 38880614 38880688 -46815066 + A-rich Low_complexity Low_complexity 1 74 0 1803 174 20 64 chr15 38881527 38881918 -46813836 - MLT1A2 LTR MaLR 0 374 1 7535 154 83 32 chr15 38882102 38883606 -46812148 + L1MC3 LINE L1 6203 7783 -2 2364 71 3 14 chr15 38883625 38883920 -46811834 + AluSg SINE Alu 1 292 -18 237 287 156 16 chr15 38885101 38885223 -46810531 + L2 LINE L2 3134 3272 0 2062 134 37 0 chr15 38885360 38885659 -46810095 + AluSx SINE Alu 1 310 -2 619 257 131 5 chr15 38885731 38885953 -46809801 - MIR SINE MIR 0 262 13 288 306 63 9 chr15 38886989 38887100 -46808654 + L3 LINE CR1 334 450 -1127 213 267 15 107 chr15 38887126 38887257 -46808497 - L2 LINE L2 -9 3263 3145 1658 185 80 25 chr15 38887347 38887709 -46808045 - MLT1D LTR MaLR -121 384 3 230 307 11 23 chr15 38887910 38887998 -46807756 - MIR SINE MIR -164 98 12 223 330 36 9 chr15 38888005 38888117 -46807637 + L3 LINE CR1 714 828 -749 254 25 0 50 chr15 38888199 38888239 -46807515 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1528 147 7 50 chr15 38889315 38889614 -46806140 + AluJo SINE Alu 1 286 -26 474 204 0 0 chr15 38889614 38889717 -46806037 + GA-rich Low_complexity Low_complexity 2 104 0 2286 91 10 3 chr15 38889743 38890040 -46805714 + AluSg SINE Alu 1 299 -11 639 303 26 46 chr15 38890073 38890380 -46805374 + L3 LINE CR1 1214 1514 -63 2235 119 3 3 chr15 38891157 38891467 -46804287 + AluSx SINE Alu 1 310 -2 294 337 205 0 chr15 38892543 38892733 -46803021 - MIR SINE MIR -6 256 28 221 339 69 13 chr15 38893249 38893482 -46802272 + L2 LINE L2 2459 2704 -610 2269 120 0 7 chr15 38894040 38894348 -46801406 + AluSx SINE Alu 4 309 -3 377 305 63 21 chr15 38894484 38894674 -46801080 - L1MC4a LINE L1 -1878 5930 5733 305 310 35 18 chr15 38894808 38894921 -46800833 + MER5A DNA MER1_type 63 177 -12 1169 219 108 84 chr15 38895166 38895499 -46800255 + MLT1J LTR MaLR 1 351 -160 2653 129 44 5 chr15 38895499 38895909 -46799845 + MSTB LTR MaLR 1 426 0 1169 219 108 84 chr15 38895909 38896073 -46799681 + MLT1J LTR MaLR 351 510 -1 198 235 12 86 chr15 38896081 38896162 -46799592 + L2 LINE L2 3225 3299 -14 442 233 83 45 chr15 38898294 38898427 -46797327 + MIR SINE MIR 16 153 -109 595 163 51 0 chr15 38898512 38898610 -46797144 - U6 snRNA snRNA -2 105 3 957 50 44 12 chr15 38899171 38899331 -46796423 + (TTTC)n Simple_repeat Simple_repeat 4 168 0 460 267 124 73 chr15 38899407 38899945 -46795809 - L2 LINE L2 -1 3312 2728 968 175 17 79 chr15 38900839 38901079 -46794675 + AluJb SINE Alu 2 226 -86 322 311 38 0 chr15 38901194 38901300 -46794454 + MIR SINE MIR 42 151 -111 1006 186 27 5 chr15 38901301 38901322 -46794432 + AluJb SINE Alu 111 130 -182 2174 68 28 86 chr15 38901322 38901647 -46794107 + AluSp SINE Alu 1 306 -7 1006 186 27 5 chr15 38901647 38901813 -46793941 + AluJb SINE Alu 130 302 -10 210 184 0 0 chr15 38901813 38901851 -46793903 + MIR SINE MIR 192 229 -33 455 257 128 80 chr15 38903854 38904103 -46791651 + MLT1L LTR MaLR 308 568 -47 254 207 35 81 chr15 38904182 38904269 -46791485 - L1MC4a LINE L1 -537 5584 5502 236 348 81 2 chr15 38904562 38904729 -46791025 + MIR3 SINE MIR 5 185 -54 448 291 26 101 chr15 38905204 38905582 -46790172 + MLT1H LTR MaLR 39 388 -161 2250 121 0 3 chr15 38905628 38905933 -46789821 + AluSx SINE Alu 1 304 -8 309 123 0 0 chr15 38906434 38906491 -46789263 - AluSp/q SINE Alu -3 300 244 22 35 0 0 chr15 38906688 38906717 -46789037 + AT_rich Low_complexity Low_complexity 1 29 0 1675 171 1 38 chr15 38908455 38908832 -46786922 + L1MB5 LINE L1 5812 6180 0 576 272 6 25 chr15 38909042 38909200 -46786554 - MIR SINE MIR -106 156 2 1021 200 27 32 chr15 38909814 38910034 -46785720 - MER20 DNA MER1_type 0 219 1 190 204 136 0 chr15 38910059 38910103 -46785651 - MIR SINE MIR -90 172 123 1519 143 98 4 chr15 38910247 38910492 -46785262 - AluSx SINE Alu -44 268 1 196 208 21 0 chr15 38910937 38910985 -46784769 - L2 LINE L2 -1 3312 3264 362 276 159 7 chr15 38911242 38911387 -46784367 + MIR SINE MIR 12 178 -84 1753 148 7 54 chr15 38911805 38912148 -46783606 + AluJb SINE Alu 1 329 0 2231 119 0 10 chr15 38912149 38912459 -46783295 + AluY SINE Alu 4 310 -1 28 79 0 0 chr15 38914041 38914104 -46781650 + GC_rich Low_complexity Low_complexity 1 63 0 219 158 26 0 chr15 38914502 38914540 -46781214 - L2 LINE L2 -13 3300 3262 235 304 43 0 chr15 38914597 38914666 -46781088 - MIR SINE MIR -92 116 45 295 277 24 0 chr15 38914701 38914784 -46780970 + MIR SINE MIR 62 146 -116 2344 89 13 0 chr15 38914836 38915139 -46780615 - AluSq SINE Alu -6 307 1 536 115 13 0 chr15 38915236 38915314 -46780440 + MADE1 DNA Mariner 2 80 0 1690 154 12 71 chr15 38915800 38915949 -46779805 + AluJb SINE Alu 3 124 -188 483 18 0 0 chr15 38915949 38916005 -46779749 + (CA)n Simple_repeat Simple_repeat 1 56 0 1690 154 12 71 chr15 38916005 38916179 -46779575 + AluJb SINE Alu 124 307 -5 496 213 6 33 chr15 38916185 38916368 -46779386 + GA-rich Low_complexity Low_complexity 3 180 0 * 716 92 0 82 chr15 38916349 38916545 -46779209 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 2305 121 0 6 chr15 38917600 38917913 -46777841 + AluSx SINE Alu 1 311 -1 317 327 63 16 chr15 38918143 38918397 -46777357 - LTR16C LTR ERVL 0 491 226 418 288 124 57 chr15 38918556 38918910 -46776844 + LTR41 LTR ERVL 231 608 -165 352 299 203 32 chr15 38919215 38919466 -46776288 + L2 LINE L2 2977 3270 -2 2177 86 7 0 chr15 38919710 38920013 -46775741 + AluSq SINE Alu 5 309 0 2250 86 7 0 chr15 38920028 38920358 -46775396 + AluSx SINE Alu 1 332 0 2023 162 0 16 chr15 38921078 38921393 -46774361 + AluJb SINE Alu 1 310 -2 2417 102 0 0 chr15 38921588 38921891 -46773863 + AluSx SINE Alu 1 303 -9 1330 177 4 17 chr15 38922239 38922476 -46773278 + AluJb SINE Alu 78 311 -1 213 214 71 0 chr15 38922478 38922534 -46773220 - MIR SINE MIR -82 180 121 1725 162 3 69 chr15 38923313 38923647 -46772107 + AluJo SINE Alu 1 312 0 2384 88 3 3 chr15 38923906 38924211 -46771543 - AluSx SINE Alu -5 307 3 2265 128 3 3 chr15 38924213 38924525 -46771229 - AluSx SINE Alu 0 312 1 352 164 14 41 chr15 38924545 38924618 -46771136 + ORSL DNA AcHobo 2 72 -203 844 166 0 21 chr15 38924623 38924768 -46770986 - FLAM_C SINE Alu -1 142 1 865 159 53 11 chr15 38924773 38924962 -46770792 + ORSL DNA AcHobo 79 275 0 502 219 51 118 chr15 38924972 38925027 -46770727 + MER5B DNA MER1_type 3 60 -118 2706 36 3 0 chr15 38925027 38925333 -46770421 + AluY SINE Alu 1 307 -4 502 219 51 118 chr15 38925333 38925455 -46770299 + MER5B DNA MER1_type 60 168 -10 188 217 29 58 chr15 38925739 38925808 -46769946 - L2 LINE L2 -629 2685 2619 438 337 29 12 chr15 38977435 38977607 -46718147 + MIR SINE MIR 75 249 -13 949 188 83 0 chr15 38980337 38980529 -46715225 + MER3 DNA MER1_type 2 209 0 200 148 0 66 chr15 38981269 38981302 -46714452 + (TTAA)n Simple_repeat Simple_repeat 4 33 -27 1283 31 0 6 chr15 38981302 38981462 -46714292 + L1PA4 LINE L1 5997 6155 0 200 148 0 66 chr15 38981462 38981489 -46714265 + (TTAA)n Simple_repeat Simple_repeat 33 60 0 2347 77 0 37 chr15 38981777 38982100 -46713654 + AluY SINE Alu 1 311 0 252 0 0 0 chr15 38983650 38983678 -46712076 + (A)n Simple_repeat Simple_repeat 1 28 0 362 293 169 26 chr15 38984052 38984273 -46711481 + MIR SINE MIR 10 256 -6 27 0 0 0 chr15 38985870 38985897 -46709857 + AT_rich Low_complexity Low_complexity 1 27 0 1428 177 75 11 chr15 38986679 38986944 -46708810 - AluJo SINE Alu -20 292 11 216 0 0 0 chr15 38987268 38987292 -46708462 + (TA)n Simple_repeat Simple_repeat 1 24 0 1584 163 17 30 chr15 38987295 38987595 -46708159 - AluJo SINE Alu -16 296 1 1095 190 0 0 chr15 38987844 38988023 -46707731 + MER58A DNA MER1_type 45 223 -1 189 0 0 0 chr15 38988407 38988428 -46707326 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 2266 102 0 0 chr15 38989190 38989493 -46706261 + AluSg SINE Alu 1 303 -7 1763 148 24 14 chr15 38990086 38990383 -46705371 - AluJo SINE Alu -2 310 11 198 0 0 0 chr15 38992024 38992046 -46703708 + (A)n Simple_repeat Simple_repeat 1 22 0 1175 121 6 0 chr15 38992536 38992710 -46703044 + AluSg/x SINE Alu 128 302 -10 2651 237 59 52 chr15 38992721 38993322 -46702432 - L1M4 LINE L1 -2687 3459 2864 1457 148 89 44 chr15 38993322 38993592 -46702162 - AluJo SINE Alu -25 287 6 2651 237 59 52 chr15 38993592 38993622 -46702132 - L1M4 LINE L1 -3282 2864 2836 1104 186 14 0 chr15 38993622 38993842 -46701912 - L1PA14 LINE L1 0 6161 5939 2651 237 59 52 chr15 38993842 38994258 -46701496 - L1M4 LINE L1 -3310 2836 2403 239 343 0 0 chr15 38995405 38995475 -46700279 + MER5A DNA MER1_type 7 76 -113 798 172 0 0 chr15 38995476 38995604 -46700150 + FLAM_C SINE Alu 3 130 -3 1045 146 13 0 chr15 38995705 38995863 -46699891 - AluJo SINE Alu -152 160 1 352 305 79 45 chr15 38996098 38996275 -46699479 + L2 LINE L2 3108 3290 -23 1108 101 63 13 chr15 38996930 38997088 -46698666 - AluSg/x SINE Alu -13 297 132 2078 101 7 0 chr15 38997088 38997375 -46698379 - AluSp SINE Alu -7 306 18 357 361 81 47 chr15 38997453 38997774 -46697980 + L2 LINE L2 2939 3270 -2 279 79 0 0 chr15 38999276 38999314 -46696440 + (CA)n Simple_repeat Simple_repeat 2 39 0 507 206 37 136 chr15 39000976 39001219 -46694535 + MIR SINE MIR 4 222 -40 188 143 0 29 chr15 39001296 39001331 -46694423 - L2 LINE L2 -8 3264 3231 1262 179 84 34 chr15 39002687 39002984 -46692770 + AluJb SINE Alu 1 312 0 1616 181 0 17 chr15 39002986 39003284 -46692470 + AluJb SINE Alu 1 293 -19 328 305 21 0 chr15 39003294 39003389 -46692365 - L1MC4 LINE L1 -1339 6703 6607 300 125 25 100 chr15 39003407 39003487 -46692267 - L1MCa LINE L1 -4358 2068 1995 247 113 38 0 chr15 39003490 39003543 -46692211 + (TA)n Simple_repeat Simple_repeat 2 56 0 198 0 0 0 chr15 39005989 39006011 -46689743 + (A)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chr15 39007745 39007780 -46687974 + AT_rich Low_complexity Low_complexity 1 35 0 1241 111 17 0 chr15 39008015 39008196 -46687558 - AluSg/x SINE Alu 0 312 129 2052 153 0 0 chr15 39008191 39008492 -46687262 - AluSx SINE Alu -11 301 1 267 236 87 42 chr15 39008494 39008690 -46687064 - L1ME LINE L1 -377 5785 5576 383 271 122 0 chr15 39010696 39010803 -46684951 + MLT1L LTR MaLR 150 269 -346 414 327 6 6 chr15 39011629 39011797 -46683957 + (TGG)n Simple_repeat Simple_repeat 1 168 0 2074 118 0 13 chr15 39014175 39014479 -46681275 + AluSx SINE Alu 1 300 -12 1787 182 0 0 chr15 39014765 39015051 -46680703 + AluJo SINE Alu 6 291 -21 452 293 78 10 chr15 39015852 39016057 -46679697 + MARNA DNA Mariner 167 385 -201 1579 161 82 4 chr15 39016264 39016531 -46679223 - AluSx SINE Alu -23 289 2 1926 155 3 0 chr15 39016933 39017224 -46678530 - AluSx SINE Alu -16 296 5 25 0 0 0 chr15 39017908 39017933 -46677821 + AT_rich Low_complexity Low_complexity 1 25 0 315 0 0 0 chr15 39018076 39018111 -46677643 + (A)n Simple_repeat Simple_repeat 1 35 0 302 80 20 0 chr15 39019457 39019507 -46676247 + (CA)n Simple_repeat Simple_repeat 1 51 0 2443 68 0 16 chr15 39020844 39021153 -46674601 + AluSx SINE Alu 1 304 -8 234 125 0 0 chr15 39023580 39023620 -46672134 + MADE1 DNA Mariner 41 80 0 23 0 0 0 chr15 39024150 39024173 -46671581 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 39024287 39024309 -46671445 + AT_rich Low_complexity Low_complexity 1 22 0 420 286 7 21 chr15 39027984 39028124 -46667630 + MIR3 SINE MIR 20 157 -51 1670 167 28 0 chr15 39028292 39028574 -46667180 + AluJo SINE Alu 1 290 -22 431 35 18 0 chr15 39028861 39028918 -46666836 + (TG)n Simple_repeat Simple_repeat 2 59 0 1964 131 0 0 chr15 39028923 39029198 -46666556 - AluSx SINE Alu -37 275 1 744 148 0 70 chr15 39029444 39029586 -46666168 - FLAM_C SINE Alu 0 133 2 1385 277 127 5 chr15 39030638 39031321 -46664433 - L2 LINE L2 -1 3312 2538 1857 157 0 26 chr15 39031854 39032160 -46663594 + AluJo SINE Alu 1 298 -14 2056 135 0 7 chr15 39032184 39032488 -46663266 + AluJb SINE Alu 1 302 -10 2195 103 3 7 chr15 39032537 39032838 -46662916 + AluSg1 SINE Alu 1 300 -9 219 380 43 0 chr15 39032841 39032933 -46662821 + L2 LINE L2 3208 3303 -10 2178 103 0 32 chr15 39033173 39033484 -46662270 - AluSq SINE Alu -12 301 1 22 0 0 0 chr15 39033484 39033506 -46662248 + AT_rich Low_complexity Low_complexity 1 22 0 1419 183 0 56 chr15 39033747 39034031 -46661723 - AluJo SINE Alu -15 297 30 357 139 0 0 chr15 39034125 39034187 -46661567 - AluSc SINE Alu -83 216 169 695 87 19 0 chr15 39034187 39034291 -46661463 + AluSg/x SINE Alu 205 310 0 1217 119 0 0 chr15 39034488 39034648 -46661106 - AluSg SINE Alu -150 160 1 1750 159 37 3 chr15 39035542 39035838 -46659916 - AluJb SINE Alu -6 306 1 1595 163 12 66 chr15 39036392 39036711 -46659043 - AluJo SINE Alu -10 302 1 982 188 133 9 chr15 39036864 39037082 -46658672 - AluJo SINE Alu -21 291 47 323 226 145 54 chr15 39037957 39038136 -46657618 - MIR SINE MIR 0 262 64 2279 102 0 0 chr15 39038136 39038431 -46657323 + AluY SINE Alu 3 297 -14 281 292 155 19 chr15 39038670 39038831 -46656923 + MIR SINE MIR 49 231 -31 259 336 111 63 chr15 39039352 39039685 -46656069 + L2 LINE L2 2872 3220 -52 199 302 0 0 chr15 39039922 39039965 -46655789 - MIR SINE MIR -105 103 61 1521 180 20 16 chr15 39040689 39040994 -46654760 + AluJb SINE Alu 1 306 -6 2344 88 3 7 chr15 39043412 39043720 -46652034 + AluSq SINE Alu 1 307 -6 184 226 0 0 chr15 39043721 39043752 -46652002 - L2 LINE L2 -32 3240 3210 184 200 0 0 chr15 39043727 39043757 -46651997 - MIR SINE MIR -32 230 201 1915 143 33 27 chr15 39044419 39044754 -46651000 + MER2 DNA MER2_type 1 337 -8 367 100 0 0 chr15 39044754 39044804 -46650950 - AluJ/FLAM SINE Alu -229 73 24 1667 154 27 27 chr15 39044855 39045148 -46650606 - AluJo SINE Alu -19 293 1 2290 98 0 0 chr15 39045667 39045962 -46649792 + AluSq SINE Alu 1 295 -18 474 248 177 30 chr15 39045993 39046191 -46649563 + MIR SINE MIR 36 262 0 368 253 55 0 chr15 39046492 39046583 -46649171 + MIR SINE MIR 89 184 -78 465 274 44 0 chr15 39047460 39047595 -46648159 + L1MB5 LINE L1 6001 6141 -33 21 82 0 0 chr15 39048048 39048097 -46647657 + AT_rich Low_complexity Low_complexity 1 49 0 819 132 0 0 chr15 39048182 39048296 -46647458 + AluSq/x SINE Alu 1 114 -198 2184 114 13 0 chr15 39048836 39049134 -46646620 - AluSx SINE Alu -10 302 1 294 301 150 9 chr15 39049160 39049273 -46646481 - L3 LINE CR1 -2 1575 1447 1642 204 10 3 chr15 39049300 39049608 -46646146 - AluJo SINE Alu -2 310 1 511 266 16 33 chr15 39049768 39049952 -46645802 - L3 LINE CR1 -685 892 712 292 300 117 8 chr15 39050029 39050149 -46645605 - L3 LINE CR1 -1097 480 348 7684 199 46 47 chr15 39050528 39051701 -46644053 - L1MB5 LINE L1 0 6174 5002 1706 175 7 7 chr15 39051701 39051987 -46643767 + AluJo SINE Alu 1 286 -26 7684 199 46 47 chr15 39051987 39052834 -46642920 - L1MB5 LINE L1 -1172 5002 4156 2163 111 0 26 chr15 39052834 39053140 -46642614 - AluSg SINE Alu -12 298 1 7684 199 46 47 chr15 39053140 39053156 -46642598 - L1MB5 LINE L1 -2018 4156 4141 1446 121 31 0 chr15 39053156 39053379 -46642375 - MER30 DNA MER1_type 0 230 1 7684 199 46 47 chr15 39053379 39053600 -46642154 - L1MB5 LINE L1 -2033 4141 3921 1819 158 21 0 chr15 39053600 39053891 -46641863 - AluSx SINE Alu -15 297 1 7684 199 46 47 chr15 39053891 39054277 -46641477 - L1MB5 LINE L1 -2253 3921 3536 1704 189 7 0 chr15 39054277 39054573 -46641181 - AluJb SINE Alu -14 298 1 7684 199 46 47 chr15 39054573 39054882 -46640872 - L1MB5 LINE L1 -2638 3536 3223 1651 181 20 3 chr15 39054882 39055175 -46640579 - AluJb SINE Alu -4 308 11 7684 199 46 47 chr15 39055175 39055463 -46640291 - L1MB5 LINE L1 -2951 3223 2936 22 0 0 0 chr15 39055706 39055728 -46640026 + AT_rich Low_complexity Low_complexity 1 22 0 650 189 24 65 chr15 39056463 39056632 -46639122 + MER58A DNA MER1_type 45 206 -18 260 313 239 17 chr15 39056903 39057079 -46638675 + MIR SINE MIR 20 234 -28 375 215 47 9 chr15 39057543 39057650 -46638104 + L1MC4 LINE L1 7932 8042 0 21 36 0 0 chr15 39058467 39058495 -46637259 + AT_rich Low_complexity Low_complexity 1 28 0 593 225 62 0 chr15 39059402 39059531 -46636223 + FLAM_A SINE Alu 2 138 -4 2592 55 0 0 chr15 39059676 39059983 -46635771 + AluY SINE Alu 1 307 -4 1753 109 3 136 chr15 39061252 39061582 -46634172 - AluSg SINE Alu -22 288 3 309 209 12 23 chr15 39062488 39062574 -46633180 - L1MC5 LINE L1 -45 7916 7832 1117 158 62 10 chr15 39062864 39063107 -46632647 + AluJb SINE Alu 86 312 0 270 0 0 0 chr15 39063151 39063181 -46632573 + (TC)n Simple_repeat Simple_repeat 2 31 0 2152 125 0 3 chr15 39063221 39063524 -46632230 + AluSq SINE Alu 3 304 -9 217 218 0 55 chr15 39063680 39063735 -46632019 - L2 LINE L2 -8 3264 3213 383 304 0 0 chr15 39064125 39064217 -46631537 + MIR SINE MIR 66 157 -105 215 371 10 10 chr15 39064443 39064540 -46631214 + L2 LINE L2 1188 1284 -2030 1008 167 6 0 chr15 39064578 39064734 -46631020 - FRAM SINE Alu -16 160 4 375 341 37 47 chr15 39064734 39065030 -46630724 - L3 LINE CR1 -33 1544 1252 248 278 62 72 chr15 39065087 39065184 -46630570 - L3 LINE CR1 -517 1060 965 1296 171 8 61 chr15 39065419 39065683 -46630071 - AluJo SINE Alu -19 293 44 417 214 16 40 chr15 39065684 39065810 -46629944 - L1M4 LINE L1 -866 5280 5158 287 134 0 104 chr15 39065814 39065881 -46629873 - FLAM SINE Alu -16 117 75 1799 259 71 8 chr15 39065925 39066569 -46629185 - L1M4 LINE L1 -1666 4480 3796 518 282 5 35 chr15 39066572 39066782 -46628972 - L1M4 LINE L1 -2481 3665 3465 325 73 0 0 chr15 39066784 39066825 -46628929 + Alu SINE Alu 1 41 -258 224 171 0 0 chr15 39066968 39067003 -46628751 - MIR SINE MIR -137 71 37 504 116 186 0 chr15 39067013 39067099 -46628655 + AluJb SINE Alu 195 296 -16 232 295 246 6 chr15 39067202 39067378 -46628376 + MIR SINE MIR 38 254 -8 255 158 237 26 chr15 39067714 39067790 -46627964 - Charlie1 DNA MER1_type 0 2761 2670 24 0 0 0 chr15 39067801 39067825 -46627929 + AT_rich Low_complexity Low_complexity 1 24 0 228 286 26 13 chr15 39067906 39067983 -46627771 - MIR3 SINE MIR -119 89 12 183 296 0 19 chr15 39067978 39068032 -46627722 - L2 LINE L2 -10 3262 3210 * 2172 94 0 11 chr15 39068304 39068613 -46627141 - AluSx SINE Alu 0 306 1 461 203 42 157 chr15 39069090 39069210 -46626544 + MER63A DNA MER1_type 2 83 -1605 646 256 0 0 chr15 39069210 39069343 -46626411 - FLAM_A SINE Alu 0 133 1 461 203 42 157 chr15 39069343 39069458 -46626296 + MER63A DNA MER1_type 83 210 0 218 152 0 22 chr15 39069750 39069796 -46625958 + CT-rich Low_complexity Low_complexity 1 45 0 1880 177 7 0 chr15 39069796 39070095 -46625659 - AluJo SINE Alu -11 301 1 1094 175 57 0 chr15 39071157 39071351 -46624403 + AluJo SINE Alu 1 205 -107 2244 101 0 0 chr15 39071538 39071834 -46623920 + AluY SINE Alu 1 296 -15 269 256 184 56 chr15 39072078 39072206 -46623548 - L1ME LINE L1 -301 5820 5710 294 73 0 0 chr15 39072206 39072247 -46623507 + (CA)n Simple_repeat Simple_repeat 2 42 0 269 256 184 56 chr15 39072247 39072384 -46623370 - L1ME LINE L1 -411 5710 5521 2160 121 3 0 chr15 39072397 39072702 -46623052 + AluSx SINE Alu 5 310 -2 2823 77 11 11 chr15 39072724 39073099 -46622655 + THE1C LTR MaLR 1 375 0 1076 173 10 43 chr15 39073255 39073463 -46622291 + LTR48B LTR ERV1 3 203 -441 1535 197 14 24 chr15 39073659 39073949 -46621805 - AluJo SINE Alu -18 294 8 2248 107 0 0 chr15 39074178 39074476 -46621278 - AluSg SINE Alu -8 302 5 869 198 63 38 chr15 39075537 39075774 -46619980 - Charlie4 DNA MER1_type -1716 245 3 1803 162 26 16 chr15 39076384 39076693 -46619061 + AluJo SINE Alu 1 312 0 2555 92 31 3 chr15 39076872 39077232 -46618522 + THE1C LTR MaLR 1 370 -5 1795 157 37 3 chr15 39078895 39079189 -46616565 + AluJb SINE Alu 1 304 -8 2165 125 0 10 chr15 39079511 39079823 -46615931 + AluSx SINE Alu 1 309 -3 369 255 43 106 chr15 39080928 39081089 -46614665 + MIR3 SINE MIR 25 175 -33 1436 155 68 22 chr15 39081583 39081861 -46613893 - AluJo SINE Alu -11 291 1 222 156 0 0 chr15 39082144 39082189 -46613565 + GA-rich Low_complexity Low_complexity 4 48 0 692 264 145 4 chr15 39082228 39082455 -46613299 + MIR SINE MIR 4 262 0 1598 247 129 57 chr15 39083258 39083348 -46612406 - L1MCc LINE L1 -4146 2976 2894 1378 168 118 11 chr15 39083348 39083628 -46612126 - AluJo SINE Alu -2 310 1 1598 247 129 57 chr15 39083628 39083925 -46611829 - L1MCc LINE L1 -4228 2894 2620 1168 193 52 0 chr15 39083925 39084138 -46611616 + MER58A DNA MER1_type 1 224 0 1598 247 129 57 chr15 39084138 39085547 -46610207 - L1MCc LINE L1 -4502 2620 853 2159 94 7 27 chr15 39085590 39085888 -46609866 - AluSc SINE Alu -17 292 1 1946 221 82 126 chr15 39085939 39086092 -46609662 - L1MEc LINE L1 -5231 1165 1007 1493 197 17 20 chr15 39086092 39086392 -46609362 + AluJo SINE Alu 1 299 -13 1946 221 82 126 chr15 39086392 39086425 -46609329 - L1MEc LINE L1 -5389 1007 974 624 27 0 0 chr15 39086425 39086499 -46609255 + (GGAA)n Simple_repeat Simple_repeat 1 74 0 1946 221 82 126 chr15 39086499 39087394 -46608360 - L1MEc LINE L1 -5422 974 130 1523 169 43 22 chr15 39088495 39088773 -46606981 - AluJb SINE Alu -28 284 1 640 169 153 0 chr15 39088946 39089070 -46606684 - AluJo SINE Alu -16 296 154 270 233 50 0 chr15 39089082 39089142 -46606612 + L2 LINE L2 3021 3083 -230 180 0 0 0 chr15 39089146 39089166 -46606588 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 401 80 0 0 chr15 39089200 39089250 -46606504 + AluJ/FLAM SINE Alu 12 61 -251 443 152 0 0 chr15 39089352 39089418 -46606336 - AluSq/x SINE Alu -203 109 44 287 241 153 53 chr15 39089419 39089589 -46606165 - L1ME LINE L1 -294 5827 5641 308 203 14 54 chr15 39089713 39089787 -46605967 - AluJo SINE Alu -128 174 104 2215 120 0 0 chr15 39090569 39090868 -46604886 - AluSx SINE Alu -13 299 1 303 274 20 20 chr15 39091143 39091245 -46604509 + MER58 DNA MER1_type 2318 2419 -1 218 286 36 0 chr15 39091553 39091609 -46604145 + (CGTG)n Simple_repeat Simple_repeat 2 59 0 1743 171 9 22 chr15 39091674 39091989 -46603765 + AluJo SINE Alu 1 311 -1 23 0 0 0 chr15 39092331 39092354 -46603400 + AT_rich Low_complexity Low_complexity 1 23 0 769 180 0 0 chr15 39092632 39092760 -46602994 + FLAM_C SINE Alu 12 139 -4 47 53 0 0 chr15 39093678 39093753 -46602001 + AT_rich Low_complexity Low_complexity 1 75 0 548 277 14 7 chr15 39094324 39094472 -46601282 + MLT1K LTR MaLR 434 582 -6 1999 122 0 80 chr15 39094971 39095308 -46600446 - AluSx SINE Alu -2 310 1 1634 156 52 3 chr15 39095630 39095918 -46599836 - AluJb SINE Alu -4 308 7 1688 143 85 37 chr15 39096389 39096717 -46599037 - MER2 DNA MER2_type 0 344 1 408 340 0 21 chr15 39097135 39097276 -46598478 + MIR3 SINE MIR 5 142 -66 1334 184 121 18 chr15 39098994 39099266 -46596488 + AluJo SINE Alu 1 300 -12 307 154 0 0 chr15 39101802 39101854 -46593900 + Alu SINE Alu 246 297 -4 292 333 183 0 chr15 39103717 39103870 -46591884 + MER5A DNA MER1_type 9 189 0 334 309 35 82 chr15 39104271 39104483 -46591271 - MIR SINE MIR -44 164 2 1645 203 0 10 chr15 39104836 39105141 -46590613 + AluJb SINE Alu 2 303 -9 341 191 0 3 chr15 39105658 39105732 -46590022 + MER34C LTR ERV1 1 101 -469 371 254 52 10 chr15 39105933 39106099 -46589655 + MER34B LTR ERV1 337 492 -73 610 201 141 37 chr15 39106338 39106584 -46589170 - L1MC4 LINE L1 -116 7879 7660 1200 132 44 18 chr15 39106584 39106812 -46588942 - L1MA3 LINE L1 -14 6291 6058 610 201 141 37 chr15 39106812 39107315 -46588439 - L1MC4 LINE L1 -335 7660 6871 641 256 85 16 chr15 39107316 39107401 -46588353 - L1MD3 LINE L1 -1294 6701 6623 279 0 0 0 chr15 39107401 39107432 -46588322 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 641 256 85 16 chr15 39107432 39107592 -46588162 - L1MD3 LINE L1 -1372 6623 6439 2173 99 3 0 chr15 39108090 39108372 -46587382 + AluSp SINE Alu 3 285 -28 389 346 160 19 chr15 39108460 39108836 -46586918 + L3 LINE CR1 1063 1491 -86 283 310 150 9 chr15 39108890 39109103 -46586651 + MIR SINE MIR 6 248 -14 398 308 9 0 chr15 39109178 39109285 -46586469 + L2 LINE L2 3201 3308 -5 2211 144 20 38 chr15 39109351 39109748 -46586006 - L1MB2 LINE L1 -210 5961 5572 265 260 29 39 chr15 39109801 39109905 -46585849 + L1ME4a LINE L1 5984 6086 -35 2260 109 0 7 chr15 39111686 39111990 -46583764 - AluSg SINE Alu -8 302 1 2328 74 0 10 chr15 39112455 39112751 -46583003 + AluY SINE Alu 1 293 -18 983 234 102 0 chr15 39112796 39113052 -46582702 + AluJb SINE Alu 13 294 -18 861 208 6 0 chr15 39117570 39117729 -46578025 - FRAM SINE Alu -6 160 1 189 388 39 0 chr15 39117863 39117966 -46577788 + MIR SINE MIR 38 144 -64 593 297 59 42 chr15 39118744 39118980 -46576774 + MIR SINE MIR 1 240 -22 24 0 0 0 chr15 39118993 39119017 -46576737 + AT_rich Low_complexity Low_complexity 1 24 0 264 283 26 97 chr15 39119848 39119961 -46575793 + MIR SINE MIR 45 149 -59 220 350 49 28 chr15 39119975 39120118 -46575636 - MIR SINE MIR -6 256 111 4093 155 51 25 chr15 39120119 39120178 -46575576 + L1MB7 LINE L1 5346 5402 -782 1603 173 36 7 chr15 39120178 39120455 -46575299 - AluJb SINE Alu -27 285 1 4093 155 51 25 chr15 39120455 39121212 -46574542 + L1MB7 LINE L1 5402 6184 0 208 372 0 0 chr15 39122345 39122423 -46573331 + L2 LINE L2 3236 3313 0 2049 142 3 10 chr15 39122450 39122761 -46572993 + AluSx SINE Alu 1 309 -3 1678 172 7 40 chr15 39123606 39123908 -46571846 - AluSx SINE Alu -18 294 3 2221 80 30 13 chr15 39124887 39125186 -46570568 + AluY SINE Alu 1 304 -7 270 288 126 35 chr15 39125693 39125746 -46570008 + MER113 DNA MER1_type? 262 309 -212 1246 174 119 82 chr15 39125746 39125876 -46569878 + AluJb SINE Alu 3 127 -185 2206 61 3 61 chr15 39125876 39126189 -46569565 - AluY SINE Alu -16 295 1 1246 174 119 82 chr15 39126189 39126351 -46569403 + AluJb SINE Alu 127 306 -6 270 288 126 35 chr15 39126351 39126495 -46569259 + MER113 DNA MER1_type? 309 477 -44 310 300 163 56 chr15 39127230 39127463 -46568291 + MIR SINE MIR 3 260 -2 646 269 54 88 chr15 39128049 39128492 -46567262 - MLT1A1 LTR MaLR 0 365 1 802 218 13 0 chr15 39128853 39129009 -46566745 - AluJb SINE Alu -3 309 152 186 394 11 43 chr15 39129233 39129327 -46566427 - L2 LINE L2 -67 3205 3115 320 341 118 53 chr15 39129412 39129658 -46566096 - L2 LINE L2 -9 3263 3002 212 405 17 9 chr15 39129637 39129753 -46566001 + L2 LINE L2 3151 3267 -5 * 1477 180 6 68 chr15 39130408 39130552 -46565202 + AluSx SINE Alu 3 118 -194 261 75 0 0 chr15 39130552 39130592 -46565162 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 1477 180 6 68 chr15 39130592 39130769 -46564985 + AluSx SINE Alu 118 304 -8 342 284 65 32 chr15 39132172 39132327 -46563427 - MIR SINE MIR -20 242 83 747 190 87 49 chr15 39132526 39132710 -46563044 + AluJo SINE Alu 1 191 -121 1707 153 33 4 chr15 39133213 39133511 -46562243 + AluJb SINE Alu 2 307 0 425 324 97 5 chr15 39133644 39133860 -46561894 + MIR SINE MIR 2 237 -25 21 0 0 0 chr15 39134160 39134181 -46561573 + AT_rich Low_complexity Low_complexity 1 21 0 226 293 13 53 chr15 39134979 39135054 -46560700 - L2 LINE L2 0 3272 3201 1584 192 0 24 chr15 39135265 39135556 -46560198 + AluJo SINE Alu 5 288 -24 1611 165 0 54 chr15 39135886 39136202 -46559552 - AluJo SINE Alu -13 299 1 183 184 0 0 chr15 39136297 39136335 -46559419 + A-rich Low_complexity Low_complexity 1 38 0 257 338 46 53 chr15 39136348 39136499 -46559255 - L2 LINE L2 -7 3265 3116 263 271 0 43 chr15 39137089 39137159 -46558595 + L2 LINE L2 3186 3252 -20 1890 176 0 3 chr15 39137966 39138278 -46557476 + AluJb SINE Alu 1 311 -1 1502 168 9 75 chr15 39141934 39142255 -46553499 - AluJo SINE Alu -12 300 1 4793 163 35 28 chr15 39142256 39143248 -46552506 - L1MC1 LINE L1 -155 6178 5186 1382 159 31 0 chr15 39143427 39143685 -46552069 - L1MD3 LINE L1 0 7995 7730 312 256 112 24 chr15 39143718 39143843 -46551911 - L1MC4a LINE L1 -1910 5898 5763 227 292 180 0 chr15 39144017 39144106 -46551648 - MIR SINE MIR -74 188 84 1904 138 10 14 chr15 39144147 39144436 -46551318 + AluSx SINE Alu 1 288 -24 2096 128 3 16 chr15 39144685 39144998 -46550756 + AluSx SINE Alu 1 309 -3 2054 134 20 0 chr15 39145124 39145430 -46550324 + AluSx SINE Alu 1 312 0 216 0 0 0 chr15 39195872 39195896 -46499858 + (A)n Simple_repeat Simple_repeat 1 24 0 302 291 113 48 chr15 39196957 39197187 -46498567 + MLT1L LTR MaLR 161 405 -210 491 283 83 45 chr15 39197336 39197574 -46498180 + MIR SINE MIR 17 259 -3 23 0 0 0 chr15 39197666 39197689 -46498065 + AT_rich Low_complexity Low_complexity 1 23 0 1514 23 0 0 chr15 39198018 39198194 -46497560 + L1PA5 LINE L1 5978 6153 -1 309 26 0 0 chr15 39198264 39198302 -46497452 + (CA)n Simple_repeat Simple_repeat 1 38 0 2394 158 11 21 chr15 39198540 39199008 -46496746 - L1MB8 LINE L1 0 6178 5716 222 116 0 0 chr15 39200359 39200402 -46495352 + (TTTTTG)n Simple_repeat Simple_repeat 1 43 0 1989 133 48 0 chr15 39200406 39200699 -46495055 - AluSx SINE Alu -5 307 1 819 158 0 8 chr15 39200753 39200886 -46494868 - FLAM_A SINE Alu -1 132 1 363 183 48 0 chr15 39201900 39202026 -46493728 + (TA)n Simple_repeat Simple_repeat 2 133 0 1961 152 5 76 chr15 39202198 39202246 -46493508 + L1MB3 LINE L1 5782 5832 -351 2540 39 0 7 chr15 39202246 39202553 -46493201 + AluY SINE Alu 1 305 -6 1961 152 5 76 chr15 39202553 39202924 -46492830 + L1MB3 LINE L1 5832 6171 -12 1116 143 0 0 chr15 39202973 39203134 -46492620 + FRAM SINE Alu 1 159 -17 930 268 113 35 chr15 39203271 39203757 -46491997 + HAL1b LINE L1 61 584 -764 454 216 68 27 chr15 39203823 39203971 -46491783 + L1MC/D LINE L1 5282 5435 -2373 268 152 22 0 chr15 39203971 39204017 -46491737 + Alu SINE Alu 1 47 -254 21 0 0 0 chr15 39204122 39204143 -46491611 + AT_rich Low_complexity Low_complexity 1 21 0 2230 108 3 0 chr15 39204191 39204488 -46491266 - AluSx SINE Alu -12 300 3 21 36 0 0 chr15 39207171 39207199 -46488555 + AT_rich Low_complexity Low_complexity 1 28 0 555 371 37 48 chr15 39207246 39207266 -46488488 - L2 LINE L2 -2 3270 3251 1411 171 93 25 chr15 39207266 39207588 -46488166 - MER2 DNA MER2_type 0 344 1 555 371 37 48 chr15 39207588 39208125 -46487629 - L2 LINE L2 -21 3251 2713 965 296 181 18 chr15 39208224 39208727 -46487027 - MLT1K LTR MaLR -2 586 2 280 294 0 81 chr15 39208764 39208900 -46486854 + L3 LINE CR1 1187 1311 -266 30 45 0 0 chr15 39209008 39209052 -46486702 + AT_rich Low_complexity Low_complexity 1 44 0 374 263 34 17 chr15 39209087 39209205 -46486549 - MIR SINE MIR -58 204 85 23 0 0 0 chr15 39209365 39209388 -46486366 + AT_rich Low_complexity Low_complexity 1 23 0 7538 31 0 9 chr15 39209388 39210358 -46485396 - L1PA4 LINE L1 -3 6152 5185 832 229 93 0 chr15 39211259 39211464 -46484290 + MER58A DNA MER1_type 1 224 0 2030 74 4 4 chr15 39213224 39213494 -46482260 + L1PA6 LINE L1 5880 6149 -5 1010 227 37 41 chr15 39213589 39213884 -46481870 + MER65-int LTR ERV1 379 672 -4199 3550 169 33 0 chr15 39214007 39215702 -46480052 + L1PBa LINE L1 105 2021 -4842 1858 161 30 3 chr15 39216925 39217229 -46478525 - AluJo SINE Alu 0 312 1 223 300 14 0 chr15 39217357 39217427 -46478327 + (TA)n Simple_repeat Simple_repeat 2 72 0 2290 93 0 10 chr15 39217927 39218229 -46477525 - AluSg SINE Alu -11 299 1 531 79 0 0 chr15 39218480 39218556 -46477198 - HY3 scRNA scRNA -1 100 25 942 131 15 45 chr15 39218738 39218885 -46476869 + MER65A LTR ERV1 253 394 -51 2422 63 3 13 chr15 39218885 39219186 -46476568 - AluY SINE Alu -13 298 1 942 131 15 45 chr15 39219186 39219237 -46476517 + MER65A LTR ERV1 394 445 0 2263 238 71 65 chr15 39219237 39220015 -46475739 - L1 LINE L1 -3844 2366 1594 1931 139 3 14 chr15 39220015 39220309 -46475445 - AluSx SINE Alu -17 295 5 2263 238 71 65 chr15 39220309 39220667 -46475087 - L1 LINE L1 -4616 1594 1240 1490 193 34 34 chr15 39220667 39220963 -46474791 - AluJb SINE Alu -16 296 1 2263 238 71 65 chr15 39220963 39221127 -46474627 - L1 LINE L1 -4970 1240 1079 317 151 0 0 chr15 39221127 39221180 -46474574 + MER87 LTR ERV1 91 143 -398 2263 238 71 65 chr15 39221180 39222207 -46473547 - L1 LINE L1 -5131 1079 4 832 180 31 36 chr15 39222234 39222456 -46473298 - L1M3 LINE L1 -385 5786 5566 1808 224 82 48 chr15 39222607 39223274 -46472480 + LTR8 LTR ERV1 16 691 0 1413 161 30 13 chr15 39223274 39223724 -46472030 - L1M3 LINE L1 -628 5555 5099 340 253 0 0 chr15 39223731 39223814 -46471940 + L1M4 LINE L1 4851 4933 -1213 407 223 58 0 chr15 39223954 39224057 -46471697 + L1M1 LINE L1 21 129 -7436 13125 173 157 17 chr15 39224061 39225271 -46470483 + L1M1 LINE L1 12 1051 -6514 2328 139 111 5 chr15 39225271 39225658 -46470096 - MSTA LTR MaLR 0 428 1 13125 173 157 17 chr15 39225658 39228877 -46466877 + L1M1 LINE L1 1051 5074 -2491 12509 208 19 6 chr15 39229036 39232703 -46463051 + L1PB1 LINE L1 1342 5035 -1111 2116 44 0 4 chr15 39232706 39232981 -46462773 - L1PA4 LINE L1 -48 6107 5834 3433 123 20 5 chr15 39232996 39233699 -46462055 + L1PB1 LINE L1 5078 5791 -360 492 165 0 0 chr15 39233753 39233844 -46461910 + L1PB1 LINE L1 5782 5872 -279 624 13 0 0 chr15 39233844 39233923 -46461831 - L1PA2 LINE L1 0 6155 6077 21 0 0 0 chr15 39234101 39234122 -46461632 + AT_rich Low_complexity Low_complexity 1 21 0 693 228 0 0 chr15 39234123 39234259 -46461495 - FAM SINE Alu -19 166 31 377 225 196 8 chr15 39234261 39234527 -46461227 - L1MEc LINE L1 -4619 1637 1263 2956 231 109 21 chr15 39234536 39234772 -46460982 - L1MEc LINE L1 -5169 1227 1013 1724 169 0 53 chr15 39234772 39235092 -46460662 - AluJb SINE Alu -9 303 1 2956 231 109 21 chr15 39235092 39235951 -46459803 - L1MEc LINE L1 -5383 1013 36 301 256 67 11 chr15 39236129 39236219 -46459535 + MLT1I LTR MaLR 313 407 -2 426 200 33 0 chr15 39237476 39237566 -46458188 + MER99 DNA DNA 2 94 -734 21 0 0 0 chr15 39237955 39237976 -46457778 + AT_rich Low_complexity Low_complexity 1 21 0 2860 193 22 3 chr15 39238199 39238786 -46456968 + MER99 DNA DNA 230 827 -1 2271 68 17 3 chr15 39238822 39239116 -46456638 + AluY SINE Alu 3 300 -11 2156 111 0 36 chr15 39239332 39239638 -46456116 + AluSx SINE Alu 1 295 -17 530 310 77 17 chr15 39239890 39240190 -46455564 - MLT1I LTR MaLR 0 409 92 23 0 0 0 chr15 39240233 39240256 -46455498 + AT_rich Low_complexity Low_complexity 1 23 0 2436 94 0 3 chr15 39240441 39240748 -46455006 + AluSq SINE Alu 1 306 -7 1839 131 28 3 chr15 39240748 39241031 -46454723 + AluSx SINE Alu 1 290 -22 658 204 74 0 chr15 39241220 39241382 -46454372 - MER58A DNA MER1_type -8 216 43 2234 102 10 3 chr15 39241447 39241741 -46454013 + AluSq SINE Alu 1 296 -17 2250 101 3 3 chr15 39241790 39242086 -46453668 + AluSp SINE Alu 1 296 -17 22 0 0 0 chr15 39242405 39242427 -46453327 + AT_rich Low_complexity Low_complexity 1 22 0 3049 132 133 16 chr15 39242679 39243147 -46452607 - Tigger3(Golem) DNA MER2_type -1 3027 2456 1747 174 0 17 chr15 39243147 39243435 -46452319 - AluJb SINE Alu -29 283 1 3049 132 133 16 chr15 39243435 39243635 -46452119 - Tigger3(Golem) DNA MER2_type -572 2456 2281 489 151 161 0 chr15 39243632 39243725 -46452029 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 263 276 32 32 chr15 39243987 39244110 -46451644 + L3 LINE CR1 1295 1417 -160 1754 171 44 83 chr15 39245321 39245755 -46449999 + MSTB1 LTR MaLR 1 417 -15 14384 122 20 35 chr15 39245856 39247151 -46448603 - Tigger1 DNA MER2_type 0 2418 1176 1831 149 0 28 chr15 39247151 39247440 -46448314 - AluSx SINE Alu -30 282 2 14384 122 20 35 chr15 39247440 39248598 -46447156 - Tigger1 DNA MER2_type -1242 1176 2 558 147 112 130 chr15 39248643 39248717 -46447037 + L1MB5 LINE L1 5705 5779 -395 5919 23 0 0 chr15 39248717 39249400 -46446354 + L1PA3 LINE L1 5461 6143 -12 558 147 112 130 chr15 39249400 39249724 -46446030 + L1MB5 LINE L1 5779 6174 0 2562 164 10 2 chr15 39249969 39250383 -46445371 - MER47B DNA MER2_type -1 417 1 204 299 46 46 chr15 39250792 39250879 -46444875 + MIR SINE MIR 110 196 -66 8111 102 99 30 chr15 39251766 39253043 -46442711 - SVA Other Other -20 1366 2 234 91 0 0 chr15 39253058 39253091 -46442663 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 259 268 98 41 chr15 39254024 39254147 -46441607 - MIR SINE MIR -71 191 62 239 394 86 27 chr15 39255536 39255818 -46439936 - L2 LINE L2 0 3272 2957 1788 178 0 32 chr15 39255818 39256133 -46439621 - AluJb SINE Alu -7 305 1 239 394 86 27 chr15 39256133 39256256 -46439498 - L2 LINE L2 -315 2957 2843 4955 111 83 9 chr15 39257217 39258094 -46437660 - Tigger3b DNA MER2_type 0 1231 290 7625 19 1 1 chr15 39258195 39259742 -46436012 - L1PA3 LINE L1 -151 6004 4458 2133 74 0 7 chr15 39259747 39260043 -46435711 + L1PB1 LINE L1 5858 6151 0 386 234 8 68 chr15 39260071 39260096 -46435658 + MER65B-int LTR ERV1 702 727 -4295 283 254 18 88 chr15 39260096 39260210 -46435544 + LTR57-int LTR ERVL 302 407 -4936 386 234 8 68 chr15 39260210 39260240 -46435514 + MER65B-int LTR ERV1 727 967 -4055 6396 214 67 66 chr15 39260267 39262311 -46433443 + MER65B-int LTR ERV1 867 2908 -1963 2249 71 0 0 chr15 39262311 39262626 -46433128 + AluY SINE Alu 1 315 0 6396 214 67 66 chr15 39262626 39262738 -46433016 + MER65B-int LTR ERV1 2908 3018 -1853 316 153 0 0 chr15 39262738 39262797 -46432957 + L1MA2 LINE L1 6242 6300 -4 6396 214 67 66 chr15 39262797 39262996 -46432758 + MER65B-int LTR ERV1 3018 3215 -1656 2105 112 0 26 chr15 39262996 39263308 -46432446 + AluSp SINE Alu 1 304 -9 6396 214 67 66 chr15 39263308 39266484 -46429270 + MER65B-int LTR ERV1 3215 4869 -2 1716 190 3 7 chr15 39266484 39266774 -46428980 + AluJo SINE Alu 3 291 -21 282 143 0 0 chr15 39266800 39266849 -46428905 + MER65B LTR ERV1 5 53 -478 1637 101 13 8 chr15 39266853 39267090 -46428664 + AluSq SINE Alu 5 242 -71 32 0 0 0 chr15 39268216 39268248 -46427506 + AT_rich Low_complexity Low_complexity 1 32 0 271 274 265 20 chr15 39268678 39268882 -46426872 - MIR SINE MIR -2 260 7 355 300 61 76 chr15 39268909 39269172 -46426582 + HAL1 LINE L1 16 274 -2233 2179 117 7 0 chr15 39269332 39269630 -46426124 - AluSx SINE Alu -12 300 1 949 128 0 0 chr15 39269633 39269766 -46425988 - AluSq/x SINE Alu -179 133 1 354 389 75 13 chr15 39269766 39270005 -46425749 + HAL1 LINE L1 443 696 -1811 1697 164 3 39 chr15 39270016 39270327 -46425427 - AluJo SINE Alu -12 300 1 2475 198 116 21 chr15 39270556 39271626 -46424128 + Charlie1 DNA MER1_type 1444 2668 -93 263 297 0 0 chr15 39271649 39271713 -46424041 - MER91B DNA MER1_type -126 64 1 1593 267 106 72 chr15 39271714 39273009 -46422745 + HAL1 LINE L1 775 2113 -394 328 130 0 0 chr15 39273048 39273094 -46422660 - MER96B DNA MER1_type? -182 235 190 719 182 8 0 chr15 39273137 39273269 -46422485 - FLAM_C SINE Alu 0 133 1 371 282 66 17 chr15 39274642 39274823 -46420931 + L1MEc LINE L1 1748 1937 -4459 * 505 231 48 82 chr15 39274816 39275084 -46420670 + L1MEc LINE L1 3328 3586 -2629 21 36 0 0 chr15 39276422 39276450 -46419304 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr15 39277855 39277877 -46417877 + AT_rich Low_complexity Low_complexity 1 22 0 2353 87 0 3 chr15 39278393 39278693 -46417061 - AluSq SINE Alu -14 299 1 1638 187 99 59 chr15 39279002 39279495 -46416259 + Looper DNA T2_type 3 515 -1043 753 271 75 59 chr15 39279496 39279880 -46415874 - MER34 LTR ERV1 0 542 147 2121 99 38 0 chr15 39279880 39280173 -46415581 + AluSq SINE Alu 1 304 -9 753 271 75 59 chr15 39280173 39280297 -46415457 - MER34 LTR ERV1 -395 147 26 4059 167 40 36 chr15 39280307 39280727 -46415027 + Looper DNA T2_type 513 930 -628 1867 123 42 7 chr15 39280727 39281012 -46414742 - AluJo SINE Alu -17 295 1 4059 167 40 36 chr15 39281012 39281377 -46414377 + Looper DNA T2_type 930 1305 -253 2165 124 42 17 chr15 39281377 39281733 -46414021 + MER47A DNA MER2_type 1 365 -1 4059 167 40 36 chr15 39281733 39281816 -46413938 + Looper DNA T2_type 1305 1386 -172 601 182 67 24 chr15 39282666 39282831 -46412923 + Looper DNA T2_type 1387 1558 0 395 208 0 14 chr15 39283161 39283233 -46412521 - Tigger3b DNA MER2_type -1160 71 1 258 239 83 94 chr15 39285477 39285526 -46410228 + MLT1L LTR MaLR 3 51 -460 1056 229 47 0 chr15 39285526 39285740 -46410014 + MER58A DNA MER1_type 1 224 0 258 239 83 94 chr15 39285740 39285958 -46409796 + MLT1L LTR MaLR 51 264 -247 21 0 0 0 chr15 39287682 39287703 -46408051 + AT_rich Low_complexity Low_complexity 1 21 0 708 144 19 3 chr15 39287801 39287973 -46407781 + MLT1E3 LTR MaLR 5 230 -424 1587 207 12 18 chr15 39288001 39288339 -46407415 + MLT1E3 LTR MaLR 289 624 0 428 275 100 10 chr15 39288841 39289041 -46406713 + LTR33 LTR ERVL 304 521 0 285 356 110 7 chr15 39289083 39289229 -46406525 + MIR3 SINE MIR 37 197 -11 921 184 134 20 chr15 39289633 39289834 -46405920 - MER58A DNA MER1_type 0 224 1 393 305 72 18 chr15 39290647 39290870 -46404884 + MARNA DNA Mariner 186 420 -166 23 0 0 0 chr15 39291368 39291391 -46404363 + AT_rich Low_complexity Low_complexity 1 23 0 203 175 0 0 chr15 39293203 39293243 -46402511 + (TA)n Simple_repeat Simple_repeat 2 41 0 228 236 99 94 chr15 39293836 39294027 -46401727 - MLT1J LTR MaLR -112 399 208 5617 208 135 47 chr15 39294033 39295888 -46399866 - L1MCa LINE L1 -4392 2034 18 3440 210 76 40 chr15 39295883 39295978 -46399776 - L1M4 LINE L1 -745 5401 5311 * 2096 110 0 17 chr15 39295978 39296278 -46399476 - AluSx SINE Alu -15 297 3 3440 210 76 40 chr15 39296278 39297291 -46398463 - L1M4 LINE L1 -835 5311 4253 393 301 126 15 chr15 39299217 39299372 -46396382 + MIR SINE MIR 38 221 -41 2213 115 0 0 chr15 39299372 39299677 -46396077 + AluSx SINE Alu 1 305 -7 393 301 126 15 chr15 39299677 39299720 -46396034 + MIR SINE MIR 221 258 -4 207 0 0 0 chr15 39300199 39300222 -46395532 + (TA)n Simple_repeat Simple_repeat 1 23 0 300 323 49 30 chr15 39300253 39300417 -46395337 + L1ME3A LINE L1 5429 5595 -2213 1451 136 12 0 chr15 39301075 39301326 -46394428 - L1MA5A LINE L1 -3 6294 6041 510 309 144 0 chr15 39301433 39301627 -46394127 - MIR SINE MIR -11 251 30 276 231 74 37 chr15 39301696 39301804 -46393950 - L1MA10 LINE L1 0 6334 6223 931 187 7 1 chr15 39301853 39302038 -46393716 - L1ME1 LINE L1 -290 5882 5693 4510 165 38 14 chr15 39302039 39303049 -46392705 + L1MB2 LINE L1 5105 6143 -28 243 169 0 123 chr15 39303063 39303128 -46392626 + L1ME3A LINE L1 5962 6018 -152 405 307 74 52 chr15 39303786 39304017 -46391737 - MIR SINE MIR -6 256 21 197 171 0 0 chr15 39304880 39304915 -46390839 + MER5B DNA MER1_type 1 35 -143 1655 217 79 26 chr15 39304917 39305196 -46390558 + MLT2B1 LTR ERVL 1 311 -209 2401 161 37 37 chr15 39305196 39305657 -46390097 - LOR1b LTR ERV1 0 461 1 1655 217 79 26 chr15 39305657 39305797 -46389957 + MLT2B1 LTR ERVL 311 442 -78 340 302 22 17 chr15 39305817 39305996 -46389758 + (TA)n Simple_repeat Simple_repeat 1 180 0 10251 194 46 24 chr15 39306100 39309004 -46386750 - L1M2 LINE L1 -639 5673 2699 1470 168 44 24 chr15 39309104 39309401 -46386353 + MER65A LTR ERV1 48 350 -95 5175 128 13 4 chr15 39309403 39310168 -46385586 + HSMAR1 DNA Mariner 27 798 -489 276 100 0 0 chr15 39310171 39310211 -46385543 + (TTTC)n Simple_repeat Simple_repeat 3 42 0 2157 125 3 0 chr15 39310215 39310519 -46385235 - AluSq SINE Alu -8 305 1 3557 120 2 2 chr15 39310519 39311020 -46384734 + HSMAR1 DNA Mariner 785 1285 -2 444 143 12 24 chr15 39311020 39311100 -46384654 + MER65A LTR ERV1 365 443 -2 871 253 22 9 chr15 39311136 39311361 -46384393 + MER65A-int LTR ERV1 36 263 -4608 36658 99 9 12 chr15 39311374 39316842 -46378912 + L1P2 LINE L1 11 5462 -692 1665 145 10 51 chr15 39317048 39317359 -46378395 + AluJo SINE Alu 3 300 -12 207 343 133 0 chr15 39317523 39317628 -46378126 - L2 LINE L2 -15 3257 3139 293 328 105 51 chr15 39318078 39318374 -46377380 - L2 LINE L2 -701 2613 2302 1754 181 7 3 chr15 39318437 39318735 -46377019 - AluJb SINE Alu -13 299 1 315 318 132 16 chr15 39318847 39318976 -46376778 - MIR3 SINE MIR -10 198 55 208 325 128 20 chr15 39318978 39319181 -46376573 + L2 LINE L2 2514 2738 -576 1029 260 19 8 chr15 39319421 39319679 -46376075 + MIR SINE MIR 2 262 0 22 35 0 0 chr15 39320721 39320750 -46375004 + AT_rich Low_complexity Low_complexity 1 29 0 888 219 123 41 chr15 39321769 39322061 -46373693 + L2 LINE L2 2998 3313 0 234 200 0 60 chr15 39322485 39322535 -46373219 + MER2 DNA MER2_type 1 47 -298 511 246 120 24 chr15 39322602 39322769 -46372985 + MER2 DNA MER2_type 163 345 0 28 0 0 0 chr15 39323835 39323863 -46371891 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr15 39323911 39323934 -46371820 + AT_rich Low_complexity Low_complexity 1 23 0 309 250 110 0 chr15 39325658 39325758 -46369996 + MIR SINE MIR 34 144 -64 311 330 18 18 chr15 39325767 39325879 -46369875 - L2 LINE L2 -4 3268 3157 218 263 168 0 chr15 39325955 39326050 -46369704 - MIR SINE MIR -5 257 147 2059 84 7 4 chr15 39326135 39326409 -46369345 - AluSg SINE Alu -35 275 1 677 237 210 39 chr15 39327591 39327924 -46367830 - L2 LINE L2 0 3313 2924 3355 189 73 6 chr15 39328563 39329271 -46366483 + L1MB7 LINE L1 5429 6184 0 646 211 16 0 chr15 39329929 39330057 -46365697 - FLAM_A SINE Alu -3 130 1 207 0 0 0 chr15 39330081 39330104 -46365650 + (A)n Simple_repeat Simple_repeat 1 23 0 1271 155 148 55 chr15 39330275 39330585 -46365169 + MER44D DNA MER2_type 1 609 0 288 288 27 0 chr15 39330652 39330725 -46365029 + MER5A DNA MER1_type 112 186 -3 23 33 0 0 chr15 39330810 39330840 -46364914 + AT_rich Low_complexity Low_complexity 1 30 0 21 89 0 0 chr15 39331539 39331595 -46364159 + AT_rich Low_complexity Low_complexity 1 56 0 344 258 0 0 chr15 39331603 39331696 -46364058 + L1ME1 LINE L1 6070 6162 -4 211 244 0 0 chr15 39331905 39331950 -46363804 + L2 LINE L2 3269 3313 0 226 316 38 38 chr15 39332812 39332891 -46362863 - MIR SINE MIR -148 114 36 2193 88 7 23 chr15 39333449 39333754 -46362000 + AluSx SINE Alu 1 300 -12 1459 208 13 16 chr15 39333904 39334217 -46361537 + AluJb SINE Alu 1 312 0 254 227 0 0 chr15 39334571 39334637 -46361117 + L1MA6 LINE L1 6090 6155 -145 777 199 63 21 chr15 39334637 39334828 -46360926 + AluJo SINE Alu 109 307 -5 462 138 174 0 chr15 39334831 39334940 -46360814 + L1MA4A LINE L1 6170 6297 -6 251 273 41 41 chr15 39336224 39336345 -46359409 + MARNA DNA Mariner 293 413 -173 383 65 81 0 chr15 39336565 39336627 -46359127 + Alu SINE Alu 232 298 -2 29 28 0 0 chr15 39336654 39336690 -46359064 + AT_rich Low_complexity Low_complexity 1 36 0 2090 113 17 0 chr15 39336759 39337050 -46358704 + AluSx SINE Alu 1 296 -16 29 47 0 0 chr15 39337452 39337495 -46358259 + AT_rich Low_complexity Low_complexity 1 43 0 395 280 38 23 chr15 39338661 39338793 -46356961 + MIR SINE MIR 73 206 -56 189 121 0 0 chr15 39338833 39338866 -46356888 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1080 215 5 0 chr15 39340235 39340440 -46355314 + MER3 DNA MER1_type 1 206 -3 207 222 238 48 chr15 39340500 39340626 -46355128 - MIR3 SINE MIR -46 162 13 981 6 72 0 chr15 39340658 39340824 -46354930 + (TA)n Simple_repeat Simple_repeat 1 178 0 201 196 0 0 chr15 39340866 39340912 -46354842 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 1039 124 77 0 chr15 39341012 39341181 -46354573 - L1PA12 LINE L1 -15 6153 5972 5336 163 49 9 chr15 39341286 39342355 -46353399 + L1MA4 LINE L1 3635 4745 -1401 4663 148 43 19 chr15 39342356 39343562 -46352192 + L1MA4 LINE L1 5114 6305 0 921 216 73 9 chr15 39343566 39343798 -46351956 + L1MB5 LINE L1 5920 6166 -8 481 307 52 89 chr15 39343804 39344286 -46351468 - LTR67 LTR ERVL -68 489 26 371 272 171 27 chr15 39344343 39344711 -46351043 + L1MB4 LINE L1 4124 4544 -1602 211 307 167 0 chr15 39344987 39345101 -46350653 + MIR SINE MIR 104 236 -26 2074 123 0 0 chr15 39345299 39345584 -46350170 - AluSq SINE Alu -22 291 7 2068 190 39 12 chr15 39346454 39346869 -46348885 - MSTB LTR MaLR 0 426 1 35 83 0 0 chr15 39346921 39347005 -46348749 + AT_rich Low_complexity Low_complexity 1 84 0 400 286 138 22 chr15 39347008 39347319 -46348435 - L1M4 LINE L1 -1005 5141 4795 1507 154 55 22 chr15 39347379 39347652 -46348102 + AluJo SINE Alu 1 282 -30 10916 194 53 7 chr15 39347667 39349947 -46345807 - Cheshire DNA MER1_type -33 2387 2 2238 174 45 5 chr15 39350952 39351371 -46344383 + L1MB2 LINE L1 5654 6089 -82 320 191 0 0 chr15 39351354 39351417 -46344337 + L1MB4 LINE L1 4781 4843 -1303 * 441 130 83 56 chr15 39351432 39351540 -46344214 - L1MB4 LINE L1 0 6180 6070 * 5732 217 48 17 chr15 39351509 39351923 -46343831 - L1M4 LINE L1 -1346 4800 4401 2148 136 91 10 chr15 39351923 39352319 -46343435 - MSTA LTR MaLR 0 428 1 5732 217 48 17 chr15 39352319 39352532 -46343222 - L1M4 LINE L1 -1745 4401 4196 513 47 0 0 chr15 39352532 39352596 -46343158 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 5732 217 48 17 chr15 39352596 39352778 -46342976 - L1M4 LINE L1 -1950 4196 4021 1742 78 0 0 chr15 39352778 39352996 -46342758 - AluY SINE Alu -59 252 35 5732 217 48 17 chr15 39352996 39353670 -46342084 - L1M4 LINE L1 -2125 4021 3268 294 284 10 10 chr15 39353996 39354108 -46341646 + L1ME LINE L1 17 556 -5974 3505 237 56 39 chr15 39354745 39355421 -46340333 + L1ME LINE L1 917 1580 -4960 3309 169 40 29 chr15 39355421 39355504 -46340250 + L1MB4 LINE L1 5442 5523 -657 1917 150 142 8 chr15 39355504 39355898 -46339856 + MER83 LTR ERV1 1 447 -1 3309 169 40 29 chr15 39355898 39356544 -46339210 + L1MB4 LINE L1 5523 6179 -1 3505 237 56 39 chr15 39356544 39356667 -46339087 + L1ME LINE L1 1580 1699 -4841 1708 208 46 37 chr15 39356667 39357124 -46338630 + MER65C LTR ERV1 1 461 0 3505 237 56 39 chr15 39357124 39357735 -46338019 + L1ME LINE L1 1699 2316 -4224 1709 180 64 16 chr15 39357733 39358083 -46337671 + L1ME1 LINE L1 5542 5914 -252 * 3389 126 35 6 chr15 39358083 39358621 -46337133 + MER41C LTR ERV1 1 554 0 1709 180 64 16 chr15 39358621 39358658 -46337096 + L1ME1 LINE L1 5914 5948 -218 943 247 43 10 chr15 39358673 39358973 -46336781 + L1ME LINE L1 2880 3189 -3351 1274 201 49 7 chr15 39358975 39359259 -46336495 + L1ME LINE L1 5834 6129 -431 327 143 18 0 chr15 39359262 39359318 -46336436 - MLT1E3 LTR MaLR 0 624 568 2157 112 0 13 chr15 39359381 39359695 -46336059 + AluSx SINE Alu 1 310 -2 537 309 6 12 chr15 39359875 39360037 -46335717 + MIR SINE MIR 98 258 -4 349 111 0 0 chr15 39361098 39361118 -46334636 + MER51A LTR ERV1 1 20 -614 3899 114 42 10 chr15 39361118 39361738 -46334016 + MER51C LTR ERV1 1 640 0 413 343 80 26 chr15 39361785 39362313 -46333441 + L1MEd LINE L1 530 1085 -5120 515 311 120 11 chr15 39362454 39362921 -46332833 + L1MEd LINE L1 1303 1820 -4576 229 214 18 18 chr15 39363062 39363118 -46332636 + L2 LINE L2 3258 3313 0 233 311 9 47 chr15 39363252 39363358 -46332396 + Charlie8 DNA MER1_type 156 257 -2160 329 240 16 62 chr15 39363676 39363805 -46331949 + Charlie8 DNA MER1_type 126 248 -2169 409 253 113 48 chr15 39363842 39363953 -46331801 + L1MEd LINE L1 1963 2065 -4150 2271 136 17 3 chr15 39363953 39364314 -46331440 - MER47A DNA MER2_type 0 366 1 409 253 113 48 chr15 39364314 39364494 -46331260 + L1MEd LINE L1 2065 2273 -3942 359 189 84 0 chr15 39364515 39364610 -46331144 + L1MEd LINE L1 2329 2431 -3784 440 128 0 13 chr15 39364732 39364810 -46330944 - AluS SINE Alu -233 77 1 1458 251 71 11 chr15 39364811 39365261 -46330493 + L1MC5 LINE L1 5513 5989 -1819 530 272 65 26 chr15 39366742 39367069 -46328685 + L1MC5 LINE L1 7195 7448 -360 1866 156 0 13 chr15 39367101 39367408 -46328346 + AluJb SINE Alu 2 304 -8 266 286 82 60 chr15 39367489 39367671 -46328083 + L1MC4 LINE L1 7770 7955 -87 612 203 39 0 chr15 39367771 39367899 -46327855 + FLAM_A SINE Alu 1 133 0 284 252 49 65 chr15 39368004 39368127 -46327627 + MIR SINE MIR 24 144 -64 24 0 0 0 chr15 39369309 39369333 -46326421 + GC_rich Low_complexity Low_complexity 1 24 0 240 111 0 0 chr15 39369371 39369407 -46326347 + (GGA)n Simple_repeat Simple_repeat 2 37 0 1803 187 39 39 chr15 39369957 39370418 -46325336 - MER65C LTR ERV1 0 461 1 1261 173 47 4 chr15 39371076 39371331 -46324423 - LTR54 LTR ERV1 -7 503 238 1033 167 0 0 chr15 39371360 39371522 -46324232 + FRAM SINE Alu 1 161 -15 955 132 102 49 chr15 39371526 39371731 -46324023 - LTR54 LTR ERV1 -277 233 18 2337 98 12 0 chr15 39371731 39372066 -46323688 + L1PB1 LINE L1 5811 6149 -2 340 290 40 106 chr15 39372814 39373135 -46322619 + MLT1K LTR MaLR 236 535 -53 253 239 145 83 chr15 39373144 39373674 -46322080 + MER34 LTR ERV1 61 542 0 458 282 103 34 chr15 39373726 39374135 -46321619 + MLT1J2 LTR MaLR 1 448 -2 1516 164 69 21 chr15 39374428 39374763 -46320991 - LTR48 LTR ERV1 0 787 437 897 165 30 4 chr15 39374773 39374962 -46320792 - LTR54 LTR ERV1 -92 418 238 829 182 0 0 chr15 39374979 39375111 -46320643 + FRAM SINE Alu 1 131 -45 1690 149 103 61 chr15 39375113 39375521 -46320233 - LTR48 LTR ERV1 -362 425 1 505 355 51 17 chr15 39375904 39376138 -46319616 + LTR16C LTR ERVL 74 315 -176 955 190 151 13 chr15 39376193 39376425 -46319329 + LTR50 LTR ERVL 12 275 -520 4618 168 37 8 chr15 39376451 39376700 -46319054 - L1 LINE L1 -1224 4922 4682 1736 163 9 41 chr15 39376700 39377019 -46318735 - AluJo SINE Alu -2 310 2 4618 168 37 8 chr15 39377019 39377694 -46318060 - L1 LINE L1 -1464 4682 3971 328 204 91 0 chr15 39377708 39377796 -46317958 + MER5C DNA MER1_type 225 320 -4 2301 103 0 0 chr15 39377800 39378101 -46317653 - AluSq SINE Alu -10 303 3 434 342 54 32 chr15 39378125 39378403 -46317351 + MLT1J2 LTR MaLR 153 436 -14 412 358 96 19 chr15 39378450 39378827 -46316927 + L2 LINE L2 2215 2620 -694 27 0 0 0 chr15 39379054 39379081 -46316673 + AT_rich Low_complexity Low_complexity 1 27 0 2154 115 3 3 chr15 39379533 39379829 -46315925 + AluSq SINE Alu 1 296 -17 1262 308 25 49 chr15 39380114 39380683 -46315071 + LTR67 LTR ERVL 3 557 0 354 357 70 6 chr15 39381202 39381359 -46314395 + L2 LINE L2 3105 3271 -1 22 0 0 0 chr15 39382120 39382142 -46313612 + AT_rich Low_complexity Low_complexity 1 22 0 380 262 113 47 chr15 39383161 39383394 -46312360 - L1MEd LINE L1 -4906 1213 960 734 191 0 8 chr15 39383394 39383520 -46312234 - FLAM_A SINE Alu -8 125 1 380 262 113 47 chr15 39383520 39383542 -46312212 - L1MEd LINE L1 -5159 960 941 204 216 0 0 chr15 39383701 39383738 -46312016 + (TG)n Simple_repeat Simple_repeat 2 38 0 1299 169 94 91 chr15 39384016 39384058 -46311696 - MSTC LTR MaLR -24 404 364 2355 99 0 0 chr15 39384058 39384361 -46311393 - AluSg SINE Alu -7 303 1 1299 169 94 91 chr15 39384361 39384691 -46311063 - MSTC LTR MaLR -64 364 31 339 312 107 40 chr15 39384700 39385027 -46310727 - L1MEd LINE L1 -5727 392 44 202 185 15 62 chr15 39385101 39385166 -46310588 + A-rich Low_complexity Low_complexity 3 64 0 21 57 0 0 chr15 39385201 39385236 -46310518 + AT_rich Low_complexity Low_complexity 1 35 0 2028 148 0 3 chr15 39385378 39385676 -46310078 + AluJb SINE Alu 1 297 -15 227 237 44 53 chr15 39385677 39385791 -46309963 + L1MC4 LINE L1 7914 8026 -16 24 0 0 0 chr15 39385797 39385821 -46309933 + AT_rich Low_complexity Low_complexity 1 24 0 328 147 44 0 chr15 39385844 39385912 -46309842 + L1M4 LINE L1 3875 3945 -2201 262 206 44 15 chr15 39386119 39386187 -46309567 - MER96 DNA MER1_type? 0 175 106 277 133 0 22 chr15 39386203 39386248 -46309506 - L1ME LINE L1 -543 5623 5580 2987 204 43 53 chr15 39386250 39387286 -46308468 - L1ME LINE L1 -659 5507 4492 10342 129 16 6 chr15 39387386 39389323 -46306431 - L1P4 LINE L1 -527 5641 3692 192 40 0 0 chr15 39389342 39389367 -46306387 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 267 312 0 13 chr15 39389384 39389461 -46306293 + MIR SINE MIR 175 250 -12 558 191 0 0 chr15 39389531 39389625 -46306129 - AluJb SINE Alu -17 295 202 1573 269 156 48 chr15 39389759 39390819 -46304935 + L2 LINE L2 2123 3309 -4 606 249 105 6 chr15 39391242 39391423 -46304331 + MIR SINE MIR 54 252 -10 35 24 0 0 chr15 39394380 39394422 -46301332 + AT_rich Low_complexity Low_complexity 1 42 0 514 261 126 55 chr15 39394482 39394681 -46301073 - MIR SINE MIR -24 238 26 2274 112 0 13 chr15 39394683 39394996 -46300758 - AluSx SINE Alu -3 309 1 21 0 0 0 chr15 39395778 39395799 -46299955 + AT_rich Low_complexity Low_complexity 1 21 0 1929 156 7 0 chr15 39397159 39397461 -46298293 - AluJb SINE Alu -8 304 1 26 30 0 0 chr15 39399600 39399633 -46296121 + AT_rich Low_complexity Low_complexity 1 33 0 415 310 50 47 chr15 39401537 39402026 -46293728 + HAL1b LINE L1 247 764 -584 257 0 30 0 chr15 39402026 39402059 -46293695 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 415 310 50 47 chr15 39402059 39402185 -46293569 + HAL1b LINE L1 764 888 -460 486 317 88 49 chr15 39402519 39402829 -46292925 + L1M4 LINE L1 2111 2407 -3739 2120 102 10 3 chr15 39402829 39403123 -46292631 - AluSx SINE Alu -16 296 1 486 317 88 49 chr15 39403123 39403424 -46292330 + L1M4 LINE L1 2407 2746 -3400 251 217 108 12 chr15 39403521 39403604 -46292150 + MIR SINE MIR 161 251 -11 2297 54 7 0 chr15 39404917 39405195 -46290559 + AluY SINE Alu 23 302 -9 30 89 0 0 chr15 39405472 39405551 -46290203 + AT_rich Low_complexity Low_complexity 1 79 0 22 0 0 0 chr15 39405596 39405618 -46290136 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr15 39406177 39406209 -46289545 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr15 39406350 39406373 -46289381 + AT_rich Low_complexity Low_complexity 1 23 0 2429 73 0 0 chr15 39406785 39407086 -46288668 + AluY SINE Alu 1 301 -10 180 343 75 45 chr15 39407507 39407574 -46288180 + MIR SINE MIR 18 86 -176 392 292 60 87 chr15 39407609 39407794 -46287960 + MIR SINE MIR 68 247 -15 43 47 0 0 chr15 39409943 39410007 -46285747 + AT_rich Low_complexity Low_complexity 1 64 0 438 20 0 0 chr15 39410974 39411025 -46284729 + (CA)n Simple_repeat Simple_repeat 2 52 0 922 205 186 16 chr15 39411337 39411644 -46284110 + L1MD3 LINE L1 7625 7983 -12 240 251 177 89 chr15 39411684 39411752 -46284002 + L1ME LINE L1 5551 5612 -509 216 0 0 0 chr15 39411752 39411776 -46283978 + (TG)n Simple_repeat Simple_repeat 1 24 0 1976 149 0 0 chr15 39411776 39412058 -46283696 - AluSq SINE Alu -31 282 1 240 251 177 89 chr15 39412058 39412191 -46283563 + L1ME LINE L1 5611 5771 -350 2343 102 0 0 chr15 39412219 39412513 -46283241 - AluSc SINE Alu -15 294 1 438 355 25 10 chr15 39413027 39413227 -46282527 - MIR SINE MIR -58 204 2 323 286 31 31 chr15 39413427 39413525 -46282229 + MER5B DNA MER1_type 3 100 -78 2356 88 0 0 chr15 39413876 39414170 -46281584 - AluSx SINE Alu -18 294 1 3499 192 65 10 chr15 39414311 39415198 -46280556 - Charlie1a DNA MER1_type 0 1455 520 2015 182 85 74 chr15 39415203 39415781 -46279973 + MLT1E LTR MaLR 1 584 -9 23 33 0 0 chr15 39415804 39415834 -46279920 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr15 39416072 39416094 -46279660 + AT_rich Low_complexity Low_complexity 1 22 0 1849 198 54 40 chr15 39416329 39416830 -46278924 - Charlie1a DNA MER1_type -946 509 2 801 293 7 4 chr15 39416908 39417138 -46278616 + MIR SINE MIR 28 260 -2 22 56 0 0 chr15 39417917 39417953 -46277801 + AT_rich Low_complexity Low_complexity 1 36 0 450 0 0 0 chr15 39419596 39419646 -46276108 + (CA)n Simple_repeat Simple_repeat 2 51 0 1924 156 3 0 chr15 39420257 39420561 -46275193 + AluJb SINE Alu 1 305 0 1997 140 0 10 chr15 39421388 39421681 -46274073 + AluSx SINE Alu 5 294 -18 266 346 126 22 chr15 39422110 39422292 -46273462 + MIR SINE MIR 21 221 -41 2056 146 12 86 chr15 39422650 39422878 -46272876 + MLT1B LTR MaLR 4 189 -201 2080 131 0 10 chr15 39422878 39423190 -46272564 + AluSx SINE Alu 1 309 -3 2056 146 12 86 chr15 39423190 39423379 -46272375 + MLT1B LTR MaLR 189 390 0 25 31 0 0 chr15 39423478 39423510 -46272244 + AT_rich Low_complexity Low_complexity 1 32 0 300 298 50 25 chr15 39424463 39424584 -46271170 - L2 LINE L2 0 3272 3149 7363 45 1 0 chr15 39425276 39426705 -46269049 + L1PA5 LINE L1 4724 6153 -1 2154 83 6 55 chr15 39426806 39427132 -46268622 + AluSx SINE Alu 1 310 -2 534 265 37 90 chr15 39427779 39428024 -46267730 + MIR SINE MIR 21 252 -10 2061 113 13 10 chr15 39428069 39428369 -46267385 + AluSx SINE Alu 1 301 -11 1641 138 100 25 chr15 39428440 39428760 -46266994 - MER7A DNA MER2_type -2 344 3 891 157 94 13 chr15 39429045 39429204 -46266550 + AluJb SINE Alu 1 172 -140 2661 238 68 32 chr15 39429312 39429604 -46266150 - L1M4 LINE L1 -1744 4402 4122 2316 93 0 10 chr15 39429604 39429915 -46265839 - AluSg SINE Alu 0 310 3 2661 238 68 32 chr15 39429915 39430570 -46265184 - L1M4 LINE L1 -2024 4122 3421 1111 139 41 0 chr15 39430563 39430757 -46264997 - L1MC2 LINE L1 -511 5833 5632 * 370 345 9 0 chr15 39430759 39430869 -46264885 - MIR SINE MIR -150 112 2 562 101 18 55 chr15 39431034 39431143 -46264611 + L1MB4 LINE L1 6065 6169 -11 594 198 16 2 chr15 39431529 39431679 -46264075 - L1M4 LINE L1 -2693 3453 3303 558 264 140 11 chr15 39431788 39432014 -46263740 + MIR SINE MIR 7 258 -4 211 191 0 0 chr15 39432968 39433010 -46262744 + CT-rich Low_complexity Low_complexity 2 43 0 2742 172 20 57 chr15 39433355 39434513 -46261241 + L1MB8 LINE L1 4773 5830 -354 1193 158 49 1 chr15 39434515 39434802 -46260952 + MER2 DNA MER2_type 4 340 -5 1544 156 6 52 chr15 39434807 39435154 -46260600 + L1MB8 LINE L1 5828 6158 -20 1984 147 10 0 chr15 39435209 39435516 -46260238 + AluSx SINE Alu 1 310 -2 276 30 0 0 chr15 39435516 39435549 -46260205 + (GGAA)n Simple_repeat Simple_repeat 2 34 0 335 276 112 0 chr15 39435761 39435877 -46259877 - L2 LINE L2 -4 3309 3181 321 285 101 51 chr15 39435877 39436035 -46259719 - L2 LINE L2 -247 3066 2901 875 178 56 6 chr15 39436035 39436215 -46259539 - MER5A DNA MER1_type 0 189 1 768 232 7 0 chr15 39436269 39436424 -46259330 - MER63A DNA MER1_type 0 210 55 614 272 31 11 chr15 39436436 39436627 -46259127 - L2 LINE L2 -462 2852 2658 372 234 23 70 chr15 39436663 39436791 -46258963 + MLT1J LTR MaLR 78 199 -312 314 236 14 14 chr15 39437077 39437149 -46258605 - L2 LINE L2 -664 2650 2579 267 253 115 52 chr15 39437164 39437338 -46258416 + LTR33A LTR ERVL 2 186 -337 528 160 0 0 chr15 39437340 39437440 -46258314 + CT-rich Low_complexity Low_complexity 3 102 0 207 0 0 0 chr15 39437436 39437459 -46258295 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 427 245 112 0 chr15 39437520 39437663 -46258091 + LTR33A LTR ERVL 365 523 0 236 245 41 0 chr15 39437665 39437763 -46257991 - L2 LINE L2 -738 2576 2475 223 327 137 7 chr15 39437797 39437950 -46257804 + L2 LINE L2 2366 2538 -776 379 279 122 17 chr15 39438371 39438543 -46257211 + MIR SINE MIR 63 252 -10 1902 111 32 87 chr15 39439356 39439734 -46256020 + MLT2D LTR ERVL 1 357 -57 387 0 0 0 chr15 39439734 39439777 -46255977 + (TC)n Simple_repeat Simple_repeat 2 44 0 309 230 0 0 chr15 39440115 39440189 -46255565 + (TA)n Simple_repeat Simple_repeat 1 74 0 32 0 0 0 chr15 39440740 39440772 -46254982 + AT_rich Low_complexity Low_complexity 1 32 0 2218 115 0 3 chr15 39440992 39441296 -46254458 + AluSp SINE Alu 1 303 -10 738 208 42 17 chr15 39441562 39441897 -46253857 - MLT1D LTR MaLR -7 498 84 368 153 59 110 chr15 39441898 39442016 -46253738 + L2 LINE L2 2573 2684 -630 * 991 261 63 35 chr15 39442015 39442333 -46253421 - L2 LINE L2 -946 2368 2042 898 237 9 0 chr15 39442334 39442545 -46253209 + LTR16B LTR ERVL 252 464 0 1644 173 14 14 chr15 39442573 39442868 -46252886 + AluJo SINE Alu 1 295 -17 655 262 47 37 chr15 39442916 39443130 -46252624 - L2 LINE L2 -1545 1769 1554 383 329 28 19 chr15 39443233 39443393 -46252361 - MIR SINE MIR -59 203 42 2198 135 0 6 chr15 39445326 39445638 -46250116 - AluSx SINE Alu -2 310 1 231 234 106 32 chr15 39445667 39445761 -46249993 + L2 LINE L2 3204 3304 -9 480 136 0 12 chr15 39446412 39446493 -46249261 + MER39 LTR ERV1 6 85 -622 1294 153 9 0 chr15 39446493 39446716 -46249038 - MER41C LTR ERV1 0 554 330 2145 160 127 55 chr15 39446750 39446895 -46248859 + MER39 LTR ERV1 94 227 -480 1570 191 14 3 chr15 39446895 39447183 -46248571 + AluJo SINE Alu 11 301 -11 2145 160 127 55 chr15 39447183 39447411 -46248343 + MER39 LTR ERV1 227 437 -270 1889 128 59 0 chr15 39447411 39447700 -46248054 + AluSx SINE Alu 1 306 -6 2145 160 127 55 chr15 39447700 39447894 -46247860 + MER39 LTR ERV1 437 703 -4 2589 150 71 4 chr15 39448434 39448927 -46246827 - LTR48B LTR ERV1 0 644 119 4703 115 20 43 chr15 39449516 39450936 -46244818 + pTR5 LTR ERV1 743 2438 0 2103 116 14 7 chr15 39451355 39451648 -46244106 + AluSx SINE Alu 1 295 -17 2182 167 0 31 chr15 39451737 39452106 -46243648 + MER41B LTR ERV1 150 505 -130 1936 145 0 0 chr15 39452106 39452416 -46243338 - AluSx SINE Alu 0 310 1 2182 167 0 31 chr15 39452416 39452489 -46243265 + MER41B LTR ERV1 505 579 -56 466 226 169 16 chr15 39452665 39452855 -46242899 + MIR SINE MIR 32 256 -6 263 347 104 52 chr15 39453081 39453349 -46242405 - L2 LINE L2 -3 3269 2988 4178 129 3 2 chr15 39453407 39454041 -46241713 + MER41B LTR ERV1 1 635 0 254 240 70 30 chr15 39454070 39454170 -46241584 - MLT1J LTR MaLR -22 489 386 3735 109 72 5 chr15 39454294 39454888 -46240866 + MER41B LTR ERV1 1 634 -1 260 261 29 0 chr15 39454913 39454982 -46240772 - MLT1L LTR MaLR -335 280 210 198 0 0 0 chr15 39455287 39455309 -46240445 + (A)n Simple_repeat Simple_repeat 1 22 0 603 150 20 0 chr15 39455312 39455412 -46240342 - FLAM_A SINE Alu -20 122 21 2017 138 0 22 chr15 39455883 39456202 -46239552 - AluJb SINE Alu 0 312 1 285 65 87 11 chr15 39456244 39456336 -46239418 + (TA)n Simple_repeat Simple_repeat 2 100 0 300 134 42 21 chr15 39456439 39456581 -46239173 + (TA)n Simple_repeat Simple_repeat 2 146 0 1747 254 118 51 chr15 39456602 39457542 -46238212 - HAL1 LINE L1 -398 2109 1060 2146 110 34 0 chr15 39457542 39457833 -46237921 - AluSg SINE Alu -7 303 3 1747 254 118 51 chr15 39457833 39458165 -46237589 - HAL1 LINE L1 -1447 1060 752 1484 199 17 10 chr15 39458431 39458728 -46237026 + MER47B DNA MER2_type 2 300 -118 7120 60 3 0 chr15 39458728 39460164 -46235590 + L1PA8 LINE L1 4713 6159 -13 628 139 15 80 chr15 39460489 39460541 -46235213 + MER47B DNA MER2_type 291 345 -1978 1637 214 3 3 chr15 39460541 39460844 -46234910 - AluJo SINE Alu -9 303 1 628 139 15 80 chr15 39460844 39460928 -46234826 + MER47B DNA MER2_type 345 418 0 432 247 26 2 chr15 39461032 39461157 -46234597 - L1MC/D LINE L1 -469 5652 5540 21 36 0 0 chr15 39461292 39461320 -46234434 + AT_rich Low_complexity Low_complexity 1 28 0 5767 116 3 10 chr15 39461425 39462344 -46233410 - L1PA16 LINE L1 0 6166 5254 5859 117 0 0 chr15 39461443 39462673 -46233081 - L1PA16 LINE L1 -18 6148 4925 5707 175 8 8 chr15 39462673 39463827 -46231927 + L1PA16 LINE L1 3796 4949 -1197 302 156 42 73 chr15 39463973 39464069 -46231685 - L1MC/D LINE L1 -322 5799 5724 371 326 79 45 chr15 39464169 39464460 -46231294 - L3 LINE CR1 -353 1224 924 362 324 45 34 chr15 39464480 39464659 -46231095 + L3 LINE CR1 708 888 -689 198 167 83 0 chr15 39464720 39464768 -46230986 - L3 LINE CR1 -581 996 945 354 328 76 0 chr15 39465288 39465407 -46230347 + L3 LINE CR1 980 1107 -470 1538 148 16 4 chr15 39465407 39465657 -46230097 - MLT1B LTR MaLR 0 390 138 2249 113 10 0 chr15 39465859 39466169 -46229585 + AluSq SINE Alu 1 313 0 870 143 0 26 chr15 39466231 39466274 -46229480 - MLT1B LTR MaLR -240 150 107 2339 88 0 16 chr15 39466274 39466581 -46229173 - AluSx SINE Alu -8 304 3 870 143 0 26 chr15 39466581 39466691 -46229063 - MLT1B LTR MaLR -283 107 1 405 227 0 0 chr15 39466980 39467055 -46228699 + MIR3 SINE MIR 127 201 -7 30 27 0 0 chr15 39467066 39467103 -46228651 + AT_rich Low_complexity Low_complexity 1 37 0 345 169 0 0 chr15 39468205 39468264 -46227490 - MLT1G1 LTR MaLR 0 595 537 889 199 17 6 chr15 39468265 39468441 -46227313 - MER58A DNA MER1_type -4 220 43 1554 166 91 11 chr15 39468444 39468709 -46227045 + AluJo SINE Alu 1 286 -26 313 254 207 37 chr15 39468824 39469187 -46226567 - MLT1H LTR MaLR -92 503 72 1640 146 91 11 chr15 39469632 39469906 -46225848 + AluJb SINE Alu 6 301 -11 1896 214 126 10 chr15 39469930 39470508 -46225246 - L1MC4 LINE L1 -674 7368 6724 2097 131 0 0 chr15 39470518 39470808 -46224946 - AluSx SINE Alu -22 290 1 1180 246 62 0 chr15 39471132 39471437 -46224317 + LTR16C LTR ERVL 168 491 0 248 269 134 25 chr15 39471780 39471899 -46223855 + L2 LINE L2 3182 3313 0 23 0 0 0 chr15 39472036 39472059 -46223695 + AT_rich Low_complexity Low_complexity 1 23 0 292 211 40 0 chr15 39472533 39472609 -46223145 + MLT1K LTR MaLR 492 570 -18 1547 178 25 4 chr15 39472742 39473017 -46222737 + AluJo SINE Alu 22 302 -10 270 56 0 0 chr15 39473017 39473053 -46222701 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 465 353 69 30 chr15 39473452 39473786 -46221968 + L2 LINE L2 2319 2665 -649 269 309 117 11 chr15 39473940 39474034 -46221720 + MLT1K LTR MaLR 42 145 -443 286 289 19 10 chr15 39474078 39474182 -46221572 + MLT1K LTR MaLR 142 246 -342 428 147 15 0 chr15 39475655 39475723 -46220031 - Tigger7 DNA MER2_type -8 2479 2411 2869 184 19 2 chr15 39475733 39476249 -46219505 - Tigger7 DNA MER2_type -1961 526 2 1886 147 3 0 chr15 39476610 39476896 -46218858 + AluJo SINE Alu 1 287 -25 2452 132 38 73 chr15 39476910 39477433 -46218321 + L1MB3 LINE L1 5679 6183 0 261 132 0 0 chr15 39477433 39477486 -46218268 + L1MB3 LINE L1 6131 6183 0 375 259 12 12 chr15 39477580 39477665 -46218089 - L2 LINE L2 -37 3276 3192 930 282 80 17 chr15 39477774 39478125 -46217629 - MLT1J LTR MaLR -138 373 1 273 279 53 128 chr15 39478288 39478664 -46217090 - MLT1G1-int LTR MaLR -184 1187 840 502 332 20 0 chr15 39479040 39479290 -46216464 - MLT1G1-int LTR MaLR -832 539 285 249 254 93 8 chr15 39479292 39479410 -46216344 - MLT1G1-int LTR MaLR -1235 136 9 1231 261 156 16 chr15 39479416 39479929 -46215825 - MLT1G1 LTR MaLR 0 595 11 274 246 14 0 chr15 39479941 39480010 -46215744 + LTR16A1 LTR ERVL 380 449 -8 2250 153 57 39 chr15 39480010 39480469 -46215285 - MLT1C LTR MaLR 0 467 1 2278 150 81 25 chr15 39480508 39480729 -46215025 + MER61D LTR ERV1 30 237 -264 2252 116 73 14 chr15 39480729 39481073 -46214681 + THE1B LTR MaLR 1 364 0 2278 150 81 25 chr15 39481073 39481298 -46214456 + MER61D LTR ERV1 237 501 0 2356 110 0 0 chr15 39481326 39481635 -46214119 + AluSx SINE Alu 3 311 -1 217 302 167 10 chr15 39481636 39481732 -46214022 + MIR SINE MIR 151 261 -1 215 255 0 0 chr15 39481734 39481781 -46213973 + L2 LINE L2 3193 3239 -33 229 283 0 0 chr15 39481786 39481846 -46213908 + MLT1K LTR MaLR 3 62 -526 756 317 44 30 chr15 39483623 39483989 -46211765 + MLT1K LTR MaLR 56 426 -162 919 259 73 75 chr15 39484055 39484576 -46211178 + LTR67 LTR ERVL 29 548 -9 331 308 45 30 chr15 39484633 39484765 -46210989 - MIR SINE MIR -88 174 42 284 171 0 53 chr15 39485511 39485587 -46210167 - LTR33 LTR ERVL 0 521 450 1891 119 3 59 chr15 39485596 39485921 -46209833 + AluSx SINE Alu 1 308 0 649 123 160 0 chr15 39485959 39486065 -46209689 - FLAM_C SINE Alu -10 123 1 367 243 97 28 chr15 39486122 39486266 -46209488 - LTR33 LTR ERVL -164 357 204 326 191 155 0 chr15 39486342 39486426 -46209328 - LTR33 LTR ERVL -424 97 1 2391 85 13 0 chr15 39486525 39486831 -46208923 - AluSx SINE Alu -2 310 1 410 371 27 11 chr15 39486908 39487094 -46208660 - MIR3 SINE MIR -4 204 16 823 159 31 45 chr15 39488158 39488354 -46207400 - MER31B LTR ERV1 -302 164 1 282 160 0 0 chr15 39488418 39488468 -46207286 + GA-rich Low_complexity Low_complexity 3 52 0 360 195 187 8 chr15 39488542 39488665 -46207089 - MARNA DNA Mariner -249 337 193 282 267 167 11 chr15 39488665 39488755 -46206999 - MER81 DNA DNA 0 114 11 226 208 0 19 chr15 39488831 39488884 -46206870 + MARNA DNA Mariner 397 448 -138 22 0 0 0 chr15 39489120 39489142 -46206612 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr15 39489249 39489282 -46206472 + (TG)n Simple_repeat Simple_repeat 1 33 0 2482 269 96 27 chr15 39490198 39491239 -46204515 + L2 LINE L2 1383 2495 -819 740 216 41 5 chr15 39493440 39493634 -46202120 - MER3 DNA MER1_type -4 205 5 1895 149 21 0 chr15 39493683 39493971 -46201783 - AluSx SINE Alu -18 294 1 591 259 86 0 chr15 39494118 39494280 -46201474 - MER45A DNA AcHobo -1 177 2 2182 121 7 0 chr15 39494781 39495079 -46200675 + AluSq SINE Alu 11 310 -3 1939 137 38 10 chr15 39495732 39496025 -46199729 + AluSx SINE Alu 1 301 -11 763 155 23 0 chr15 39496084 39496213 -46199541 + AluSg/x SINE Alu 180 311 -1 342 262 157 56 chr15 39496223 39496509 -46199245 + L1ME LINE L1 2128 2442 -3704 411 268 114 87 chr15 39496737 39497810 -46197944 + L1ME LINE L1 2675 3776 -2370 689 298 43 10 chr15 39498299 39498598 -46197156 - MLT1J LTR MaLR -200 311 3 339 344 51 27 chr15 39498608 39498864 -46196890 + L1ME LINE L1 4009 4270 -1876 324 0 0 0 chr15 39498922 39498958 -46196796 + (TG)n Simple_repeat Simple_repeat 1 36 0 2228 120 0 7 chr15 39499346 39499647 -46196107 + AluSx SINE Alu 1 299 -13 234 257 48 9 chr15 39499756 39499861 -46195893 + L1ME LINE L1 4908 5016 -1130 866 275 43 36 chr15 39500082 39500570 -46195184 + L1ME LINE L1 5257 5751 -411 1788 174 3 16 chr15 39500588 39500898 -46194856 + AluJb SINE Alu 5 310 -2 24 53 0 0 chr15 39501423 39501461 -46194293 + AT_rich Low_complexity Low_complexity 1 38 0 2267 113 0 10 chr15 39503188 39503497 -46192257 + AluSg SINE Alu 1 306 -4 345 325 31 55 chr15 39503547 39503710 -46192044 - MIR3 SINE MIR -16 192 34 217 343 14 21 chr15 39503936 39504079 -46191675 + L2 LINE L2 2814 2955 -317 475 355 46 55 chr15 39504159 39504506 -46191248 - L2 LINE L2 -1 3271 2928 215 216 0 0 chr15 39505492 39505529 -46190225 + (TG)n Simple_repeat Simple_repeat 2 38 0 544 276 36 55 chr15 39506067 39506342 -46189412 + MLT1K LTR MaLR 234 503 -85 423 56 0 0 chr15 39506648 39506702 -46189052 + (TA)n Simple_repeat Simple_repeat 2 55 0 298 319 83 35 chr15 39506849 39506993 -46188761 - L2 LINE L2 0 3272 3122 21 0 0 0 chr15 39507347 39507368 -46188386 + AT_rich Low_complexity Low_complexity 1 21 0 373 318 108 0 chr15 39507954 39508083 -46187671 - MIR3 SINE MIR -22 186 44 1745 164 63 0 chr15 39508343 39508629 -46187125 - AluJo SINE Alu -8 304 1 27 0 0 0 chr15 39509212 39509239 -46186515 + AT_rich Low_complexity Low_complexity 1 27 0 1962 150 3 0 chr15 39509316 39509610 -46186144 - AluSx SINE Alu -17 295 1 704 288 88 25 chr15 39510145 39510465 -46185289 + L2 LINE L2 2194 2533 -781 391 281 30 43 chr15 39510491 39510655 -46185099 + L1ME LINE L1 5615 5776 -345 21 57 0 0 chr15 39510716 39510751 -46185003 + AT_rich Low_complexity Low_complexity 1 35 0 963 204 26 48 chr15 39510753 39511067 -46184687 - L1MA9 LINE L1 -42 6270 5971 1047 311 58 34 chr15 39511084 39512133 -46183621 + L1MEd LINE L1 357 1531 -1045 334 286 0 0 chr15 39512194 39512306 -46183448 + L1MEd LINE L1 1583 1694 -4702 24 0 0 0 chr15 39512446 39512470 -46183284 + AT_rich Low_complexity Low_complexity 1 24 0 612 327 46 13 chr15 39512751 39513057 -46182697 - LTR33 LTR ERVL 0 521 206 309 230 46 11 chr15 39513092 39513179 -46182575 - LTR33 LTR ERVL -389 132 43 627 270 38 96 chr15 39513219 39513333 -46182421 + L1MEd LINE L1 2197 2316 -4080 2039 106 3 27 chr15 39513333 39513669 -46182085 - AluSx SINE Alu 0 329 1 627 270 38 96 chr15 39513669 39513898 -46181856 + L1MEd LINE L1 2316 2521 -3875 541 217 54 8 chr15 39513904 39514033 -46181721 + MER63 DNA MER1_type 4 764 -72 296 251 94 21 chr15 39514215 39514406 -46181348 + L1MC4 LINE L1 7703 7907 -135 235 217 0 0 chr15 39514440 39514486 -46181268 + CT-rich Low_complexity Low_complexity 3 48 0 1121 272 80 61 chr15 39514487 39515211 -46180543 + L1ME3 LINE L1 47 784 -5758 299 314 12 0 chr15 39515231 39515317 -46180437 + CT-rich Low_complexity Low_complexity 2 88 0 1471 220 91 37 chr15 39515319 39515881 -46179873 + L1ME3 LINE L1 1866 2463 -4183 1696 59 0 51 chr15 39515881 39516117 -46179637 - AluY SINE Alu -3 308 85 1471 220 91 37 chr15 39516117 39516149 -46179605 + L1ME3 LINE L1 2463 2492 -4154 587 121 0 0 chr15 39516151 39516234 -46179520 + FRAM SINE Alu 72 154 -22 398 161 9 27 chr15 39516238 39516350 -46179404 + L1ME3 LINE L1 2485 2594 -4052 4264 133 3 9 chr15 39516867 39517553 -46178201 - L1PB4 LINE L1 0 6156 5475 689 152 18 88 chr15 39517603 39517721 -46178033 + L1ME3 LINE L1 2582 2722 -3985 2326 89 0 0 chr15 39517721 39518034 -46177720 - AluSc SINE Alu 0 313 1 689 152 18 88 chr15 39518034 39518130 -46177624 + L1ME3 LINE L1 2722 2823 -3884 1490 187 57 76 chr15 39518135 39518304 -46177450 + MLT1C LTR MaLR 6 177 -290 1220 163 0 184 chr15 39518304 39518673 -46177081 + AluJo SINE Alu 1 301 -1 1490 187 57 76 chr15 39518673 39518974 -46176780 + MLT1C LTR MaLR 177 467 0 1961 216 31 63 chr15 39518974 39519304 -46176450 + L1MB5 LINE L1 2779 3118 -3526 1510 88 17 58 chr15 39519304 39519544 -46176210 - MER30 DNA MER1_type 0 230 1 1961 216 31 63 chr15 39519544 39519959 -46175795 + L1MB5 LINE L1 3118 3500 -3144 1555 168 90 0 chr15 39519988 39520256 -46175498 + AluJb SINE Alu 5 296 -16 180 0 0 0 chr15 39520285 39520305 -46175449 + (TAA)n Simple_repeat Simple_repeat 2 21 0 6209 196 49 20 chr15 39520307 39521468 -46174286 + L1MB5 LINE L1 4000 5126 -1546 2140 113 10 0 chr15 39521468 39521769 -46173985 + AluSq SINE Alu 1 304 -9 6209 196 49 20 chr15 39521769 39522311 -46173443 + L1MB5 LINE L1 5126 5651 -1021 2086 93 33 37 chr15 39522311 39522611 -46173143 + AluSg SINE Alu 1 299 -11 6209 196 49 20 chr15 39522611 39523504 -46172250 + L1MB5 LINE L1 5651 6672 0 385 333 60 15 chr15 39523703 39523970 -46171784 + L1ME3 LINE L1 2980 3258 -3386 552 178 0 10 chr15 39524212 39524313 -46171441 - FLAM_C SINE Alu -11 132 33 483 279 68 76 chr15 39524420 39524781 -46170973 + L1ME3 LINE L1 3613 3975 -2669 1929 127 34 0 chr15 39524781 39525072 -46170682 + AluSx SINE Alu 1 301 -11 483 279 68 76 chr15 39525072 39525116 -46170638 + L1ME3 LINE L1 3975 4018 -2626 468 48 0 0 chr15 39525116 39525179 -46170575 + (CA)n Simple_repeat Simple_repeat 1 63 0 483 279 68 76 chr15 39525179 39525429 -46170325 + L1ME3 LINE L1 4018 4264 -2380 464 268 22 7 chr15 39525504 39525642 -46170112 + MER63A DNA MER1_type 48 187 -23 595 288 68 3 chr15 39525648 39525959 -46169795 + L1ME3 LINE L1 5358 5698 -946 289 342 83 51 chr15 39526127 39526478 -46169276 + L2 LINE L2 1752 2113 -1201 212 146 49 0 chr15 39526510 39526551 -46169203 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 341 250 26 79 chr15 39526552 39526704 -46169050 - HAL1b LINE L1 -12 1336 1193 476 283 82 45 chr15 39526809 39527050 -46168704 - MIR SINE MIR 0 262 17 439 292 137 35 chr15 39527199 39527565 -46168189 - MLT1L LTR MaLR -210 405 3 668 267 66 18 chr15 39527588 39527861 -46167893 - L1ME LINE L1 -336 5785 5500 250 367 20 0 chr15 39528089 39528187 -46167567 + L2 LINE L2 3160 3259 -13 381 299 101 66 chr15 39528187 39528552 -46167202 - L1ME4a LINE L1 -197 5924 5547 2519 76 0 16 chr15 39528553 39528867 -46166887 - AluSq SINE Alu -4 309 1 225 277 92 29 chr15 39528891 39529129 -46166625 - L1ME4a LINE L1 -723 5519 5267 264 317 30 30 chr15 39529329 39529430 -46166324 + L2 LINE L2 2622 2722 -592 624 273 32 32 chr15 39529691 39529944 -46165810 + L1ME3 LINE L1 6164 6416 -244 1365 187 43 126 chr15 39529965 39530262 -46165492 + L1PB2 LINE L1 5138 5458 -693 2084 124 6 40 chr15 39530262 39530584 -46165170 + AluSq SINE Alu 1 311 -2 1365 187 43 126 chr15 39530584 39530669 -46165085 + L1PB2 LINE L1 5458 5548 -603 2250 109 0 3 chr15 39530669 39530980 -46164774 + AluSg SINE Alu 1 310 0 1365 187 43 126 chr15 39530980 39531796 -46163958 + L1PB2 LINE L1 5548 5937 -214 3529 120 53 61 chr15 39530980 39531307 -46164447 + L1MA8 LINE L1 5432 5760 -531 2296 101 0 10 chr15 39531307 39531613 -46164141 + AluSx SINE Alu 1 303 -9 3529 120 53 61 chr15 39531613 39532020 -46163734 + L1MA8 LINE L1 5760 6160 -131 * 5792 90 24 39 chr15 39532014 39532976 -46162778 + L1MA2 LINE L1 5353 6300 -4 737 114 15 0 chr15 39532996 39533127 -46162627 + L1MA8 LINE L1 6158 6290 -1 1609 246 27 14 chr15 39533141 39533766 -46161988 + L1M4 LINE L1 2148 2780 -3366 * 5272 204 36 69 chr15 39533765 39533891 -46161863 + L1M4 LINE L1 3087 3216 -2930 1989 149 0 0 chr15 39533891 39534180 -46161574 + AluJo SINE Alu 12 300 -12 5272 204 36 69 chr15 39534180 39534465 -46161289 + L1M4 LINE L1 3216 3509 -2637 1656 128 0 16 chr15 39534465 39534708 -46161046 + AluSq SINE Alu 1 239 -74 5272 204 36 69 chr15 39534708 39536202 -46159552 + L1M4 LINE L1 3509 4930 -1216 1922 119 3 33 chr15 39536372 39536675 -46159079 + AluSx SINE Alu 1 294 -18 264 248 30 0 chr15 39536722 39536823 -46158931 + L1M LINE L1 5325 5428 -931 246 268 244 0 chr15 39537163 39537245 -46158509 - MIR SINE MIR -43 219 118 435 149 0 0 chr15 39537255 39537322 -46158432 - Charlie3 DNA MER1_type -9 2701 2635 277 240 45 0 chr15 39537622 39537689 -46158065 + MIR SINE MIR 34 100 -108 214 261 204 23 chr15 39538157 39538245 -46157509 + L2 LINE L2 3169 3272 0 2005 147 17 20 chr15 39539327 39539675 -46156079 - MER7A DNA MER2_type 0 346 2 406 245 49 0 chr15 39539738 39539840 -46155914 - MER91C DNA MER1_type 0 140 34 722 205 9 112 chr15 39540046 39540129 -46155625 - MIR SINE MIR 0 262 172 2334 75 0 32 chr15 39540129 39540437 -46155317 - AluY SINE Alu -13 298 1 722 205 9 112 chr15 39540437 39540568 -46155186 - MIR SINE MIR -90 172 70 1825 159 3 34 chr15 39540755 39541076 -46154678 + AluJb SINE Alu 1 311 -1 206 304 51 25 chr15 39542889 39542968 -46152786 - L2 LINE L2 -8 3305 3225 268 323 43 0 chr15 39543011 39543104 -46152650 - L2 LINE L2 -816 2498 2402 537 266 78 115 chr15 39543111 39543634 -46152120 + MLT1J LTR MaLR 7 510 -1 831 138 24 95 chr15 39543922 39543991 -46151763 - Tigger6 DNA MER2_type -16 1581 1509 2236 91 3 3 chr15 39543991 39544276 -46151478 + AluSc SINE Alu 1 285 -24 831 138 24 95 chr15 39544276 39544415 -46151339 - Tigger6 DNA MER2_type -88 1509 1388 879 137 7 14 chr15 39544415 39544561 -46151193 - Tigger7 DNA MER2_type -1 2490 2346 852 148 0 0 chr15 39544561 39544683 -46151071 + FLAM_C SINE Alu 2 123 -10 257 227 21 165 chr15 39544778 39544972 -46150782 - L2 LINE L2 -36 3277 3112 475 227 32 19 chr15 39545061 39545215 -46150539 + L1MC4 LINE L1 7421 7576 -466 1600 134 0 4 chr15 39545581 39545819 -46149935 + AluSx SINE Alu 59 295 -17 1547 160 69 45 chr15 39545822 39546110 -46149644 + AluJo SINE Alu 1 295 -17 1356 156 46 66 chr15 39546110 39546168 -46149586 - Charlie1a DNA MER1_type -1423 1338 1280 1952 132 3 26 chr15 39546168 39546516 -46149238 + L1MB3 LINE L1 5842 6181 -2 1356 156 46 66 chr15 39546516 39546654 -46149100 - Charlie1a DNA MER1_type -1481 1280 1141 2194 74 78 0 chr15 39546654 39546937 -46148817 + AluSx SINE Alu 1 305 -7 1356 156 46 66 chr15 39546937 39547131 -46148623 - Charlie1a DNA MER1_type -1620 1141 955 2160 125 0 0 chr15 39547146 39547441 -46148313 + AluY SINE Alu 1 295 -16 1822 212 50 13 chr15 39547442 39547905 -46147849 - Charlie1a DNA MER1_type -648 807 328 1543 261 80 33 chr15 39547907 39548150 -46147604 + L1M4 LINE L1 3957 4187 -1959 2294 114 0 0 chr15 39548150 39548456 -46147298 + AluSg SINE Alu 1 306 -4 1543 261 80 33 chr15 39548456 39548916 -46146838 + L1M4 LINE L1 4187 4693 -1453 1532 203 4 4 chr15 39548977 39549282 -46146472 - AluJo SINE Alu 0 306 2 1139 232 43 65 chr15 39549284 39549629 -46146125 + L1ME3 LINE L1 3325 3676 -2470 1864 223 3 8 chr15 39549629 39550019 -46145735 + MLT1B LTR MaLR 3 390 0 1139 232 43 65 chr15 39550019 39551305 -46144449 + L1ME3 LINE L1 3676 5117 -1029 475 194 25 134 chr15 39551320 39551414 -46144340 - Charlie1a DNA MER1_type -2576 185 122 2054 123 0 0 chr15 39551414 39551730 -46144024 + AluSx SINE Alu 1 316 0 475 194 25 134 chr15 39551730 39551835 -46143919 - Charlie1a DNA MER1_type -2639 122 7 695 213 121 56 chr15 39551846 39552095 -46143659 + L1ME3 LINE L1 5807 6071 -91 21 36 0 0 chr15 39552129 39552157 -46143597 + AT_rich Low_complexity Low_complexity 1 28 0 233 274 24 0 chr15 39552157 39552241 -46143513 - Charlie2 DNA MER1_type -335 2527 2442 249 284 54 0 chr15 39552479 39552553 -46143201 - L2 LINE L2 0 3272 3195 277 303 184 0 chr15 39553649 39553758 -46141996 + L2 LINE L2 3143 3271 -1 1405 193 12 72 chr15 39554283 39554405 -46141349 + AluJo SINE Alu 1 129 -183 2369 79 0 0 chr15 39554405 39554695 -46141059 - AluSg SINE Alu -20 290 1 1405 193 12 72 chr15 39554695 39554893 -46140861 + AluJo SINE Alu 129 302 -10 248 130 22 0 chr15 39554916 39554962 -46140792 + G-rich Low_complexity Low_complexity 4 50 0 272 274 85 9 chr15 39555175 39555281 -46140473 + MLT1L LTR MaLR 171 284 -331 321 155 0 0 chr15 39555289 39555347 -46140407 + GA-rich Low_complexity Low_complexity 1 58 0 539 298 37 28 chr15 39555414 39555632 -46140122 + MLT1L LTR MaLR 372 591 -24 27 0 0 0 chr15 39557356 39557383 -46138371 + GC_rich Low_complexity Low_complexity 1 27 0 302 284 103 73 chr15 39557442 39557646 -46138108 - L1M2 LINE L1 -5881 968 759 1065 304 38 56 chr15 39558239 39558742 -46137012 - L2 LINE L2 0 3313 2820 201 358 72 41 chr15 39558999 39559387 -46136367 + L2 LINE L2 2271 2670 -644 1914 126 3 48 chr15 39559501 39559811 -46135943 - AluJb SINE Alu -16 296 1 394 279 38 13 chr15 39559983 39560141 -46135613 - MLT1K LTR MaLR -6 582 421 647 130 30 10 chr15 39560141 39560241 -46135513 + AluSg/x SINE Alu 197 298 -14 369 269 31 31 chr15 39560314 39560444 -46135310 - MLT1K LTR MaLR -323 265 136 578 286 107 18 chr15 39561186 39561522 -46134232 + MLT1J2 LTR MaLR 65 395 -55 2259 120 3 0 chr15 39561584 39561893 -46133861 - AluSq SINE Alu -3 310 1 670 258 104 21 chr15 39562735 39562975 -46132779 - MLT1K LTR MaLR -109 479 220 1395 271 105 0 chr15 39563320 39563766 -46131988 - LTR33 LTR ERVL -28 493 1 235 104 0 62 chr15 39564624 39564672 -46131082 - L2 LINE L2 0 3272 3228 468 256 188 0 chr15 39564709 39564842 -46130912 - MER5A DNA MER1_type -1 188 31 2262 140 14 8 chr15 39565022 39565386 -46130368 - MER47A DNA MER2_type 0 366 1 922 242 43 3 chr15 39565398 39565678 -46130076 + L1MB7 LINE L1 5884 6173 -11 366 286 9 38 chr15 39565725 39565830 -46129924 - MIR SINE MIR -113 149 48 831 270 109 72 chr15 39566067 39566570 -46129184 - LTR67 LTR ERVL -11 546 25 383 281 47 53 chr15 39566629 39566693 -46129061 + MER5A DNA MER1_type 14 77 -112 2534 54 0 16 chr15 39566693 39567009 -46128745 + AluY SINE Alu 1 311 0 383 281 47 53 chr15 39567009 39567064 -46128690 + MER5A DNA MER1_type 77 134 -55 2559 111 3 14 chr15 39567064 39567432 -46128322 + THE1B LTR MaLR 1 364 0 383 281 47 53 chr15 39567432 39567482 -46128272 + MER5A DNA MER1_type 134 183 -6 838 98 55 31 chr15 39567562 39567725 -46128029 - MER53 DNA DNA 0 189 23 6369 93 7 10 chr15 39568190 39569237 -46126517 + L1PA10 LINE L1 5120 6163 -5 1746 163 27 7 chr15 39569389 39569684 -46126070 + AluJb SINE Alu 1 301 -11 2076 93 64 0 chr15 39570159 39570439 -46125315 - AluSx SINE Alu -14 298 1 1652 160 5 97 chr15 39570534 39570916 -46124838 - MER7A DNA MER2_type -1 345 1 982 193 0 0 chr15 39571028 39571199 -46124555 + AluJb SINE Alu 134 304 -8 1522 204 60 73 chr15 39571213 39571840 -46123914 + L1MC5 LINE L1 6805 7424 -533 1826 195 0 0 chr15 39571840 39572147 -46123607 + AluJo SINE Alu 1 307 -5 364 67 33 0 chr15 39572151 39572211 -46123543 + (GGAA)n Simple_repeat Simple_repeat 1 62 0 789 227 80 33 chr15 39572211 39572576 -46123178 + L1MC5 LINE L1 7412 7793 -168 284 155 24 48 chr15 39572583 39572667 -46123087 + L1MC5 LINE L1 7835 7916 -45 255 275 39 51 chr15 39572674 39572852 -46122902 + L1ME4a LINE L1 5887 6062 -59 990 111 0 22 chr15 39573166 39573301 -46122453 + AluSx SINE Alu 1 132 -181 6147 40 8 0 chr15 39573301 39574096 -46121658 - L1PA5 LINE L1 -1620 4526 3726 7375 44 0 0 chr15 39574096 39575731 -46120023 + L1PA5 LINE L1 4515 6153 -1 1139 193 0 0 chr15 39575761 39575953 -46119801 + AluSx SINE Alu 119 310 0 259 265 80 31 chr15 39576649 39576811 -46118943 - L1M2 LINE L1 -743 5557 5388 1572 114 14 0 chr15 39578694 39578905 -46116849 + AluJo SINE Alu 84 297 -15 791 181 0 114 chr15 39579074 39579135 -46116619 - MER5A DNA MER1_type -3 186 120 2211 86 3 20 chr15 39579135 39579439 -46116315 + AluSc SINE Alu 1 299 -10 791 181 0 114 chr15 39579439 39579587 -46116167 - MER5A DNA MER1_type -69 120 1 1241 112 0 0 chr15 39579768 39579937 -46115817 - AluSq SINE Alu 0 313 145 300 268 70 14 chr15 39579937 39580079 -46115675 + HAL1 LINE L1 805 954 -1553 749 184 0 15 chr15 39580253 39580389 -46115365 + AluSq/x SINE Alu 1 134 -179 578 276 83 33 chr15 39580424 39580822 -46114932 + HAL1 LINE L1 1142 1559 -948 996 173 18 0 chr15 39580822 39580990 -46114764 - FAM SINE Alu -1 174 4 2054 128 23 7 chr15 39581114 39581418 -46114336 + AluSx SINE Alu 1 309 -3 442 264 24 24 chr15 39581573 39581698 -46114056 + L2 LINE L2 3188 3312 -1 1695 183 7 7 chr15 39581906 39582191 -46113563 - AluJo SINE Alu -16 296 12 1310 156 10 0 chr15 39582246 39582445 -46113309 - AluJo SINE Alu -107 205 5 2045 134 7 3 chr15 39582753 39583060 -46112694 + AluSx SINE Alu 1 308 -4 2067 140 0 3 chr15 39583069 39583361 -46112393 + AluJb SINE Alu 1 291 -21 384 233 12 0 chr15 39583369 39583455 -46112299 - HAL1 LINE L1 -2419 88 2 243 237 17 17 chr15 39583463 39583522 -46112232 - L2 LINE L2 0 3313 3255 1925 150 7 3 chr15 39584119 39584413 -46111341 - AluJb SINE Alu -17 295 1 1670 193 3 14 chr15 39584844 39585139 -46110615 + AluJb SINE Alu 2 293 -19 208 364 82 0 chr15 39585139 39585249 -46110505 + L2 LINE L2 3187 3305 -8 249 357 92 10 chr15 39585592 39585690 -46110064 - L2 LINE L2 -30 3242 3137 628 176 32 0 chr15 39585937 39586062 -46109692 + MSTD LTR MaLR 1 129 -267 799 176 33 7 chr15 39586085 39586238 -46109516 + MSTD LTR MaLR 240 396 0 2196 100 3 3 chr15 39586445 39586745 -46109009 + AluSx SINE Alu 1 300 -12 251 179 160 38 chr15 39586906 39587012 -46108742 - MLT1L LTR MaLR -331 284 166 736 161 213 14 chr15 39587340 39587551 -46108203 - MER2 DNA MER2_type -92 253 1 28 48 0 0 chr15 39588982 39589024 -46106730 + GC_rich Low_complexity Low_complexity 1 42 0 331 322 81 81 chr15 39589120 39589468 -46106286 - L1M2 LINE L1 -5729 1120 773 30 45 0 0 chr15 39589597 39589641 -46106113 + GC_rich Low_complexity Low_complexity 1 44 0 210 37 0 0 chr15 39590080 39590107 -46105647 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 198 0 0 0 chr15 39590537 39590559 -46105195 + (TG)n Simple_repeat Simple_repeat 2 23 0 21 82 0 0 chr15 39591587 39591636 -46104118 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr15 39591672 39591696 -46104058 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr15 39591933 39591979 -46103775 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr15 39592950 39592982 -46102772 + AT_rich Low_complexity Low_complexity 1 32 0 1054 203 18 5 chr15 39594169 39594386 -46101368 - L1MD1 LINE L1 -14 6228 6009 2086 133 0 10 chr15 39594966 39595267 -46100487 + AluSx SINE Alu 1 298 -14 2093 120 0 3 chr15 39596084 39596375 -46099379 + AluSx SINE Alu 6 295 -17 845 257 10 5 chr15 39596748 39596954 -46098800 + MIR SINE MIR 32 238 -24 362 286 136 0 chr15 39597321 39597475 -46098279 - L1ME4a LINE L1 0 6121 5947 321 249 72 64 chr15 39597500 39597749 -46098005 - L1ME4a LINE L1 -225 5896 5646 587 294 41 5 chr15 39598112 39598309 -46097445 + MIR SINE MIR 1 204 -58 282 303 0 0 chr15 39598421 39598497 -46097257 - MIR SINE MIR -1 261 186 438 225 70 2 chr15 39600814 39601083 -46094671 + MER46C DNA MER2_type 2 334 -4 189 0 0 0 chr15 39602611 39602632 -46093122 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1669 145 72 4 chr15 39602636 39602898 -46092856 - AluSg SINE Alu -30 280 1 394 254 45 27 chr15 39603536 39603698 -46092056 + MIR SINE MIR 20 184 -62 34 89 0 0 chr15 39603917 39604007 -46091747 + AT_rich Low_complexity Low_complexity 1 90 0 934 204 0 0 chr15 39605282 39605463 -46090291 - MLT1B LTR MaLR 0 390 210 6316 150 22 48 chr15 39605530 39607413 -46088341 - L1PB1 LINE L1 -1 6150 4276 494 127 25 0 chr15 39607413 39607492 -46088262 - AluSg/x SINE Alu -17 292 212 6316 150 22 48 chr15 39607492 39608070 -46087684 - L1PB1 LINE L1 -1875 4276 3684 243 125 0 0 chr15 39608070 39608110 -46087644 + (T)n Simple_repeat Simple_repeat 1 40 0 853 187 0 145 chr15 39608120 39608209 -46087545 - L1PB1 LINE L1 -2394 3752 3652 2090 120 30 0 chr15 39608209 39608508 -46087246 - AluSc SINE Alu -1 308 1 853 187 0 145 chr15 39608508 39608750 -46087004 - L1PB1 LINE L1 -2494 3652 3469 592 197 15 36 chr15 39608757 39608894 -46086860 - MLT1B LTR MaLR -240 134 1 203 333 44 11 chr15 39609299 39609389 -46086365 + L3 LINE CR1 1251 1343 -234 216 0 0 0 chr15 39610017 39610041 -46085713 + (T)n Simple_repeat Simple_repeat 1 24 0 974 156 0 6 chr15 39610492 39610671 -46085083 + CT-rich Low_complexity Low_complexity 3 180 0 503 228 18 12 chr15 39610633 39610804 -46084950 + C-rich Low_complexity Low_complexity 5 176 0 * 1462 201 24 41 chr15 39610816 39611110 -46084644 - AluJo SINE Alu -23 289 1 24 0 0 0 chr15 39611110 39611134 -46084620 + AT_rich Low_complexity Low_complexity 1 24 0 1892 156 7 7 chr15 39611134 39611423 -46084331 + AluJb SINE Alu 1 289 -23 2212 103 3 7 chr15 39611423 39611723 -46084031 - AluSq SINE Alu -14 299 1 386 287 108 30 chr15 39613521 39613688 -46082066 - MIR SINE MIR -30 232 53 417 263 25 69 chr15 39613889 39614049 -46081705 - MER5B DNA MER1_type -25 153 1 868 224 80 12 chr15 39614896 39615224 -46080530 - L1MEc LINE L1 -1488 4727 4373 252 301 35 7 chr15 39615220 39615363 -46080391 - L1MEc LINE L1 -2770 3445 3299 * 2909 293 77 29 chr15 39615358 39615745 -46080009 - L1MEc LINE L1 -4579 1817 1450 1367 236 37 55 chr15 39615745 39616148 -46079606 + MSTD LTR MaLR 1 396 0 2909 293 77 29 chr15 39616148 39616848 -46078906 - L1MEc LINE L1 -4946 1450 785 1979 147 10 0 chr15 39616848 39617147 -46078607 - AluSx SINE Alu -10 302 1 2909 293 77 29 chr15 39617147 39617762 -46077992 - L1MEc LINE L1 -5611 785 32 180 326 54 0 chr15 39618073 39618165 -46077589 + MIR SINE MIR 110 206 -56 971 123 0 0 chr15 39618171 39618309 -46077445 - FRAM SINE Alu -12 164 27 21 57 0 0 chr15 39619379 39619414 -46076340 + AT_rich Low_complexity Low_complexity 1 35 0 319 358 75 0 chr15 39619684 39619818 -46075936 - L2 LINE L2 -7 3265 3122 7945 232 72 59 chr15 39620099 39620269 -46075485 - L1ME1 LINE L1 -92 6143 5977 2213 105 0 7 chr15 39620269 39620573 -46075181 - AluSx SINE Alu -8 304 3 7945 232 72 59 chr15 39620573 39620795 -46074959 - L1ME1 LINE L1 -258 5977 5759 2312 110 3 0 chr15 39620795 39621105 -46074649 - AluSp SINE Alu -2 311 1 7945 232 72 59 chr15 39621105 39621710 -46074044 - L1ME1 LINE L1 -476 5759 5163 1641 167 28 21 chr15 39621710 39621997 -46073757 - AluJb SINE Alu -23 289 1 7945 232 72 59 chr15 39621997 39624315 -46071439 - L1ME1 LINE L1 -1072 5163 2876 6679 62 24 1 chr15 39624315 39625614 -46070140 + L1PA6 LINE L1 4837 6154 0 7945 232 72 59 chr15 39625614 39626954 -46068800 - L1ME1 LINE L1 -3359 2876 1554 1214 218 156 34 chr15 39626954 39627307 -46068447 + MSTD LTR MaLR 1 396 0 7945 232 72 59 chr15 39627307 39628512 -46067242 - L1ME1 LINE L1 -4681 1554 37 661 206 97 7 chr15 39628517 39628672 -46067082 - MER3 DNA MER1_type -85 124 3 186 43 0 0 chr15 39628706 39628729 -46067025 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 333 0 0 0 chr15 39628728 39628765 -46066989 + (TG)n Simple_repeat Simple_repeat 1 37 0 726 146 0 66 chr15 39628782 39628919 -46066835 + FLAM_C SINE Alu 4 131 -2 320 207 61 37 chr15 39629162 39629244 -46066510 + L2 LINE L2 3218 3301 -12 479 79 53 0 chr15 39630021 39630097 -46065657 + MADE1 DNA Mariner 1 80 0 2183 127 0 0 chr15 39630480 39630779 -46064975 - AluSx SINE Alu -13 299 1 2180 80 49 0 chr15 39630907 39631195 -46064559 + AluSq SINE Alu 1 302 -11 468 188 59 155 chr15 39631683 39631910 -46063844 - MER112 DNA MER1_type -13 247 49 2402 27 41 10 chr15 39631910 39632205 -46063549 + AluY SINE Alu 1 304 -7 468 188 59 155 chr15 39632205 39632248 -46063506 - MER112 DNA MER1_type -211 49 3 270 265 12 36 chr15 39632688 39632771 -46062983 + MIR3 SINE MIR 99 179 -29 198 0 0 0 chr15 39633077 39633099 -46062655 + (T)n Simple_repeat Simple_repeat 1 22 0 638 265 88 0 chr15 39635024 39635205 -46060549 - MER105 DNA DNA -4 200 4 279 62 125 0 chr15 39636263 39636311 -46059443 + MADE1 DNA Mariner 1 54 -26 442 19 0 0 chr15 39636386 39636439 -46059315 + MADE1 DNA Mariner 28 80 0 2049 110 4 0 chr15 39636890 39637171 -46058583 + AluSx SINE Alu 1 282 -30 1992 121 0 4 chr15 39637999 39638305 -46057449 - AluSx SINE Alu 0 307 3 753 199 115 0 chr15 39638415 39638571 -46057183 - FAM SINE Alu -1 174 1 547 236 341 56 chr15 39638660 39638724 -46057030 - L2 LINE L2 -531 2783 2738 4143 73 42 2 chr15 39638724 39638911 -46056843 - MER4A LTR ERV1 -1 599 421 180 0 0 0 chr15 39638911 39638931 -46056823 + (GTTTG)n Simple_repeat Simple_repeat 4 23 0 4143 73 42 2 chr15 39638931 39639319 -46056435 - MER4A LTR ERV1 -179 421 1 547 236 341 56 chr15 39639319 39639586 -46056168 - L2 LINE L2 -576 2738 2548 853 229 0 0 chr15 39639586 39639752 -46056002 - FRAM SINE Alu 0 166 1 547 236 341 56 chr15 39639752 39639990 -46055764 - L2 LINE L2 -766 2548 2050 2402 92 0 0 chr15 39640250 39640553 -46055201 + AluSg SINE Alu 1 303 -7 1739 159 23 17 chr15 39640818 39641119 -46054635 + AluJo SINE Alu 1 303 -9 1877 136 9 28 chr15 39641192 39641509 -46054245 + AluSx SINE Alu 1 311 -1 750 93 0 0 chr15 39641552 39641660 -46054094 - MER4B LTR ERV1 -499 111 4 662 157 71 79 chr15 39641662 39641802 -46053952 - Tigger7 DNA MER2_type -503 202 64 376 232 0 0 chr15 39641806 39641875 -46053879 + Tigger7 DNA MER2_type 2 70 -269 1205 140 14 79 chr15 39641875 39642154 -46053600 + L1MB8 LINE L1 5918 6178 0 3963 220 96 46 chr15 39642225 39644517 -46051237 + L1MC4 LINE L1 5520 8041 -1 327 332 47 47 chr15 39644633 39644844 -46050910 - MIR SINE MIR -32 230 20 197 33 33 0 chr15 39645684 39645714 -46050040 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2075 221 31 91 chr15 39645829 39646272 -46049482 + L1MC5 LINE L1 6692 7065 -896 2097 83 0 24 chr15 39646272 39646560 -46049194 - AluY SINE Alu -2 309 29 2075 221 31 91 chr15 39646560 39646932 -46048822 + L1MC5 LINE L1 7065 7458 -503 904 128 70 13 chr15 39646972 39647128 -46048626 - MER3 DNA MER1_type -86 123 6 538 217 26 9 chr15 39647132 39647247 -46048507 - MLT1B LTR MaLR -3 387 271 1411 174 23 12 chr15 39647302 39647561 -46048193 + AluJo SINE Alu 1 262 -50 228 67 0 0 chr15 39647597 39647627 -46048127 + (TG)n Simple_repeat Simple_repeat 1 30 0 811 245 27 5 chr15 39647858 39648042 -46047712 - MER5A DNA MER1_type -1 188 1 25 31 0 0 chr15 39648045 39648077 -46047677 + AT_rich Low_complexity Low_complexity 1 32 0 369 109 178 59 chr15 39648947 39649048 -46046706 + MER3 DNA MER1_type 96 208 -1 22 0 0 0 chr15 39649428 39649450 -46046304 + AT_rich Low_complexity Low_complexity 1 22 0 761 178 29 58 chr15 39650128 39650302 -46045452 + AluJo SINE Alu 1 169 -143 912 225 83 77 chr15 39650319 39650644 -46045110 + MLT1A1 LTR MaLR 39 365 0 910 240 47 78 chr15 39651227 39651636 -46044118 - MSTD LTR MaLR 0 396 1 2189 151 91 7 chr15 39651644 39652049 -46043705 - Tigger2 DNA MER2_type 0 2718 2280 412 131 33 0 chr15 39652057 39652118 -46043636 - Tigger2 DNA MER2_type -2655 63 1 318 292 42 10 chr15 39652156 39652252 -46043502 - L2 LINE L2 0 3272 3174 231 114 0 0 chr15 39653365 39653400 -46042354 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 348 175 175 0 chr15 39653680 39653760 -46041994 - MER46C DNA MER2_type -221 117 24 1813 168 7 10 chr15 39653770 39654080 -46041674 + AluJo SINE Alu 1 309 -3 396 0 0 0 chr15 39654301 39654345 -46041409 + (TG)n Simple_repeat Simple_repeat 2 45 0 2173 72 0 36 chr15 39657160 39657466 -46038288 - AluSq SINE Alu -18 295 1 1564 145 105 34 chr15 39658232 39658556 -46037198 - MER7A DNA MER2_type -1 345 1 244 194 139 69 chr15 39659077 39659221 -46036533 - L1ME4a LINE L1 -61 6060 5907 499 144 21 10 chr15 39659319 39659416 -46036338 + MER58 DNA MER1_type 2322 2419 -1 330 67 0 0 chr15 39660280 39660325 -46035429 + (TG)n Simple_repeat Simple_repeat 1 45 0 1810 177 0 10 chr15 39660837 39661148 -46034606 - AluJb SINE Alu -4 308 1 1394 210 3 53 chr15 39662026 39662345 -46033409 + AluJb SINE Alu 2 304 -8 2714 218 70 86 chr15 39663718 39665050 -46030704 + L1MDb LINE L1 782 2048 -4358 258 270 22 25 chr15 39665076 39665209 -46030545 + L1MDb LINE L1 2135 2273 -4133 5103 182 29 24 chr15 39665211 39666346 -46029408 - L1PA16 LINE L1 -1363 4783 3643 * 5285 166 36 5 chr15 39666331 39667689 -46028065 + L1PA16 LINE L1 4766 6159 -7 1626 217 93 29 chr15 39667683 39668229 -46027525 + L1MDb LINE L1 2285 2875 -3531 * 2155 130 0 3 chr15 39668229 39668530 -46027224 + AluSx SINE Alu 3 302 -10 1626 217 93 29 chr15 39668530 39668631 -46027123 + L1MDb LINE L1 2875 2968 -3438 1266 243 30 3 chr15 39668635 39668968 -46026786 + L1MDb LINE L1 2788 3129 -3277 2505 58 0 0 chr15 39668969 39669262 -46026492 + AluY SINE Alu 1 293 -18 709 249 65 19 chr15 39669310 39669635 -46026119 + L1MDb LINE L1 3397 3736 -2670 1943 146 0 0 chr15 39669644 39669938 -46025816 + AluSx SINE Alu 1 294 -18 549 127 0 0 chr15 39669974 39670053 -46025701 - AluJ/FLAM SINE Alu -233 79 1 746 219 7 7 chr15 39670240 39670391 -46025363 - FRAM SINE Alu -15 151 1 22 35 0 0 chr15 39670401 39670430 -46025324 + AT_rich Low_complexity Low_complexity 1 29 0 935 209 125 6 chr15 39670440 39670751 -46025003 + L1M4 LINE L1 2871 3218 -2928 34 0 0 0 chr15 39671031 39671065 -46024689 + AT_rich Low_complexity Low_complexity 1 34 0 2028 101 7 11 chr15 39671065 39671341 -46024413 - AluSx SINE Alu -11 301 27 323 250 254 11 chr15 39671428 39671708 -46024046 - L1MC4 LINE L1 -197 7845 7498 2693 204 88 3 chr15 39673235 39673837 -46021917 + MER82 DNA MER2_type 1 653 0 221 341 8 16 chr15 39674247 39674278 -46021476 - L3 LINE CR1 -736 841 811 1955 120 3 58 chr15 39674278 39674457 -46021297 - AluSq SINE Alu -5 308 154 2335 89 0 3 chr15 39674457 39674761 -46020993 - AluY SINE Alu -8 303 1 1955 120 3 58 chr15 39674761 39674907 -46020847 - AluSq SINE Alu -159 154 1 221 341 8 16 chr15 39674907 39674998 -46020756 - L3 LINE CR1 -766 811 720 288 204 150 18 chr15 39675259 39675372 -46020382 + MER103 DNA DNA 5 132 -34 284 330 20 0 chr15 39675492 39675592 -46020162 - L3 LINE CR1 -225 1352 1251 1839 164 0 10 chr15 39675616 39675920 -46019834 - AluJo SINE Alu -9 303 3 1612 93 0 0 chr15 39676364 39676569 -46019185 - AluSq SINE Alu -20 293 89 571 115 0 0 chr15 39676569 39676647 -46019107 + AluS SINE Alu 7 84 -228 1771 166 7 3 chr15 39676687 39676971 -46018783 + AluSx SINE Alu 1 285 -27 566 225 42 0 chr15 39677575 39677695 -46018059 + MIR3 SINE MIR 61 185 -23 1002 108 0 32 chr15 39677811 39677996 -46017758 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 234 105 0 0 chr15 39677998 39678036 -46017718 + (TC)n Simple_repeat Simple_repeat 1 38 0 1345 168 7 69 chr15 39678036 39678327 -46017427 - AluJo SINE Alu -39 273 1 766 186 145 0 chr15 39678428 39678573 -46017181 - FRAM SINE Alu -12 164 1 1613 189 3 10 chr15 39679162 39679463 -46016291 - AluJb SINE Alu -13 299 1 465 143 0 0 chr15 39680338 39680408 -46015346 + AluJ/FLAM SINE Alu 21 90 -222 25 51 0 0 chr15 39680471 39680510 -46015244 + AT_rich Low_complexity Low_complexity 1 39 0 2116 166 47 10 chr15 39681195 39681604 -46014150 + MSTB LTR MaLR 1 424 -2 687 269 48 0 chr15 39682565 39682732 -46013022 - LTR16A LTR ERVL -5 445 271 281 200 0 0 chr15 39682767 39682812 -46012942 - LTR16A LTR ERVL -265 185 141 347 203 0 29 chr15 39683241 39683310 -46012444 - L2 LINE L2 -1 3312 3246 1837 165 0 33 chr15 39683370 39683673 -46012081 - AluSx SINE Alu -19 293 1 695 216 32 16 chr15 39683814 39683999 -46011755 - Charlie2 DNA MER1_type -64 2798 2611 3058 246 72 32 chr15 39684029 39684916 -46010838 + HERVL40 LTR ERVL 3517 4446 -1084 465 19 0 0 chr15 39684916 39684970 -46010784 + (TTA)n Simple_repeat Simple_repeat 1 54 0 3058 246 72 32 chr15 39684970 39685030 -46010724 + HERVL40 LTR ERVL 4446 4502 -1028 1811 168 7 0 chr15 39685062 39685342 -46010412 + AluSx SINE Alu 3 284 -28 232 183 0 67 chr15 39685602 39685662 -46010092 + LTR40a LTR ERVL 457 512 -7 256 309 33 88 chr15 39685731 39685912 -46009842 + HERVL40 LTR ERVL 2502 2672 -365 519 363 7 29 chr15 39686072 39686485 -46009269 + MER89-int LTR ERV1 6081 6484 -317 * 1219 256 10 3 chr15 39686377 39686723 -46009031 + HERVL40 LTR ERVL 2785 5530 0 2285 214 42 8 chr15 39686723 39687218 -46008536 + LTR40a LTR ERVL 1 512 -7 853 219 42 14 chr15 39687381 39687596 -46008158 + MER58A DNA MER1_type 4 224 0 192 77 0 0 chr15 39687770 39687796 -46007958 + (T)n Simple_repeat Simple_repeat 1 26 0 2265 91 106 53 chr15 39688150 39688506 -46007248 - LTR56 LTR ERV1 0 445 62 1547 170 78 0 chr15 39688506 39688789 -46006965 - AluJb SINE Alu -3 309 5 2265 91 106 53 chr15 39688789 39688849 -46006905 - LTR56 LTR ERV1 -383 62 7 2220 185 56 116 chr15 39689380 39690154 -46005600 - LTR8A LTR ERV1 0 727 1 546 68 0 0 chr15 39691426 39691499 -46004255 + Alu SINE Alu 4 76 -235 1165 179 51 30 chr15 39691742 39691976 -46003778 - MER8 DNA MER2_type 0 239 1 6070 53 1 8 chr15 39692095 39692107 -46003647 - L1PA6 LINE L1 -3 6151 6140 243 0 0 0 chr15 39692107 39692134 -46003620 + (TATG)n Simple_repeat Simple_repeat 2 28 0 6070 53 1 8 chr15 39692134 39692898 -46002856 - L1PA6 LINE L1 -14 6140 5380 333 296 72 8 chr15 39693309 39693434 -46002320 - MIR SINE MIR -13 249 117 25 0 0 0 chr15 39693615 39693640 -46002114 + AT_rich Low_complexity Low_complexity 1 25 0 1927 184 18 6 chr15 39693837 39694163 -46001591 - MER1B DNA MER1_type -9 330 1 1936 145 30 0 chr15 39694271 39694568 -46001186 - AluSx SINE Alu -6 306 1 1880 131 3 20 chr15 39695136 39695434 -46000320 - AluSx SINE Alu -19 293 1 710 298 144 26 chr15 39695810 39696135 -45999619 + L3 LINE CR1 936 1344 -233 792 200 122 34 chr15 39696135 39696340 -45999414 - MER58A DNA MER1_type 0 224 2 710 298 144 26 chr15 39696340 39696521 -45999233 + L3 LINE CR1 1344 1502 -75 1391 211 53 30 chr15 39696809 39697146 -45998608 + MER2 DNA MER2_type 1 345 0 2151 239 114 42 chr15 39697146 39697728 -45998026 - L1ME2 LINE L1 -23 6141 5602 1997 133 42 36 chr15 39697728 39698016 -45997738 + THE1B LTR MaLR 1 293 -71 2045 121 24 13 chr15 39698016 39698314 -45997440 - AluSx SINE Alu -11 301 1 1997 133 42 36 chr15 39698314 39698385 -45997369 + THE1B LTR MaLR 293 362 -2 2151 239 114 42 chr15 39698385 39698855 -45996899 - L1ME2 LINE L1 -562 5602 5167 1837 139 10 7 chr15 39698855 39699149 -45996605 - AluSx SINE Alu -14 298 4 2151 239 114 42 chr15 39699149 39699534 -45996220 - L1ME2 LINE L1 -997 5167 4583 1653 230 49 37 chr15 39699646 39700181 -45995573 - L1ME1 LINE L1 -18 6148 5608 210 143 0 0 chr15 39700198 39700233 -45995521 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 195 129 0 0 chr15 39700275 39700306 -45995448 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1316 181 69 43 chr15 39700308 39700585 -45995169 - AluJo SINE Alu -28 284 1 23 0 0 0 chr15 39700585 39700608 -45995146 + AT_rich Low_complexity Low_complexity 1 23 0 1176 222 72 71 chr15 39702322 39702494 -45993260 + L1MDb LINE L1 782 952 -5454 1692 145 0 56 chr15 39702494 39702798 -45992956 - AluJb SINE Alu -25 287 1 1176 222 72 71 chr15 39702798 39703370 -45992384 + L1MDb LINE L1 952 1456 -4950 21 0 0 0 chr15 39703397 39703418 -45992336 + AT_rich Low_complexity Low_complexity 1 21 0 320 340 60 32 chr15 39704705 39704890 -45990864 - MIR SINE MIR -71 191 2 331 279 95 51 chr15 39705117 39705275 -45990479 - MIR SINE MIR -46 216 52 1818 159 3 17 chr15 39705325 39705621 -45990133 - AluJo SINE Alu -20 292 1 1358 168 171 17 chr15 39705854 39706146 -45989608 + MER1B DNA MER1_type 1 337 0 1769 169 81 35 chr15 39706406 39706852 -45988902 - L1M4 LINE L1 -523 5661 5184 1906 104 31 4 chr15 39707223 39707482 -45988272 + AluSx SINE Alu 4 269 -43 246 32 0 0 chr15 39707483 39707514 -45988240 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 1479 171 62 4 chr15 39708214 39708489 -45987265 + AluJo SINE Alu 4 294 -18 219 69 0 0 chr15 39708508 39708537 -45987217 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 21 0 0 0 chr15 39712073 39712094 -45983660 + AT_rich Low_complexity Low_complexity 1 21 0 647 78 10 29 chr15 39712161 39712264 -45983490 - AluSp/q SINE Alu -3 310 210 1526 203 4 4 chr15 39712487 39712768 -45982986 - AluJo SINE Alu -31 281 1 3586 161 44 87 chr15 39712816 39713677 -45982077 - L1MB1 LINE L1 0 6168 5345 1253 89 13 0 chr15 39913780 39913937 -45781817 + AluSq SINE Alu 89 247 -66 406 256 54 18 chr15 39913939 39914107 -45781647 - MER104 DNA MER2_type -4 176 3 243 286 18 62 chr15 39914269 39914381 -45781373 - MIR SINE MIR -76 186 80 336 282 67 67 chr15 39915791 39915829 -45779925 + MIR SINE MIR 66 103 -159 1695 165 16 30 chr15 39915829 39916132 -45779622 - AluJo SINE Alu -5 307 9 336 282 67 67 chr15 39916132 39916242 -45779512 + MIR SINE MIR 102 214 -48 205 375 39 10 chr15 39916301 39916405 -45779349 + MIR SINE MIR 108 214 -48 636 153 81 18 chr15 39918088 39918199 -45777555 - FLAM_C SINE Alu -15 118 1 243 146 0 0 chr15 39918850 39918891 -45776863 + (TG)n Simple_repeat Simple_repeat 2 42 0 1095 149 0 12 chr15 39919104 39919272 -45776482 + FRAM SINE Alu 1 165 -11 1924 124 50 14 chr15 39919538 39919821 -45775933 + AluSx SINE Alu 1 293 -19 225 225 14 42 chr15 39920723 39920794 -45774960 + MER46A DNA MER2_type 101 169 -67 675 301 27 11 chr15 39920804 39920990 -45774764 - MIR SINE MIR -29 233 45 225 0 0 0 chr15 39921387 39921412 -45774342 + (TAAAG)n Simple_repeat Simple_repeat 1 25 0 210 22 0 87 chr15 39922459 39922505 -45773249 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 197 222 0 37 chr15 39923001 39923055 -45772699 + MIR SINE MIR 211 262 0 322 308 60 23 chr15 39923195 39923328 -45772426 + MIR SINE MIR 47 184 -78 1778 190 85 3 chr15 39923595 39923958 -45771796 - MLT2C1 LTR ERVL 0 397 5 2143 110 0 7 chr15 39924359 39924658 -45771096 + AluSg SINE Alu 1 297 -13 388 54 89 0 chr15 39925412 39925468 -45770286 - L1PA7 LINE L1 0 6154 6094 214 268 41 62 chr15 39926952 39927049 -45768705 - MIR SINE MIR -81 181 87 305 281 85 89 chr15 39927821 39928102 -45767652 - L1M2 LINE L1 -5716 1133 854 1819 149 35 0 chr15 39928529 39928818 -45766936 + AluJo SINE Alu 1 299 -13 2204 110 0 0 chr15 39929237 39929554 -45766200 + AluSx SINE Alu 2 318 0 209 306 116 74 chr15 39929779 39929900 -45765854 + L2 LINE L2 3147 3272 0 2072 122 11 45 chr15 39932553 39932929 -45762825 - L1MA2 LINE L1 0 6304 5942 393 274 103 0 chr15 39933022 39933139 -45762615 + MLT1J LTR MaLR 92 220 -291 2211 123 3 0 chr15 39933640 39933950 -45761804 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr15 39933987 39934008 -45761746 + AT_rich Low_complexity Low_complexity 1 21 0 2133 170 52 44 chr15 39934248 39934743 -45761011 - L1MB8 LINE L1 0 6178 5680 1955 112 54 0 chr15 39934788 39935064 -45760690 + AluSx SINE Alu 6 296 -16 454 300 158 34 chr15 39935067 39935596 -45760158 - L1 LINE L1 -1527 4619 4026 2050 135 3 7 chr15 39935679 39935975 -45759779 + AluSx SINE Alu 1 295 -17 2495 63 0 0 chr15 39935975 39936274 -45759480 + AluY SINE Alu 1 299 -12 21 71 0 0 chr15 39936274 39936316 -45759438 + AT_rich Low_complexity Low_complexity 1 42 0 1268 133 15 15 chr15 39936496 39936699 -45759055 - THE1B LTR MaLR -161 203 1 1621 181 64 39 chr15 39936952 39937145 -45758609 - MLT1A2 LTR MaLR -5 369 161 2088 104 30 3 chr15 39937145 39937443 -45758311 - AluSc SINE Alu -3 306 1 1621 181 64 39 chr15 39937443 39937609 -45758145 - MLT1A2 LTR MaLR -213 161 1 665 136 0 18 chr15 39938741 39938851 -45756903 + FLAM_A SINE Alu 30 137 -5 2492 76 0 0 chr15 39938881 39939185 -45756569 + AluSc SINE Alu 1 304 -5 213 132 0 0 chr15 39940789 39940827 -45754927 + (TCC)n Simple_repeat Simple_repeat 3 40 0 2260 105 3 13 chr15 39940827 39941142 -45754612 - AluSx SINE Alu 0 312 1 468 359 47 35 chr15 39941146 39941652 -45754102 + L2 LINE L2 2044 2558 -756 3747 127 19 11 chr15 39941652 39942220 -45753534 - L1PA16 LINE L1 0 6166 5594 468 359 47 35 chr15 39942220 39942251 -45753503 + L2 LINE L2 2558 2587 -727 231 256 45 126 chr15 39942433 39942656 -45753098 + L2 LINE L2 2886 3090 -182 199 137 59 78 chr15 39942833 39942884 -45752870 - MIR SINE MIR -2 260 211 1559 154 12 15 chr15 39942976 39943235 -45752519 - AluJo SINE Alu -2 310 53 2325 86 0 20 chr15 39943248 39943550 -45752204 - AluSg SINE Alu -12 298 3 2197 135 0 6 chr15 39943561 39943873 -45751881 - AluSx SINE Alu -2 310 1 1494 187 39 16 chr15 39943874 39944184 -45751570 - L1MB7 LINE L1 -8 6176 5860 570 193 0 20 chr15 39944187 39944337 -45751417 + CT-rich Low_complexity Low_complexity 4 150 0 920 175 7 26 chr15 39944345 39944499 -45751255 - FRAM SINE Alu -15 151 1 844 207 32 65 chr15 39944502 39944748 -45751006 - L1MD1 LINE L1 -369 5873 5636 1515 250 170 39 chr15 39944799 39945516 -45750238 + L1M4 LINE L1 65 875 -5667 1033 154 6 34 chr15 39945561 39945689 -45750065 + MER2 DNA MER2_type 3 126 -219 1781 185 3 10 chr15 39945689 39945991 -45749763 - AluJb SINE Alu -12 300 1 1033 154 6 34 chr15 39945991 39946033 -45749721 + MER2 DNA MER2_type 126 168 -177 2120 150 7 78 chr15 39946033 39946298 -45749456 + Tigger2 DNA MER2_type 1 225 -2493 1822 108 10 61 chr15 39946298 39946593 -45749161 + AluSx SINE Alu 11 290 -22 2120 150 7 78 chr15 39946593 39946760 -45748994 + Tigger2 DNA MER2_type 225 402 -2316 5718 267 37 47 chr15 39946763 39947746 -45748008 + L1M4 LINE L1 2396 3387 -3257 2431 75 0 0 chr15 39947746 39948038 -45747716 - AluY SINE Alu -19 292 1 5718 267 37 47 chr15 39948038 39948842 -45746912 + L1M4 LINE L1 3387 4197 -2447 189 0 0 0 chr15 39948842 39948863 -45746891 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 5718 267 37 47 chr15 39948863 39949267 -45746487 + L1M4 LINE L1 4197 4567 -2077 2143 97 28 7 chr15 39949267 39949556 -45746198 + AluSg1 SINE Alu 5 299 -10 5718 267 37 47 chr15 39949556 39949655 -45746099 + L1M4 LINE L1 4567 4665 -1979 309 290 21 11 chr15 39949715 39949808 -45745946 + MIR SINE MIR 58 151 -57 202 331 130 43 chr15 39951161 39951415 -45744339 - L2 LINE L2 -131 3141 2866 331 308 21 56 chr15 39951458 39951601 -45744153 + L2 LINE L2 3132 3269 -3 190 246 123 0 chr15 39952388 39952445 -45743309 + MIR SINE MIR 117 180 -82 3068 167 22 13 chr15 39952498 39952994 -45742760 - L1MB3 LINE L1 -5 6178 5675 2352 110 0 0 chr15 39952994 39953304 -45742450 - AluSg SINE Alu 0 310 1 3068 167 22 13 chr15 39953304 39953352 -45742402 - L1MB3 LINE L1 -508 5675 5629 625 331 70 7 chr15 39954117 39954419 -45741335 - L3 LINE CR1 -275 1302 982 2307 144 59 30 chr15 39954437 39954954 -45740800 + MLT2A2 LTR ERVL 1 554 0 2170 119 7 0 chr15 39955090 39955392 -45740362 - AluSq SINE Alu -9 304 1 272 192 80 113 chr15 39955477 39955628 -45740126 - MIR SINE MIR 0 262 117 350 362 172 13 chr15 39955699 39956229 -45739525 - L3 LINE CR1 -889 688 75 2486 69 0 10 chr15 39956548 39956852 -45738902 - AluY SINE Alu -2 309 9 333 299 37 0 chr15 39957694 39957801 -45737953 + MIR3 SINE MIR 53 163 -45 466 259 30 44 chr15 39957961 39958096 -45737658 - MIR SINE MIR -121 141 9 430 296 175 5 chr15 39958144 39958333 -45737421 - MIR SINE MIR -16 246 26 210 91 0 0 chr15 39959293 39959326 -45736428 + (GA)n Simple_repeat Simple_repeat 1 33 0 189 0 0 0 chr15 39961362 39961383 -45734371 + (T)n Simple_repeat Simple_repeat 1 21 0 423 0 0 0 chr15 39962956 39963003 -45732751 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 311 283 30 10 chr15 39963354 39963453 -45732301 - MER5B DNA MER1_type -6 172 72 266 269 179 37 chr15 39963547 39963681 -45732073 + MIR SINE MIR 2 154 -108 1682 171 20 7 chr15 39964032 39964324 -45731430 - AluJo SINE Alu -11 301 6 264 252 136 4 chr15 39966252 39966380 -45729374 - MIR3 SINE MIR -28 180 29 2099 129 0 10 chr15 39966457 39966768 -45728986 + AluSg SINE Alu 1 308 -2 30 27 0 0 chr15 39967268 39967305 -45728449 + AT_rich Low_complexity Low_complexity 1 37 0 379 325 136 18 chr15 39967594 39967985 -45727769 + L2 LINE L2 1860 2296 -1018 334 295 72 30 chr15 39967987 39968153 -45727601 + L2 LINE L2 2467 2639 -675 319 350 58 25 chr15 39968165 39968408 -45727346 + L2 LINE L2 2288 2538 -776 239 280 68 68 chr15 39968445 39968563 -45727191 + L2 LINE L2 3141 3258 -14 230 125 0 21 chr15 39968588 39968636 -45727118 - LTR66 LTR ERVL -159 451 405 229 326 21 0 chr15 39968636 39968731 -45727023 + (CATATA)n Simple_repeat Simple_repeat 1 97 0 2498 188 47 26 chr15 39969511 39969940 -45725814 + MLT1D LTR MaLR 1 444 -61 2441 53 3 0 chr15 39969940 39970243 -45725511 + AluY SINE Alu 1 304 0 2498 188 47 26 chr15 39970243 39970307 -45725447 + MLT1D LTR MaLR 444 505 0 600 281 46 40 chr15 39970440 39970691 -45725063 - MIR SINE MIR 0 262 13 395 235 70 0 chr15 39970778 39970893 -45724861 + MLT1D LTR MaLR 1 123 -382 182 306 0 0 chr15 39971159 39971195 -45724559 + L2 LINE L2 3147 3182 -90 230 361 120 0 chr15 39972857 39972990 -45722764 - MIR SINE MIR -62 200 52 790 222 57 0 chr15 39973156 39973350 -45722404 + MER3 DNA MER1_type 1 205 -4 251 397 33 0 chr15 39973367 39973488 -45722266 - L3 LINE CR1 -20 1557 1433 189 337 76 11 chr15 39974273 39974365 -45721389 + L3 LINE CR1 444 541 -1036 339 289 0 33 chr15 39975768 39975858 -45719896 + MIR SINE MIR 15 101 -161 8982 209 73 30 chr15 39976545 39980240 -45715514 + L1MD1 LINE L1 2407 6242 0 21 0 0 0 chr15 39980240 39980261 -45715493 + AT_rich Low_complexity Low_complexity 1 21 0 402 266 112 18 chr15 39981959 39982128 -45713626 - MIR3 SINE MIR -1 207 23 973 104 11 27 chr15 39982403 39982516 -45713238 + (TTTC)n Simple_repeat Simple_repeat 1 291 0 973 104 11 27 chr15 39982516 39982699 -45713055 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 23 0 0 0 chr15 39982912 39982935 -45712819 + AT_rich Low_complexity Low_complexity 1 23 0 218 245 38 19 chr15 39982935 39982988 -45712766 + MER5B DNA MER1_type 54 107 -71 650 217 130 0 chr15 39982998 39983157 -45712597 + MER5A DNA MER1_type 1 183 -6 27 0 0 0 chr15 39983390 39983417 -45712337 + AT_rich Low_complexity Low_complexity 1 27 0 1842 210 81 78 chr15 39985009 39985550 -45710204 + LTR48B LTR ERV1 1 546 -98 2197 147 132 8 chr15 39985550 39985930 -45709824 + MSTA LTR MaLR 2 428 0 1842 210 81 78 chr15 39985930 39986030 -45709724 + LTR48B LTR ERV1 546 644 0 680 237 96 0 chr15 39986030 39986207 -45709547 - L1ME3A LINE L1 -59 6111 5918 239 0 32 0 chr15 39987015 39987046 -45708708 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr15 39987064 39987093 -45708661 + AT_rich Low_complexity Low_complexity 1 29 0 1677 174 25 11 chr15 39987093 39987375 -45708379 - AluJb SINE Alu -26 286 1 2285 102 0 0 chr15 39988446 39988740 -45707014 + AluSq SINE Alu 1 294 -19 924 102 8 0 chr15 39989519 39989663 -45706091 - FLAM_C SINE Alu 0 145 1 233 325 94 17 chr15 39989848 39989965 -45705789 + L2 LINE L2 2921 3046 -226 2209 101 16 10 chr15 39990069 39990375 -45705379 - AluSx SINE Alu -4 308 1 22 35 0 0 chr15 39990405 39990434 -45705320 + AT_rich Low_complexity Low_complexity 1 29 0 2106 200 58 40 chr15 39990535 39991031 -45704723 - MLT1D LTR MaLR 0 505 1 404 263 78 60 chr15 39991087 39991099 -45704655 - L1MC4a LINE L1 -155 5966 5956 1486 158 3 89 chr15 39991099 39991415 -45704339 - AluJo SINE Alu -23 289 1 404 263 78 60 chr15 39991415 39991619 -45704135 - L1MC4a LINE L1 -165 5956 5744 2107 90 10 14 chr15 39991639 39991928 -45703826 - AluSq SINE Alu -13 300 13 185 65 32 0 chr15 39992252 39992283 -45703471 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2358 91 3 0 chr15 39992428 39992724 -45703030 - AluSx SINE Alu -15 297 1 4415 173 46 8 chr15 39993090 39994092 -45701662 + L1MB7 LINE L1 5140 6184 0 304 248 41 16 chr15 39995128 39995249 -45700505 + L2 LINE L2 2816 2939 -375 979 176 11 11 chr15 39995431 39995617 -45700137 - MLT1D LTR MaLR 0 505 320 2260 181 99 36 chr15 39995617 39996204 -45699550 - LTR48B LTR ERV1 0 644 21 1497 160 48 65 chr15 39996214 39996551 -45699203 - MLT1D LTR MaLR -174 331 1 2339 117 3 0 chr15 39997489 39997798 -45697956 + AluSg SINE Alu 1 310 0 1561 214 116 16 chr15 39998021 39998461 -45697293 + LTR48B LTR ERV1 1 484 -160 273 211 66 26 chr15 39998474 39998550 -45697204 + MIR3 SINE MIR 125 203 -5 235 308 0 26 chr15 39999013 39999130 -45696624 + L1ME LINE L1 5799 5912 -209 259 284 62 86 chr15 39999298 39999460 -45696294 - L2 LINE L2 -4 3268 3111 489 335 51 19 chr15 39999691 40000061 -45695693 - L2 LINE L2 -1039 2275 1894 2015 152 3 3 chr15 40000545 40000855 -45694899 - AluJo SINE Alu -2 310 1 25 75 0 0 chr15 40001645 40001698 -45694056 + AT_rich Low_complexity Low_complexity 1 53 0 2114 116 17 10 chr15 40001730 40002032 -45693722 - AluSg SINE Alu -5 305 2 452 310 0 6 chr15 40003254 40003412 -45692342 + L1MC4a LINE L1 5750 5906 -1902 2550 157 34 5 chr15 40003732 40004145 -45691609 - MSTB LTR MaLR -1 425 1 593 236 208 0 chr15 40004332 40004548 -45691206 + MIR SINE MIR 2 262 0 2212 98 0 0 chr15 40004831 40005143 -45690611 - AluSg SINE Alu 0 315 4 379 292 156 0 chr15 40005680 40005834 -45689920 + MIR3 SINE MIR 31 208 0 767 257 23 0 chr15 40005871 40006042 -45689712 + MER63A DNA MER1_type 1 175 -35 423 0 0 0 chr15 40006821 40006868 -45688886 + (TA)n Simple_repeat Simple_repeat 2 48 0 1914 133 39 0 chr15 40006869 40007148 -45688606 - AluSx SINE Alu -22 290 1 184 325 241 0 chr15 40007874 40007957 -45687797 + L2 LINE L2 3141 3243 -29 297 301 0 21 chr15 40007982 40008075 -45687679 - MIR SINE MIR -4 258 168 299 256 33 22 chr15 40008726 40008816 -45686938 - L3b LINE CR1 -178 1405 1315 203 59 0 29 chr15 40009075 40009109 -45686645 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 456 290 74 11 chr15 40010243 40010419 -45685335 + MIR SINE MIR 47 233 -29 1294 69 0 13 chr15 40010461 40010620 -45685134 - L1PA10 LINE L1 -13 6155 5999 223 240 0 0 chr15 40012166 40012216 -45683538 - MIR SINE MIR -141 121 72 2105 126 0 0 chr15 40013683 40013969 -45681785 - AluJb SINE Alu -26 286 1 474 250 0 0 chr15 40014180 40014284 -45681470 + U13 snRNA snRNA 1 104 0 518 208 19 0 chr15 40015266 40015372 -45680382 + MLT1C LTR MaLR 1 108 -359 239 278 0 0 chr15 40015369 40015423 -45680331 + MLT1C LTR MaLR 414 467 0 * 2087 172 27 0 chr15 40016010 40016348 -45679406 + MER7A DNA MER2_type 1 345 -1 273 205 26 39 chr15 40017011 40017089 -45678665 + MLT1J LTR MaLR 375 451 -60 313 309 82 21 chr15 40017284 40017478 -45678276 - L2 LINE L2 -475 2839 2634 2626 55 0 0 chr15 40017840 40018151 -45677603 + AluY SINE Alu 1 311 0 374 261 148 7 chr15 40019404 40019546 -45676208 - MIR SINE MIR -70 192 31 626 239 174 0 chr15 40019891 40020092 -45675662 - MIR SINE MIR -16 246 11 1663 140 0 0 chr15 40021640 40021876 -45673878 - AluSg/x SINE Alu 0 312 77 738 159 0 0 chr15 40022616 40022723 -45673031 + FLAM_A SINE Alu 1 107 -35 185 281 125 21 chr15 40023162 40023258 -45672496 - MIR SINE MIR -84 178 73 2225 92 0 0 chr15 40023448 40023729 -45672025 + AluSx SINE Alu 30 310 -2 31 26 0 0 chr15 40024280 40024318 -45671436 + AT_rich Low_complexity Low_complexity 1 38 0 667 299 99 43 chr15 40025045 40025080 -45670674 - L2 LINE L2 0 3313 3281 1102 198 99 37 chr15 40025080 40025404 -45670350 + MER2 DNA MER2_type 1 344 0 667 299 99 43 chr15 40025404 40025473 -45670281 - L2 LINE L2 -32 3281 3217 3217 156 25 3 chr15 40025473 40026038 -45669716 + L1PA16 LINE L1 5587 6163 -3 667 299 99 43 chr15 40026038 40026436 -45669318 - L2 LINE L2 -96 3217 2793 346 326 104 0 chr15 40026554 40026689 -45669065 - MIR3 SINE MIR -56 152 4 433 284 116 32 chr15 40027980 40028170 -45667584 - L2 LINE L2 -1135 2179 1974 645 227 65 32 chr15 40028358 40028605 -45667149 + MER112 DNA MER1_type 1 255 -1 181 340 0 0 chr15 40028687 40028734 -45667020 + L2 LINE L2 3222 3268 -4 2011 160 0 0 chr15 40029103 40029409 -45666345 + AluJo SINE Alu 1 306 -6 648 201 30 8 chr15 40029681 40029815 -45665939 + AluYb8 SINE Alu 177 313 -5 372 330 28 0 chr15 40029945 40030054 -45665700 + L2 LINE L2 3201 3312 -1 302 241 58 86 chr15 40030126 40030300 -45665454 + HAL1 LINE L1 2338 2506 -1 2255 106 3 3 chr15 40030853 40031154 -45664600 + AluSc SINE Alu 1 301 -8 213 216 0 0 chr15 40031366 40031417 -45664337 - L2 LINE L2 -2 3311 3261 21 0 0 0 chr15 40031785 40031806 -45663948 + AT_rich Low_complexity Low_complexity 1 21 0 1881 120 4 11 chr15 40033051 40033325 -45662429 + AluSx SINE Alu 1 272 -40 887 222 6 0 chr15 40034555 40034726 -45661028 - AluJo SINE Alu -17 295 124 221 246 35 0 chr15 40034823 40034880 -45660874 - L2 LINE L2 -5 3308 3250 373 288 176 39 chr15 40035446 40035599 -45660155 - MIR SINE MIR -28 234 45 1285 185 117 15 chr15 40035599 40035864 -45659890 - AluJo SINE Alu -10 292 1 373 288 176 39 chr15 40035864 40035915 -45659839 - MIR SINE MIR -217 45 2 477 0 0 0 chr15 40035936 40035989 -45659765 + (CA)n Simple_repeat Simple_repeat 2 54 0 211 313 129 35 chr15 40036161 40036362 -45659392 + L2 LINE L2 2836 3055 -217 237 135 0 0 chr15 40036694 40036746 -45659008 + (TA)n Simple_repeat Simple_repeat 1 52 0 5070 160 54 37 chr15 40036748 40037116 -45658638 - L1PB4 LINE L1 -8 6148 5788 2251 94 0 7 chr15 40037116 40037451 -45658303 + AluSq SINE Alu 1 333 0 5070 160 54 37 chr15 40037451 40038566 -45657188 - L1PB4 LINE L1 -368 5788 4639 768 122 0 0 chr15 40038567 40038674 -45657080 - U6 snRNA snRNA 0 107 1 369 0 0 0 chr15 40039149 40039190 -45656564 + (CA)n Simple_repeat Simple_repeat 2 42 0 207 0 0 0 chr15 40039190 40039213 -45656541 + (CAT)n Simple_repeat Simple_repeat 3 25 0 274 146 0 0 chr15 40039345 40039386 -45656368 - MER5A DNA MER1_type 0 189 149 470 275 30 15 chr15 40040013 40040144 -45655610 - MIR3 SINE MIR -61 147 15 1122 208 65 0 chr15 40040471 40040716 -45655038 + MER39 LTR ERV1 1 261 -446 1764 194 0 9 chr15 40040874 40041189 -45654565 + AluSx SINE Alu 1 312 0 302 336 72 32 chr15 40042523 40042648 -45653106 - L2 LINE L2 0 3313 3184 1655 189 112 26 chr15 40043523 40043979 -45651775 - MLT1D LTR MaLR -9 496 2 501 259 19 9 chr15 40043995 40044157 -45651597 - MIR SINE MIR -7 255 47 200 268 0 0 chr15 40044931 40044972 -45650782 + MIR SINE MIR 114 154 -108 1080 294 34 98 chr15 40045117 40046108 -45649646 - L2 LINE L2 -18 3254 2334 347 0 23 0 chr15 40049346 40049389 -45646365 + (TG)n Simple_repeat Simple_repeat 2 45 0 2595 186 15 4 chr15 40049703 40050245 -45645509 + L1MB7 LINE L1 5591 6138 -46 673 263 78 0 chr15 40050260 40050492 -45645262 - L1M4 LINE L1 -2268 3878 3629 204 284 0 0 chr15 40050768 40050863 -45644891 + GA-rich Low_complexity Low_complexity 1 95 0 1545 198 83 0 chr15 40051177 40051465 -45644289 + AluJo SINE Alu 1 312 0 208 87 0 43 chr15 40051582 40051628 -45644126 + (GGA)n Simple_repeat Simple_repeat 2 45 0 569 329 176 30 chr15 40051741 40052504 -45643250 + L2 LINE L2 2209 3066 -206 401 279 57 29 chr15 40053012 40053152 -45642602 + L2 LINE L2 3129 3272 0 1979 110 0 79 chr15 40053392 40053709 -45642045 + AluSx SINE Alu 1 292 -20 218 385 39 0 chr15 40053991 40054069 -45641685 + L3 LINE CR1 227 307 -1270 22 0 0 0 chr15 40054110 40054132 -45641622 + AT_rich Low_complexity Low_complexity 1 22 0 385 105 40 0 chr15 40054912 40054988 -45640766 + L1PA15 LINE L1 6087 6165 0 382 296 92 29 chr15 40055313 40055692 -45640062 + HAL1b LINE L1 68 470 -878 272 232 39 78 chr15 40055953 40056286 -45639468 - L1ME LINE L1 -2153 3927 3598 26 30 0 0 chr15 40056431 40056464 -45639290 + AT_rich Low_complexity Low_complexity 1 33 0 1417 136 17 13 chr15 40056567 40056644 -45639110 - MER46A DNA MER2_type -2495 236 161 1608 178 71 3 chr15 40056644 40056970 -45638784 + MER7A DNA MER2_type 1 346 0 1417 136 17 13 chr15 40056970 40057127 -45638627 - MER46A DNA MER2_type -2570 161 1 313 311 0 19 chr15 40057198 40057301 -45638453 - L1ME LINE L1 -2842 3238 3138 297 330 113 43 chr15 40057437 40057719 -45638035 + L3 LINE CR1 452 753 -824 632 231 24 47 chr15 40057756 40057925 -45637829 - MER91B DNA MER1_type -12 178 14 584 65 0 0 chr15 40157931 40158008 -45537746 - L1PB2 LINE L1 -191 5960 5884 2349 71 0 0 chr15 40158018 40158324 -45537430 - AluSc SINE Alu 0 306 1 665 207 0 7 chr15 40158328 40158473 -45537281 + Charlie4 DNA MER1_type 1818 1961 0 290 263 98 41 chr15 40158510 40158704 -45537050 - LTR33 LTR ERVL -310 211 7 216 0 0 0 chr15 40159850 40159874 -45535880 + (A)n Simple_repeat Simple_repeat 1 24 0 320 338 60 15 chr15 40159874 40160007 -45535747 + L1ME LINE L1 5296 5434 -808 555 298 38 8 chr15 40160020 40160255 -45535499 + L1ME LINE L1 5472 5713 -408 213 173 284 0 chr15 40160463 40160544 -45535210 - MIR SINE MIR 0 262 159 1047 253 43 43 chr15 40160629 40161004 -45534750 + LTR16A LTR ERVL 76 450 0 362 240 50 25 chr15 40161064 40161185 -45534569 + HERV16 LTR ERVL 85 208 -4788 597 253 138 30 chr15 40161361 40161665 -45534089 + HERV16 LTR ERVL 468 804 -4192 2333 94 16 3 chr15 40162529 40162838 -45532916 + AluSp SINE Alu 1 313 0 678 296 164 18 chr15 40163622 40164061 -45531693 + L1M4 LINE L1 2425 2927 -3219 1648 242 108 9 chr15 40164192 40164746 -45531008 + MLT1E2 LTR MaLR 14 622 -4 26 30 0 0 chr15 40164834 40164867 -45530887 + AT_rich Low_complexity Low_complexity 1 33 0 570 291 64 26 chr15 40165004 40165393 -45530361 - L1ME LINE L1 -3596 2484 2081 1237 217 13 26 chr15 40165917 40166221 -45529533 + MLT1C LTR MaLR 163 462 -5 834 317 14 32 chr15 40166303 40166650 -45529104 - L1ME LINE L1 -5448 622 282 356 344 6 11 chr15 40166690 40166870 -45528884 - L1ME LINE L1 -5871 199 21 260 269 64 39 chr15 40166872 40166950 -45528804 + MER5B DNA MER1_type 99 178 0 207 294 20 0 chr15 40168103 40168154 -45527600 - L3 LINE CR1 -197 1380 1329 180 0 0 0 chr15 40169461 40169481 -45526273 + (A)n Simple_repeat Simple_repeat 1 20 0 231 330 30 20 chr15 40169745 40169845 -45525909 - MIR SINE MIR -10 252 152 492 245 49 7 chr15 40170025 40170168 -45525586 - MER112 DNA MER1_type -13 247 99 220 222 95 0 chr15 40171177 40171253 -45524501 - MIR SINE MIR -95 113 37 423 327 0 7 chr15 40171371 40171521 -45524233 - MIR SINE MIR -70 192 44 253 184 58 92 chr15 40171566 40171653 -45524101 - MIR SINE MIR -67 195 112 492 257 75 53 chr15 40171664 40171851 -45523903 - MIR3 SINE MIR -5 203 13 255 194 0 148 chr15 40171900 40171922 -45523832 + MIR SINE MIR 102 126 -136 2123 157 31 28 chr15 40171922 40172311 -45523443 - MLT1B LTR MaLR 0 390 1 255 194 0 148 chr15 40172311 40172396 -45523358 + MIR SINE MIR 126 193 -69 433 243 69 7 chr15 40173110 40173254 -45522500 + MIR3 SINE MIR 35 187 -21 223 264 123 9 chr15 40173926 40174032 -45521722 + MIR SINE MIR 64 181 -81 206 323 108 0 chr15 40174277 40174370 -45521384 + L2 LINE L2 3193 3295 -18 635 314 77 8 chr15 40175604 40175865 -45519889 + MER69 DNA AcHobo 116 394 -2132 * 669 214 7 0 chr15 40175864 40176004 -45519750 + MER69 DNA AcHobo 1947 2087 -439 4809 186 39 9 chr15 40176004 40176211 -45519543 - L1M3f LINE L1 -4378 950 751 2803 7 0 0 chr15 40176211 40176511 -45519243 - AluYa5 SINE Alu -11 300 1 4809 186 39 9 chr15 40176511 40177213 -45518541 - L1M3f LINE L1 -4577 751 14 1178 236 152 3 chr15 40177223 40177579 -45518175 + MER69 DNA AcHobo 2073 2481 -45 335 208 361 8 chr15 40178124 40178254 -45517500 - MIR SINE MIR -10 252 77 427 300 61 17 chr15 40180837 40181017 -45514737 + MIR SINE MIR 75 262 0 816 93 0 0 chr15 40181237 40181345 -45514409 + MLT1C LTR MaLR 1 108 -359 3596 202 105 57 chr15 40181346 40182329 -45513425 + MLT1C-int LTR MaLR 338 1367 -4 859 148 0 54 chr15 40182335 40182484 -45513270 + MLT1C LTR MaLR 3 143 -324 3073 51 26 10 chr15 40182484 40182875 -45512879 + THE1A-int LTR MaLR 1184 1580 0 2793 99 3 0 chr15 40182875 40183229 -45512525 + THE1A LTR MaLR 1 355 0 1351 200 108 30 chr15 40183229 40183534 -45512220 + MLT1C LTR MaLR 139 467 0 204 217 0 22 chr15 40183849 40183895 -45511859 + (CA)n Simple_repeat Simple_repeat 2 46 0 1265 227 72 28 chr15 40183895 40184216 -45511538 + MER2 DNA MER2_type 1 335 -10 209 205 0 0 chr15 40184216 40184255 -45511499 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 210 335 124 49 chr15 40186501 40186871 -45508883 - L2 LINE L2 -349 2965 2568 302 342 27 9 chr15 40187608 40187719 -45508035 - MIR SINE MIR -115 147 35 329 109 18 0 chr15 40187792 40187847 -45507907 + (TA)n Simple_repeat Simple_repeat 1 56 0 247 175 35 0 chr15 40187847 40187904 -45507850 - L1MCa LINE L1 -4362 2064 2006 24 0 0 0 chr15 40188137 40188161 -45507593 + AT_rich Low_complexity Low_complexity 1 24 0 189 280 20 0 chr15 40190055 40190105 -45505649 + L3 LINE CR1 1516 1566 -11 2138 163 102 13 chr15 40190767 40191240 -45504514 + MER69 DNA AcHobo 2010 2524 -2 602 258 86 27 chr15 40191277 40191649 -45504105 + L1MC4a LINE L1 864 1257 -4862 688 183 17 9 chr15 40192095 40192210 -45503544 + FLAM_A SINE Alu 1 116 -17 419 289 62 63 chr15 40192366 40192737 -45503017 + L1MC4a LINE L1 4295 4666 -1463 2159 117 0 13 chr15 40192737 40193046 -45502708 + AluSx SINE Alu 1 305 -7 419 289 62 63 chr15 40193046 40193211 -45502543 + L1MC4a LINE L1 4666 4830 -1299 324 309 53 7 chr15 40193316 40193468 -45502286 + L1MC4a LINE L1 4874 5032 -1097 234 62 0 0 chr15 40193481 40193513 -45502241 + (TA)n Simple_repeat Simple_repeat 2 33 0 4757 224 63 15 chr15 40193768 40195473 -45500281 + L1MC4a LINE L1 5237 7791 0 1601 109 0 13 chr15 40195755 40195984 -45499770 - AluSg/x SINE Alu -11 301 76 264 290 32 21 chr15 40196101 40196194 -45499560 - MLT1J2 LTR MaLR -14 436 343 248 289 86 70 chr15 40196247 40196375 -45499379 - MLT1I LTR MaLR -189 220 91 618 272 116 37 chr15 40196408 40196585 -45499169 + L1ME4a LINE L1 2367 2529 -3600 2720 132 30 26 chr15 40196585 40197011 -45498743 - MSTA LTR MaLR 0 428 1 618 272 116 37 chr15 40197011 40197293 -45498461 + L1ME4a LINE L1 2529 2787 -3342 2107 118 7 3 chr15 40197293 40197589 -45498165 - AluSx SINE Alu -15 297 1 618 272 116 37 chr15 40197589 40197838 -45497916 + L1ME4a LINE L1 2787 3132 -2997 438 293 112 19 chr15 40198164 40198743 -45497011 + L1ME4a LINE L1 4916 5624 -523 359 289 48 6 chr15 40198988 40199132 -45496622 + L1ME4a LINE L1 5655 5807 -297 2782 93 3 0 chr15 40199132 40199487 -45496267 + L1PB1 LINE L1 5794 6149 -2 359 289 48 6 chr15 40199487 40199501 -45496253 + L1ME4a LINE L1 5807 5819 -285 298 61 41 0 chr15 40199622 40199671 -45496083 + (CA)n Simple_repeat Simple_repeat 1 51 0 336 247 234 25 chr15 40200184 40200342 -45495412 + MIR SINE MIR 1 191 -71 * 378 343 122 0 chr15 40200340 40200512 -45495242 - MIR SINE MIR 0 262 70 1864 173 3 3 chr15 40201289 40201590 -45494164 - AluSx SINE Alu -11 301 1 2418 129 17 0 chr15 40201609 40201966 -45493788 + MER57B LTR ERV1 1 363 -71 314 223 49 12 chr15 40202066 40202200 -45493554 + HAL1b LINE L1 1251 6117 -4 210 331 83 48 chr15 40202291 40202436 -45493318 + MIR SINE MIR 34 183 -79 339 25 0 0 chr15 40202556 40202596 -45493158 + (CA)n Simple_repeat Simple_repeat 2 41 0 1501 138 121 32 chr15 40203370 40203652 -45492102 + AluSx SINE Alu 1 307 -5 325 293 130 93 chr15 40203828 40204334 -45491420 + L2 LINE L2 2590 3136 -136 2040 128 0 3 chr15 40204334 40204681 -45491073 - AluSx SINE Alu 0 346 1 325 293 130 93 chr15 40204681 40204824 -45490930 + L2 LINE L2 3136 3272 0 337 155 99 28 chr15 40204951 40205022 -45490732 + MLT1A1 LTR MaLR 2 77 -351 2161 142 15 3 chr15 40205045 40205383 -45490371 + MER47A DNA MER2_type 23 364 -2 950 202 58 62 chr15 40205386 40205478 -45490276 + MLT1A1 LTR MaLR 62 153 -212 2021 113 67 0 chr15 40205478 40205760 -45489994 + AluSx SINE Alu 1 301 -11 950 202 58 62 chr15 40205760 40206016 -45489738 + MLT1A1 LTR MaLR 153 365 0 270 306 148 34 chr15 40207241 40207450 -45488304 + MIR SINE MIR 20 252 -10 198 0 0 0 chr15 40208397 40208419 -45487335 + (T)n Simple_repeat Simple_repeat 1 22 0 214 279 127 0 chr15 40208465 40208544 -45487210 - MIR SINE MIR -68 140 61 291 240 30 30 chr15 40208655 40208755 -45486999 - L1ME4a LINE L1 -2 6119 6020 1413 260 210 59 chr15 40208922 40209935 -45485819 - L2 LINE L2 -1568 1746 581 1998 157 0 0 chr15 40210009 40210314 -45485440 - AluSx SINE Alu -7 305 1 1076 128 0 0 chr15 40210580 40210772 -45484982 - AluSg/x SINE Alu 0 325 134 2205 131 0 6 chr15 40210805 40211118 -45484636 - AluSx SINE Alu 0 312 2 233 295 0 0 chr15 40211300 40211361 -45484393 - MER5A DNA MER1_type 0 189 129 182 37 37 0 chr15 40211690 40211717 -45484037 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 766 231 23 0 chr15 40212734 40212907 -45482847 - MIR SINE MIR -5 257 81 300 276 146 81 chr15 40212948 40213270 -45482484 - L2 LINE L2 -18 3254 2912 1090 192 65 19 chr15 40214041 40214169 -45481585 - MER58A DNA MER1_type -2196 224 81 198 0 0 0 chr15 40214169 40214191 -45481563 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 1090 192 65 19 chr15 40214191 40214276 -45481478 - MER58A DNA MER1_type -2339 81 1 180 290 32 54 chr15 40214580 40214673 -45481081 - MIR SINE MIR -140 122 32 418 299 43 27 chr15 40215311 40215495 -45480259 - MER5A DNA MER1_type -2 187 1 430 269 94 12 chr15 40216163 40216323 -45479431 + LTR33 LTR ERVL 306 478 -43 413 298 95 6 chr15 40216886 40217054 -45478700 + MER117 DNA MER1_type 5 187 -10 387 289 56 0 chr15 40219865 40220007 -45475747 - MIR SINE MIR -3 259 110 190 194 0 0 chr15 40220278 40220309 -45475445 + MIR SINE MIR 15 45 -217 207 0 0 0 chr15 40220644 40220667 -45475087 + (A)n Simple_repeat Simple_repeat 1 23 0 494 306 91 26 chr15 40221273 40221497 -45474257 + MIR SINE MIR 11 250 -12 1524 211 77 48 chr15 40222071 40222525 -45473229 + MLT1C LTR MaLR 1 467 0 294 235 118 0 chr15 40222755 40222823 -45472931 + Zaphod DNA AcHobo 3947 4022 -9 245 197 61 0 chr15 40222905 40222971 -45472783 + MIR SINE MIR 91 160 -102 24 0 0 0 chr15 40223055 40223079 -45472675 + AT_rich Low_complexity Low_complexity 1 24 0 512 335 24 29 chr15 40223240 40223446 -45472308 - MIR3 SINE MIR 0 208 4 183 80 0 0 chr15 40223968 40223993 -45471761 + (GA)n Simple_repeat Simple_repeat 2 26 0 667 288 91 5 chr15 40224468 40224687 -45471067 + MIR SINE MIR 25 262 0 1616 200 0 17 chr15 40226229 40226524 -45469230 + AluJo SINE Alu 1 290 -22 405 303 52 106 chr15 40226614 40227056 -45468698 + L2 LINE L2 2855 3272 0 2448 86 0 0 chr15 40227232 40227535 -45468219 - AluSc SINE Alu -4 305 3 217 233 17 17 chr15 40227549 40227609 -45468145 + L2 LINE L2 3184 3243 -29 2208 124 3 6 chr15 40228239 40228553 -45467201 - AluSp SINE Alu 0 313 1 823 180 42 0 chr15 40228670 40228837 -45466917 - LTR49-int LTR ERV1 -562 5769 5596 829 176 31 0 chr15 40228901 40229060 -45466694 + MER50-int LTR ERV1 5727 5890 -1315 354 247 49 12 chr15 40229955 40230036 -45465718 + MIR SINE MIR 23 106 -156 455 0 0 18 chr15 40231245 40231301 -45464453 + (TG)n Simple_repeat Simple_repeat 2 56 0 185 323 15 0 chr15 40233425 40233490 -45462264 + MIR SINE MIR 89 154 -108 297 333 121 10 chr15 40233681 40233879 -45461875 - L2 LINE L2 -48 3224 3005 334 0 43 0 chr15 40234677 40234723 -45461031 + (TG)n Simple_repeat Simple_repeat 1 48 0 298 274 187 40 chr15 40234917 40235191 -45460563 - L1MEd LINE L1 -860 1630 1114 322 184 101 18 chr15 40235272 40235381 -45460373 - L1MEd LINE L1 -5029 1090 973 1510 260 25 7 chr15 40235431 40235869 -45459885 - L1ME3 LINE L1 -1 6161 5716 574 326 147 35 chr15 40236042 40236670 -45459084 - L1MEd LINE L1 -5353 766 69 702 270 182 52 chr15 40238272 40238717 -45457037 + MLT1H LTR MaLR 47 549 0 402 268 63 24 chr15 40239048 40239175 -45456579 + MIR SINE MIR 118 249 -13 688 272 45 18 chr15 40239207 40239441 -45456313 - MIR SINE MIR 0 262 21 531 250 15 52 chr15 40239703 40239839 -45455915 + MIR SINE MIR 12 142 -120 209 225 0 0 chr15 40239864 40239904 -45455850 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 200 303 141 20 chr15 40240880 40240979 -45454775 - MIR SINE MIR -80 182 72 392 243 105 40 chr15 40241153 40241305 -45454449 - MER5A DNA MER1_type -22 167 6 945 171 68 49 chr15 40242695 40242900 -45452854 - MER3 DNA MER1_type 0 209 1 1733 178 0 11 chr15 40243126 40243407 -45452347 + AluJb SINE Alu 1 278 -34 203 30 0 61 chr15 40243407 40243440 -45452314 + (GGAAA)n Simple_repeat Simple_repeat 5 35 0 541 211 11 50 chr15 40244361 40244541 -45451213 + HAL1 LINE L1 1107 1279 -1228 1005 265 132 5 chr15 40244543 40244913 -45450841 + HAL1 LINE L1 1486 1902 -605 718 305 117 35 chr15 40244949 40245326 -45450428 + MLT1I LTR MaLR 1 408 -1 384 250 14 40 chr15 40245331 40245479 -45450275 + HAL1 LINE L1 1954 2097 -410 757 275 46 39 chr15 40245724 40246113 -45449641 + HAL1 LINE L1 2116 2507 0 249 244 44 33 chr15 40246263 40246353 -45449401 + HAL1b LINE L1 334 424 -924 25 51 0 0 chr15 40246619 40246658 -45449096 + AT_rich Low_complexity Low_complexity 1 39 0 2388 100 0 3 chr15 40246658 40246969 -45448785 + AluSg SINE Alu 1 310 0 324 0 0 0 chr15 40246979 40247015 -45448739 + (TA)n Simple_repeat Simple_repeat 2 37 0 263 275 96 54 chr15 40247227 40247562 -45448192 + L1M4 LINE L1 3692 4040 -2106 269 297 14 14 chr15 40247899 40248037 -45447717 + L1M4 LINE L1 4475 4612 -1534 222 37 0 0 chr15 40248041 40248068 -45447686 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 986 9 0 0 chr15 40249021 40249131 -45446623 + AluYb8 SINE Alu 209 318 0 1888 159 0 16 chr15 40249831 40250139 -45445615 + AluJb SINE Alu 1 303 -9 315 0 0 0 chr15 40250669 40250682 -45445072 + (TG)n Simple_repeat Simple_repeat 1 48 0 315 0 0 0 chr15 40250682 40250717 -45445037 + (TG)n Simple_repeat Simple_repeat 1 35 0 244 291 0 0 chr15 40252015 40252070 -45443684 + (ATG)n Simple_repeat Simple_repeat 2 56 0 216 204 23 0 chr15 40252308 40252352 -45443402 + GA-rich Low_complexity Low_complexity 3 47 0 15410 132 40 11 chr15 40252993 40253219 -45442535 - Tigger1 DNA MER2_type 0 2418 2200 1547 189 21 11 chr15 40253219 40253539 -45442215 + AluJb SINE Alu 1 323 0 15410 132 40 11 chr15 40253539 40255662 -45440092 - Tigger1 DNA MER2_type -218 2200 1 356 276 97 8 chr15 40256184 40256318 -45439436 - MIR SINE MIR -14 248 103 237 125 196 36 chr15 40256564 40256620 -45439134 - L2 LINE L2 -17 3255 3191 1481 199 65 46 chr15 40257611 40257978 -45437776 + MLT1A2 LTR MaLR 1 374 0 1361 195 65 0 chr15 40258323 40258506 -45437248 - AluJb SINE Alu -4 308 100 282 29 0 0 chr15 40258506 40258541 -45437213 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1361 195 65 0 chr15 40258541 40258634 -45437120 - AluJb SINE Alu -212 100 14 672 177 88 0 chr15 40258650 40258763 -45436991 - FLAM_C SINE Alu -10 123 1 504 230 158 20 chr15 40259359 40259511 -45436243 - MER5A DNA MER1_type -8 181 9 183 80 0 0 chr15 40259725 40259750 -45436004 + (T)n Simple_repeat Simple_repeat 1 25 0 356 340 76 71 chr15 40260559 40261202 -45434552 + L2 LINE L2 2557 3222 -50 401 331 97 6 chr15 40263090 40263265 -45432489 + MIR SINE MIR 2 192 -70 2128 109 3 0 chr15 40263479 40263762 -45431992 + AluSx SINE Alu 3 286 -26 23 0 0 0 chr15 40263762 40263785 -45431969 + AT_rich Low_complexity Low_complexity 1 23 0 473 307 98 12 chr15 40263993 40264156 -45431598 + MIR3 SINE MIR 26 202 -6 274 259 119 43 chr15 40264527 40264694 -45431060 + MIR SINE MIR 31 206 -56 327 49 0 0 chr15 40265116 40265157 -45430597 + (TG)n Simple_repeat Simple_repeat 2 42 0 297 118 0 0 chr15 40267076 40267127 -45428627 + (CA)n Simple_repeat Simple_repeat 2 52 0 846 224 57 5 chr15 40267148 40267358 -45428396 - MIR SINE MIR -10 252 32 790 275 102 62 chr15 40267580 40267984 -45427770 + MLT1J1 LTR MaLR 7 426 -20 538 226 43 38 chr15 40268709 40268806 -45426948 - LTR67 LTR ERVL -5 552 452 2013 172 13 54 chr15 40268806 40269195 -45426559 - MLT1A2 LTR MaLR -1 373 1 538 226 43 38 chr15 40269195 40269283 -45426471 - LTR67 LTR ERVL -105 452 366 476 332 18 8 chr15 40269583 40269843 -45425911 - MIR SINE MIR -17 245 19 772 248 55 20 chr15 40273250 40273452 -45422302 + MIR SINE MIR 27 235 -27 309 326 112 56 chr15 40275680 40275931 -45419823 - L2 LINE L2 -161 3111 2875 2340 106 0 0 chr15 40275931 40276234 -45419520 + AluSx SINE Alu 1 303 -9 309 326 112 56 chr15 40276234 40276677 -45419077 - L2 LINE L2 -397 2875 2376 449 281 21 46 chr15 40276934 40277172 -45418582 - MLT1L LTR MaLR -328 287 56 297 277 60 49 chr15 40277190 40277374 -45418380 - MLT1I LTR MaLR -57 352 167 526 296 97 10 chr15 40277556 40277762 -45417992 - L3 LINE CR1 -137 1440 1217 270 313 174 9 chr15 40278880 40278995 -45416759 - L2 LINE L2 0 3313 3180 1969 151 7 0 chr15 40279032 40279330 -45416424 + AluSx SINE Alu 1 300 -12 934 288 0 0 chr15 40279334 40279563 -45416191 - MIR SINE MIR -11 251 23 323 260 80 65 chr15 40279927 40280127 -45415627 - MIR3 SINE MIR -5 203 1 22 70 0 0 chr15 40281644 40281687 -45414067 + AT_rich Low_complexity Low_complexity 1 43 0 1390 156 0 0 chr15 40281824 40282048 -45413706 + AluSg/x SINE Alu 81 304 0 220 380 116 0 chr15 40282182 40282303 -45413451 + MIR SINE MIR 26 160 -102 408 284 97 15 chr15 40282675 40282809 -45412945 - L2 LINE L2 -940 2374 2230 212 328 84 103 chr15 40282813 40283075 -45412679 + L2 LINE L2 2995 3251 -21 192 233 0 0 chr15 40284021 40284064 -45411690 + MIR SINE MIR 139 181 -81 514 104 0 0 chr15 40284085 40284162 -45411592 + Alu SINE Alu 229 305 -4 22 35 0 0 chr15 40284945 40284974 -45410780 + AT_rich Low_complexity Low_complexity 1 29 0 250 109 22 0 chr15 40286162 40286208 -45409546 - MADE1 DNA Mariner 0 80 34 473 378 7 7 chr15 40286282 40286557 -45409197 + L1MEc LINE L1 159 433 -5963 1758 164 14 0 chr15 40286852 40287145 -45408609 + AluJb SINE Alu 1 297 -15 1322 236 88 93 chr15 40287208 40287265 -45408489 + L1MEc LINE L1 802 858 -5538 2256 118 0 0 chr15 40287265 40287569 -45408185 + AluSq SINE Alu 1 304 -9 1322 236 88 93 chr15 40287569 40288968 -45406786 + L1MEc LINE L1 858 2251 -4145 2148 267 81 12 chr15 40289018 40289977 -45405777 + L1MEc LINE L1 2345 3546 -2669 1890 121 6 86 chr15 40289977 40290316 -45405438 - AluSx SINE Alu 0 312 1 2148 267 81 12 chr15 40290316 40290715 -45405039 + L1MEc LINE L1 3546 3916 -2299 865 245 38 38 chr15 40290716 40291112 -45404642 - L1M4 LINE L1 -1621 4525 4130 3304 117 36 0 chr15 40291136 40291659 -45404095 + L1PA16 LINE L1 5625 6166 0 1233 254 29 58 chr15 40291929 40292554 -45403200 - L1MDb LINE L1 -5029 1514 908 489 355 33 39 chr15 40293086 40293393 -45402361 - L1MDb LINE L1 -6211 329 25 1579 186 7 11 chr15 40293753 40294032 -45401722 + AluJo SINE Alu 1 278 -34 625 44 11 11 chr15 40294034 40294124 -45401630 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 248 372 76 31 chr15 40296012 40296302 -45399452 - L2 LINE L2 -166 3106 2804 187 357 66 27 chr15 40296430 40296688 -45399066 - L2 LINE L2 -671 2643 2376 3294 192 33 25 chr15 40296726 40297020 -45398734 - L1ME1 LINE L1 -6 6160 5870 2369 66 3 30 chr15 40297020 40297325 -45398429 + AluY SINE Alu 3 299 -12 3294 192 33 25 chr15 40297325 40297813 -45397941 - L1ME1 LINE L1 -296 5870 5372 279 268 134 18 chr15 40297833 40297945 -45397809 - L2 LINE L2 -996 2318 2194 1820 159 6 31 chr15 40298297 40298581 -45397173 + AluJo SINE Alu 1 278 -34 186 71 0 0 chr15 40298581 40298609 -45397145 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1820 159 6 31 chr15 40298609 40298644 -45397110 + AluJo SINE Alu 278 312 0 877 272 17 88 chr15 40298679 40298706 -45397048 - Charlie4 DNA MER1_type -318 1643 1616 1795 163 0 0 chr15 40298706 40299028 -45396726 - AluJb SINE Alu 0 322 1 877 272 17 88 chr15 40299028 40299660 -45396094 - Charlie4 DNA MER1_type -345 1616 1029 5735 111 18 36 chr15 40299690 40300745 -45395009 - L1MA6 LINE L1 0 6300 5265 473 322 20 4 chr15 40300869 40301124 -45394630 - Charlie4 DNA MER1_type -1071 890 632 671 204 51 11 chr15 40301705 40301881 -45393873 - Charlie4 DNA MER1_type -1671 290 108 698 126 0 5 chr15 40301882 40302128 -45393626 + AluSq SINE Alu 1 279 -34 372 94 0 0 chr15 40302130 40302183 -45393571 + (GA)n Simple_repeat Simple_repeat 1 53 0 425 202 67 0 chr15 40302184 40302288 -45393466 - Charlie4 DNA MER1_type -1844 117 7 972 330 51 44 chr15 40302318 40303315 -45392439 + ERVL LTR ERVL 4344 5389 -375 603 260 11 33 chr15 40303502 40303683 -45392071 + LTR33 LTR ERVL 1 177 -344 22 35 0 0 chr15 40305746 40305775 -45389979 + AT_rich Low_complexity Low_complexity 1 29 0 5192 146 47 25 chr15 40305971 40307858 -45387896 - L1MA8 LINE L1 0 6291 4353 772 208 87 14 chr15 40308328 40308616 -45387138 - MER69 DNA AcHobo -68 2458 2150 3146 221 91 48 chr15 40308622 40309614 -45386140 - L1MC4a LINE L1 -6 7802 6759 2060 54 0 0 chr15 40309614 40309854 -45385900 - AluY SINE Alu -4 307 68 3146 221 91 48 chr15 40309854 40309931 -45385823 - L1MC4a LINE L1 -1049 6759 6687 1911 209 74 27 chr15 40309927 40310440 -45385314 - L1ME1 LINE L1 -275 5891 5355 * 2335 205 58 11 chr15 40310440 40311090 -45384664 - MER69 DNA AcHobo -388 2138 1458 2047 101 0 57 chr15 40311093 40311411 -45384343 + AluSg SINE Alu 1 300 -10 505 266 19 13 chr15 40311417 40311575 -45384179 - MER69 DNA AcHobo -944 282 124 255 357 115 19 chr15 40312936 40313093 -45382661 + L2 LINE L2 3100 3271 -1 255 182 0 0 chr15 40313113 40313157 -45382597 - L2 LINE L2 -16 3297 3254 654 253 53 47 chr15 40313158 40313498 -45382256 - L1MEd LINE L1 -4862 1257 916 307 346 50 17 chr15 40313537 40313777 -45381977 - L1MEd LINE L1 -5208 911 664 555 328 32 16 chr15 40315126 40315379 -45380375 - MIR SINE MIR -1 261 5 252 250 14 0 chr15 40316730 40316802 -45378952 + (CA)n Simple_repeat Simple_repeat 2 74 0 263 252 92 8 chr15 40316939 40317058 -45378696 + L1MC/D LINE L1 5350 5478 -2330 288 0 0 0 chr15 40317294 40317326 -45378428 + (CA)n Simple_repeat Simple_repeat 2 33 0 467 249 39 68 chr15 40317757 40317994 -45377760 - MIR SINE MIR -30 232 3 943 160 49 36 chr15 40318030 40318255 -45377499 + L1M4 LINE L1 4563 4790 -1356 6555 161 13 6 chr15 40318255 40319413 -45376341 - Ricksha_b DNA DNA 0 1254 89 2794 212 57 43 chr15 40319602 40320478 -45375276 - L1ME3 LINE L1 -21 6141 5254 4380 124 13 14 chr15 40320558 40321270 -45374484 - L1PA16 LINE L1 -3 6163 5453 204 40 0 0 chr15 40321922 40321947 -45373807 + (CA)n Simple_repeat Simple_repeat 2 26 0 193 373 63 24 chr15 40321976 40322102 -45373652 + L2 LINE L2 3138 3268 -4 2248 113 0 0 chr15 40322812 40323113 -45372641 + AluSq SINE Alu 1 301 -12 5595 222 32 14 chr15 40323828 40326071 -45369683 + L1M3f LINE L1 14 2279 -4049 2285 110 0 7 chr15 40326071 40326381 -45369373 + AluSx SINE Alu 1 308 -4 1294 201 34 40 chr15 40326595 40326893 -45368861 - AluJo SINE Alu -16 296 1 373 321 93 72 chr15 40328483 40328843 -45366911 - L2 LINE L2 -4 3268 2896 2771 0 0 7 chr15 40328843 40329148 -45366606 + AluYa5 SINE Alu 1 303 -8 373 321 93 72 chr15 40329148 40329204 -45366550 - L2 LINE L2 -376 2896 2843 280 277 21 35 chr15 40329255 40329396 -45366358 - MER103 DNA DNA -11 155 17 38 51 0 0 chr15 40330088 40330147 -45365607 + AT_rich Low_complexity Low_complexity 1 59 0 1565 174 206 9 chr15 40331129 40331565 -45364189 + Charlie1b DNA MER1_type 1 522 -1 2302 124 71 28 chr15 40331873 40332308 -45363446 - LTR24C LTR ERV1 -181 454 1 1867 130 70 0 chr15 40332357 40332642 -45363112 + AluSx SINE Alu 1 305 -7 600 111 134 111 chr15 40333858 40334030 -45361724 + MER106B DNA MER1_type 46 1044 -15 206 217 0 0 chr15 40334299 40334345 -45361409 + L2 LINE L2 3268 3313 0 687 245 97 25 chr15 40334550 40334746 -45361008 - MER63A DNA MER1_type 0 210 1 192 328 8 42 chr15 40335148 40335267 -45360487 + L2 LINE L2 3193 3307 -6 217 316 51 8 chr15 40336414 40336531 -45359223 - MIR SINE MIR -128 134 13 710 231 262 39 chr15 40336935 40337290 -45358464 - MER57A LTR ERV1 0 403 1 299 241 116 36 chr15 40337290 40337402 -45358352 - MIR SINE MIR -71 137 17 193 346 50 0 chr15 40337501 40337602 -45358152 + MIR SINE MIR 77 182 -80 346 279 82 19 chr15 40338190 40338348 -45357406 - MIR3 SINE MIR -34 174 7 1253 186 57 93 chr15 40338496 40338882 -45356872 + MLT1A2 LTR MaLR 3 374 0 207 100 300 0 chr15 40338982 40339022 -45356732 - L2 LINE L2 0 3313 3262 2031 132 7 0 chr15 40339410 40339697 -45356057 + AluSg SINE Alu 1 289 -21 330 26 0 0 chr15 40339698 40339737 -45356017 + (TA)n Simple_repeat Simple_repeat 1 39 0 271 349 0 0 chr15 40340151 40340234 -45355520 + L2 LINE L2 3209 3291 -22 244 318 66 13 chr15 40341702 40341853 -45353901 - L1ME LINE L1 -273 5897 5739 2147 111 3 3 chr15 40342423 40342721 -45353033 + AluSx SINE Alu 1 298 -14 23 0 0 0 chr15 40343122 40343145 -45352609 + AT_rich Low_complexity Low_complexity 1 23 0 43 47 0 0 chr15 40344990 40345054 -45350700 + AT_rich Low_complexity Low_complexity 1 64 0 5249 162 22 22 chr15 40345559 40347485 -45348269 + L1PA16 LINE L1 4221 6147 -19 1937 135 83 9 chr15 40347626 40347975 -45347779 + THE1C LTR MaLR 1 375 0 234 329 53 13 chr15 40348878 40348954 -45346800 + L2 LINE L2 3194 3272 0 2245 113 0 3 chr15 40351109 40351411 -45344343 + AluSq SINE Alu 1 301 -12 346 181 60 0 chr15 40352864 40352947 -45342807 + L1ME1 LINE L1 6074 6161 -5 23 33 0 0 chr15 40353360 40353390 -45342364 + AT_rich Low_complexity Low_complexity 1 30 0 906 216 25 25 chr15 40353980 40354184 -45341570 - MER20 DNA MER1_type 0 219 16 243 61 0 0 chr15 40354271 40354304 -45341450 + (TG)n Simple_repeat Simple_repeat 2 34 0 1724 153 21 38 chr15 40354502 40354789 -45340965 - AluJo SINE Alu -30 282 1 238 65 22 22 chr15 40354982 40355028 -45340726 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 4058 35 2 0 chr15 40355028 40355507 -45340247 - L1PA3 LINE L1 -24 6131 5652 235 260 87 87 chr15 40356359 40356509 -45339245 - L2 LINE L2 -4 3309 3160 769 294 77 4 chr15 40356930 40357165 -45338589 - MIR SINE MIR 0 262 11 315 325 42 8 chr15 40357430 40357550 -45338204 + L1M4 LINE L1 5078 5201 -945 314 83 62 0 chr15 40357551 40357599 -45338155 + L1P4 LINE L1 5453 5503 -658 1296 218 67 102 chr15 40359673 40360344 -45335410 + L1MC4 LINE L1 7407 7995 0 2037 138 0 16 chr15 40360354 40360659 -45335095 + AluSx SINE Alu 1 300 -12 2129 128 0 10 chr15 40360667 40360955 -45334799 + AluSx SINE Alu 1 287 -25 441 0 0 0 chr15 40360955 40361004 -45334750 + (CA)n Simple_repeat Simple_repeat 2 50 0 2129 128 0 10 chr15 40361004 40361028 -45334726 + AluSx SINE Alu 287 310 -2 32 75 0 0 chr15 40362176 40362243 -45333511 + AT_rich Low_complexity Low_complexity 1 67 0 439 321 15 23 chr15 40363743 40363874 -45331880 - MIR SINE MIR -126 136 7 260 301 27 0 chr15 40363893 40363966 -45331788 + MIR3 SINE MIR 104 178 -30 21 57 0 0 chr15 40365621 40365656 -45330098 + AT_rich Low_complexity Low_complexity 1 35 0 412 327 124 26 chr15 40365789 40366055 -45329699 - L3 LINE CR1 -3 1574 1283 317 242 178 68 chr15 40366052 40366316 -45329438 + L2 LINE L2 3020 3312 -1 * 323 337 58 23 chr15 40366339 40366511 -45329243 - L3 LINE CR1 -366 1211 1034 21 71 0 0 chr15 40367108 40367150 -45328604 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr15 40367457 40367479 -45328275 + AT_rich Low_complexity Low_complexity 1 22 0 43 35 0 0 chr15 40367671 40367728 -45328026 + AT_rich Low_complexity Low_complexity 1 57 0 1137 152 45 0 chr15 40367728 40367926 -45327828 - MER2 DNA MER2_type -138 207 1 817 258 0 28 chr15 40368384 40368601 -45327153 + MIR SINE MIR 11 221 -41 21 36 0 0 chr15 40368605 40368633 -45327121 + AT_rich Low_complexity Low_complexity 1 28 0 1068 235 107 63 chr15 40369333 40369827 -45325927 + MLT1H1 LTR MaLR 40 555 0 1228 163 0 5 chr15 40369918 40370108 -45325646 + AluJb SINE Alu 1 189 -123 271 314 35 77 chr15 40370170 40370339 -45325415 - L2 LINE L2 -217 3096 2935 335 293 123 0 chr15 40370376 40370482 -45325272 + L2 LINE L2 3195 3313 0 1051 243 108 52 chr15 40370484 40370653 -45325101 - L2 LINE L2 -429 2885 2727 2139 107 4 0 chr15 40370653 40370965 -45324789 - AluSx SINE Alu 0 313 1 1051 243 108 52 chr15 40370965 40371201 -45324553 - L2 LINE L2 -587 2727 2456 288 211 88 26 chr15 40371355 40371469 -45324285 - L1ME4a LINE L1 -1 6120 6000 219 226 0 0 chr15 40371853 40371906 -45323848 + (TG)n Simple_repeat Simple_repeat 2 54 0 479 219 23 55 chr15 40372411 40372539 -45323215 - L2 LINE L2 0 3313 3190 223 253 95 42 chr15 40372653 40372748 -45323006 - MIR SINE MIR -57 151 52 428 251 110 47 chr15 40374162 40374353 -45321401 + L2 LINE L2 3084 3286 -27 401 271 15 0 chr15 40374520 40374653 -45321101 + L1M4 LINE L1 2971 3105 -3041 5777 174 32 35 chr15 40374766 40376097 -45319657 + L1MA4 LINE L1 3510 4841 -2724 2448 110 46 7 chr15 40376097 40376512 -45319242 + L1MA5A LINE L1 5855 6287 -10 5777 174 32 35 chr15 40376512 40376667 -45319087 + L1MA4 LINE L1 4841 4995 -2570 40454 37 22 3 chr15 40376668 40382706 -45313048 + L1PA3 LINE L1 1 6155 0 6912 163 52 34 chr15 40382732 40383475 -45312279 + L1MA4 LINE L1 4978 5707 -2012 1711 164 7 40 chr15 40383475 40383779 -45311975 + AluJb SINE Alu 1 294 -18 6912 163 52 34 chr15 40383779 40385694 -45310060 + L1MA4 LINE L1 5707 7708 -11 301 304 29 0 chr15 40385815 40385917 -45309837 - L1M4c LINE L1 -3911 2473 2369 202 290 0 58 chr15 40385918 40385987 -45309767 + MIR3 SINE MIR 3 67 -141 288 308 75 9 chr15 40387095 40387202 -45308552 + L3 LINE CR1 1453 1566 -11 883 198 19 0 chr15 40388188 40388350 -45307404 - FAM SINE Alu -10 165 1 452 286 149 26 chr15 40388430 40388584 -45307170 + MER5A DNA MER1_type 11 183 -6 264 231 0 0 chr15 40388730 40388808 -45306946 + (TA)n Simple_repeat Simple_repeat 1 78 0 1204 192 38 21 chr15 40389065 40389356 -45306398 + MER46C DNA MER2_type 1 296 -42 2156 101 7 3 chr15 40389651 40389938 -45305816 - AluSg SINE Alu -22 288 1 1272 36 0 24 chr15 40390119 40390274 -45305480 - L1PA5 LINE L1 -297 5858 5706 2504 31 0 0 chr15 40390274 40390564 -45305190 + L1PA5 LINE L1 5856 6147 -7 1272 36 0 24 chr15 40390564 40390575 -45305179 - L1PA4 LINE L1 -449 5706 5696 23 0 0 0 chr15 40390575 40390598 -45305156 + AT_rich Low_complexity Low_complexity 1 23 0 34 42 0 0 chr15 40391008 40391056 -45304698 + AT_rich Low_complexity Low_complexity 1 48 0 217 274 48 60 chr15 40391185 40391269 -45304485 + MIR SINE MIR 64 146 -62 199 333 65 9 chr15 40391615 40391723 -45304031 + L2 LINE L2 2934 3047 -225 274 326 0 21 chr15 40391784 40391879 -45303875 + MIR3 SINE MIR 113 205 -3 23 33 0 0 chr15 40392524 40392554 -45303200 + AT_rich Low_complexity Low_complexity 1 30 0 2234 44 7 0 chr15 40393075 40393349 -45302405 - L1PA3 LINE L1 0 6155 5880 2781 19 0 2 chr15 40393349 40393716 -45302038 + L1PA8A LINE L1 5379 5739 -392 204 310 60 30 chr15 40394605 40394705 -45301049 + MIR SINE MIR 32 134 -128 24 91 0 0 chr15 40394873 40394939 -45300815 + AT_rich Low_complexity Low_complexity 1 66 0 1137 234 0 4 chr15 40395285 40395511 -45300243 + MIR SINE MIR 17 241 -21 463 211 24 89 chr15 40396015 40396138 -45299616 - MIR SINE MIR -70 192 78 186 50 75 0 chr15 40398126 40398166 -45297588 + (TA)n Simple_repeat Simple_repeat 2 44 0 3686 42 4 0 chr15 40398917 40399372 -45296382 + L1PA4 LINE L1 5699 6155 0 1351 183 7 39 chr15 40399786 40400071 -45295683 + AluJb SINE Alu 24 299 -13 269 185 15 0 chr15 40400075 40400140 -45295614 + A-rich Low_complexity Low_complexity 5 70 0 2380 78 0 16 chr15 40402739 40403046 -45292708 - AluSg1 SINE Alu -7 302 1 22 0 0 0 chr15 40404774 40404796 -45290958 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr15 40405535 40405560 -45290194 + AT_rich Low_complexity Low_complexity 1 25 0 193 288 0 41 chr15 40405796 40405869 -45289885 - MIR SINE MIR -119 143 74 2280 74 0 3 chr15 40405905 40406217 -45289537 - AluY SINE Alu 0 311 1 228 240 120 64 chr15 40408544 40408634 -45287120 + MIR SINE MIR 20 121 -141 2268 60 0 0 chr15 40408634 40408924 -45286830 - AluY SINE Alu 0 306 17 228 240 120 64 chr15 40408924 40408957 -45286797 + MIR SINE MIR 121 151 -111 408 226 134 63 chr15 40409412 40409651 -45286103 - L2 LINE L2 -99 3214 2959 346 243 0 0 chr15 40409658 40409732 -45286022 + MER81 DNA DNA 1 74 -40 315 216 72 0 chr15 40409741 40409852 -45285902 - L2 LINE L2 -357 2957 2839 878 190 147 9 chr15 40410864 40411075 -45284679 + MIR SINE MIR 23 262 0 221 244 53 94 chr15 40410999 40411171 -45284583 - MIR SINE MIR -57 205 41 * 318 243 12 110 chr15 40411178 40411351 -45284403 - MER5A DNA MER1_type -29 160 5 189 213 0 0 chr15 40412094 40412141 -45283613 + GA-rich Low_complexity Low_complexity 2 48 0 2425 67 0 0 chr15 40412572 40412869 -45282885 - AluY SINE Alu -14 297 1 1017 226 45 11 chr15 40412886 40413173 -45282581 - L1ME2 LINE L1 -49 6115 5819 1846 131 38 6 chr15 40413173 40413493 -45282261 + MLT1A1 LTR MaLR 1 330 -35 2146 126 3 0 chr15 40413494 40413788 -45281966 - AluJb SINE Alu -16 296 2 952 255 50 0 chr15 40415287 40415585 -45280169 + LTR16C LTR ERVL 179 491 0 557 352 67 6 chr15 40415599 40415914 -45279840 - L3 LINE CR1 -353 1224 891 839 304 50 11 chr15 40415914 40416197 -45279557 - L3 LINE CR1 -853 724 431 1576 197 18 18 chr15 40416433 40416773 -45278981 - MER58B DNA MER1_type -1 340 1 197 264 245 0 chr15 40416788 40416894 -45278860 + MIR SINE MIR 20 151 -111 183 382 49 16 chr15 40417101 40417224 -45278530 - L3 LINE CR1 -1413 164 38 2111 166 11 3 chr15 40417379 40417741 -45278013 + MLT1A1 LTR MaLR 1 365 0 2248 191 27 0 chr15 40417890 40418336 -45277418 + MLT2C2 LTR ERVL 3 460 -4 2343 116 16 35 chr15 40419001 40419372 -45276382 - THE1B LTR MaLR 0 364 1 208 311 232 20 chr15 40419405 40419556 -45276198 - L3 LINE CR1 -3 1574 1392 365 304 106 41 chr15 40420384 40420940 -45274814 + L1MC4a LINE L1 5258 5849 -1959 533 254 0 9 chr15 40421653 40421767 -45273987 - MER81 DNA DNA 0 114 2 523 266 18 41 chr15 40422535 40422704 -45273050 + MER5B DNA MER1_type 5 169 -9 1304 147 67 29 chr15 40422731 40422969 -45272785 - AluJb SINE Alu -65 247 1 254 308 33 25 chr15 40423080 40423200 -45272554 + MIR SINE MIR 138 258 -4 394 228 50 0 chr15 40424682 40424783 -45270971 + MER105 DNA DNA 31 136 -68 204 320 35 36 chr15 40425860 40426001 -45269753 - MIR SINE MIR -59 149 3 280 308 11 0 chr15 40427030 40427121 -45268633 - MIR SINE MIR -62 200 109 212 164 0 109 chr15 40427270 40427325 -45268429 + L2 LINE L2 3265 3313 0 940 123 7 7 chr15 40428201 40428347 -45267407 - AluJb SINE Alu -30 282 137 215 353 92 29 chr15 40428836 40429043 -45266711 - L3b LINE CR1 -23 1560 1341 1983 110 20 7 chr15 40430606 40430898 -45264856 + AluSx SINE Alu 1 296 -16 384 333 48 0 chr15 40431118 40431244 -45264510 - MIR SINE MIR -33 229 98 24 32 0 0 chr15 40431740 40431771 -45263983 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr15 40432066 40432098 -45263656 + AT_rich Low_complexity Low_complexity 1 32 0 285 272 152 0 chr15 40432228 40432320 -45263434 + L2 LINE L2 3163 3268 -4 203 277 92 57 chr15 40433827 40433968 -45261786 + MIR3 SINE MIR 42 187 -21 303 338 44 49 chr15 40434061 40434265 -45261489 - HAL1 LINE L1 -1789 718 516 329 136 15 0 chr15 40435087 40435153 -45260601 + CT-rich Low_complexity Low_complexity 4 70 0 1485 164 109 0 chr15 40435208 40435482 -45260272 - AluJo SINE Alu -8 304 1 454 277 118 27 chr15 40435714 40436253 -45259501 - L1MC/D LINE L1 -774 5355 5147 292 299 61 24 chr15 40436264 40436428 -45259326 - L1MC/D LINE L1 -1070 5059 4890 638 146 58 22 chr15 40436455 40436592 -45259162 - L1MB5 LINE L1 -8 6166 6025 219 69 0 0 chr15 40436622 40436651 -45259103 + (T)n Simple_repeat Simple_repeat 1 29 0 947 112 35 0 chr15 40436658 40436801 -45258953 - L1PA10 LINE L1 -112 6056 5909 1575 194 41 0 chr15 40436805 40437124 -45258630 - L1MB5 LINE L1 -142 6032 5701 254 204 19 0 chr15 40437150 40437204 -45258550 + MIR SINE MIR 178 232 -30 663 283 52 31 chr15 40437252 40437673 -45258081 - L1MC/D LINE L1 -1299 4830 4401 2040 285 118 32 chr15 40437746 40438368 -45257386 - L1MEd LINE L1 -762 1728 1161 2486 75 0 3 chr15 40438368 40438675 -45257079 - AluSc SINE Alu -3 306 1 2040 285 118 32 chr15 40438675 40439545 -45256209 - L1MEd LINE L1 -1329 1161 16 829 290 126 34 chr15 40439823 40440379 -45255375 + MLT1L LTR MaLR 1 607 -8 336 245 77 84 chr15 40440867 40441022 -45254732 + MIR SINE MIR 59 212 -50 295 226 16 0 chr15 40441698 40441760 -45253994 - MIR3 SINE MIR -48 160 98 313 301 57 100 chr15 40441970 40442319 -45253435 + L3 LINE CR1 1041 1374 -203 221 275 193 28 chr15 40443707 40443816 -45251938 + MIR SINE MIR 16 142 -66 992 201 91 0 chr15 40443835 40444034 -45251720 - MER58A DNA MER1_type -1 223 7 1110 230 54 45 chr15 40444756 40444836 -45250918 - MER46C DNA MER2_type 0 338 260 2159 128 16 0 chr15 40444836 40445141 -45250613 + AluSg SINE Alu 1 310 0 1110 230 54 45 chr15 40445141 40445395 -45250359 - MER46C DNA MER2_type -78 260 1 285 289 41 21 chr15 40445855 40445952 -45249802 + MER5B DNA MER1_type 1 99 -79 745 282 27 48 chr15 40446195 40446489 -45249265 - LTR16B LTR ERVL -138 326 39 2144 97 3 41 chr15 40448012 40448331 -45247423 + AluSg SINE Alu 1 307 -3 183 234 36 108 chr15 40449779 40449890 -45245864 + MER5C DNA MER1_type 61 163 -161 23 0 0 0 chr15 40450004 40450027 -45245727 + AT_rich Low_complexity Low_complexity 1 23 0 324 70 0 0 chr15 40450925 40450968 -45244786 + (T)n Simple_repeat Simple_repeat 1 43 0 422 307 16 0 chr15 40452171 40452298 -45243456 - MER20B DNA MER1_type -620 163 35 501 17 0 0 chr15 40452576 40452634 -45243120 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 520 185 169 8 chr15 40452760 40452890 -45242864 + MLT1E1 LTR MaLR 1 151 -503 498 177 186 18 chr15 40452996 40453109 -45242645 + MLT1E1 LTR MaLR 304 435 -191 230 150 0 0 chr15 40453106 40453146 -45242608 + MLT1E1 LTR MaLR 585 624 0 * 276 272 88 9 chr15 40453150 40453264 -45242490 + L2 LINE L2 2628 2750 -564 1437 195 35 11 chr15 40453347 40453634 -45242120 + AluJo SINE Alu 1 294 -18 193 295 51 26 chr15 40453659 40453737 -45242017 + L2 LINE L2 2744 2823 -491 933 136 6 19 chr15 40454046 40454208 -45241546 - AluSx SINE Alu -152 160 1 822 256 33 0 chr15 40454235 40454450 -45241304 + MER58A DNA MER1_type 3 224 0 630 182 0 61 chr15 40454502 40454634 -45241120 + FLAM_A SINE Alu 4 127 -6 2122 148 0 0 chr15 40454762 40455073 -45240681 + AluSx SINE Alu 1 311 -1 270 63 32 63 chr15 40455097 40455160 -45240594 + (GGAAA)n Simple_repeat Simple_repeat 3 63 0 444 283 54 2 chr15 40456098 40456250 -45239504 + MIR3 SINE MIR 51 205 -3 657 191 0 33 chr15 40458474 40458657 -45237097 + (TATATG)n Simple_repeat Simple_repeat 1 177 0 238 133 0 0 chr15 40458661 40458706 -45237048 + L1MC4 LINE L1 6659 6703 -1339 267 189 0 0 chr15 40458706 40458759 -45236995 + (TATG)n Simple_repeat Simple_repeat 1 53 0 365 240 125 31 chr15 40461994 40462090 -45233664 + L2 LINE L2 3207 3311 -2 1690 91 0 0 chr15 40462121 40462341 -45233413 - AluSg/x SINE Alu 0 312 93 212 300 36 91 chr15 40462402 40462512 -45233242 + L2 LINE L2 3187 3290 -23 836 130 15 0 chr15 40462814 40462945 -45232809 + MER5A DNA MER1_type 57 189 0 4298 164 36 57 chr15 40463060 40464694 -45231060 - L1MB7 LINE L1 -8 6176 4581 404 339 26 0 chr15 40465301 40465416 -45230338 + MIR3 SINE MIR 51 168 -40 6607 122 6 13 chr15 40466442 40467497 -45228257 + L1MA5 LINE L1 5254 6300 0 27 29 0 0 chr15 40467648 40467682 -45228072 + AT_rich Low_complexity Low_complexity 1 34 0 32 26 0 0 chr15 40467972 40468011 -45227743 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr15 40468597 40468618 -45227136 + AT_rich Low_complexity Low_complexity 1 21 0 188 190 0 103 chr15 40469171 40469229 -45226525 - MIR SINE MIR 0 262 211 317 315 27 9 chr15 40469238 40469349 -45226405 + MIR SINE MIR 31 143 -119 820 169 0 0 chr15 40469356 40469480 -45226274 + FLAM_C SINE Alu 1 124 -19 302 314 91 34 chr15 40470581 40470877 -45224877 - L1ME4a LINE L1 -224 5897 5585 24 91 0 0 chr15 40471502 40471568 -45224186 + AT_rich Low_complexity Low_complexity 1 66 0 1623 160 38 51 chr15 40476229 40476542 -45219212 - AluJb SINE Alu -3 309 1 38 22 0 0 chr15 40477057 40477102 -45218652 + AT_rich Low_complexity Low_complexity 1 45 0 32 26 0 0 chr15 40477127 40477166 -45218588 + AT_rich Low_complexity Low_complexity 1 39 0 9147 195 57 41 chr15 40477694 40479915 -45215839 - Cheshire DNA MER1_type -1 2419 1 1492 229 80 7 chr15 40480066 40480529 -45215225 + L1MC2 LINE L1 3929 4425 -1721 372 240 70 3 chr15 40480558 40480687 -45215067 + L1MC2 LINE L1 4883 5016 -1130 1301 165 0 9 chr15 40480687 40480905 -45214849 + AluJb SINE Alu 76 291 -21 5596 177 27 19 chr15 40480931 40482231 -45213523 + L1MC2 LINE L1 5009 6320 -24 323 323 10 0 chr15 40482355 40482454 -45213300 + L1M4 LINE L1 3689 3788 -2358 1387 176 88 0 chr15 40482488 40482760 -45212994 - MER46B DNA MER2_type -60 176 6 286 195 57 0 chr15 40482825 40482913 -45212841 + L1ME1 LINE L1 5818 5914 -250 * 931 237 29 64 chr15 40482894 40483240 -45212514 + L1ME1 LINE L1 5826 6159 -7 30 27 0 0 chr15 40483773 40483810 -45211944 + AT_rich Low_complexity Low_complexity 1 37 0 28 29 0 0 chr15 40483830 40483865 -45211889 + AT_rich Low_complexity Low_complexity 1 35 0 8301 122 5 29 chr15 40485803 40486474 -45209280 + HSMAR2 DNA Mariner 1 626 -676 2351 103 0 0 chr15 40486474 40486786 -45208968 + AluSx SINE Alu 1 312 0 8301 122 5 29 chr15 40486786 40487447 -45208307 + HSMAR2 DNA Mariner 626 1301 -1 2413 73 0 10 chr15 40488151 40488465 -45207289 + AluY SINE Alu 1 311 0 747 131 15 8 chr15 40489573 40489703 -45206051 + L1MB2 LINE L1 6038 6168 -3 21 0 0 0 chr15 40489703 40489724 -45206030 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 40489992 40490013 -45205741 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr15 40490132 40490168 -45205586 + AT_rich Low_complexity Low_complexity 1 36 0 27 81 0 0 chr15 40491589 40491651 -45204103 + AT_rich Low_complexity Low_complexity 1 62 0 2160 116 3 0 chr15 40491829 40492130 -45203624 - AluSx SINE Alu -10 302 1 390 154 0 0 chr15 40492645 40492723 -45203031 + (CA)n Simple_repeat Simple_repeat 1 78 0 427 279 113 43 chr15 40492847 40493616 -45202138 + L1ME2 LINE L1 1262 1981 -4559 583 263 64 34 chr15 40493616 40493852 -45201902 + L1ME2 LINE L1 4916 5158 -1382 2025 144 16 33 chr15 40493852 40494220 -45201534 - THE1B LTR MaLR 0 364 3 2953 197 76 19 chr15 40494221 40494947 -45200807 + L1ME2 LINE L1 5791 6557 -1 1727 240 94 89 chr15 40494957 40495686 -45200068 + L1ME3A LINE L1 4423 5147 -1023 1770 137 13 33 chr15 40495686 40495985 -45199769 + AluSx SINE Alu 5 297 -15 1727 240 94 89 chr15 40495985 40496997 -45198757 + L1ME3A LINE L1 5147 6170 0 2169 104 0 0 chr15 40497102 40497390 -45198364 + AluSx SINE Alu 1 288 -24 23 0 0 0 chr15 40498379 40498402 -45197352 + AT_rich Low_complexity Low_complexity 1 23 0 585 184 32 95 chr15 40499314 40499504 -45196250 + MER5B DNA MER1_type 1 178 0 1627 6 0 0 chr15 40549744 40549926 -45145828 - L1PA3 LINE L1 -277 5878 5697 1583 39 0 0 chr15 40549922 40550125 -45145629 + L1P LINE L1 5024 5226 -920 * 370 213 0 0 chr15 40550661 40550741 -45145013 + MIR SINE MIR 151 230 -32 242 284 15 0 chr15 40550910 40550977 -45144777 + L2 LINE L2 1853 1920 -1394 296 323 53 23 chr15 40551543 40551676 -45144078 + MIR3 SINE MIR 10 146 -62 325 230 42 67 chr15 40551753 40551918 -45143836 + MER103 DNA DNA 3 163 -3 186 264 0 0 chr15 40552002 40552055 -45143699 + L2 LINE L2 3261 3313 0 333 0 0 0 chr15 40553148 40553185 -45142569 + (TG)n Simple_repeat Simple_repeat 2 38 0 2218 110 5 40 chr15 40553647 40554047 -45141707 + L1HS LINE L1 5769 6154 -1 207 0 0 0 chr15 40554063 40554086 -45141668 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr15 40554360 40554381 -45141373 + AT_rich Low_complexity Low_complexity 1 21 0 22616 34 3 7 chr15 40554381 40557948 -45137806 - L1PA5 LINE L1 -8 6146 2587 309 109 0 0 chr15 40558046 40558092 -45137662 + (TA)n Simple_repeat Simple_repeat 1 46 0 23 33 0 0 chr15 40558137 40558167 -45137587 + AT_rich Low_complexity Low_complexity 1 30 0 1808 145 31 42 chr15 40559028 40559387 -45136367 + L1PB4 LINE L1 5788 6142 -14 1023 149 98 0 chr15 40560051 40560245 -45135509 - L1MA7 LINE L1 -436 5855 5643 871 148 0 7 chr15 40560245 40560387 -45135367 - Tigger7 DNA MER2_type 0 2487 2347 751 155 8 0 chr15 40560387 40560516 -45135238 - L1MA7 LINE L1 -654 5637 5508 23 33 0 0 chr15 40561457 40561487 -45134267 + AT_rich Low_complexity Low_complexity 1 30 0 296 339 64 46 chr15 40562613 40563080 -45132674 + L2 LINE L2 2594 3062 -210 5923 162 104 21 chr15 40563860 40565153 -45130601 - Charlie1a DNA MER1_type -1 1454 54 276 324 81 18 chr15 40566181 40566292 -45129462 + L2 LINE L2 3154 3271 -1 878 263 95 0 chr15 40567169 40567401 -45128353 + MIR SINE MIR 6 259 -3 1133 224 150 59 chr15 40567824 40568383 -45127371 + HAL1 LINE L1 1490 2099 -408 801 121 0 0 chr15 40568384 40568500 -45127254 + MSTB LTR MaLR 1 116 -310 1199 139 27 5 chr15 40568501 40568688 -45127066 + MSTB LTR MaLR 236 426 0 418 277 153 29 chr15 40568705 40569052 -45126702 + HAL1 LINE L1 2112 2501 -6 262 297 18 18 chr15 40571832 40571943 -45123811 + GA-rich Low_complexity Low_complexity 3 113 0 315 320 58 13 chr15 40572028 40572184 -45123570 + L1ME LINE L1 5558 5720 -401 23 33 0 0 chr15 40573350 40573380 -45122374 + AT_rich Low_complexity Low_complexity 1 30 0 246 309 62 31 chr15 40573393 40573555 -45122199 - MIR SINE MIR -72 190 24 265 130 13 65 chr15 40575249 40575326 -45120428 + (TATAA)n Simple_repeat Simple_repeat 2 74 0 641 54 27 59 chr15 40575327 40575513 -45120241 + (TA)n Simple_repeat Simple_repeat 1 180 0 280 123 97 18 chr15 40575513 40575627 -45120127 + (TATAA)n Simple_repeat Simple_repeat 5 127 0 200 278 113 87 chr15 40575707 40575822 -45119932 + L2 LINE L2 3155 3272 0 3584 164 34 28 chr15 40576247 40576403 -45119351 + L1PB4 LINE L1 5007 5161 -995 1744 183 7 0 chr15 40576403 40576687 -45119067 + AluJb SINE Alu 1 286 -26 3584 164 34 28 chr15 40576687 40577494 -45118260 + L1PB4 LINE L1 5161 5959 -197 7075 85 16 2 chr15 40577564 40578601 -45117153 + L1MA3 LINE L1 5254 6305 0 693 234 5 21 chr15 40578616 40578808 -45116946 + L1PB4 LINE L1 5966 6154 -2 31 0 0 0 chr15 40578810 40578841 -45116913 + AT_rich Low_complexity Low_complexity 1 31 0 2266 92 3 7 chr15 40579629 40579924 -45115830 + AluSq SINE Alu 1 294 -19 207 133 0 44 chr15 40580038 40580083 -45115671 + (CAAAT)n Simple_repeat Simple_repeat 2 44 0 38 30 0 30 chr15 40580852 40580871 -45114883 + AT_rich Low_complexity Low_complexity 1 19 -46 1125 56 0 0 chr15 40580871 40581015 -45114739 + L1PA5 LINE L1 6004 6147 -7 38 30 0 30 chr15 40581015 40581062 -45114692 + AT_rich Low_complexity Low_complexity 19 65 0 208 73 0 122 chr15 40581261 40581302 -45114452 - L2 LINE L2 -15 3298 3263 2014 121 3 10 chr15 40581416 40581714 -45114040 + AluSx SINE Alu 1 296 -16 200 270 0 0 chr15 40583272 40583309 -45112445 - L2 LINE L2 -15 3298 3262 517 56 14 0 chr15 40583370 40583441 -45112313 + MADE1 DNA Mariner 9 80 0 216 216 0 0 chr15 40583865 40583916 -45111838 + GA-rich Low_complexity Low_complexity 1 51 0 28 0 0 0 chr15 40585185 40585213 -45110541 + AT_rich Low_complexity Low_complexity 1 28 0 2052 103 6 48 chr15 40585266 40585578 -45110176 + AluSg SINE Alu 1 299 -11 240 214 0 0 chr15 40586174 40586230 -45109524 + T-rich Low_complexity Low_complexity 1 56 0 10749 23 2 0 chr15 40586231 40588260 -45107494 - L1PA4 LINE L1 -3 6152 4119 1793 156 0 35 chr15 40588635 40588949 -45106805 + AluSq SINE Alu 1 303 -10 326 276 55 61 chr15 40589454 40589617 -45106137 - MIR SINE MIR -50 212 51 574 339 6 12 chr15 40590033 40590201 -45105553 - MIR3 SINE MIR -21 187 21 2388 73 13 7 chr15 40590517 40590820 -45104934 + AluY SINE Alu 1 305 -6 336 312 87 23 chr15 40591716 40591889 -45103865 - MIR3 SINE MIR -9 199 16 2122 55 14 4 chr15 40592595 40592870 -45102884 + L1PA8 LINE L1 5894 6171 -1 277 250 105 0 chr15 40593058 40593134 -45102620 - MIR SINE MIR -114 148 65 2133 82 0 49 chr15 40593357 40593663 -45102091 - AluY SINE Alu -20 291 1 840 210 95 5 chr15 40593987 40594187 -45101567 - MER20 DNA MER1_type -1 218 1 7885 53 12 5 chr15 40594273 40595272 -45100482 + LTR13 LTR ERVK 2 1007 0 180 214 24 0 chr15 40596002 40596044 -45099710 - MIR3 SINE MIR -36 172 130 21 57 0 0 chr15 40596207 40596242 -45099512 + AT_rich Low_complexity Low_complexity 1 35 0 251 143 122 0 chr15 40596242 40596291 -45099463 - MIR SINE MIR -73 135 81 939 200 29 0 chr15 40596629 40596834 -45098920 - MER2 DNA MER2_type -134 211 1 989 187 0 0 chr15 40596897 40597068 -45098686 + FRAM SINE Alu 1 171 -5 840 156 92 76 chr15 40597112 40597426 -45098328 - MER33 DNA MER1_type 0 324 6 864 142 0 0 chr15 40599057 40599222 -45096532 - FRAM SINE Alu 0 176 12 299 308 50 44 chr15 40600050 40600232 -45095522 + L2 LINE L2 2575 2757 -557 391 198 45 81 chr15 40600687 40600798 -45094956 - MIR SINE MIR -76 186 80 603 231 46 40 chr15 40601586 40601759 -45093995 - MIR3 SINE MIR -15 193 20 343 240 185 7 chr15 40602351 40602497 -45093257 - MIR SINE MIR 0 262 91 1891 165 10 0 chr15 40602725 40603022 -45092732 + AluJb SINE Alu 1 300 -12 1826 174 0 7 chr15 40603097 40603390 -45092364 + AluJb SINE Alu 1 291 -21 309 218 11 46 chr15 40603689 40603776 -45091978 + L2 LINE L2 3188 3271 -1 451 294 128 5 chr15 40603826 40604030 -45091724 - MIR SINE MIR -30 232 4 398 257 97 14 chr15 40604165 40604309 -45091445 + MIR SINE MIR 70 225 -37 520 193 44 15 chr15 40604682 40604817 -45090937 - L1ME3 LINE L1 0 6162 6024 223 289 62 31 chr15 40604979 40605076 -45090678 - MIR SINE MIR -46 216 117 478 297 142 77 chr15 40605934 40606809 -45088945 + L1M2 LINE L1 751 1426 -5423 246 233 14 41 chr15 40607297 40607370 -45088384 - MIR3 SINE MIR -1 207 137 340 194 175 19 chr15 40607444 40607547 -45088207 - MIR SINE MIR -72 136 18 1848 135 4 4 chr15 40607608 40607889 -45087865 + AluJb SINE Alu 1 281 -31 180 0 0 0 chr15 40607892 40607912 -45087842 + (TAA)n Simple_repeat Simple_repeat 2 21 0 311 240 380 0 chr15 40607915 40608036 -45087718 - MIR SINE MIR -54 208 42 21 36 0 0 chr15 40608519 40608547 -45087207 + AT_rich Low_complexity Low_complexity 1 28 0 509 316 6 0 chr15 40608603 40608771 -45086983 - FRAM SINE Alu -4 172 4 46 83 0 0 chr15 40608784 40608893 -45086861 + AT_rich Low_complexity Low_complexity 1 109 0 317 286 63 111 chr15 40608994 40609372 -45086382 + L1M2 LINE L1 756 1115 -5734 246 233 14 41 chr15 40609866 40609939 -45085815 - MIR3 SINE MIR -1 207 137 340 194 175 19 chr15 40610013 40610116 -45085638 - MIR SINE MIR -72 136 18 1761 136 11 4 chr15 40610177 40610456 -45085298 + AluJb SINE Alu 1 281 -31 180 0 0 0 chr15 40610459 40610479 -45085275 + (TAA)n Simple_repeat Simple_repeat 2 21 0 311 240 380 0 chr15 40610482 40610603 -45085151 - MIR SINE MIR -54 208 42 21 36 0 0 chr15 40611086 40611114 -45084640 + AT_rich Low_complexity Low_complexity 1 28 0 841 233 6 0 chr15 40611170 40611350 -45084404 - FRAM SINE Alu -4 172 1 334 267 75 86 chr15 40612102 40612156 -45083598 - MIR3 SINE MIR -1 207 154 2173 90 7 7 chr15 40612156 40612467 -45083287 + AluSg SINE Alu 2 312 0 334 267 75 86 chr15 40612467 40612598 -45083156 - MIR3 SINE MIR -54 154 23 635 219 52 30 chr15 40613583 40613816 -45081938 - L1ME2 LINE L1 -172 5992 5755 * 941 198 53 22 chr15 40613809 40614029 -45081725 - L1MCb LINE L1 -4036 2528 2293 1349 108 85 0 chr15 40614029 40614241 -45081513 - MER30 DNA MER1_type 0 230 1 941 198 53 22 chr15 40614241 40614339 -45081415 - L1MCb LINE L1 -4271 2293 2200 * 3799 222 98 20 chr15 40614337 40615725 -45080029 - L1MCb LINE L1 -4851 1194 4 1367 201 4 11 chr15 40615795 40616074 -45079680 - L1ME2 LINE L1 -395 5769 5493 560 155 0 19 chr15 40616105 40616208 -45079546 + Tigger5 DNA MER2_type 1 101 -2222 2165 107 7 13 chr15 40616391 40616699 -45079055 + AluSg SINE Alu 1 306 -4 622 282 40 19 chr15 40617084 40617316 -45078438 + MIR SINE MIR 23 256 -6 2246 88 0 0 chr15 40617550 40617865 -45077889 - AluSx SINE Alu 0 315 1 184 347 202 5 chr15 40617866 40618059 -45077695 - MIR SINE MIR -9 253 23 281 319 178 13 chr15 40618695 40618738 -45077016 - MIR3 SINE MIR -10 198 163 2132 118 3 16 chr15 40618738 40619043 -45076711 - AluSc SINE Alu -8 301 1 281 319 178 13 chr15 40619043 40619156 -45076598 - MIR3 SINE MIR -45 163 16 26 64 0 0 chr15 40619333 40619380 -45076374 + AT_rich Low_complexity Low_complexity 1 47 0 2222 129 0 3 chr15 40619493 40619845 -45075909 - AluSx SINE Alu 0 351 1 220 233 0 50 chr15 40620626 40620686 -45075068 - L2 LINE L2 -13 3300 3244 412 290 152 0 chr15 40620701 40620839 -45074915 + MIR3 SINE MIR 2 160 -48 310 276 29 19 chr15 40620844 40620949 -45074805 + MER117 DNA MER1_type 6 111 -86 195 347 0 28 chr15 40621229 40621301 -45074453 - L2 LINE L2 -208 3064 2995 26 0 0 0 chr15 40621341 40621367 -45074387 + AT_rich Low_complexity Low_complexity 1 26 0 319 272 95 45 chr15 40621480 40621625 -45074129 - MIR SINE MIR -62 146 45 516 133 80 66 chr15 40622096 40622247 -45073507 - LTR33A LTR ERVL -9 514 362 271 311 153 56 chr15 40622286 40622394 -45073360 - L2 LINE L2 -40 3273 3177 2155 125 7 0 chr15 40622394 40622691 -45073063 + AluSq SINE Alu 1 299 -14 271 311 153 56 chr15 40622691 40622903 -45072851 - L2 LINE L2 -136 3177 2922 213 220 0 0 chr15 40623645 40623695 -45072059 + (CAT)n Simple_repeat Simple_repeat 3 52 0 7325 90 4 16 chr15 40624947 40626017 -45069737 - MER11C LTR ERVK -14 1057 1 826 208 12 18 chr15 40626116 40626284 -45069470 - FAM SINE Alu -4 171 5 1573 281 24 24 chr15 40626418 40627092 -45068662 - L2 LINE L2 -114 3199 2536 473 315 22 22 chr15 40627833 40628011 -45067743 + MER117 DNA MER1_type 4 181 -16 476 201 238 6 chr15 40628293 40628457 -45067297 - MIR SINE MIR -13 249 48 662 290 17 34 chr15 40629246 40629484 -45066270 + MIR SINE MIR 29 262 0 378 0 0 0 chr15 40629625 40629667 -45066087 + (TC)n Simple_repeat Simple_repeat 1 42 0 244 287 30 10 chr15 40629784 40629885 -45065869 - MLT1K LTR MaLR -320 268 166 24 32 0 0 chr15 40630188 40630219 -45065535 + AT_rich Low_complexity Low_complexity 1 31 0 2532 132 42 5 chr15 40630978 40631386 -45064368 + MSTA LTR MaLR 6 428 0 1132 220 111 10 chr15 40631386 40631776 -45063978 - L1MD2 LINE L1 -77 6089 5669 337 260 8 24 chr15 40631774 40631897 -45063857 + L1ME3A LINE L1 6043 6163 -7 * 2099 111 3 10 chr15 40632148 40632437 -45063317 - AluSx SINE Alu -20 292 6 595 233 16 8 chr15 40633918 40634047 -45061707 + LTR67 LTR ERVL 428 557 0 276 282 24 117 chr15 40634869 40635075 -45060679 + MER91B DNA MER1_type 1 187 -3 1607 241 91 22 chr15 40635534 40635998 -45059756 + MER20B DNA MER1_type 1 496 -287 1984 115 17 0 chr15 40636129 40636417 -45059337 + AluSx SINE Alu 1 293 -19 2320 92 0 7 chr15 40636942 40637248 -45058506 - AluY SINE Alu -7 304 1 21 0 0 0 chr15 40637254 40637275 -45058479 + AT_rich Low_complexity Low_complexity 1 21 0 694 238 32 0 chr15 40637297 40637482 -45058272 + MER20B DNA MER1_type 509 699 -84 2265 93 3 0 chr15 40637482 40637771 -45057983 - AluSc SINE Alu -17 292 3 712 256 107 0 chr15 40638296 40638530 -45057224 - LTR33A LTR ERVL 0 523 265 773 161 0 44 chr15 40638828 40638965 -45056789 - FLAM_A SINE Alu -2 131 1 294 274 95 37 chr15 40639725 40639915 -45055839 + MER112 DNA MER1_type 1 201 -59 8043 34 0 0 chr15 40640600 40642198 -45053556 + L1PA4 LINE L1 4557 6155 0 229 333 0 26 chr15 40642352 40642430 -45053324 - MIR SINE MIR -150 112 37 479 345 80 26 chr15 40643161 40643425 -45052329 - MLT1K LTR MaLR -284 304 27 254 184 122 0 chr15 40643619 40643668 -45052086 + MER69 DNA AcHobo 2 56 -2470 * 1929 171 56 63 chr15 40643656 40643756 -45051998 + MER69 DNA AcHobo 2051 2150 -376 2101 109 25 0 chr15 40643756 40644039 -45051715 + AluSp SINE Alu 1 290 -23 1929 171 56 63 chr15 40644039 40644417 -45051337 + MER69 DNA AcHobo 2150 2526 0 313 299 92 24 chr15 40644475 40644639 -45051115 - MLT1K LTR MaLR -240 348 174 510 219 29 0 chr15 40644806 40644911 -45050843 + MER96B DNA MER1_type? 3 110 -307 445 218 0 78 chr15 40645759 40645901 -45049853 + MIR3 SINE MIR 70 200 -8 696 204 22 61 chr15 40646134 40646365 -45049389 - LTR16B LTR ERVL 0 464 243 1612 200 6 9 chr15 40646376 40646696 -45049058 - MLT1B LTR MaLR 0 390 72 7231 125 10 34 chr15 40646697 40647651 -45048103 + Tigger1 DNA MER2_type 1 987 -1431 2112 131 0 7 chr15 40647651 40647957 -45047797 + AluSx SINE Alu 9 312 0 7231 125 10 34 chr15 40647957 40648528 -45047226 + Tigger1 DNA MER2_type 987 1570 -848 347 353 30 0 chr15 40649101 40649234 -45046520 + MIR SINE MIR 47 183 -79 742 159 0 0 chr15 40649919 40650045 -45045709 + L1MA7 LINE L1 6166 6291 0 257 279 23 0 chr15 40650251 40650337 -45045417 + (TA)n Simple_repeat Simple_repeat 2 89 0 360 296 104 8 chr15 40650839 40650964 -45044790 - MIR3 SINE MIR -49 159 23 2092 133 0 9 chr15 40652263 40652578 -45043176 - AluJo SINE Alu 0 312 1 375 310 93 8 chr15 40653843 40653996 -45041758 - MIR SINE MIR -77 131 8 1338 296 122 86 chr15 40654871 40655078 -45040676 - L3 LINE CR1 -24 1553 1355 1810 162 0 23 chr15 40655078 40655387 -45040367 - AluJb SINE Alu -9 303 2 1338 296 122 86 chr15 40655387 40656312 -45039442 - L3 LINE CR1 -222 1355 369 2186 53 8 0 chr15 40656312 40656576 -45039178 + AluSp SINE Alu 3 268 -45 1338 296 122 86 chr15 40656576 40656698 -45039056 - L3 LINE CR1 -1208 369 253 2406 86 0 3 chr15 40657115 40657417 -45038337 - AluSq SINE Alu -12 301 1 2399 87 3 0 chr15 40657514 40657813 -45037941 - AluSq SINE Alu -13 300 1 2203 83 55 0 chr15 40657930 40658219 -45037535 - AluSp SINE Alu -8 305 1 1849 144 4 0 chr15 40658408 40658679 -45037075 + MER7A DNA MER2_type 1 270 -76 303 88 35 105 chr15 40658696 40658753 -45037001 + Tigger3(Golem) DNA MER2_type 2873 2925 -104 377 315 117 11 chr15 40659904 40660090 -45035664 - MIR SINE MIR -25 237 32 905 152 37 12 chr15 40660735 40660899 -45034855 - L1MB7 LINE L1 -19 6165 5998 489 305 63 23 chr15 40661456 40661630 -45034124 + L2 LINE L2 3131 3311 -2 2868 133 65 15 chr15 40662074 40662554 -45033200 - MER41B LTR ERV1 0 635 132 293 275 22 33 chr15 40664261 40664352 -45031402 + L2 LINE L2 3224 3313 0 324 264 168 48 chr15 40664602 40664720 -45031034 + MIR3 SINE MIR 13 158 -50 570 312 26 5 chr15 40664720 40664909 -45030845 + MER117 DNA MER1_type 2 194 -3 324 264 168 48 chr15 40664909 40664957 -45030797 + MIR3 SINE MIR 158 199 -9 779 296 24 8 chr15 40665021 40665268 -45030486 - MIR SINE MIR -4 258 8 2295 133 54 20 chr15 40667345 40667697 -45028057 - THE1B LTR MaLR 0 364 1 352 293 25 50 chr15 40667753 40667951 -45027803 - L1M4 LINE L1 -1337 4809 4617 269 272 114 27 chr15 40668019 40668420 -45027334 + L1M4 LINE L1 4914 5342 -812 1603 206 57 64 chr15 40668479 40668600 -45027154 - MER110A LTR ERV1 0 468 348 2448 88 0 0 chr15 40668600 40668905 -45026849 + AluY SINE Alu 1 305 -6 1603 206 57 64 chr15 40668905 40669254 -45026500 - MER110A LTR ERV1 -120 348 1 432 271 94 70 chr15 40669314 40669789 -45025965 + L1MCc LINE L1 5 833 -5589 2310 243 120 17 chr15 40670020 40671344 -45024410 + L1MCc LINE L1 978 2164 -4777 2324 110 0 0 chr15 40671344 40671652 -45024102 + AluSx SINE Alu 1 308 -4 2310 243 120 17 chr15 40671652 40672447 -45023307 + L1MCc LINE L1 2164 3458 -3483 454 316 86 55 chr15 40672463 40673118 -45022636 + ERVL LTR ERVL 1121 1795 -3969 1722 202 50 0 chr15 40673123 40673440 -45022314 - MER58B DNA MER1_type 0 341 9 387 0 0 0 chr15 40674189 40674232 -45021522 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 7655 55 0 1 chr15 40674238 40675648 -45020106 - L1PA8 LINE L1 -13 6159 4753 474 284 26 20 chr15 40675904 40676088 -45019666 + MIR SINE MIR 23 203 -59 273 167 0 0 chr15 40676114 40676162 -45019592 - L1PA16 LINE L1 0 6166 6119 299 282 113 9 chr15 40676985 40677102 -45018652 - MIR SINE MIR -62 146 40 182 231 0 0 chr15 40679125 40679164 -45016590 + MIR SINE MIR 40 78 -184 360 43 0 0 chr15 40679380 40679426 -45016328 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 1200 96 28 11 chr15 40679809 40679986 -45015768 + LTR54 LTR ERV1 1 180 -330 2365 92 0 0 chr15 40680153 40680448 -45015306 - AluSx SINE Alu -17 295 1 271 299 8 55 chr15 40680597 40680620 -45015134 + MIR SINE MIR 53 76 -186 1962 191 99 64 chr15 40680620 40681106 -45014648 - MLT1D LTR MaLR -2 503 1 271 299 8 55 chr15 40681106 40681209 -45014545 + MIR SINE MIR 76 173 -89 264 277 31 15 chr15 40681280 40681345 -45014409 - L2 LINE L2 0 3313 3248 904 196 0 0 chr15 40682243 40682406 -45013348 + FRAM SINE Alu 1 163 -13 3142 120 48 28 chr15 40682519 40682802 -45012952 - MER34B LTR ERV1 -12 553 277 2462 134 12 50 chr15 40682802 40683221 -45012533 - MER57A LTR ERV1 0 403 1 3142 120 48 28 chr15 40683221 40683479 -45012275 - MER34B LTR ERV1 -288 277 1 2982 29 0 0 chr15 40684154 40684500 -45011254 - L1PA2 LINE L1 -1442 4704 4359 8289 14 4 2 chr15 40684500 40685959 -45009795 + L1PA2 LINE L1 4718 6179 0 1930 147 0 0 chr15 40686113 40686428 -45009326 - AluSx SINE Alu 0 315 1 328 226 85 9 chr15 40686649 40686755 -45008999 - MIR SINE MIR -55 207 94 375 23 0 0 chr15 40688958 40689002 -45006752 + (TG)n Simple_repeat Simple_repeat 1 44 0 456 264 9 9 chr15 40689628 40689738 -45006016 - L2 LINE L2 -15 3298 3189 509 321 20 25 chr15 40690183 40690379 -45005375 - MIR SINE MIR -34 228 34 740 233 85 27 chr15 40692044 40692267 -45003487 + MIR SINE MIR 17 252 -10 478 294 95 35 chr15 40693387 40693618 -45002136 - MIR SINE MIR -6 256 12 387 236 102 64 chr15 40695095 40695252 -45000502 + MIR SINE MIR 33 195 -67 582 307 82 43 chr15 40695588 40695845 -44999909 - L2 LINE L2 -14 3258 2992 368 215 39 54 chr15 40696397 40696527 -44999227 + L1MC4 LINE L1 7911 8038 -4 247 244 0 0 chr15 40697311 40697356 -44998398 + polypyrimidine Low_complexity Low_complexity 1 45 0 389 188 38 0 chr15 40697360 40697440 -44998314 - LTR16A LTR ERVL -44 406 324 551 226 47 55 chr15 40697576 40697760 -44997994 - L1MC5 LINE L1 -201 7760 7577 324 0 0 0 chr15 40697760 40697796 -44997958 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 551 226 47 55 chr15 40697796 40697868 -44997886 - L1MC5 LINE L1 -384 7577 7506 741 131 25 0 chr15 40697869 40697991 -44997763 - L1MA5A LINE L1 0 6297 6173 230 219 62 0 chr15 40698105 40698169 -44997585 + MLT1L LTR MaLR 166 233 -382 4696 187 108 123 chr15 40698324 40700022 -44995732 + L1MA6 LINE L1 2967 4688 -3031 1008 245 84 20 chr15 40700022 40700379 -44995375 + MSTC LTR MaLR 1 428 0 4696 187 108 123 chr15 40700379 40702762 -44992992 + L1MA6 LINE L1 4688 7332 -387 263 61 0 0 chr15 40702765 40702798 -44992956 - L1M2a LINE L1 -7135 33 1 183 152 0 0 chr15 40702819 40702865 -44992889 + (TA)n Simple_repeat Simple_repeat 1 46 0 192 308 19 0 chr15 40703004 40703056 -44992698 - L3 LINE CR1 -250 1327 1275 265 301 122 16 chr15 40703164 40703287 -44992467 + MIR3 SINE MIR 36 171 -37 441 219 136 19 chr15 40703680 40703835 -44991919 - MIR SINE MIR -78 184 12 21 0 0 0 chr15 40704978 40704999 -44990755 + GC_rich Low_complexity Low_complexity 1 21 0 277 83 0 0 chr15 40705426 40705462 -44990292 + U2 snRNA snRNA 1 36 -152 263 244 65 73 chr15 40705647 40705770 -44989984 - MIR SINE MIR -61 147 26 349 241 0 46 chr15 40706169 40706256 -44989498 + L2 LINE L2 3182 3264 -8 187 253 93 13 chr15 40706325 40706400 -44989354 - MIR SINE MIR -67 195 115 183 204 0 0 chr15 40706476 40706525 -44989229 + CT-rich Low_complexity Low_complexity 4 52 0 1226 185 4 2 chr15 40706739 40707017 -44988737 - MER2 DNA MER2_type -15 330 6 227 287 22 110 chr15 40707452 40707588 -44988166 - MIR SINE MIR -121 141 18 325 244 166 83 chr15 40707735 40707964 -44987790 - MIR SINE MIR -2 260 13 447 300 202 15 chr15 40708600 40708927 -44986827 - L1ME3 LINE L1 -296 5866 5485 1380 135 154 18 chr15 40708932 40709214 -44986540 + MLT1A1 LTR MaLR 2 348 -42 1192 153 0 0 chr15 40709215 40709392 -44986362 - AluJb SINE Alu -135 177 1 781 156 15 7 chr15 40709425 40709560 -44986194 + MLT1B LTR MaLR 1 136 -254 239 228 69 118 chr15 40709568 40709743 -44986011 - L1ME3 LINE L1 -932 5214 5053 2495 145 6 3 chr15 40709743 40710108 -44985646 + MER47A DNA MER2_type 1 366 0 239 228 69 118 chr15 40710108 40710178 -44985576 - L1ME3 LINE L1 -1093 5053 4981 294 336 45 0 chr15 40710178 40710288 -44985466 + L3 LINE CR1 1391 1505 -72 264 300 156 0 chr15 40710628 40710718 -44985036 + MIR SINE MIR 18 121 -87 2108 126 3 22 chr15 40710741 40711059 -44984695 - AluSq SINE Alu -1 312 1 234 272 81 44 chr15 40711059 40711195 -44984559 + MIR SINE MIR 98 238 -24 278 362 43 35 chr15 40711661 40711802 -44983952 + MIR3 SINE MIR 40 181 -27 1911 246 30 13 chr15 40712136 40712595 -44983159 - MLT1C LTR MaLR 0 467 1 778 298 78 19 chr15 40713451 40713770 -44981984 - LTR16A LTR ERVL 0 450 113 306 314 102 0 chr15 40714088 40714225 -44981529 + L1ME4a LINE L1 5754 5904 -217 1081 161 44 1 chr15 40714591 40714842 -44980912 + MER33 DNA MER1_type 1 247 -77 25 31 0 0 chr15 40715685 40715717 -44980037 + AT_rich Low_complexity Low_complexity 1 32 0 207 304 0 18 chr15 40715946 40716002 -44979752 + MIR SINE MIR 57 111 -151 296 191 0 16 chr15 40716021 40716084 -44979670 - MIR SINE MIR -89 173 112 21 57 0 0 chr15 40716653 40716688 -44979066 + AT_rich Low_complexity Low_complexity 1 35 0 1249 57 23 34 chr15 40716940 40717117 -44978637 + L1PA6 LINE L1 5978 6152 -2 266 95 24 0 chr15 40717407 40717449 -44978305 + MSTC LTR MaLR 1 43 -385 231 36 0 0 chr15 40717799 40717827 -44977927 + (TA)n Simple_repeat Simple_repeat 2 29 0 2065 155 5 29 chr15 40719475 40719861 -44975893 + L1MA4 LINE L1 4628 5004 -1142 3805 138 17 5 chr15 40719861 40720456 -44975298 + L1MA5A LINE L1 5689 6291 -6 538 136 12 0 chr15 40720512 40720593 -44975161 - FLAM SINE Alu -20 123 42 6119 130 27 37 chr15 40720655 40720986 -44974768 + L1MA4 LINE L1 4993 5326 -974 1653 170 18 11 chr15 40720986 40721269 -44974485 + AluJo SINE Alu 6 290 -22 6119 130 27 37 chr15 40721269 40722235 -44973519 + L1MA4 LINE L1 5326 6293 -7 548 207 12 12 chr15 40723072 40723236 -44972518 + CT-rich Low_complexity Low_complexity 1 164 0 1539 158 28 49 chr15 40723236 40723521 -44972233 - AluJo SINE Alu -33 279 1 223 208 21 0 chr15 40724034 40724082 -44971672 + GA-rich Low_complexity Low_complexity 2 50 0 694 229 139 96 chr15 40724990 40725379 -44970375 + MER110 LTR ERV1 83 466 -9 1351 107 0 14 chr15 40725601 40725816 -44969938 - pTR5 LTR ERV1 -2046 392 181 300 277 18 18 chr15 40725818 40725930 -44969824 - LTR30 LTR ERV1 -67 655 544 3035 188 66 44 chr15 40725934 40726908 -44968846 - pTR5 LTR ERV1 -417 2021 743 199 352 50 57 chr15 40728918 40729077 -44966677 + L2 LINE L2 2936 3093 -179 308 248 156 28 chr15 40729142 40729335 -44966419 + MIR SINE MIR 47 262 0 229 286 43 0 chr15 40729571 40729641 -44966113 + MER45C DNA AcHobo 2 74 -879 * 1491 283 60 9 chr15 40729639 40730085 -44965669 + MER45C DNA AcHobo 445 913 -40 356 321 96 68 chr15 40730258 40730857 -44964897 + L2 LINE L2 2655 3264 -8 1849 177 0 7 chr15 40731274 40731568 -44964186 - AluJb SINE Alu -20 292 1 26 0 0 0 chr15 40731744 40731770 -44963984 + AT_rich Low_complexity Low_complexity 1 26 0 258 305 78 7 chr15 40732286 40732440 -44963314 - L1ME3A LINE L1 -230 5940 5776 180 0 0 0 chr15 40734208 40734228 -44961526 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 295 278 99 31 chr15 40734526 40734688 -44961066 + MIR SINE MIR 78 250 -12 2507 43 0 0 chr15 40735242 40735524 -44960230 + AluY SINE Alu 20 301 -10 2382 97 3 0 chr15 40735922 40736230 -44959524 - AluSg SINE Alu -1 309 1 344 50 0 0 chr15 40736337 40736377 -44959377 - U2 snRNA snRNA -148 40 1 276 252 117 27 chr15 40736634 40736856 -44958898 + L1ME4a LINE L1 5874 6115 -6 2117 137 0 9 chr15 40737654 40737969 -44957785 - AluSx SINE Alu 0 312 1 206 211 39 96 chr15 40738396 40738500 -44957254 - MIR SINE MIR -54 208 111 185 278 0 0 chr15 40738502 40738556 -44957198 + MIR SINE MIR 203 256 -6 453 144 0 29 chr15 40738942 40739039 -44956715 - MER58 DNA MER1_type -3 2417 250 357 174 42 138 chr15 40739093 40739260 -44956494 + MER58C DNA MER1_type 64 214 -1 2737 167 31 58 chr15 40739351 40739623 -44956131 + L1PB4 LINE L1 3885 4163 -1993 2737 148 21 58 chr15 40739623 40739757 -44955997 + L1PB4 LINE L1 5652 5789 -367 2150 126 3 3 chr15 40739757 40740066 -44955688 + AluSg SINE Alu 1 309 -1 2737 148 21 58 chr15 40740066 40740452 -44955302 + L1PB4 LINE L1 5789 6153 -3 2737 167 31 58 chr15 40740452 40741376 -44954378 + L1PB4 LINE L1 4163 5110 -1046 2270 109 0 10 chr15 40741376 40741687 -44954067 + AluSq SINE Alu 4 311 -2 2737 167 31 58 chr15 40741687 40742109 -44953645 + L1PB4 LINE L1 5110 6153 -3 197 349 32 0 chr15 40742734 40742797 -44952957 - MIR SINE MIR -67 141 77 233 266 16 16 chr15 40743037 40743101 -44952653 - Charlie4 DNA MER1_type -4 1957 1894 3910 129 17 15 chr15 40743223 40743359 -44952395 - L1PA16 LINE L1 -5 6161 6027 2367 81 14 0 chr15 40743359 40743654 -44952100 - AluSq SINE Alu -14 299 1 3910 129 17 15 chr15 40743654 40744166 -44951588 - L1PA16 LINE L1 -139 6027 5512 1265 121 30 0 chr15 40744323 40744522 -44951232 - L1PA16 LINE L1 -649 5507 5303 475 113 0 0 chr15 40744523 40744594 -44951160 - AluSx SINE Alu -11 300 230 1117 137 6 55 chr15 40744595 40744778 -44950976 - AluSx SINE Alu -138 174 1 4384 201 63 25 chr15 40744779 40745867 -44949887 - L1 LINE L1 -835 5311 4182 1215 251 49 18 chr15 40745848 40746238 -44949516 - L1 LINE L1 -3370 2776 2375 * 1227 250 27 24 chr15 40746241 40746537 -44949217 + MER4B-int LTR ERV1 1985 2281 -4050 694 186 17 0 chr15 40746566 40746684 -44949070 - FLAM_C SINE Alu -19 124 5 343 119 0 127 chr15 40746686 40746763 -44948991 + MER4B-int LTR ERV1 2673 2726 -3220 391 164 0 15 chr15 40746814 40746881 -44948873 + MER34C LTR ERV1 160 225 -360 453 169 32 169 chr15 40746947 40747136 -44948618 + MER4B-int LTR ERV1 1190 1352 -3771 * 808 228 38 42 chr15 40747134 40747423 -44948331 + pTR5 LTR ERV1 741 1028 -1410 3749 150 27 65 chr15 40747504 40748217 -44947537 + LTR12 LTR ERV1 3 688 0 810 166 72 61 chr15 40748217 40748260 -44947494 + MER4B-int LTR ERV1 1993 2034 -4724 1904 150 3 10 chr15 40748260 40748560 -44947194 - AluSp SINE Alu -15 298 1 810 166 72 61 chr15 40748560 40748779 -44946975 + MER4B-int LTR ERV1 2034 2868 -3890 548 220 86 89 chr15 40748779 40749208 -44946546 + LTR28 LTR ERV1 1 486 -15 1972 206 63 22 chr15 40749484 40749975 -44945779 - MER9 LTR ERVK 0 511 1 444 146 55 55 chr15 40749983 40750093 -44945661 + MER4B-int LTR ERV1 3480 3589 -2742 2216 178 39 7 chr15 40750102 40750517 -44945237 + MSTA LTR MaLR 1 428 0 889 130 41 0 chr15 40750517 40750663 -44945091 + MSTA-int LTR MaLR 1 152 -1499 266 54 0 0 chr15 40750661 40750698 -44945056 + L1PB3 LINE L1 6112 6148 -6 * 3201 128 8 29 chr15 40750710 40751168 -44944586 + MER4B-int LTR ERV1 4227 4674 -2084 3251 93 9 13 chr15 40751168 40751619 -44944135 + LTR2 LTR ERV1 1 449 0 3201 128 8 29 chr15 40751619 40751682 -44944072 + MER4B-int LTR ERV1 4674 4737 -2021 591 78 99 205 chr15 40751685 40751896 -44943858 - LTR14A LTR ERVK -209 399 1 960 320 6 6 chr15 40751902 40752230 -44943524 - HERVKC4 LTR ERVK -7 5255 4928 200 149 0 95 chr15 40752438 40752512 -44943242 + (TTTTTG)n Simple_repeat Simple_repeat 5 71 0 9763 68 13 40 chr15 40752522 40753435 -44942319 - HERVK14 LTR ERVK -637 5308 4441 2320 81 3 3 chr15 40753435 40753730 -44942024 - AluY SINE Alu -16 295 1 9763 68 13 40 chr15 40753730 40754184 -44941570 - HERVK14 LTR ERVK -1504 4441 3977 11784 84 7 7 chr15 40754188 40755554 -44940200 - HERVK14 LTR ERVK -4392 1553 184 2292 88 0 3 chr15 40755554 40755879 -44939875 + AluY SINE Alu 1 324 0 11784 84 7 7 chr15 40755879 40756064 -44939690 - HERVK14 LTR ERVK -5760 185 1 2044 65 5 174 chr15 40756065 40756478 -44939276 - LTR14A LTR ERVK -1 343 1 2912 121 37 118 chr15 40756522 40757251 -44938503 + MER4B-int LTR ERV1 5282 5951 -807 1528 135 6 117 chr15 40757260 40757593 -44938161 - AluJo SINE Alu -16 296 1 978 245 35 19 chr15 40757595 40757856 -44937898 + MER4B-int LTR ERV1 6053 6317 -441 2779 123 40 15 chr15 40757856 40758311 -44937443 + MER50 LTR ERV1 1 466 -268 5027 66 25 0 chr15 40758451 40759091 -44936663 + SVA Other Other 730 1385 -1 23 33 0 0 chr15 40759091 40759121 -44936633 + AT_rich Low_complexity Low_complexity 1 30 0 4383 99 23 40 chr15 40759121 40759776 -44935978 + HSMAR1 DNA Mariner 644 1287 0 189 0 0 0 chr15 40760564 40760585 -44935169 + (TA)n Simple_repeat Simple_repeat 2 22 0 1653 91 0 9 chr15 40763253 40763472 -44932282 + AluSq SINE Alu 83 299 -14 219 36 0 0 chr15 40763813 40763841 -44931913 + (CCCTG)n Simple_repeat Simple_repeat 4 31 0 1839 101 105 22 chr15 40764788 40765098 -44930656 - AluSx SINE Alu 0 312 1 203 330 48 10 chr15 40765631 40765734 -44930020 + MIR SINE MIR 29 135 -73 21 36 0 0 chr15 40767236 40767264 -44928490 + AT_rich Low_complexity Low_complexity 1 28 0 1215 192 90 30 chr15 40767506 40767772 -44927982 + AluJo SINE Alu 1 282 -30 423 52 0 0 chr15 40767774 40767832 -44927922 + (TC)n Simple_repeat Simple_repeat 1 58 0 189 0 0 0 chr15 40767832 40767853 -44927901 + (TA)n Simple_repeat Simple_repeat 1 21 0 2470 161 26 2 chr15 40768330 40768746 -44927008 - MSTB LTR MaLR 0 426 1 189 195 0 0 chr15 40769157 40769198 -44926556 + (CATA)n Simple_repeat Simple_repeat 4 44 0 657 225 59 34 chr15 40770763 40770999 -44924755 + MIR SINE MIR 21 262 0 209 236 73 0 chr15 40771639 40771694 -44924060 + L2 LINE L2 3214 3272 0 189 0 0 0 chr15 40772510 40772531 -44923223 + (CAA)n Simple_repeat Simple_repeat 1 21 0 550 98 206 0 chr15 40773161 40773253 -44922501 - MER68 LTR ERV1 -451 111 1 557 151 0 0 chr15 40773627 40773720 -44922034 + AluJ/FLAM SINE Alu 2 94 -218 750 179 0 0 chr15 40773721 40773838 -44921916 + AluJo/FRAM SINE Alu 172 288 -24 4567 99 27 13 chr15 40774326 40774645 -44921109 + L1PA13 LINE L1 5459 5772 -391 189 107 0 0 chr15 40774645 40774673 -44921081 + (TA)n Simple_repeat Simple_repeat 1 28 0 4567 99 27 13 chr15 40774673 40775047 -44920707 + L1PA13 LINE L1 5772 6162 -1 5521 175 31 54 chr15 40776385 40776494 -44919260 + L1M4 LINE L1 3801 3911 -2235 2130 148 0 0 chr15 40776494 40776797 -44918957 - AluSx SINE Alu -9 303 1 5521 175 31 54 chr15 40776797 40778028 -44917726 + L1M4 LINE L1 3911 5110 -1036 32 0 0 0 chr15 40781834 40781866 -44913888 + AT_rich Low_complexity Low_complexity 1 32 0 180 77 0 0 chr15 40782657 40782683 -44913071 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 973 134 139 15 chr15 40783764 40783965 -44911789 - 7SLRNA srpRNA srpRNA 0 320 95 378 310 217 5 chr15 40784672 40784875 -44910879 - MIR SINE MIR -6 256 11 190 260 40 0 chr15 40786289 40786339 -44909415 - MIR SINE MIR -62 146 95 1909 139 10 3 chr15 40787226 40787529 -44908225 + AluJb SINE Alu 1 305 -7 265 288 63 19 chr15 40787654 40787761 -44907993 - MER5A DNA MER1_type -45 139 20 214 284 252 0 chr15 40788068 40788195 -44907559 - MIR3 SINE MIR -1 207 49 623 250 157 20 chr15 40788576 40788780 -44906974 - MIR SINE MIR -10 252 21 2422 99 71 0 chr15 40788785 40789137 -44906617 + MER51B LTR ERV1 1 377 0 386 292 50 17 chr15 40790705 40790825 -44904929 - L2 LINE L2 -3 3310 3187 436 317 71 27 chr15 40790831 40791014 -44904740 - MIR3 SINE MIR -9 199 9 190 250 0 0 chr15 40793381 40793425 -44902329 - MIR SINE MIR -58 150 107 196 224 103 17 chr15 40795948 40796006 -44899748 - L3 LINE CR1 -778 799 737 522 161 0 0 chr15 40796030 40796111 -44899643 + MER51A LTR ERV1 1 81 -553 28 0 0 0 chr15 40796236 40796264 -44899490 + AT_rich Low_complexity Low_complexity 1 28 0 1722 178 10 0 chr15 40796271 40796574 -44899180 + AluSx SINE Alu 1 306 -6 243 277 106 21 chr15 40796701 40796795 -44898959 - MER5A DNA MER1_type -48 141 40 184 250 0 0 chr15 40797162 40797202 -44898552 - L3b LINE CR1 -5 1578 1539 603 231 170 19 chr15 40797760 40797960 -44897794 - MIR SINE MIR -18 244 18 283 220 0 0 chr15 40798113 40798163 -44897591 + PABL_B LTR ERV1 1 50 -617 733 282 56 41 chr15 40798235 40798817 -44896937 + PABL_B LTR ERV1 72 667 0 240 187 13 67 chr15 40798833 40798854 -44896900 - L1MC4a LINE L1 -1853 5955 5934 365 0 22 0 chr15 40798854 40798899 -44896855 + (CA)n Simple_repeat Simple_repeat 2 47 0 240 187 13 67 chr15 40798899 40798952 -44896802 - L1MC4a LINE L1 -1874 5934 5885 196 200 109 18 chr15 40800172 40800227 -44895527 - L3 LINE CR1 -781 796 737 3458 148 55 17 chr15 40800251 40800846 -44894908 + MER51A LTR ERV1 1 618 -16 281 252 79 102 chr15 40800934 40801061 -44894693 - L2 LINE L2 -3 3310 3187 374 318 119 0 chr15 40801067 40801218 -44894536 - MIR3 SINE MIR -9 199 31 1907 159 45 124 chr15 40801765 40802422 -44893332 - LTR10E LTR ERV1 0 566 1 803 105 0 0 chr15 40803331 40803436 -44892318 - AluJb SINE Alu -207 105 1 2377 75 0 0 chr15 40804252 40804559 -44891195 + AluY SINE Alu 1 307 -4 1673 134 17 14 chr15 40804647 40804937 -44890817 + AluSx SINE Alu 1 291 -21 2096 125 0 0 chr15 40806061 40806356 -44889398 + AluSx SINE Alu 1 295 -17 460 251 48 32 chr15 40807093 40807252 -44888502 - MIR3 SINE MIR -64 144 5 390 227 64 35 chr15 40807438 40807579 -44888175 - MIR SINE MIR -70 192 48 3927 122 5 44 chr15 40808929 40809562 -44886192 - LTR14B LTR ERVK 0 608 1 214 189 0 0 chr15 40810364 40810401 -44885353 + (TATATG)n Simple_repeat Simple_repeat 4 40 0 941 168 7 7 chr15 40811113 40811268 -44884486 + MER5A DNA MER1_type 2 156 -33 1313 185 66 4 chr15 40812005 40812264 -44883490 + AluJo SINE Alu 1 275 -37 2163 93 3 7 chr15 40812353 40812653 -44883101 + AluSp SINE Alu 1 299 -14 1949 109 49 0 chr15 40812666 40812950 -44882804 + AluSx SINE Alu 1 298 -14 294 229 132 11 chr15 40813151 40813380 -44882374 + L1P5 LINE L1 5283 5555 -599 * 426 250 0 17 chr15 40813359 40813475 -44882279 + L1ME4a LINE L1 5532 5645 -476 933 234 77 29 chr15 40814281 40814634 -44881120 - L1MC4a LINE L1 -475 5827 5694 344 293 99 47 chr15 40814826 40815038 -44880716 + L1ME4a LINE L1 5895 6117 -4 596 190 9 17 chr15 40815162 40815278 -44880476 - FLAM_C SINE Alu -18 115 1 333 287 25 33 chr15 40815773 40815895 -44879859 + L2 LINE L2 2927 3047 -225 365 333 63 0 chr15 40815961 40816072 -44879682 - L2 LINE L2 -33 3239 3122 361 254 95 32 chr15 40817126 40817252 -44878502 + L2 LINE L2 3180 3313 0 1026 255 10 0 chr15 40817317 40817525 -44878229 - MER82 DNA MER2_type 0 653 444 331 338 61 30 chr15 40817557 40817755 -44877999 + MIR SINE MIR 2 205 -57 464 232 0 11 chr15 40817773 40817868 -44877886 - MER82 DNA MER2_type -559 94 1 706 181 0 31 chr15 40818460 40818473 -44877281 - FLAM_A SINE Alu -179 123 111 183 80 0 0 chr15 40818473 40818498 -44877256 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 706 181 0 31 chr15 40818498 40818611 -44877143 - FLAM_A SINE Alu -191 111 1 2807 65 8 3 chr15 40821151 40821503 -44874251 - THE1A LTR MaLR -1 354 1 2490 41 0 0 chr15 40822071 40822366 -44873388 + AluY SINE Alu 1 295 -16 1004 85 0 0 chr15 40822464 40822594 -44873160 - AluSq/x SINE Alu -183 130 1 1654 236 108 50 chr15 40822776 40823516 -44872238 - L1MC4a LINE L1 -1691 6100 5313 2118 112 0 3 chr15 40823516 40823820 -44871934 - AluSc SINE Alu -6 303 1 1654 236 108 50 chr15 40823820 40823839 -44871915 - L1MC4a LINE L1 -2478 5313 5297 551 304 132 28 chr15 40824274 40824699 -44871055 - L1MC4a LINE L1 -2975 3154 2686 847 266 103 40 chr15 40824739 40825516 -44870238 - L1M4 LINE L1 -3192 2954 2129 489 281 63 110 chr15 40825570 40825785 -44869969 - L1MC4a LINE L1 -4969 1150 926 1351 152 3 138 chr15 40825785 40826134 -44869620 - AluJo SINE Alu -10 302 1 489 281 63 110 chr15 40826134 40826537 -44869217 - L1MC4a LINE L1 -5193 926 561 1679 185 0 3 chr15 40828602 40828910 -44866844 + AluJb SINE Alu 6 312 0 230 161 0 36 chr15 40829706 40829762 -44865992 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 1128 105 0 0 chr15 40829951 40830104 -44865650 + AluSp/q SINE Alu 159 311 -2 607 301 67 53 chr15 40830285 40830644 -44865110 - L3 LINE CR1 -177 1400 1037 7763 95 18 3 chr15 40831186 40832306 -44863448 - L1P LINE L1 -2936 3210 2074 * 11090 70 22 0 chr15 40832304 40833774 -44861980 + L1P LINE L1 3865 5367 -779 1193 71 0 0 chr15 40833776 40833917 -44861837 - AluSg SINE Alu -169 141 1 1668 189 126 36 chr15 40834545 40834989 -44860765 - LTR2B LTR ERV1 0 490 7 2020 119 65 3 chr15 40835264 40835558 -44860196 - AluSx SINE Alu 0 312 1 2584 68 126 8 chr15 40835817 40836213 -44859541 + LTR7 LTR ERV1 1 443 -7 1607 185 7 14 chr15 40837164 40837461 -44858293 - AluJo SINE Alu -17 295 1 540 118 0 0 chr15 40837585 40837674 -44858080 - AluSg/x SINE Alu 0 304 216 813 141 21 120 chr15 40837928 40837999 -44857755 + MER5A DNA MER1_type 16 92 -97 1641 134 130 0 chr15 40837999 40838275 -44857479 + AluSx SINE Alu 1 312 0 813 141 21 120 chr15 40838275 40838395 -44857359 + MER5A DNA MER1_type 92 188 -1 644 240 91 66 chr15 40839221 40839463 -44856291 + MIR SINE MIR 5 252 -10 306 295 82 0 chr15 40839547 40839669 -44856085 - MER112 DNA MER1_type -121 139 8 1059 58 7 0 chr15 40839690 40839827 -44855927 + L1PA13 LINE L1 6026 6163 0 1067 146 23 6 chr15 40839832 40840003 -44855751 + AluJo SINE Alu 118 291 -21 402 217 94 14 chr15 40841001 40841139 -44854615 - MER53 DNA DNA -40 149 1 256 188 42 0 chr15 40841147 40841195 -44854559 - MIR SINE MIR -156 106 57 289 213 13 40 chr15 40842001 40842076 -44853678 - MIR SINE MIR -85 177 105 21 0 0 0 chr15 40842114 40842135 -44853619 + AT_rich Low_complexity Low_complexity 1 21 0 2268 131 16 22 chr15 40843293 40843660 -44852094 - L1MB2 LINE L1 -228 5943 5579 1804 192 43 3 chr15 40843655 40844004 -44851750 - L1MB8 LINE L1 -346 5832 5470 * 352 234 54 71 chr15 40844106 40844215 -44851539 + L1MC4 LINE L1 7492 7598 -444 2211 114 7 0 chr15 40844215 40844522 -44851232 + AluSg SINE Alu 1 309 -1 352 234 54 71 chr15 40844522 40844596 -44851158 + L1MC4 LINE L1 7598 7672 -370 288 286 31 0 chr15 40844634 40844739 -44851015 + L1MC4 LINE L1 7807 8005 -37 2274 92 0 0 chr15 40845241 40845525 -44850229 + AluSx SINE Alu 1 284 -28 297 75 0 0 chr15 40845592 40845632 -44850122 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 1126 281 131 60 chr15 40846938 40847739 -44848015 - L3 LINE CR1 -57 1520 663 295 241 13 38 chr15 40847692 40847771 -44847983 - L2 LINE L2 -1 3312 3236 * 188 222 22 0 chr15 40847936 40847981 -44847773 - L3 LINE CR1 -1102 475 430 2227 65 65 7 chr15 40848012 40848304 -44847450 + AluY SINE Alu 2 310 -1 815 248 85 104 chr15 40848336 40849223 -44846531 + L1MD3 LINE L1 6180 6968 -840 14561 141 24 12 chr15 40849229 40852793 -44842961 + L1MA1 LINE L1 2697 6302 0 541 273 92 20 chr15 40852812 40853061 -44842693 + L1MC4 LINE L1 7120 7386 -656 3135 221 37 21 chr15 40853061 40853719 -44842035 + L1ME1 LINE L1 5429 6102 -64 2021 105 24 24 chr15 40853719 40853852 -44841902 + AluSq SINE Alu 6 138 -175 1727 118 76 8 chr15 40853852 40854146 -44841608 + AluSx SINE Alu 1 312 0 2021 105 24 24 chr15 40854146 40854305 -44841449 + AluSq SINE Alu 137 299 -14 3135 221 37 21 chr15 40854305 40854367 -44841387 + L1ME1 LINE L1 6102 6161 -5 1438 244 80 65 chr15 40854356 40855033 -44840721 + L1MC4 LINE L1 7355 8041 -1 * 672 290 98 35 chr15 40855327 40855845 -44839909 + L1M4 LINE L1 2475 3025 -3121 326 221 120 25 chr15 40856258 40856416 -44839338 + L1ME3A LINE L1 5779 5951 -219 518 61 0 192 chr15 40856729 40856828 -44838926 - MADE1 DNA Mariner 0 80 1 2216 102 0 14 chr15 40856887 40857182 -44838572 + AluSg SINE Alu 3 293 -17 180 175 48 0 chr15 40857477 40857540 -44838214 + (TA)n Simple_repeat Simple_repeat 1 66 0 303 174 10 102 chr15 40857558 40857656 -44838098 + L1MC4 LINE L1 6615 6703 -1339 2347 75 10 0 chr15 40858281 40858405 -44837349 + AluY SINE Alu 1 122 -189 297 0 0 0 chr15 40858405 40858438 -44837316 + (CA)n Simple_repeat Simple_repeat 2 34 0 2347 75 10 0 chr15 40858438 40858607 -44837147 + AluY SINE Alu 122 297 -14 727 250 103 38 chr15 40858676 40858968 -44836786 - LTR16A1 LTR ERVL 0 457 147 183 191 64 21 chr15 40859977 40860024 -44835730 - L3 LINE CR1 -258 1319 1271 355 70 333 0 chr15 40860237 40860294 -44835460 + MADE1 DNA Mariner 5 80 0 2343 76 10 13 chr15 40860445 40860578 -44835176 + AluSg SINE Alu 1 133 -177 2282 103 0 3 chr15 40860578 40860880 -44834874 + AluSg SINE Alu 1 301 -9 2343 76 10 13 chr15 40860880 40861047 -44834707 + AluSg SINE Alu 133 300 -10 2083 122 17 0 chr15 40861060 40861347 -44834407 + AluSx SINE Alu 3 294 -18 506 242 37 19 chr15 40861732 40861893 -44833861 + MER103 DNA DNA 1 164 -2 1522 152 0 109 chr15 40861980 40862310 -44833444 - AluJb SINE Alu -18 294 1 444 265 99 6 chr15 40862630 40862792 -44832962 - LTR33A LTR ERVL -39 484 308 2170 117 3 0 chr15 40863186 40863493 -44832261 - AluSx SINE Alu -4 308 1 805 200 115 11 chr15 40864160 40864420 -44831334 - MER5C DNA MER1_type 0 324 38 262 238 25 12 chr15 40864458 40864538 -44831216 + MER103 DNA DNA 38 118 -48 235 214 29 0 chr15 40864779 40864849 -44830905 + GA-rich Low_complexity Low_complexity 2 73 0 331 264 155 0 chr15 40865474 40865603 -44830151 + MIR3 SINE MIR 33 181 -27 524 200 19 0 chr15 40866067 40866172 -44829582 + MER5A DNA MER1_type 6 112 -77 256 380 33 8 chr15 40866651 40866772 -44828982 + MIR SINE MIR 31 154 -108 1832 164 7 0 chr15 40867488 40867781 -44827973 - AluSx SINE Alu -17 295 1 2227 88 14 0 chr15 40867986 40868296 -44827458 - AluSp SINE Alu 0 314 1 201 296 0 0 chr15 40868432 40868476 -44827278 - MER91 DNA MER1_type -83 57 14 2393 92 0 0 chr15 40868538 40868841 -44826913 - AluSx SINE Alu -9 303 1 2162 95 3 3 chr15 40870000 40870284 -44825470 + AluSc SINE Alu 14 297 -12 2375 110 0 0 chr15 40870401 40870711 -44825043 + AluSg SINE Alu 1 310 0 9811 25 0 221 chr15 40870934 40872711 -44823043 - SVA Other Other -1 1385 1 215 0 0 62 chr15 40872713 40872745 -44823009 + (AGGGGG)n Simple_repeat Simple_repeat 6 35 0 12642 126 15 4 chr15 40873145 40875032 -44820722 - L1M1 LINE L1 -4502 3063 1155 371 257 86 18 chr15 40875032 40875218 -44820536 + LTR33A LTR ERVL 301 469 -54 811 189 0 0 chr15 40875224 40875356 -44820398 + AluJo/FLAM SINE Alu 2 133 -169 1426 106 0 0 chr15 40875359 40875538 -44820216 + AluSg SINE Alu 1 179 -131 1167 88 0 0 chr15 40875601 40875749 -44820005 + AluSc SINE Alu 144 291 -18 992 103 0 139 chr15 40875749 40875943 -44819811 + AluSg/x SINE Alu 134 300 -12 250 343 51 26 chr15 40875978 40876095 -44819659 - MIR SINE MIR -93 115 5 261 0 0 0 chr15 40876784 40876813 -44818941 + (CA)n Simple_repeat Simple_repeat 1 29 0 1669 159 33 7 chr15 40877016 40877286 -44818468 + AluJo SINE Alu 15 291 -21 268 292 50 17 chr15 40877310 40877430 -44818324 - L1ME4a LINE L1 -57 6064 5941 1679 183 85 25 chr15 40877905 40878271 -44817483 - MSTD LTR MaLR 0 396 9 386 218 36 36 chr15 40878255 40878365 -44817389 - LTR33 LTR ERVL -28 493 384 * 2170 87 42 3 chr15 40878639 40878927 -44816827 - AluSx SINE Alu -13 299 1 323 223 87 48 chr15 40880080 40880183 -44815571 + L1MC4 LINE L1 6595 6701 -1341 1555 225 63 33 chr15 40880184 40880360 -44815394 - L1MC4 LINE L1 -124 7918 7749 2094 109 3 0 chr15 40880360 40880644 -44815110 + AluSg SINE Alu 1 285 -25 560 62 12 0 chr15 40880645 40880726 -44815028 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 1555 225 63 33 chr15 40880726 40881005 -44814749 - L1MC4 LINE L1 -292 7750 7447 2426 67 0 0 chr15 40881678 40881978 -44813776 + AluY SINE Alu 1 300 -11 1883 170 3 0 chr15 40881986 40882297 -44813457 + AluJo SINE Alu 1 312 0 244 232 81 50 chr15 40882677 40882776 -44812978 - LTR33A LTR ERVL -362 161 60 183 156 0 0 chr15 40883375 40883407 -44812347 + A-rich Low_complexity Low_complexity 2 33 0 285 209 0 0 chr15 40884397 40884464 -44811290 + (CA)n Simple_repeat Simple_repeat 1 67 0 203 218 88 82 chr15 40884596 40884743 -44811011 - L2 LINE L2 -452 2862 2715 207 0 0 0 chr15 40884851 40884874 -44810880 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2261 92 0 3 chr15 40884879 40885185 -44810569 + AluSg SINE Alu 3 307 -3 1151 228 23 99 chr15 40885464 40885898 -44809856 - MLT1J LTR MaLR -2 509 109 1472 171 113 16 chr15 40886170 40886428 -44809326 - MER58B DNA MER1_type -2081 339 45 2066 123 3 28 chr15 40886428 40886745 -44809009 + AluSx SINE Alu 3 311 -1 1472 171 113 16 chr15 40886745 40886795 -44808959 - MER58B DNA MER1_type -2375 45 1 525 211 79 0 chr15 40886891 40887005 -44808749 - MIR SINE MIR -77 185 63 745 264 129 0 chr15 40887155 40887356 -44808398 + MIR SINE MIR 8 234 -28 359 229 19 48 chr15 40887830 40887935 -44807819 - MER5A DNA MER1_type -15 174 73 251 211 42 28 chr15 40887935 40887951 -44807803 - Charlie1 DNA MER1_type -396 2365 2351 1937 172 47 5 chr15 40887951 40888334 -44807420 - L1MD2 LINE L1 -1 6358 5960 251 211 42 28 chr15 40888334 40888388 -44807366 - Charlie1 DNA MER1_type -410 2351 2294 1515 180 7 30 chr15 40888413 40888708 -44807046 - AluJo SINE Alu -24 288 1 1789 189 43 18 chr15 40888732 40889128 -44806626 - L1MA9 LINE L1 -247 6065 5660 297 238 0 0 chr15 40889128 40889191 -44806563 + MER5A DNA MER1_type 124 186 -3 2311 75 0 16 chr15 40889197 40889505 -44806249 + AluY SINE Alu 1 303 -8 2203 95 0 0 chr15 40890469 40890763 -44804991 + AluSx SINE Alu 1 294 -18 2123 117 27 0 chr15 40891381 40891681 -44804073 + AluSx SINE Alu 1 308 -4 595 258 121 17 chr15 40891846 40892160 -44803594 + L1MC/D LINE L1 5372 5725 -468 569 314 37 5 chr15 40892162 40892249 -44803505 + MIR SINE MIR 58 141 -121 288 53 0 0 chr15 40892249 40892287 -44803467 + (CA)n Simple_repeat Simple_repeat 1 38 0 569 314 37 5 chr15 40892287 40892390 -44803364 + MIR SINE MIR 141 254 -8 2049 95 51 0 chr15 40893469 40893763 -44801991 - AluSq SINE Alu -4 309 1 238 319 106 9 chr15 40893859 40893972 -44801782 + MIR SINE MIR 17 140 -68 252 259 127 62 chr15 40894652 40894796 -44800958 + MIR3 SINE MIR 15 183 -41 323 167 71 36 chr15 40895003 40895087 -44800667 - MIR3 SINE MIR -10 198 112 216 0 0 0 chr15 40895170 40895194 -44800560 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1666 145 29 7 chr15 40895197 40895473 -44800281 - AluSx SINE Alu -30 282 1 234 270 14 14 chr15 40895890 40895964 -44799790 + (CATATA)n Simple_repeat Simple_repeat 3 76 0 415 200 64 32 chr15 40896249 40896374 -44799380 - MIR SINE MIR -7 255 127 2228 115 0 0 chr15 40896599 40896904 -44798850 + AluSq SINE Alu 1 305 -8 370 294 115 20 chr15 40897331 40897583 -44798171 + L1MC4a LINE L1 5667 5942 -1866 370 295 131 68 chr15 40897810 40898176 -44797578 + L2 LINE L2 2921 3309 -4 42 20 0 0 chr15 40898235 40898284 -44797470 + AT_rich Low_complexity Low_complexity 1 49 0 1736 152 51 0 chr15 40898314 40898610 -44797144 - AluSx SINE Alu -1 311 1 853 201 0 12 chr15 40898616 40898780 -44796974 - AluJo SINE Alu -4 298 137 524 335 99 11 chr15 40898783 40899055 -44796699 - L3 LINE CR1 -110 1467 1172 271 280 194 40 chr15 40899157 40899332 -44796422 - L3 LINE CR1 -426 1151 950 1017 164 11 0 chr15 40900410 40900587 -44795167 - AluJo SINE Alu -14 298 120 820 165 8 0 chr15 40901863 40901996 -44793758 - AluJo SINE Alu -175 137 4 2223 65 3 36 chr15 40902691 40902997 -44792757 - AluSc SINE Alu -7 302 7 1388 160 0 4 chr15 40903156 40903393 -44792361 - AluJo SINE Alu -12 300 65 957 180 0 12 chr15 40903516 40903677 -44792077 + FRAM SINE Alu 1 159 -7 1942 136 10 7 chr15 40904081 40904391 -44791363 + AluSx SINE Alu 1 311 -1 935 247 121 50 chr15 40904550 40904670 -44791084 - LTR33A LTR ERVL 0 523 413 1936 154 80 3 chr15 40904670 40905008 -44790746 + THE1B LTR MaLR 1 364 0 935 247 121 50 chr15 40905008 40905251 -44790503 - LTR33A LTR ERVL -110 413 134 991 242 0 45 chr15 40905271 40905535 -44790219 + L1PBa LINE L1 1102 1353 -5510 329 311 46 20 chr15 40905539 40905690 -44790064 - LTR33 LTR ERVL -365 156 2 310 262 48 12 chr15 40905766 40905850 -44789904 - MIR SINE MIR -104 158 72 1678 198 90 42 chr15 40906509 40906662 -44789092 + L1MB8 LINE L1 5716 5860 -318 2177 93 0 0 chr15 40906662 40906951 -44788803 + AluSc SINE Alu 19 307 -2 1678 198 90 42 chr15 40906951 40907231 -44788523 + L1MB8 LINE L1 5860 6170 -8 1724 166 0 7 chr15 40907232 40907528 -44788226 - AluJb SINE Alu -18 294 1 31 26 0 0 chr15 40907528 40907566 -44788188 + AT_rich Low_complexity Low_complexity 1 38 0 489 363 6 6 chr15 40907915 40908086 -44787668 + L2 LINE L2 3099 3269 -3 1560 166 0 72 chr15 40908086 40908430 -44787324 - AluJb SINE Alu 0 312 1 213 240 301 34 chr15 40908526 40908672 -44787082 - MIR SINE MIR -50 212 28 1222 137 73 6 chr15 40908710 40908967 -44786787 - Tigger5 DNA MER2_type -1 2322 77 225 235 0 20 chr15 40909000 40909051 -44786703 + Tigger5 DNA MER2_type 1 50 -2273 * 319 269 0 0 chr15 40909046 40909113 -44786641 - Tigger5 DNA MER2_type -2256 67 1 474 151 0 0 chr15 40909323 40909396 -44786358 - AluJ/FLAM SINE Alu -224 88 16 * 558 165 0 0 chr15 40909393 40909490 -44786264 + AluSg/x SINE Alu 208 304 -6 1722 126 19 0 chr15 40909971 40910084 -44785670 + AluSx SINE Alu 16 125 -190 245 50 0 25 chr15 40910084 40910124 -44785630 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 1722 126 19 0 chr15 40910124 40910305 -44785449 + AluSx SINE Alu 125 315 0 3196 144 69 6 chr15 40910544 40911066 -44784688 - MER21A LTR ERV1 -1 930 376 1126 148 94 0 chr15 40911068 40911267 -44784487 - MER21A LTR ERV1 -663 268 51 3196 62 5 0 chr15 40911267 40911652 -44784102 + MLT2A1 LTR ERVL 2 388 -56 352 138 35 0 chr15 40911658 40911716 -44784038 - MER21A LTR ERV1 -871 60 1 1794 223 52 33 chr15 40912300 40912561 -44783193 + MLT1F LTR MaLR 113 387 -155 2166 81 32 0 chr15 40912561 40912845 -44782909 + AluSg SINE Alu 2 294 -16 1794 223 52 33 chr15 40912845 40913005 -44782749 + MLT1F LTR MaLR 387 542 0 185 291 47 23 chr15 40913180 40913266 -44782488 + L2 LINE L2 1787 1874 -1440 1822 130 0 57 chr15 40913365 40913680 -44782074 + AluSx SINE Alu 1 297 -15 617 172 33 16 chr15 40914034 40914156 -44781598 - AluJb SINE Alu -187 125 2 48 32 0 0 chr15 40914217 40914279 -44781475 + AT_rich Low_complexity Low_complexity 1 62 0 25 0 0 0 chr15 40915005 40915030 -44780724 + AT_rich Low_complexity Low_complexity 1 25 0 1209 124 31 31 chr15 40915119 40915280 -44780474 - L1MA7 LINE L1 -10 6281 6118 1985 141 3 0 chr15 40915280 40915578 -44780176 + AluJb SINE Alu 1 299 -13 1209 124 31 31 chr15 40915578 40915642 -44780112 - L1MA7 LINE L1 -172 6119 6056 21 0 0 0 chr15 40915683 40915704 -44780050 + AT_rich Low_complexity Low_complexity 1 21 0 2222 87 3 0 chr15 40915713 40916027 -44779727 + AluSq SINE Alu 1 315 0 1792 144 0 37 chr15 40916058 40916356 -44779398 + AluSx SINE Alu 1 287 -25 949 193 6 0 chr15 40916375 40916546 -44779208 + FAM SINE Alu 1 172 -3 2302 72 3 10 chr15 40916546 40916851 -44778903 + AluY SINE Alu 1 303 -8 278 298 24 12 chr15 40916948 40917032 -44778722 + L2 LINE L2 3212 3296 -17 586 265 118 12 chr15 40917033 40917258 -44778496 - L1M4 LINE L1 -333 5788 5562 186 43 0 0 chr15 40917302 40917325 -44778429 + (A)n Simple_repeat Simple_repeat 1 23 0 704 126 0 68 chr15 40917962 40918153 -44777601 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 232 186 14 14 chr15 40918155 40918225 -44777529 + GA-rich Low_complexity Low_complexity 2 71 0 287 235 143 25 chr15 40918252 40918371 -44777383 + MIR3 SINE MIR 68 200 -8 1096 147 66 5 chr15 40918968 40919166 -44776588 + AluJb SINE Alu 87 296 -16 356 263 26 136 chr15 40919824 40919979 -44775775 - LTR16A LTR ERVL -15 435 311 2251 101 0 0 chr15 40919979 40920286 -44775468 + AluSg SINE Alu 2 308 -2 356 263 26 136 chr15 40920286 40920358 -44775396 - LTR16A LTR ERVL -139 311 233 2006 96 11 4 chr15 40920755 40921058 -44774696 - AluSx SINE Alu 0 305 1 407 265 68 17 chr15 40921059 40921176 -44774578 - MIR SINE MIR -56 152 30 207 254 79 105 chr15 40921681 40921844 -44773910 + MER5A DNA MER1_type 5 160 -18 2196 112 3 0 chr15 40922444 40922748 -44773006 + AluSx SINE Alu 5 309 -3 861 248 108 49 chr15 40922817 40923568 -44772186 + L1MC5 LINE L1 7258 7929 -32 1911 132 0 3 chr15 40923576 40923865 -44771889 + AluSx SINE Alu 1 288 -24 212 202 58 125 chr15 40924642 40924746 -44771008 + L2 LINE L2 3209 3305 -8 22 35 0 0 chr15 40925007 40925036 -44770718 + AT_rich Low_complexity Low_complexity 1 29 0 1908 153 3 10 chr15 40925678 40925992 -44769762 - AluSx SINE Alu 0 312 1 189 0 0 0 chr15 40926004 40926025 -44769729 + (A)n Simple_repeat Simple_repeat 1 21 0 697 207 0 0 chr15 40926025 40926141 -44769613 - FLAM_C SINE Alu -26 117 2 240 278 111 56 chr15 40927750 40927858 -44767896 - L2 LINE L2 -5 3308 3195 1513 162 18 11 chr15 40928714 40928998 -44766756 - AluJo SINE Alu -8 304 19 31 58 0 0 chr15 40929745 40929797 -44765957 + GC_rich Low_complexity Low_complexity 1 52 0 213 200 0 0 chr15 40929879 40929924 -44765830 + (CGG)n Simple_repeat Simple_repeat 1 45 0 1478 80 0 0 chr15 40933200 40933387 -44762367 - AluSx SINE Alu -125 187 1 180 198 0 128 chr15 40934244 40934330 -44761424 - MER5C DNA MER1_type -27 297 223 597 307 117 39 chr15 40934590 40935052 -44760702 + L1MC/D LINE L1 5307 5804 -2004 21 36 0 0 chr15 40935069 40935097 -44760657 + AT_rich Low_complexity Low_complexity 1 28 0 1939 126 20 0 chr15 40935143 40935445 -44760309 - AluSx SINE Alu -4 308 1 1790 145 48 0 chr15 40936026 40936316 -44759438 - AluSx SINE Alu -8 304 1 1589 159 6 37 chr15 40936554 40936875 -44758879 - AluJo SINE Alu -1 311 1 600 240 87 0 chr15 40936995 40937145 -44758609 - MER5A DNA MER1_type 0 189 27 2395 95 3 45 chr15 40937368 40937725 -44758029 + THE1C LTR MaLR 1 342 -33 9047 98 86 68 chr15 40937734 40939287 -44756467 + THE1C-int LTR MaLR 1 1580 0 2320 93 65 8 chr15 40939287 40939642 -44756112 + THE1C LTR MaLR 1 375 0 1686 154 0 0 chr15 40940122 40940389 -44755365 - AluSx SINE Alu -9 303 37 379 107 0 0 chr15 40940598 40940654 -44755100 - Alu SINE Alu -1 301 246 203 195 24 0 chr15 40940826 40940867 -44754887 + MER5B DNA MER1_type 1 42 -136 * 494 163 61 20 chr15 40940860 40940958 -44754796 - MER5B DNA MER1_type -75 103 2 * 822 245 69 0 chr15 40940958 40941170 -44754584 + L2 LINE L2 584 810 -2504 824 169 99 29 chr15 40941186 40941358 -44754396 + MER20 DNA MER1_type 36 219 0 466 270 68 0 chr15 40941435 40941583 -44754171 + MER112 DNA MER1_type 92 249 -11 1382 256 284 28 chr15 40941591 40942269 -44753485 + L2 LINE L2 805 1308 -2006 1894 112 77 0 chr15 40942269 40942556 -44753198 + AluSg SINE Alu 1 309 -1 1382 256 284 28 chr15 40942556 40942714 -44753040 + L2 LINE L2 1308 1856 -1458 734 139 98 0 chr15 40942716 40942838 -44752916 - AluJb SINE Alu -174 138 5 347 271 162 20 chr15 40942841 40943088 -44752666 + L2 LINE L2 1873 2154 -1160 * 451 310 108 19 chr15 40943073 40943341 -44752413 + L2 LINE L2 3020 3311 -2 298 308 26 51 chr15 40944492 40944609 -44751145 + MER5B DNA MER1_type 3 116 -62 937 164 64 20 chr15 40945417 40945623 -44750131 - MLT1B LTR MaLR 0 467 196 2300 190 22 28 chr15 40945623 40946086 -44749668 - MER66B LTR ERV1 0 486 27 940 181 26 48 chr15 40946076 40946303 -44749451 - MLT1B LTR MaLR -168 222 1 * 288 280 95 36 chr15 40946655 40946823 -44748931 + MER5B DNA MER1_type 1 178 0 1775 145 7 24 chr15 40946944 40947263 -44748491 + AluSq SINE Alu 1 313 0 414 242 220 8 chr15 40947619 40947751 -44748003 - MER5A DNA MER1_type -21 168 9 248 260 0 0 chr15 40947966 40948016 -44747738 + MER5A DNA MER1_type 4 53 -136 829 146 0 14 chr15 40948113 40948257 -44747497 - FLAM_C SINE Alu -1 142 1 186 43 0 0 chr15 40948263 40948286 -44747468 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1263 175 45 26 chr15 40948296 40948565 -44747189 - AluJb SINE Alu -33 279 6 2414 76 0 0 chr15 40949259 40949563 -44746191 + AluSg SINE Alu 1 304 -6 371 168 18 0 chr15 40949677 40949764 -44745990 + L1ME1 LINE L1 6088 6184 0 289 259 69 43 chr15 40950069 40950185 -44745569 - MIR SINE MIR -74 134 16 229 260 0 27 chr15 40950357 40950430 -44745324 - L2 LINE L2 -52 3261 3191 461 249 37 7 chr15 40950526 40950688 -44745066 + MIR SINE MIR 70 236 -26 495 0 0 0 chr15 40950726 40950781 -44744973 + (TG)n Simple_repeat Simple_repeat 2 56 0 472 275 174 7 chr15 40951399 40951548 -44744206 + MER5A DNA MER1_type 10 183 -6 218 232 18 36 chr15 40951637 40951693 -44744061 - MIR SINE MIR -187 75 21 289 294 40 40 chr15 40952508 40952634 -44743120 - MIR3 SINE MIR -78 130 5 5738 65 4 19 chr15 40953659 40953737 -44742017 + L1PA6 LINE L1 5414 5492 -662 2081 78 4 7 chr15 40953737 40954046 -44741708 + AluY SINE Alu 1 308 0 5738 65 4 19 chr15 40954046 40954718 -44741036 + L1PA6 LINE L1 5492 6154 0 216 86 0 0 chr15 40955237 40955272 -44740482 + (T)n Simple_repeat Simple_repeat 1 35 0 1311 138 0 27 chr15 40956470 40956694 -44739060 - MER20 DNA MER1_type -1 218 1 2034 102 28 0 chr15 40957542 40957825 -44737929 + AluSx SINE Alu 1 291 -21 56 0 0 0 chr15 40958233 40958289 -44737465 + AT_rich Low_complexity Low_complexity 1 56 0 2431 72 0 0 chr15 40958594 40958901 -44736853 + AluY SINE Alu 1 307 -4 189 132 0 0 chr15 40960048 40960086 -44735668 + (TG)n Simple_repeat Simple_repeat 1 38 0 1659 144 27 30 chr15 40961191 40961490 -44734264 + AluJb SINE Alu 1 298 -14 188 340 145 33 chr15 40962313 40962616 -44733138 + L2 LINE L2 2921 3257 -15 1868 122 7 4 chr15 40963942 40964221 -44731533 + AluSq SINE Alu 1 280 -33 186 43 0 0 chr15 40964225 40964248 -44731506 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1568 159 35 28 chr15 40964491 40964780 -44730974 + AluJo SINE Alu 1 291 -21 271 340 67 27 chr15 40965431 40965581 -44730173 - MIR3 SINE MIR -5 203 48 343 277 50 8 chr15 40966067 40966186 -44729568 + MIR3 SINE MIR 54 177 -31 360 304 138 22 chr15 40966830 40967054 -44728700 + L2 LINE L2 2847 3096 -176 329 226 0 0 chr15 40967147 40967209 -44728545 - L2 LINE L2 0 3313 3252 481 129 276 0 chr15 40967324 40967440 -44728314 - MER5A DNA MER1_type -35 154 7 265 302 139 51 chr15 40968177 40968392 -44727362 - MIR SINE MIR -9 253 20 215 247 136 12 chr15 40969293 40969374 -44726380 + MIR SINE MIR 33 123 -85 330 266 186 0 chr15 40969581 40969597 -44726157 + L2 LINE L2 3121 3133 -139 2062 110 3 31 chr15 40969597 40969916 -44725838 - AluSx SINE Alu -2 310 1 330 266 186 0 chr15 40969916 40970023 -44725731 + L2 LINE L2 3133 3267 -5 2013 108 0 35 chr15 40970341 40970655 -44725099 - AluSx SINE Alu -9 303 1 1449 178 107 0 chr15 40971521 40971791 -44723963 - AluJo SINE Alu -3 299 1 24 53 0 0 chr15 40971801 40971839 -44723915 + AT_rich Low_complexity Low_complexity 1 38 0 2222 91 16 0 chr15 40971916 40972223 -44723531 - AluSx SINE Alu 0 312 1 2225 88 7 3 chr15 40972451 40972756 -44722998 + AluSp SINE Alu 1 306 -7 2289 67 3 7 chr15 40974555 40974855 -44720899 - AluSg SINE Alu -11 299 1 1825 186 98 34 chr15 40974983 40975424 -44720330 - MLT1D LTR MaLR -4 501 33 1648 218 58 113 chr15 40976111 40976830 -44718924 - L1MC4 LINE L1 -5 8037 7358 482 279 92 48 chr15 40977241 40977470 -44718284 - L1MC4 LINE L1 0 8042 7804 948 253 36 74 chr15 40977587 40977979 -44717775 - L1MC4 LINE L1 -316 7726 7350 827 154 0 0 chr15 40978823 40978953 -44716801 + AluJo SINE Alu 2 131 -171 1441 86 131 5 chr15 40978956 40979201 -44716553 + AluY SINE Alu 35 307 0 1058 141 0 24 chr15 40979204 40979374 -44716380 + AluJo SINE Alu 137 302 0 2160 107 0 0 chr15 40980153 40980451 -44715303 + AluSg SINE Alu 1 298 -12 1788 240 119 10 chr15 40980838 40981333 -44714421 + MLT1F1 LTR MaLR 3 551 -16 2479 134 133 61 chr15 40982131 40982310 -44713444 - MER4A LTR ERV1 -2 598 433 2314 100 0 17 chr15 40982310 40982609 -44713145 + AluSx SINE Alu 1 294 -18 2479 134 133 61 chr15 40982609 40982622 -44713132 - MER4A LTR ERV1 -167 433 422 405 0 0 0 chr15 40982622 40982667 -44713087 + (CA)n Simple_repeat Simple_repeat 2 46 0 2479 134 133 61 chr15 40982667 40983031 -44712723 - MER4A LTR ERV1 -178 422 1 24 0 0 0 chr15 40983365 40983389 -44712365 + AT_rich Low_complexity Low_complexity 1 24 0 900 48 0 0 chr15 40983440 40983543 -44712211 + AluYb8 SINE Alu 1 103 -215 2080 94 50 3 chr15 40983547 40983844 -44711910 + AluY SINE Alu 1 311 0 293 298 46 15 chr15 40984535 40984666 -44711088 + MIR SINE MIR 48 182 -80 2251 110 0 0 chr15 40984889 40985181 -44710573 - AluSx SINE Alu -20 292 1 188 33 0 33 chr15 40987218 40987248 -44708506 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 203 293 38 47 chr15 40987580 40987686 -44708068 - MER5A DNA MER1_type -2 187 83 251 319 64 0 chr15 40987761 40987855 -44707899 + MER5A DNA MER1_type 7 106 -83 280 322 0 23 chr15 40988391 40988478 -44707276 + L2 LINE L2 3229 3313 0 563 119 18 13 chr15 40989236 40989454 -44706300 + AluJb SINE Alu 1 312 0 1816 146 28 3 chr15 40990450 40990737 -44705017 + AluJb SINE Alu 14 307 -5 2224 102 3 10 chr15 40990871 40991174 -44704580 - AluSp SINE Alu -12 301 1 228 86 0 0 chr15 40991197 40991232 -44704522 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2119 130 0 7 chr15 40991326 40991633 -44704121 + AluSx SINE Alu 1 305 -7 229 191 83 0 chr15 40994430 40994514 -44701240 - L1ME4a LINE L1 -2 6119 6029 2433 189 21 25 chr15 40995449 40995977 -44699777 + L1M4 LINE L1 4497 5022 -1124 261 0 0 0 chr15 40996089 40996118 -44699636 + (TG)n Simple_repeat Simple_repeat 1 29 0 249 33 0 0 chr15 40996117 40996147 -44699607 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 2354 70 0 7 chr15 40996218 40996527 -44699227 - AluSg SINE Alu 0 307 1 363 306 0 8 chr15 40997246 40997370 -44698384 - L2 LINE L2 0 3313 3191 21 0 0 0 chr15 40998167 40998188 -44697566 + AT_rich Low_complexity Low_complexity 1 21 0 2339 68 0 4 chr15 40999484 40999785 -44695969 - AluSg SINE Alu 0 300 1 714 266 115 13 chr15 41000207 41000433 -44695321 - MIR SINE MIR -11 251 3 261 286 144 7 chr15 41001579 41001718 -44694036 + MIR SINE MIR 43 191 -65 295 253 116 34 chr15 41004848 41004994 -44690760 + MIR SINE MIR 93 250 -12 204 341 0 12 chr15 41006300 41006385 -44689369 + MIR3 SINE MIR 110 193 -15 756 204 36 12 chr15 41006518 41006685 -44689069 - L1ME4a LINE L1 -290 5880 5710 312 263 25 0 chr15 41007334 41007414 -44688340 - MIR3 SINE MIR -36 172 91 542 258 93 0 chr15 41009126 41009308 -44686446 + MIR SINE MIR 59 257 -5 2177 106 3 0 chr15 41009315 41009599 -44686155 - AluSg SINE Alu -17 293 9 332 300 139 17 chr15 41009665 41009845 -44685909 + MIR SINE MIR 20 221 -41 2176 122 0 3 chr15 41009865 41010168 -44685586 - AluSx SINE Alu -10 302 1 734 254 10 10 chr15 41010199 41010400 -44685354 - MIR SINE MIR -1 261 61 2128 133 39 30 chr15 41011125 41011486 -44684268 - THE1B LTR MaLR 0 364 1 250 219 117 63 chr15 41012188 41012393 -44683361 - L1ME4a LINE L1 -2320 5488 5273 2823 168 94 27 chr15 41012488 41013114 -44682640 + L1MA7 LINE L1 5620 6287 -4 891 227 0 0 chr15 41013469 41013641 -44682113 - AluJ SINE Alu 0 312 141 894 154 0 0 chr15 41013697 41013827 -44681927 - AluJ SINE Alu -181 131 2 2361 108 0 0 chr15 41014574 41014880 -44680874 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr15 41015107 41015129 -44680625 + AT_rich Low_complexity Low_complexity 1 22 0 307 234 26 0 chr15 41015650 41015723 -44680031 - MER5A DNA MER1_type -81 106 20 2320 184 22 31 chr15 41015737 41016469 -44679285 - MER21B LTR ERV1 -73 790 6 242 232 49 12 chr15 41016510 41016592 -44679162 + MIR SINE MIR 37 121 -87 191 250 0 0 chr15 41016602 41016646 -44679108 + L2 LINE L2 3199 3242 -71 205 250 83 56 chr15 41016852 41016960 -44678794 + MER5B DNA MER1_type 37 147 -31 608 152 0 0 chr15 41016972 41017064 -44678690 + FLAM_A SINE Alu 23 114 -28 216 0 0 0 chr15 41017070 41017094 -44678660 + (CA)n Simple_repeat Simple_repeat 2 25 0 197 273 0 0 chr15 41017100 41017144 -44678610 - MER5B DNA MER1_type -134 44 1 2137 122 3 0 chr15 41017159 41017455 -44678299 - AluSg SINE Alu -13 297 1 250 200 368 0 chr15 41017773 41017898 -44677856 + MER5B DNA MER1_type 2 172 -6 1349 146 49 0 chr15 41018388 41018614 -44677140 - L1MA5 LINE L1 -6 6294 6058 2348 69 14 0 chr15 41018627 41018917 -44676837 - AluY SINE Alu -17 294 1 230 196 22 0 chr15 41019157 41019203 -44676551 - MIR SINE MIR -66 142 96 1999 132 4 7 chr15 41019542 41019823 -44675931 + AluSx SINE Alu 1 280 -32 21 23 0 47 chr15 41021637 41021659 -44674095 + AT_rich Low_complexity Low_complexity 1 22 -19 2338 91 3 3 chr15 41021659 41021957 -44673797 + AluSx SINE Alu 1 298 -14 21 23 0 47 chr15 41021957 41021977 -44673777 + AT_rich Low_complexity Low_complexity 22 41 0 305 239 15 62 chr15 41022722 41022852 -44672902 + L1MC5 LINE L1 7813 7936 -25 2306 85 3 0 chr15 41023797 41024091 -44671663 - AluY SINE Alu -16 295 1 343 214 0 0 chr15 41024091 41024147 -44671607 - Tigger7 DNA MER2_type -2405 82 27 749 311 27 54 chr15 41024168 41024609 -44671145 - MLT1K LTR MaLR -12 576 148 409 349 15 0 chr15 41024906 41025038 -44670716 - L2 LINE L2 -1 3271 3138 2402 88 3 0 chr15 41025077 41025371 -44670383 + AluSc SINE Alu 1 295 -14 2364 76 0 30 chr15 41026537 41026839 -44668915 - AluY SINE Alu -18 293 1 279 0 0 0 chr15 41027116 41027147 -44668607 + (TG)n Simple_repeat Simple_repeat 2 32 0 186 161 0 0 chr15 41027397 41027428 -44668326 + L2 LINE L2 3279 3309 -4 285 164 82 0 chr15 41029995 41030056 -44665698 - MLT1K LTR MaLR -30 558 493 641 185 22 30 chr15 41030900 41031035 -44664719 - FLAM_C SINE Alu -8 135 2 390 21 0 0 chr15 41031077 41031124 -44664630 + (TCCA)n Simple_repeat Simple_repeat 1 47 0 249 310 62 35 chr15 41031125 41031238 -44664516 - L2 LINE L2 -25 3247 3132 244 289 48 38 chr15 41031505 41031626 -44664128 - MER5B DNA MER1_type -51 127 17 3543 128 25 4 chr15 41032405 41032920 -44662834 - MER1A DNA MER1_type -1 526 1 2032 126 18 0 chr15 41032991 41033115 -44662639 + AluSg SINE Alu 1 121 -189 315 0 0 0 chr15 41033115 41033150 -44662604 + (CA)n Simple_repeat Simple_repeat 2 36 0 2032 126 18 0 chr15 41033150 41033311 -44662443 + AluSg SINE Alu 121 291 -19 759 242 111 5 chr15 41033618 41033808 -44661946 - MER20 DNA MER1_type -9 210 1 3358 199 24 2 chr15 41033902 41034540 -44661214 - MER82 DNA MER2_type 0 653 2 234 261 152 11 chr15 41034671 41034763 -44660991 - L1ME LINE L1 -490 5631 5527 2181 97 38 0 chr15 41034815 41035105 -44660649 + AluSx SINE Alu 1 301 -11 22 35 0 0 chr15 41035262 41035291 -44660463 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr15 41035405 41035433 -44660321 + AT_rich Low_complexity Low_complexity 1 28 0 282 307 115 24 chr15 41037205 41037492 -44658262 - L1ME LINE L1 -1098 5048 4736 358 300 118 35 chr15 41037533 41037820 -44657934 - L1ME LINE L1 -1436 4710 4400 1651 168 57 20 chr15 41037902 41038200 -44657554 - AluJb SINE Alu -3 309 1 296 303 86 12 chr15 41038257 41038419 -44657335 - L1P LINE L1 -1911 4235 4062 1963 66 4 46 chr15 41039183 41039442 -44656312 - AluSq SINE Alu -65 248 1 3576 103 14 59 chr15 41040054 41040646 -44655108 - MER34B LTR ERV1 0 565 1 946 113 0 0 chr15 41041841 41041974 -44653780 - AluSg/x SINE Alu -11 301 169 1402 90 6 0 chr15 41042050 41042227 -44653527 - AluSq SINE Alu -135 178 1 252 0 0 0 chr15 41044130 41044158 -44651596 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 6164 84 27 3 chr15 41044160 41044506 -44651248 - L1PB1 LINE L1 -13 6138 5802 585 0 0 0 chr15 41044506 41044571 -44651183 + (CA)n Simple_repeat Simple_repeat 1 65 0 6164 84 27 3 chr15 41044571 41045280 -44650474 - L1PB1 LINE L1 -349 5802 5063 2280 103 7 3 chr15 41046224 41046526 -44649228 + AluSx SINE Alu 1 303 -9 203 259 170 45 chr15 41047322 41047434 -44648320 - L2 LINE L2 -10 3262 3137 279 0 0 0 chr15 41047510 41047541 -44648213 + (TG)n Simple_repeat Simple_repeat 2 32 0 361 191 96 0 chr15 41047541 41047635 -44648119 + MIR SINE MIR 104 206 -56 354 281 47 23 chr15 41047872 41048000 -44647754 - L2 LINE L2 -1 3312 3182 749 182 0 0 chr15 41048220 41048341 -44647413 - AluJo SINE Alu -9 303 183 518 234 37 0 chr15 41048344 41048451 -44647303 - AluJo SINE Alu -200 112 2 30 0 0 0 chr15 41048455 41048485 -44647269 + AT_rich Low_complexity Low_complexity 1 30 0 468 298 116 35 chr15 41048496 41049003 -44646751 - L1ME4a LINE L1 -20 6101 5554 1911 137 0 14 chr15 41049152 41049437 -44646317 + AluSx SINE Alu 1 281 -31 1061 235 155 31 chr15 41050477 41050923 -44644831 - MLT1D LTR MaLR 0 505 5 282 268 14 0 chr15 41052099 41052170 -44643584 + CT-rich Low_complexity Low_complexity 2 73 0 966 209 33 0 chr15 41052217 41052428 -44643326 - MER20 DNA MER1_type -1 218 1 369 0 0 0 chr15 41052503 41052544 -44643210 + (TG)n Simple_repeat Simple_repeat 2 42 0 583 231 111 32 chr15 41053215 41053431 -44642323 - L1MC5 LINE L1 -52 7909 7677 1918 122 0 28 chr15 41053837 41054124 -44641630 - AluJo SINE Alu -12 300 22 183 156 0 0 chr15 41055357 41055389 -44640365 + T-rich Low_complexity Low_complexity 1 32 0 1793 175 6 16 chr15 41055894 41056209 -44639545 + AluJo SINE Alu 1 312 0 345 130 65 26 chr15 41056331 41056408 -44639346 - MER5C DNA MER1_type -196 128 49 258 32 0 0 chr15 41056495 41056526 -44639228 + (CA)n Simple_repeat Simple_repeat 2 32 0 520 111 0 0 chr15 41057098 41057179 -44638575 + AluS SINE Alu 229 309 -1 189 0 0 0 chr15 41057482 41057503 -44638251 + (T)n Simple_repeat Simple_repeat 1 21 0 2467 74 3 3 chr15 41058049 41058359 -44637395 + AluSp SINE Alu 2 311 -2 500 220 6 71 chr15 41058406 41058574 -44637180 + L1MC5 LINE L1 7749 7905 -56 3814 63 2 0 chr15 41058584 41059057 -44636697 - L1PA6 LINE L1 -4 6150 5677 2303 96 3 0 chr15 41059177 41059470 -44636284 + AluSx SINE Alu 7 300 -12 1047 191 43 9 chr15 41061067 41061277 -44634477 - L1MC1 LINE L1 -1 6332 6116 255 103 0 0 chr15 41061280 41061319 -44634435 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 1833 161 0 0 chr15 41061323 41061597 -44634157 - AluJb SINE Alu -38 274 1 1971 139 5 46 chr15 41061597 41061763 -44633991 - L1MC1 LINE L1 -206 6127 5956 2183 109 16 3 chr15 41061763 41062066 -44633688 - AluSq SINE Alu -6 307 1 1971 139 5 46 chr15 41062066 41062262 -44633492 - L1MC1 LINE L1 -377 5956 5780 2337 114 0 0 chr15 41062648 41062956 -44632798 + AluSq SINE Alu 1 308 -5 483 18 0 0 chr15 41063079 41063135 -44632619 + (CA)n Simple_repeat Simple_repeat 1 56 0 315 333 44 7 chr15 41063230 41063365 -44632389 - L2 LINE L2 -18 3254 3115 269 225 70 0 chr15 41064614 41064685 -44631069 - L2 LINE L2 -48 3265 3190 249 323 8 39 chr15 41066212 41066342 -44629412 - MIR SINE MIR -12 250 125 342 259 168 5 chr15 41066826 41067003 -44628751 - MIR SINE MIR -40 222 19 370 273 154 63 chr15 41068339 41068776 -44626978 - L1ME4a LINE L1 -195 5926 5413 2382 75 0 0 chr15 41068776 41069068 -44626686 - AluY SINE Alu -19 292 1 370 273 154 63 chr15 41069068 41069174 -44626580 - L1ME4a LINE L1 -708 5413 5318 2039 127 14 0 chr15 41069245 41069529 -44626225 + AluSq SINE Alu 5 292 -21 418 101 13 13 chr15 41069529 41069608 -44626146 + (TA)n Simple_repeat Simple_repeat 1 79 0 3571 151 42 49 chr15 41071514 41072334 -44623420 - MER4D LTR ERV1 0 903 1 342 0 0 0 chr15 41073122 41073160 -44622594 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr15 41076230 41076251 -44619503 + AT_rich Low_complexity Low_complexity 1 21 0 1637 103 0 0 chr15 41076314 41076528 -44619226 - AluSg/x SINE Alu -16 294 81 279 185 252 0 chr15 41078116 41078235 -44617519 - L1ME4a LINE L1 -3 6118 5970 180 0 0 0 chr15 41078851 41078871 -44616883 + (T)n Simple_repeat Simple_repeat 1 20 0 1489 167 51 27 chr15 41079275 41079569 -44616185 - AluJo SINE Alu -11 301 1 607 285 58 52 chr15 41079877 41080089 -44615665 - L1MC4a LINE L1 -1879 5929 5713 2234 98 3 3 chr15 41080089 41080385 -44615369 + AluSx SINE Alu 1 296 -16 607 285 58 52 chr15 41080385 41080502 -44615252 - L1MC4a LINE L1 -2095 5713 5598 207 139 0 0 chr15 41080502 41080538 -44615216 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 336 24 0 0 chr15 41083094 41083135 -44612619 + (CG)n Simple_repeat Simple_repeat 2 42 0 5098 133 94 15 chr15 41083630 41083921 -44611833 + L1MA8 LINE L1 5191 5458 -833 2299 72 38 0 chr15 41083921 41084212 -44611542 + AluSq SINE Alu 1 302 -11 5098 133 94 15 chr15 41084212 41084774 -44610980 + L1MA8 LINE L1 5458 6139 -152 2361 45 42 7 chr15 41084774 41085061 -44610693 + AluY SINE Alu 1 297 -14 5098 133 94 15 chr15 41085061 41085215 -44610539 + L1MA8 LINE L1 6139 6280 -11 2055 134 7 10 chr15 41085238 41085536 -44610218 + AluSx SINE Alu 1 297 -15 263 252 57 49 chr15 41085552 41085675 -44610079 - HAL1 LINE L1 -6 2501 2378 2404 127 8 14 chr15 41086464 41086827 -44608927 - MER46B DNA MER2_type 0 236 1 192 375 97 0 chr15 41086891 41087035 -44608719 - MIR SINE MIR -8 254 97 1302 101 0 5 chr15 41087909 41088098 -44607656 - L1 LINE L1 -1315 4831 4644 22 35 0 0 chr15 41088122 41088151 -44607603 + AT_rich Low_complexity Low_complexity 1 29 0 2334 235 54 30 chr15 41141194 41141900 -44553854 - L1MDb LINE L1 -4153 2387 1665 252 0 0 0 chr15 41141900 41141928 -44553826 + (T)n Simple_repeat Simple_repeat 1 28 0 423 98 0 65 chr15 41141930 41142022 -44553732 - SVA Other Other -627 759 674 5685 70 23 54 chr15 41142036 41143087 -44552667 - SVA Other Other -520 866 23 415 271 16 29 chr15 41143289 41143507 -44552247 + L1MEc LINE L1 783 969 -5101 2955 218 62 36 chr15 41143526 41144146 -44551608 - L1MDb LINE L1 -4861 1679 1051 1559 145 78 46 chr15 41144146 41144428 -44551326 - AluJo SINE Alu -21 291 1 2955 218 62 36 chr15 41144428 41144718 -44551036 - L1MDb LINE L1 -5489 1051 770 687 281 79 47 chr15 41144874 41145215 -44550539 - L1MDb LINE L1 -6155 385 34 2245 110 0 7 chr15 41145503 41145804 -44549950 + AluSx SINE Alu 1 299 -13 2158 103 3 28 chr15 41146412 41146732 -44549022 - AluSx SINE Alu 0 312 1 2199 120 0 0 chr15 41147007 41147299 -44548455 - AluSx SINE Alu -20 292 1 2274 103 0 13 chr15 41147399 41147711 -44548043 - AluSq SINE Alu -5 308 1 198 167 0 0 chr15 41147934 41147970 -44547784 + (CA)n Simple_repeat Simple_repeat 2 37 0 212 296 27 27 chr15 41147971 41148083 -44547671 + MER5A DNA MER1_type 77 177 -1 1118 188 11 71 chr15 41149613 41149670 -44546084 + L1MD3 LINE L1 7730 7789 -206 2529 62 7 3 chr15 41149670 41149975 -44545779 + AluY SINE Alu 1 306 -5 1118 188 11 71 chr15 41149975 41150199 -44545555 + L1MD3 LINE L1 7789 7994 -1 577 278 94 31 chr15 41150308 41150628 -44545126 + L1ME LINE L1 5480 5819 -302 2404 106 0 0 chr15 41150661 41150973 -44544781 + AluSx SINE Alu 1 312 0 1406 226 85 32 chr15 41151123 41151557 -44544197 + MER74B LTR ERVL 89 545 -77 439 287 44 13 chr15 41152829 41153011 -44542743 + MIR SINE MIR 16 202 -60 2109 138 0 0 chr15 41154891 41155194 -44540560 + AluSx SINE Alu 1 303 0 3061 188 25 7 chr15 41155444 41156034 -44539720 + L1MB8 LINE L1 5472 6072 -106 1022 190 139 0 chr15 41156046 41156262 -44539492 - L1MD2 LINE L1 -59 6300 6055 * 1550 263 57 2 chr15 41156242 41156717 -44539037 - L1M4 LINE L1 -1215 4931 4431 3578 148 8 3 chr15 41156925 41157525 -44538229 - L1PB3 LINE L1 0 6154 5552 389 261 87 0 chr15 41157974 41158089 -44537665 + MIR SINE MIR 82 206 -56 1366 158 147 19 chr15 41158131 41158397 -44537357 - AluJb SINE Alu -2 300 1 1150 194 133 7 chr15 41158459 41158737 -44537017 - MER58B DNA MER1_type -26 315 3 446 244 209 25 chr15 41158804 41159005 -44536749 + MIR SINE MIR 13 250 -12 314 298 44 19 chr15 41161538 41161696 -44534058 - L1ME4a LINE L1 -227 5894 5733 269 171 0 0 chr15 41161697 41161738 -44534016 + 5S rRNA rRNA 2 42 -79 454 298 107 8 chr15 41161741 41161983 -44533771 - L1ME4a LINE L1 -377 5744 5479 501 236 104 0 chr15 41163622 41163766 -44531988 + MIR SINE MIR 56 214 -48 955 183 78 58 chr15 41164227 41164484 -44531270 + HAL1 LINE L1 2246 2507 0 1650 229 46 33 chr15 41164624 41165170 -44530584 - L1M4 LINE L1 -3276 2870 2318 208 308 26 26 chr15 41165403 41165481 -44530273 - MIR3 SINE MIR -26 182 105 2578 80 0 0 chr15 41165526 41165837 -44529917 - AluY SINE Alu 0 311 1 306 0 0 0 chr15 41171984 41172018 -44523736 + (TG)n Simple_repeat Simple_repeat 2 35 0 324 264 72 16 chr15 41172094 41172219 -44523535 - L1ME LINE L1 -313 5808 5677 330 270 94 64 chr15 41172513 41172780 -44522974 - L1ME LINE L1 -481 5640 5366 29 47 0 0 chr15 41172827 41172870 -44522884 + AT_rich Low_complexity Low_complexity 1 43 0 615 259 81 20 chr15 41172907 41173154 -44522600 + L1ME LINE L1 5558 5819 -302 389 343 12 13 chr15 41174610 41174795 -44520959 + MER5A DNA MER1_type 3 176 -2 2325 95 0 16 chr15 41175874 41176179 -44519575 + AluSq SINE Alu 1 300 -13 196 237 186 0 chr15 41176403 41176462 -44519292 + L2 LINE L2 3241 3310 -3 1758 186 0 3 chr15 41176563 41176858 -44518896 - AluJo SINE Alu -18 294 1 535 286 167 5 chr15 41178528 41178738 -44517016 + MIR SINE MIR 16 259 -3 716 277 16 0 chr15 41178758 41178942 -44516812 - MER5A DNA MER1_type -2 187 1 444 244 167 6 chr15 41179036 41179192 -44516562 + MER5A DNA MER1_type 9 189 0 577 260 29 12 chr15 41179201 41179374 -44516380 + MER5B DNA MER1_type 3 178 0 233 358 86 13 chr15 41179860 41180011 -44515743 - MIR3 SINE MIR -3 205 44 26 0 0 0 chr15 41180715 41180741 -44515013 + AT_rich Low_complexity Low_complexity 1 26 0 2423 85 3 0 chr15 41182554 41182849 -44512905 - AluSg SINE Alu -14 296 1 230 338 13 0 chr15 41182910 41182987 -44512767 - L1MC5 LINE L1 -78 7883 7806 378 61 0 0 chr15 41183052 41183101 -44512653 + (CA)n Simple_repeat Simple_repeat 2 50 0 27 49 0 0 chr15 41183572 41183613 -44512141 + AT_rich Low_complexity Low_complexity 1 41 0 843 171 119 5 chr15 41183615 41183825 -44511929 - MER69 DNA AcHobo -106 2420 2187 415 331 19 7 chr15 41183834 41183988 -44511766 - MER69 DNA AcHobo -1584 942 787 * 874 271 39 36 chr15 41183983 41184263 -44511491 - MER69 DNA AcHobo -707 519 239 21 36 0 0 chr15 41185106 41185134 -44510620 + AT_rich Low_complexity Low_complexity 1 28 0 218 250 126 34 chr15 41185476 41185599 -44510155 + MIR3 SINE MIR 61 196 -12 273 247 227 0 chr15 41185658 41185755 -44509999 - L2 LINE L2 0 3272 3154 294 322 93 0 chr15 41186004 41186122 -44509632 - L2 LINE L2 -10 3262 3134 186 156 0 0 chr15 41186160 41186205 -44509549 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 2344 108 0 10 chr15 41187714 41188028 -44507726 - AluSx SINE Alu -1 311 1 238 344 104 0 chr15 41188061 41188157 -44507597 + L2 LINE L2 3190 3295 -18 2174 107 10 23 chr15 41188261 41188570 -44507184 + AluSp SINE Alu 1 305 -8 536 223 38 25 chr15 41188579 41188736 -44507018 - MIR SINE MIR -37 225 67 2328 102 0 13 chr15 41189613 41189928 -44505826 - AluSx SINE Alu -1 311 1 306 0 0 0 chr15 41190332 41190366 -44505388 + (T)n Simple_repeat Simple_repeat 1 34 0 493 292 137 2 chr15 41190956 41191364 -44504390 + L2 LINE L2 1737 2199 -1115 183 80 0 0 chr15 41193057 41193082 -44502672 + (TCTCG)n Simple_repeat Simple_repeat 2 26 0 2331 108 3 0 chr15 41193082 41193388 -44502366 - AluSx SINE Alu -5 307 1 299 289 21 10 chr15 41193598 41193705 -44502049 - MIR SINE MIR -65 143 47 1655 179 55 0 chr15 41195065 41195356 -44500398 + AluJo SINE Alu 1 307 -5 2269 112 0 7 chr15 41195472 41195775 -44499979 - AluSq SINE Alu -11 302 2 1823 135 21 11 chr15 41195783 41196064 -44499690 - AluJb SINE Alu -24 288 5 26 30 0 0 chr15 41197972 41198005 -44497749 + AT_rich Low_complexity Low_complexity 1 33 0 233 173 77 0 chr15 41198446 41198498 -44497256 + Zaphod DNA AcHobo 1175 1230 -2801 320 281 55 0 chr15 41199451 41199579 -44496175 - L3 LINE CR1 -272 1305 1171 1067 184 118 76 chr15 41200387 41200403 -44495351 - L1MC5 LINE L1 -259 7702 7688 2113 130 6 16 chr15 41200403 41200718 -44495036 + AluSx SINE Alu 1 312 0 1067 184 118 76 chr15 41200718 41200897 -44494857 - L1MC5 LINE L1 -273 7688 7518 905 193 42 0 chr15 41200897 41201109 -44494645 - L1MA7 LINE L1 -5 6286 6066 1067 184 118 76 chr15 41201109 41201428 -44494326 - L1MC5 LINE L1 -443 7518 7165 2386 102 0 3 chr15 41201438 41201742 -44494012 + AluSx SINE Alu 8 310 -2 311 330 35 0 chr15 41203459 41203574 -44492180 + MIR3 SINE MIR 66 184 -24 490 178 103 182 chr15 41203687 41203929 -44491825 + MER58A DNA MER1_type 2 224 0 224 308 71 24 chr15 41207298 41207467 -44488287 - MIR3 SINE MIR -15 193 17 239 137 98 0 chr15 41208349 41208400 -44487354 + Zaphod DNA AcHobo 1175 1230 -2801 434 260 67 81 chr15 41208552 41209044 -44486710 + L1ME LINE L1 2131 2615 -3531 338 217 108 25 chr15 41209044 41209164 -44486590 + L1ME LINE L1 3144 3273 -2873 620 242 29 57 chr15 41209537 41209781 -44485973 - L2 LINE L2 0 3313 3077 2388 62 27 0 chr15 41209781 41210073 -44485681 - AluY SINE Alu -11 300 1 517 299 86 44 chr15 41210169 41211023 -44484731 + L1ME LINE L1 3881 4786 -1360 305 257 74 54 chr15 41211038 41211186 -44484568 + L1ME LINE L1 5127 5277 -869 239 292 50 8 chr15 41211243 41211363 -44484391 + L1ME LINE L1 5351 5475 -691 2310 93 10 3 chr15 41211535 41211837 -44483917 + AluSp SINE Alu 1 304 -9 1336 186 89 0 chr15 41212029 41212308 -44483446 - AluJo SINE Alu 0 302 1 1111 196 71 58 chr15 41213186 41213497 -44482257 + MLT1A1 LTR MaLR 1 315 -50 22 70 0 0 chr15 41213500 41213543 -44482211 + AT_rich Low_complexity Low_complexity 1 43 0 301 109 22 0 chr15 41213551 41213597 -44482157 + MLT1A1 LTR MaLR 346 392 -4 708 148 66 66 chr15 41213803 41213920 -44481834 - MER5A DNA MER1_type 0 189 70 2596 50 0 3 chr15 41213920 41214223 -44481531 - AluY SINE Alu -8 303 2 708 148 66 66 chr15 41214223 41214288 -44481466 - MER5A DNA MER1_type -118 71 7 239 303 56 11 chr15 41214557 41214646 -44481108 - MIR SINE MIR -57 151 59 336 231 0 13 chr15 41214720 41214798 -44480956 + MARNA DNA Mariner 149 225 -361 1673 171 65 98 chr15 41214798 41215306 -44480448 + L1MA9 LINE L1 5784 6274 -38 204 263 26 53 chr15 41217372 41217448 -44478306 + MIR SINE MIR 66 139 -69 2980 185 58 4 chr15 41217585 41218721 -44477033 - L1MB7 LINE L1 -254 5930 4738 621 231 53 82 chr15 41218713 41218995 -44476759 - L1MC5 LINE L1 -427 7534 7261 * 517 204 182 51 chr15 41219121 41219434 -44476320 - L1MC5 LINE L1 -722 7239 6886 579 162 110 19 chr15 41219444 41219598 -44476156 + L1MC5 LINE L1 7745 7912 -49 * 641 274 129 74 chr15 41219596 41220098 -44475656 - L1MC4a LINE L1 -900 6908 6435 264 30 0 0 chr15 41220098 41220131 -44475623 + (TG)n Simple_repeat Simple_repeat 2 34 0 641 274 129 74 chr15 41220131 41220626 -44475128 - L1MC4a LINE L1 -1373 6435 5856 1726 148 48 28 chr15 41221537 41221827 -44473927 - AluSx SINE Alu -16 296 1 313 359 15 30 chr15 41223591 41223643 -44472111 - MIR SINE MIR -66 196 145 2059 119 3 3 chr15 41223643 41223936 -44471818 - AluSx SINE Alu -15 297 5 313 359 15 30 chr15 41223936 41224081 -44471673 - MIR SINE MIR -117 145 2 213 190 0 51 chr15 41224695 41224774 -44470980 + CT-rich Low_complexity Low_complexity 2 76 0 2127 104 35 0 chr15 41224832 41225120 -44470634 - AluSp SINE Alu -15 298 1 22 56 0 0 chr15 41225143 41225179 -44470575 + AT_rich Low_complexity Low_complexity 1 36 0 630 149 0 0 chr15 41233913 41234047 -44461707 + (G)n Simple_repeat Simple_repeat 1 134 0 2039 119 0 10 chr15 41234916 41235211 -44460543 + AluSc SINE Alu 1 292 -17 29 28 0 0 chr15 41235927 41235963 -44459791 + AT_rich Low_complexity Low_complexity 1 36 0 322 299 57 77 chr15 41235989 41236111 -44459643 + MIR3 SINE MIR 1 119 -143 1704 163 27 24 chr15 41236111 41236423 -44459331 - AluJo SINE Alu -16 296 1 322 299 57 77 chr15 41236423 41236516 -44459238 + MIR3 SINE MIR 119 212 -50 207 0 0 0 chr15 41237239 41237262 -44458492 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2094 59 0 0 chr15 41237378 41237632 -44458122 - L1PA8 LINE L1 -7 6165 5912 408 88 0 0 chr15 41237893 41237950 -44457804 + (CA)n Simple_repeat Simple_repeat 2 58 0 344 225 271 23 chr15 41238253 41238382 -44457372 + MIR SINE MIR 9 169 -93 1627 226 75 25 chr15 41238680 41239118 -44456636 + MLT1C LTR MaLR 6 465 -2 261 329 95 0 chr15 41239120 41239257 -44456497 - MIR3 SINE MIR -55 153 4 456 264 28 33 chr15 41239686 41239868 -44455886 + L1MB8 LINE L1 5998 6178 0 405 296 76 23 chr15 41239868 41240040 -44455714 + L1ME LINE L1 1880 2060 -4480 1550 296 88 25 chr15 41240053 41241019 -44454735 + L1ME LINE L1 4355 5381 -1159 360 0 0 0 chr15 41241081 41241121 -44454633 + (CA)n Simple_repeat Simple_repeat 2 41 0 475 178 141 87 chr15 41241121 41241153 -44454601 + L1MD2 LINE L1 6155 6184 -175 1905 76 7 22 chr15 41241153 41241428 -44454326 + AluY SINE Alu 39 309 -2 475 178 141 87 chr15 41241428 41241580 -44454174 + L1MD2 LINE L1 6184 6349 -10 * 558 263 131 41 chr15 41241579 41242147 -44453607 + L1ME LINE L1 5404 6002 -562 390 132 53 0 chr15 41242249 41242325 -44453429 - L1MB7 LINE L1 -236 5948 5869 2013 154 89 44 chr15 41242331 41242757 -44452997 - L1MB7 LINE L1 -380 5804 5325 1570 169 13 33 chr15 41242757 41243059 -44452695 - AluJo SINE Alu -12 300 5 2013 154 89 44 chr15 41243059 41243182 -44452572 - L1MB7 LINE L1 -859 5325 5209 650 239 132 12 chr15 41243278 41243521 -44452233 - MLT1J LTR MaLR -171 340 69 228 275 14 29 chr15 41243543 41243612 -44452142 - MIR SINE MIR -174 88 21 2080 109 27 0 chr15 41243707 41244000 -44451754 - AluSx SINE Alu -11 301 1 2029 121 13 3 chr15 41245030 41245335 -44450419 - AluSg SINE Alu -2 308 1 586 270 45 40 chr15 41245336 41245558 -44450196 - MARNA DNA Mariner -192 394 172 216 323 0 0 chr15 41245636 41245698 -44450056 + L2 LINE L2 3231 3292 -21 198 71 0 0 chr15 41246058 41246086 -44449668 + (TG)n Simple_repeat Simple_repeat 2 29 0 2264 90 0 0 chr15 41246133 41246434 -44449320 + AluSc SINE Alu 1 301 -8 218 203 95 54 chr15 41249012 41249086 -44446668 + L2 LINE L2 3223 3299 -14 202 283 0 0 chr15 41249258 41249304 -44446450 - L2 LINE L2 -6 3307 3262 738 158 17 0 chr15 41249619 41249739 -44446015 - MLT1I LTR MaLR 0 409 288 537 225 118 32 chr15 41249790 41249977 -44445777 - MLT1I LTR MaLR -206 203 1 294 36 18 71 chr15 41250732 41250788 -44444966 + L1PA4 LINE L1 6103 6155 0 254 367 55 18 chr15 41251533 41251808 -44443946 + L2 LINE L2 2469 2753 -561 1452 169 54 37 chr15 41252014 41252309 -44443445 - AluJo SINE Alu -12 300 1 251 292 42 14 chr15 41253325 41253397 -44442357 + L2 LINE L2 3199 3272 0 763 253 45 10 chr15 41254443 41254645 -44441109 - MIR SINE MIR -41 221 13 1384 187 181 19 chr15 41255392 41255767 -44439987 + MER63B DNA MER1_type 1 436 0 335 321 124 22 chr15 41256981 41257118 -44438636 + L2 LINE L2 3122 3272 0 3531 134 4 9 chr15 41257402 41257932 -44437822 + MER1A DNA MER1_type 1 527 0 187 293 0 0 chr15 41258798 41258839 -44436915 + MIR SINE MIR 30 70 -138 555 345 187 13 chr15 41259013 41259872 -44435882 - L2 LINE L2 -2209 1105 97 202 229 0 42 chr15 41260086 41260134 -44435620 + L3b LINE CR1 1514 1559 -24 * 219 250 18 0 chr15 41260105 41260161 -44435593 + MIR3 SINE MIR 152 208 0 500 252 143 0 chr15 41260447 41260594 -44435160 - MIR SINE MIR 0 262 95 295 365 16 8 chr15 41260641 41260767 -44434987 - MIR3 SINE MIR -73 135 9 854 185 32 13 chr15 41260806 41260963 -44434791 + MLT1F LTR MaLR 381 540 -2 1060 198 58 10 chr15 41261180 41261387 -44434367 - MER58A DNA MER1_type -7 217 1 1090 240 131 3 chr15 41261785 41262068 -44433686 - MLT1F LTR MaLR -218 324 6 1553 138 4 4 chr15 41262168 41262415 -44433339 - AluJb SINE Alu -1 311 65 241 230 95 14 chr15 41262608 41262682 -44433072 + LTR67 LTR ERVL 3 82 -475 330 205 43 60 chr15 41262700 41262785 -44432969 + LTR67 LTR ERVL 433 517 -40 2028 103 0 51 chr15 41262785 41263096 -44432658 + AluSx SINE Alu 17 311 -1 330 205 43 60 chr15 41263096 41263127 -44432627 + LTR67 LTR ERVL 517 547 -10 622 287 115 10 chr15 41263226 41263435 -44432319 + MIR SINE MIR 22 252 -10 199 339 74 25 chr15 41264364 41264485 -44431269 + L2 LINE L2 3180 3306 -7 695 258 18 10 chr15 41265281 41265469 -44430285 - MIR SINE MIR -62 146 3 21 0 0 0 chr15 41265580 41265601 -44430153 + AT_rich Low_complexity Low_complexity 1 21 0 3348 234 25 20 chr15 41265820 41266666 -44429088 + Zaphod DNA AcHobo 14 863 -3168 1586 193 37 11 chr15 41266708 41267060 -44428694 + MLT1A1 LTR MaLR 5 365 0 351 255 11 11 chr15 41267727 41267821 -44427933 + Zaphod DNA AcHobo 14 107 -3924 472 247 13 100 chr15 41268001 41268153 -44427601 - MIR3 SINE MIR -42 166 30 806 201 6 12 chr15 41268567 41268736 -44427018 - FRAM SINE Alu -8 168 1 595 222 129 16 chr15 41268993 41269187 -44426567 - MER69 DNA AcHobo -727 1799 1584 1154 185 0 5 chr15 41269238 41269460 -44426294 + AluJo SINE Alu 87 307 -5 248 292 32 0 chr15 41269712 41269794 -44425960 - MER69 DNA AcHobo -87 2439 5 418 222 12 0 chr15 41270142 41270223 -44425531 - L2 LINE L2 -2 3311 3230 1825 216 75 37 chr15 41270292 41270810 -44424944 + MLT1F LTR MaLR 5 542 0 347 260 26 0 chr15 41273209 41273286 -44422468 - MIR SINE MIR -70 192 114 345 100 0 0 chr15 41273408 41273458 -44422296 + (CA)n Simple_repeat Simple_repeat 2 51 0 232 326 90 45 chr15 41273785 41274030 -44421724 + L2 LINE L2 2829 3084 -188 309 274 26 26 chr15 41274282 41274395 -44421359 + MIR SINE MIR 96 208 -54 737 235 131 5 chr15 41275519 41275740 -44420014 + L1ME3A LINE L1 5920 6168 -2 625 294 123 0 chr15 41276108 41276312 -44419442 - MIR SINE MIR -16 246 18 314 263 40 0 chr15 41276554 41276630 -44419124 - MIR SINE MIR -67 195 117 24 32 0 0 chr15 41277669 41277700 -44418054 + AT_rich Low_complexity Low_complexity 1 31 0 1097 154 0 6 chr15 41277894 41278069 -44417685 + AluJb SINE Alu 116 289 -23 207 0 0 0 chr15 41278088 41278111 -44417643 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 318 279 197 8 chr15 41278154 41278398 -44417356 + L1ME4a LINE L1 5712 6001 -120 422 197 217 28 chr15 41279070 41279235 -44416519 - MIR SINE MIR -54 154 2 360 0 0 0 chr15 41279686 41279726 -44416028 + (CA)n Simple_repeat Simple_repeat 2 41 0 216 158 0 0 chr15 41279791 41279829 -44415925 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1891 114 0 4 chr15 41280111 41280430 -44415324 + AluSx SINE Alu 15 332 0 737 107 0 0 chr15 41280741 41280844 -44414910 + AluSp/q SINE Alu 195 297 -16 335 285 117 30 chr15 41281000 41281694 -44414060 - L1MDa LINE L1 -3180 3202 2449 400 136 0 30 chr15 41281696 41281762 -44413992 + L2 LINE L2 3250 3313 0 403 269 98 52 chr15 41281769 41281997 -44413757 - L1MDa LINE L1 -3939 2443 2189 480 291 44 30 chr15 41282062 41282315 -44413439 - MIR3 SINE MIR 0 262 4 379 282 36 18 chr15 41283350 41283460 -44412294 + MER5A DNA MER1_type 55 166 -23 2125 242 21 35 chr15 41283545 41284108 -44411646 + LTR60 LTR ERV1 1 555 -31 308 330 11 0 chr15 41284266 41284360 -44411394 + MIR SINE MIR 51 145 -63 554 269 125 19 chr15 41284483 41284691 -44411063 - MIR SINE MIR -14 248 19 195 321 79 21 chr15 41284686 41284826 -44410928 - L2 LINE L2 -971 2343 2196 * 1748 178 0 0 chr15 41285941 41286233 -44409521 - AluJb SINE Alu -20 292 1 414 297 36 42 chr15 41286897 41287062 -44408692 + MER5A DNA MER1_type 21 184 -5 185 268 0 0 chr15 41287138 41287156 -44408598 - L2 LINE L2 -2 3311 3271 185 43 0 0 chr15 41287156 41287179 -44408575 - MIR SINE MIR -14 248 226 695 68 42 8 chr15 41287187 41287305 -44408449 + CT-rich Low_complexity Low_complexity 3 124 0 781 201 0 21 chr15 41287307 41287451 -44408303 - FLAM_A SINE Alu -1 141 1 893 217 42 0 chr15 41287456 41287645 -44408109 - MIR SINE MIR -46 216 20 192 276 41 71 chr15 41287795 41287893 -44407861 - MIR SINE MIR -67 195 101 383 217 92 26 chr15 41289057 41289209 -44406545 - MER5B DNA MER1_type -16 162 1 200 368 29 0 chr15 41289385 41289453 -44406301 + L2 LINE L2 3151 3220 -52 2058 80 4 7 chr15 41289508 41289783 -44405971 - AluSg SINE Alu -10 300 27 325 230 40 50 chr15 41289827 41289927 -44405827 + MIR SINE MIR 118 216 -46 180 279 98 0 chr15 41289955 41290016 -44405738 + L2 LINE L2 2964 3030 -242 383 168 61 92 chr15 41290957 41291088 -44404666 + MER103 DNA DNA 21 147 -19 231 227 0 0 chr15 41291105 41291171 -44404583 + T-rich Low_complexity Low_complexity 5 70 0 1613 155 45 24 chr15 41291324 41291615 -44404139 + AluJo SINE Alu 1 297 -15 248 299 48 5 chr15 41291635 41291822 -44403932 + L1M4 LINE L1 3805 3999 -2147 258 274 48 43 chr15 41291994 41292224 -44403530 + L1M4 LINE L1 4369 4599 -1547 215 235 35 24 chr15 41292466 41292551 -44403203 + (TATATG)n Simple_repeat Simple_repeat 5 90 0 * 217 341 16 8 chr15 41292502 41292628 -44403126 + (CATA)n Simple_repeat Simple_repeat 3 129 0 453 262 62 0 chr15 41292631 41292776 -44402978 + L1ME4a LINE L1 5965 6118 -3 2216 96 20 0 chr15 41292874 41293177 -44402577 + AluSp SINE Alu 2 310 -3 241 292 108 39 chr15 41293781 41293911 -44401843 + MIR SINE MIR 14 152 -110 518 187 89 8 chr15 41294291 41294414 -44401340 + FLAM_C SINE Alu 1 133 0 275 299 81 53 chr15 41295530 41295814 -44399940 + L1MEd LINE L1 914 1205 -4914 475 324 28 6 chr15 41295882 41296064 -44399690 - MIR SINE MIR -33 229 44 658 184 0 0 chr15 41296086 41296195 -44399559 - MER81 DNA DNA -5 109 1 401 267 293 0 chr15 41296195 41296386 -44399368 + MIR SINE MIR 16 262 0 281 284 14 135 chr15 41296512 41296580 -44399174 - MER5A DNA MER1_type 0 189 144 1903 123 0 4 chr15 41296580 41296887 -44398867 + AluSx SINE Alu 12 317 0 281 284 14 135 chr15 41296887 41296958 -44398796 - MER5A DNA MER1_type -45 144 66 1081 165 10 31 chr15 41298039 41298233 -44397521 - MER3 DNA MER1_type -8 201 12 263 254 32 87 chr15 41298248 41298374 -44397380 - MER117 DNA MER1_type -4 193 75 1948 195 21 66 chr15 41298447 41298915 -44396839 - Charlie4a DNA MER1_type -1456 505 60 3034 114 7 0 chr15 41298915 41299346 -44396408 - MER57B LTR ERV1 0 434 1 1948 195 21 66 chr15 41299346 41299389 -44396365 - Charlie4a DNA MER1_type -1901 60 17 314 331 25 12 chr15 41300445 41300608 -44395146 - MIR SINE MIR 0 262 98 2208 83 3 0 chr15 41300798 41301086 -44394668 + AluSc SINE Alu 17 305 -4 1334 347 123 14 chr15 41301678 41302598 -44393156 - L2 LINE L2 -655 2659 1640 249 226 16 0 chr15 41302598 41302660 -44393094 + L1ME4a LINE L1 5960 6022 -99 2066 226 44 12 chr15 41302876 41303394 -44392360 + MLT1F LTR MaLR 2 536 -6 361 240 100 0 chr15 41303968 41304068 -44391686 + L2 LINE L2 3200 3309 -4 1417 207 11 3 chr15 41305520 41305805 -44389949 - AluJo SINE Alu -24 288 2 327 255 88 0 chr15 41305822 41305924 -44389830 - MIR SINE MIR -61 147 37 296 330 46 52 chr15 41306024 41306111 -44389643 - MIR SINE MIR -71 191 104 603 51 71 20 chr15 41306111 41306209 -44389545 - L1MA3 LINE L1 0 6305 6203 296 330 46 52 chr15 41306209 41306294 -44389460 - MIR SINE MIR -158 104 20 284 169 58 17 chr15 41306981 41307153 -44388601 + (TA)n Simple_repeat Simple_repeat 1 179 0 317 307 20 10 chr15 41307160 41307261 -44388493 + L1MC4 LINE L1 6600 6701 -1341 609 232 22 38 chr15 41307261 41307446 -44388308 - MIR SINE MIR 0 262 81 729 164 23 23 chr15 41307685 41307813 -44387941 + FLAM_C SINE Alu 6 133 -10 201 255 0 0 chr15 41307892 41307939 -44387815 + (TAG)n Simple_repeat Simple_repeat 3 49 0 2200 98 10 0 chr15 41308069 41308374 -44387380 - AluSx SINE Alu -4 308 1 421 236 82 60 chr15 41308374 41308536 -44387218 - MIR SINE MIR -63 145 34 184 265 157 12 chr15 41310244 41310327 -44385427 - L2 LINE L2 -40 3273 3179 264 235 0 0 chr15 41310670 41310721 -44385033 + L2 LINE L2 3263 3313 0 270 234 41 47 chr15 41310784 41310886 -44384868 + MIR SINE MIR 3 106 -102 213 39 0 0 chr15 41310888 41310914 -44384840 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 421 293 127 0 chr15 41311647 41311804 -44383950 - MIR SINE MIR 0 262 86 336 301 67 42 chr15 41312047 41312240 -44383514 + L1MC4a LINE L1 3206 3403 -2743 997 62 55 0 chr15 41312323 41312451 -44383303 + AluSg SINE Alu 47 181 -129 692 303 40 14 chr15 41312466 41312762 -44382992 + L1MC4a LINE L1 3865 4174 -1972 1767 157 74 3 chr15 41312762 41313099 -44382655 + MER46B DNA MER2_type 1 236 0 692 303 40 14 chr15 41313099 41313172 -44382582 + L1MC4a LINE L1 4174 4244 -1902 385 323 0 0 chr15 41313325 41313449 -44382305 + L1MC4a LINE L1 5786 5909 -1899 554 197 7 0 chr15 41313552 41313694 -44382060 + (CAGAC)n Simple_repeat Simple_repeat 4 146 0 311 257 104 35 chr15 41313768 41313912 -44381842 + HAL1b LINE L1 1187 1340 -8 1194 93 6 0 chr15 41315096 41315258 -44380496 + AluSq SINE Alu 135 297 -16 482 310 75 25 chr15 41316176 41316376 -44379378 + MIR SINE MIR 23 232 -30 397 217 124 134 chr15 41317253 41317470 -44378284 - MER58C DNA MER1_type 0 215 1 755 250 22 0 chr15 41317539 41317719 -44378035 - MIR SINE MIR -32 230 47 2183 82 0 11 chr15 41317860 41318165 -44377589 + AluSc SINE Alu 1 302 0 22 0 0 0 chr15 41318578 41318600 -44377154 + AT_rich Low_complexity Low_complexity 1 22 0 400 238 0 12 chr15 41318815 41318895 -44376859 + AluJ/FLAM SINE Alu 1 79 -223 1591 233 96 39 chr15 41318930 41319450 -44376304 + Charlie1a DNA MER1_type 18 567 -888 842 242 71 51 chr15 41319452 41319852 -44375902 + L1MEc LINE L1 35 459 -5937 262 221 39 48 chr15 41320218 41320322 -44375432 + MER69 DNA AcHobo 2424 2526 0 212 233 71 117 chr15 41320401 41320753 -44375001 - L2 LINE L2 0 3272 2937 180 0 0 0 chr15 41322071 41322091 -44373663 + (GGGAA)n Simple_repeat Simple_repeat 5 24 0 186 133 0 0 chr15 41322403 41322433 -44373321 + (CCCCCT)n Simple_repeat Simple_repeat 6 35 0 181 140 0 40 chr15 41322467 41322506 -44373248 + (TTCC)n Simple_repeat Simple_repeat 1 39 -9 2138 109 3 3 chr15 41322506 41322808 -44372946 - AluSx SINE Alu -10 302 1 181 140 0 40 chr15 41322808 41322818 -44372936 + (TTCC)n Simple_repeat Simple_repeat 39 48 0 662 179 51 39 chr15 41322883 41323039 -44372715 + MER5B DNA MER1_type 17 174 -4 1712 143 45 3 chr15 41323920 41324207 -44371547 + AluJb SINE Alu 1 299 -13 1160 239 67 78 chr15 41324404 41324855 -44370899 + LTR16A1 LTR ERVL 6 451 -6 551 189 197 0 chr15 41324912 41325039 -44370715 + MER5A DNA MER1_type 31 182 -7 242 348 12 43 chr15 41325305 41325469 -44370285 + MIR3 SINE MIR 47 205 -3 272 137 20 0 chr15 41325639 41325690 -44370064 + GA-rich Low_complexity Low_complexity 3 54 0 997 163 59 35 chr15 41326167 41326370 -44369384 - MER3 DNA MER1_type 0 209 2 2139 106 10 0 chr15 41326955 41327256 -44368498 - AluSx SINE Alu -8 304 1 2159 114 58 19 chr15 41327917 41328278 -44367476 + THE1C LTR MaLR 1 375 0 329 231 93 9 chr15 41328299 41328407 -44367347 - L1ME3A LINE L1 -286 5884 5768 2652 13 0 0 chr15 41328438 41328739 -44367015 + AluYa5 SINE Alu 1 301 -10 801 129 0 0 chr15 41330234 41330350 -44365404 - AluSq/x SINE Alu -196 116 1 393 236 19 9 chr15 41330350 41330466 -44365288 - L1ME3A LINE L1 -380 5782 5664 413 366 51 0 chr15 41330683 41330858 -44364896 + MIR SINE MIR 51 234 -28 437 343 105 0 chr15 41331525 41331697 -44364057 + MIR SINE MIR 21 210 -52 442 256 216 88 chr15 41333246 41333615 -44362139 + L2 LINE L2 2324 2769 -545 1771 125 47 0 chr15 41333615 41333894 -44361860 - AluJb SINE Alu -20 292 1 442 256 216 88 chr15 41333894 41334001 -44361753 + L2 LINE L2 2769 2861 -453 454 230 48 113 chr15 41334062 41334292 -44361462 - L2 LINE L2 -7 3306 3092 234 204 0 0 chr15 41334508 41334557 -44361197 + MLT1J1 LTR MaLR 266 314 -132 2195 155 62 23 chr15 41334648 41335035 -44360719 - MSTA LTR MaLR -26 402 1 505 307 116 17 chr15 41335114 41335521 -44360233 - L2 LINE L2 -842 2472 2026 504 229 153 0 chr15 41335561 41335693 -44360061 - MER5A DNA MER1_type -30 159 4 276 236 146 0 chr15 41336459 41336548 -44359206 + L2 LINE L2 2967 3068 -204 581 283 90 11 chr15 41336704 41336881 -44358873 + MER91A DNA MER1_type 3 193 -3 190 310 70 20 chr15 41336881 41336917 -44358837 - MIR SINE MIR -152 56 16 2404 110 19 19 chr15 41337520 41337884 -44357870 + THE1B LTR MaLR 1 364 0 1856 145 30 0 chr15 41338384 41338687 -44357067 - AluSx SINE Alu 0 312 1 627 197 0 0 chr15 41338767 41338945 -44356809 + (AATAG)n Simple_repeat Simple_repeat 1 178 0 345 257 29 46 chr15 41338957 41339132 -44356622 - MER112 DNA MER1_type -88 172 1 212 281 85 49 chr15 41339146 41339228 -44356526 + L2 LINE L2 2682 2766 -548 * 1269 240 58 54 chr15 41339223 41339837 -44355917 - L2 LINE L2 0 3313 2698 396 305 50 65 chr15 41339977 41340298 -44355456 + L2 LINE L2 2952 3267 -5 223 239 0 0 chr15 41341906 41341952 -44353802 - L2 LINE L2 -16 3297 3252 222 122 54 27 chr15 41342468 41342542 -44353212 + (CAGAGA)n Simple_repeat Simple_repeat 6 81 0 349 252 106 86 chr15 41343125 41343188 -44352566 - MIR SINE MIR -84 178 118 1685 113 55 24 chr15 41343188 41343479 -44352275 + AluJb SINE Alu 1 300 -12 349 252 106 86 chr15 41343479 41343566 -44352188 - MIR SINE MIR -144 118 25 506 278 53 24 chr15 41345008 41345177 -44350577 + MIR3 SINE MIR 21 194 -14 2636 94 11 3 chr15 41345263 41345624 -44350130 + THE1B LTR MaLR 1 364 0 198 0 0 0 chr15 41345655 41345677 -44350077 + (CTGTG)n Simple_repeat Simple_repeat 3 24 0 444 287 176 33 chr15 41345853 41346679 -44349075 + L1ME LINE L1 4861 5818 -303 2161 115 3 0 chr15 41346688 41347000 -44348754 + AluSp SINE Alu 1 313 0 631 269 6 23 chr15 41347065 41347236 -44348518 + MIR SINE MIR 95 262 0 1179 169 151 11 chr15 41347384 41347668 -44348086 - L1MB7 LINE L1 -9 6175 5852 841 270 54 33 chr15 41347762 41348230 -44347524 - LTR33 LTR ERVL -1 520 13 321 280 0 13 chr15 41348569 41348644 -44347110 + L2 LINE L2 3238 3311 -2 7117 34 0 0 chr15 41349275 41350178 -44345576 - L1PA3 LINE L1 -65 6090 5188 214 224 82 0 chr15 41350319 41350368 -44345386 - L2 LINE L2 -15 3257 3205 2447 77 0 0 chr15 41350549 41350860 -44344894 + AluY SINE Alu 1 311 0 1107 116 70 41 chr15 41351106 41351274 -44344480 - L1MA5 LINE L1 -5 6295 6116 1756 130 11 0 chr15 41351274 41351536 -44344218 + AluJb SINE Alu 27 291 -21 1107 116 70 41 chr15 41351536 41351609 -44344145 - L1MA5 LINE L1 -184 6116 6047 236 317 85 5 chr15 41352061 41352165 -44343589 - MIR SINE MIR -65 143 38 1962 221 19 52 chr15 41352249 41352782 -44342972 - L1ME3A LINE L1 -70 6100 5586 347 256 56 44 chr15 41353154 41353244 -44342510 + L2 LINE L2 3168 3258 -14 343 301 122 8 chr15 41354365 41354488 -44341266 - MIR SINE MIR -6 256 120 603 328 20 0 chr15 41354510 41354711 -44341043 + MER115 DNA AcHobo 1 205 -488 226 125 0 0 chr15 41354710 41354742 -44341012 - MLT1J2 LTR MaLR -308 142 111 * 717 221 140 22 chr15 41355284 41355506 -44340248 + MIR SINE MIR 9 256 -6 4178 163 28 57 chr15 41355667 41355950 -44339804 - L1MB7 LINE L1 0 6184 5894 1991 114 24 0 chr15 41355950 41356240 -44339514 + AluSx SINE Alu 1 297 -15 4178 163 28 57 chr15 41356240 41356974 -44338780 - L1MB7 LINE L1 -290 5894 5208 3948 138 65 5 chr15 41357115 41357774 -44337980 + MER4D LTR ERV1 205 903 0 260 167 33 0 chr15 41359244 41359304 -44336450 - MER4-int LTR ERV1 -5425 1173 1112 310 259 187 64 chr15 41359508 41359680 -44336074 + MIR SINE MIR 9 192 -66 451 284 35 0 chr15 41359800 41359916 -44335838 - L2 LINE L2 0 3313 3194 302 353 72 12 chr15 41360082 41360249 -44335505 + MIR SINE MIR 22 198 -64 366 23 0 0 chr15 41360268 41360311 -44335443 + (CA)n Simple_repeat Simple_repeat 2 44 0 270 0 0 0 chr15 41360310 41360340 -44335414 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 278 260 130 0 chr15 41361233 41361333 -44334421 + MIR SINE MIR 38 150 -112 2101 141 39 30 chr15 41361587 41361948 -44333806 - THE1B LTR MaLR 0 364 1 1237 177 45 0 chr15 41362381 41362624 -44333130 - MER45B DNA AcHobo 0 1040 787 1959 99 0 0 chr15 41362626 41362889 -44332865 - AluSx SINE Alu -10 302 40 3724 142 4 0 chr15 41363353 41363901 -44331853 - MER41D LTR ERV1 -7 550 1 290 271 0 0 chr15 41364659 41364729 -44331025 + L2 LINE L2 3018 3087 -185 428 299 104 79 chr15 41364770 41365011 -44330743 + MIR SINE MIR 15 261 -1 1155 128 95 5 chr15 41365024 41365235 -44330519 - L1MB3 LINE L1 -1 6182 5953 449 267 72 56 chr15 41365268 41365463 -44330291 - L2 LINE L2 -1 3312 3115 1761 199 45 14 chr15 41365465 41365888 -44329866 + LTR37B LTR ERV1 33 468 0 330 306 183 16 chr15 41365892 41366144 -44329610 - L2 LINE L2 -189 3124 2831 192 148 82 131 chr15 41366860 41366921 -44328833 - L2 LINE L2 -20 3293 3236 * 313 327 28 37 chr15 41366920 41367027 -44328727 + L2 LINE L2 3166 3271 -1 992 156 131 10 chr15 41367147 41367346 -44328408 + MIR SINE MIR 9 231 -31 329 264 64 18 chr15 41367358 41367468 -44328286 + L3 LINE CR1 1350 1464 -113 499 261 176 0 chr15 41367491 41367667 -44328087 - MIR SINE MIR 0 262 56 204 205 0 0 chr15 41367895 41367934 -44327820 + (CCAA)n Simple_repeat Simple_repeat 1 39 0 186 167 0 0 chr15 41369928 41369964 -44325790 + CT-rich Low_complexity Low_complexity 2 37 0 792 147 67 13 chr15 41370917 41371067 -44324687 - MER65A LTR ERV1 -159 286 129 784 309 8 4 chr15 41371213 41371449 -44324305 + MIR SINE MIR 8 244 -18 609 270 135 26 chr15 41372534 41372764 -44322990 - MIR SINE MIR 0 262 8 205 80 0 0 chr15 41372933 41372958 -44322796 + (TG)n Simple_repeat Simple_repeat 1 25 0 560 277 51 19 chr15 41373004 41373234 -44322520 + MIR SINE MIR 3 244 -18 200 236 0 28 chr15 41373745 41373817 -44321937 + (CAGA)n Simple_repeat Simple_repeat 4 73 0 518 301 0 0 chr15 41373859 41374035 -44321719 + (CA)n Simple_repeat Simple_repeat 2 177 0 684 262 38 6 chr15 41375617 41375800 -44319954 + MIR SINE MIR 2 190 -72 264 293 45 38 chr15 41376023 41376139 -44319615 + LTR16C LTR ERVL 358 477 -14 279 0 0 0 chr15 41376139 41376170 -44319584 + (TG)n Simple_repeat Simple_repeat 2 32 0 264 293 45 38 chr15 41376170 41376186 -44319568 + LTR16C LTR ERVL 477 491 0 725 194 18 67 chr15 41376191 41376441 -44319313 + L1MEc LINE L1 2157 2418 -3797 1660 215 60 58 chr15 41376441 41376603 -44319151 + MLT1C LTR MaLR 1 161 -306 1997 116 3 3 chr15 41376603 41376896 -44318858 - AluSg SINE Alu -17 293 1 1660 215 60 58 chr15 41376896 41377199 -44318555 + MLT1C LTR MaLR 161 467 0 725 194 18 67 chr15 41377199 41377243 -44318511 + L1MEc LINE L1 2418 2463 -3752 2079 133 146 8 chr15 41377243 41377619 -44318135 + MSTA LTR MaLR 1 428 0 725 194 18 67 chr15 41377619 41377716 -44318038 + L1MEc LINE L1 2463 2533 -3682 225 0 0 0 chr15 41377852 41377877 -44317877 + (A)n Simple_repeat Simple_repeat 1 25 0 355 250 26 20 chr15 41378111 41378263 -44317491 + L1MEc LINE L1 2934 3086 -3129 264 227 45 0 chr15 41378329 41378395 -44317359 + MIR SINE MIR 180 248 -14 329 278 11 44 chr15 41379868 41379958 -44315796 - L2 LINE L2 -3 3269 3183 2164 96 0 3 chr15 41380672 41380965 -44314789 + AluSc SINE Alu 1 292 -17 264 263 53 18 chr15 41381417 41381531 -44314223 + L2 LINE L2 2911 3028 -244 335 307 129 43 chr15 41381550 41381713 -44314041 - L3 LINE CR1 -17 1560 1384 548 275 70 50 chr15 41381752 41381952 -44313802 - MIR SINE MIR -51 211 8 400 172 0 0 chr15 41382266 41382330 -44313424 - MADE1 DNA Mariner -16 64 1 326 209 229 0 chr15 41382376 41382481 -44313273 + MIR3 SINE MIR 8 136 -72 2428 69 0 22 chr15 41382825 41383143 -44312611 + AluY SINE Alu 1 311 0 536 291 102 46 chr15 41383282 41383605 -44312149 - L2 LINE L2 -1 3312 2972 298 277 30 10 chr15 41383619 41383720 -44312034 + MIR SINE MIR 25 127 -81 2183 106 7 0 chr15 41385097 41385398 -44310356 + AluSx SINE Alu 1 303 -9 280 242 11 22 chr15 41385403 41385494 -44310260 + L1MC4 LINE L1 6614 6703 -1339 2644 111 72 0 chr15 41385771 41386186 -44309568 - MER65A LTR ERV1 0 445 1 732 167 0 23 chr15 41386255 41386387 -44309367 + FLAM_A SINE Alu 1 129 -4 310 333 51 14 chr15 41386508 41386646 -44309108 + MIR SINE MIR 69 211 -51 519 230 39 45 chr15 41387480 41387658 -44308096 - MER5B DNA MER1_type 0 178 2 404 299 57 13 chr15 41387679 41387836 -44307918 + MIR SINE MIR 2 165 -97 1141 160 39 74 chr15 41387838 41388094 -44307660 - MER34B LTR ERV1 -302 263 17 2466 190 62 44 chr15 41388107 41388892 -44306862 + L1ME LINE L1 4751 5552 -614 2293 101 0 0 chr15 41389616 41389924 -44305830 - AluSc SINE Alu -1 308 1 634 259 96 59 chr15 41390384 41390623 -44305131 + MIR SINE MIR 10 257 -5 216 200 0 0 chr15 41390655 41390700 -44305054 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 390 275 14 36 chr15 41390734 41390872 -44304882 + HsTC2 DNA Tc2 18 152 -1746 * 684 291 140 4 chr15 41390871 41391136 -44304618 + HsTC2 DNA Tc2 537 837 -1061 1713 124 102 42 chr15 41391270 41391624 -44304130 + THE1C LTR MaLR 1 375 0 238 241 0 0 chr15 41391690 41391744 -44304010 + HsTC2 DNA Tc2 1842 1895 -3 365 239 22 33 chr15 41391945 41392037 -44303717 + L1ME LINE L1 5548 5638 -526 2085 215 58 7 chr15 41392078 41392525 -44303229 - Charlie1a DNA MER1_type -985 470 1 338 221 93 0 chr15 41392531 41392617 -44303137 - L1ME LINE L1 -367 5803 5710 210 290 16 32 chr15 41392655 41392717 -44303037 + MIR SINE MIR 198 258 -4 327 250 39 47 chr15 41393323 41393451 -44302303 + LTR67 LTR ERVL 428 554 -3 33 0 0 0 chr15 41395043 41395076 -44300678 + AT_rich Low_complexity Low_complexity 1 33 0 377 271 77 40 chr15 41395285 41395452 -44300302 + MIR3 SINE MIR 16 182 -51 451 250 115 26 chr15 41396589 41396745 -44299009 + MIR SINE MIR 26 195 -67 778 185 210 0 chr15 41396767 41396967 -44298787 + Charlie1 DNA MER1_type 1 242 -2519 352 183 235 17 chr15 41396950 41397065 -44298689 + Charlie1 DNA MER1_type 2622 2761 0 * 329 160 40 80 chr15 41397612 41397687 -44298067 - LTR33A LTR ERVL -8 515 444 2156 110 0 3 chr15 41398215 41398516 -44297238 - AluSg SINE Alu -10 300 1 781 148 8 0 chr15 41398683 41398811 -44296943 + FLAM_C SINE Alu 1 129 -4 1717 159 10 3 chr15 41399217 41399513 -44296241 + AluJo SINE Alu 1 298 -14 1685 177 17 169 chr15 41399756 41400238 -44295516 - MLT1D LTR MaLR -2 503 126 4133 118 8 12 chr15 41400238 41400885 -44294869 + L1PA14 LINE L1 5518 6161 0 1685 177 17 169 chr15 41400885 41400995 -44294759 - MLT1D LTR MaLR -379 126 1 41 58 0 0 chr15 41401199 41401268 -44294486 + AT_rich Low_complexity Low_complexity 1 69 0 1798 118 4 7 chr15 41401447 41401727 -44294027 - AluSx SINE Alu 0 312 34 1786 150 7 0 chr15 41402255 41402549 -44293205 - AluJo SINE Alu -16 296 1 180 0 0 0 chr15 41402989 41403009 -44292745 + (T)n Simple_repeat Simple_repeat 1 20 0 1801 162 24 87 chr15 41403234 41403648 -44292106 - MLT1B LTR MaLR 0 390 3 953 178 29 0 chr15 41403901 41404075 -44291679 + MIR SINE MIR 41 219 -43 192 261 123 0 chr15 41404095 41404160 -44291594 - L2 LINE L2 0 3313 3241 436 325 38 13 chr15 41404174 41404331 -44291423 - MIR SINE MIR -3 259 99 340 323 0 0 chr15 41404711 41404804 -44290950 - MIR SINE MIR -78 130 38 354 291 67 15 chr15 41405288 41405422 -44290332 - MIR3 SINE MIR -48 160 20 224 194 0 0 chr15 41405445 41405481 -44290273 + L2 LINE L2 3233 3268 -4 2012 112 0 3 chr15 41405554 41405863 -44289891 - AluSq SINE Alu 0 308 1 5121 130 33 11 chr15 41406105 41407098 -44288656 - L1PA15 LINE L1 0 6165 5121 1081 187 10 0 chr15 41407098 41407296 -44288458 - AluJb SINE Alu -29 283 84 3251 199 15 6 chr15 41407296 41407969 -44287785 - L1PA15 LINE L1 -1014 5132 4454 * 4135 243 15 7 chr15 41407952 41409040 -44286714 - L1PA15 LINE L1 -2964 3182 2087 217 250 78 0 chr15 41409064 41409128 -44286626 - L2 LINE L2 -16 3297 3229 192 189 0 0 chr15 41409148 41409185 -44286569 - MIR SINE MIR -24 238 202 12697 68 9 0 chr15 41409710 41412140 -44283614 - L1PA6 LINE L1 0 6154 3703 237 266 76 0 chr15 41412842 41412921 -44282833 + L2 LINE L2 3153 3237 -35 180 226 132 0 chr15 41412928 41412981 -44282773 - MIR SINE MIR -20 242 183 198 311 76 30 chr15 41413596 41413728 -44282026 + MER5B DNA MER1_type 30 167 -11 531 247 60 22 chr15 41413960 41414142 -44281612 + MER5A DNA MER1_type 1 189 0 288 284 68 68 chr15 41415198 41415360 -44280394 + MIR SINE MIR 101 262 0 2102 116 0 3 chr15 41415732 41416034 -44279720 - AluSc SINE Alu -8 301 1 1102 176 19 24 chr15 41416221 41416431 -44279323 - MER6B DNA MER2_type 0 210 2 204 313 30 0 chr15 41416504 41416571 -44279183 + MIR SINE MIR 71 139 -123 314 226 87 26 chr15 41417277 41417392 -44278362 - MIR SINE MIR -121 141 20 883 203 14 59 chr15 41417423 41417645 -44278109 + MER58C DNA MER1_type 4 215 0 1932 147 3 10 chr15 41417916 41418230 -44277524 + AluJb SINE Alu 1 312 0 830 173 100 39 chr15 41418744 41419004 -44276750 + LTR37B LTR ERV1 193 468 0 279 366 35 21 chr15 41419151 41419293 -44276461 + MIR SINE MIR 48 191 -71 504 265 141 64 chr15 41419299 41419446 -44276308 + MIR SINE MIR 1 174 -88 2394 71 0 3 chr15 41419446 41419754 -44276000 + AluY SINE Alu 2 308 -3 504 265 141 64 chr15 41419754 41419840 -44275914 + MIR SINE MIR 174 252 -10 196 263 237 0 chr15 41420005 41420081 -44275673 - MIR SINE MIR -95 113 20 192 340 0 0 chr15 41420729 41420779 -44274975 - L2 LINE L2 -12 3260 3211 23 68 0 0 chr15 41421161 41421205 -44274549 + AT_rich Low_complexity Low_complexity 1 44 0 490 229 29 9 chr15 41421474 41421579 -44274175 - MLT1L LTR MaLR -364 251 145 1947 131 3 0 chr15 41421970 41422261 -44273493 + AluSx SINE Alu 1 292 -20 186 375 0 0 chr15 41422623 41422687 -44273067 - L2 LINE L2 -11 3302 3239 376 250 26 70 chr15 41422890 41423046 -44272708 - MER103 DNA DNA -16 150 2 274 254 51 0 chr15 41424767 41424826 -44270928 + MIR SINE MIR 31 92 -170 560 217 125 38 chr15 41424843 41425027 -44270727 + MIR SINE MIR 58 257 -5 182 238 95 0 chr15 41427360 41427402 -44268352 + L2 LINE L2 3156 3201 -71 198 0 0 0 chr15 41429213 41429235 -44266519 + (GA)n Simple_repeat Simple_repeat 2 23 0 272 344 56 36 chr15 41430944 41431139 -44264615 - MIR SINE MIR -3 259 61 245 292 69 15 chr15 41431256 41431386 -44264368 + MER103 DNA DNA 23 159 -7 648 285 108 20 chr15 41431778 41432169 -44263585 + MLT1J LTR MaLR 32 480 -31 229 289 107 0 chr15 41432858 41432979 -44262775 + L2 LINE L2 3138 3271 -1 230 306 149 8 chr15 41433457 41433578 -44262176 - MIR SINE MIR -94 168 31 416 261 97 36 chr15 41433696 41433862 -44261892 - MIR SINE MIR -50 212 37 473 204 174 141 chr15 41434134 41434502 -44261252 + L1ME4a LINE L1 5712 6091 -30 280 203 36 11 chr15 41437985 41438073 -44257681 - L1MB4 LINE L1 0 6179 6068 569 111 11 0 chr15 41438901 41438991 -44256763 - L1MB4 LINE L1 -8 6172 6082 472 284 60 83 chr15 41439011 41439229 -44256525 - MIR SINE MIR -20 242 30 37 23 0 0 chr15 41439699 41439743 -44256011 + AT_rich Low_complexity Low_complexity 1 44 0 209 250 12 71 chr15 41439796 41439880 -44255874 - MIR3 SINE MIR -12 196 118 3196 78 68 17 chr15 41441206 41441624 -44254130 + L1MA1 LINE L1 5805 6200 -102 2688 100 8 0 chr15 41441624 41441985 -44253769 + THE1B LTR MaLR 1 364 0 3196 78 68 17 chr15 41441985 41442012 -44253742 + L1MA1 LINE L1 6200 6224 -78 213 0 81 0 chr15 41442012 41442049 -44253705 + (TA)n Simple_repeat Simple_repeat 1 40 0 3196 78 68 17 chr15 41442049 41442075 -44253679 + L1MA1 LINE L1 6224 6301 -1 219 69 0 0 chr15 41442095 41442124 -44253630 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 259 179 274 12 chr15 41442134 41442218 -44253536 - MER5A DNA MER1_type -27 162 57 198 289 105 26 chr15 41442289 41442403 -44253351 + L2 LINE L2 3146 3268 -4 182 315 157 0 chr15 41443330 41443419 -44252335 + MIR SINE MIR 157 259 -3 1091 132 42 0 chr15 41445149 41445316 -44250438 - AluSx SINE Alu -7 305 132 579 56 50 45 chr15 41445317 41445496 -44250258 + (TA)n Simple_repeat Simple_repeat 1 180 0 934 105 0 23 chr15 41445496 41445629 -44250125 - AluSx SINE Alu -182 130 1 299 257 133 9 chr15 41448364 41448477 -44247277 - L1ME4a LINE L1 -197 5924 5798 183 313 15 0 chr15 41448691 41448758 -44246996 + MIR SINE MIR 163 230 -32 211 297 126 27 chr15 41448895 41449006 -44246748 - MIR SINE MIR -4 258 137 305 314 74 11 chr15 41449539 41449714 -44246040 - MIR3 SINE MIR -7 201 16 674 188 147 0 chr15 41451243 41451413 -44244341 + MIR SINE MIR 16 210 -52 1260 198 54 0 chr15 41453290 41453568 -44242186 - MER33 DNA MER1_type -31 293 1 254 305 30 50 chr15 41455022 41455222 -44240532 + MLT1L LTR MaLR 368 563 -52 290 113 42 84 chr15 41457322 41457393 -44238361 - MER106B DNA MER1_type -1 1058 991 * 389 216 0 72 chr15 41457388 41457496 -44238258 - MER106B DNA MER1_type -914 145 46 207 0 0 0 chr15 41457496 41457519 -44238235 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 389 216 0 72 chr15 41457519 41457535 -44238219 - MER106B DNA MER1_type -1013 46 30 829 160 77 0 chr15 41457679 41457848 -44237906 + MER5A DNA MER1_type 2 183 -6 201 139 0 0 chr15 41459956 41459999 -44235755 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 2034 139 76 134 chr15 41460377 41460838 -44234916 + Tigger2 DNA MER2_type 1 2718 0 383 198 16 79 chr15 41461351 41461477 -44234277 - L1M4 LINE L1 -1148 4998 4881 289 228 38 13 chr15 41461481 41461560 -44234194 - L1M4 LINE L1 -1336 4810 4730 252 280 138 19 chr15 41462726 41462994 -44232760 + L1ME4a LINE L1 5701 6000 -121 2410 80 0 3 chr15 41463645 41463946 -44231808 + AluSg SINE Alu 1 300 -10 551 179 154 17 chr15 41463964 41464081 -44231673 + FLAM_A SINE Alu 1 133 0 441 0 0 0 chr15 41466415 41466464 -44229290 + (CA)n Simple_repeat Simple_repeat 1 49 0 349 319 56 14 chr15 41466531 41466675 -44229079 - MIR3 SINE MIR -23 185 36 183 80 0 0 chr15 41466720 41466745 -44229009 + (CA)n Simple_repeat Simple_repeat 2 26 0 194 222 0 37 chr15 41467268 41467322 -44228432 + L2 LINE L2 3215 3266 -6 205 224 102 0 chr15 41469319 41469368 -44226386 - L2 LINE L2 0 3272 3219 317 250 0 0 chr15 41469409 41469485 -44226269 - MIR SINE MIR -186 76 1 333 250 11 11 chr15 41471983 41472075 -44223679 - L1ME3 LINE L1 -9 6153 6062 2817 228 13 21 chr15 41472082 41472153 -44223601 - L1ME3 LINE L1 -156 6006 5936 2398 57 13 27 chr15 41472153 41472454 -44223300 - AluY SINE Alu -14 297 1 2817 228 13 21 chr15 41472454 41473053 -44222701 - L1ME3 LINE L1 -226 5936 5341 456 324 170 41 chr15 41475148 41476041 -44219713 + L2 LINE L2 1859 2866 -448 364 266 149 32 chr15 41476606 41476794 -44218960 + L1ME2 LINE L1 141 350 -5855 652 276 120 40 chr15 41477193 41478075 -44217679 + L1ME2 LINE L1 813 1820 -4512 2219 112 0 40 chr15 41478145 41478467 -44217287 + AluSc SINE Alu 1 309 0 386 254 50 86 chr15 41478551 41478931 -44216823 + L1ME2 LINE L1 2060 2392 -3823 * 1904 248 123 38 chr15 41478929 41480530 -44215224 + L1ME2 LINE L1 4512 6402 -1 230 260 130 0 chr15 41480611 41480711 -44215043 - HAL1 LINE L1 -129 2378 2266 305 267 129 52 chr15 41480799 41481009 -44214745 - HAL1 LINE L1 -2191 316 91 326 212 100 98 chr15 41481529 41481713 -44214041 + MIR SINE MIR 4 187 -75 337 241 46 0 chr15 41482425 41482512 -44213242 + MIR SINE MIR 58 148 -60 265 229 16 0 chr15 41482515 41482576 -44213178 - L2 LINE L2 -5 3308 3247 350 288 75 52 chr15 41482626 41482838 -44212916 + MIR SINE MIR 18 234 -28 205 303 79 0 chr15 41483163 41483239 -44212515 - MIR3 SINE MIR -122 86 5 355 204 148 19 chr15 41484233 41484317 -44211437 - MIR SINE MIR -133 129 27 1888 148 4 0 chr15 41484317 41484594 -44211160 - AluSx SINE Alu -12 300 23 355 204 148 19 chr15 41484594 41484617 -44211137 - MIR SINE MIR -235 27 8 914 137 8 0 chr15 41484634 41484765 -44210989 + AluJb SINE Alu 2 133 -179 329 290 21 35 chr15 41487319 41487464 -44208290 + MIR3 SINE MIR 36 178 -30 1766 160 7 20 chr15 41487592 41487924 -44207830 + AluJo SINE Alu 1 312 0 295 281 44 89 chr15 41488578 41488642 -44207112 + MIR SINE MIR 123 179 -83 2127 125 30 0 chr15 41488642 41488937 -44206817 + AluSx SINE Alu 1 304 -8 295 281 44 89 chr15 41488937 41489007 -44206747 + MIR SINE MIR 179 251 -11 246 208 135 21 chr15 41489635 41489731 -44206023 + MIR SINE MIR 98 204 -58 349 221 53 0 chr15 41489736 41489831 -44205923 - MER5B DNA MER1_type -78 100 1 345 233 35 0 chr15 41490046 41490132 -44205622 + L1M4 LINE L1 4031 4119 -2027 190 324 19 38 chr15 41491253 41491358 -44204396 - L3 LINE CR1 -1357 220 118 498 17 0 0 chr15 41491515 41491574 -44204180 + (TG)n Simple_repeat Simple_repeat 1 59 0 1949 121 24 0 chr15 41492644 41492934 -44202820 + AluSq SINE Alu 1 297 -16 1969 129 4 0 chr15 41494694 41495020 -44200734 - AluSx SINE Alu 0 328 2 224 330 126 10 chr15 41495101 41495204 -44200550 - MIR SINE MIR -57 151 37 256 304 143 24 chr15 41495635 41495829 -44199925 + MIR SINE MIR 17 229 -33 350 107 93 27 chr15 41497528 41497603 -44198151 - MER53 DNA DNA 0 189 110 606 289 117 11 chr15 41498163 41498436 -44197318 + L1ME LINE L1 5518 5819 -302 445 229 74 13 chr15 41499278 41499467 -44196287 + MIR SINE MIR 16 216 -46 1531 151 30 50 chr15 41500545 41500844 -44194910 - AluJo SINE Alu -19 293 1 1339 181 0 0 chr15 41502204 41502436 -44193318 - AluJb SINE Alu -80 232 1 7288 109 74 0 chr15 41502569 41503675 -44192079 + L1MA2 LINE L1 1707 2894 -4671 3349 101 25 4 chr15 41503669 41504252 -44191502 + L1MA2 LINE L1 6547 7148 -576 * 291 19 6 6 chr15 41504258 41504300 -44191454 - L1M3 LINE L1 -593 5707 5677 210 37 0 0 chr15 41504315 41504342 -44191412 + (TG)n Simple_repeat Simple_repeat 2 28 0 467 91 52 53 chr15 41504351 41504413 -44191341 - L1ME LINE L1 -393 5773 5713 3205 93 36 30 chr15 41504413 41504933 -44190821 + L1MA2 LINE L1 7196 7722 -1 467 91 52 53 chr15 41504933 41504957 -44190797 - L1ME LINE L1 -453 5713 5690 580 279 176 46 chr15 41506816 41507207 -44188547 + L2 LINE L2 2867 3308 -5 254 261 54 63 chr15 41507407 41507518 -44188236 - MIR SINE MIR 0 262 153 862 66 0 0 chr15 41507734 41507840 -44187914 - AluSq SINE Alu -62 251 146 940 267 23 23 chr15 41510726 41510984 -44184770 + MIR SINE MIR 5 262 0 180 297 188 0 chr15 41512325 41512389 -44183365 - L2 LINE L2 -11 3261 3186 546 303 22 32 chr15 41513193 41513378 -44182376 - MIR SINE MIR 0 262 80 339 297 10 10 chr15 41514458 41514559 -44181195 - MIR SINE MIR -6 256 156 1931 99 3 81 chr15 41515384 41515706 -44180048 - AluSx SINE Alu -15 297 1 575 238 166 7 chr15 41516197 41516348 -44179406 - MIR3 SINE MIR -11 197 23 213 266 76 13 chr15 41517986 41518065 -44177689 + MIR SINE MIR 23 106 -156 367 308 101 19 chr15 41518123 41518282 -44177472 + MIR SINE MIR 78 249 -13 2041 110 23 3 chr15 41518458 41518757 -44176997 + AluSx SINE Alu 1 305 -7 1625 154 36 14 chr15 41519256 41519536 -44176218 + AluJo SINE Alu 1 286 -26 623 75 0 0 chr15 41519562 41519642 -44176112 - MADE1 DNA Mariner 0 80 1 222 313 61 48 chr15 41520692 41520784 -44174970 - L3b LINE CR1 -86 1497 1401 1603 146 68 4 chr15 41520784 41521064 -44174690 - AluSx SINE Alu -14 298 1 222 313 61 48 chr15 41521064 41521118 -44174636 - L3b LINE CR1 -182 1401 1349 243 0 0 0 chr15 41522700 41522727 -44173027 + (CA)n Simple_repeat Simple_repeat 2 28 0 197 248 66 80 chr15 41523333 41523470 -44172284 - L3 LINE CR1 -243 1334 1200 208 93 23 23 chr15 41524601 41524644 -44171110 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 333 313 73 31 chr15 41525500 41525692 -44170062 - L2 LINE L2 -191 3081 2882 230 231 0 0 chr15 41526113 41526165 -44169589 + (ATG)n Simple_repeat Simple_repeat 3 54 0 182 37 37 0 chr15 41527088 41527115 -44168639 + (CAAAAA)n Simple_repeat Simple_repeat 1 28 0 185 283 33 17 chr15 41527165 41527225 -44168529 - MIR SINE MIR -75 133 73 285 308 140 7 chr15 41528731 41528874 -44166880 + MER5B DNA MER1_type 1 162 -16 281 333 40 10 chr15 41528802 41528901 -44166853 - MER5A DNA MER1_type -85 104 3 * 2249 65 24 0 chr15 41528901 41529192 -44166562 - AluSp SINE Alu -15 298 1 258 158 70 18 chr15 41529230 41529287 -44166467 - MIR SINE MIR -80 182 123 231 250 24 60 chr15 41530386 41530470 -44165284 + MIR SINE MIR 17 97 -111 2159 59 11 0 chr15 41531219 41531492 -44164262 + AluY SINE Alu 27 302 -9 226 318 18 45 chr15 41531766 41531876 -44163878 + L2 LINE L2 2958 3064 -208 266 279 168 28 chr15 41532247 41532426 -44163328 + L3 LINE CR1 1316 1519 -58 250 306 104 23 chr15 41532593 41532750 -44163004 - MIR SINE MIR -36 172 19 2304 84 0 3 chr15 41533242 41533550 -44162204 + AluSq SINE Alu 1 307 -6 892 199 108 101 chr15 41533950 41534246 -44161508 + AluJo SINE Alu 2 299 -3 338 320 90 40 chr15 41534260 41534538 -44161216 + L2 LINE L2 2670 2961 -353 311 290 125 54 chr15 41535920 41536144 -44159610 - MIR SINE MIR -10 252 13 476 314 148 6 chr15 41536705 41536874 -44158880 - MER91A DNA MER1_type -1 195 3 567 282 60 35 chr15 41537160 41537409 -44158345 + MIR SINE MIR 3 254 -8 731 218 233 62 chr15 41537610 41538000 -44157754 + MLT1D LTR MaLR 4 460 -45 319 200 14 14 chr15 41538019 41538089 -44157665 - MER5A DNA MER1_type -105 84 15 2256 97 10 0 chr15 41538567 41538876 -44156878 + AluSp SINE Alu 1 312 -1 332 231 14 91 chr15 41541149 41541214 -44154540 + L1ME3A LINE L1 5988 6038 -132 1987 119 0 56 chr15 41541214 41541534 -44154220 - AluSx SINE Alu -10 302 1 332 231 14 91 chr15 41541534 41541611 -44154143 + L1ME3A LINE L1 6038 6119 -51 181 317 50 0 chr15 41541837 41541897 -44153857 - L2 LINE L2 -17 3296 3234 240 35 0 0 chr15 41542966 41542995 -44152759 + (A)n Simple_repeat Simple_repeat 1 29 0 523 310 13 0 chr15 41543432 41543590 -44152164 + MIR SINE MIR 85 244 -18 824 268 136 9 chr15 41545058 41545397 -44150357 + L1ME3A LINE L1 5789 6170 0 225 0 0 0 chr15 41546750 41546775 -44148979 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 1245 187 21 27 chr15 41547388 41547731 -44148023 - L1M4 LINE L1 -1443 4703 4308 1449 149 9 0 chr15 41547757 41547978 -44147776 - AluSg/x SINE Alu -3 309 87 3753 228 53 20 chr15 41547992 41548373 -44147381 - L1M4 LINE L1 -1828 4318 3951 2337 183 50 60 chr15 41548373 41548991 -44146763 - LTR9 LTR ERV1 0 612 1 3753 228 53 20 chr15 41548991 41549687 -44146067 - L1M4 LINE L1 -2195 3951 3206 185 250 100 75 chr15 41549790 41549910 -44145844 - L2 LINE L2 -4 3268 3146 204 253 71 50 chr15 41549979 41550078 -44145676 - MER91C DNA MER1_type -3 137 37 1381 112 0 54 chr15 41550117 41550340 -44145414 + MER4D LTR ERV1 1 211 -692 1702 104 9 4 chr15 41550340 41550571 -44145183 + AluSc SINE Alu 1 232 -77 2072 79 8 8 chr15 41600778 41601044 -44094710 + AluSx SINE Alu 31 296 -16 825 118 7 30 chr15 41601494 41601629 -44094125 + FLAM_C SINE Alu 1 132 -1 2683 151 74 35 chr15 41601690 41602179 -44093575 + LTR12 LTR ERV1 1 508 -206 335 209 47 0 chr15 41602986 41603072 -44092682 + LTR67 LTR ERVL 468 557 0 203 312 0 0 chr15 41603155 41603232 -44092522 + L2 LINE L2 2913 2989 -283 2312 109 0 0 chr15 41603751 41604054 -44091700 - AluSg1 SINE Alu -6 303 1 291 279 150 14 chr15 41604075 41604222 -44091532 + MIR3 SINE MIR 16 182 -26 186 43 0 0 chr15 41604292 41604315 -44091439 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 242 224 0 0 chr15 41604898 41604947 -44090807 + L1MA9 LINE L1 6213 6261 -51 2350 67 0 17 chr15 41605183 41605483 -44090271 - AluY SINE Alu -16 295 1 22 0 0 0 chr15 41606559 41606581 -44089173 + AT_rich Low_complexity Low_complexity 1 22 0 2165 102 0 11 chr15 41606589 41606906 -44088848 + AluSx SINE Alu 1 314 0 2218 105 7 0 chr15 41607483 41607779 -44087975 + AluSx SINE Alu 1 298 -14 225 340 82 34 chr15 41607835 41608188 -44087566 + L2 LINE L2 2475 2844 -470 2251 176 135 2 chr15 41609221 41609664 -44086090 + MLT1D LTR MaLR 4 505 0 239 305 85 0 chr15 41609964 41610046 -44085708 + MIR SINE MIR 23 111 -151 1274 204 184 14 chr15 41610332 41610690 -44085064 - LTR16C LTR ERVL 0 491 73 756 120 17 8 chr15 41610906 41611023 -44084731 - FLAM_C SINE Alu -24 119 2 439 176 185 19 chr15 41611044 41611152 -44084602 - FLAM_A SINE Alu -7 126 1 2238 131 0 0 chr15 41611156 41611469 -44084285 - AluSq SINE Alu 0 313 1 1861 116 34 55 chr15 41611479 41611772 -44083982 - AluSx SINE Alu -25 287 1 2082 123 10 23 chr15 41611774 41612082 -44083672 - AluSx SINE Alu -8 304 1 1670 136 97 0 chr15 41612539 41612796 -44082958 - AluJb SINE Alu -30 282 1 1619 137 35 3 chr15 41613073 41613357 -44082397 + L1MA2 LINE L1 6012 6304 0 252 288 27 0 chr15 41613740 41613813 -44081941 + MLT1J LTR MaLR 99 173 -338 202 132 26 0 chr15 41614394 41614432 -44081322 + A-rich Low_complexity Low_complexity 2 40 0 1884 155 21 3 chr15 41614516 41614807 -44080947 + AluJo SINE Alu 14 309 -3 1446 168 27 12 chr15 41615106 41615362 -44080392 - AluJb SINE Alu -14 298 39 21 0 0 0 chr15 41615889 41615910 -44079844 + AT_rich Low_complexity Low_complexity 1 21 0 278 154 0 58 chr15 41615928 41615980 -44079774 + MER112 DNA MER1_type 2 50 -210 370 0 0 39 chr15 41616000 41616052 -44079702 + (CA)n Simple_repeat Simple_repeat 2 51 0 678 274 130 45 chr15 41616092 41616555 -44079199 + MLT1J LTR MaLR 2 503 -8 454 245 0 27 chr15 41616560 41616707 -44079047 + MER112 DNA MER1_type 111 253 -7 1640 163 32 18 chr15 41617229 41617511 -44078243 - AluJo SINE Alu -26 286 1 21 0 0 0 chr15 41617583 41617604 -44078150 + AT_rich Low_complexity Low_complexity 1 21 0 1806 178 0 10 chr15 41618019 41618312 -44077442 - AluJb SINE Alu -22 290 1 1873 152 3 7 chr15 41619184 41619473 -44076281 - AluJb SINE Alu -17 295 8 298 286 38 0 chr15 41619580 41619685 -44076069 + MIR SINE MIR 134 242 -20 2194 116 10 0 chr15 41619702 41619996 -44075758 + AluSq SINE Alu 1 297 -16 1257 263 104 41 chr15 41620121 41620611 -44075143 - MLT1H LTR MaLR -7 542 22 1798 178 28 0 chr15 41620623 41620929 -44074825 + AluJb SINE Alu 1 312 0 755 232 60 0 chr15 41620943 41621094 -44074660 + FRAM SINE Alu 2 161 -15 2233 186 87 38 chr15 41621518 41622023 -44073731 + MLT1F LTR MaLR 10 539 -3 1547 145 51 30 chr15 41622025 41622321 -44073433 + L1MB7 LINE L1 5864 6165 -19 183 80 0 0 chr15 41622325 41622350 -44073404 + (TG)n Simple_repeat Simple_repeat 2 26 0 377 320 33 4 chr15 41622351 41622621 -44073133 + MLT1F-int LTR MaLR 61 453 -918 192 111 0 0 chr15 41622631 41622667 -44073087 + (T)n Simple_repeat Simple_repeat 1 36 0 1012 112 53 6 chr15 41622667 41622837 -44072917 - MSTB LTR MaLR -38 388 211 454 274 68 0 chr15 41622837 41622983 -44072771 + MLT1F-int LTR MaLR 451 606 -765 225 267 53 13 chr15 41623203 41623278 -44072476 + MLT1F-int LTR MaLR 718 795 -576 2435 97 0 0 chr15 41623512 41623823 -44071931 + AluSx SINE Alu 1 311 -1 839 144 8 0 chr15 41623847 41623979 -44071775 + AluJb SINE Alu 1 133 -179 642 249 82 115 chr15 41624003 41624428 -44071326 + MLT1F-int LTR MaLR 961 1371 0 1622 231 71 32 chr15 41624428 41624866 -44070888 + MLT1F LTR MaLR 1 455 -87 2165 138 0 3 chr15 41624957 41625269 -44070485 + AluSx SINE Alu 1 311 -1 732 163 16 0 chr15 41626615 41626738 -44069016 + FLAM_A SINE Alu 1 125 -8 1526 167 14 37 chr15 41627278 41627572 -44068182 - AluJb SINE Alu -21 291 5 1622 181 7 0 chr15 41627701 41627988 -44067766 + L1PA16 LINE L1 5876 6164 -2 1972 157 0 23 chr15 41628065 41628371 -44067383 - AluJo SINE Alu -13 299 1 211 281 146 0 chr15 41628436 41628525 -44067229 + L2 LINE L2 3197 3298 -15 2062 158 50 17 chr15 41628624 41628732 -44067022 + L1MC4 LINE L1 6993 7096 -946 2141 107 10 3 chr15 41628732 41629022 -44066732 - AluSx SINE Alu -20 292 1 2062 158 50 17 chr15 41629022 41629330 -44066424 + L1MC4 LINE L1 7096 7423 -619 1914 165 76 33 chr15 41629329 41629499 -44066255 + L1MC4 LINE L1 7627 7788 -254 * 2259 108 3 13 chr15 41629499 41629814 -44065940 - AluSx SINE Alu 0 312 1 1914 165 76 33 chr15 41629814 41630038 -44065716 + L1MC4 LINE L1 7788 8038 -4 2065 120 7 0 chr15 41630996 41631311 -44064443 + AluSx SINE Alu 1 317 0 1514 174 14 44 chr15 41631430 41631723 -44064031 - AluJo SINE Alu -27 285 2 2078 126 7 0 chr15 41633596 41633881 -44061873 + AluSx SINE Alu 1 287 -25 1448 141 3 90 chr15 41634054 41634367 -44061387 + AluJo SINE Alu 21 308 0 2207 75 0 0 chr15 41634570 41634837 -44060917 + AluSp SINE Alu 1 267 -46 1153 98 15 5 chr15 41634937 41635104 -44060650 + LTR12 LTR ERV1 142 714 0 570 226 43 43 chr15 41635304 41635468 -44060286 - MLT1B LTR MaLR -15 375 212 343 256 81 38 chr15 41635527 41635687 -44060067 - MLT1B LTR MaLR -198 167 1 666 134 0 0 chr15 41635755 41635852 -44059902 - FLAM_A SINE Alu -11 131 35 259 194 81 0 chr15 41636903 41636965 -44058789 + AluS SINE Alu 1 67 -236 295 119 17 17 chr15 41636965 41637024 -44058730 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 180 179 39 0 chr15 41637021 41637099 -44058655 + (TA)n Simple_repeat Simple_repeat 1 81 0 * 2144 88 0 34 chr15 41637100 41637396 -44058358 - AluY SINE Alu -25 286 1 7686 21 11 0 chr15 41637413 41638749 -44057005 + L1PA3 LINE L1 4802 6152 -3 4067 179 46 42 chr15 41638766 41638979 -44056775 + Charlie1 DNA MER1_type 1778 1989 -772 1569 194 23 16 chr15 41638979 41639288 -44056466 - AluJb SINE Alu -1 311 1 4067 179 46 42 chr15 41639288 41639469 -44056285 + Charlie1 DNA MER1_type 1989 2168 -593 1999 142 0 0 chr15 41639469 41639787 -44055967 + AluJb SINE Alu 1 318 0 4067 179 46 42 chr15 41639787 41639888 -44055866 + Charlie1 DNA MER1_type 2168 2267 -494 2101 130 3 0 chr15 41639888 41640181 -44055573 + AluSq SINE Alu 1 294 -19 4067 179 46 42 chr15 41640181 41640415 -44055339 + Charlie1 DNA MER1_type 2267 2499 -262 11140 27 4 111 chr15 41640415 41641945 -44053809 - SVA Other Other -10 1376 10 4067 179 46 42 chr15 41641945 41642175 -44053579 + Charlie1 DNA MER1_type 2499 2746 -15 8130 55 8 7 chr15 41642882 41643888 -44051866 + LTR13 LTR ERVK 1 1007 0 1205 159 156 33 chr15 41644043 41644345 -44051409 + MER44D DNA MER2_type 1 609 0 22 56 0 0 chr15 41645223 41645259 -44050495 + GC_rich Low_complexity Low_complexity 1 36 0 206 146 0 18 chr15 41645271 41645326 -44050428 + (CCCCAG)n Simple_repeat Simple_repeat 3 56 0 267 236 0 28 chr15 41645597 41645669 -44050085 + T-rich Low_complexity Low_complexity 4 73 0 258 301 214 18 chr15 41645672 41645901 -44049853 + L2 LINE L2 3015 3288 -25 387 60 0 0 chr15 41646388 41646438 -44049316 + (CA)n Simple_repeat Simple_repeat 2 51 0 3227 136 6 28 chr15 41646980 41647253 -44048501 - LOR1a LTR ERV1 0 497 239 1968 120 54 42 chr15 41647253 41647586 -44048168 + MER1B DNA MER1_type 1 337 0 3227 136 6 28 chr15 41647586 41647820 -44047934 - LOR1a LTR ERV1 -258 239 1 1989 142 39 70 chr15 41648005 41648370 -44047384 - LTR56 LTR ERV1 0 445 95 2028 138 0 0 chr15 41648370 41648666 -44047088 - AluJb SINE Alu -5 307 12 1989 142 39 70 chr15 41648666 41648759 -44046995 - LTR56 LTR ERV1 -350 95 1 2211 96 0 3 chr15 41648942 41649244 -44046510 + AluSc SINE Alu 1 301 -8 382 232 42 0 chr15 41649517 41649685 -44046069 + (TA)n Simple_repeat Simple_repeat 2 176 0 2057 171 59 13 chr15 41649838 41650229 -44045525 - MER87 LTR ERV1 0 541 133 1585 150 49 7 chr15 41650229 41650516 -44045238 + AluJb SINE Alu 1 299 -13 493 290 61 90 chr15 41650577 41650930 -44044824 - L2 LINE L2 -80 3233 2892 2174 112 0 0 chr15 41650930 41651226 -44044528 + AluSx SINE Alu 1 296 -16 493 290 61 90 chr15 41651226 41651282 -44044472 - L2 LINE L2 -421 2892 2836 1388 216 75 57 chr15 41651410 41651773 -44043981 + L1M4 LINE L1 3860 4236 -1910 2118 128 0 3 chr15 41651773 41652078 -44043676 + AluSx SINE Alu 1 304 -8 1388 216 75 57 chr15 41652078 41652224 -44043530 + L1M4 LINE L1 4236 4378 -1768 1992 151 0 0 chr15 41652228 41652527 -44043227 + AluJb SINE Alu 1 299 -13 347 194 45 0 chr15 41653371 41653438 -44042316 + L1MC4 LINE L1 6640 6709 -1333 219 69 0 0 chr15 41654298 41654327 -44041427 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 361 294 103 22 chr15 41655976 41656160 -44039594 + MIR SINE MIR 35 233 -29 1848 153 0 14 chr15 41656185 41656480 -44039274 + AluSx SINE Alu 1 291 -21 1982 96 3 75 chr15 41657384 41657733 -44038021 - AluSx SINE Alu 0 326 1 268 281 156 69 chr15 41658487 41658647 -44037107 - MIR3 SINE MIR -21 187 14 196 260 41 41 chr15 41659738 41659811 -44035943 - MIR SINE MIR -147 115 43 225 0 0 0 chr15 41660964 41660989 -44034765 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2088 105 23 0 chr15 41662257 41662563 -44033191 + AluSp SINE Alu 1 313 0 687 311 37 17 chr15 41662844 41663085 -44032669 + MIR SINE MIR 2 247 -15 1800 123 0 34 chr15 41664385 41664677 -44031077 + AluJb SINE Alu 12 293 -19 259 361 7 13 chr15 41665020 41665117 -44030637 + MIR SINE MIR 32 132 -76 191 182 0 0 chr15 41665118 41665151 -44030603 + MIR SINE MIR 109 141 -67 1303 156 7 78 chr15 41665187 41665494 -44030260 + AluJo SINE Alu 28 312 0 7924 57 1 0 chr15 41665503 41666468 -44029286 - LTR5 LTR ERVK -3 966 1 1562 177 18 0 chr15 41666475 41666752 -44029002 + AluJb SINE Alu 1 282 -30 225 94 0 0 chr15 41666756 41666788 -44028966 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 258 237 23 0 chr15 41667344 41667451 -44028303 - MER5A DNA MER1_type -76 113 4 457 258 84 13 chr15 41668005 41668108 -44027646 + MER96 DNA MER1_type? 4 98 -77 2318 70 3 3 chr15 41668108 41668410 -44027344 - AluY SINE Alu -9 302 1 1765 168 0 19 chr15 41668413 41668729 -44027025 - AluJo SINE Alu -2 310 1 457 258 84 13 chr15 41668729 41668776 -44026978 + MER96 DNA MER1_type? 99 169 -6 228 204 167 0 chr15 41668939 41668993 -44026761 + L2 LINE L2 3210 3272 0 1938 188 0 9 chr15 41669389 41669724 -44026030 + MER58B DNA MER1_type 7 338 -3 1878 138 0 14 chr15 41670008 41670347 -44025407 - AluJb SINE Alu 0 312 1 281 268 170 39 chr15 41671221 41671374 -44024380 - MIR3 SINE MIR 0 208 36 1471 39 0 0 chr15 41671588 41671766 -44023988 + AluY SINE Alu 128 305 -6 2343 97 0 0 chr15 41671885 41672194 -44023560 + AluSx SINE Alu 1 309 -3 1134 194 68 23 chr15 41672452 41672715 -44023039 + ORSL DNA AcHobo 1 275 0 1506 173 42 3 chr15 41673055 41673226 -44022528 - AluJo SINE Alu -7 305 117 264 100 0 0 chr15 41673226 41673266 -44022488 + (TAG)n Simple_repeat Simple_repeat 2 41 0 1506 173 42 3 chr15 41673266 41673377 -44022377 - AluJo SINE Alu -195 117 12 226 330 85 25 chr15 41673398 41673516 -44022238 + L3 LINE CR1 1379 1503 -74 21 57 0 0 chr15 41674064 41674099 -44021655 + AT_rich Low_complexity Low_complexity 1 35 0 255 236 20 31 chr15 41676495 41676602 -44019152 + MIR SINE MIR 2 106 -102 248 221 35 58 chr15 41676647 41676733 -44019021 + L1ME4a LINE L1 5976 6059 -62 2290 71 3 0 chr15 41676733 41677027 -44018727 - AluSx SINE Alu -14 298 4 440 252 120 28 chr15 41677117 41677322 -44018432 - MIR SINE MIR -42 220 11 547 273 58 12 chr15 41677449 41677621 -44018133 - MIR SINE MIR 0 262 83 370 287 52 17 chr15 41678073 41678188 -44017566 + MIR SINE MIR 71 189 -73 427 325 115 56 chr15 41679114 41679379 -44016375 + L1ME1 LINE L1 5414 5717 -449 2017 116 7 0 chr15 41679379 41679671 -44016083 - AluSx SINE Alu -18 294 1 427 325 115 56 chr15 41679671 41679848 -44015906 + L1ME1 LINE L1 5717 5882 -284 482 79 0 0 chr15 41680020 41680083 -44015671 - Alu SINE Alu -246 64 2 254 261 142 35 chr15 41680107 41680368 -44015386 - L1ME4a LINE L1 0 6121 5833 1381 139 0 0 chr15 41680368 41680577 -44015177 - AluJb SINE Alu -19 293 85 25 99 0 0 chr15 41680677 41680758 -44014996 + AT_rich Low_complexity Low_complexity 1 81 0 2013 180 72 48 chr15 41680770 41681185 -44014569 + MLT1D LTR MaLR 10 441 -64 1921 99 0 4 chr15 41681185 41681484 -44014270 + AluSx SINE Alu 21 318 0 2013 180 72 48 chr15 41681484 41681551 -44014203 + MLT1D LTR MaLR 441 505 0 843 274 46 20 chr15 41681618 41681942 -44013812 - L1ME4a LINE L1 -389 5732 5414 598 187 175 12 chr15 41681964 41682130 -44013624 - AluJo SINE Alu -1 311 119 180 226 0 0 chr15 41682492 41682523 -44013231 + MIR SINE MIR 42 72 -136 1159 118 65 5 chr15 41682830 41683016 -44012738 - AluSc SINE Alu -17 292 96 1403 129 4 17 chr15 41683119 41683351 -44012403 + AluJb SINE Alu 73 301 -11 1982 187 46 35 chr15 41683351 41683785 -44011969 + L1MB7 LINE L1 5730 6168 -16 2396 64 0 10 chr15 41683885 41684196 -44011558 - AluY SINE Alu -3 308 1 2004 134 0 0 chr15 41684498 41684790 -44010964 - AluSx SINE Alu -20 292 1 1599 179 101 80 chr15 41684980 41685265 -44010489 + MER119 DNA MER1_type 99 399 -184 1288 157 88 8 chr15 41685265 41685526 -44010228 + AluJo SINE Alu 1 282 -30 1599 179 101 80 chr15 41685526 41685715 -44010039 + MER119 DNA MER1_type 399 583 0 2315 78 3 7 chr15 41685746 41686052 -44009702 - AluSp SINE Alu -8 305 1 311 102 41 0 chr15 41686615 41686664 -44009090 - L1PA7 LINE L1 -2 6152 6102 1154 148 0 30 chr15 41686805 41687007 -44008747 + AluSg/x SINE Alu 112 307 -5 1958 98 4 0 chr15 41688265 41688540 -44007214 + AluY SINE Alu 1 276 -35 219 103 0 0 chr15 41688541 41688580 -44007174 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 936 193 141 36 chr15 41689098 41689375 -44006379 - MER33 DNA MER1_type -25 299 1 28 91 0 0 chr15 41691000 41691077 -44004677 + GC_rich Low_complexity Low_complexity 1 77 0 1516 175 18 14 chr15 41691443 41691723 -44004031 - AluJo SINE Alu -17 285 5 488 103 26 0 chr15 41691825 41691903 -44003851 - Alu SINE Alu -3 307 228 1038 79 0 7 chr15 41692003 41692143 -44003611 + AluSq SINE Alu 135 273 -40 198 0 0 0 chr15 41692143 41692165 -44003589 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 2350 45 7 0 chr15 41692313 41692599 -44003155 - L1PA7 LINE L1 0 6154 5867 1876 170 0 3 chr15 41694393 41694693 -44001061 - AluJo SINE Alu -13 299 1 251 154 0 19 chr15 41695590 41695642 -44000112 + CT-rich Low_complexity Low_complexity 3 53 0 2344 92 0 0 chr15 41696361 41696656 -43999098 + AluSg SINE Alu 1 295 -15 1960 117 0 0 chr15 41696840 41697113 -43998641 - AluSx SINE Alu 0 312 40 264 32 0 0 chr15 41697113 41697144 -43998610 - U2 snRNA snRNA -157 31 1 * 386 169 0 0 chr15 41697140 41697199 -43998555 - AluSx SINE Alu -249 59 1 180 0 0 0 chr15 41698003 41698023 -43997731 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 2268 82 3 13 chr15 41698024 41698329 -43997425 + AluSx SINE Alu 1 302 -10 2251 91 7 0 chr15 41698653 41698951 -43996803 - AluSg SINE Alu -10 300 1 2323 84 0 0 chr15 41698974 41699259 -43996495 - AluSc SINE Alu -23 286 2 21 0 0 0 chr15 41699747 41699768 -43995986 + AT_rich Low_complexity Low_complexity 1 21 0 913 198 6 0 chr15 41700653 41700810 -43994944 + FAM SINE Alu 1 158 -17 475 278 77 6 chr15 41701259 41701428 -43994326 - MIR3 SINE MIR -11 197 17 2078 144 0 0 chr15 41701786 41702085 -43993669 + AluSx SINE Alu 1 299 -13 419 285 122 20 chr15 41702167 41702413 -43993341 + MLT1K LTR MaLR 103 373 -215 1893 131 116 44 chr15 41702968 41703195 -43992559 + MER1A DNA MER1_type 1 263 -2439 2227 113 7 0 chr15 41703195 41703496 -43992258 + AluSx SINE Alu 1 303 -9 1893 131 116 44 chr15 41703496 41703612 -43992142 + MER1A DNA MER1_type 263 369 -160 387 321 57 25 chr15 41704420 41704579 -43991175 - L2 LINE L2 0 3272 3109 2383 100 0 0 chr15 41704840 41705141 -43990613 + AluSq SINE Alu 1 301 -12 274 267 27 13 chr15 41705402 41705477 -43990277 + MLT1K LTR MaLR 340 415 -173 2615 44 0 0 chr15 41706491 41706788 -43988966 - AluY SINE Alu -14 297 1 216 0 0 0 chr15 41707066 41707090 -43988664 + (CAG)n Simple_repeat Simple_repeat 2 25 0 732 184 0 0 chr15 41707411 41707536 -43988218 - Charlie1 DNA MER1_type 0 2761 2637 241 287 23 0 chr15 41707622 41707709 -43988045 + MLT1K LTR MaLR 500 588 0 292 304 130 6 chr15 41707865 41708026 -43987728 - MIR SINE MIR -46 216 36 255 282 8 68 chr15 41709024 41709290 -43986464 + G-rich Low_complexity Low_complexity 1 249 0 984 119 8 0 chr15 41712047 41712181 -43983573 + AluJo SINE Alu 1 135 -177 1679 158 11 25 chr15 41712188 41712472 -43983282 + AluJo SINE Alu 10 289 -23 2306 77 3 3 chr15 41712765 41713078 -43982676 + AluY SINE Alu 1 313 0 209 331 66 26 chr15 41713364 41713515 -43982239 - MIR3 SINE MIR -6 202 46 864 214 104 5 chr15 41713964 41714156 -43981598 + MER58C DNA MER1_type 1 211 -4 279 250 18 0 chr15 41715432 41715488 -43980266 - Charlie8 DNA MER1_type -2354 63 7 234 273 82 27 chr15 41715662 41715772 -43979982 + MIR SINE MIR 66 181 -81 29 28 0 0 chr15 41716386 41716422 -43979332 + AT_rich Low_complexity Low_complexity 1 36 0 1832 184 10 0 chr15 41716567 41716905 -43978849 - AluSx SINE Alu 0 341 1 555 233 18 37 chr15 41716982 41717145 -43978609 + MER117 DNA MER1_type 30 189 -8 21 0 0 0 chr15 41718818 41718839 -43976915 + AT_rich Low_complexity Low_complexity 1 21 0 1014 130 13 7 chr15 41718962 41719116 -43976638 - AluJb SINE Alu -157 155 1 743 168 0 8 chr15 41719741 41719872 -43975882 + FLAM_C SINE Alu 1 130 -3 209 270 48 0 chr15 41719959 41720022 -43975732 - MIR SINE MIR -115 147 82 2474 36 0 78 chr15 41721206 41721537 -43974217 + AluY SINE Alu 1 305 -6 242 348 0 35 chr15 41722346 41722461 -43973293 + MIR3 SINE MIR 77 187 -21 635 236 160 27 chr15 41722840 41723065 -43972689 - MIR SINE MIR 0 262 8 1862 138 6 66 chr15 41724111 41724251 -43971503 + AluJo SINE Alu 1 148 -164 2190 95 3 11 chr15 41724251 41724575 -43971179 + AluSx SINE Alu 1 322 0 1862 138 6 66 chr15 41724575 41724752 -43971002 + AluJo SINE Alu 148 301 -11 197 261 234 9 chr15 41725177 41725288 -43970466 + L2 LINE L2 3136 3271 -1 266 309 123 37 chr15 41725822 41726368 -43969386 + L2 LINE L2 1570 2162 -1152 333 366 9 0 chr15 41726430 41726542 -43969212 + L2 LINE L2 3134 3246 -26 2362 81 3 23 chr15 41726789 41727099 -43968655 - AluSc SINE Alu -5 304 1 1917 112 11 4 chr15 41728129 41728397 -43967357 - AluSx SINE Alu -13 299 30 2440 88 0 3 chr15 41728502 41728808 -43966946 - AluSx SINE Alu -7 305 1 317 203 16 0 chr15 41729092 41729156 -43966598 + LTR33 LTR ERVL 450 514 -7 328 231 264 0 chr15 41729397 41729518 -43966236 + MER5A DNA MER1_type 37 189 0 466 180 22 0 chr15 41729789 41729878 -43965876 + MER5B DNA MER1_type 78 168 -10 2013 96 75 4 chr15 41730408 41730688 -43965066 - AluSx SINE Alu -12 300 1 1652 181 13 19 chr15 41730985 41731294 -43964460 + AluJo SINE Alu 4 310 -2 221 222 121 40 chr15 41731594 41731693 -43964061 + MIR SINE MIR 104 210 -52 457 219 10 0 chr15 41731930 41732026 -43963728 + MER5B DNA MER1_type 82 178 0 2036 97 0 74 chr15 41732574 41732885 -43962869 + AluSx SINE Alu 11 298 -14 560 215 0 0 chr15 41733060 41733167 -43962587 + MER63 DNA MER1_type 681 787 -273 871 132 0 22 chr15 41733499 41733635 -43962119 + FLAM_C SINE Alu 1 133 0 737 302 155 36 chr15 41733656 41733802 -43961952 - L3 LINE CR1 -157 1420 1293 1823 177 3 3 chr15 41733802 41734102 -43961652 + AluJo SINE Alu 1 300 -12 737 302 155 36 chr15 41734102 41734485 -43961269 - L3 LINE CR1 -284 1293 828 2237 88 0 7 chr15 41734502 41734825 -43960929 - AluSc SINE Alu 0 309 5 452 127 13 0 chr15 41734829 41734908 -43960846 + L1MB8 LINE L1 6099 6178 0 2095 94 65 0 chr15 41735035 41735311 -43960443 + AluSg SINE Alu 2 295 -15 210 143 0 0 chr15 41736924 41736959 -43958795 + (ATGGTG)n Simple_repeat Simple_repeat 4 38 0 904 203 14 14 chr15 41736967 41737174 -43958580 - MIR SINE MIR -19 243 37 2105 113 138 43 chr15 41737691 41737861 -43957893 - MSTA LTR MaLR 0 428 275 2262 109 0 0 chr15 41737861 41738165 -43957589 - AluY SINE Alu -7 304 1 2105 113 138 43 chr15 41738165 41738385 -43957369 - MSTA LTR MaLR -153 275 1 215 190 76 38 chr15 41739017 41739096 -43956658 - MIR SINE MIR -91 171 90 378 173 0 0 chr15 41739328 41739403 -43956351 + (CA)n Simple_repeat Simple_repeat 2 76 0 1898 257 91 44 chr15 41739593 41739980 -43955774 - MER115 DNA AcHobo -17 676 309 2106 117 45 0 chr15 41739980 41740270 -43955484 + AluSx SINE Alu 1 303 -9 2177 129 3 3 chr15 41740270 41740580 -43955174 + AluSx SINE Alu 1 310 -2 1898 257 91 44 chr15 41740580 41740830 -43954924 - MER115 DNA AcHobo -383 310 8 2147 85 58 10 chr15 41741656 41741950 -43953804 - AluSx SINE Alu -4 308 1 2272 100 7 3 chr15 41742564 41742863 -43952891 + AluSx SINE Alu 1 300 -12 202 284 45 0 chr15 41743200 41743267 -43952487 + L3 LINE CR1 1490 1559 -18 198 272 97 88 chr15 41743513 41743627 -43952127 - L2 LINE L2 0 3272 3158 1074 135 70 11 chr15 41744220 41744405 -43951349 + AluJb SINE Alu 11 206 -106 2363 87 3 0 chr15 41744605 41744893 -43950861 + AluSg SINE Alu 10 298 -12 462 289 108 5 chr15 41746193 41746387 -43949367 + MIR SINE MIR 49 262 0 261 0 0 0 chr15 41747020 41747049 -43948705 + (T)n Simple_repeat Simple_repeat 1 29 0 1778 124 11 4 chr15 41747074 41747341 -43948413 + AluSc SINE Alu 41 309 0 329 189 40 0 chr15 41747396 41747470 -43948284 - MER112 DNA MER1_type -6 254 178 426 184 48 48 chr15 41747562 41747687 -43948067 - MER112 DNA MER1_type -135 125 1 191 231 0 0 chr15 41748752 41748791 -43946963 - L2 LINE L2 -10 3303 3265 726 309 101 0 chr15 41750039 41750327 -43945427 + LTR33A LTR ERVL 69 385 -138 425 234 102 0 chr15 41750327 41750464 -43945290 + LTR33A LTR ERVL 329 479 -44 1825 313 159 34 chr15 41750464 41750532 -43945222 + MER7C DNA MER2_type 1 59 -2969 204 40 0 0 chr15 41750532 41750557 -43945197 + (ATG)n Simple_repeat Simple_repeat 2 26 0 2242 107 0 10 chr15 41750557 41750856 -43944898 - AluSx SINE Alu -16 296 1 1825 313 159 34 chr15 41750856 41751320 -43944434 + MER7C DNA MER2_type 58 601 -1 236 128 64 21 chr15 41751395 41751442 -43944312 + LTR50 LTR ERVL 747 795 0 214 237 118 13 chr15 41751572 41751648 -43944106 + MIR SINE MIR 34 117 -145 24 0 0 0 chr15 41751793 41751817 -43943937 + AT_rich Low_complexity Low_complexity 1 24 0 409 318 54 7 chr15 41752549 41752697 -43943057 + MIR3 SINE MIR 20 174 -34 219 125 0 0 chr15 41752697 41752729 -43943025 + L2 LINE L2 3265 3296 -17 250 246 15 15 chr15 41753363 41753428 -43942326 + L2 LINE L2 3234 3298 -15 2039 148 3 0 chr15 41753474 41753785 -43941969 - AluJb SINE Alu 0 312 1 4122 84 0 4 chr15 41754341 41754897 -43940857 - MER41A LTR ERV1 0 554 1 1676 169 16 44 chr15 41755515 41755961 -43939793 - AluJo SINE Alu 0 437 1 2654 108 9 41 chr15 41756340 41756783 -43938971 + MER1A DNA MER1_type 101 529 0 2106 91 0 18 chr15 41756873 41757169 -43938585 - AluSc SINE Alu 0 301 11 21 0 0 0 chr15 41757451 41757472 -43938282 + AT_rich Low_complexity Low_complexity 1 21 0 2206 106 0 0 chr15 41757787 41758089 -43937665 - AluSq SINE Alu -11 302 1 1288 135 57 0 chr15 41758196 41758352 -43937402 - AluJo SINE Alu -25 287 117 207 0 0 0 chr15 41758352 41758375 -43937379 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1288 135 57 0 chr15 41758375 41758410 -43937344 - AluJo SINE Alu -195 117 85 31 44 0 0 chr15 41760391 41760436 -43935318 + AT_rich Low_complexity Low_complexity 1 45 0 1622 170 13 29 chr15 41760540 41760851 -43934903 - AluJo SINE Alu -6 306 1 230 122 20 20 chr15 41762865 41762914 -43932840 + (TA)n Simple_repeat Simple_repeat 2 50 0 238 279 139 6 chr15 41762979 41763137 -43932617 - L1ME LINE L1 -260 5904 5726 455 298 18 0 chr15 41763267 41763381 -43932373 + MIR3 SINE MIR 86 201 -7 6619 118 26 4 chr15 41763842 41765375 -43930379 - L1MA3 LINE L1 -10 6295 4732 23 0 0 0 chr15 41765441 41765464 -43930290 + AT_rich Low_complexity Low_complexity 1 23 0 386 239 174 55 chr15 41766004 41766427 -43929327 + MLT1K LTR MaLR 129 583 -5 2130 98 30 14 chr15 41766630 41766927 -43928827 - AluSx SINE Alu -10 302 1 193 323 105 53 chr15 41767615 41767748 -43928006 - MIR3 SINE MIR -46 162 23 1872 139 7 24 chr15 41768280 41768575 -43927179 + AluSx SINE Alu 1 290 -22 1112 150 26 22 chr15 41768666 41768893 -43926861 - L1MB2 LINE L1 0 6171 5944 185 352 0 0 chr15 41768926 41768980 -43926774 - L2 LINE L2 -12 3301 3248 480 214 0 87 chr15 41769671 41769797 -43925957 + MER5B DNA MER1_type 16 130 -48 1301 216 58 17 chr15 41769817 41770214 -43925540 - MSTD LTR MaLR -2 394 1 234 356 40 0 chr15 41771087 41771188 -43924566 - MIR3 SINE MIR -19 189 85 471 281 81 16 chr15 41771214 41771399 -43924355 + MIR3 SINE MIR 3 199 -9 259 256 93 0 chr15 41771508 41771594 -43924160 - MER21B LTR ERV1 -52 811 718 3429 194 9 43 chr15 41771632 41771749 -43924005 - MER21B LTR ERV1 -132 731 612 2125 114 5 30 chr15 41771749 41771950 -43923804 - MER46B DNA MER2_type -2495 236 172 2267 89 3 3 chr15 41771950 41772243 -43923511 - AluSp SINE Alu -20 293 1 2125 114 5 30 chr15 41772243 41772408 -43923346 - MER46B DNA MER2_type -2559 172 4 3429 194 9 43 chr15 41772408 41773042 -43922712 - MER21B LTR ERV1 -251 612 5 1632 171 43 9 chr15 41773070 41773392 -43922362 - MLT1A1 LTR MaLR -17 348 16 202 336 156 8 chr15 41773809 41773937 -43921817 - MIR3 SINE MIR -21 187 41 2246 115 0 0 chr15 41774302 41774607 -43921147 + AluSg SINE Alu 1 305 -5 2672 24 0 0 chr15 41775925 41776222 -43919532 + AluYb8 SINE Alu 1 297 -21 186 357 31 41 chr15 41777207 41777305 -43918449 + L3b LINE CR1 1242 1338 -245 364 191 138 11 chr15 41777733 41777827 -43917927 + L2 LINE L2 3208 3313 0 541 336 60 20 chr15 41778320 41778570 -43917184 - MIR SINE MIR 0 262 3 354 134 0 0 chr15 41778741 41778808 -43916946 - L1MB4 LINE L1 -1 6179 6113 2403 88 3 0 chr15 41778819 41779116 -43916638 - AluSp SINE Alu -13 300 3 21 0 0 0 chr15 41779123 41779144 -43916610 + AT_rich Low_complexity Low_complexity 1 21 0 341 255 205 19 chr15 41779259 41779420 -43916334 - L1ME4a LINE L1 -3 6118 5928 210 377 67 46 chr15 41779447 41779606 -43916148 - L2 LINE L2 -492 2822 2668 827 174 0 0 chr15 41779606 41779738 -43916016 + FLAM_C SINE Alu 2 133 0 210 377 67 46 chr15 41779738 41779907 -43915847 - L2 LINE L2 -646 2668 2487 584 281 117 39 chr15 41780301 41780582 -43915172 + L2 LINE L2 3010 3312 -1 234 296 130 17 chr15 41780549 41780664 -43915090 - L2 LINE L2 -982 2332 2205 * 2392 75 0 0 chr15 41780701 41780993 -43914761 + AluY SINE Alu 1 292 -19 325 287 124 8 chr15 41781851 41782023 -43913731 - MIR SINE MIR -11 197 6 24 32 0 0 chr15 41782726 41782757 -43912997 + AT_rich Low_complexity Low_complexity 1 31 0 2035 140 3 25 chr15 41783323 41783637 -43912117 - AluSx SINE Alu -5 307 1 1829 113 0 4 chr15 41783933 41784180 -43911574 - AluSq SINE Alu -67 246 1 2076 127 49 22 chr15 41784263 41784812 -43910942 - MER51A LTR ERV1 -2 632 1 2038 104 45 0 chr15 41784894 41785183 -43910571 - AluY SINE Alu -9 302 1 2383 86 0 0 chr15 41785618 41785910 -43909844 - AluSc SINE Alu -17 292 1 872 74 33 0 chr15 41786349 41786471 -43909283 + L1PA7 LINE L1 6029 6154 0 2106 144 64 1 chr15 41786861 41787342 -43908412 + L1PB4 LINE L1 5304 5858 -298 197 309 82 10 chr15 41787918 41788015 -43907739 - L2 LINE L2 0 3272 3169 753 172 0 0 chr15 41788262 41788378 -43907376 + FLAM_A SINE Alu 1 116 -17 288 77 0 0 chr15 41788390 41788429 -43907325 + (TA)n Simple_repeat Simple_repeat 1 39 0 1659 191 0 31 chr15 41793686 41794006 -43901748 + AluSx SINE Alu 1 310 -2 2275 117 3 0 chr15 41794260 41794569 -43901185 - AluSx SINE Alu -2 310 1 1911 130 18 14 chr15 41794577 41794862 -43900892 - AluJb SINE Alu -24 288 3 358 324 110 53 chr15 41794919 41795632 -43900122 + L2 LINE L2 1273 2044 -1270 2105 140 100 42 chr15 41795731 41796189 -43899565 + MLT1D LTR MaLR 21 505 0 318 344 103 36 chr15 41796191 41796905 -43898849 + L2 LINE L2 2232 3043 -229 2309 87 10 0 chr15 41796905 41797203 -43898551 + AluSq SINE Alu 1 301 -12 318 344 103 36 chr15 41797203 41797431 -43898323 + L2 LINE L2 3043 3254 -18 1870 136 3 7 chr15 41797439 41797725 -43898029 + AluJb SINE Alu 2 286 -26 1635 135 8 16 chr15 41797845 41797995 -43897759 - AluJb SINE Alu -27 285 136 2126 100 6 60 chr15 41797995 41798180 -43897574 - AluSx SINE Alu -10 302 140 2029 122 7 3 chr15 41798180 41798484 -43897270 - AluSx SINE Alu -7 305 1 2126 100 6 60 chr15 41798484 41798617 -43897137 - AluSx SINE Alu -172 140 1 1635 135 8 16 chr15 41798617 41798710 -43897044 - AluJb SINE Alu -176 136 44 2195 124 68 25 chr15 41798761 41799084 -43896670 + MER1B DNA MER1_type 1 337 0 193 0 29 59 chr15 41799292 41799326 -43896428 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 229 270 172 55 chr15 41799542 41799705 -43896049 + MIR3 SINE MIR 16 197 -11 2186 119 0 0 chr15 41799969 41800255 -43895499 - AluSx SINE Alu -26 286 1 2230 104 0 10 chr15 41800705 41801028 -43894726 - AluSx SINE Alu 0 320 1 313 294 43 11 chr15 41801617 41801709 -43894045 - L2 LINE L2 -52 3261 3167 258 110 0 68 chr15 41802404 41802477 -43893277 + (CCCCCG)n Simple_repeat Simple_repeat 4 71 0 500 188 48 118 chr15 41803100 41803286 -43892468 + MER5B DNA MER1_type 2 174 -4 664 244 60 15 chr15 41804503 41804704 -43891050 - L2 LINE L2 -1 3312 3103 2354 95 0 3 chr15 41804773 41805077 -43890677 - AluSq SINE Alu -10 303 1 260 269 30 0 chr15 41805722 41805789 -43889965 - L3 LINE CR1 -82 1495 1427 1627 195 44 0 chr15 41805847 41806144 -43889610 + AluJb SINE Alu 2 311 -1 269 264 136 84 chr15 41806213 41806486 -43889268 - L3 LINE CR1 -354 1223 937 210 37 0 0 chr15 41806514 41806541 -43889213 + (A)n Simple_repeat Simple_repeat 1 27 0 34 0 0 0 chr15 41806740 41806774 -43888980 + AT_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr15 41808135 41808171 -43887583 + AT_rich Low_complexity Low_complexity 1 36 0 1695 158 7 11 chr15 41808228 41808507 -43887247 - AluJo SINE Alu -32 280 3 2474 226 39 7 chr15 41808514 41809125 -43886629 - L1M4 LINE L1 -823 5323 4693 1424 152 54 54 chr15 41809125 41809198 -43886556 - Tigger3(Golem) DNA MER2_type -955 276 204 1941 153 7 0 chr15 41809198 41809493 -43886261 - AluJb SINE Alu -15 297 1 1424 152 54 54 chr15 41809493 41809695 -43886059 - Tigger3(Golem) DNA MER2_type -1026 205 1 336 156 111 0 chr15 41809697 41809832 -43885922 - L1PA15 LINE L1 -1 6164 5941 25 51 0 0 chr15 41810393 41810432 -43885322 + AT_rich Low_complexity Low_complexity 1 39 0 712 142 117 17 chr15 41810615 41810735 -43885019 - FLAM_C SINE Alu 0 133 2 23 68 0 0 chr15 41814242 41814286 -43881468 + AT_rich Low_complexity Low_complexity 1 44 0 1911 161 42 39 chr15 41814462 41814698 -43881056 + MER46B DNA MER2_type 1 115 -2616 1927 166 3 3 chr15 41814698 41815000 -43880754 + AluJb SINE Alu 1 302 -10 1911 161 42 39 chr15 41815000 41815123 -43880631 + MER46B DNA MER2_type 115 236 0 368 383 13 7 chr15 41815677 41815831 -43879923 + L2 LINE L2 3117 3271 -1 196 272 8 96 chr15 41815828 41815953 -43879801 - L2 LINE L2 -214 3058 2945 * 234 181 57 114 chr15 41816028 41816133 -43879621 + MIR SINE MIR 118 216 -46 425 348 45 11 chr15 41816449 41816627 -43879127 + L3 LINE CR1 1052 1235 -342 244 303 145 7 chr15 41816685 41816830 -43878924 + MLT1H LTR MaLR 97 261 -288 1718 171 3 23 chr15 41817358 41817668 -43878086 - AluJo SINE Alu -8 304 1 191 59 0 29 chr15 41818121 41818155 -43877599 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2016 105 0 11 chr15 41818159 41818444 -43877310 - AluY SINE Alu -29 282 1 1932 127 0 0 chr15 41818464 41818739 -43877015 - AluSg SINE Alu -1 309 35 1606 174 8 8 chr15 41818746 41819011 -43876743 - AluJb SINE Alu -16 296 32 413 252 31 16 chr15 41819916 41820043 -43875711 + L2 LINE L2 2386 2514 -800 180 0 0 0 chr15 41820377 41820397 -43875357 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 270 263 63 120 chr15 41820435 41820529 -43875225 + L3 LINE CR1 1251 1332 -245 1187 193 24 0 chr15 41820529 41820742 -43875012 - MER20 DNA MER1_type 0 219 2 270 263 63 120 chr15 41820742 41820822 -43874932 + L3 LINE CR1 1332 1415 -162 1985 87 56 11 chr15 41821632 41821919 -43873835 - AluSc SINE Alu -9 300 1 1767 170 0 20 chr15 41822220 41822526 -43873228 + AluJb SINE Alu 1 300 -12 200 338 14 0 chr15 41823008 41823082 -43872672 + L2 LINE L2 3227 3301 -12 1905 161 6 3 chr15 41823176 41823487 -43872267 - AluJb SINE Alu 0 312 1 544 209 157 15 chr15 41823682 41823816 -43871938 - MIR SINE MIR -79 183 31 2380 59 0 7 chr15 41824365 41824681 -43871073 - AluY SINE Alu 0 311 1 460 256 236 16 chr15 41825748 41825998 -43869756 - L1ME3A LINE L1 -219 5951 5647 804 205 18 0 chr15 41825999 41826165 -43869589 - MER5A DNA MER1_type -3 186 18 1884 99 33 93 chr15 41826556 41826888 -43868866 - AluSx SINE Alu 0 312 1 207 205 0 0 chr15 41827918 41827957 -43867797 + MIR SINE MIR 217 255 -7 2039 259 81 25 chr15 41828084 41828488 -43867266 - L1ME3A LINE L1 -4 6166 5786 1696 174 14 3 chr15 41828488 41828770 -43866984 - AluJb SINE Alu -27 285 1 2039 259 81 25 chr15 41828770 41828833 -43866921 - L1ME3A LINE L1 -384 5786 5728 437 0 19 0 chr15 41828833 41828886 -43866868 + (CA)n Simple_repeat Simple_repeat 2 55 0 2039 259 81 25 chr15 41828886 41829150 -43866604 - L1ME3A LINE L1 -442 5728 5393 479 266 71 0 chr15 41829152 41829336 -43866418 + L1ME3A LINE L1 5903 6099 -71 654 225 139 37 chr15 41829339 41829663 -43866091 - L1ME3A LINE L1 -747 5399 5043 218 306 112 35 chr15 41829929 41830099 -43865655 + L2 LINE L2 3042 3224 -89 556 179 160 19 chr15 41830929 41831085 -43864669 - MER5B DNA MER1_type 0 178 1 662 261 220 42 chr15 41835354 41835905 -43859849 - L2 LINE L2 -1096 2218 1570 2270 109 6 6 chr15 41835909 41836221 -43859533 - AluSx SINE Alu 0 312 1 1013 253 102 5 chr15 41836224 41836627 -43859127 + L1ME4a LINE L1 2995 3436 -2710 2037 106 0 4 chr15 41836627 41836900 -43858854 + AluSq SINE Alu 41 312 -1 2212 232 43 29 chr15 41836912 41837495 -43858259 - L1MCb LINE L1 -5043 1002 412 1277 239 14 0 chr15 41837499 41837779 -43857975 - L1MCb LINE L1 -5761 284 1 351 330 86 46 chr15 41838164 41838512 -43857242 + L1ME4a LINE L1 4803 5164 -982 332 314 103 36 chr15 41838514 41838708 -43857046 + L1ME4a LINE L1 5193 5399 -747 349 255 103 53 chr15 41838746 41838945 -43856809 + L1ME4a LINE L1 5453 5660 -461 3779 179 42 44 chr15 41838996 41839763 -43855991 - MER21B LTR ERV1 -98 765 1 250 327 149 0 chr15 41839933 41840040 -43855714 - L2 LINE L2 0 3313 3191 261 235 59 123 chr15 41840069 41840273 -43855481 + L1ME4a LINE L1 5929 6119 -2 1658 196 46 68 chr15 41840379 41840582 -43855172 - MER4A LTR ERV1 0 695 489 2338 81 13 7 chr15 41840582 41840891 -43854863 + AluY SINE Alu 1 311 0 1658 196 46 68 chr15 41840891 41841403 -43854351 - MER4A LTR ERV1 -206 489 1 331 217 58 0 chr15 41841528 41841597 -43854157 + L2 LINE L2 2995 3067 -205 1726 195 35 57 chr15 41841640 41841861 -43853893 - L1ME2 LINE L1 -3 6161 5952 2246 116 13 0 chr15 41841861 41842164 -43853590 - AluSx SINE Alu -5 307 1 1726 195 35 57 chr15 41842164 41842367 -43853387 - L1ME2 LINE L1 -212 5952 5746 1238 144 31 35 chr15 41842423 41842652 -43853102 - MER21A LTR ERV1 0 931 704 2143 114 16 0 chr15 41842656 41842962 -43852792 - AluSx SINE Alu -1 311 1 495 198 89 32 chr15 41843826 41843840 -43851914 - L1MA10 LINE L1 0 6334 6321 424 245 100 85 chr15 41843840 41844106 -43851648 - L1ME1 LINE L1 -5 6161 5914 6291 103 109 43 chr15 41844107 41845257 -43850497 + Tigger3b DNA MER2_type 1 1226 -5 240 35 0 0 chr15 41845275 41845304 -43850450 + (TA)n Simple_repeat Simple_repeat 2 30 0 234 81 0 0 chr15 41845330 41845367 -43850387 + (TG)n Simple_repeat Simple_repeat 2 38 0 1218 199 78 31 chr15 41847100 41847457 -43848297 + Charlie5 DNA MER1_type 2240 2613 0 215 321 45 36 chr15 41848156 41848268 -43847486 + L2 LINE L2 2946 3058 -214 210 105 0 0 chr15 41849530 41849568 -43846186 + (CA)n Simple_repeat Simple_repeat 1 38 0 895 83 0 0 chr15 41849668 41849777 -43845977 - AluSg/x SINE Alu -11 298 190 571 241 37 73 chr15 41852354 41852545 -43843209 - MER5A DNA MER1_type -5 184 1 2347 102 0 0 chr15 41853243 41853538 -43842216 - AluSg1 SINE Alu -14 295 1 2231 117 0 0 chr15 41853593 41853905 -43841849 - AluSx SINE Alu 0 312 1 236 260 208 0 chr15 41857736 41857832 -43837922 - L2 LINE L2 -3 3269 3154 181 304 125 9 chr15 41857948 41858060 -43837694 - L2 LINE L2 -193 3079 2955 2247 113 10 3 chr15 41859148 41859458 -43836296 - AluSx SINE Alu 0 312 1 894 192 47 23 chr15 41859955 41860169 -43835585 + MER20 DNA MER1_type 1 219 0 1060 168 0 17 chr15 41860353 41860532 -43835222 - FRAM SINE Alu 0 176 1 1276 61 0 0 chr15 41861448 41861596 -43834158 - AluSg/x SINE Alu -5 307 160 356 324 9 0 chr15 41861600 41861705 -43834049 - MIR SINE MIR -65 143 38 2215 90 43 7 chr15 41862347 41862646 -43833108 - AluSg SINE Alu 0 310 1 986 91 0 0 chr15 41862646 41862767 -43832987 - AluSq/x SINE Alu -177 135 15 267 306 112 8 chr15 41864625 41864759 -43830995 + MIR3 SINE MIR 24 171 -37 187 318 61 0 chr15 41864777 41864843 -43830911 + L2 LINE L2 3148 3217 -55 2227 110 3 29 chr15 41866164 41866510 -43829244 + MER1B DNA MER1_type 1 337 0 3191 111 16 23 chr15 41867166 41867679 -43828075 - MER4B LTR ERV1 -101 509 1 21 36 0 0 chr15 41867861 41867889 -43827865 + AT_rich Low_complexity Low_complexity 1 28 0 2404 81 10 0 chr15 41868184 41868481 -43827273 - AluSp SINE Alu -9 304 5 2190 128 142 92 chr15 41868711 41869343 -43826411 + MER4A LTR ERV1 1 664 0 213 306 144 38 chr15 41870046 41870206 -43825548 + L3 LINE CR1 981 1157 -420 326 333 70 16 chr15 41870965 41871094 -43824660 - MIR SINE MIR -103 159 24 328 294 66 22 chr15 41871918 41872054 -43823700 - L2 LINE L2 -1 3312 3171 520 68 27 0 chr15 41872117 41872190 -43823564 + MADE1 DNA Mariner 6 80 0 210 280 224 9 chr15 41874659 41874766 -43820988 + L2 LINE L2 3138 3267 -5 811 226 100 34 chr15 41875658 41876007 -43819747 - L1MC5 LINE L1 -50 7911 7540 2290 119 0 3 chr15 41876949 41877261 -43818493 - AluSx SINE Alu -1 311 1 731 302 80 42 chr15 41877902 41878303 -43817451 - L2 LINE L2 0 3313 2898 264 326 134 17 chr15 41878429 41878601 -43817153 - L3 LINE CR1 -189 1388 1197 854 143 0 0 chr15 41878625 41878751 -43817003 - FLAM_C SINE Alu -7 126 1 546 108 0 0 chr15 41879394 41879477 -43816277 + FLAM SINE Alu 49 131 -12 801 210 16 0 chr15 41880278 41880464 -43815290 + MER5A DNA MER1_type 1 189 0 578 140 10 0 chr15 41880625 41880725 -43815029 + L1M4 LINE L1 5720 5820 -354 982 166 0 16 chr15 41880907 41881094 -43814660 - MER5A DNA MER1_type -1 188 5 395 264 84 13 chr15 41881112 41881267 -43814487 - MER5B DNA MER1_type -6 172 7 23 0 0 0 chr15 41881372 41881395 -43814359 + AT_rich Low_complexity Low_complexity 1 23 0 1780 187 54 45 chr15 41881396 41881864 -43813890 - L1MB5 LINE L1 -9 6165 5685 231 146 0 0 chr15 41883226 41883267 -43812487 + (CA)n Simple_repeat Simple_repeat 2 42 0 316 283 134 5 chr15 41883270 41883457 -43812297 + L1MD3 LINE L1 7572 7782 -213 1778 248 41 20 chr15 41883743 41884251 -43811503 - LTR40a LTR ERVL 0 519 1 1025 177 31 0 chr15 41885100 41885292 -43810462 + MER20 DNA MER1_type 1 198 -21 243 200 0 0 chr15 41885677 41885722 -43810032 - MIR SINE MIR -6 256 212 1123 202 28 0 chr15 41885725 41885938 -43809816 - MER58A DNA MER1_type 0 224 6 497 337 29 0 chr15 41885940 41886112 -43809642 - MIR SINE MIR -43 219 43 204 328 115 23 chr15 41886415 41886589 -43809165 - L3b LINE CR1 -182 1401 1212 483 232 96 45 chr15 41886599 41886776 -43808978 + MIR SINE MIR 8 193 -69 199 231 19 0 chr15 41887104 41887156 -43808598 - L2 LINE L2 -2 3270 3218 2284 68 39 0 chr15 41887620 41887901 -43807853 + AluSp SINE Alu 1 292 -21 661 139 44 73 chr15 41887924 41888061 -43807693 + FLAM_C SINE Alu 1 133 0 862 188 12 6 chr15 41888664 41888824 -43806930 - AluJb SINE Alu -14 298 138 2165 119 7 7 chr15 41889570 41889873 -43805881 + AluSx SINE Alu 1 303 -9 497 278 108 71 chr15 41890011 41890335 -43805419 + L2 LINE L2 2934 3269 -3 2274 129 0 0 chr15 41890626 41890935 -43804819 - AluSx SINE Alu -3 309 1 349 235 0 12 chr15 41891881 41891962 -43803792 - HsTC2 DNA Tc2 -1815 83 4 180 282 0 0 chr15 41893048 41893087 -43802667 - MIR SINE MIR -64 198 160 541 273 32 64 chr15 41893108 41893194 -43802560 - MIR SINE MIR -24 238 151 969 124 68 23 chr15 41893194 41893371 -43802383 - MER5A DNA MER1_type -4 185 1 541 273 32 64 chr15 41893371 41893504 -43802250 - MIR SINE MIR -111 151 26 1843 137 65 3 chr15 41893894 41894186 -43801568 + AluJb SINE Alu 2 311 -1 2543 90 0 0 chr15 41894205 41894517 -43801237 + AluSx SINE Alu 1 312 0 187 102 20 20 chr15 41895554 41895603 -43800151 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 398 249 158 11 chr15 41895665 41895842 -43799912 - L1ME3A LINE L1 0 6170 5968 2145 110 24 0 chr15 41896795 41897086 -43798668 + AluSx SINE Alu 1 298 -14 428 284 97 23 chr15 41897283 41897459 -43798295 - MER5A DNA MER1_type 0 189 1 219 280 160 30 chr15 41897460 41897560 -43798194 - MIR3 SINE MIR -49 159 47 289 302 164 13 chr15 41897894 41898126 -43797628 + L2 LINE L2 2825 3091 -181 2358 104 7 0 chr15 41899508 41899816 -43795938 - AluSq SINE Alu -3 310 1 298 292 14 0 chr15 41899988 41900060 -43795694 + MIR3 SINE MIR 85 157 -51 831 223 26 22 chr15 41900063 41900332 -43795422 + HAL1 LINE L1 2234 2503 -4 2123 144 20 0 chr15 41900979 41901285 -43794469 + AluJb SINE Alu 1 312 0 551 101 0 11 chr15 41901288 41901377 -43794377 + (GAAA)n Simple_repeat Simple_repeat 2 89 0 383 247 113 33 chr15 41902048 41902198 -43793556 - MLT1D LTR MaLR -337 168 7 413 297 118 20 chr15 41902531 41902726 -43793028 + L1MC/D LINE L1 5556 5772 -392 297 224 90 0 chr15 41902741 41902808 -43792946 - LTR16C LTR ERVL -7 484 412 938 279 101 20 chr15 41902868 41903273 -43792481 + LTR16A LTR ERVL 1 438 -12 1251 184 56 39 chr15 41903445 41903679 -43792075 - AluJo SINE Alu -69 243 6 26 30 0 0 chr15 41903683 41903716 -43792038 + AT_rich Low_complexity Low_complexity 1 33 0 1647 161 104 7 chr15 41903964 41904244 -43791510 + AluJo SINE Alu 1 307 -5 363 185 19 9 chr15 41905067 41905175 -43790579 + CT-rich Low_complexity Low_complexity 2 110 0 489 227 57 63 chr15 41905419 41905623 -43790131 + MIR SINE MIR 2 213 -49 379 180 6 13 chr15 41906575 41906649 -43789105 - MIR3 SINE MIR -30 178 103 237 304 0 14 chr15 41907286 41907355 -43788399 - L2 LINE L2 0 3313 3246 225 227 45 30 chr15 41907674 41907740 -43788014 + L2 LINE L2 2872 2938 -375 1389 180 4 8 chr15 41907744 41907989 -43787765 - AluJo SINE Alu -64 248 5 2608 135 52 2 chr15 41908040 41908448 -43787306 - MSTC LTR MaLR 0 428 1 23 0 0 0 chr15 41908537 41908560 -43787194 + AT_rich Low_complexity Low_complexity 1 23 0 858 145 0 0 chr15 41908562 41908686 -43787068 - FLAM_C SINE Alu -7 126 3 197 273 236 0 chr15 41908686 41908741 -43787013 + L2 LINE L2 3184 3251 -21 612 243 64 50 chr15 41909012 41909260 -43786494 + MIR SINE MIR 5 262 0 358 338 23 35 chr15 41909267 41909441 -43786313 - MIR SINE MIR -85 123 4 21 0 0 0 chr15 41909472 41909493 -43786261 + AT_rich Low_complexity Low_complexity 1 21 0 265 262 198 32 chr15 41910461 41910587 -43785167 - MIR SINE MIR -107 155 9 230 138 0 103 chr15 41910927 41910973 -43784781 - L1M3 LINE L1 -732 5439 5399 1621 111 5 0 chr15 41910973 41911181 -43784573 - AluJb SINE Alu -17 295 87 230 138 0 103 chr15 41911181 41911192 -43784562 - L1M3 LINE L1 -772 5399 5388 488 239 116 136 chr15 41911377 41911833 -43783921 + L2 LINE L2 2824 3270 -2 229 282 90 0 chr15 41911918 41911996 -43783758 - MIR SINE MIR -3 259 175 222 216 20 0 chr15 41912178 41912229 -43783525 + L2 LINE L2 3262 3313 0 2362 102 0 0 chr15 41912396 41912699 -43783055 - AluSg SINE Alu -7 303 1 459 192 144 16 chr15 41912719 41912844 -43782910 - MLT1J1 LTR MaLR -305 141 1 311 209 58 58 chr15 41912920 41913006 -43782748 - MIR3 SINE MIR -28 180 95 816 184 101 32 chr15 41913029 41913246 -43782508 + AluJo SINE Alu 3 234 -78 1889 170 20 0 chr15 41913793 41914099 -43781655 + AluJb SINE Alu 1 312 0 551 101 0 11 chr15 41914102 41914191 -43781563 + (GAAA)n Simple_repeat Simple_repeat 2 89 0 2480 91 3 0 chr15 41914627 41914936 -43780818 + AluSp SINE Alu 1 310 -3 289 302 164 13 chr15 41916318 41916550 -43779204 - L2 LINE L2 -181 3091 2825 230 270 160 30 chr15 41916886 41916986 -43778768 + MIR3 SINE MIR 47 159 -49 428 275 90 28 chr15 41916987 41917165 -43778589 + MER5A DNA MER1_type 1 189 0 2138 110 24 0 chr15 41917362 41917653 -43778101 - AluSx SINE Alu -14 298 1 261 282 111 0 chr15 41918656 41918773 -43776981 + L1ME3A LINE L1 6032 6161 -9 551 101 0 11 chr15 41919512 41919601 -43776153 + (TTTC)n Simple_repeat Simple_repeat 2 89 0 2123 144 20 0 chr15 41919604 41919910 -43775844 - AluJb SINE Alu 0 312 1 831 223 26 22 chr15 41920557 41920826 -43774928 - HAL1 LINE L1 -4 2503 2234 298 292 14 0 chr15 41920829 41920901 -43774853 - MIR3 SINE MIR -51 157 85 2324 96 0 0 chr15 41921073 41921365 -43774389 + AluSx SINE Alu 1 292 -20 219 69 0 0 chr15 41922329 41922358 -43773396 + (TG)n Simple_repeat Simple_repeat 1 29 0 271 155 10 58 chr15 41923225 41923328 -43772426 + GA-rich Low_complexity Low_complexity 2 99 0 383 119 15 0 chr15 41923979 41924046 -43771708 + (TG)n Simple_repeat Simple_repeat 1 68 0 770 111 17 0 chr15 41925129 41925246 -43770508 - LTR8 LTR ERV1 0 691 573 2150 132 10 0 chr15 41925247 41925551 -43770203 - AluSx SINE Alu -5 307 1 885 106 0 0 chr15 41925551 41925664 -43770090 - AluSq/x SINE Alu -177 135 23 2096 192 20 88 chr15 41925664 41925697 -43770057 - LTR8 LTR ERV1 -128 563 529 2020 94 49 4 chr15 41925697 41925986 -43769768 - AluSg SINE Alu 0 301 1 2096 192 20 88 chr15 41925986 41926554 -43769200 - LTR8 LTR ERV1 -162 529 1 205 276 13 66 chr15 41926934 41926973 -43768781 - L2 LINE L2 -19 3253 3218 3083 131 198 7 chr15 41926973 41927563 -43768191 + MER39 LTR ERV1 5 707 0 205 276 13 66 chr15 41927563 41927599 -43768155 - L2 LINE L2 -54 3218 3182 191 384 18 18 chr15 41928348 41928460 -43767294 - MIR SINE MIR -73 135 24 278 266 145 44 chr15 41929080 41929264 -43766490 + MIR3 SINE MIR 3 196 -58 189 0 0 0 chr15 41929281 41929302 -43766452 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 235 200 33 33 chr15 41929302 41929362 -43766392 - L2 LINE L2 -32 3281 3222 404 213 189 8 chr15 41929743 41929870 -43765884 - MIR SINE MIR -11 251 102 2216 120 13 0 chr15 41930011 41930319 -43765435 - AluSx SINE Alu 0 312 1 207 113 57 19 chr15 41930618 41930671 -43765083 + GA-rich Low_complexity Low_complexity 2 56 0 289 296 101 35 chr15 41930905 41931074 -43764680 + MIR SINE MIR 33 212 -50 196 309 62 0 chr15 41931238 41931319 -43764435 + MIR SINE MIR 70 155 -107 364 259 47 133 chr15 41931766 41931909 -43763845 + MIR SINE MIR 9 122 -140 2359 121 0 0 chr15 41931909 41932222 -43763532 + AluSq SINE Alu 1 313 0 364 259 47 133 chr15 41932222 41932333 -43763421 + MIR SINE MIR 122 241 -21 2084 118 0 45 chr15 41934044 41934358 -43761396 - AluSx SINE Alu -12 300 1 936 218 6 0 chr15 41935187 41935361 -43760393 - FRAM SINE Alu -1 175 1 2187 122 30 0 chr15 41935967 41936270 -43759484 + AluSx SINE Alu 1 312 0 568 153 10 10 chr15 41936450 41936548 -43759206 + FLAM_A SINE Alu 35 132 -10 697 206 101 63 chr15 41936585 41936638 -43759116 - L1MC5 LINE L1 -169 7792 7743 1114 154 46 0 chr15 41936638 41936813 -43758941 - MER5A DNA MER1_type -2 187 5 697 206 101 63 chr15 41936813 41937045 -43758709 - L1MC5 LINE L1 -218 7743 7496 2271 97 0 26 chr15 41937126 41937434 -43758320 + AluSx SINE Alu 1 300 -12 522 252 77 13 chr15 41937587 41937742 -43758012 + MIR SINE MIR 79 243 -19 241 275 59 128 chr15 41937905 41938225 -43757529 + L2 LINE L2 2397 2694 -620 206 250 33 0 chr15 41938229 41938289 -43757465 + CT-rich Low_complexity Low_complexity 2 63 0 2771 142 22 73 chr15 41938481 41939066 -43756688 - LTR10A LTR ERV1 -54 555 1 327 291 126 20 chr15 41939106 41939257 -43756497 - L1ME LINE L1 -387 5783 5617 1952 192 108 78 chr15 41939289 41939931 -43755823 + MER67B LTR ERV1 1 661 0 929 302 78 43 chr15 41939967 41940088 -43755666 - L1ME LINE L1 -650 5516 5401 2048 73 0 4 chr15 41940088 41940358 -43755396 + AluSc SINE Alu 35 303 0 929 302 78 43 chr15 41940358 41941594 -43754160 - L1ME LINE L1 -765 5401 4112 396 333 156 21 chr15 41942112 41942490 -43753264 + L2 LINE L2 2832 3260 -12 2369 108 0 6 chr15 41942668 41942982 -43752772 + AluSx SINE Alu 1 312 0 2378 104 0 0 chr15 41943090 41943397 -43752357 + AluSx SINE Alu 1 307 -5 689 216 127 117 chr15 41943935 41944362 -43751392 + MLT1H LTR MaLR 119 549 0 2260 120 39 25 chr15 41944794 41945153 -43750601 + THE1B LTR MaLR 1 364 0 272 236 38 132 chr15 41945173 41945279 -43750475 - MER91C DNA MER1_type -16 124 29 404 98 0 0 chr15 41945324 41945375 -43750379 + Alu SINE Alu 1 51 -262 228 35 0 0 chr15 41945418 41945447 -43750307 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1485 166 0 39 chr15 41945472 41945731 -43750023 - AluJo SINE Alu -63 249 1 864 209 53 0 chr15 41946394 41946581 -43749173 - MER3 DNA MER1_type -8 201 5 2461 89 0 0 chr15 41947480 41947782 -43747972 + AluSg SINE Alu 1 302 -8 1860 163 23 3 chr15 41948596 41948902 -43746852 - AluJb SINE Alu 0 312 1 1205 190 80 80 chr15 41949490 41949777 -43745977 - MLT1A1 LTR MaLR -2 363 74 2226 96 0 3 chr15 41949777 41950080 -43745674 - AluSx SINE Alu -10 302 1 1205 190 80 80 chr15 41950080 41950155 -43745599 - MLT1A1 LTR MaLR -290 75 1 266 231 31 15 chr15 41950593 41950658 -43745096 + MIR SINE MIR 79 144 -118 231 376 54 13 chr15 41951203 41951352 -43744402 - L2 LINE L2 -1 3271 3117 275 291 136 39 chr15 41951489 41951878 -43743876 - L1ME4a LINE L1 -137 5984 5558 3231 152 18 2 chr15 41951886 41952386 -43743368 - MLT2B1 LTR ERVL 0 520 13 331 291 130 48 chr15 41952402 41952611 -43743143 - L1ME4a LINE L1 -780 5553 5321 1854 163 0 0 chr15 41952828 41953135 -43742619 - AluSx SINE Alu 0 312 6 1964 88 11 0 chr15 41953166 41953428 -43742326 - AluSg SINE Alu -45 265 1 884 117 44 0 chr15 41954391 41954528 -43741226 + FLAM_C SINE Alu 1 143 0 293 241 0 0 chr15 41955713 41955767 -43739987 - Zaphod DNA AcHobo 0 4031 3978 * 816 319 80 24 chr15 41955766 41956139 -43739615 - MER115 DNA AcHobo -240 453 60 2391 82 0 0 chr15 41957142 41957447 -43738307 + AluSx SINE Alu 1 305 -7 296 331 76 58 chr15 41957965 41958137 -43737617 - MER91A DNA MER1_type 0 196 22 2548 141 52 5 chr15 41958163 41958567 -43737187 + MSTA LTR MaLR 6 428 0 1624 157 16 36 chr15 41958642 41958947 -43736807 + AluJb SINE Alu 14 312 0 979 224 19 14 chr15 41959008 41959222 -43736532 + MER58A DNA MER1_type 10 224 0 1988 141 0 10 chr15 41959310 41959623 -43736131 + AluJb SINE Alu 1 310 -2 423 182 24 43 chr15 41959626 41959718 -43736036 + GA-rich Low_complexity Low_complexity 1 93 -442 2140 110 10 0 chr15 41959718 41960027 -43735727 + AluSq SINE Alu 1 312 -1 423 182 24 43 chr15 41960027 41960172 -43735582 + GA-rich Low_complexity Low_complexity 93 535 0 951 98 0 0 chr15 41960178 41960310 -43735444 + AluY SINE Alu 1 132 -179 201 74 0 0 chr15 41960310 41960337 -43735417 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 1155 45 0 19 chr15 41960339 41960495 -43735259 + AluY SINE Alu 127 279 -32 314 281 58 70 chr15 41960966 41961137 -43734617 + MER5B DNA MER1_type 10 178 0 228 337 22 22 chr15 41961514 41961606 -43734148 + MIR SINE MIR 121 212 -50 295 287 21 133 chr15 41961890 41962078 -43733676 + MER5A DNA MER1_type 10 176 -13 404 180 234 18 chr15 41962396 41962507 -43733247 + L2 LINE L2 3170 3304 -9 1998 177 64 33 chr15 41963149 41963602 -43732152 + MLT1C LTR MaLR 1 467 0 272 236 47 9 chr15 41963787 41963893 -43731861 + (TA)n Simple_repeat Simple_repeat 2 111 0 518 235 49 109 chr15 41964542 41964663 -43731091 - MIR SINE MIR -59 203 95 1737 159 7 0 chr15 41964663 41964952 -43730802 + AluSx SINE Alu 1 291 -21 518 235 49 109 chr15 41964952 41965013 -43730741 - MIR SINE MIR -167 95 32 2059 92 17 14 chr15 41965359 41965651 -43730103 + AluSq SINE Alu 1 293 -20 312 104 45 0 chr15 41965891 41965958 -43729796 + (TGGA)n Simple_repeat Simple_repeat 3 72 0 5255 234 84 52 chr15 41966447 41966804 -43728950 - L1MEc LINE L1 -3552 2663 2319 1897 134 0 61 chr15 41966804 41967132 -43728622 - AluSx SINE Alu -4 308 1 5255 234 84 52 chr15 41967132 41967532 -43728222 - L1MEc LINE L1 -3896 2319 1933 1994 132 13 0 chr15 41967532 41967835 -43727919 + AluJb SINE Alu 1 307 -5 5255 234 84 52 chr15 41967835 41967945 -43727809 - L1MEc LINE L1 -4282 1933 1828 2109 104 3 0 chr15 41967945 41968242 -43727512 - AluSg SINE Alu -11 299 2 5255 234 84 52 chr15 41968242 41969527 -43726227 - L1MEc LINE L1 -4387 1828 466 1556 179 184 41 chr15 41969535 41969971 -43725783 - MLT1D LTR MaLR -1 504 7 458 294 59 12 chr15 41970304 41970499 -43725255 + L1ME3A LINE L1 5556 5772 -392 342 209 90 0 chr15 41970514 41970581 -43725173 - LTR16C LTR ERVL -7 484 412 1290 270 95 12 chr15 41970641 41971052 -43724702 + LTR16A LTR ERVL 1 445 -5 1413 220 57 24 chr15 41971058 41971394 -43724360 - LTR16C LTR ERVL -144 347 1 226 254 90 0 chr15 41971394 41971461 -43724293 + L1ME3A LINE L1 5786 5858 -312 257 154 0 0 chr15 41971461 41971500 -43724254 + 5S rRNA rRNA 1 39 -82 242 295 0 0 chr15 41971500 41971605 -43724149 + L1ME3A LINE L1 5844 5948 -222 1734 143 7 4 chr15 41971869 41972141 -43723613 + AluJo SINE Alu 1 273 -39 25 65 0 0 chr15 41972143 41972189 -43723565 + AT_rich Low_complexity Low_complexity 1 46 0 5463 100 9 0 chr15 41972370 41973122 -43722632 - L1PA13 LINE L1 0 6163 5405 339 308 104 46 chr15 41973176 41973378 -43722376 - L1ME4a LINE L1 -76 6045 5856 1943 149 0 0 chr15 41973378 41973673 -43722081 - AluJb SINE Alu -17 295 1 339 308 104 46 chr15 41973673 41973882 -43721872 - L1ME4a LINE L1 -265 5856 5610 615 363 0 1 chr15 41974105 41974325 -43721429 + MIR SINE MIR 34 251 -11 277 300 50 20 chr15 41974850 41974950 -43720804 - MIR3 SINE MIR -103 105 3 200 313 0 0 chr15 41975324 41975372 -43720382 - MIR3 SINE MIR -47 161 114 194 271 0 0 chr15 41975921 41975969 -43719785 + L2 LINE L2 2190 2237 -1077 585 241 54 54 chr15 41976292 41976533 -43719221 + L2 LINE L2 2338 2578 -736 1723 181 3 49 chr15 41976549 41976908 -43718846 - Charlie4a DNA MER1_type -1516 445 104 1828 132 0 14 chr15 41976908 41977188 -43718566 + AluSx SINE Alu 1 276 -36 1723 181 3 49 chr15 41977188 41977214 -43718540 - Charlie4a DNA MER1_type -1857 104 78 470 140 10 0 chr15 41977219 41977319 -43718435 + (CA)n Simple_repeat Simple_repeat 2 102 0 518 288 44 48 chr15 41977392 41977609 -43718145 + L2 LINE L2 2597 2813 -500 3195 170 86 25 chr15 41977609 41978293 -43717461 + LTR8A LTR ERV1 2 727 0 518 288 44 48 chr15 41978293 41978520 -43717234 + L2 LINE L2 2813 3115 -198 4299 142 18 10 chr15 41978561 41979266 -43716488 + MER50 LTR ERV1 1 711 -23 1891 266 112 8 chr15 41980321 41980911 -43714843 - MER115 DNA AcHobo -28 665 15 295 157 114 14 chr15 41981049 41981119 -43714635 + MARNA DNA Mariner 311 387 -199 2025 117 0 23 chr15 41981399 41981699 -43714055 + AluSx SINE Alu 1 293 -19 2054 94 10 7 chr15 41981703 41981991 -43713763 + L1PA10 LINE L1 5872 6160 -8 316 286 14 86 chr15 41982386 41982591 -43713163 - MIR3 SINE MIR -64 198 6 237 313 58 8 chr15 41983734 41983836 -43711918 + MIR SINE MIR 80 144 -64 648 282 101 0 chr15 41983890 41984099 -43711655 - MIR SINE MIR -10 252 23 291 247 11 21 chr15 41984319 41984412 -43711342 - MIR SINE MIR -124 138 47 265 259 35 0 chr15 41985749 41985807 -43709947 + L2 LINE L2 3222 3281 -32 193 156 0 0 chr15 41985908 41985940 -43709814 + MIR SINE MIR 118 149 -113 1867 125 23 16 chr15 41986148 41986453 -43709301 + AluSx SINE Alu 1 307 -5 2320 90 0 3 chr15 41986455 41986767 -43708987 + AluY SINE Alu 1 311 0 331 287 33 16 chr15 41987002 41987124 -43708630 + MARNA DNA Mariner 322 445 -141 269 239 30 0 chr15 41987125 41987192 -43708562 + MER5B DNA MER1_type 7 75 -103 455 355 41 6 chr15 41987241 41987413 -43708341 - MIR SINE MIR 0 262 85 663 193 51 40 chr15 41987798 41987974 -43707780 - MER5B DNA MER1_type 0 178 1 543 268 20 20 chr15 41987989 41988142 -43707612 - MARNA DNA Mariner -160 426 274 356 277 27 68 chr15 41988668 41988764 -43706990 + MIR3 SINE MIR 65 154 -54 1510 177 0 14 chr15 41988764 41989046 -43706708 + AluJo SINE Alu 14 291 -21 356 277 27 68 chr15 41989046 41989097 -43706657 + MIR3 SINE MIR 154 206 -2 442 316 153 10 chr15 41989550 41989759 -43705995 + MIR SINE MIR 1 239 -23 790 156 32 26 chr15 41990650 41990804 -43704950 - MER5B DNA MER1_type -23 155 1 432 227 30 49 chr15 41990904 41991056 -43704698 - MIR SINE MIR -62 146 28 1185 125 0 6 chr15 41991223 41991399 -43704355 - L1PA10 LINE L1 -3 6165 5991 323 301 117 0 chr15 41991403 41991506 -43704248 - MIR SINE MIR -58 150 36 370 242 50 8 chr15 41991656 41991776 -43703978 + L1MC4 LINE L1 7917 8041 -1 2195 87 6 16 chr15 41991812 41992123 -43703631 + AluSc SINE Alu 1 308 -1 2778 117 52 27 chr15 41993357 41993449 -43702305 - LTR32 LTR ERVL 0 471 383 2427 65 0 0 chr15 41993449 41993755 -43701999 - AluY SINE Alu -5 306 1 2778 117 52 27 chr15 41993755 41994108 -43701646 - LTR32 LTR ERVL -88 383 15 260 247 27 14 chr15 41994293 41994331 -43701423 + CT-rich Low_complexity Low_complexity 1 37 -37 2380 69 7 0 chr15 41994331 41994636 -43701118 - AluY SINE Alu -4 307 1 260 247 27 14 chr15 41994636 41994670 -43701084 + CT-rich Low_complexity Low_complexity 37 74 0 388 162 141 119 chr15 41994859 41995044 -43700710 - MER53 DNA DNA 0 189 1 1519 185 26 0 chr15 41995286 41995589 -43700165 - AluJb SINE Alu 0 312 2 402 330 0 0 chr15 41995733 41995839 -43699915 - MIR SINE MIR -117 145 40 348 191 371 0 chr15 41996074 41996179 -43699575 + MER5B DNA MER1_type 1 144 -34 844 156 8 0 chr15 41996587 41996715 -43699039 - FLAM_C SINE Alu -4 129 1 412 293 34 54 chr15 41996859 41997064 -43698690 + MIR SINE MIR 60 260 -2 2224 98 3 0 chr15 41997154 41997450 -43698304 - AluSp SINE Alu -16 297 1 572 201 173 0 chr15 41997612 41997751 -43698003 + MER5A DNA MER1_type 21 183 -6 481 254 34 0 chr15 41997927 41998045 -43697709 - MIR SINE MIR -92 170 49 3128 146 28 38 chr15 41998237 41998282 -43697472 - L1MB7 LINE L1 -12 6172 6128 2198 112 0 6 chr15 41998282 41998594 -43697160 - AluSx SINE Alu -2 310 1 3128 146 28 38 chr15 41998594 41999156 -43696598 - L1MB7 LINE L1 -56 6128 5571 191 345 73 0 chr15 41999284 41999339 -43696415 - L2 LINE L2 -2135 1179 1121 511 239 75 22 chr15 41999375 41999509 -43696245 + MIR3 SINE MIR 25 165 -43 324 220 140 30 chr15 41999877 41999977 -43695777 - L1ME4a LINE L1 -4 6117 6007 281 96 110 14 chr15 41999977 42000050 -43695704 + L1MA8 LINE L1 6212 6291 0 410 251 211 35 chr15 42000088 42000259 -43695495 - L1ME4a LINE L1 -172 5949 5749 1836 143 4 0 chr15 42000835 42001114 -43694640 - AluSx SINE Alu -32 280 1 425 305 64 5 chr15 42001271 42001458 -43694296 + MLT1J1 LTR MaLR 1 198 -248 393 250 28 28 chr15 42001479 42001587 -43694167 + MLT1J2 LTR MaLR 266 373 -77 4796 131 87 50 chr15 42001855 42003241 -43692513 + pTR5 LTR ERV1 171 2295 -143 207 0 0 0 chr15 42003639 42003662 -43692092 + (CCTG)n Simple_repeat Simple_repeat 2 24 0 462 279 151 0 chr15 42003778 42003950 -43691804 - MIR SINE MIR -6 256 59 1803 266 91 11 chr15 42004662 42005507 -43690247 + L1ME3A LINE L1 5030 5950 -220 1585 191 10 7 chr15 42005551 42005855 -43689899 + AluJo SINE Alu 1 305 -7 381 282 106 45 chr15 42006342 42006580 -43689174 - MIR SINE MIR -11 251 3 239 258 367 0 chr15 42007068 42007196 -43688558 + MIR SINE MIR 78 252 -10 2116 113 3 0 chr15 42007239 42007540 -43688214 - AluSq SINE Alu -10 303 2 245 167 117 0 chr15 42007905 42007965 -43687789 + MIR SINE MIR 51 117 -91 2114 97 0 0 chr15 42008855 42009145 -43686609 + AluSx SINE Alu 7 296 -16 394 241 143 0 chr15 42009534 42009646 -43686108 + L2 LINE L2 3143 3270 -2 258 336 35 21 chr15 42010200 42010343 -43685411 - MIR SINE MIR -116 146 2 246 254 0 0 chr15 42010440 42010503 -43685251 + L1ME LINE L1 5600 5662 -459 26 30 0 0 chr15 42010515 42010548 -43685206 + AT_rich Low_complexity Low_complexity 1 33 0 466 291 24 86 chr15 42011171 42011223 -43684531 + MLT1L LTR MaLR 14 68 -547 2295 62 0 3 chr15 42011223 42011511 -43684243 + AluY SINE Alu 7 293 -18 466 291 24 86 chr15 42011511 42011750 -43684004 + MLT1L LTR MaLR 68 287 -328 256 315 14 0 chr15 42011871 42011944 -43683810 + MLT1L LTR MaLR 465 538 -77 345 309 0 0 chr15 42011981 42012065 -43683689 + L2 LINE L2 3230 3313 0 448 268 218 6 chr15 42012236 42012415 -43683339 + MIR SINE MIR 40 256 -6 2081 193 64 46 chr15 42012537 42012767 -43682987 + L1MC4 LINE L1 7358 7582 -460 2372 90 0 0 chr15 42012767 42013078 -43682676 + AluY SINE Alu 1 311 0 2081 193 64 46 chr15 42013078 42013173 -43682581 + L1MC4 LINE L1 7582 7674 -368 1005 181 0 0 chr15 42013173 42013339 -43682415 + FRAM SINE Alu 1 166 0 2081 193 64 46 chr15 42013339 42013573 -43682181 + L1MC4 LINE L1 7674 7928 -114 2060 78 51 7 chr15 42013582 42013876 -43681878 + AluSg1 SINE Alu 1 307 -2 465 81 0 35 chr15 42013880 42013967 -43681787 + (GGAA)n Simple_repeat Simple_repeat 2 85 0 234 116 0 0 chr15 42013968 42014011 -43681743 + (CAGG)n Simple_repeat Simple_repeat 1 43 0 2164 112 0 0 chr15 42014011 42014306 -43681448 + AluSx SINE Alu 8 302 -10 509 214 36 0 chr15 42014330 42014442 -43681312 + L1MC4 LINE L1 7921 8036 -6 811 182 0 7 chr15 42014570 42014718 -43681036 + FAM SINE Alu 12 158 -27 2418 63 0 0 chr15 42015039 42015339 -43680415 + AluY SINE Alu 1 300 -11 2187 76 3 7 chr15 42015617 42015907 -43679847 + AluSx SINE Alu 1 289 -23 445 288 98 38 chr15 42016636 42016820 -43678934 - MIR SINE MIR -20 242 48 800 181 71 33 chr15 42016919 42017101 -43678653 - MER5A DNA MER1_type 0 189 1 701 258 46 40 chr15 42017726 42017974 -43677780 - MIR SINE MIR -6 256 1 183 321 0 121 chr15 42018401 42018434 -43677320 - L2 LINE L2 -38 3275 3240 2081 76 45 7 chr15 42018434 42018725 -43677029 - AluSc SINE Alu -7 302 1 183 321 0 121 chr15 42018725 42018831 -43676923 - L2 LINE L2 -73 3240 3153 2035 111 0 3 chr15 42020052 42020341 -43675413 + AluSg SINE Alu 1 288 -22 2074 120 3 7 chr15 42020354 42020662 -43675092 + AluSx SINE Alu 1 307 -5 1923 121 4 0 chr15 42020662 42020942 -43674812 + AluSq SINE Alu 1 281 -32 240 35 0 0 chr15 42020944 42020973 -43674781 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 362 245 74 98 chr15 42021001 42021040 -43674714 - MIR SINE MIR -69 193 155 752 142 8 0 chr15 42021040 42021167 -43674587 - L1MB5 LINE L1 0 6174 6047 362 245 74 98 chr15 42021167 42021290 -43674464 - MIR SINE MIR -107 155 35 317 182 66 126 chr15 42021961 42022159 -43673595 + L1ME4a LINE L1 5936 6121 0 1972 137 10 0 chr15 42022159 42022458 -43673296 + AluSx SINE Alu 1 302 -10 2104 98 3 7 chr15 42023246 42023541 -43672213 + AluSq SINE Alu 1 294 -19 194 88 0 29 chr15 42024269 42024303 -43671451 + (GGGA)n Simple_repeat Simple_repeat 2 34 0 228 278 153 0 chr15 42024551 42024623 -43671131 - MIR SINE MIR -75 187 105 2351 65 10 0 chr15 42025154 42025448 -43670306 - AluY SINE Alu -14 297 1 504 186 115 35 chr15 42025709 42025822 -43669932 + AluJb SINE Alu 129 250 -62 1701 146 74 26 chr15 42025824 42026215 -43669539 - Charlie1 DNA MER1_type -44 2717 2308 653 217 36 36 chr15 42026215 42026292 -43669462 - Charlie1 DNA MER1_type -2595 166 90 1883 127 37 0 chr15 42026292 42026592 -43669162 + AluSx SINE Alu 1 311 -1 653 217 36 36 chr15 42026592 42026680 -43669074 - Charlie1 DNA MER1_type -2670 91 1 525 269 6 32 chr15 42026698 42026854 -43668900 + L1MC/D LINE L1 5665 5816 -1992 2090 97 17 0 chr15 42027400 42027688 -43668066 + AluSp SINE Alu 1 293 -20 450 282 39 70 chr15 42028208 42028466 -43667288 + L1M4 LINE L1 4787 5031 -1115 1623 160 24 7 chr15 42028466 42028759 -43666995 + AluJo SINE Alu 6 303 -9 450 282 39 70 chr15 42028759 42028883 -43666871 + L1M4 LINE L1 5031 5157 -989 1978 128 0 3 chr15 42028884 42029198 -43666556 + AluSq SINE Alu 1 313 0 2193 67 7 3 chr15 42029273 42029557 -43666197 + AluSp SINE Alu 3 287 -26 2126 158 57 21 chr15 42029606 42030025 -43665729 - L1MB5 LINE L1 -8 6166 5733 464 238 54 71 chr15 42030164 42030274 -43665480 - MIR3 SINE MIR -27 181 72 1177 158 126 12 chr15 42030274 42030555 -43665199 + AluJo SINE Alu 1 310 0 464 238 54 71 chr15 42030555 42030611 -43665143 - MIR3 SINE MIR -136 72 17 391 240 58 10 chr15 42030900 42031004 -43664750 + MIR SINE MIR 70 178 -84 187 328 62 0 chr15 42031594 42031658 -43664096 - L2 LINE L2 -530 2784 2717 494 306 45 6 chr15 42031760 42031917 -43663837 - L2 LINE L2 0 3313 3151 211 204 45 0 chr15 42033004 42033048 -43662706 - MIR3 SINE MIR -6 202 157 188 308 138 31 chr15 42033140 42033270 -43662484 - L2 LINE L2 -2 3311 3168 830 103 9 0 chr15 42033294 42033410 -43662344 + FLAM_C SINE Alu 1 117 -16 195 317 50 0 chr15 42033506 42033566 -43662188 - L2 LINE L2 -257 3056 2994 260 356 48 14 chr15 42033885 42034031 -43661723 - MIR SINE MIR -77 185 35 233 284 181 9 chr15 42034639 42034755 -43660999 + MIR SINE MIR 119 254 -8 32 57 0 0 chr15 42035391 42035444 -43660310 + GC_rich Low_complexity Low_complexity 1 53 0 21 95 0 0 chr15 42035871 42035934 -43659820 + GC_rich Low_complexity Low_complexity 1 63 0 278 296 35 56 chr15 42038287 42038429 -43657325 + MIR SINE MIR 59 197 -65 2269 160 69 18 chr15 42038705 42039199 -43656555 - Charlie1b DNA MER1_type 0 523 5 193 265 82 31 chr15 42042071 42042169 -43653585 - MIR SINE MIR -72 190 88 1724 135 67 3 chr15 42042928 42043210 -43652544 - AluSg1 SINE Alu -9 300 1 881 76 0 54 chr15 42043241 42043426 -43652328 + (TTC)n Simple_repeat Simple_repeat 2 176 0 1886 132 21 0 chr15 42043428 42043717 -43652037 - AluSg SINE Alu -15 295 1 1561 179 24 7 chr15 42044342 42044639 -43651115 - AluJo SINE Alu 0 312 11 2204 252 140 67 chr15 42046779 42048013 -43647741 - HAL1 LINE L1 -45 2462 1084 1222 29 0 65 chr15 42048013 42048183 -43647571 - L1PA4 LINE L1 0 6155 5997 2204 252 140 67 chr15 42048183 42048550 -43647204 - HAL1 LINE L1 -1423 1084 745 357 264 33 85 chr15 42048784 42048996 -43646758 - HAL1 LINE L1 -2268 239 39 2367 200 78 66 chr15 42049522 42049748 -43646006 - L1MD3 LINE L1 0 8042 7820 2338 82 0 0 chr15 42049748 42050039 -43645715 - AluY SINE Alu -20 291 1 2367 200 78 66 chr15 42050039 42051412 -43644342 - L1MD3 LINE L1 -222 7820 6346 2152 92 7 0 chr15 42051530 42051813 -43643941 - AluSq SINE Alu -3 310 26 380 265 256 0 chr15 42052131 42052350 -43643404 - L1MD3 LINE L1 -1947 5861 5587 2041 113 19 23 chr15 42052741 42053050 -43642704 - AluSg SINE Alu -2 308 1 1919 100 50 14 chr15 42053635 42053779 -43641975 - AluSx SINE Alu -22 290 153 2627 49 0 0 chr15 42053779 42054083 -43641671 - AluY SINE Alu -7 304 1 1919 100 50 14 chr15 42054083 42054218 -43641536 - AluSx SINE Alu -159 153 1 2264 87 3 10 chr15 42054510 42054810 -43640944 + AluSc SINE Alu 1 298 -11 359 237 50 65 chr15 42056491 42056630 -43639124 + MIR3 SINE MIR 14 150 -58 544 233 47 0 chr15 42056797 42056947 -43638807 - L1MC/D LINE L1 -2006 5802 5646 541 226 0 0 chr15 42057515 42057621 -43638133 - AluJ SINE Alu -19 293 188 883 126 0 0 chr15 42057621 42057740 -43638014 - AluJ SINE Alu -191 121 3 450 323 77 14 chr15 42058769 42058989 -43636765 - MIR SINE MIR -6 256 23 1092 234 66 80 chr15 42059980 42060543 -43635211 - MLT1H1 LTR MaLR 0 555 1 28 61 0 0 chr15 42061616 42061665 -43634089 + AT_rich Low_complexity Low_complexity 1 49 0 484 269 194 0 chr15 42061881 42062056 -43633698 + MIR SINE MIR 49 257 -5 1905 144 0 7 chr15 42062472 42062764 -43632990 - AluJb SINE Alu -21 291 2 368 290 122 0 chr15 42062789 42062920 -43632834 - MIR3 SINE MIR -28 180 34 627 148 10 20 chr15 42064632 42064733 -43631021 - FLAM_A SINE Alu -42 100 1 964 168 5 11 chr15 42064878 42065063 -43630691 - L1MB5 LINE L1 -7 6167 5984 1779 162 0 20 chr15 42065417 42065720 -43630034 + AluJb SINE Alu 1 297 -15 390 115 0 0 chr15 42065816 42065877 -43629877 + (TCCC)n Simple_repeat Simple_repeat 4 64 0 1606 192 49 0 chr15 42065895 42066181 -43629573 - AluJb SINE Alu -12 300 1 1622 179 91 30 chr15 42066761 42067168 -43628586 - LTR37B LTR ERV1 -36 432 1 239 158 0 0 chr15 42067272 42067310 -43628444 - L2 LINE L2 -9 3304 3267 258 296 79 66 chr15 42067373 42067525 -43628229 - MER5B DNA MER1_type -1 177 24 346 199 103 32 chr15 42068609 42068765 -43626989 - L1MC5 LINE L1 -50 7911 7745 336 48 0 0 chr15 42070477 42070519 -43625235 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2022 125 4 0 chr15 42070520 42070799 -43624955 - AluSx SINE Alu -32 280 1 707 294 23 0 chr15 42070978 42071155 -43624599 - MIR SINE MIR -71 191 11 1985 76 0 24 chr15 42072184 42072434 -43623320 + AluY SINE Alu 50 293 -18 2184 108 3 3 chr15 42073256 42073552 -43622202 - AluSp SINE Alu -15 298 3 2055 71 11 4 chr15 42074112 42074378 -43621376 - AluY SINE Alu -7 304 37 22 0 0 0 chr15 42077477 42077499 -43618255 + AT_rich Low_complexity Low_complexity 1 22 0 447 138 174 0 chr15 42077810 42077919 -43617835 + MER3 DNA MER1_type 82 209 0 344 242 77 99 chr15 42078157 42078544 -43617210 + L1M4 LINE L1 3875 4261 -1885 208 236 0 36 chr15 42078892 42078947 -43616807 - MIR SINE MIR -3 259 207 603 245 148 73 chr15 42079124 42079496 -43616258 + Charlie7 DNA MER1_type 263 672 -1940 959 114 0 0 chr15 42079496 42079628 -43616126 + FLAM_C SINE Alu 1 132 -1 603 245 148 73 chr15 42079628 42079680 -43616074 + Charlie7 DNA MER1_type 672 719 -1893 276 184 34 75 chr15 42079678 42079825 -43615929 + Charlie7 DNA MER1_type 2422 2562 -50 * 743 185 20 31 chr15 42079887 42080106 -43615648 - LTR38B LTR ERV1 0 611 397 2089 133 0 3 chr15 42081256 42081564 -43614190 + AluJo SINE Alu 1 307 -5 1795 98 0 8 chr15 42082149 42082383 -43613371 - AluSx SINE Alu -78 234 3 315 170 0 16 chr15 42082387 42082451 -43613303 - FLAM SINE Alu -1 132 76 970 158 43 6 chr15 42082454 42082618 -43613136 - AluSq SINE Alu -9 304 135 8042 166 96 86 chr15 42082719 42083782 -43611972 - Charlie5 DNA MER1_type 0 2624 1573 2082 102 0 34 chr15 42083782 42084076 -43611678 - AluSc SINE Alu -25 284 1 8042 166 96 86 chr15 42084076 42084633 -43611121 - Charlie5 DNA MER1_type -1051 1573 1023 776 130 22 43 chr15 42084633 42084771 -43610983 + FLAM_C SINE Alu 1 135 -8 8042 166 96 86 chr15 42084771 42085559 -43610195 - Charlie5 DNA MER1_type -1601 1023 53 789 177 171 0 chr15 42089104 42089279 -43606475 + MER3 DNA MER1_type 1 205 -4 1270 146 8 65 chr15 42090834 42091010 -43604744 - AluSx SINE Alu -17 295 135 2212 129 0 0 chr15 42091010 42091321 -43604433 - AluSx SINE Alu -1 311 1 1270 146 8 65 chr15 42091321 42091390 -43604364 - AluSx SINE Alu -177 135 64 735 219 102 15 chr15 42091985 42092181 -43603573 + MIR SINE MIR 16 228 -34 426 209 80 133 chr15 42092233 42092348 -43603406 - MER58C DNA MER1_type -2207 213 114 2241 101 0 10 chr15 42092348 42092646 -43603108 + AluSx SINE Alu 1 295 -17 426 209 80 133 chr15 42092646 42092755 -43602999 - MER58C DNA MER1_type -2306 114 1 848 86 86 0 chr15 42092809 42092937 -43602817 + MER85 DNA T2_type 1 139 0 203 265 118 0 chr15 42093059 42093127 -43602627 - MIR SINE MIR -121 141 66 1003 259 92 51 chr15 42094333 42094842 -43600912 - LTR67 LTR ERVL -9 548 19 590 224 141 28 chr15 42094970 42095260 -43600494 - MLT1J LTR MaLR -6 505 183 421 309 65 37 chr15 42097223 42097440 -43598314 - MIR SINE MIR 0 262 40 2364 100 0 0 chr15 42148472 42148781 -43546973 + AluSq SINE Alu 1 309 -4 39 38 0 0 chr15 42149115 42149168 -43546586 + AT_rich Low_complexity Low_complexity 1 53 0 2055 98 0 7 chr15 42149793 42150070 -43545684 + AluSx SINE Alu 1 275 -37 2126 124 0 29 chr15 42152114 42152429 -43543325 - AluJo SINE Alu -6 306 1 2253 118 0 0 chr15 42153354 42153651 -43542103 - AluSx SINE Alu -15 297 1 567 298 30 30 chr15 42153759 42153994 -43541760 - MIR SINE MIR -11 251 17 21 36 0 0 chr15 42154741 42154769 -43540985 + AT_rich Low_complexity Low_complexity 1 28 0 458 256 0 0 chr15 42156157 42156243 -43539511 + MIR3 SINE MIR 76 161 -47 1546 177 61 18 chr15 42156284 42156611 -43539143 + MER7A DNA MER2_type 7 345 -1 1271 180 16 4 chr15 42157634 42157890 -43537864 - L1MD3 LINE L1 -8 7987 7729 22 35 0 0 chr15 42158748 42158777 -43536977 + AT_rich Low_complexity Low_complexity 1 29 0 2056 148 0 3 chr15 42159422 42159719 -43536035 - AluSx SINE Alu -16 296 1 681 286 30 30 chr15 42159822 42160021 -43535733 + MIR3 SINE MIR 5 203 -5 415 293 61 6 chr15 42161366 42161547 -43534207 + Charlie8 DNA MER1_type 10 200 -2217 203 149 0 43 chr15 42163579 42163600 -43532154 + (A)n Simple_repeat Simple_repeat 1 21 -24 2178 108 0 25 chr15 42163600 42163915 -43531839 + AluSg SINE Alu 1 307 -3 203 149 0 43 chr15 42163915 42163940 -43531814 + (A)n Simple_repeat Simple_repeat 21 45 0 3425 117 4 15 chr15 42163961 42164053 -43531701 + L1PB4 LINE L1 5346 5438 -718 2236 110 3 25 chr15 42164053 42164370 -43531384 + AluSx SINE Alu 1 310 -2 3425 117 4 15 chr15 42164370 42164867 -43530887 + L1PB4 LINE L1 5438 5930 -226 377 127 0 0 chr15 42164864 42164927 -43530827 + L1M1 LINE L1 5465 5527 -776 * 802 242 10 0 chr15 42164929 42165123 -43530631 + L1PB4 LINE L1 5943 6138 -18 302 286 101 8 chr15 42165811 42165930 -43529824 + L1MC4a LINE L1 6051 6180 -1628 2265 72 0 0 chr15 42166153 42166469 -43529285 + AluSc SINE Alu 1 316 0 1734 102 126 12 chr15 42167201 42167478 -43528276 + AluSx SINE Alu 1 306 0 883 200 0 24 chr15 42167498 42167663 -43528091 - AluJb SINE Alu -16 296 136 1915 144 4 0 chr15 42168837 42169150 -43526604 + AluSg SINE Alu 1 314 0 1932 152 10 0 chr15 42169740 42170030 -43525724 - AluSx SINE Alu -19 293 1 1952 116 35 11 chr15 42170159 42170443 -43525311 + AluSx SINE Alu 1 291 -21 1020 221 135 7 chr15 42170542 42170845 -43524909 + MER2 DNA MER2_type 3 344 0 2149 93 0 51 chr15 42171572 42171884 -43523870 + AluSx SINE Alu 1 296 -16 2174 132 0 0 chr15 42172073 42172376 -43523378 + AluSx SINE Alu 1 303 -9 2289 206 84 13 chr15 42173620 42174251 -43521503 - L1ME3A LINE L1 -67 6103 5428 623 104 10 0 chr15 42174262 42174358 -43521396 - FLAM_C SINE Alu -8 135 39 1093 258 50 32 chr15 42174366 42175032 -43520722 - L1ME3A LINE L1 -737 5433 4762 1662 191 7 10 chr15 42176255 42176554 -43519200 - AluJo SINE Alu -14 298 1 2056 145 0 3 chr15 42177038 42177349 -43518405 + AluSx SINE Alu 1 310 -2 376 260 53 65 chr15 42180424 42180541 -43515213 + MIR SINE MIR 96 212 -50 1738 166 3 17 chr15 42180541 42180836 -43514918 - AluJo SINE Alu -12 300 10 376 260 53 65 chr15 42180836 42180887 -43514867 + MIR SINE MIR 212 262 0 2148 92 3 14 chr15 42182337 42182631 -43513123 + AluSc SINE Alu 1 291 -18 229 118 0 0 chr15 42183686 42183720 -43512034 + AluJo SINE Alu 1 34 -99 3235 203 12 8 chr15 42183795 42184435 -43511319 - MER82 DNA MER2_type -9 644 2 558 226 25 20 chr15 42184443 42184647 -43511107 + L1MEc LINE L1 953 1157 -5239 497 291 19 19 chr15 42184645 42184855 -43510899 + L1MEc LINE L1 1880 2089 -4307 * 1199 144 5 5 chr15 42184857 42185058 -43510696 + Tigger2a DNA MER2_type 1 201 -233 423 205 13 0 chr15 42185058 42185136 -43510618 + Tigger2a DNA MER2_type 366 444 0 748 197 64 9 chr15 42185136 42185354 -43510400 + L1MEc LINE L1 2093 2322 -4074 1287 160 47 5 chr15 42185355 42185568 -43510186 + AluJb SINE Alu 61 282 -30 207 0 0 0 chr15 42185571 42185594 -43510160 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2686 216 50 16 chr15 42185595 42186419 -43509335 + L1MEc LINE L1 2278 3129 -3086 252 237 0 34 chr15 42187024 42187083 -43508671 - L2 LINE L2 -63 3250 3194 1544 165 6 68 chr15 42187869 42188005 -43507749 + AluJo SINE Alu 12 155 -157 2343 102 0 3 chr15 42188005 42188308 -43507446 + AluSp SINE Alu 1 302 -11 1544 165 6 68 chr15 42188308 42188492 -43507262 + AluJo SINE Alu 155 312 0 435 275 67 11 chr15 42188633 42188811 -43506943 + MER5A DNA MER1_type 1 188 -1 381 269 60 60 chr15 42189312 42189494 -43506260 + MIR3 SINE MIR 19 200 -8 22 0 0 0 chr15 42190294 42190316 -43505438 + AT_rich Low_complexity Low_complexity 1 22 0 221 311 0 0 chr15 42190483 42190544 -43505210 + GA-rich Low_complexity Low_complexity 3 63 0 569 205 36 9 chr15 42190545 42190657 -43505097 + L2 LINE L2 3195 3309 -4 22 0 0 0 chr15 42190762 42190784 -43504970 + AT_rich Low_complexity Low_complexity 1 22 0 2207 108 0 0 chr15 42190818 42191104 -43504650 - AluSx SINE Alu -20 292 7 24 0 0 0 chr15 42191313 42191337 -43504417 + AT_rich Low_complexity Low_complexity 1 24 0 846 204 61 0 chr15 42192454 42192635 -43503119 - MER58A DNA MER1_type 0 224 33 2081 134 7 0 chr15 42192989 42193287 -43502467 - AluSx SINE Alu -12 300 1 2223 123 7 0 chr15 42193560 42193869 -43501885 + AluSx SINE Alu 1 311 -1 945 148 0 19 chr15 42194037 42194133 -43501621 - MER46A DNA MER2_type 0 236 144 573 150 14 143 chr15 42194133 42194280 -43501474 + MER46A DNA MER2_type 1 128 -108 576 299 95 14 chr15 42195909 42196120 -43499634 + MIR SINE MIR 35 262 0 338 198 40 69 chr15 42196592 42196693 -43499061 + L1MEd LINE L1 362 459 -5660 291 28 0 0 chr15 42198257 42198293 -43497461 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1811 169 18 0 chr15 42198305 42198577 -43497177 - AluJo SINE Alu -30 282 6 1460 236 54 68 chr15 42198587 42199120 -43496634 + MER68 LTR ERV1 34 559 -3 383 318 23 47 chr15 42199137 42199351 -43496403 + MER68-int LTR ERV1 18 226 -3965 * 1078 248 47 52 chr15 42199190 42199577 -43496177 + HERVL68 LTR ERVL 22 406 -2631 770 169 0 8 chr15 42199578 42199708 -43496046 + FLAM_C SINE Alu 5 133 -10 2084 167 35 80 chr15 42199801 42199939 -43495815 + HERVL68 LTR ERVL 640 783 -2254 2080 157 0 0 chr15 42199939 42200251 -43495503 + AluSx SINE Alu 1 312 0 2084 167 35 80 chr15 42200251 42200734 -43495020 + HERVL68 LTR ERVL 783 1233 -1804 801 201 6 24 chr15 42200735 42200899 -43494855 - FRAM SINE Alu -15 161 1 1187 202 60 17 chr15 42200914 42201216 -43494538 + HERVL68 LTR ERVL 1239 1553 -1484 4116 211 87 34 chr15 42201216 42201811 -43493943 + HERVL68 LTR ERVL 1670 2232 -805 2323 100 0 3 chr15 42201811 42202120 -43493634 + AluSx SINE Alu 1 308 -4 4116 211 87 34 chr15 42202120 42202806 -43492948 + HERVL68 LTR ERVL 2232 3018 -19 1582 198 45 50 chr15 42202820 42203198 -43492556 + MER68 LTR ERV1 1 376 -186 429 199 53 38 chr15 42203209 42203340 -43492414 - L1MD3 LINE L1 -1 7994 7862 681 345 95 43 chr15 42203697 42204343 -43491411 - L2 LINE L2 -5 3267 2590 2267 117 0 0 chr15 42204343 42204643 -43491111 + AluSg SINE Alu 1 300 -10 1647 278 158 38 chr15 42204657 42205803 -43489951 - L2 LINE L2 0 3313 2013 257 208 0 0 chr15 42206096 42206144 -43489610 + L2 LINE L2 2687 2734 -580 2319 94 3 13 chr15 42207034 42207342 -43488412 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr15 42207671 42207692 -43488062 + AT_rich Low_complexity Low_complexity 1 21 0 510 232 124 41 chr15 42208039 42208254 -43487500 - MIR SINE MIR -32 230 6 2125 140 0 0 chr15 42208336 42208644 -43487110 + AluSx SINE Alu 1 308 -4 685 178 15 15 chr15 42208914 42209049 -43486705 + L1MB4 LINE L1 6040 6174 -6 1926 120 11 0 chr15 42210054 42210320 -43485434 + AluSx SINE Alu 4 272 -40 204 233 0 0 chr15 42210938 42210981 -43484773 + CT-rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr15 42211533 42211570 -43484184 + AT_rich Low_complexity Low_complexity 1 37 0 22 70 0 0 chr15 42211937 42211980 -43483774 + AT_rich Low_complexity Low_complexity 1 43 0 1789 178 0 3 chr15 42211980 42212272 -43483482 - AluJb SINE Alu -21 291 1 2404 72 0 7 chr15 42212319 42212623 -43483131 - AluSx SINE Alu -10 302 1 419 308 52 43 chr15 42213478 42213689 -43482065 + MIR SINE MIR 5 217 -45 21 0 0 0 chr15 42213867 42213888 -43481866 + AT_rich Low_complexity Low_complexity 1 21 0 2505 139 68 55 chr15 42213888 42214387 -43481367 - L1MD3 LINE L1 -16 7979 7471 2484 82 0 0 chr15 42214387 42214691 -43481063 - AluSq SINE Alu -9 304 1 2505 139 68 55 chr15 42214691 42214739 -43481015 - L1MD3 LINE L1 -524 7471 7425 632 220 28 7 chr15 42214739 42214880 -43480874 - MLT1F1 LTR MaLR -419 148 5 756 194 0 0 chr15 42214880 42215014 -43480740 - L1MD3 LINE L1 -716 7279 7146 2146 125 0 7 chr15 42215070 42215374 -43480380 + AluSq SINE Alu 1 302 -11 372 301 11 0 chr15 42217122 42217253 -43478501 - L1ME3A LINE L1 -287 5883 5774 474 61 0 0 chr15 42217602 42217668 -43478086 + Alu SINE Alu 239 304 -8 26 30 0 0 chr15 42217970 42218003 -43477751 + AT_rich Low_complexity Low_complexity 1 33 0 313 258 124 0 chr15 42218073 42218162 -43477592 - MIR3 SINE MIR -14 194 95 1200 176 62 0 chr15 42218371 42218581 -43477173 - MER58A DNA MER1_type 0 224 2 2129 113 0 0 chr15 42219705 42220012 -43475742 - AluSx SINE Alu 0 307 1 212 289 90 87 chr15 42220418 42220684 -43475070 - L2 LINE L2 -20 3252 2986 2213 112 0 13 chr15 42221042 42221347 -43474407 - AluSx SINE Alu -11 301 1 2074 116 0 7 chr15 42221490 42221783 -43473971 - AluSx SINE Alu -21 291 1 282 258 193 69 chr15 42221999 42222232 -43473522 - MIR SINE MIR 0 262 1 503 260 187 0 chr15 42222533 42222683 -43473071 + MER5A DNA MER1_type 9 186 -3 1913 90 11 4 chr15 42223205 42223472 -43472282 - AluSq SINE Alu -15 298 30 353 223 32 53 chr15 42223759 42223853 -43471901 + MIR SINE MIR 161 252 -10 2315 88 0 20 chr15 42223936 42224241 -43471513 + AluSg SINE Alu 1 299 -11 1755 131 9 95 chr15 42224718 42225055 -43470699 + AluJb SINE Alu 1 308 -4 2556 60 0 0 chr15 42225847 42226146 -43469608 - AluY SINE Alu -8 303 5 1247 186 147 8 chr15 42226271 42226529 -43469225 - AluJo SINE Alu -8 294 1 1980 125 7 16 chr15 42226862 42227165 -43468589 + AluJo SINE Alu 6 305 -7 22 0 0 0 chr15 42227341 42227363 -43468391 + AT_rich Low_complexity Low_complexity 1 22 0 2343 107 0 0 chr15 42228759 42229069 -43466685 + AluSx SINE Alu 1 310 -2 1720 115 16 80 chr15 42230110 42230422 -43465332 - AluJb SINE Alu -20 292 1 382 263 23 38 chr15 42230565 42230698 -43465056 - MIR SINE MIR -46 216 86 219 319 76 17 chr15 42231022 42231141 -43464613 - L2 LINE L2 -222 3050 2925 1293 265 78 17 chr15 42231562 42232148 -43463606 - L2 LINE L2 0 3313 2698 1688 148 70 0 chr15 42232164 42232435 -43463319 + AluJo SINE Alu 1 290 -22 202 357 0 0 chr15 42232838 42232908 -43462846 - MIR SINE MIR -94 114 45 663 333 110 43 chr15 42233227 42233735 -43462019 - L2 LINE L2 -562 2752 2211 22 80 0 0 chr15 42234931 42234981 -43460773 + AT_rich Low_complexity Low_complexity 1 50 0 918 196 16 0 chr15 42235054 42235238 -43460516 + MER5A DNA MER1_type 1 187 -2 2413 68 7 3 chr15 42235649 42235958 -43459796 - AluSg SINE Alu 0 310 1 443 306 110 10 chr15 42236167 42236376 -43459378 + MIR SINE MIR 13 242 -20 2101 95 6 57 chr15 42238683 42238998 -43456756 + AluSx SINE Alu 1 299 -13 926 312 109 38 chr15 42239018 42239195 -43456559 - L3 LINE CR1 -166 1411 1248 369 0 0 0 chr15 42239195 42239236 -43456518 + (CA)n Simple_repeat Simple_repeat 2 42 0 926 312 109 38 chr15 42239236 42239536 -43456218 - L3 LINE CR1 -329 1248 900 1688 261 124 25 chr15 42240120 42241060 -43454694 - L2 LINE L2 -6 3307 2273 1078 144 6 17 chr15 42241204 42241378 -43454376 - FRAM SINE Alu -4 172 1 2263 88 3 10 chr15 42242352 42242658 -43453096 + AluSx SINE Alu 1 304 -8 2046 140 0 16 chr15 42242961 42243276 -43452478 - AluSx SINE Alu -2 310 1 1937 142 9 19 chr15 42243558 42244026 -43451728 + MER44D DNA MER2_type 9 604 -1 276 109 0 43 chr15 42244691 42244737 -43451017 - tRNA-Cys-TGC tRNA tRNA -29 46 3 244 278 56 28 chr15 42244744 42244816 -43450938 + MER20B DNA MER1_type 97 170 -613 202 296 0 0 chr15 42245602 42245656 -43450098 + T-rich Low_complexity Low_complexity 1 54 0 2083 125 0 0 chr15 42247111 42247392 -43448362 - AluSx SINE Alu -31 281 1 521 303 82 33 chr15 42247547 42248035 -43447719 + L1M4 LINE L1 3223 3734 -2412 2314 108 0 0 chr15 42248106 42248412 -43447342 + AluSg SINE Alu 1 306 -4 460 256 83 8 chr15 42249262 42249383 -43446371 - L2 LINE L2 0 3313 3184 605 306 83 33 chr15 42249633 42250054 -43445700 - L2 LINE L2 -941 2373 1932 2272 98 0 10 chr15 42250851 42251158 -43444596 + AluSq SINE Alu 1 304 -9 1671 152 35 35 chr15 42251283 42251573 -43444181 + AluJo SINE Alu 1 290 -22 959 231 152 53 chr15 42251590 42251984 -43443770 + L1MC4 LINE L1 7623 7995 0 438 223 9 0 chr15 42252229 42252341 -43443413 - L1ME LINE L1 -318 5803 5691 2021 126 3 0 chr15 42253126 42253411 -43442343 - AluSx SINE Alu -26 286 1 2153 130 7 3 chr15 42254681 42254981 -43440773 + AluJo SINE Alu 1 301 -11 1668 191 0 25 chr15 42254990 42255304 -43440450 + AluJo SINE Alu 1 306 -6 452 295 71 104 chr15 42256165 42256443 -43439311 - L2 LINE L2 -6 3266 2999 1705 63 0 0 chr15 42256443 42256666 -43439088 + L1PA4 LINE L1 5931 6153 -2 452 295 71 104 chr15 42256666 42256723 -43439031 - L2 LINE L2 -273 2999 2942 336 309 49 8 chr15 42256734 42256857 -43438897 + MIR3 SINE MIR 81 208 0 1380 238 236 55 chr15 42257176 42257723 -43438031 + HAL1 LINE L1 126 573 -1934 2316 85 7 3 chr15 42257723 42258017 -43437737 - AluSx SINE Alu -17 295 1 1380 238 236 55 chr15 42258017 42258451 -43437303 + HAL1 LINE L1 573 1285 -1222 427 177 23 6 chr15 42258484 42258659 -43437095 + (TA)n Simple_repeat Simple_repeat 2 179 0 860 115 15 0 chr15 42258660 42258790 -43436964 - AluSq/x SINE Alu -180 132 1 718 252 5 14 chr15 42258825 42259043 -43436711 + HAL1 LINE L1 1382 1597 -910 1513 241 77 22 chr15 42259143 42259679 -43436075 + L1MD3 LINE L1 7429 7993 -2 827 186 40 25 chr15 42260107 42260306 -43435448 - L1MB7 LINE L1 -19 7584 7383 2090 128 3 0 chr15 42260306 42260595 -43435159 - AluSx SINE Alu -10 302 13 1978 163 3 0 chr15 42260781 42261082 -43434672 - AluSx SINE Alu -10 302 1 7081 185 39 29 chr15 42261082 42261897 -43433857 - L1MB7 LINE L1 -307 7296 6490 2382 86 0 0 chr15 42261897 42262198 -43433556 - AluSg SINE Alu -9 301 1 1837 95 72 4 chr15 42262202 42262465 -43433289 - AluSq SINE Alu -19 294 14 7081 185 39 29 chr15 42262465 42264002 -43431752 - L1MB7 LINE L1 -1115 6488 4915 * 11205 167 106 15 chr15 42264001 42264122 -43431632 - L1MB7 LINE L1 -5032 2533 2424 2335 106 0 10 chr15 42264122 42264434 -43431320 - AluSc SINE Alu 0 309 1 11205 167 106 15 chr15 42264434 42264982 -43430772 - L1MB7 LINE L1 -5141 2424 1928 495 0 0 0 chr15 42264982 42265037 -43430717 + (TG)n Simple_repeat Simple_repeat 2 56 0 327 25 0 0 chr15 42265036 42265076 -43430678 + (TC)n Simple_repeat Simple_repeat 1 40 0 * 11205 167 106 15 chr15 42265037 42266713 -43429041 - L1MB7 LINE L1 -5637 1928 15 1509 223 30 9 chr15 42266720 42267183 -43428571 - L1M4 LINE L1 -2811 3335 2863 214 374 72 56 chr15 42267445 42267640 -43428114 - L2 LINE L2 -76 3196 2999 215 290 32 54 chr15 42267684 42267777 -43427977 - L2 LINE L2 -995 2319 2229 2257 115 0 0 chr15 42268049 42268344 -43427410 + AluSx SINE Alu 1 295 -17 189 171 0 0 chr15 42268533 42268568 -43427186 + (CA)n Simple_repeat Simple_repeat 2 36 0 2036 149 0 0 chr15 42268815 42269103 -43426651 + AluSx SINE Alu 1 288 -24 1510 197 3 23 chr15 42271523 42271823 -43423931 + AluJb SINE Alu 3 296 -16 1850 127 59 35 chr15 42272001 42272341 -43423413 + MER7A DNA MER2_type 1 346 0 201 74 0 0 chr15 42272703 42272730 -43423024 + (TTA)n Simple_repeat Simple_repeat 1 27 0 261 221 177 39 chr15 42274394 42274575 -43421179 + L1ME4a LINE L1 5341 5546 -2262 398 263 70 90 chr15 42274577 42274764 -43420990 + L1ME4a LINE L1 5660 5838 -283 1963 163 0 0 chr15 42274764 42275058 -43420696 + AluJb SINE Alu 2 295 -17 398 263 70 90 chr15 42275058 42275227 -43420527 + L1ME4a LINE L1 5838 6009 -112 242 350 146 24 chr15 42275792 42275915 -43419839 + L2 LINE L2 3127 3264 -8 277 286 0 0 chr15 42276314 42276384 -43419370 + MER91A DNA MER1_type 9 78 -118 1574 196 18 7 chr15 42276385 42276670 -43419084 + AluJb SINE Alu 18 305 -7 630 282 134 18 chr15 42276784 42277061 -43418693 + L2 LINE L2 3003 3311 -2 255 194 111 28 chr15 42277063 42277135 -43418619 + MIR SINE MIR 119 196 -66 2081 147 6 13 chr15 42278124 42278438 -43417316 - AluSx SINE Alu 0 312 1 2354 94 0 0 chr15 42278580 42278878 -43416876 - AluSg SINE Alu -11 299 2 675 209 0 31 chr15 42279772 42279901 -43415853 - FLAM_A SINE Alu -8 125 1 228 304 61 40 chr15 42279977 42280125 -43415629 - L1ME LINE L1 -449 5672 5522 446 123 62 0 chr15 42281246 42281327 -43414427 + AluSg/x SINE Alu 215 300 -10 662 279 107 47 chr15 42281509 42282147 -43413607 + HAL1b LINE L1 60 735 -613 1892 137 7 29 chr15 42282169 42282475 -43413279 + AluJo SINE Alu 1 299 -13 934 271 11 47 chr15 42282761 42283123 -43412631 + L1MC4a LINE L1 6560 6908 -900 2106 123 0 3 chr15 42283191 42283496 -43412258 - AluSq SINE Alu 0 304 1 645 186 57 40 chr15 42283508 42283685 -43412069 + L1MC5 LINE L1 6959 7138 -823 253 64 21 43 chr15 42283688 42283735 -43412019 + LTR14B LTR ERVK 1 46 -562 * 1894 94 127 25 chr15 42283723 42284084 -43411670 + LTR14B LTR ERVK 211 608 0 711 226 102 22 chr15 42284084 42284446 -43411308 + L1MC5 LINE L1 7134 7524 -437 341 239 109 104 chr15 42284531 42284732 -43411022 + L1ME3A LINE L1 5958 6159 -3 1454 125 17 8 chr15 42285561 42285801 -43409953 + MER50 LTR ERV1 49 290 -444 250 176 0 20 chr15 42285802 42285852 -43409902 - FAM SINE Alu -25 141 93 2113 134 20 3 chr15 42285852 42286202 -43409552 + MER4C LTR ERV1 1 356 -109 2857 119 87 15 chr15 42286204 42286734 -43409020 + MER4B LTR ERV1 1 568 -42 345 86 35 0 chr15 42286731 42286789 -43408965 - AluSp/q SINE Alu -4 299 240 * 511 50 25 25 chr15 42286849 42286929 -43408825 + MER4C LTR ERV1 386 465 0 342 113 0 0 chr15 42286929 42286980 -43408774 - FAM SINE Alu -79 96 46 21 57 0 0 chr15 42287023 42287058 -43408696 + AT_rich Low_complexity Low_complexity 1 35 0 39 68 0 0 chr15 42287096 42287170 -43408584 + AT_rich Low_complexity Low_complexity 1 74 0 2081 123 32 0 chr15 42287177 42287461 -43408293 + AluSx SINE Alu 1 293 -19 1225 134 0 0 chr15 42287543 42287714 -43408040 - AluSp SINE Alu -7 306 136 2037 114 14 4 chr15 42287902 42288213 -43407541 - AluSx SINE Alu 0 314 1 808 249 82 67 chr15 42288362 42288703 -43407051 + L2 LINE L2 2949 3294 -19 2406 87 0 0 chr15 42290124 42290422 -43405332 + AluSx SINE Alu 1 298 -14 920 197 7 109 chr15 42290502 42290776 -43404978 + L2 LINE L2 2216 2461 -853 588 200 37 7 chr15 42290779 42290914 -43404840 + L1ME2 LINE L1 5548 5686 -478 359 191 92 84 chr15 42290915 42291046 -43404708 + L1ME2 LINE L1 5966 6097 -67 803 204 0 0 chr15 42291052 42291194 -43404560 + FLAM_C SINE Alu 1 142 -1 257 170 0 0 chr15 42291204 42291251 -43404503 + L1ME2 LINE L1 6108 6154 -10 432 259 87 11 chr15 42291736 42292000 -43403754 - L1P5 LINE L1 -611 5543 5268 331 334 120 55 chr15 42293180 42293746 -43402008 + L1M4c LINE L1 892 1494 -4890 366 319 49 6 chr15 42293787 42293950 -43401804 + L1M4c LINE L1 2697 2866 -3516 280 171 211 0 chr15 42293964 42294040 -43401714 - L1M4 LINE L1 -1311 4835 4744 2357 80 0 0 chr15 42294102 42294401 -43401353 + AluSc SINE Alu 1 299 -10 315 317 187 4 chr15 42294439 42294669 -43401085 - L1M4 LINE L1 -1533 4613 4342 2410 72 0 3 chr15 42294808 42295101 -43400653 + AluY SINE Alu 1 292 -19 14311 117 25 22 chr15 42295607 42298013 -43397741 + Tigger1 DNA MER2_type 1 2413 -5 2262 113 0 0 chr15 42298154 42298456 -43397298 + AluSc SINE Alu 1 302 -7 325 291 99 58 chr15 42298969 42299117 -43396637 + L1M4c LINE L1 3131 3272 -3110 1268 187 56 39 chr15 42299117 42299401 -43396353 + AluJo SINE Alu 1 289 -23 325 291 99 58 chr15 42299401 42299461 -43396293 + L1M4c LINE L1 3272 3328 -3054 1701 179 16 3 chr15 42299461 42299768 -43395986 + AluJb SINE Alu 1 311 -1 325 291 99 58 chr15 42299768 42299847 -43395907 + L1M4c LINE L1 3328 3402 -2980 874 150 0 8 chr15 42299847 42299980 -43395774 - FLAM_C SINE Alu -1 132 1 325 291 99 58 chr15 42299980 42300085 -43395669 + L1M4c LINE L1 3402 3541 -2841 958 203 0 11 chr15 42300090 42300267 -43395487 + FAM SINE Alu 1 175 0 2810 179 34 17 chr15 42300295 42300886 -43394868 + L1MB5 LINE L1 5566 6166 -8 439 111 0 0 chr15 42300895 42300967 -43394787 - AluSq SINE Alu -9 304 233 1139 121 0 0 chr15 42300967 42301116 -43394638 - AluSq SINE Alu -163 149 1 38 18 0 18 chr15 42301118 42301144 -43394610 + AT_rich Low_complexity Low_complexity 1 26 -29 2086 129 0 0 chr15 42301144 42301431 -43394323 - AluSx SINE Alu -25 287 1 38 18 0 18 chr15 42301431 42301460 -43394294 + AT_rich Low_complexity Low_complexity 26 55 0 690 185 0 0 chr15 42301593 42301701 -43394053 + FAM SINE Alu 1 108 -77 1279 151 27 13 chr15 42301739 42301964 -43393790 + AluJb SINE Alu 84 311 -1 1478 96 10 0 chr15 42302608 42302805 -43392949 + AluSq SINE Alu 1 199 -114 467 65 0 0 chr15 42302805 42302867 -43392887 + AluSq SINE Alu 240 301 -11 1850 133 7 18 chr15 42303062 42303384 -43392370 + AluSx SINE Alu 1 319 0 760 281 46 9 chr15 42303544 42303761 -43391993 + MIR SINE MIR 38 262 0 2351 55 3 3 chr15 42303843 42304133 -43391621 + AluY SINE Alu 1 290 -21 696 186 24 8 chr15 42304773 42304897 -43390857 - MER46A DNA MER2_type -63 173 48 342 274 57 9 chr15 42305763 42305869 -43389885 + MIR3 SINE MIR 87 197 -11 4509 179 34 28 chr15 42306199 42306672 -43389082 - MER21B LTR ERV1 -21 842 373 4694 103 13 11 chr15 42306672 42307303 -43388451 + MER41B LTR ERV1 1 632 -3 4509 179 34 28 chr15 42307303 42307341 -43388413 - MER21B LTR ERV1 -490 373 337 4710 74 2 0 chr15 42307341 42307894 -43387860 + MER41A LTR ERV1 1 554 0 4509 179 34 28 chr15 42307894 42308218 -43387536 - MER21B LTR ERV1 -526 337 1 2173 133 0 0 chr15 42308334 42308634 -43387120 + AluSx SINE Alu 5 304 -8 5095 51 8 2 chr15 42309140 42309727 -43386027 - LTR10C LTR ERV1 0 591 1 26 30 0 0 chr15 42309732 42309765 -43385989 + AT_rich Low_complexity Low_complexity 1 33 0 2034 175 61 160 chr15 42309964 42310048 -43385706 + LTR8A LTR ERV1 34 125 -602 4128 111 46 3 chr15 42310048 42310633 -43385121 - MER4B LTR ERV1 0 610 1 2034 175 61 160 chr15 42310633 42311318 -43384436 + LTR8A LTR ERV1 125 727 0 209 321 12 37 chr15 42311430 42311511 -43384243 - MIR SINE MIR -114 94 16 2079 147 3 10 chr15 42312765 42313079 -43382675 + AluJb SINE Alu 1 312 0 1480 161 59 53 chr15 42313401 42313705 -43382049 + AluJb SINE Alu 1 306 -6 306 348 22 7 chr15 42313872 42314007 -43381747 + L2 LINE L2 2851 2987 -285 272 322 86 13 chr15 42314101 42314253 -43381501 + L2 LINE L2 3021 3183 -130 2765 233 60 19 chr15 42314363 42315049 -43380705 + MER21B LTR ERV1 98 811 -52 316 341 57 24 chr15 42315069 42315192 -43380562 + L2 LINE L2 3141 3267 -5 514 251 137 14 chr15 42315348 42315567 -43380187 + L2 LINE L2 2150 2395 -919 210 200 211 44 chr15 42316384 42316474 -43379280 - MIR SINE MIR 0 262 158 1601 163 83 7 chr15 42316474 42316751 -43379003 + AluJo SINE Alu 1 298 -14 585 200 87 27 chr15 42316781 42316931 -43378823 - MIR SINE MIR -102 160 2 915 195 0 6 chr15 42316964 42317133 -43378621 - FRAM SINE Alu -8 168 1 3180 185 66 97 chr15 42317328 42317850 -43377904 + L1ME1 LINE L1 4656 5193 -973 2381 65 10 3 chr15 42317850 42318142 -43377612 + AluSq SINE Alu 1 294 -19 3180 185 66 97 chr15 42318142 42319190 -43376564 + L1ME1 LINE L1 5193 6161 -5 1725 193 13 0 chr15 42319211 42319516 -43376238 + AluJo SINE Alu 1 309 -3 807 167 23 0 chr15 42319712 42319844 -43375910 - FAM SINE Alu -8 41 1 214 267 13 27 chr15 42319851 42319926 -43375828 + L2 LINE L2 2979 3052 -220 1833 98 94 0 chr15 42320336 42320592 -43375162 - AluSg SINE Alu -30 280 1 368 317 61 51 chr15 42320751 42321140 -43374614 + LTR33 LTR ERVL 23 456 -65 1835 155 7 0 chr15 42321852 42322123 -43373631 - AluJo SINE Alu -30 282 10 850 143 21 29 chr15 42323383 42323523 -43372231 - FLAM_C SINE Alu -4 139 1 360 211 53 88 chr15 42323524 42323695 -43372059 + L1MC4 LINE L1 5730 5894 -1914 * 1298 184 28 14 chr15 42323669 42323957 -43371797 + L1MB4 LINE L1 5596 5887 -293 1561 282 75 36 chr15 42324209 42325007 -43370747 + L1MC4 LINE L1 7214 8042 0 2447 78 0 0 chr15 42325075 42325382 -43370372 + AluY SINE Alu 1 307 -4 689 223 10 100 chr15 42326259 42326568 -43369186 + L1M4 LINE L1 4404 4684 -1462 351 0 0 0 chr15 42326859 42326898 -43368856 + (CA)n Simple_repeat Simple_repeat 2 40 0 2196 103 30 0 chr15 42327335 42327637 -43368117 + AluSq SINE Alu 3 313 0 265 199 126 102 chr15 42327641 42327847 -43367907 + L1ME4a LINE L1 5905 6115 -6 1852 138 10 43 chr15 42328012 42328317 -43367437 - AluSx SINE Alu -17 295 1 245 222 83 14 chr15 42328504 42328576 -43367178 + MIR3 SINE MIR 119 195 -13 807 226 119 58 chr15 42328828 42329054 -43366700 + MIR SINE MIR 2 241 -21 2725 96 14 6 chr15 42329279 42329645 -43366109 - THE1C LTR MaLR -4 371 3 512 206 137 0 chr15 42329720 42329851 -43365903 + MER103 DNA DNA 9 157 -9 2011 199 70 95 chr15 42330339 42330981 -43364773 + L1MC5 LINE L1 7121 7740 -221 1990 133 0 0 chr15 42330981 42331266 -43364488 + AluSx SINE Alu 1 285 -27 2011 199 70 95 chr15 42331266 42331431 -43364323 + L1MC5 LINE L1 7740 7908 -53 35 0 0 0 chr15 42331707 42331742 -43364012 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr15 42332052 42332073 -43363681 + AT_rich Low_complexity Low_complexity 1 21 0 626 237 119 10 chr15 42333374 42333504 -43362250 + MIR SINE MIR 48 207 -55 982 149 17 6 chr15 42333504 42333685 -43362069 + L1MA8 LINE L1 6109 6291 0 626 237 119 10 chr15 42333685 42333748 -43362006 + MIR SINE MIR 207 262 0 766 202 16 0 chr15 42334234 42334363 -43361391 - FLAM_A SINE Alu -2 131 1 315 126 53 116 chr15 42334818 42334861 -43360893 - L1MB3 LINE L1 -8 6175 6140 2458 50 3 10 chr15 42334861 42335159 -43360595 - AluY SINE Alu -15 296 1 315 126 53 116 chr15 42335159 42335210 -43360544 - L1MB3 LINE L1 -43 6140 6087 288 333 61 0 chr15 42335235 42335349 -43360405 - MIR SINE MIR -119 143 23 409 288 72 45 chr15 42335938 42336230 -43359524 + L2 LINE L2 2165 2464 -850 344 209 100 27 chr15 42336230 42336340 -43359414 + L2 LINE L2 3191 3308 -5 923 120 0 23 chr15 42336344 42336477 -43359277 - FLAM_C SINE Alu -2 131 2 320 312 68 65 chr15 42336483 42336557 -43359197 + L2 LINE L2 2465 2537 -777 724 211 8 8 chr15 42336557 42336685 -43359069 + FLAM_A SINE Alu 2 129 -4 320 312 68 65 chr15 42336685 42336918 -43358836 + L2 LINE L2 2537 2773 -541 255 31 0 0 chr15 42337451 42337483 -43358271 + (GA)n Simple_repeat Simple_repeat 1 32 0 277 321 107 0 chr15 42338094 42338118 -43357636 + L2 LINE L2 2030 2050 -1264 282 56 0 0 chr15 42338118 42338154 -43357600 + (CA)n Simple_repeat Simple_repeat 2 37 0 277 321 107 0 chr15 42338154 42338260 -43357494 + L2 LINE L2 2050 2174 -1140 1757 128 0 0 chr15 42338260 42338502 -43357252 - AluSx SINE Alu -13 299 58 910 188 38 28 chr15 42338529 42338742 -43357012 + L2 LINE L2 3099 3313 0 2013 116 46 0 chr15 42338795 42339079 -43356675 - AluSx SINE Alu -15 297 1 410 305 144 0 chr15 42339336 42339523 -43356231 - LTR33A LTR ERVL -23 500 287 534 251 121 54 chr15 42339889 42340128 -43355626 + L3 LINE CR1 1315 1569 -8 2213 115 10 13 chr15 42340178 42340491 -43355263 - AluSx SINE Alu 0 312 1 2592 170 80 19 chr15 42340682 42341158 -43354596 + MLT1D LTR MaLR 1 505 0 2060 137 3 0 chr15 42341221 42341520 -43354234 + AluSx SINE Alu 1 300 -12 560 283 120 26 chr15 42341542 42341775 -43353979 + MIR SINE MIR 8 262 0 252 264 0 0 chr15 42341800 42341887 -43353867 + (CTA)n Simple_repeat Simple_repeat 1 87 0 1867 162 0 23 chr15 42341913 42342215 -43353539 + AluJo SINE Alu 1 295 -17 807 266 36 16 chr15 42342897 42343145 -43352609 + MIR SINE MIR 7 259 -3 2234 106 7 13 chr15 42343466 42343789 -43351965 + AluSq SINE Alu 1 313 0 2095 114 3 13 chr15 42343791 42344089 -43351665 + AluSg SINE Alu 1 295 -15 787 304 69 28 chr15 42344338 42344730 -43351024 + L1ME4a LINE L1 5497 5904 -217 2195 196 73 2 chr15 42344880 42345318 -43350436 + MLT1D LTR MaLR 1 469 -36 231 204 0 0 chr15 42345333 42345377 -43350377 - MLT1K LTR MaLR -413 175 132 22 56 0 0 chr15 42345456 42345492 -43350262 + AT_rich Low_complexity Low_complexity 1 36 0 1870 98 117 8 chr15 42345546 42345812 -43349942 - AluSg1 SINE Alu -14 295 1 3552 99 10 29 chr15 42345814 42346188 -43349566 - L1PA16 LINE L1 -12 6154 5791 1532 203 3 23 chr15 42346188 42346489 -43349265 - AluJo SINE Alu -14 298 4 3552 99 10 29 chr15 42346489 42346628 -43349126 - L1PA16 LINE L1 -375 5791 5651 5184 197 22 17 chr15 42346672 42347724 -43348030 - L1P LINE L1 -1007 5139 4094 2092 127 3 9 chr15 42347724 42348039 -43347715 - AluSp SINE Alu 0 313 1 1750 163 51 7 chr15 42348040 42348335 -43347419 - AluSx SINE Alu -4 308 1 5184 197 22 17 chr15 42348335 42348409 -43347345 - L1P LINE L1 -2051 4095 4005 471 176 29 0 chr15 42348403 42348505 -43347249 - L1MA8 LINE L1 -29 6262 6158 * 611 310 84 7 chr15 42348503 42348800 -43346954 - L1ME4a LINE L1 -252 5869 5550 248 289 62 31 chr15 42348966 42349063 -43346691 + L1MC5 LINE L1 5439 5538 -2270 366 345 0 0 chr15 42349230 42349349 -43346405 + L1MC5 LINE L1 5536 5654 -2154 512 297 93 0 chr15 42349503 42349685 -43346069 + MLT1J LTR MaLR 1 199 -312 1475 199 71 0 chr15 42349943 42350224 -43345530 - AluJo SINE Alu -11 301 1 2396 96 0 0 chr15 42350421 42350723 -43345031 + AluSx SINE Alu 1 302 -10 315 222 14 42 chr15 42351162 42351234 -43344520 - MER58A DNA MER1_type -37 70 1 611 279 44 77 chr15 42351234 42351531 -43344223 + L1MC5 LINE L1 7157 7443 -518 2484 104 8 33 chr15 42351572 42351700 -43344054 - THE1A LTR MaLR 0 355 225 2178 103 10 0 chr15 42351700 42351991 -43343763 - AluSg SINE Alu -16 294 1 2484 104 8 33 chr15 42351991 42352226 -43343528 - THE1A LTR MaLR -130 225 1 12629 90 10 1 chr15 42352226 42353792 -43341962 - THE1A-int LTR MaLR 0 1580 1 2241 136 17 3 chr15 42353792 42354137 -43341617 - THE1A LTR MaLR 0 355 6 261 129 35 71 chr15 42354275 42354360 -43341394 + L1ME3 LINE L1 5987 6068 -94 1258 121 0 0 chr15 42354414 42354587 -43341167 - AluSx SINE Alu -17 295 123 229 36 0 0 chr15 42354587 42354615 -43341139 + THE1A LTR MaLR 328 355 0 932 103 0 0 chr15 42354627 42354743 -43341011 - AluSx SINE Alu -189 123 8 1772 164 7 0 chr15 42354783 42355069 -43340685 - AluJo SINE Alu -24 288 1 23 78 0 0 chr15 42355071 42355122 -43340632 + AT_rich Low_complexity Low_complexity 1 51 0 3597 34 0 0 chr15 42355122 42355540 -43340214 - L1PA5 LINE L1 -8 6146 5729 2478 53 0 0 chr15 42355542 42355842 -43339912 - AluY SINE Alu -10 301 2 643 221 24 75 chr15 42355867 42356080 -43339674 + MLT1K LTR MaLR 325 526 -62 195 238 0 0 chr15 42356514 42356556 -43339198 - L2 LINE L2 -76 3196 3155 334 230 14 14 chr15 42357034 42357108 -43338646 + MIR SINE MIR 29 102 -160 1820 167 3 3 chr15 42357108 42357414 -43338340 - AluJo SINE Alu -6 306 1 1418 145 0 28 chr15 42357414 42357662 -43338092 + Tigger2 DNA MER2_type 2478 2718 0 2115 99 11 0 chr15 42358168 42358472 -43337282 - AluSq SINE Alu 0 307 1 205 185 213 65 chr15 42358519 42358627 -43337127 + MIR SINE MIR 139 262 0 * 269 297 11 11 chr15 42358616 42358707 -43337047 - MIR SINE MIR -101 161 71 501 248 107 84 chr15 42359004 42359387 -43336367 + MLT1K LTR MaLR 188 579 -9 1875 118 10 24 chr15 42359542 42359839 -43335915 + AluSx SINE Alu 18 310 -2 207 229 145 36 chr15 42360059 42360142 -43335612 + L2 LINE L2 3169 3260 -12 355 151 0 0 chr15 42361411 42361464 -43334290 - MER47B DNA MER2_type 0 418 366 1335 156 4 37 chr15 42361471 42361714 -43334040 + AluJo SINE Alu 1 235 -77 189 0 0 0 chr15 42361717 42361738 -43334016 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1721 156 124 3 chr15 42361762 42362077 -43333677 - MER47B DNA MER2_type -65 353 1 2102 104 0 10 chr15 42362494 42362791 -43332963 - AluSx SINE Alu -18 294 1 539 271 88 16 chr15 42362868 42363060 -43332694 + L2 LINE L2 3108 3313 0 233 287 127 40 chr15 42363064 42363214 -43332540 - MIR SINE MIR 0 262 100 2106 114 0 3 chr15 42363820 42364126 -43331628 + AluSx SINE Alu 6 310 -2 2236 93 7 0 chr15 42364356 42364657 -43331097 + AluSq SINE Alu 1 303 -10 685 242 100 21 chr15 42364901 42365141 -43330613 - MIR SINE MIR -2 260 2 262 283 141 10 chr15 42365437 42365536 -43330218 - L2 LINE L2 -4 3268 3157 381 93 0 0 chr15 42366399 42366453 -43329301 + (TG)n Simple_repeat Simple_repeat 1 54 0 21 36 0 0 chr15 42366457 42366485 -43329269 + GC_rich Low_complexity Low_complexity 1 28 0 246 269 291 8 chr15 42368062 42368196 -43327558 + L3b LINE CR1 1409 1580 -3 1727 185 0 0 chr15 42368794 42369097 -43326657 + AluJb SINE Alu 10 312 0 3802 186 55 14 chr15 42369460 42370314 -43325440 - L1MC4a LINE L1 -2 7806 6918 252 0 0 0 chr15 42370487 42370515 -43325239 + (A)n Simple_repeat Simple_repeat 1 28 0 228 35 0 0 chr15 42370515 42370544 -43325210 + (TA)n Simple_repeat Simple_repeat 1 29 0 962 196 94 76 chr15 42370544 42370843 -43324911 + L1MC4 LINE L1 5476 5768 -2040 1728 160 14 10 chr15 42370843 42371136 -43324618 + AluJb SINE Alu 1 294 -18 962 196 94 76 chr15 42371136 42371267 -43324487 + L1MC4 LINE L1 5768 5895 -1913 3394 136 48 7 chr15 42371267 42371847 -43323907 + L1MB7 LINE L1 5570 6173 -11 962 196 94 76 chr15 42371847 42372037 -43323717 + L1MC4 LINE L1 5895 6080 -1728 2224 99 3 0 chr15 42372037 42372339 -43323415 - AluSp SINE Alu -10 303 1 962 196 94 76 chr15 42372339 42372837 -43322917 + L1MC4 LINE L1 6080 6538 -1270 1701 163 0 13 chr15 42372837 42373137 -43322617 + AluJo SINE Alu 1 296 -16 962 196 94 76 chr15 42373137 42373207 -43322547 + L1MC4 LINE L1 6538 6605 -1203 897 149 24 12 chr15 42373334 42373502 -43322252 - AluJb SINE Alu -142 170 1 585 267 157 29 chr15 42373503 42373784 -43321970 - L1MC/D LINE L1 -1987 5821 5505 216 0 0 0 chr15 42373801 42373825 -43321929 + (TA)n Simple_repeat Simple_repeat 1 24 0 270 0 0 0 chr15 42373830 42373860 -43321894 + (T)n Simple_repeat Simple_repeat 1 30 0 2137 95 7 3 chr15 42374581 42374876 -43320878 + AluSq SINE Alu 1 296 -17 4426 176 60 36 chr15 42375140 42375332 -43320422 - L1MA9 LINE L1 -38 6274 6088 1432 172 38 17 chr15 42375332 42375622 -43320132 - AluSx SINE Alu -16 296 1 4426 176 60 36 chr15 42375622 42376083 -43319671 - L1MA9 LINE L1 -224 6088 5640 2224 103 0 3 chr15 42376083 42376393 -43319361 - AluY SINE Alu -2 309 1 4426 176 60 36 chr15 42376393 42376815 -43318939 - L1MA9 LINE L1 -672 5640 5164 924 173 30 41 chr15 42376899 42377096 -43318658 + MER105 DNA DNA 6 200 -4 522 208 50 0 chr15 42377149 42377269 -43318485 + MIR SINE MIR 66 191 -71 346 190 25 25 chr15 42377291 42377370 -43318384 + L2 LINE L2 2188 2266 -1048 1666 85 0 0 chr15 42377392 42377629 -43318125 + L1PA13 LINE L1 5907 6143 -18 1090 322 91 47 chr15 42377631 42378046 -43317708 + L2 LINE L2 2344 2739 -574 2267 85 0 0 chr15 42378046 42378341 -43317413 - AluSx SINE Alu -17 295 1 1090 322 91 47 chr15 42378341 42378832 -43316922 + L2 LINE L2 2739 3283 -30 1057 148 0 11 chr15 42378894 42379083 -43316671 - AluJb SINE Alu -6 306 120 1336 169 35 14 chr15 42379266 42379550 -43316204 - AluYa5 SINE Alu -11 290 1 1868 167 91 60 chr15 42380501 42380985 -43314769 - MLT1D LTR MaLR -2 503 5 874 206 65 32 chr15 42381148 42381395 -43314359 + Charlie4 DNA MER1_type 2 256 -1705 777 177 13 6 chr15 42381419 42381577 -43314177 + Charlie4 DNA MER1_type 1803 1961 0 2131 71 57 0 chr15 42382228 42382509 -43313245 - AluSx SINE Alu -15 297 1 1673 110 0 0 chr15 42382558 42382786 -43312968 - AluSg/x SINE Alu -11 299 72 219 219 0 0 chr15 42384118 42384159 -43311595 + CT-rich Low_complexity Low_complexity 2 42 0 2127 102 30 0 chr15 42386544 42386847 -43308907 + AluSx SINE Alu 1 312 0 2220 100 0 0 chr15 42390926 42391225 -43304529 + AluSx SINE Alu 1 299 -13 207 167 0 37 chr15 42393089 42393143 -43302611 + T-rich Low_complexity Low_complexity 2 53 0 233 169 17 0 chr15 42393868 42393927 -43301827 + (TG)n Simple_repeat Simple_repeat 2 61 0 23 0 0 0 chr15 42394190 42394213 -43301541 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr15 42394946 42394978 -43300776 + AT_rich Low_complexity Low_complexity 1 32 0 1970 123 3 3 chr15 42394978 42395271 -43300483 + AluSx SINE Alu 1 293 -19 1497 146 101 0 chr15 42395713 42395981 -43299773 - AluJb SINE Alu -17 295 1 829 84 0 8 chr15 42396961 42397080 -43298674 + AluSp/q SINE Alu 188 305 -8 1525 74 5 15 chr15 42397080 42397283 -43298471 - AluSp SINE Alu -112 201 1 794 170 75 6 chr15 42398822 42398981 -43296773 - MER45A DNA AcHobo 0 178 9 193 240 62 62 chr15 42400962 42401027 -43294727 + MIR SINE MIR 124 191 -71 2226 88 7 0 chr15 42401027 42401321 -43294433 + AluSx SINE Alu 1 296 -16 193 240 62 62 chr15 42401321 42401351 -43294403 + MIR SINE MIR 190 219 -43 395 285 173 32 chr15 42402166 42402514 -43293240 + L2 LINE L2 2635 3033 -239 1789 133 50 10 chr15 42402532 42402832 -43292922 - AluJb SINE Alu 0 312 1 1600 151 35 21 chr15 42403416 42403700 -43292054 - AluJb SINE Alu -24 288 1 510 211 32 87 chr15 42403955 42404034 -43291720 - MER5A DNA MER1_type -1 188 106 2551 27 0 0 chr15 42404034 42404331 -43291423 - AluY SINE Alu -14 297 1 510 211 32 87 chr15 42404331 42404436 -43291318 - MER5A DNA MER1_type -83 106 14 216 309 183 23 chr15 42404914 42405089 -43290665 + MIR SINE MIR 60 262 0 246 278 28 0 chr15 42405092 42405164 -43290590 - MER116 DNA Mariner -6 74 1 2210 91 7 0 chr15 42406365 42406674 -43289080 + AluSp SINE Alu 1 311 -2 312 224 51 31 chr15 42407441 42407539 -43288215 + Charlie8 DNA MER1_type 133 232 -2185 557 262 113 4 chr15 42407955 42408184 -43287570 - L1ME4a LINE L1 -178 5943 5690 180 313 36 36 chr15 42408555 42408638 -43287116 - L2 LINE L2 -3 3269 3187 1560 157 54 11 chr15 42409689 42409969 -43285785 - AluJo SINE Alu -20 292 1 4744 188 112 64 chr15 42410822 42410966 -43284788 + L1MC4 LINE L1 6506 6642 -1400 523 26 40 0 chr15 42410966 42411042 -43284712 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 4744 188 112 64 chr15 42411042 42411141 -43284613 + L1MC4 LINE L1 6642 6735 -1307 2031 121 0 3 chr15 42411141 42411430 -43284324 + AluSq SINE Alu 1 288 -25 4744 188 112 64 chr15 42411430 42412647 -43283107 + L1MC4 LINE L1 6735 8037 -5 423 216 153 60 chr15 42412692 42412960 -43282794 + L1ME4a LINE L1 5748 6040 -81 1085 124 0 0 chr15 42416093 42416246 -43279508 - AluSx SINE Alu -19 293 141 2086 87 7 17 chr15 42416249 42416548 -43279206 - AluSc SINE Alu -11 298 3 852 83 7 90 chr15 42416672 42416739 -43279015 - AluSx SINE Alu -179 133 83 1840 73 87 11 chr15 42416739 42417026 -43278728 + AluY SINE Alu 1 309 -2 852 83 7 90 chr15 42417026 42417103 -43278651 - AluSx SINE Alu -229 83 1 353 322 92 99 chr15 42417800 42418073 -43277681 - L2 LINE L2 -13 3259 2989 2120 96 0 17 chr15 42418389 42418682 -43277072 - AluSq SINE Alu -21 292 5 470 208 180 55 chr15 42420864 42420881 -43274873 - MER58C DNA MER1_type -2213 207 194 1782 96 0 4 chr15 42420881 42421131 -43274623 - AluSg1 SINE Alu -60 249 1 470 208 180 55 chr15 42421131 42421296 -43274458 - MER58C DNA MER1_type -2226 194 2 2241 93 0 0 chr15 42422869 42423169 -43272585 - AluSq SINE Alu -13 300 1 1171 179 15 5 chr15 42423172 42423373 -43272381 + MER20 DNA MER1_type 1 203 -16 24 0 0 0 chr15 42423586 42423610 -43272144 + AT_rich Low_complexity Low_complexity 1 24 0 369 228 121 54 chr15 42423759 42423908 -43271846 - L1ME1 LINE L1 -300 5866 5708 2123 89 0 0 chr15 42425256 42425587 -43270167 + AluSc SINE Alu 1 331 0 636 163 52 7 chr15 42426193 42426328 -43269426 - Charlie4 DNA MER1_type 0 1961 1821 1112 140 0 0 chr15 42426479 42426643 -43269111 - FRAM SINE Alu -20 156 1 2256 92 0 7 chr15 42426649 42426953 -43268801 - AluSx SINE Alu -10 302 1 852 271 92 18 chr15 42427188 42427608 -43268146 + L1ME3A LINE L1 5431 5911 -259 2295 67 3 3 chr15 42427608 42427908 -43267846 - AluY SINE Alu -11 300 1 852 271 92 18 chr15 42427908 42427949 -43267805 + L1ME3A LINE L1 5911 5948 -222 294 29 0 0 chr15 42427953 42427988 -43267766 + (TA)n Simple_repeat Simple_repeat 1 35 0 1538 177 91 86 chr15 42430461 42430924 -43264830 + MLT1C LTR MaLR 1 465 -2 258 348 43 22 chr15 42431102 42431240 -43264514 + MIR3 SINE MIR 53 193 -15 1415 175 3 92 chr15 42431278 42431603 -43264151 - AluJb SINE Alu -16 296 1 1546 118 0 13 chr15 42431638 42431866 -43263888 + AluJb SINE Alu 81 305 -7 1948 127 21 0 chr15 42432593 42432884 -43262870 - AluSx SINE Alu -15 297 1 1568 181 19 29 chr15 42432910 42433224 -43262530 + AluJo SINE Alu 1 311 -1 1032 157 0 0 chr15 42434526 42434692 -43261062 - AluSg/x SINE Alu -16 296 131 1948 123 3 13 chr15 42434774 42435075 -43260679 + AluSx SINE Alu 1 298 -14 2294 122 42 31 chr15 42435940 42436325 -43259429 + Tigger2a DNA MER2_type 1 389 -45 1281 134 4 69 chr15 42436537 42436768 -43258986 + AluJb SINE Alu 85 300 -12 846 141 7 0 chr15 42437337 42437472 -43258282 - FLAM_C SINE Alu -7 136 1 318 372 84 53 chr15 42437575 42438459 -43257295 + L2 LINE L2 2067 2977 -337 183 80 0 0 chr15 42438466 42438491 -43257263 + (TC)n Simple_repeat Simple_repeat 1 25 0 1950 152 0 3 chr15 42438491 42438794 -43256960 - AluSx SINE Alu -10 302 1 1203 162 33 14 chr15 42438809 42439019 -43256735 - MER20 DNA MER1_type 0 219 6 466 119 0 0 chr15 42439017 42439084 -43256670 + MER20 DNA MER1_type 149 215 -4 * 642 293 71 4 chr15 42439088 42439313 -43256441 - MER112 DNA MER1_type 0 260 21 794 83 9 0 chr15 42440763 42440872 -43254882 + HY1 scRNA scRNA 2 111 -1 1761 143 10 27 chr15 42441630 42441931 -43253823 + AluJo SINE Alu 1 296 -16 726 255 222 5 chr15 42442109 42442497 -43253257 - L1ME4a LINE L1 -183 5938 5467 1796 100 10 93 chr15 42442497 42442841 -43252913 + AluSx SINE Alu 2 319 0 1638 122 4 8 chr15 42442993 42443238 -43252516 - AluSx SINE Alu -63 249 6 2082 128 0 0 chr15 42443316 42443622 -43252132 - AluSx SINE Alu -2 310 5 2172 62 3 24 chr15 42444135 42444424 -43251330 - AluY SINE Alu -26 285 3 22 0 0 0 chr15 42444605 42444627 -43251127 + AT_rich Low_complexity Low_complexity 1 22 0 501 110 37 0 chr15 42444629 42444711 -43251043 + AluSg1 SINE Alu 3 87 -222 189 0 0 0 chr15 42444724 42444745 -43251009 + (TTCC)n Simple_repeat Simple_repeat 4 24 0 1766 65 10 55 chr15 42444876 42445186 -43250568 + AluY SINE Alu 5 300 -11 231 293 231 0 chr15 42445961 42446062 -43249692 + L1M4 LINE L1 3661 3737 -2409 4625 124 38 30 chr15 42446062 42446392 -43249362 + L1MA4 LINE L1 5461 5787 -513 1935 143 7 0 chr15 42446392 42446700 -43249054 + AluJb SINE Alu 1 310 -2 4625 124 38 30 chr15 42446700 42447202 -43248552 + L1MA4 LINE L1 5787 6300 0 231 293 231 0 chr15 42447202 42447407 -43248347 + L1M4 LINE L1 3737 4038 -2108 1494 144 30 15 chr15 42447420 42447690 -43248064 - L1MA5 LINE L1 0 6300 6027 3288 155 53 10 chr15 42447737 42448336 -43247418 + L1MB2 LINE L1 5540 6164 -7 1310 153 55 36 chr15 42448357 42448631 -43247123 + AluJo SINE Alu 1 279 -33 2077 110 0 16 chr15 42448831 42449139 -43246615 - AluSg SINE Alu -7 303 1 1936 145 0 0 chr15 42449447 42449737 -43246017 + AluSq SINE Alu 1 290 -23 865 206 0 0 chr15 42449792 42449957 -43245797 - FRAM SINE Alu -15 161 1 673 294 91 5 chr15 42450100 42450321 -43245433 - MIR SINE MIR -10 252 13 1919 125 24 0 chr15 42450750 42451046 -43244708 - AluSx SINE Alu -9 303 1 594 184 44 0 chr15 42451310 42451424 -43244330 + FLAM_A SINE Alu 13 131 -11 400 112 26 0 chr15 42451886 42451962 -43243792 + MER51A LTR ERV1 1 61 -579 4480 99 26 2 chr15 42451962 42452587 -43243167 + MER51C LTR ERV1 1 640 0 246 288 0 14 chr15 42453926 42453999 -43241755 - L2 LINE L2 -1 3271 3200 2193 79 7 3 chr15 42454626 42454930 -43240824 - AluSq SINE Alu -8 305 1 210 37 0 0 chr15 42455908 42455935 -43239819 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 194 91 30 0 chr15 42456351 42456384 -43239370 + (CA)n Simple_repeat Simple_repeat 2 35 0 288 266 127 0 chr15 42456430 42456509 -43239245 - MIR SINE MIR -115 147 59 2108 135 3 16 chr15 42457361 42457673 -43238081 - AluJb SINE Alu -4 308 1 2154 136 3 13 chr15 42457940 42458250 -43237504 - AluSx SINE Alu -4 308 2 636 219 67 49 chr15 42458967 42459079 -43236675 + MER5B DNA MER1_type 1 118 -60 2251 110 7 3 chr15 42459079 42459388 -43236366 - AluSq SINE Alu -3 310 1 636 219 67 49 chr15 42459388 42459439 -43236315 + MER5B DNA MER1_type 118 167 -11 188 354 35 42 chr15 42459477 42459621 -43236133 + L2 LINE L2 2246 2388 -926 1778 131 45 24 chr15 42459923 42460213 -43235541 - AluJb SINE Alu -16 296 1 659 284 12 12 chr15 42460907 42461076 -43234678 - MIR SINE MIR -60 202 34 817 217 165 29 chr15 42461356 42461738 -43234016 + L1MC4a LINE L1 5735 6168 -1640 2127 116 0 23 chr15 42461925 42462063 -43233691 + AluSq SINE Alu 1 141 -172 2469 87 0 3 chr15 42462063 42462375 -43233379 + AluY SINE Alu 1 311 0 2127 116 0 23 chr15 42462375 42462538 -43233216 + AluSq SINE Alu 141 295 -18 2384 92 3 0 chr15 42462546 42462838 -43232916 + AluSx SINE Alu 6 298 -14 2097 106 0 11 chr15 42463017 42463311 -43232443 - AluSq SINE Alu 0 306 16 461 62 15 0 chr15 42463454 42463519 -43232235 + (TTCC)n Simple_repeat Simple_repeat 1 66 0 1792 156 7 28 chr15 42463542 42463683 -43232071 - AluJb SINE Alu -36 276 141 2228 104 0 0 chr15 42463683 42463987 -43231767 - AluSx SINE Alu 0 308 5 1792 156 7 28 chr15 42463987 42464126 -43231628 - AluJb SINE Alu -171 141 1 396 260 96 0 chr15 42464927 42465031 -43230723 - MIR SINE MIR -59 203 90 2072 143 3 3 chr15 42465262 42465563 -43230191 + AluJb SINE Alu 1 301 -11 435 324 21 7 chr15 42465630 42465772 -43229982 - MIR SINE MIR -115 147 4 393 22 0 0 chr15 42465779 42465825 -43229929 + (TG)n Simple_repeat Simple_repeat 2 47 0 1366 194 8 4 chr15 42465826 42466068 -43229686 - AluJo SINE Alu -26 286 44 2046 117 13 3 chr15 42466490 42466789 -43228965 - AluSq SINE Alu -11 302 1 211 261 0 15 chr15 42467012 42467077 -43228677 + (TG)n Simple_repeat Simple_repeat 2 65 0 1199 197 36 136 chr15 42467838 42468011 -43227743 - L1MC4 LINE L1 0 8042 7853 216 97 0 0 chr15 42468011 42468042 -43227712 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1199 197 36 136 chr15 42468042 42468426 -43227328 - L1MC4 LINE L1 -189 7853 7541 2134 128 0 0 chr15 42468438 42468726 -43227028 + AluSx SINE Alu 1 288 -24 438 20 0 0 chr15 42468727 42468778 -43226976 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 338 268 188 45 chr15 42468788 42469012 -43226742 - L1ME LINE L1 -301 5820 5565 1820 127 29 52 chr15 42469217 42469397 -43226357 - AluJb SINE Alu 0 312 140 2302 112 3 13 chr15 42469397 42469710 -43226044 - AluSx SINE Alu -2 310 1 1820 127 29 52 chr15 42469710 42469837 -43225917 - AluJb SINE Alu -172 140 12 1919 171 0 0 chr15 42470265 42470574 -43225180 + AluJb SINE Alu 1 309 -3 1610 167 20 76 chr15 42470793 42471200 -43224554 + MER58D DNA MER1_type 3 386 0 501 286 102 10 chr15 42471455 42471661 -43224093 - MIR SINE MIR -17 245 21 205 262 229 0 chr15 42472184 42472306 -43223448 + MIR SINE MIR 28 177 -85 205 232 18 18 chr15 42473141 42473197 -43222557 + MER5B DNA MER1_type 105 160 -18 206 327 35 75 chr15 42473414 42473613 -43222141 + L2 LINE L2 2905 3095 -177 266 167 50 0 chr15 42473873 42473933 -43221821 - MIR3 SINE MIR -2 206 144 1613 179 4 11 chr15 42473997 42474270 -43221484 - AluJb SINE Alu -37 275 5 190 281 88 79 chr15 42475162 42475276 -43220478 + L2 LINE L2 3175 3289 -24 251 330 32 0 chr15 42475807 42475901 -43219853 + MIR SINE MIR 27 123 -85 203 329 0 14 chr15 42475894 42475967 -43219787 - MIR SINE MIR -117 91 20 * 419 247 44 77 chr15 42477092 42477274 -43218480 + L1ME4a LINE L1 5942 6117 -4 435 299 184 5 chr15 42477738 42477955 -43217799 - MIR SINE MIR 0 262 7 443 273 62 34 chr15 42479058 42479234 -43216520 - MIR SINE MIR -50 212 32 378 299 8 67 chr15 42479456 42479590 -43216164 - MIR SINE MIR -73 189 64 196 189 122 68 chr15 42479572 42479646 -43216108 - L2 LINE L2 0 3313 3236 * 669 78 52 0 chr15 42479902 42480017 -43215737 + CT-rich Low_complexity Low_complexity 3 123 0 1379 236 4 0 chr15 42480017 42480284 -43215470 - AluJo SINE Alu -44 268 1 394 287 138 18 chr15 42480293 42480460 -43215294 - MIR SINE MIR -74 188 2 1901 178 23 68 chr15 42480799 42481283 -43214471 - MLT1C LTR MaLR 0 467 6 2332 98 0 26 chr15 42481852 42482157 -43213597 - AluSx SINE Alu -15 297 1 386 321 36 36 chr15 42482288 42482456 -43213298 + MIR3 SINE MIR 32 199 -9 273 277 24 0 chr15 42483158 42483241 -43212513 + MIR3 SINE MIR 109 193 -15 305 261 112 39 chr15 42484035 42484295 -43211459 - L1MC4a LINE L1 -1797 6011 5733 303 275 43 0 chr15 42484333 42484402 -43211352 - L2 LINE L2 -18 3254 3183 1023 175 6 6 chr15 42485019 42485202 -43210552 - MER3 DNA MER1_type 0 209 27 1840 98 0 4 chr15 42485281 42485517 -43210237 - AluSq SINE Alu -78 235 1 190 286 181 38 chr15 42485518 42485651 -43210103 - MIR3 SINE MIR -42 166 15 1054 173 16 5 chr15 42486542 42486727 -43209027 - MER5A DNA MER1_type -2 187 1 235 319 119 32 chr15 42487140 42487325 -43208429 - L2 LINE L2 -218 3054 2854 246 303 40 13 chr15 42487566 42487642 -43208112 - L2 LINE L2 -5 3267 3190 352 318 128 6 chr15 42488341 42488520 -43207234 + MIR SINE MIR 33 233 -29 1879 186 38 9 chr15 42488655 42489078 -43206676 - L1MB8 LINE L1 -52 6126 5693 972 196 19 53 chr15 42489532 42489741 -43206013 + AluJo SINE Alu 1 202 -110 365 255 38 38 chr15 42490052 42490158 -43205596 + MIR SINE MIR 41 146 -62 1737 174 3 37 chr15 42490730 42491051 -43204703 - AluJo SINE Alu -2 310 1 1512 179 34 110 chr15 42492358 42492893 -43202861 + L1MC5 LINE L1 7181 7674 -287 2176 139 3 0 chr15 42492893 42493202 -43202552 + AluSx SINE Alu 1 310 -2 712 10 0 40 chr15 42493782 42493881 -43201873 + (CA)n Simple_repeat Simple_repeat 2 96 0 213 205 0 0 chr15 42493884 42493923 -43201831 + CT-rich Low_complexity Low_complexity 4 42 0 287 288 68 30 chr15 42494142 42494274 -43201480 - MIR SINE MIR -50 212 76 498 288 166 0 chr15 42494976 42495115 -43200639 - MER5A DNA MER1_type 0 189 28 2246 100 10 3 chr15 42495621 42495912 -43199842 + AluSx SINE Alu 1 293 -19 297 0 0 0 chr15 42496578 42496611 -43199143 + (TG)n Simple_repeat Simple_repeat 2 34 0 189 0 0 0 chr15 42496611 42496632 -43199122 + (TAG)n Simple_repeat Simple_repeat 2 22 0 1800 174 10 3 chr15 42496737 42497035 -43198719 + AluJo SINE Alu 4 303 -9 226 303 7 56 chr15 42497062 42497204 -43198550 + HAL1 LINE L1 2368 2502 -5 280 202 202 32 chr15 42497270 42497394 -43198360 + MIR3 SINE MIR 21 165 -43 292 328 84 15 chr15 42498658 42498789 -43196965 - MIR SINE MIR -12 250 111 310 302 191 33 chr15 42498797 42499012 -43196742 - MIR SINE MIR -1 261 13 2226 115 0 10 chr15 42499167 42499471 -43196283 + AluSx SINE Alu 1 301 -11 193 273 18 0 chr15 42500017 42500072 -43195682 + MIR SINE MIR 90 145 -63 322 224 0 129 chr15 42500270 42500325 -43195429 - MER5B DNA MER1_type -73 105 71 1654 184 3 34 chr15 42500325 42500646 -43195108 - AluJo SINE Alu -1 311 1 322 224 0 129 chr15 42500646 42500706 -43195048 - MER5B DNA MER1_type -107 71 5 274 169 0 19 chr15 42501458 42501520 -43194234 + AluYa8 SINE Alu 127 170 -130 621 194 0 0 chr15 42501520 42501623 -43194131 + AluJb SINE Alu 205 307 -5 666 291 33 33 chr15 42501624 42501908 -43193846 + L1ME4a LINE L1 5664 5950 -171 2533 80 0 0 chr15 42501908 42502219 -43193535 + AluSx SINE Alu 1 311 -1 666 291 33 33 chr15 42502219 42502323 -43193431 + L1ME4a LINE L1 5949 6052 -69 522 0 0 0 chr15 42502329 42502387 -43193367 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 257 327 84 0 chr15 42502535 42502642 -43193112 - L2 LINE L2 -2 3270 3155 284 223 138 62 chr15 42502966 42503096 -43192658 - MIR3 SINE MIR -10 198 59 218 160 20 0 chr15 42504408 42504458 -43191296 + (TGGG)n Simple_repeat Simple_repeat 2 52 0 1811 147 49 3 chr15 42506355 42506640 -43189114 - AluSx SINE Alu -14 298 1 334 205 24 24 chr15 42506724 42506807 -43188947 + MER97a DNA MER1_type? 14 96 -798 463 151 14 0 chr15 42506808 42506881 -43188873 + AluS SINE Alu 2 75 -238 1470 167 68 64 chr15 42509011 42509139 -43186615 + AluJo SINE Alu 1 127 -185 2329 94 3 0 chr15 42509139 42509436 -43186318 - AluSq SINE Alu -15 298 1 1470 167 68 64 chr15 42509436 42509618 -43186136 + AluJo SINE Alu 127 312 0 2403 103 0 3 chr15 42509618 42509928 -43185826 + AluSq SINE Alu 1 309 -4 2113 125 0 19 chr15 42509930 42510243 -43185511 + AluSq SINE Alu 1 307 -6 2361 82 17 3 chr15 42511183 42511477 -43184277 + AluSx SINE Alu 1 298 -14 383 286 161 10 chr15 42511808 42512007 -43183747 + MIR SINE MIR 34 262 0 544 241 185 10 chr15 42512413 42512608 -43183146 + MIR SINE MIR 14 242 -20 23 0 0 0 chr15 42515046 42515069 -43180685 + AT_rich Low_complexity Low_complexity 1 23 0 776 153 23 15 chr15 42515354 42515485 -43180269 - FLAM_C SINE Alu 0 133 2 890 112 0 0 chr15 42515489 42515614 -43180140 - AluSp/q SINE Alu -4 309 185 2320 88 0 3 chr15 42515616 42515912 -43179842 + AluSg SINE Alu 1 295 -15 472 277 66 15 chr15 42515920 42516057 -43179697 + MIR SINE MIR 48 191 -71 1553 144 134 25 chr15 42516094 42516371 -43179383 - AluJb SINE Alu -5 307 1 392 267 95 70 chr15 42516372 42516499 -43179255 - L1ME4a LINE L1 -276 5845 5723 1949 111 52 0 chr15 42516499 42516813 -43178941 - AluSq SINE Alu 0 328 1 392 267 95 70 chr15 42516813 42516834 -43178920 - L1ME4a LINE L1 -398 5723 5704 2313 109 3 0 chr15 42516834 42517136 -43178618 - AluSp SINE Alu -10 303 1 392 267 95 70 chr15 42517136 42517270 -43178484 - L1ME4a LINE L1 -417 5704 5554 608 159 0 0 chr15 42517317 42517405 -43178349 + AluJ/FLAM SINE Alu 2 89 -223 2012 141 3 3 chr15 42517638 42517963 -43177791 - AluSx SINE Alu 0 312 1 272 292 142 26 chr15 42518279 42518392 -43177362 + MIR SINE MIR 32 157 -105 29 70 0 0 chr15 42518392 42518449 -43177305 + AT_rich Low_complexity Low_complexity 1 57 0 547 223 51 126 chr15 42518452 42518557 -43177197 - MIR SINE MIR -15 247 162 940 100 0 0 chr15 42518557 42518703 -43177051 - FLAM_C SINE Alu 0 147 2 547 223 51 126 chr15 42518703 42518810 -43176944 - MIR SINE MIR -100 162 49 2274 122 3 0 chr15 42519096 42519400 -43176354 + AluSx SINE Alu 1 305 -7 2359 96 3 7 chr15 42519785 42520088 -43175666 + AluSx SINE Alu 1 302 -10 396 299 91 26 chr15 42520113 42520325 -43175429 + MIR SINE MIR 1 223 -37 496 82 0 14 chr15 42520561 42520634 -43175120 - L1MB8 LINE L1 -6 6172 6101 2296 161 83 4 chr15 42520636 42520926 -43174828 - L1M4 LINE L1 -408 5770 5504 2299 97 7 3 chr15 42520926 42521224 -43174530 - AluSg SINE Alu -11 299 1 2090 122 7 7 chr15 42521224 42521520 -43174234 - AluSx SINE Alu -16 296 1 2296 161 83 4 chr15 42521520 42521862 -43173892 - L1M4 LINE L1 -673 5505 5088 1674 163 64 11 chr15 42522083 42522366 -43173388 - AluJb SINE Alu -14 298 1 32 26 0 0 chr15 42522452 42522491 -43173263 + AT_rich Low_complexity Low_complexity 1 39 0 1780 191 10 3 chr15 42522565 42522864 -43172890 - AluJo SINE Alu -11 301 1 2236 128 0 3 chr15 42522964 42523270 -43172484 - AluSx SINE Alu -7 305 1 2091 181 81 57 chr15 42523461 42524123 -43171631 - L1MD3 LINE L1 -10 8002 7359 387 179 105 0 chr15 42524104 42524199 -43171555 - L1MC5 LINE L1 -853 7108 7004 * 2053 82 52 0 chr15 42524296 42524592 -43171162 - AluY SINE Alu 0 310 1 1491 174 71 0 chr15 42524617 42524899 -43170855 + AluJb SINE Alu 1 302 -10 281 229 0 0 chr15 42524899 42524953 -43170801 + L3 LINE CR1 1518 1574 -3 2263 84 16 42 chr15 42525665 42525973 -43169781 + AluSx SINE Alu 2 301 -11 334 231 250 9 chr15 42527204 42527312 -43168442 - L2 LINE L2 -5 3308 3175 250 288 63 78 chr15 42527541 42527716 -43168038 + L1ME LINE L1 5332 5503 -618 1681 137 49 53 chr15 42527716 42528026 -43167728 + AluJo SINE Alu 3 311 0 250 288 63 78 chr15 42528026 42528181 -43167573 + L1ME LINE L1 5503 5659 -462 1434 228 16 3 chr15 42529391 42529698 -43166056 + MLT1F LTR MaLR 11 321 -221 225 319 87 0 chr15 42529735 42529804 -43165950 - L2 LINE L2 -42 3230 3156 327 345 72 29 chr15 42530009 42530218 -43165536 - LTR67 LTR ERVL -258 299 82 1570 194 52 3 chr15 42530412 42530737 -43165017 - MER58B DNA MER1_type 0 341 1 2860 110 55 11 chr15 42530995 42531449 -43164305 - MER39 LTR ERV1 0 707 234 1374 153 8 34 chr15 42531449 42531684 -43164070 - AluJb SINE Alu 0 312 84 1132 165 67 0 chr15 42531684 42531908 -43163846 - MER39 LTR ERV1 -465 242 4 964 193 0 0 chr15 42531923 42532094 -43163660 - FRAM SINE Alu -13 163 1 2299 105 7 0 chr15 42532154 42532458 -43163296 + AluSg1 SINE Alu 1 306 -3 1753 171 42 0 chr15 42532723 42533009 -43162745 - AluJo SINE Alu -14 298 1 1158 239 0 12 chr15 42533268 42533515 -43162239 + MIR SINE MIR 14 257 -5 1775 160 4 0 chr15 42533526 42533801 -43161953 + AluJo SINE Alu 1 276 -36 2127 126 0 0 chr15 42534090 42534383 -43161371 - AluY SINE Alu -18 293 1 391 279 76 6 chr15 42534397 42534555 -43161199 - L1ME LINE L1 -477 5644 5476 957 171 6 6 chr15 42534631 42534789 -43160965 - FRAM SINE Alu -8 158 1 1809 140 0 32 chr15 42534997 42535276 -43160478 - AluJo SINE Alu -16 296 27 1267 127 11 0 chr15 42535282 42535471 -43160283 - AluSg/x SINE Alu -1 309 119 1309 169 119 0 chr15 42535671 42535890 -43159864 - AluJo SINE Alu -57 255 11 461 308 65 33 chr15 42535901 42536115 -43159639 - L1ME LINE L1 -939 5207 4987 260 252 218 8 chr15 42536317 42536583 -43159171 + L1ME4a LINE L1 5694 6015 -106 1728 182 7 3 chr15 42536678 42536974 -43158780 + AluJo SINE Alu 2 298 -14 22 0 0 0 chr15 42537008 42537030 -43158724 + AT_rich Low_complexity Low_complexity 1 22 0 491 266 65 19 chr15 42537311 42537465 -43158289 + MIR3 SINE MIR 27 187 -21 336 24 0 0 chr15 42537648 42537689 -43158065 + (TG)n Simple_repeat Simple_repeat 2 42 0 1663 112 0 5 chr15 42537705 42537929 -43157825 - AluSg SINE Alu -87 223 1 341 307 0 26 chr15 42538266 42538380 -43157374 - MIR3 SINE MIR -48 160 50 251 261 29 14 chr15 42538399 42538468 -43157286 + MIR SINE MIR 42 111 -97 587 110 0 147 chr15 42539089 42539225 -43156529 + MLT1A1 LTR MaLR 1 116 -249 1463 159 17 0 chr15 42539249 42539482 -43156272 - AluJo SINE Alu -21 291 55 6635 121 214 45 chr15 42539485 42540936 -43154818 - pTR5 LTR ERV1 0 2438 743 336 172 0 0 chr15 42540936 42540994 -43154760 - AluJo SINE Alu -244 58 1 1563 144 20 0 chr15 42540994 42541244 -43154510 + MLT1A1 LTR MaLR 111 365 0 2356 112 0 0 chr15 42541308 42541620 -43154134 - AluSx SINE Alu 0 312 1 875 157 0 21 chr15 42541655 42541795 -43153959 - FLAM_C SINE Alu -6 137 1 237 200 0 33 chr15 42541809 42541869 -43153885 - LTR49 LTR ERV1 -79 516 459 2631 231 73 79 chr15 42541883 42541908 -43153846 - L1MC4 LINE L1 -1 8041 8017 2243 110 0 0 chr15 42541908 42542198 -43153556 + AluSg1 SINE Alu 1 290 -19 2631 231 73 79 chr15 42542198 42542406 -43153348 - L1MC4 LINE L1 -25 8017 7809 2220 141 0 0 chr15 42542406 42542718 -43153036 + AluSx SINE Alu 1 312 0 2631 231 73 79 chr15 42542718 42543261 -43152493 - L1MC4 LINE L1 -233 7809 7264 2295 112 3 3 chr15 42543261 42543566 -43152188 - AluSx SINE Alu -7 305 1 2631 231 73 79 chr15 42543566 42543734 -43152020 - L1MC4 LINE L1 -778 7264 7097 1749 191 6 16 chr15 42543734 42544049 -43151705 - AluJo SINE Alu 0 312 1 2631 231 73 79 chr15 42544049 42544090 -43151664 - L1MC4 LINE L1 -945 7097 7057 2427 101 0 9 chr15 42544090 42544406 -43151348 - AluSq SINE Alu 0 313 1 2631 231 73 79 chr15 42544406 42544644 -43151110 - L1MC4 LINE L1 -985 7057 6821 1090 147 12 0 chr15 42544664 42544827 -43150927 - AluSg/x SINE Alu -13 299 135 335 227 82 41 chr15 42544867 42544964 -43150790 - HAL1b LINE L1 -500 848 748 237 339 161 0 chr15 42545079 42545209 -43150545 - MER5A DNA MER1_type -3 186 36 323 309 94 35 chr15 42545339 42545540 -43150214 - L1MDa LINE L1 -4436 2104 1892 512 146 0 11 chr15 42545598 42545687 -43150067 - FLAM_C SINE Alu -2 141 54 751 289 84 59 chr15 42545701 42546023 -43149731 - HAL1 LINE L1 -1071 1436 1107 21 0 0 0 chr15 42546023 42546044 -43149710 + AT_rich Low_complexity Low_complexity 1 21 0 1836 177 0 17 chr15 42546044 42546338 -43149416 - AluJb SINE Alu -23 289 1 285 214 286 0 chr15 42546850 42546948 -43148806 + MIR SINE MIR 28 153 -109 2365 92 0 10 chr15 42547016 42547320 -43148434 - AluSx SINE Alu -11 301 1 1418 217 118 32 chr15 42547548 42547638 -43148116 - HAL1 LINE L1 -167 2340 2259 2147 92 17 24 chr15 42547638 42547932 -43147822 - AluSg SINE Alu -18 292 1 1418 217 118 32 chr15 42547932 42548366 -43147388 - HAL1 LINE L1 -248 2259 1771 1249 148 114 25 chr15 42548721 42548958 -43146796 - AluJo SINE Alu -21 291 34 233 259 68 61 chr15 42549101 42549248 -43146506 + MIR SINE MIR 109 256 -6 271 300 138 8 chr15 42549952 42550082 -43145672 + L2 LINE L2 3125 3271 -1 198 118 0 0 chr15 42550244 42550278 -43145476 + (TC)n Simple_repeat Simple_repeat 1 34 0 297 222 42 0 chr15 42550343 42550415 -43145339 - MIR SINE MIR -79 183 109 696 240 54 50 chr15 42551442 42551700 -43144054 - MIR SINE MIR 0 262 4 665 215 41 58 chr15 42552029 42552201 -43143553 - MER5B DNA MER1_type -3 175 7 375 268 54 2 chr15 42552254 42552387 -43143367 + MIR SINE MIR 16 154 -62 277 237 79 53 chr15 42552418 42552494 -43143260 - L2 LINE L2 -21 3251 3174 649 221 87 23 chr15 42553204 42553376 -43142378 + MIR3 SINE MIR 1 183 -25 1127 247 99 0 chr15 42553492 42553775 -43141979 + MLT1G LTR MaLR 278 588 -2 260 300 147 47 chr15 42554102 42554272 -43141482 - MIR SINE MIR -47 215 29 203 243 129 0 chr15 42554839 42554909 -43140845 - MIR SINE MIR -123 139 61 265 27 82 27 chr15 42555215 42555288 -43140466 + (CCGCG)n Simple_repeat Simple_repeat 4 80 0 259 289 53 0 chr15 42555936 42556012 -43139742 - MIR SINE MIR -76 186 107 190 274 0 0 chr15 42556556 42556607 -43139147 + MIR SINE MIR 82 132 -130 324 260 26 13 chr15 42557041 42557118 -43138636 + MIR3 SINE MIR 82 159 -49 228 315 130 9 chr15 42557696 42557804 -43137950 - L2 LINE L2 -10 3262 3142 1530 223 79 25 chr15 42557925 42558474 -43137280 - L1ME3A LINE L1 -86 6084 5478 263 231 0 62 chr15 42558528 42558593 -43137161 - MIR SINE MIR -181 81 21 232 271 21 42 chr15 42559458 42559554 -43136200 - MIR SINE MIR -94 168 75 406 170 107 45 chr15 42560273 42560385 -43135369 - MIR SINE MIR -63 145 27 329 312 160 16 chr15 42560558 42560683 -43135071 - MIR SINE MIR -96 166 24 1961 103 55 10 chr15 42560683 42560974 -43134780 - AluSx SINE Alu -8 304 1 1145 123 5 11 chr15 42562196 42562383 -43133371 + AluSg/x SINE Alu 118 303 -9 418 259 41 13 chr15 42562943 42563112 -43132642 - MIR SINE MIR -62 146 30 187 138 0 0 chr15 42563979 42564008 -43131746 + MIR SINE MIR 122 150 -112 683 256 56 0 chr15 42564025 42564185 -43131569 + MER5B DNA MER1_type 10 178 0 1026 142 0 6 chr15 42564295 42564457 -43131297 + FRAM SINE Alu 1 161 -5 190 278 144 11 chr15 42564570 42564660 -43131094 - MIR SINE MIR -57 205 104 206 333 18 53 chr15 42565178 42565292 -43130462 + MIR SINE MIR 23 132 -76 265 259 129 35 chr15 42565712 42565828 -43129926 + L2 LINE L2 3182 3308 -5 349 240 31 31 chr15 42566558 42566654 -43129100 + MIR SINE MIR 45 140 -122 292 268 79 47 chr15 42566803 42566930 -43128824 + MIR SINE MIR 39 169 -93 228 357 36 0 chr15 42567856 42567968 -43127786 - MIR SINE MIR 0 262 147 565 281 68 0 chr15 42568015 42568161 -43127593 - MIR SINE MIR -67 195 40 2221 99 10 0 chr15 42568397 42568700 -43127054 + AluSg SINE Alu 1 306 -4 326 168 36 0 chr15 42568768 42568834 -43126920 + MIR SINE MIR 77 140 -68 2396 143 42 42 chr15 42569515 42569842 -43125912 - MSTC LTR MaLR 0 428 99 2220 102 0 0 chr15 42569842 42570136 -43125618 - AluSx SINE Alu -14 298 5 2396 143 42 42 chr15 42570136 42570236 -43125518 - MSTC LTR MaLR -328 100 1 230 280 120 33 chr15 42570365 42570515 -43125239 - L1P1 LINE L1 -500 5655 5493 1898 144 3 10 chr15 42571004 42571317 -43124437 - AluSx SINE Alu -1 311 1 594 197 17 20 chr15 42573055 42573204 -43122550 + MIR SINE MIR 2 147 -62 501 215 70 13 chr15 42573842 42574000 -43121754 - L1MC5 LINE L1 -466 7495 7329 662 98 15 2 chr15 42574017 42574219 -43121535 - Charlie5 DNA MER1_type -29 2583 2332 1591 143 72 0 chr15 42574221 42574511 -43121243 - AluJb SINE Alu 0 309 1 1276 139 6 0 chr15 42574533 42574784 -43120970 - Charlie5 DNA MER1_type -2491 121 1 2058 133 17 0 chr15 42575054 42575356 -43120398 + AluSx SINE Alu 1 307 -5 794 261 135 0 chr15 42575370 42575600 -43120154 + MIR SINE MIR 2 262 0 359 282 0 29 chr15 42575614 42575717 -43120037 - MER5A DNA MER1_type -47 142 43 5028 141 43 25 chr15 42575839 42576726 -43119028 + MER4D LTR ERV1 1 903 0 341 347 90 30 chr15 42576997 42577164 -43118590 - MIR3 SINE MIR -29 179 3 2184 184 97 16 chr15 42577186 42577621 -43118133 - MLT-int LTR MaLR 0 1735 1266 234 165 0 127 chr15 42577650 42577729 -43118025 - MLT-int LTR MaLR -695 1040 972 803 190 36 82 chr15 42577829 42578024 -43117730 - MLT-int LTR MaLR -907 828 643 * 3580 177 38 20 chr15 42578022 42578705 -43117049 - MLT1A1-int LTR MaLR -1040 695 1 1850 164 80 15 chr15 42578708 42579044 -43116710 - MLT1A1 LTR MaLR -2 363 6 415 304 56 78 chr15 42580295 42580601 -43115153 - L2 LINE L2 -31 3241 2943 363 263 140 42 chr15 42580664 42580900 -43114854 - L2 LINE L2 -460 2854 2596 1843 140 10 7 chr15 42581191 42581491 -43114263 - AluJb SINE Alu -11 301 1 1697 171 0 16 chr15 42581502 42581811 -43113943 - AluJb SINE Alu -8 304 1 2137 106 0 17 chr15 42583242 42583544 -43112210 - AluSx SINE Alu -15 297 1 24729 108 26 13 chr15 42583588 42583738 -43112016 + L1MA3 LINE L1 16 163 -7402 2275 87 3 3 chr15 42583738 42584049 -43111705 - AluY SINE Alu 0 311 1 24729 108 26 13 chr15 42584049 42587469 -43108285 + L1MA3 LINE L1 163 3632 -3933 41550 67 8 2 chr15 42587478 42593591 -43102163 + L1PA5 LINE L1 5 6154 0 8314 174 71 38 chr15 42593588 42594061 -43101693 + L1MA3 LINE L1 3621 4077 -3647 * 2251 91 0 3 chr15 42594061 42594357 -43101397 + AluY SINE Alu 1 295 -16 8314 174 71 38 chr15 42594357 42595080 -43100674 + L1MA3 LINE L1 4077 4775 -2949 1761 160 3 0 chr15 42595080 42595367 -43100387 + AluJb SINE Alu 1 288 -24 8314 174 71 38 chr15 42595367 42597664 -43098090 + L1MA3 LINE L1 4775 7415 -309 2109 94 20 0 chr15 42597664 42597956 -43097798 + L1PB1 LINE L1 5844 6148 -3 1958 110 27 34 chr15 42597960 42598288 -43097466 + L1MA3 LINE L1 7399 7724 0 2127 114 0 0 chr15 42598692 42598990 -43096764 - AluSx SINE Alu -14 298 1 207 162 0 0 chr15 42599076 42599113 -43096641 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 182 355 164 27 chr15 42599202 42599312 -43096442 - L2 LINE L2 -4 3268 3144 575 212 106 20 chr15 42600085 42600236 -43095518 - MIR SINE MIR -56 206 43 29 0 0 0 chr15 42600343 42600372 -43095382 + AT_rich Low_complexity Low_complexity 1 29 0 1669 157 20 27 chr15 42600431 42600724 -43095030 + AluJo SINE Alu 1 291 -21 22 35 0 0 chr15 42600758 42600787 -43094967 + AT_rich Low_complexity Low_complexity 1 29 0 377 260 39 1 chr15 42601096 42601209 -43094545 - MIR SINE MIR -57 151 40 431 201 119 124 chr15 42601954 42602148 -43093606 + MIR SINE MIR 13 205 -57 2151 128 133 13 chr15 42602310 42602649 -43093105 + MSTA LTR MaLR 1 392 -36 2062 126 0 10 chr15 42602649 42602959 -43092795 - AluSx SINE Alu -1 311 5 2151 128 133 13 chr15 42602959 42603001 -43092753 + MSTA LTR MaLR 392 428 0 724 224 87 31 chr15 42603260 42603456 -43092298 - MIR SINE MIR -53 209 3 253 283 100 42 chr15 42603509 42603629 -43092125 - L2 LINE L2 -1 3312 3186 329 200 200 0 chr15 42604239 42604334 -43091420 + MIR3 SINE MIR 78 191 -17 433 256 77 19 chr15 42604422 42604578 -43091176 - MIR SINE MIR -52 210 46 366 291 115 6 chr15 42605171 42605336 -43090418 - MIR3 SINE MIR -22 186 4 574 178 0 0 chr15 42605794 42605884 -43089870 + FLAM_A SINE Alu 10 99 -43 432 278 125 17 chr15 42606263 42606439 -43089315 + MIR SINE MIR 61 255 -7 2087 117 0 13 chr15 42607051 42607359 -43088395 - AluSx SINE Alu -8 304 1 190 353 76 50 chr15 42607409 42607503 -43088251 + MIR SINE MIR 7 97 -165 1758 164 7 13 chr15 42607503 42607808 -43087946 - AluJo SINE Alu -9 303 1 190 353 76 50 chr15 42607808 42607951 -43087803 + MIR SINE MIR 97 250 -12 309 292 120 62 chr15 42607972 42608263 -43087491 - L2 LINE L2 -17 3255 2948 2065 129 0 3 chr15 42608370 42608681 -43087073 - AluSx SINE Alu -2 310 1 22 0 0 0 chr15 42609299 42609321 -43086433 + AT_rich Low_complexity Low_complexity 1 22 0 190 336 55 39 chr15 42609728 42609856 -43085898 - L2 LINE L2 -249 3023 2894 1358 171 145 111 chr15 42609883 42610194 -43085560 - L1MB8 LINE L1 0 6178 5840 2250 111 0 3 chr15 42610194 42610520 -43085234 - AluSx SINE Alu 0 312 2 1358 171 145 111 chr15 42610520 42610740 -43085014 - L1MB8 LINE L1 -338 5840 5629 204 250 19 0 chr15 42611231 42611283 -43084471 - MIR SINE MIR -95 167 115 195 204 0 0 chr15 42611535 42611579 -43084175 + T-rich Low_complexity Low_complexity 1 44 0 405 325 180 10 chr15 42612560 42612766 -43082988 - MIR SINE MIR -21 241 1 188 215 31 15 chr15 42612773 42612838 -43082916 - L2 LINE L2 -88 3225 3160 190 216 137 0 chr15 42613004 42613055 -43082699 - MIR SINE MIR -103 105 48 432 225 38 2 chr15 42613559 42613708 -43082046 + MER63A DNA MER1_type 1 188 -22 1973 162 3 0 chr15 42613949 42614251 -43081503 - AluJo SINE Alu -9 303 1 2239 102 10 0 chr15 42614322 42614616 -43081138 - AluSx SINE Alu -10 302 6 661 245 67 100 chr15 42614787 42615559 -43080195 + L1MEd LINE L1 761 1558 -4752 2242 132 0 0 chr15 42615559 42615863 -43079891 + AluSx SINE Alu 1 304 -8 661 245 67 100 chr15 42615863 42615886 -43079868 + L1MEd LINE L1 1558 1580 -4730 1896 159 7 7 chr15 42616090 42616391 -43079363 + AluSx SINE Alu 1 301 -11 2467 92 3 0 chr15 42616393 42616699 -43079055 + AluSx SINE Alu 1 307 -5 1920 154 17 3 chr15 42617054 42617352 -43078402 + AluJo SINE Alu 1 302 -10 465 199 49 53 chr15 42617352 42617406 -43078348 - MER5C DNA MER1_type -56 268 215 2376 104 3 0 chr15 42617406 42617715 -43078039 + AluSq SINE Alu 1 310 -3 465 199 49 53 chr15 42617715 42617869 -43077885 - MER5C DNA MER1_type -109 215 1 306 333 40 27 chr15 42617870 42618167 -43077587 + L1ME3A LINE L1 5650 5950 -220 30 0 0 0 chr15 42618388 42618418 -43077336 + AT_rich Low_complexity Low_complexity 1 30 0 2314 113 7 3 chr15 42618454 42618764 -43076990 - AluSp SINE Alu -2 311 1 2143 131 0 7 chr15 42618764 42619061 -43076693 - AluSx SINE Alu -13 299 5 204 205 0 0 chr15 42619524 42619563 -43076191 + CT-rich Low_complexity Low_complexity 4 42 0 1721 214 8 27 chr15 42619644 42619858 -43075896 - MLT1A1 LTR MaLR -2 363 157 1856 169 3 19 chr15 42619858 42620171 -43075583 - AluJb SINE Alu -4 308 1 1721 214 8 27 chr15 42620171 42620326 -43075428 - MLT1A1 LTR MaLR -208 157 1 200 289 26 13 chr15 42620866 42620942 -43074812 - L2 LINE L2 -2 3311 3235 455 286 76 32 chr15 42620996 42621181 -43074573 - MIR SINE MIR -48 214 22 2321 102 7 0 chr15 42621733 42622027 -43073727 - AluSg SINE Alu -14 296 1 203 182 39 65 chr15 42622085 42622162 -43073592 + CT-rich Low_complexity Low_complexity 3 77 0 420 322 40 11 chr15 42622238 42622415 -43073339 + MIR SINE MIR 50 231 -31 575 213 97 13 chr15 42622670 42622825 -43072929 + MER5B DNA MER1_type 8 175 -3 1739 125 29 53 chr15 42622923 42623204 -43072550 + AluJo SINE Alu 24 297 -15 266 278 112 35 chr15 42623245 42623414 -43072340 - L2 LINE L2 -2 3270 3089 673 220 108 46 chr15 42623741 42623982 -43071772 - MIR SINE MIR 0 262 7 236 378 56 14 chr15 42623979 42624122 -43071632 - L2 LINE L2 -731 2583 2435 * 396 0 0 0 chr15 42625226 42625270 -43070484 + (TG)n Simple_repeat Simple_repeat 1 44 0 238 216 0 0 chr15 42625508 42625559 -43070195 - MER115 DNA AcHobo -490 203 153 881 138 0 23 chr15 42626963 42627093 -43068661 + FLAM_C SINE Alu 1 127 -16 204 254 16 139 chr15 42628738 42628860 -43066894 - MIR SINE MIR -65 197 91 247 207 153 51 chr15 42629517 42629667 -43066087 - MIR SINE MIR -36 172 16 296 323 15 38 chr15 42629729 42629862 -43065892 - L2 LINE L2 0 3272 3143 287 235 15 0 chr15 42630401 42630469 -43065285 - HsTC2 DNA Tc2 -3 1895 1827 447 297 56 53 chr15 42630530 42630796 -43064958 + L1MEd LINE L1 357 623 -5496 343 263 105 0 chr15 42630816 42630911 -43064843 - HsTC2 DNA Tc2 -1793 105 1 2273 107 0 29 chr15 42631163 42631473 -43064281 + AluSx SINE Alu 1 301 -11 2042 118 4 7 chr15 42632107 42632387 -43063367 - AluSx SINE Alu -33 279 1 747 280 47 42 chr15 42633354 42633556 -43062198 - L1MC5 LINE L1 -47 7914 7714 2519 105 0 0 chr15 42633556 42633869 -43061885 - AluSq SINE Alu 0 313 1 747 280 47 42 chr15 42633869 42634070 -43061684 - L1MC5 LINE L1 -247 7714 7509 1259 142 5 9 chr15 42635791 42636002 -43059752 - MER2 DNA MER2_type -135 210 1 506 285 196 6 chr15 42636071 42636385 -43059369 - L2 LINE L2 -221 3092 2714 223 270 0 16 chr15 42636544 42636607 -43059147 + CT-rich Low_complexity Low_complexity 4 65 0 1996 164 17 30 chr15 42637580 42637983 -43057771 - L1MB7 LINE L1 -19 6165 5768 477 170 170 22 chr15 42638076 42638211 -43057543 - MIR SINE MIR 0 262 108 197 308 0 0 chr15 42638205 42638257 -43057497 - L2 LINE L2 -213 3059 3008 * 633 227 73 0 chr15 42639517 42639667 -43056087 + MIR SINE MIR 1 161 -101 2455 96 3 0 chr15 42639701 42640013 -43055741 - AluSp SINE Alu 0 313 1 1570 192 0 55 chr15 42640093 42640401 -43055353 + AluJo SINE Alu 1 291 -21 2232 115 0 0 chr15 42641135 42641431 -43054323 - AluSx SINE Alu -16 296 1 1736 180 3 3 chr15 42643230 42643525 -43052229 + AluJb SINE Alu 1 295 -17 1886 169 50 21 chr15 42643580 42643959 -43051795 + MLT1B LTR MaLR 1 390 0 418 271 58 39 chr15 42644776 42644931 -43050823 - MIR3 SINE MIR -39 169 12 370 293 28 0 chr15 42645152 42645258 -43050496 - L2 LINE L2 -12 3301 3193 351 344 81 11 chr15 42646617 42646803 -43048951 - MIR SINE MIR -51 211 13 198 0 0 0 chr15 42646933 42646955 -43048799 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2015 120 14 3 chr15 42646955 42647238 -43048516 - AluSq SINE Alu -27 286 1 2191 95 0 3 chr15 42647669 42648006 -43047748 - AluSc SINE Alu 0 336 1 376 250 66 22 chr15 42648360 42648496 -43047258 + MIR SINE MIR 36 177 -85 1443 191 163 39 chr15 42648649 42649190 -43046564 - LTR48 LTR ERV1 -49 595 31 2225 97 21 0 chr15 42649526 42649815 -43045939 - AluY SINE Alu -16 295 1 2039 155 10 45 chr15 42649945 42650346 -43045408 - MLT1B LTR MaLR 0 390 4 1226 101 0 0 chr15 42650652 42650811 -43044943 + AluSg/x SINE Alu 140 298 -12 2392 119 0 0 chr15 42650979 42651290 -43044464 + AluSq SINE Alu 1 311 -2 222 128 0 0 chr15 42651644 42651683 -43044071 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 913 261 32 84 chr15 42652062 42652442 -43043312 + LTR16B LTR ERVL 105 464 0 679 188 143 13 chr15 42652553 42652707 -43043047 + FAM SINE Alu 1 174 -1 2275 102 3 0 chr15 42652773 42653066 -43042688 + AluSq SINE Alu 1 294 -19 423 0 0 0 chr15 42653484 42653531 -43042223 + (TG)n Simple_repeat Simple_repeat 2 48 0 203 244 9 0 chr15 42653601 42653716 -43042038 + (TG)n Simple_repeat Simple_repeat 2 117 0 216 170 0 0 chr15 42653779 42653832 -43041922 + (TG)n Simple_repeat Simple_repeat 2 54 0 404 272 34 41 chr15 42655212 42655359 -43040395 - L3 LINE CR1 -131 1446 1301 210 291 82 0 chr15 42655490 42655624 -43040130 - L2 LINE L2 -214 3058 2914 757 161 136 7 chr15 42655790 42655945 -43039809 + MER5A DNA MER1_type 1 175 -14 582 193 9 9 chr15 42656093 42656202 -43039552 + MER81 DNA DNA 5 113 -1 689 144 8 8 chr15 42657228 42657346 -43038408 + FRAM SINE Alu 49 166 -10 449 266 79 54 chr15 42657407 42657609 -43038145 + MIR SINE MIR 3 207 -55 442 282 116 28 chr15 42658095 42658311 -43037443 - MIR SINE MIR -23 239 5 351 288 27 0 chr15 42658302 42658413 -43037341 + MIR SINE MIR 27 140 -68 * 407 252 106 8 chr15 42659365 42659488 -43036266 - MIR SINE MIR -108 154 20 1785 149 7 28 chr15 42660032 42660316 -43035438 + AluSx SINE Alu 6 281 -31 220 36 0 0 chr15 42660316 42660344 -43035410 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 1688 225 113 10 chr15 42661039 42661559 -43034195 - L1MC4a LINE L1 -1896 5912 5339 374 324 62 17 chr15 42661602 42661781 -43033973 + L1M4 LINE L1 5091 5277 -869 426 258 89 0 chr15 42661856 42661980 -43033774 - MIR SINE MIR -67 195 61 218 319 75 0 chr15 42662004 42662098 -43033656 + MIR SINE MIR 44 144 -118 1660 184 15 12 chr15 42663416 42663753 -43032001 + L1MB8 LINE L1 5840 6177 -1 2545 70 0 6 chr15 42663764 42664077 -43031677 + AluY SINE Alu 1 311 0 333 54 0 0 chr15 42664421 42664477 -43031277 + L1MB4 LINE L1 6125 6180 0 289 311 101 0 chr15 42664547 42664666 -43031088 - MIR SINE MIR 0 262 132 1123 198 127 19 chr15 42664909 42665177 -43030577 + AluSg SINE Alu 6 302 -8 518 335 39 26 chr15 42666629 42666862 -43028892 + MIR SINE MIR 21 256 -6 480 261 128 20 chr15 42667417 42667620 -43028134 - L1ME4a LINE L1 -2 6119 5895 1771 80 0 40 chr15 42667629 42667880 -43027874 - AluSg/x SINE Alu 0 310 70 318 106 0 0 chr15 42668416 42668463 -43027291 + (GGAA)n Simple_repeat Simple_repeat 4 50 0 2673 182 161 11 chr15 42668488 42669103 -43026651 + MER39 LTR ERV1 1 707 0 359 321 26 5 chr15 42669200 42669321 -43026433 - MIR SINE MIR -58 150 33 772 100 25 8 chr15 42669346 42669466 -43026288 - MER85 DNA T2_type -4 135 14 2015 144 21 0 chr15 42669468 42669759 -43025995 + AluSx SINE Alu 1 297 -15 465 222 0 0 chr15 42670029 42670144 -43025610 + FRAM SINE Alu 66 180 0 305 297 11 11 chr15 42670949 42671040 -43024714 + MIR SINE MIR 30 120 -88 183 238 95 0 chr15 42671017 42671059 -43024695 - L2 LINE L2 -17 3296 3251 * 2307 104 7 0 chr15 42671071 42671368 -43024386 + AluSx SINE Alu 1 299 -13 272 296 14 0 chr15 42671725 42671796 -43023958 + CT-rich Low_complexity Low_complexity 1 72 0 237 140 20 170 chr15 42672102 42672202 -43023552 - MIR SINE MIR -64 198 114 2503 87 0 0 chr15 42672459 42672768 -43022986 + AluSx SINE Alu 4 312 0 403 223 209 14 chr15 42673213 42673433 -43022321 + L1ME4a LINE L1 5848 6110 -11 329 188 18 87 chr15 42673433 42673591 -43022163 - MLT1H LTR MaLR -2 577 425 347 211 26 0 chr15 42673788 42673864 -43021890 - MLT1I LTR MaLR -264 145 68 1758 157 7 4 chr15 42674072 42674388 -43021366 - AluJb SINE Alu 0 317 1 626 268 48 61 chr15 42674632 42674927 -43020827 - L2 LINE L2 -2 3311 3021 240 316 53 15 chr15 42675523 42675618 -43020136 - L2 LINE L2 -213 3059 2956 1989 163 3 0 chr15 42675618 42675918 -43019836 + AluJo SINE Alu 8 308 -4 240 316 53 15 chr15 42675918 42675955 -43019799 - L2 LINE L2 -316 2956 2922 2160 103 0 3 chr15 42676301 42676607 -43019147 + AluSx SINE Alu 1 305 0 2336 103 10 0 chr15 42677199 42677499 -43018255 + AluSx SINE Alu 1 303 -9 788 260 61 41 chr15 42677852 42678194 -43017560 - LTR16B LTR ERVL 0 464 116 274 291 169 54 chr15 42678197 42678309 -43017445 + MIR SINE MIR 88 222 -40 2381 75 14 7 chr15 42678309 42678602 -43017152 + AluY SINE Alu 5 299 -12 274 291 169 54 chr15 42678602 42678637 -43017117 + MIR SINE MIR 222 252 -10 2205 130 0 0 chr15 42678920 42679219 -43016535 - AluSx SINE Alu -13 299 1 220 287 103 49 chr15 42679433 42679656 -43016098 + L2 LINE L2 2820 3054 -218 393 182 52 86 chr15 42679694 42679810 -43015944 + MIR SINE MIR 102 212 -50 308 248 159 28 chr15 42679932 42680077 -43015677 + MIR3 SINE MIR 20 183 -25 619 269 50 22 chr15 42680899 42681081 -43014673 - MIR SINE MIR -29 233 47 246 32 0 0 chr15 42681169 42681200 -43014554 + (TG)n Simple_repeat Simple_repeat 2 32 0 1409 187 8 12 chr15 42681200 42681446 -43014308 - AluJo SINE Alu -26 286 42 370 301 80 0 chr15 42682089 42682202 -43013552 + MIR SINE MIR 90 211 -51 313 294 20 20 chr15 42682618 42682720 -43013034 + MIR3 SINE MIR 3 104 -104 2830 147 25 39 chr15 42682805 42682878 -43012876 + L1MB3 LINE L1 5585 5658 -525 1624 175 11 18 chr15 42682878 42683164 -43012590 + AluJb SINE Alu 1 284 -28 2830 147 25 39 chr15 42683164 42683656 -43012098 + L1MB3 LINE L1 5658 6142 -41 1046 135 0 0 chr15 42683656 42683804 -43011950 + FRAM SINE Alu 29 176 0 2145 64 31 80 chr15 42683865 42684192 -43011562 + AluY SINE Alu 1 311 0 528 289 22 0 chr15 42685889 42686024 -43009730 - MIR SINE MIR -74 188 51 1256 120 245 94 chr15 42686160 42686511 -43009243 - MER4A LTR ERV1 0 664 261 654 101 0 10 chr15 42686511 42686610 -43009144 - MER4A LTR ERV1 -566 98 1 328 280 75 0 chr15 42687077 42687184 -43008570 - L2 LINE L2 -31 3241 3127 476 273 8 0 chr15 42687576 42687697 -43008057 - MIR3 SINE MIR -24 184 63 576 282 169 43 chr15 42687760 42688203 -43007551 - L2 LINE L2 -5 3308 2810 499 277 114 12 chr15 42688227 42688393 -43007361 + MIR SINE MIR 10 192 -70 1198 214 67 20 chr15 42688688 42689033 -43006721 + L1ME3A LINE L1 5801 6161 -9 432 55 0 0 chr15 42689033 42689064 -43006690 + (CA)n Simple_repeat Simple_repeat 1 86 0 432 55 0 0 chr15 42689064 42689119 -43006635 + (CA)n Simple_repeat Simple_repeat 2 56 0 1845 99 0 0 chr15 42689127 42689360 -43006394 - AluSc SINE Alu -26 283 51 327 264 214 7 chr15 42689733 42689873 -43005881 - MIR3 SINE MIR -17 191 23 2336 105 0 0 chr15 42690210 42690505 -43005249 - AluSx SINE Alu -17 295 1 557 319 11 22 chr15 42690532 42690714 -43005040 - MIR3 SINE MIR -4 204 25 2135 79 0 34 chr15 42691470 42691761 -43003993 - AluY SINE Alu -29 282 2 353 123 0 4 chr15 42691955 42692018 -43003736 + Alu SINE Alu 1 55 -244 219 114 0 0 chr15 42792191 42792203 -42903551 + (TG)n Simple_repeat Simple_repeat 1 47 0 219 114 0 0 chr15 42792203 42792238 -42903516 + (TG)n Simple_repeat Simple_repeat 2 36 0 2042 134 0 16 chr15 42792533 42792838 -42902916 + AluSx SINE Alu 1 300 -12 1862 189 51 127 chr15 42793198 42794289 -42901465 + L1PA11 LINE L1 5117 6067 -107 3241 142 51 89 chr15 42793503 42793958 -42901796 + L1PB4 LINE L1 5359 5773 -383 290 60 0 60 chr15 42793958 42794008 -42901746 + (CA)n Simple_repeat Simple_repeat 2 48 0 3241 142 51 89 chr15 42794008 42794340 -42901414 + L1PB4 LINE L1 5773 6116 -40 221 57 29 0 chr15 42794373 42794408 -42901346 + (TTTAA)n Simple_repeat Simple_repeat 3 38 0 446 145 0 0 chr15 42794408 42794470 -42901284 - AluSq SINE Alu -26 287 226 1505 91 0 0 chr15 42794470 42794657 -42901097 - AluSq SINE Alu -126 187 1 2248 102 0 3 chr15 42794950 42795253 -42900501 + AluSq SINE Alu 3 304 0 2346 65 0 39 chr15 42795560 42795870 -42899884 + AluY SINE Alu 1 298 -13 1979 109 3 21 chr15 42796286 42796593 -42899161 + AluSc SINE Alu 1 302 0 337 301 70 10 chr15 42796984 42797251 -42898503 + L1ME LINE L1 5374 5662 -459 1685 148 82 3 chr15 42797277 42797568 -42898186 + MER1B DNA MER1_type 24 337 -2 21 57 0 0 chr15 42797578 42797613 -42898141 + AT_rich Low_complexity Low_complexity 1 35 0 2239 99 0 3 chr15 42797722 42798015 -42897739 - AluSx SINE Alu -20 292 1 2499 78 0 3 chr15 42798270 42798576 -42897178 + AluSq SINE Alu 1 305 -8 964 86 0 0 chr15 42798590 42798706 -42897048 + AluY SINE Alu 1 116 -195 796 80 104 0 chr15 42798867 42798992 -42896762 - MER85 DNA T2_type -1 138 1 229 386 41 23 chr15 42799364 42799584 -42896170 + L2 LINE L2 2658 2881 -433 350 339 131 35 chr15 42799611 42799765 -42895989 + L2 LINE L2 2928 3066 -206 1885 179 0 0 chr15 42799765 42800061 -42895693 - AluJb SINE Alu -16 296 1 350 339 131 35 chr15 42800061 42800219 -42895535 + L2 LINE L2 3066 3270 -2 2333 96 3 0 chr15 42800223 42800526 -42895228 + AluSq SINE Alu 1 304 -9 216 0 0 0 chr15 42800578 42800602 -42895152 + (T)n Simple_repeat Simple_repeat 1 24 0 880 310 24 38 chr15 42800726 42801065 -42894689 - L2 LINE L2 -69 3244 2911 1572 164 67 27 chr15 42801067 42801366 -42894388 + AluJo SINE Alu 1 311 -1 1929 122 7 33 chr15 42802391 42802695 -42893059 + AluSx SINE Alu 1 296 -16 22 25 0 25 chr15 42802930 42802948 -42892806 + AT_rich Low_complexity Low_complexity 1 18 -21 2508 50 0 13 chr15 42802948 42803246 -42892508 + AluY SINE Alu 1 294 -17 22 25 0 25 chr15 42803246 42803267 -42892487 + AT_rich Low_complexity Low_complexity 18 39 0 402 154 26 13 chr15 42803599 42803677 -42892077 + MER5A DNA MER1_type 27 105 -84 2176 117 13 3 chr15 42805246 42805553 -42890201 + AluSx SINE Alu 1 310 -2 2225 88 7 3 chr15 42805732 42806039 -42889715 - AluSq SINE Alu 0 308 1 995 199 0 6 chr15 42806721 42806897 -42888857 + FAM SINE Alu 1 175 0 53 0 0 0 chr15 42806897 42806950 -42888804 + AT_rich Low_complexity Low_complexity 1 53 0 1646 171 10 26 chr15 42806971 42807108 -42888646 + AluJb SINE Alu 1 139 -173 2263 110 7 0 chr15 42807108 42807408 -42888346 + AluSq SINE Alu 1 302 -11 1646 171 10 26 chr15 42807408 42807574 -42888180 + AluJb SINE Alu 139 299 -13 2233 97 26 10 chr15 42807746 42808054 -42887700 + AluSq SINE Alu 1 313 0 1449 189 82 10 chr15 42809074 42809365 -42886389 + AluJo SINE Alu 1 312 0 5267 180 21 22 chr15 42809368 42810977 -42884777 + L1MC2 LINE L1 4735 6335 -9 874 155 0 0 chr15 42811072 42811201 -42884553 + AluSq/x SINE Alu 1 129 -183 2493 70 0 0 chr15 42811324 42811626 -42884128 - AluY SINE Alu -9 302 1 876 143 0 0 chr15 42812009 42812135 -42883619 - FLAM_C SINE Alu -7 126 1 185 308 58 50 chr15 42812310 42812351 -42883403 + L2 LINE L2 2741 2780 -534 2510 57 0 3 chr15 42812351 42812647 -42883107 + AluY SINE Alu 1 295 -16 185 308 58 50 chr15 42812647 42812725 -42883029 + L2 LINE L2 2780 2861 -453 258 321 171 54 chr15 42812781 42813021 -42882733 + L2 LINE L2 2957 3224 -48 387 0 0 0 chr15 42813047 42813090 -42882664 + (CA)n Simple_repeat Simple_repeat 2 44 0 1524 159 42 46 chr15 42813565 42813848 -42881906 + AluJo SINE Alu 1 282 -30 1745 181 28 3 chr15 42814173 42814460 -42881294 + AluJo SINE Alu 3 296 -16 2417 91 0 0 chr15 42814462 42814770 -42880984 + AluSc SINE Alu 1 308 -1 2144 111 34 0 chr15 42814786 42815083 -42880671 - AluSx SINE Alu -5 307 1 944 211 0 28 chr15 42815244 42815424 -42880330 + FAM SINE Alu 1 175 0 981 178 0 23 chr15 42815464 42815614 -42880140 + AluSg/x SINE Alu 128 275 -35 8887 68 7 0 chr15 42815614 42817492 -42878262 + L1PA7 LINE L1 4253 6146 -8 981 178 0 23 chr15 42817492 42817515 -42878239 + AluSg/x SINE Alu 275 297 -13 389 339 0 8 chr15 42817626 42817744 -42878010 - L2 LINE L2 -12 3260 3144 923 220 0 11 chr15 42817841 42818018 -42877736 - FAM SINE Alu 0 175 1 3768 159 44 33 chr15 42818098 42818829 -42876925 - L1MA7 LINE L1 -12 6279 5541 536 183 25 1 chr15 42818830 42818950 -42876804 + L1M3 LINE L1 5456 5581 -590 266 159 14 43 chr15 42819679 42819748 -42876006 - L1MB8 LINE L1 0 6178 6112 699 269 0 12 chr15 42819751 42819918 -42875836 - AluJo SINE Alu -1 311 147 333 0 0 0 chr15 42819940 42819977 -42875777 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2007 154 3 0 chr15 42819992 42820303 -42875451 + AluSx SINE Alu 1 312 0 1893 195 91 25 chr15 42820348 42820779 -42874975 + LTR2B LTR ERV1 32 490 0 2274 90 3 0 chr15 42820835 42821125 -42874629 - AluSx SINE Alu -21 291 1 347 253 72 18 chr15 42821134 42821300 -42874454 - L1M4 LINE L1 -2122 4024 3850 890 176 13 13 chr15 42821364 42821523 -42874231 - AluJo SINE Alu -142 170 12 41 36 0 0 chr15 42821865 42821920 -42873834 + AT_rich Low_complexity Low_complexity 1 55 0 222 37 0 0 chr15 42822270 42822297 -42873457 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 324 146 0 0 chr15 42822299 42822347 -42873407 - AluJb SINE Alu -21 281 234 2329 111 0 0 chr15 42822347 42822644 -42873110 - AluSx SINE Alu -15 297 1 1482 143 8 13 chr15 42822649 42822887 -42872867 - AluJb SINE Alu -75 237 1 1689 108 4 24 chr15 42823279 42823529 -42872225 - AluSx SINE Alu -12 300 56 1517 150 124 7 chr15 42823651 42823925 -42871829 - AluJb SINE Alu -6 306 1 459 258 48 87 chr15 42824039 42824130 -42871624 - Charlie8 DNA MER1_type -64 277 184 2351 115 0 0 chr15 42824130 42824442 -42871312 + AluSx SINE Alu 1 312 0 459 258 48 87 chr15 42824442 42824579 -42871175 - Charlie8 DNA MER1_type -157 184 58 1781 181 0 25 chr15 42824977 42825297 -42870457 - AluJo SINE Alu 0 312 1 769 171 0 0 chr15 42826124 42826235 -42869519 - FLAM_C SINE Alu -31 112 2 1663 134 45 62 chr15 42826266 42826558 -42869196 + AluJb SINE Alu 1 287 -25 1629 162 40 26 chr15 42826658 42826960 -42868794 - AluJo SINE Alu -6 306 1 2373 91 3 0 chr15 42827100 42827398 -42868356 - AluSp SINE Alu -14 299 1 441 219 47 39 chr15 42827659 42827787 -42867967 - MIR SINE MIR -15 247 119 1992 175 40 37 chr15 42827949 42828497 -42867257 + MLT2A2 LTR ERVL 1 554 0 509 283 103 13 chr15 42829400 42829577 -42866177 - MIR SINE MIR 0 262 60 183 100 0 0 chr15 42829577 42829607 -42866147 + (CAGAGA)n Simple_repeat Simple_repeat 1 30 0 509 283 103 13 chr15 42829607 42829647 -42866107 - MIR SINE MIR -202 60 25 1798 188 0 3 chr15 42829769 42830057 -42865697 - AluSx SINE Alu -25 287 1 2144 119 3 0 chr15 42830093 42830387 -42865367 + AluSx SINE Alu 1 295 -17 43892 30 23 1 chr15 42830391 42836427 -42859327 + L1PA2 LINE L1 1 6168 0 22 88 0 0 chr15 42836445 42836502 -42859252 + AT_rich Low_complexity Low_complexity 1 57 0 686 200 14 0 chr15 42836555 42836700 -42859054 + L1PBa LINE L1 2087 2233 -4630 2292 117 0 0 chr15 42836701 42837009 -42858745 + AluSq SINE Alu 1 308 -5 2268 194 123 38 chr15 42837013 42837044 -42858710 + L1PBa LINE L1 2632 2659 -4203 1027 120 0 0 chr15 42837044 42837177 -42858577 + FLAM_C SINE Alu 1 133 0 2268 194 123 38 chr15 42837177 42837875 -42857879 + L1PBa LINE L1 2659 3428 -3434 1134 118 0 30 chr15 42837875 42838044 -42857710 - AluSx SINE Alu -148 164 1 3592 141 2 38 chr15 42838059 42838606 -42857148 - MER1A DNA MER1_type 0 527 1 326 236 11 56 chr15 42839659 42839748 -42856006 + L2 LINE L2 3188 3272 0 203 247 13 39 chr15 42839750 42839827 -42855927 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 21 0 0 0 chr15 42840181 42840202 -42855552 + AT_rich Low_complexity Low_complexity 1 21 0 736 206 0 8 chr15 42840204 42840335 -42855419 + FLAM_A SINE Alu 3 132 -1 2322 107 0 0 chr15 42840672 42840980 -42854774 + AluSx SINE Alu 1 308 -4 1458 182 64 7 chr15 42841077 42841357 -42854397 - AluJo SINE Alu -16 296 1 3132 186 94 9 chr15 42841360 42842043 -42853711 - L1MB4 LINE L1 0 6180 5440 2306 106 3 3 chr15 42842144 42842455 -42853299 + AluSp SINE Alu 1 311 -2 2095 124 3 0 chr15 42842462 42842753 -42853001 + AluSq SINE Alu 1 292 -21 864 219 0 83 chr15 42842885 42843020 -42852734 + MER5A DNA MER1_type 1 115 -74 2151 102 0 0 chr15 42843020 42843326 -42852428 - AluSx SINE Alu 0 312 14 864 219 0 83 chr15 42843326 42843395 -42852359 + MER5A DNA MER1_type 115 188 -1 273 293 60 35 chr15 42843662 42843894 -42851860 - L1M4 LINE L1 -3164 2982 2745 251 314 57 0 chr15 42844124 42844264 -42851490 - L1M4 LINE L1 -3605 2541 2394 1705 169 0 14 chr15 42844410 42844689 -42851065 + AluJb SINE Alu 13 287 -25 1028 106 0 68 chr15 42844689 42844716 -42851038 - AluSc SINE Alu -159 150 123 2944 9 0 0 chr15 42844716 42845031 -42850723 - AluYb8 SINE Alu -3 315 1 1028 106 0 68 chr15 42845031 42845164 -42850590 - AluSc SINE Alu -186 123 1 1458 155 13 9 chr15 42845221 42845447 -42850307 - AluJo SINE Alu -31 281 55 487 249 67 12 chr15 42845907 42846072 -42849682 + MIR SINE MIR 29 202 -60 23 0 0 0 chr15 42846439 42846462 -42849292 + AT_rich Low_complexity Low_complexity 1 23 0 1022 195 5 41 chr15 42846534 42846729 -42849025 - MER5A DNA MER1_type 0 189 2 1500 97 5 0 chr15 42846739 42846934 -42848820 + AluSp SINE Alu 83 278 -35 252 0 0 0 chr15 42846935 42846963 -42848791 + (CA)n Simple_repeat Simple_repeat 2 29 0 461 191 224 34 chr15 42847137 42847284 -42848470 - MER5B DNA MER1_type -2 176 2 530 300 32 8 chr15 42848434 42848602 -42847152 + MIR3 SINE MIR 32 205 -3 2093 101 32 0 chr15 42849528 42849806 -42845948 - AluSc SINE Alu -21 288 2 614 200 95 0 chr15 42849838 42849943 -42845811 + FLAM_C SINE Alu 3 117 -26 36 0 0 0 chr15 42849944 42849980 -42845774 + AT_rich Low_complexity Low_complexity 1 36 0 2564 187 45 66 chr15 42849980 42850149 -42845605 + L1MC2 LINE L1 4921 5092 -1252 2126 123 0 0 chr15 42850149 42850484 -42845270 - AluSq SINE Alu 0 335 1 2564 187 45 66 chr15 42850484 42851197 -42844557 + L1MC2 LINE L1 5092 5818 -526 912 139 8 0 chr15 42851197 42851326 -42844428 + FLAM_A SINE Alu 2 131 -2 2564 187 45 66 chr15 42851326 42851452 -42844302 + L1MC2 LINE L1 5818 5945 -399 2181 102 3 3 chr15 42851452 42851745 -42844009 + AluSc SINE Alu 1 293 -16 2564 187 45 66 chr15 42851745 42852208 -42843546 + L1MC2 LINE L1 5945 6320 -24 2319 88 0 16 chr15 42852576 42852882 -42842872 + AluSq SINE Alu 1 301 -12 857 156 0 22 chr15 42853521 42853656 -42842098 + FLAM_A SINE Alu 2 133 0 21 0 0 0 chr15 42853656 42853677 -42842077 + AT_rich Low_complexity Low_complexity 1 21 0 2429 60 0 26 chr15 42853938 42854240 -42841514 + AluY SINE Alu 1 294 -17 1276 138 32 0 chr15 42854885 42855103 -42840651 + AluSg/x SINE Alu 88 312 0 1638 175 42 7 chr15 42855238 42855523 -42840231 - AluJo SINE Alu -17 295 1 1812 145 199 100 chr15 42855644 42855697 -42840057 + MLT2B3 LTR ERVL 1 47 -507 2290 82 7 0 chr15 42855697 42855988 -42839766 + AluSp SINE Alu 21 313 0 1812 145 199 100 chr15 42855988 42856432 -42839322 + MLT2B3 LTR ERVL 47 547 -7 1787 169 0 7 chr15 42856657 42856952 -42838802 - AluJb SINE Alu -15 297 5 327 25 0 0 chr15 42856953 42856993 -42838761 + (TG)n Simple_repeat Simple_repeat 2 41 0 516 97 0 0 chr15 42857000 42857072 -42838682 - AluJ/FLAM SINE Alu -239 73 2 1673 65 5 9 chr15 42857515 42857731 -42838023 + AluY SINE Alu 83 297 -14 26 0 0 0 chr15 42857731 42857757 -42837997 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr15 42858629 42858650 -42837104 + AT_rich Low_complexity Low_complexity 1 21 0 2072 93 14 7 chr15 42858660 42858940 -42836814 - AluSx SINE Alu -28 284 3 253 338 89 9 chr15 42859034 42859166 -42836588 + MIR SINE MIR 4 142 -66 806 173 0 0 chr15 42859693 42859826 -42835928 + FLAM_C SINE Alu 11 143 0 2250 89 31 0 chr15 42860042 42860335 -42835419 - AluSx SINE Alu -10 302 1 262 99 50 99 chr15 42860345 42860486 -42835268 + (TTATA)n Simple_repeat Simple_repeat 5 138 0 1978 151 3 0 chr15 42860513 42860817 -42834937 + AluSx SINE Alu 1 305 -7 2455 66 0 13 chr15 42860942 42861243 -42834511 + AluSx SINE Alu 1 297 -15 2329 87 0 3 chr15 42861489 42861788 -42833966 - AluSc SINE Alu -11 298 1 2266 111 3 3 chr15 42862022 42862328 -42833426 + AluSx SINE Alu 1 306 -6 2094 112 14 10 chr15 42862328 42862457 -42833297 + AluSx SINE Alu 1 128 -184 216 0 0 0 chr15 42862457 42862481 -42833273 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2094 112 14 10 chr15 42862481 42862645 -42833109 + AluSx SINE Alu 128 296 -16 852 40 20 0 chr15 42862839 42862938 -42832816 - AluSq/x SINE Alu -184 129 29 1676 196 7 0 chr15 42862955 42863246 -42832508 - AluJb SINE Alu -17 295 3 2350 66 13 26 chr15 42863485 42863790 -42831964 - AluY SINE Alu -10 301 1 323 187 55 0 chr15 42863846 42863937 -42831817 - L1ME4a LINE L1 -27 6094 5999 315 241 153 44 chr15 42863997 42864134 -42831620 - L1ME4a LINE L1 -66 6055 5904 222 250 54 18 chr15 42864136 42864192 -42831562 + L2 LINE L2 3249 3306 -7 25 0 0 0 chr15 42864505 42864530 -42831224 + AT_rich Low_complexity Low_complexity 1 25 0 2533 66 0 0 chr15 42864657 42864962 -42830792 + AluY SINE Alu 1 305 -6 1640 187 0 7 chr15 42865182 42865476 -42830278 - AluJo SINE Alu -17 295 4 1173 141 0 22 chr15 42866073 42866241 -42829513 - AluSc SINE Alu -10 299 134 2158 120 3 3 chr15 42866241 42866542 -42829212 - AluSx SINE Alu -11 301 1 1173 141 0 22 chr15 42866542 42866557 -42829197 - AluSc SINE Alu -175 134 120 1596 231 143 25 chr15 42866559 42866600 -42829154 - L1ME4a LINE L1 -246 5924 5889 2423 99 0 6 chr15 42866600 42866912 -42828842 - AluSx SINE Alu -2 310 1 1596 231 143 25 chr15 42866912 42867395 -42828359 - L1ME4a LINE L1 -281 5889 5338 377 161 126 46 chr15 42867398 42867485 -42828269 - AluSc SINE Alu -1 298 205 2348 91 0 3 chr15 42868225 42868534 -42827220 - AluY SINE Alu -3 308 1 967 157 0 164 chr15 42868619 42868893 -42826861 + AluJo SINE Alu 1 229 -83 2419 90 0 7 chr15 42869273 42869583 -42826171 - AluSx SINE Alu -2 310 3 1871 104 50 29 chr15 42869835 42870134 -42825620 - AluSx SINE Alu 0 305 1 857 211 6 0 chr15 42870162 42870337 -42825417 + AluJb SINE Alu 137 312 0 775 192 0 0 chr15 42870492 42870617 -42825137 + FLAM_C SINE Alu 1 125 -18 1178 160 0 6 chr15 42870624 42870805 -42824949 - AluJo SINE Alu -132 180 1 231 192 0 90 chr15 42870903 42870981 -42824773 - MARNA DNA Mariner -496 90 20 230 0 33 0 chr15 42871281 42871311 -42824443 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 1810 131 0 45 chr15 42871315 42871467 -42824287 - AluSx SINE Alu -35 277 143 2276 100 0 7 chr15 42871467 42871766 -42823988 - AluY SINE Alu -14 297 1 1810 131 0 45 chr15 42871766 42871903 -42823851 - AluSx SINE Alu -169 143 1 1088 195 75 0 chr15 42871956 42872223 -42823531 + L1MD3 LINE L1 6953 7239 -756 * 1250 164 52 37 chr15 42872221 42872517 -42823237 + L1MD3 LINE L1 6157 6303 -41 2305 78 10 0 chr15 42872557 42872851 -42822903 - AluSp SINE Alu -16 297 1 2269 113 0 7 chr15 42872855 42873157 -42822597 - AluSq SINE Alu -13 300 1 29 0 0 0 chr15 42873167 42873196 -42822558 + AT_rich Low_complexity Low_complexity 1 29 0 2122 95 0 11 chr15 42873205 42873489 -42822265 - AluY SINE Alu -26 285 5 2129 91 0 24 chr15 42873492 42873789 -42821965 - AluSc SINE Alu -18 291 2 2266 96 7 0 chr15 42874241 42874534 -42821220 + AluSp SINE Alu 1 295 -18 2092 115 47 0 chr15 42874646 42874942 -42820812 - AluSx SINE Alu -2 310 1 1396 172 116 0 chr15 42875050 42875317 -42820437 - AluJb SINE Alu -14 298 1 2503 84 0 0 chr15 42875475 42875785 -42819969 - AluY SINE Alu -1 310 1 391 273 124 12 chr15 42875791 42875952 -42819802 + MIR SINE MIR 70 248 -14 1525 210 14 4 chr15 42876049 42876330 -42819424 + AluJo SINE Alu 6 289 -23 204 269 39 0 chr15 42876455 42876507 -42819247 - MIR SINE MIR -12 250 197 2301 79 3 3 chr15 42877717 42878008 -42817746 + AluY SINE Alu 1 291 -20 1711 187 7 0 chr15 42878148 42878442 -42817312 + AluJb SINE Alu 3 298 -14 505 81 0 0 chr15 42878506 42878568 -42817186 - Alu SINE Alu -249 63 2 2400 71 7 7 chr15 42878581 42878889 -42816865 - AluY SINE Alu -3 308 1 326 291 78 0 chr15 42879011 42879114 -42816640 + MIR3 SINE MIR 75 185 -23 1906 114 77 0 chr15 42879262 42879534 -42816220 + AluSg1 SINE Alu 1 293 -16 2316 103 3 0 chr15 42880356 42880656 -42815098 - AluSq SINE Alu -11 302 2 180 179 0 0 chr15 42880748 42880787 -42814967 + (TATG)n Simple_repeat Simple_repeat 4 42 0 414 269 52 43 chr15 42881070 42881438 -42814316 + L1ME LINE L1 5192 5562 -559 2372 139 6 8 chr15 42881461 42881820 -42813934 + L1MC1 LINE L1 5968 6325 -8 952 113 8 0 chr15 42881821 42881945 -42813809 + FLAM_C SINE Alu 1 125 -8 2455 61 0 7 chr15 42882017 42882311 -42813443 - AluY SINE Alu -18 293 2 1531 170 83 7 chr15 42883532 42883809 -42811945 - AluJo SINE Alu -14 298 1 2085 90 18 7 chr15 42883905 42884218 -42811536 - AluSc SINE Alu 0 316 1 2140 94 0 4 chr15 42884839 42885116 -42810638 - AluY SINE Alu -2 309 34 1828 134 0 4 chr15 42885177 42885439 -42810315 + AluJo SINE Alu 34 294 -18 303 277 24 0 chr15 42885573 42885656 -42810098 - L2 LINE L2 -298 2974 2890 1763 208 80 25 chr15 42885684 42886122 -42809632 - MLT1C LTR MaLR 0 467 6 241 355 104 56 chr15 42886136 42886387 -42809367 - L2 LINE L2 -496 2818 2556 1002 166 0 43 chr15 42886410 42886573 -42809181 + FRAM SINE Alu 1 156 -10 818 163 0 0 chr15 42886774 42886897 -42808857 + FLAM_C SINE Alu 2 124 -9 253 353 84 0 chr15 42887030 42887149 -42808605 + L2 LINE L2 3136 3264 -8 305 320 10 10 chr15 42887189 42887292 -42808462 - MIR3 SINE MIR -7 201 99 1679 196 0 13 chr15 42887343 42887644 -42808110 - AluJb SINE Alu -15 297 1 668 192 8 40 chr15 42887654 42887779 -42807975 - FLAM_A SINE Alu -12 121 1 27 0 0 0 chr15 42887779 42887806 -42807948 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr15 42887837 42887859 -42807895 + AT_rich Low_complexity Low_complexity 1 22 0 2090 111 18 0 chr15 42888441 42888744 -42807010 - AluSq SINE Alu 0 308 1 2440 75 3 0 chr15 42889680 42889988 -42805766 - AluY SINE Alu 0 311 3 270 186 153 59 chr15 42890053 42890146 -42805608 - L1ME4a LINE L1 -37 6084 6001 2258 113 0 0 chr15 42890146 42890446 -42805308 - AluSg SINE Alu -10 300 1 2307 101 3 0 chr15 42890446 42890753 -42805001 - AluSp SINE Alu -4 309 1 270 186 153 59 chr15 42890753 42890776 -42804978 - L1ME4a LINE L1 -119 6002 5956 2181 103 0 31 chr15 42890846 42891165 -42804589 - AluY SINE Alu -2 309 1 484 171 0 105 chr15 42891287 42891361 -42804393 + MER7A DNA MER2_type 5 64 -2974 1991 98 98 0 chr15 42891361 42891627 -42804127 + AluSg SINE Alu 1 292 -18 484 171 0 105 chr15 42891627 42891657 -42804097 + MER7A DNA MER2_type 64 96 -250 1614 136 4 0 chr15 42891785 42892013 -42803741 - AluSx SINE Alu -83 229 1 1382 138 73 54 chr15 42892013 42892140 -42803614 + MER7A DNA MER2_type 73 196 -2833 1951 121 57 4 chr15 42892140 42892420 -42803334 + AluSx SINE Alu 2 296 -16 1382 138 73 54 chr15 42892420 42892552 -42803202 + MER7A DNA MER2_type 196 337 0 356 319 116 7 chr15 42892555 42892703 -42803051 - MIR3 SINE MIR -67 141 7 2494 66 13 0 chr15 42893564 42893865 -42801889 + AluSc SINE Alu 1 305 -4 29 28 0 0 chr15 42893905 42893941 -42801813 + AT_rich Low_complexity Low_complexity 1 36 0 2203 116 3 3 chr15 42895151 42895454 -42800300 - AluSx SINE Alu -9 303 1 630 154 111 17 chr15 42896024 42896141 -42799613 - FLAM_C SINE Alu -5 128 1 2094 122 0 3 chr15 42896178 42896474 -42799280 + AluY SINE Alu 1 295 -16 255 175 0 0 chr15 42896706 42896763 -42798991 + (TATG)n Simple_repeat Simple_repeat 2 58 0 2409 103 0 0 chr15 42896795 42897097 -42798657 + AluSx SINE Alu 1 302 -10 2078 122 7 7 chr15 42897100 42897396 -42798358 + AluY SINE Alu 5 300 -11 1844 154 27 3 chr15 42897761 42898053 -42797701 - AluSx SINE Alu -13 299 1 2200 122 0 10 chr15 42898985 42899289 -42796465 - AluSx SINE Alu -11 301 1 2426 95 0 6 chr15 42899410 42899725 -42796029 + AluSq SINE Alu 1 313 0 560 203 101 22 chr15 42899853 42899991 -42795763 + MER103 DNA DNA 15 163 -3 2289 97 0 31 chr15 42901799 42902120 -42793634 + AluSx SINE Alu 1 311 -1 1136 128 12 0 chr15 42902122 42902286 -42793468 + AluSg/x SINE Alu 128 293 -19 180 0 0 0 chr15 42902481 42902501 -42793253 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 1595 181 14 4 chr15 42902501 42902782 -42792972 - AluJb SINE Alu -28 284 1 2246 112 3 0 chr15 42902828 42903124 -42792630 - AluSp SINE Alu -16 297 1 1710 181 14 0 chr15 42903391 42903679 -42792075 + AluJo SINE Alu 3 294 -18 189 0 0 0 chr15 42904144 42904165 -42791589 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1601 95 102 91 chr15 42904168 42904453 -42791301 - AluSx SINE Alu -24 288 1 2599 47 0 0 chr15 42904777 42905076 -42790678 + AluY SINE Alu 1 299 -12 812 100 125 8 chr15 42905088 42905208 -42790546 + AluJo SINE Alu 2 135 -177 1945 146 7 17 chr15 42905208 42905510 -42790244 + AluJo SINE Alu 1 299 -13 2101 103 7 39 chr15 42906079 42906389 -42789365 - AluSx SINE Alu -12 300 1 197 167 119 0 chr15 42906634 42906676 -42789078 - L3b LINE CR1 -246 1337 1291 2324 109 0 0 chr15 42906909 42907221 -42788533 - AluSx SINE Alu 0 312 1 2234 72 0 42 chr15 42907375 42907549 -42788205 - AluSc SINE Alu -14 295 138 2136 84 3 56 chr15 42907549 42907872 -42787882 - AluSc SINE Alu -3 306 1 2234 72 0 42 chr15 42907872 42908004 -42787750 - AluSc SINE Alu -171 138 2 264 125 0 0 chr15 42908118 42908158 -42787596 - MER4D LTR ERV1 -73 830 791 220 179 18 36 chr15 42908907 42908963 -42786791 + C-rich Low_complexity Low_complexity 5 59 0 340 309 25 37 chr15 42910148 42910310 -42785444 + MIR SINE MIR 11 170 -92 2140 111 0 4 chr15 42910722 42911032 -42784722 - AluSg SINE Alu 0 309 1 805 223 6 24 chr15 42911205 42911371 -42784383 - FRAM SINE Alu -13 163 1 2324 110 0 7 chr15 42911381 42911691 -42784063 - AluSg SINE Alu -2 308 1 1990 166 0 0 chr15 42911947 42912249 -42783505 - AluSx SINE Alu -10 302 1 2316 92 16 0 chr15 42912311 42912614 -42783140 + AluSp SINE Alu 1 308 -5 1948 140 10 3 chr15 42912722 42913030 -42782724 - AluSx SINE Alu -2 310 1 1789 144 35 0 chr15 42913174 42913458 -42782296 - AluSx SINE Alu -18 294 1 2454 60 0 26 chr15 42914541 42914843 -42780911 - AluY SINE Alu -17 294 1 833 134 0 35 chr15 42915105 42915256 -42780498 - FLAM_A SINE Alu 0 151 6 2256 92 3 16 chr15 42915899 42916202 -42779552 - AluSq SINE Alu -12 301 3 2400 79 7 7 chr15 42916251 42916555 -42779199 + AluY SINE Alu 1 304 -7 1911 121 0 25 chr15 42916556 42916838 -42778916 + AluSx SINE Alu 29 303 -9 2200 123 10 0 chr15 42917489 42917798 -42777956 - AluSx SINE Alu 0 312 1 2816 22 0 13 chr15 42917798 42918116 -42777638 - AluYb8 SINE Alu -4 314 1 567 141 0 11 chr15 42918121 42918213 -42777541 - FLAM_A SINE Alu -19 123 33 1607 171 46 30 chr15 42919370 42919505 -42776249 + AluJo SINE Alu 1 132 -180 1920 124 17 3 chr15 42919505 42919796 -42775958 + AluSx SINE Alu 1 295 -17 1607 171 46 30 chr15 42919796 42919965 -42775789 + AluJo SINE Alu 132 310 -2 2206 113 3 10 chr15 42920040 42920350 -42775404 + AluSq SINE Alu 5 312 -1 2238 107 0 7 chr15 42920371 42920662 -42775092 - AluSc SINE Alu -20 289 1 1939 90 112 14 chr15 42920874 42921152 -42774602 + AluSq SINE Alu 1 305 -8 1821 181 3 10 chr15 42921894 42922203 -42773551 + AluJo SINE Alu 1 307 -5 1175 127 30 0 chr15 42922375 42922540 -42773214 - AluSg/x SINE Alu -17 295 126 1452 143 57 49 chr15 42922893 42923158 -42772596 - AluJo SINE Alu -16 296 30 2163 117 3 3 chr15 42923183 42923481 -42772273 - AluSq SINE Alu -13 300 3 225 0 0 0 chr15 42923647 42923672 -42772082 + (T)n Simple_repeat Simple_repeat 1 25 0 2555 69 0 0 chr15 42923779 42924083 -42771671 - AluY SINE Alu -7 304 1 2174 114 0 17 chr15 42924083 42924381 -42771373 - AluSx SINE Alu -18 294 1 2083 113 25 0 chr15 42924429 42924712 -42771042 - AluSx SINE Alu -22 290 1 2367 64 0 0 chr15 42925148 42925455 -42770299 + AluY SINE Alu 1 307 0 2053 119 24 0 chr15 42925507 42925801 -42769953 + AluSg SINE Alu 1 301 -9 2286 79 10 3 chr15 42927075 42927367 -42768387 + AluY SINE Alu 1 294 -17 1653 208 0 6 chr15 42927378 42927691 -42768063 + AluSx SINE Alu 1 311 -1 2201 110 7 7 chr15 42927928 42928237 -42767517 - AluSc SINE Alu 0 309 1 1628 149 75 4 chr15 42928239 42928507 -42767247 - AluSx SINE Alu -25 287 1 2323 116 0 0 chr15 42928759 42929061 -42766693 + AluSg SINE Alu 1 302 -8 21 36 0 0 chr15 42929177 42929205 -42766549 + AT_rich Low_complexity Low_complexity 1 28 0 402 123 0 0 chr15 42929205 42929262 -42766492 - Alu SINE Alu -10 292 236 451 106 15 0 chr15 42929266 42929332 -42766422 - L1PA8A LINE L1 -28 6103 6037 1316 134 5 0 chr15 42929332 42929518 -42766236 - AluSx SINE Alu -110 202 16 2250 83 3 20 chr15 42930001 42930303 -42765451 + AluSg SINE Alu 2 298 -12 450 0 0 0 chr15 42930303 42930353 -42765401 + (TA)n Simple_repeat Simple_repeat 2 51 0 1351 76 23 0 chr15 42930563 42930734 -42765020 - AluSg/x SINE Alu -4 308 134 2345 78 13 19 chr15 42930734 42931041 -42764713 - AluY SINE Alu -6 305 1 401 210 12 0 chr15 42931269 42931350 -42764404 - FLAM_C SINE Alu -25 118 37 2283 105 0 0 chr15 42931446 42931741 -42764013 + AluSg SINE Alu 1 295 -15 248 276 124 0 chr15 42931754 42931859 -42763895 + MIR SINE MIR 51 168 -94 188 258 196 21 chr15 42931908 42932005 -42763749 - L2 LINE L2 0 3313 3200 2159 127 3 16 chr15 42932010 42932326 -42763428 + AluJb SINE Alu 1 312 0 180 0 0 0 chr15 42932711 42932731 -42763023 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2139 138 0 6 chr15 42932916 42933227 -42762527 + AluSg SINE Alu 1 309 -1 1578 178 64 4 chr15 42933254 42933535 -42762219 + AluJb SINE Alu 1 298 -14 1848 122 6 81 chr15 42934923 42935345 -42760409 + AluJb SINE Alu 2 398 0 2077 101 3 57 chr15 42935506 42935824 -42759930 + AluSx SINE Alu 1 301 -11 2301 122 0 0 chr15 42936169 42936480 -42759274 - AluSx SINE Alu -1 311 1 2159 128 3 7 chr15 42936941 42937247 -42758507 - AluSx SINE Alu -7 305 1 1929 118 11 0 chr15 42937275 42937545 -42758209 + AluSx SINE Alu 1 273 -39 320 124 21 0 chr15 42937667 42937726 -42758028 - Alu SINE Alu -257 46 2 225 283 26 88 chr15 42937836 42937859 -42757895 - L2 LINE L2 0 3313 3290 1969 146 14 0 chr15 42937859 42938154 -42757600 + AluSx SINE Alu 1 299 -13 2182 102 0 3 chr15 42938157 42938477 -42757277 + AluSg SINE Alu 1 319 0 225 283 26 88 chr15 42938477 42938561 -42757193 - L2 LINE L2 -25 3288 3208 1635 124 0 13 chr15 42938914 42939148 -42756606 + AluSg/x SINE Alu 69 299 -13 1380 102 84 14 chr15 42939334 42939549 -42756205 - MER30 DNA MER1_type 0 230 1 225 167 24 0 chr15 42939586 42939628 -42756126 + MER57A LTR ERV1 295 337 -66 2410 98 3 0 chr15 42939645 42939952 -42755802 + AluSp SINE Alu 1 308 -5 2045 141 7 0 chr15 42940461 42940765 -42754989 + AluJb SINE Alu 1 306 -6 2256 93 0 20 chr15 42940768 42941070 -42754684 + AluSg SINE Alu 2 297 -13 312 296 0 0 chr15 42941098 42941169 -42754585 - L2 LINE L2 -2 3270 3200 189 0 0 0 chr15 42941350 42941371 -42754383 + (A)n Simple_repeat Simple_repeat 1 21 0 252 135 0 0 chr15 42941382 42941419 -42754335 - ERVL LTR ERVL -1243 4521 4485 2264 118 0 0 chr15 42941540 42941837 -42753917 + AluSx SINE Alu 1 297 -15 2201 100 10 0 chr15 42941839 42942129 -42753625 + AluSg SINE Alu 1 293 -17 23 0 0 0 chr15 42942236 42942259 -42753495 + AT_rich Low_complexity Low_complexity 1 23 0 518 107 0 7 chr15 42942291 42942534 -42753220 - AluSc SINE Alu -1 308 1 287 250 40 13 chr15 42942539 42942615 -42753139 + L2 LINE L2 3177 3254 -18 1759 113 29 48 chr15 42942666 42942976 -42752778 + AluSg SINE Alu 1 304 -6 2032 121 7 7 chr15 42943174 42943472 -42752282 - AluSx SINE Alu -14 298 1 383 327 44 9 chr15 42943476 42943702 -42752052 - L2 LINE L2 -604 2710 2477 183 80 0 0 chr15 42943994 42944019 -42751735 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 1969 91 4 0 chr15 42944021 42944262 -42751492 - AluSp SINE Alu -36 277 36 2408 100 3 3 chr15 42945191 42945502 -42750252 - AluSq SINE Alu -2 311 1 22 35 0 0 chr15 42945727 42945756 -42749998 + AT_rich Low_complexity Low_complexity 1 29 0 633 179 152 7 chr15 42945759 42945910 -42749844 + AluJo SINE Alu 114 286 -26 34 0 0 0 chr15 42945910 42945944 -42749810 + AT_rich Low_complexity Low_complexity 1 34 0 2324 69 3 13 chr15 42946669 42946973 -42748781 - AluY SINE Alu -10 301 1 1501 233 72 47 chr15 42946986 42947169 -42748585 - L2 LINE L2 -5 3308 3131 2372 67 7 0 chr15 42947169 42947454 -42748300 + AluY SINE Alu 1 287 -24 1501 233 72 47 chr15 42947454 42948052 -42747702 - L2 LINE L2 -182 3131 2529 295 122 0 0 chr15 42948054 42948095 -42747659 - AluJo SINE Alu -12 290 250 1068 133 0 48 chr15 42948095 42948260 -42747494 - AluJo SINE Alu -155 157 1 1315 241 26 34 chr15 42948349 42948381 -42747373 - L2 LINE L2 -1347 1967 1936 2334 93 3 13 chr15 42948381 42948682 -42747072 + AluSx SINE Alu 1 298 -14 1315 241 26 34 chr15 42948682 42949027 -42746727 - L2 LINE L2 -1378 1936 1593 882 153 0 0 chr15 42949415 42949546 -42746208 + FLAM_C SINE Alu 1 131 -2 180 0 0 0 chr15 42950422 42950442 -42745312 + (T)n Simple_repeat Simple_repeat 1 20 0 812 98 0 9 chr15 42950804 42950916 -42744838 - HY1 scRNA scRNA -1 111 1 240 35 0 0 chr15 42950943 42950972 -42744782 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2141 75 0 127 chr15 42951017 42951364 -42744390 + AluSc SINE Alu 1 303 -6 2241 89 0 7 chr15 42951663 42951987 -42743767 + AluY SINE Alu 1 322 0 487 291 3 7 chr15 42952545 42952694 -42743060 + MIR3 SINE MIR 56 205 -3 2111 101 32 0 chr15 42953620 42953898 -42741856 - AluSc SINE Alu -21 288 2 569 200 95 0 chr15 42953930 42954035 -42741719 + FLAM_C SINE Alu 3 117 -26 36 0 0 0 chr15 42954036 42954072 -42741682 + AT_rich Low_complexity Low_complexity 1 36 0 2503 188 50 84 chr15 42954072 42954241 -42741513 + L1MC2 LINE L1 4921 5094 -1250 2145 123 0 0 chr15 42954241 42954576 -42741178 - AluSq SINE Alu 0 335 1 2503 188 50 84 chr15 42954576 42955289 -42740465 + L1MC2 LINE L1 5094 5830 -514 854 145 8 0 chr15 42955289 42955420 -42740334 + FLAM_A SINE Alu 2 133 0 2503 188 50 84 chr15 42955420 42955544 -42740210 + L1MC2 LINE L1 5830 5957 -387 2200 102 3 3 chr15 42955544 42955837 -42739917 + AluSc SINE Alu 1 293 -16 2503 188 50 84 chr15 42955837 42956300 -42739454 + L1MC2 LINE L1 5957 6320 -24 2307 89 0 16 chr15 42956670 42956973 -42738781 + AluSx SINE Alu 1 298 -14 2025 112 0 17 chr15 42956986 42957282 -42738472 + AluSx SINE Alu 1 291 -21 2342 87 10 0 chr15 42957287 42957585 -42738169 + AluSq SINE Alu 2 302 -11 2515 66 3 3 chr15 42958343 42958648 -42737106 - AluSp SINE Alu -1 312 8 2218 119 7 0 chr15 42958814 42959116 -42736638 - AluSg SINE Alu -6 304 1 634 187 187 16 chr15 42959938 42960120 -42735634 + MER46C DNA MER2_type 2 214 -124 2215 123 7 0 chr15 42960120 42960429 -42735325 - AluSp SINE Alu -2 311 1 1782 166 7 3 chr15 42960431 42960720 -42735034 - AluJo SINE Alu -21 291 2 439 227 0 23 chr15 42960785 42960873 -42734881 - FRAM/FAM SINE Alu -92 84 1 259 270 70 30 chr15 42960881 42960981 -42734773 - MIR SINE MIR -67 141 38 2531 70 0 0 chr15 42961431 42961730 -42734024 + AluSg SINE Alu 1 299 -11 2376 63 11 3 chr15 42961730 42962015 -42733739 + AluSc SINE Alu 1 288 -21 1654 161 39 73 chr15 42962485 42962555 -42733199 - L1MD2 LINE L1 -1 6358 6287 1491 188 35 14 chr15 42962555 42962837 -42732917 + AluJb SINE Alu 1 288 -24 1654 161 39 73 chr15 42962837 42963150 -42732604 - L1MD2 LINE L1 -72 6287 5988 2329 110 0 0 chr15 42963276 42963577 -42732177 + AluSx SINE Alu 1 301 -11 1552 174 62 4 chr15 42963658 42963934 -42731820 - AluSx SINE Alu -20 292 1 584 244 105 23 chr15 42963993 42964259 -42731495 - HAL1 LINE L1 -309 2198 1911 766 188 36 85 chr15 42964412 42964636 -42731118 - L1ME3 LINE L1 0 6162 5950 2393 87 0 16 chr15 42964658 42964968 -42730786 - AluSg SINE Alu -5 305 1 249 296 0 61 chr15 42965423 42965521 -42730233 - L2 LINE L2 -48 3224 3133 1466 167 32 39 chr15 42965848 42965945 -42729809 + AluJo SINE Alu 24 120 -192 294 29 0 0 chr15 42965945 42965980 -42729774 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1466 167 32 39 chr15 42965980 42966163 -42729591 + AluJo SINE Alu 120 302 -10 2299 102 13 0 chr15 42966208 42966513 -42729241 - AluSg SINE Alu 0 310 2 2404 87 7 0 chr15 42966563 42966862 -42728892 - AluSx SINE Alu -11 301 1 1818 164 3 23 chr15 42966994 42967299 -42728455 - AluJb SINE Alu -13 299 1 2464 86 0 0 chr15 42967307 42967608 -42728146 - AluSp SINE Alu -12 301 1 2140 122 7 0 chr15 42968602 42968897 -42726857 + AluSg SINE Alu 2 298 -12 2294 112 0 3 chr15 42968994 42969299 -42726455 + AluSx SINE Alu 1 304 -8 24 32 0 0 chr15 42969414 42969445 -42726309 + AT_rich Low_complexity Low_complexity 1 31 0 846 118 0 52 chr15 42969579 42969715 -42726039 - FLAM_C SINE Alu -3 130 2 191 342 13 13 chr15 42969827 42969903 -42725851 - MIR3 SINE MIR -130 78 3 726 327 67 40 chr15 42971278 42971569 -42724185 - L3 LINE CR1 -9 1568 1257 1880 125 59 3 chr15 42971569 42971858 -42723896 - AluSx SINE Alu -6 306 2 726 327 67 40 chr15 42971858 42972061 -42723693 - L3 LINE CR1 -320 1257 1061 1564 145 3 74 chr15 42972440 42972723 -42723031 - AluSx SINE Alu -24 288 26 2137 133 7 0 chr15 42972857 42973151 -42722603 - AluSx SINE Alu -16 296 1 322 307 0 0 chr15 42973642 42973730 -42722024 + L2 LINE L2 3185 3272 0 2142 135 3 6 chr15 42973838 42974149 -42721605 - AluJb SINE Alu -2 310 1 2037 133 7 3 chr15 42974654 42974947 -42720807 + AluSx SINE Alu 1 294 -18 2157 124 0 0 chr15 42975102 42975384 -42720370 - AluSx SINE Alu -30 282 1 24 0 0 0 chr15 42979329 42979353 -42716401 + AT_rich Low_complexity Low_complexity 1 24 0 1861 159 30 3 chr15 42979819 42980120 -42715634 + AluJb SINE Alu 1 309 -3 405 255 39 0 chr15 42981299 42981401 -42714353 - MIR3 SINE MIR -41 167 62 1933 138 7 37 chr15 42981519 42981815 -42713939 - AluSx SINE Alu -25 287 1 409 179 48 0 chr15 42981817 42981901 -42713853 - AluJo/FLAM SINE Alu -182 130 43 393 211 22 0 chr15 42981908 42982000 -42713754 - AluSc SINE Alu -108 191 127 362 325 17 8 chr15 42982490 42982610 -42713144 - L2 LINE L2 -1 3271 3151 494 289 69 12 chr15 42982620 42982793 -42712961 + MER5A DNA MER1_type 1 183 -6 647 139 0 28 chr15 42982921 42983029 -42712725 + AluJb SINE Alu 198 302 -10 551 245 61 0 chr15 42983036 42983183 -42712571 + MIR SINE MIR 20 175 -87 1697 128 101 0 chr15 42983184 42983442 -42712312 - AluSx SINE Alu -13 299 16 2402 71 0 0 chr15 42983601 42983923 -42711831 + AluY SINE Alu 1 322 0 248 301 8 5 chr15 42984149 42984274 -42711480 - MER5A DNA MER1_type -1 188 1 1627 181 50 3 chr15 42984495 42984777 -42710977 - AluJb SINE Alu -17 295 1 1587 175 0 4 chr15 42985251 42985503 -42710251 - AluJb SINE Alu -21 291 41 1989 152 0 7 chr15 42985706 42986003 -42709751 + AluJo SINE Alu 1 295 -17 191 59 0 29 chr15 42986046 42986080 -42709674 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 627 137 10 10 chr15 42986152 42986254 -42709500 - FLAM_A SINE Alu -17 125 24 25 0 0 0 chr15 42986350 42986375 -42709379 + AT_rich Low_complexity Low_complexity 1 25 0 2550 55 13 0 chr15 42986890 42987197 -42708557 + AluY SINE Alu 1 311 0 2205 111 10 0 chr15 42987899 42988188 -42707566 - AluSx SINE Alu -20 292 1 1199 143 6 0 chr15 42988244 42988426 -42707328 - AluSg/x SINE Alu -6 306 124 2196 102 23 7 chr15 42988428 42988731 -42707023 - AluSq SINE Alu -5 308 1 1669 137 3 73 chr15 42988747 42989060 -42706694 - AluJb SINE Alu -21 291 1 1322 130 14 28 chr15 42989062 42989278 -42706476 + MER46A DNA MER2_type 24 236 0 359 338 56 19 chr15 42989534 42989677 -42706077 - MIR3 SINE MIR -17 191 40 1884 131 24 17 chr15 42989677 42989967 -42705787 + AluSx SINE Alu 1 292 -20 359 338 56 19 chr15 42989967 42989983 -42705771 - MIR3 SINE MIR -168 40 26 240 276 13 26 chr15 42990186 42990262 -42705492 - L2 LINE L2 -1 3271 3197 514 267 9 39 chr15 42990637 42990801 -42704953 - MIR3 SINE MIR -71 137 8 216 67 0 0 chr15 42990894 42990924 -42704830 + (T)n Simple_repeat Simple_repeat 1 30 0 261 0 0 0 chr15 42994023 42994052 -42701702 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 308 56 0 0 chr15 42994147 42994183 -42701571 + U2 snRNA snRNA 1 36 -152 1046 185 50 10 chr15 42995042 42995242 -42700512 - MER3 DNA MER1_type 0 209 2 1477 184 89 9 chr15 42995251 42995414 -42700340 - MER58B DNA MER1_type -2079 341 192 2102 97 38 0 chr15 42995414 42995704 -42700050 - AluSp SINE Alu -12 301 1 1477 184 89 9 chr15 42995704 42995856 -42699898 - MER58B DNA MER1_type -2228 192 1 213 39 0 0 chr15 42997368 42997394 -42698360 + (CGG)n Simple_repeat Simple_repeat 3 28 0 237 214 0 68 chr15 42997431 42997534 -42698220 + G-rich Low_complexity Low_complexity 4 99 0 215 276 5 83 chr15 42997633 42997825 -42697929 + G-rich Low_complexity Low_complexity 3 179 0 758 181 0 15 chr15 42999260 42999393 -42696361 + FLAM_C SINE Alu 3 133 0 873 138 8 0 chr15 42999744 42999867 -42695887 + FLAM_C SINE Alu 1 124 -19 1862 174 0 13 chr15 42999884 43000189 -42695565 + AluJb SINE Alu 1 301 -11 21 57 0 0 chr15 43002073 43002108 -42693646 + AT_rich Low_complexity Low_complexity 1 35 0 2111 120 3 0 chr15 43002135 43002452 -42693302 - AluSq SINE Alu 0 318 1 2495 88 0 0 chr15 43002605 43002911 -42692843 + AluSq SINE Alu 1 306 -7 2196 116 7 0 chr15 43004336 43004630 -42691124 + AluSc SINE Alu 1 296 -13 1097 151 6 34 chr15 43004781 43004960 -42690794 - AluJ SINE Alu -10 302 129 396 96 39 48 chr15 43004962 43005066 -42690688 + CT-rich Low_complexity Low_complexity 2 104 0 499 198 0 0 chr15 43005094 43005175 -42690579 - AluJo SINE Alu -18 294 214 229 148 131 66 chr15 43005176 43005237 -42690517 - AluJo SINE Alu -151 151 87 1040 181 0 117 chr15 43005238 43005487 -42690267 - AluJo SINE Alu -92 220 1 473 320 35 0 chr15 43005525 43005697 -42690057 + MIR3 SINE MIR 30 207 -1 1457 139 25 95 chr15 43005705 43005838 -42689916 + AluJb SINE Alu 14 155 -157 1490 123 5 0 chr15 43005838 43006041 -42689713 + AluSq SINE Alu 86 289 -24 1457 139 25 95 chr15 43006041 43006224 -42689530 + AluJb SINE Alu 155 308 -4 567 72 12 12 chr15 43006519 43006602 -42689152 + AluS SINE Alu 2 84 -228 1195 179 61 14 chr15 43006907 43007119 -42688635 - AluJb SINE Alu -90 222 1 2336 92 7 0 chr15 43007297 43007591 -42688163 - AluSg SINE Alu -14 296 1 1934 149 10 7 chr15 43007853 43008148 -42687606 + AluSx SINE Alu 3 298 -14 2130 101 7 26 chr15 43008346 43008654 -42687100 - AluSp SINE Alu -11 302 1 2229 112 0 6 chr15 43008672 43008984 -42686770 - AluSx SINE Alu -2 310 1 1632 161 71 0 chr15 43009357 43009637 -42686117 + AluJb SINE Alu 4 303 -9 2507 84 0 0 chr15 43009960 43010268 -42685486 - AluSg SINE Alu -2 308 1 2335 93 0 10 chr15 43010380 43010544 -42685210 - AluSx SINE Alu -15 297 136 2118 107 3 20 chr15 43010544 43010844 -42684910 - AluSg SINE Alu -15 295 1 2335 93 0 10 chr15 43010844 43010979 -42684775 - AluSx SINE Alu -176 136 1 2386 64 3 0 chr15 43010988 43011271 -42684483 - AluSp SINE Alu -16 297 14 182 244 67 0 chr15 43011394 43011439 -42684315 - L2 LINE L2 0 3272 3225 686 206 8 0 chr15 43011731 43011862 -42683892 - FLAM_A SINE Alu 0 133 2 207 0 0 0 chr15 43011869 43011892 -42683862 + (T)n Simple_repeat Simple_repeat 1 23 0 2300 70 20 17 chr15 43012164 43012462 -42683292 - AluSg SINE Alu -11 299 1 309 253 121 110 chr15 43012996 43013269 -42682485 - L2 LINE L2 -5 3308 3033 2518 75 0 0 chr15 43013904 43014211 -42681543 - AluY SINE Alu -4 307 1 2200 126 3 3 chr15 43014390 43014700 -42681054 - AluSx SINE Alu -2 310 1 381 22 0 0 chr15 43014926 43014972 -42680782 + (TG)n Simple_repeat Simple_repeat 2 47 0 890 208 0 6 chr15 43014975 43015134 -42680620 - FAM SINE Alu -16 159 2 2008 105 3 34 chr15 43015149 43015443 -42680311 - AluSx SINE Alu -19 293 9 2567 75 0 0 chr15 43016057 43016363 -42679391 - AluY SINE Alu -5 306 1 2307 99 0 16 chr15 43016409 43016712 -42679042 + AluSx SINE Alu 1 298 -14 2083 109 0 10 chr15 43016725 43017019 -42678735 + AluSx SINE Alu 1 291 -21 2324 87 10 0 chr15 43017024 43017322 -42678432 + AluSq SINE Alu 2 302 -11 2538 66 3 0 chr15 43018080 43018385 -42677369 - AluSp SINE Alu 0 313 8 2201 119 7 0 chr15 43018551 43018853 -42676901 - AluSg SINE Alu -6 304 1 650 187 187 16 chr15 43019675 43019857 -42675897 + MER46C DNA MER2_type 2 214 -124 2214 120 7 0 chr15 43019857 43020166 -42675588 - AluSp SINE Alu -2 311 1 1740 170 7 3 chr15 43020168 43020457 -42675297 - AluJo SINE Alu -21 291 2 473 227 0 23 chr15 43020522 43020610 -42675144 - FRAM/FAM SINE Alu -92 84 1 293 260 70 30 chr15 43020618 43020718 -42675036 - MIR SINE MIR -67 141 38 2489 77 0 0 chr15 43021167 43021466 -42674288 + AluSg SINE Alu 1 299 -11 2368 63 7 3 chr15 43021466 43021753 -42674001 + AluSc SINE Alu 1 288 -21 1666 161 39 73 chr15 43022223 43022293 -42673461 - L1MD2 LINE L1 -1 6358 6287 1479 188 35 14 chr15 43022293 43022575 -42673179 + AluJb SINE Alu 1 288 -24 1666 161 39 73 chr15 43022575 43022888 -42672866 - L1MD2 LINE L1 -72 6287 5988 2299 110 0 0 chr15 43023014 43023314 -42672440 + AluSx SINE Alu 1 300 -12 1524 178 62 4 chr15 43023395 43023671 -42672083 - AluSx SINE Alu -20 292 1 609 244 105 23 chr15 43023730 43023996 -42671758 - HAL1 LINE L1 -309 2198 1911 774 188 36 85 chr15 43024149 43024373 -42671381 - L1ME3 LINE L1 0 6162 5950 2371 87 0 16 chr15 43024395 43024705 -42671049 - AluSg SINE Alu -5 305 1 278 296 0 61 chr15 43025160 43025258 -42670496 - L2 LINE L2 -48 3224 3133 1466 151 0 103 chr15 43025585 43025896 -42669858 + AluJo SINE Alu 24 302 -10 2280 102 13 0 chr15 43025941 43026246 -42669508 - AluSg SINE Alu 0 310 2 2361 88 7 0 chr15 43026296 43026593 -42669161 - AluSx SINE Alu -13 299 1 1802 164 3 23 chr15 43026726 43027031 -42668723 - AluJb SINE Alu -13 299 1 2476 83 0 0 chr15 43027036 43027338 -42668416 - AluSp SINE Alu -11 302 1 2115 122 7 0 chr15 43028332 43028627 -42667127 + AluSg SINE Alu 2 298 -12 2276 112 0 3 chr15 43028724 43029029 -42666725 + AluSx SINE Alu 1 304 -8 24 32 0 0 chr15 43029144 43029175 -42666579 + AT_rich Low_complexity Low_complexity 1 31 0 884 84 0 53 chr15 43029300 43029431 -42666323 - FLAM_C SINE Alu -4 139 16 218 325 12 36 chr15 43029549 43029632 -42666122 - MIR3 SINE MIR -125 83 3 862 327 67 40 chr15 43031007 43031298 -42664456 - L3 LINE CR1 -9 1568 1257 1869 125 59 3 chr15 43031298 43031587 -42664167 - AluSx SINE Alu -6 306 2 862 327 67 40 chr15 43031587 43031790 -42663964 - L3 LINE CR1 -320 1257 1061 1503 165 4 35 chr15 43032168 43032423 -42663331 - AluSx SINE Alu -24 288 42 2114 133 10 0 chr15 43032584 43032877 -42662877 - AluSx SINE Alu -16 296 1 351 307 0 0 chr15 43033368 43033456 -42662298 + L2 LINE L2 3185 3272 0 2125 135 3 6 chr15 43033564 43033875 -42661879 - AluJb SINE Alu -2 310 1 2018 130 7 3 chr15 43034380 43034672 -42661082 + AluSx SINE Alu 1 293 -19 2200 125 0 0 chr15 43035007 43035304 -42660450 + AluSx SINE Alu 1 297 -15 1886 149 17 17 chr15 43035306 43035602 -42660152 + AluSg SINE Alu 1 296 -14 344 191 73 0 chr15 43035613 43035681 -42660073 + MIR SINE MIR 182 254 -8 24 0 0 0 chr15 43036741 43036765 -42658989 + AT_rich Low_complexity Low_complexity 1 24 0 518 226 18 101 chr15 43037457 43037551 -42658203 + MER5A DNA MER1_type 35 111 -78 2094 145 0 19 chr15 43037551 43037862 -42657892 - AluJb SINE Alu -7 305 1 518 226 18 101 chr15 43037862 43037935 -42657819 + MER5A DNA MER1_type 111 188 -1 626 182 21 35 chr15 43038150 43038293 -42657461 + MIR SINE MIR 119 259 -3 641 158 0 42 chr15 43038797 43038917 -42656837 + Tigger7 DNA MER2_type 3 117 -588 1624 175 43 28 chr15 43038919 43039064 -42656690 + Tigger7 DNA MER2_type 2256 2397 -190 1803 166 3 13 chr15 43039064 43039371 -42656383 - AluJo SINE Alu -4 308 5 1624 175 43 28 chr15 43039371 43039551 -42656203 + Tigger7 DNA MER2_type 2397 2586 -1 201 27 0 81 chr15 43039800 43039837 -42655917 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 2293 93 0 29 chr15 43040058 43040368 -42655386 + AluSq SINE Alu 1 301 -12 189 279 127 76 chr15 43040485 43040582 -42655172 + MER5B DNA MER1_type 12 121 -57 2449 74 0 0 chr15 43040582 43040880 -42654874 - AluSg SINE Alu -12 298 1 189 279 127 76 chr15 43040880 43040940 -42654814 + MER5B DNA MER1_type 121 177 -1 22 35 0 0 chr15 43041522 43041551 -42654203 + AT_rich Low_complexity Low_complexity 1 29 0 628 130 0 10 chr15 43041708 43041808 -42653946 - L1PA15 LINE L1 -21 6144 6046 47 0 0 0 chr15 43041883 43041930 -42653824 + AT_rich Low_complexity Low_complexity 1 47 0 1842 162 14 3 chr15 43042677 43042973 -42652781 + AluJo SINE Alu 1 299 -13 1854 144 10 7 chr15 43043509 43043800 -42651954 - AluSx SINE Alu -16 296 5 21 0 0 0 chr15 43043804 43043825 -42651929 + AT_rich Low_complexity Low_complexity 1 21 0 2345 95 0 3 chr15 43044522 43044826 -42650928 + AluSq SINE Alu 1 303 -10 28 0 0 0 chr15 43045142 43045170 -42650584 + AT_rich Low_complexity Low_complexity 1 28 0 1988 139 3 19 chr15 43045230 43045540 -42650214 - AluSx SINE Alu -3 309 5 23 33 0 0 chr15 43045600 43045630 -42650124 + AT_rich Low_complexity Low_complexity 1 30 0 2037 146 0 3 chr15 43045961 43046262 -42649492 + AluSx SINE Alu 1 300 -12 362 295 18 27 chr15 43046376 43046456 -42649298 - L2 LINE L2 0 3272 3192 783 183 16 0 chr15 43046456 43046582 -42649172 + FLAM_A SINE Alu 1 128 -5 362 295 18 27 chr15 43046582 43046613 -42649141 - L2 LINE L2 -80 3192 3162 42 36 0 0 chr15 43046619 43046675 -42649079 + AT_rich Low_complexity Low_complexity 1 56 0 1661 154 4 11 chr15 43046677 43046943 -42648811 - AluJb SINE Alu -42 270 7 787 317 89 28 chr15 43047117 43047782 -42647972 - L2 LINE L2 -243 3029 2325 290 291 78 10 chr15 43047782 43047885 -42647869 - L2 LINE L2 -46 3226 3117 200 108 0 27 chr15 43047973 43048010 -42647744 + (CGGGGG)n Simple_repeat Simple_repeat 5 40 0 232 316 111 53 chr15 43048095 43048285 -42647469 - L2 LINE L2 -995 2319 2119 319 248 99 58 chr15 43048633 43048754 -42647000 + MIR SINE MIR 6 131 -131 780 202 112 6 chr15 43049058 43049236 -42646518 - MER20 DNA MER1_type 0 219 23 364 226 35 26 chr15 43049264 43049379 -42646375 + L1ME3A LINE L1 6055 6170 0 202 277 0 0 chr15 43050323 43050370 -42645384 + CT-rich Low_complexity Low_complexity 4 50 0 235 211 56 14 chr15 43051101 43051172 -42644582 - L1ME4a LINE L1 -30 6091 6018 2035 120 38 0 chr15 43052361 43052652 -42643102 + AluSg SINE Alu 1 302 -8 3979 155 112 24 chr15 43052913 43053151 -42642603 - L1MB7 LINE L1 -19 6165 5949 2410 88 0 0 chr15 43053151 43053446 -42642308 + AluSg SINE Alu 1 295 -15 3979 155 112 24 chr15 43053446 43054052 -42641702 - L1MB7 LINE L1 -235 5949 5253 4336 193 15 75 chr15 43054053 43054651 -42641103 - L1MB7 LINE L1 -1101 5045 4544 1930 150 0 20 chr15 43054651 43054957 -42640797 - AluSx SINE Alu -12 300 1 4336 193 15 75 chr15 43054957 43055483 -42640271 - L1MB7 LINE L1 -1602 4544 3988 1729 126 3 114 chr15 43055484 43055818 -42639936 - AluJb SINE Alu -15 297 1 198 319 96 32 chr15 43055945 43056039 -42639715 + MIR SINE MIR 23 122 -86 433 343 59 43 chr15 43056373 43056796 -42638958 + L2 LINE L2 2228 2657 -657 237 318 0 15 chr15 43056905 43056971 -42638783 + MIR SINE MIR 3 67 -195 1874 77 0 4 chr15 43056972 43057207 -42638547 - AluSg SINE Alu -19 291 58 237 33 0 0 chr15 43057249 43057279 -42638475 + (TTA)n Simple_repeat Simple_repeat 1 30 0 224 175 35 0 chr15 43057280 43057337 -42638417 + (TTTG)n Simple_repeat Simple_repeat 1 59 0 2283 87 3 3 chr15 43058609 43058898 -42636856 - AluSp SINE Alu -24 289 1 1868 114 23 4 chr15 43058914 43059177 -42636577 - AluSx SINE Alu -44 268 1 491 209 108 23 chr15 43059178 43059307 -42636447 + MIR SINE MIR 56 195 -67 1741 156 14 7 chr15 43060281 43060564 -42635190 - AluJo SINE Alu -27 285 1 330 267 48 29 chr15 43060584 43060689 -42635065 + MIR3 SINE MIR 87 193 -15 823 258 159 41 chr15 43060723 43061241 -42634513 + L2 LINE L2 2650 3256 -57 180 77 0 0 chr15 43061241 43061267 -42634487 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 823 258 159 41 chr15 43061267 43061333 -42634421 + L2 LINE L2 3256 3313 0 1662 255 100 68 chr15 43061404 43061924 -42633830 - HAL1 LINE L1 -1604 903 346 1970 139 3 3 chr15 43061924 43062218 -42633536 - AluJb SINE Alu -18 294 1 1662 255 100 68 chr15 43062218 43062518 -42633236 - HAL1 LINE L1 -2161 346 57 1248 221 47 0 chr15 43062572 43062870 -42632884 - L1MD2 LINE L1 -4 6355 6044 2377 84 3 0 chr15 43062880 43063176 -42632578 - AluSp SINE Alu -15 298 2 2413 60 0 10 chr15 43063180 43063480 -42632274 - AluY SINE Alu -14 297 1 2357 90 0 3 chr15 43063578 43063879 -42631875 - AluSg SINE Alu -10 300 1 1238 109 11 16 chr15 43063913 43064096 -42631658 - AluSx SINE Alu -130 182 1 1691 149 0 8 chr15 43064107 43064362 -42631392 - AluJb SINE Alu -25 287 35 2191 125 3 0 chr15 43064367 43064664 -42631090 - AluSx SINE Alu -14 298 1 4475 203 59 70 chr15 43064676 43064812 -42630942 + L1M4 LINE L1 3743 3879 -2267 1568 140 19 72 chr15 43064812 43065119 -42630635 - AluJb SINE Alu -21 291 1 4475 203 59 70 chr15 43065119 43065581 -42630173 + L1M4 LINE L1 3879 4345 -1801 2425 94 0 0 chr15 43065581 43065889 -42629865 + AluY SINE Alu 1 308 -3 4475 203 59 70 chr15 43065889 43066530 -42629224 + L1M4 LINE L1 4345 4992 -1154 1433 194 14 10 chr15 43066530 43066818 -42628936 + AluJo SINE Alu 1 289 -23 656 155 0 0 chr15 43066727 43066824 -42628930 + AluJo/FRAM SINE Alu 199 295 -17 * 1740 154 61 0 chr15 43066825 43067118 -42628636 + AluSx SINE Alu 1 311 -1 4475 203 59 70 chr15 43067118 43067406 -42628348 + L1M4 LINE L1 4998 5263 -883 2262 105 3 10 chr15 43067616 43067930 -42627824 + AluSx SINE Alu 1 312 0 196 261 85 137 chr15 43067935 43068088 -42627666 - L2 LINE L2 -299 2973 2829 1902 51 0 21 chr15 43068184 43068421 -42627333 - L1PA8 LINE L1 -2 6170 5939 381 342 112 20 chr15 43068467 43068771 -42626983 - L2 LINE L2 -610 2704 2373 21 57 0 0 chr15 43068799 43068834 -42626920 + AT_rich Low_complexity Low_complexity 1 35 0 703 195 0 17 chr15 43069240 43069358 -42626396 - FLAM_A SINE Alu -17 116 1 2070 120 3 23 chr15 43069598 43069899 -42625855 + AluSx SINE Alu 1 295 -17 1367 186 50 4 chr15 43069924 43070182 -42625572 - AluJo SINE Alu -29 283 14 3453 138 26 23 chr15 43070188 43070804 -42624950 - L1MD1 LINE L1 -308 5934 5317 22 56 0 0 chr15 43070804 43070840 -42624914 + AT_rich Low_complexity Low_complexity 1 36 0 1399 184 86 4 chr15 43070901 43071168 -42624586 - AluJo SINE Alu -23 289 1 469 219 109 22 chr15 43071213 43071350 -42624404 + LTR67 LTR ERVL 409 557 0 1826 122 0 93 chr15 43071441 43071785 -42623969 + AluJb SINE Alu 1 312 0 2084 102 7 0 chr15 43071785 43072059 -42623695 + AluSx SINE Alu 1 276 -36 2454 80 0 13 chr15 43072059 43072373 -42623381 + AluSp SINE Alu 2 311 -2 313 136 119 0 chr15 43072558 43072617 -42623137 - MER106A DNA MER1_type -115 121 56 2376 73 3 29 chr15 43072657 43072973 -42622781 + AluSp SINE Alu 1 308 -5 2269 102 7 0 chr15 43073376 43073680 -42622074 - AluSp SINE Alu -1 312 7 1470 168 0 51 chr15 43073716 43073853 -42621901 - AluJo SINE Alu -52 260 118 2125 103 0 33 chr15 43073853 43074005 -42621749 - AluSx SINE Alu -20 292 137 405 0 0 0 chr15 43074005 43074050 -42621704 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 2419 68 3 0 chr15 43074051 43074347 -42621407 - AluY SINE Alu -14 297 1 2123 99 32 0 chr15 43074349 43074633 -42621121 - AluSg SINE Alu -17 293 1 2125 103 0 33 chr15 43074633 43074777 -42620977 - AluSx SINE Alu -176 136 1 1470 168 0 51 chr15 43074777 43074913 -42620841 - AluJo SINE Alu -194 118 1 2534 50 7 3 chr15 43075204 43075506 -42620248 - AluY SINE Alu -8 303 1 552 191 0 32 chr15 43075521 43075615 -42620139 - AluJb SINE Alu -35 277 187 830 92 18 0 chr15 43075616 43075725 -42620029 + AluSp SINE Alu 1 111 -202 274 179 18 18 chr15 43075725 43075781 -42619973 - AluS SINE Alu -204 99 44 256 244 18 134 chr15 43075903 43076067 -42619687 + L2 LINE L2 3169 3313 0 192 310 46 58 chr15 43076232 43076319 -42619435 - L2 LINE L2 -12 3260 3175 2029 122 18 43 chr15 43076925 43077252 -42618502 - MER1B DNA MER1_type 0 339 21 2573 56 0 3 chr15 43077304 43077607 -42618147 - AluSp SINE Alu -11 302 1 1048 225 14 0 chr15 43077607 43077816 -42617938 + AluJb SINE Alu 101 312 0 2122 127 0 0 chr15 43078316 43078607 -42617147 - AluSx SINE Alu -21 291 1 24 0 0 0 chr15 43082552 43082576 -42613178 + AT_rich Low_complexity Low_complexity 1 24 0 1855 159 30 3 chr15 43083042 43083344 -42612410 + AluJb SINE Alu 1 310 -2 439 255 39 0 chr15 43084523 43084625 -42611129 - MIR3 SINE MIR -41 167 62 1908 138 7 37 chr15 43084743 43085039 -42610715 - AluSx SINE Alu -25 287 1 439 179 48 0 chr15 43085041 43085125 -42610629 - AluJo/FLAM SINE Alu -182 130 43 389 211 22 0 chr15 43085132 43085224 -42610530 - FRAM/FAM SINE Alu -109 57 1 400 325 17 8 chr15 43085713 43085833 -42609921 - L2 LINE L2 -1 3271 3151 549 278 69 12 chr15 43085843 43086016 -42609738 + MER5A DNA MER1_type 1 183 -6 717 130 0 28 chr15 43086144 43086252 -42609502 + AluJb SINE Alu 198 302 -10 601 245 61 0 chr15 43086259 43086406 -42609348 + MIR SINE MIR 20 175 -87 1741 139 95 0 chr15 43086407 43086680 -42609074 - AluSx SINE Alu -13 299 1 2059 122 7 3 chr15 43086909 43087197 -42608557 + AluSx SINE Alu 1 289 -23 1796 177 0 3 chr15 43088050 43088350 -42607404 - AluJb SINE Alu -13 299 1 2827 240 34 21 chr15 43088388 43089097 -42606657 - L1ME1 LINE L1 -26 6140 5423 1096 163 0 0 chr15 43089097 43089263 -42606491 - AluJb SINE Alu -13 299 134 240 197 33 0 chr15 43089282 43089343 -42606411 - AluSc SINE Alu 0 299 237 1427 210 0 11 chr15 43089354 43089626 -42606128 - AluJb SINE Alu -43 269 1 2495 76 0 0 chr15 43089637 43089941 -42605813 - AluY SINE Alu -7 304 1 400 242 97 6 chr15 43089942 43090107 -42605647 - L1ME1 LINE L1 -1732 4414 4235 464 230 49 115 chr15 43090527 43090753 -42605001 - L2 LINE L2 -21 3292 3082 1590 200 23 26 chr15 43091329 43091639 -42604115 + AluJb SINE Alu 1 309 -3 188 33 0 33 chr15 43092024 43092054 -42603700 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 1813 101 76 22 chr15 43092054 43092321 -42603433 - AluSp SINE Alu -23 290 6 869 198 80 16 chr15 43092324 43092511 -42603243 - MIR SINE MIR -42 220 22 218 184 0 0 chr15 43092525 43092563 -42603191 + GA-rich Low_complexity Low_complexity 1 38 0 836 263 0 0 chr15 43092645 43092803 -42602951 - AluJb SINE Alu -21 291 131 1665 152 43 23 chr15 43092803 43093105 -42602649 - AluJb SINE Alu -4 308 1 836 263 0 0 chr15 43093105 43093125 -42602629 - AluJb SINE Alu -180 132 113 1292 182 89 79 chr15 43093125 43093163 -42602591 - L1M4 LINE L1 -801 5345 5309 321 26 0 0 chr15 43093163 43093201 -42602553 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1292 182 89 79 chr15 43093201 43093262 -42602492 - L1M4 LINE L1 -837 5309 5250 878 148 0 63 chr15 43093262 43093404 -42602350 + FLAM_C SINE Alu 1 133 0 1292 182 89 79 chr15 43093404 43093415 -42602339 - L1M4 LINE L1 -896 5250 5241 2045 132 37 0 chr15 43093415 43093710 -42602044 + AluSx SINE Alu 1 306 -6 1292 182 89 79 chr15 43093710 43093936 -42601818 - L1M4 LINE L1 -905 5241 5000 698 208 23 8 chr15 43093936 43094066 -42601688 - FLAM_A SINE Alu -1 132 1 1292 182 89 79 chr15 43094066 43094117 -42601637 - L1M4 LINE L1 -1146 5000 4951 2443 67 13 0 chr15 43094228 43094527 -42601227 + AluSp SINE Alu 6 308 -5 578 212 45 15 chr15 43094532 43094664 -42601090 - Tigger1 DNA MER2_type -2031 387 252 1485 90 5 0 chr15 43094664 43094852 -42600902 + AluSg/x SINE Alu 109 297 -13 4753 202 54 65 chr15 43094854 43095210 -42600544 - L1M LINE L1 -825 5321 4963 1740 154 61 0 chr15 43095210 43095503 -42600251 - AluSx SINE Alu -1 311 1 1654 174 10 7 chr15 43095510 43095798 -42599956 - AluJo SINE Alu -23 289 1 4753 202 54 65 chr15 43095798 43096439 -42599315 - L1M LINE L1 -1189 4957 4311 2425 94 0 0 chr15 43096439 43096747 -42599007 - AluY SINE Alu -3 308 1 4753 202 54 65 chr15 43096747 43097209 -42598545 - L1M LINE L1 -1835 4311 3879 1568 140 19 72 chr15 43097209 43097516 -42598238 + AluJb SINE Alu 1 291 -21 4753 202 54 65 chr15 43097516 43097652 -42598102 - L1M LINE L1 -2267 3879 3743 2199 124 3 0 chr15 43097664 43097962 -42597792 + AluSx SINE Alu 1 299 -13 1668 153 0 8 chr15 43097967 43098222 -42597532 + AluJb SINE Alu 35 287 -25 1269 114 5 16 chr15 43098233 43098417 -42597337 + AluSx SINE Alu 1 182 -130 2386 98 0 16 chr15 43098452 43098767 -42596987 + AluSg SINE Alu 1 310 0 1783 157 7 17 chr15 43098841 43099134 -42596620 - AluJo SINE Alu -11 301 12 814 143 0 8 chr15 43099156 43099282 -42596472 - FLAM_C SINE Alu -18 125 1 403 241 113 45 chr15 43099282 43099415 -42596339 - MIR SINE MIR -21 241 100 2256 47 43 0 chr15 43100555 43100832 -42594922 - AluY SINE Alu -22 289 1 763 248 63 0 chr15 43101137 43101343 -42594411 + MIR SINE MIR 44 262 0 191 353 20 80 chr15 43101342 43101492 -42594262 + L2 LINE L2 2987 3127 -145 * 203 184 0 0 chr15 43101549 43101587 -42594167 + L2 LINE L2 3265 3302 -11 250 352 109 16 chr15 43102373 43102501 -42593253 - L2 LINE L2 -16 3256 3117 297 184 357 10 chr15 43102519 43102617 -42593137 + L2 LINE L2 3182 3313 0 2265 90 0 7 chr15 43102905 43103193 -42592561 - AluSc SINE Alu -22 287 2 287 310 210 15 chr15 43103771 43104219 -42591535 + L2 LINE L2 2717 3259 -54 839 137 0 58 chr15 43104403 43104542 -42591212 - FLAM_C SINE Alu 0 133 3 238 311 59 25 chr15 43105208 43105327 -42590427 - MIR SINE MIR -131 131 9 273 29 0 0 chr15 43105718 43105752 -42590002 + (TG)n Simple_repeat Simple_repeat 2 35 0 1116 146 6 0 chr15 43105840 43106004 -42589750 + AluJb SINE Alu 138 302 -10 1988 157 0 0 chr15 43106011 43106304 -42589450 + AluJb SINE Alu 3 295 -17 2065 93 14 4 chr15 43106335 43106649 -42589105 + AluSp SINE Alu 1 317 0 1190 112 0 6 chr15 43106725 43106894 -42588860 - AluSg/x SINE Alu -16 296 129 732 239 0 38 chr15 43106894 43107053 -42588701 + Tigger7 DNA MER2_type 115 267 -2220 560 157 0 49 chr15 43107051 43107153 -42588601 + Tigger7 DNA MER2_type 2491 2587 0 * 1604 66 0 5 chr15 43107682 43107880 -42587874 - AluY SINE Alu -9 302 106 2205 103 23 23 chr15 43107880 43108070 -42587684 - AluSx SINE Alu -2 310 118 342 45 0 0 chr15 43108070 43108114 -42587640 + (TTA)n Simple_repeat Simple_repeat 1 44 0 2205 103 23 23 chr15 43108114 43108233 -42587521 - AluSx SINE Alu -193 119 1 1829 172 0 3 chr15 43108686 43109002 -42586752 - AluJo SINE Alu 0 315 1 888 189 0 0 chr15 43109034 43109187 -42586567 + FRAM SINE Alu 1 151 -25 2302 85 7 3 chr15 43110056 43110351 -42585403 + AluSc SINE Alu 1 296 -13 2075 113 0 3 chr15 43110504 43110814 -42584940 - AluY SINE Alu 0 309 1 587 251 110 10 chr15 43110837 43111100 -42584654 - L1MC4 LINE L1 -1 8041 7636 877 214 17 28 chr15 43111276 43111454 -42584300 + MER5B DNA MER1_type 1 176 -2 251 296 37 25 chr15 43111572 43111653 -42584101 - L2 LINE L2 -5 3267 3186 243 337 20 20 chr15 43111674 43111775 -42583979 + MIR SINE MIR 20 120 -142 909 304 85 31 chr15 43111778 43112259 -42583495 + L2 LINE L2 2806 3312 -1 303 284 68 88 chr15 43112844 43112873 -42582881 - MIR SINE MIR -81 181 153 842 144 0 50 chr15 43112873 43113012 -42582742 - FLAM_C SINE Alu 0 133 2 303 284 68 88 chr15 43113012 43113130 -42582624 - MIR SINE MIR -109 153 37 2275 91 0 0 chr15 43113597 43113883 -42581871 + AluSx SINE Alu 1 286 -26 273 218 0 0 chr15 43114233 43114288 -42581466 + MIR SINE MIR 182 236 -26 232 104 0 90 chr15 43114308 43114375 -42581379 + (TTTTTA)n Simple_repeat Simple_repeat 2 62 0 386 198 243 0 chr15 43114392 43114503 -42581251 - MIR SINE MIR -75 187 50 1626 117 59 44 chr15 43114525 43114798 -42580956 - AluSx SINE Alu -22 290 14 329 307 56 39 chr15 43114844 43115023 -42580731 - L2 LINE L2 -240 3073 2892 241 213 0 0 chr15 43115020 43115067 -42580687 + L2 LINE L2 3023 3069 -244 * 1083 212 28 5 chr15 43115069 43115281 -42580473 + AluJb SINE Alu 1 217 -95 529 220 78 7 chr15 43115282 43115415 -42580339 + L2 LINE L2 3107 3249 -64 475 376 48 16 chr15 43115415 43115465 -42580289 - MER91A DNA MER1_type 0 196 149 2207 102 3 29 chr15 43115465 43115780 -42579974 + AluSp SINE Alu 2 308 -5 475 376 48 16 chr15 43115780 43115918 -42579836 - MER91A DNA MER1_type -47 149 2 268 271 29 0 chr15 43115922 43115992 -42579762 + L2 LINE L2 3242 3313 0 2382 69 9 38 chr15 43116199 43116518 -42579236 - AluY SINE Alu -1 310 1 1859 108 24 0 chr15 43118034 43118285 -42577469 + AluSp SINE Alu 45 301 -12 2371 67 0 0 chr15 43118667 43118951 -42576803 + AluY SINE Alu 1 284 -27 281 241 121 9 chr15 43119357 43119473 -42576281 + HAL1 LINE L1 1642 1770 -737 949 134 0 108 chr15 43119503 43119689 -42576065 + AluSg/x SINE Alu 134 299 -10 285 128 0 0 chr15 43119715 43119762 -42575992 + (TA)n Simple_repeat Simple_repeat 1 47 0 1171 114 0 0 chr15 43119773 43119931 -42575823 + AluSq SINE Alu 137 294 -19 749 166 7 43 chr15 43119940 43120079 -42575675 + FLAM_C SINE Alu 7 140 -3 371 141 44 0 chr15 43120197 43120292 -42575462 - AluS SINE Alu -20 280 220 2243 110 3 0 chr15 43120473 43120773 -42574981 + AluSg SINE Alu 1 301 -9 1657 193 0 10 chr15 43120777 43121078 -42574676 + AluJo SINE Alu 1 298 -14 247 237 140 0 chr15 43121113 43121227 -42574527 - L1M4c LINE L1 -3991 2655 2526 941 168 7 0 chr15 43121340 43121489 -42574265 + AluJb SINE Alu 152 301 -11 1638 147 50 11 chr15 43121503 43121782 -42573972 + AluSx SINE Alu 13 302 -10 2352 186 52 22 chr15 43121970 43122428 -42573326 + MLT1D LTR MaLR 4 475 -30 851 184 24 58 chr15 43122470 43122599 -42573155 - L1M4c LINE L1 -4571 2075 1954 2008 126 61 0 chr15 43122599 43122893 -42572861 - AluSx SINE Alu 0 312 1 851 184 24 58 chr15 43122893 43122969 -42572785 - L1M4c LINE L1 -4692 1954 1877 308 43 43 0 chr15 43123024 43123071 -42572683 - AluY SINE Alu 0 302 254 778 201 29 23 chr15 43123073 43123247 -42572507 - FAM SINE Alu -10 175 1 2325 176 108 108 chr15 43123248 43123971 -42571783 - L1M4c LINE L1 -5809 733 11 841 222 5 19 chr15 43123978 43124185 -42571569 + L2 LINE L2 607 810 -2504 858 221 35 0 chr15 43124202 43124374 -42571380 + MER58A DNA MER1_type 47 224 0 422 310 282 5 chr15 43124374 43124764 -42570990 + L2 LINE L2 802 1299 -2015 1402 98 13 60 chr15 43124768 43124809 -42570945 - AluSg/x SINE Alu 0 309 268 2545 70 0 0 chr15 43124809 43125110 -42570644 - AluY SINE Alu -10 301 1 1402 98 13 60 chr15 43125110 43125302 -42570452 - AluSg/x SINE Alu -41 268 87 752 120 8 0 chr15 43125302 43125419 -42570335 + AluY SINE Alu 184 301 -10 418 325 21 11 chr15 43125443 43125631 -42570123 - HAL1 LINE L1 -1681 826 637 668 254 106 91 chr15 43125699 43126163 -42569591 - HAL1 LINE L1 -1989 518 48 566 157 0 0 chr15 43126258 43126347 -42569407 + FLAM_C SINE Alu 30 118 -25 1480 143 127 27 chr15 43126352 43126653 -42569101 - AluSx SINE Alu 0 327 1 1541 103 15 0 chr15 43126681 43126885 -42568869 - AluSq SINE Alu -9 304 98 653 154 10 0 chr15 43126996 43127100 -42568654 - AluJb SINE Alu -207 105 1 696 129 0 107 chr15 43127200 43127243 -42568511 - FLAM_C SINE Alu -186 126 80 2258 92 0 3 chr15 43127243 43127549 -42568205 - AluSc SINE Alu 0 305 1 696 129 0 107 chr15 43127549 43127644 -42568110 - FLAM_C SINE Alu -232 80 2 262 205 26 0 chr15 43127993 43128071 -42567683 + (TA)n Simple_repeat Simple_repeat 2 81 0 1796 164 11 7 chr15 43128090 43128377 -42567377 + AluSx SINE Alu 11 298 -14 562 324 32 9 chr15 43129074 43129293 -42566461 + MIR SINE MIR 11 234 -28 180 0 0 0 chr15 43129302 43129322 -42566432 + (CTG)n Simple_repeat Simple_repeat 1 20 0 1906 128 42 21 chr15 43129758 43130047 -42565707 + AluSp SINE Alu 4 298 -15 807 189 0 0 chr15 43130054 43130197 -42565557 + FLAM_C SINE Alu 1 143 0 418 179 0 0 chr15 43130243 43130321 -42565433 - AluS SINE Alu -2 310 233 956 181 44 58 chr15 43130422 43130473 -42565281 + AluJb SINE Alu 78 128 -184 1971 109 53 7 chr15 43130473 43130757 -42564997 - AluSx SINE Alu -15 297 1 956 181 44 58 chr15 43130757 43130931 -42564823 + AluJb SINE Alu 128 300 -12 271 263 26 0 chr15 43130942 43131018 -42564736 + L1MC/D LINE L1 5703 5780 -2028 1886 156 7 3 chr15 43131043 43131331 -42564423 + AluSx SINE Alu 1 289 -23 1722 142 39 39 chr15 43131380 43131690 -42564064 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr15 43132138 43132161 -42563593 + AT_rich Low_complexity Low_complexity 1 23 0 1828 154 31 10 chr15 43132274 43132567 -42563187 - AluJb SINE Alu -13 299 1 1911 159 0 17 chr15 43133082 43133384 -42562370 - AluSx SINE Alu -15 297 1 717 259 82 62 chr15 43133427 43133491 -42562263 + MLT1K LTR MaLR 230 291 -297 2357 38 108 0 chr15 43133491 43133778 -42561976 + AluYb8 SINE Alu 1 318 0 717 259 82 62 chr15 43133778 43133824 -42561930 + MLT1K LTR MaLR 291 335 -253 2372 96 0 3 chr15 43133824 43134126 -42561628 + AluSx SINE Alu 1 301 -11 717 259 82 62 chr15 43134126 43134366 -42561388 + MLT1K LTR MaLR 335 588 0 346 294 160 0 chr15 43134370 43134489 -42561265 - MIR3 SINE MIR -37 171 34 2087 125 0 10 chr15 43134900 43135196 -42560558 - AluSg SINE Alu -13 297 5 481 289 27 0 chr15 43135197 43135346 -42560408 + L2 LINE L2 2908 3060 -253 216 289 36 36 chr15 43135440 43135523 -42560231 + L2 LINE L2 3183 3265 -7 1949 150 7 3 chr15 43136868 43137162 -42558592 - AluSx SINE Alu -17 295 1 26 30 0 0 chr15 43137216 43137249 -42558505 + AT_rich Low_complexity Low_complexity 1 33 0 466 229 122 86 chr15 43137389 43137489 -42558265 - L1MC/D LINE L1 -2056 5752 5657 405 0 0 0 chr15 43137489 43137534 -42558220 + (TA)n Simple_repeat Simple_repeat 1 45 0 466 229 122 86 chr15 43137534 43137770 -42557984 - L1MC/D LINE L1 -2151 5657 5404 252 0 0 0 chr15 43137915 43137943 -42557811 + (T)n Simple_repeat Simple_repeat 1 28 0 474 250 24 8 chr15 43138071 43138195 -42557559 + L2 LINE L2 3184 3309 -4 378 333 78 0 chr15 43138506 43138659 -42557095 + L2 LINE L2 2850 3014 -258 1633 162 20 40 chr15 43138787 43138915 -42556839 + AluSg SINE Alu 1 130 -180 2495 77 0 0 chr15 43138915 43139226 -42556528 + AluY SINE Alu 1 311 0 1633 162 20 40 chr15 43139226 43139400 -42556354 + AluSg SINE Alu 130 297 -13 245 182 0 15 chr15 43139402 43139468 -42556286 + GA-rich Low_complexity Low_complexity 4 68 0 25 31 0 0 chr15 43139882 43139914 -42555840 + AT_rich Low_complexity Low_complexity 1 32 0 385 325 73 5 chr15 43140013 43140204 -42555550 - MIR SINE MIR -12 250 47 234 322 11 44 chr15 43140485 43140575 -42555179 + L3 LINE CR1 205 291 -1286 546 295 98 4 chr15 43140618 43140852 -42554902 + MIR SINE MIR 3 258 -4 597 294 43 30 chr15 43141035 43141270 -42554484 + MIR SINE MIR 24 261 -1 2410 70 0 55 chr15 43141457 43141785 -42553969 - AluY SINE Alu 0 311 2 2181 114 10 3 chr15 43142012 43142310 -42553444 - AluSq SINE Alu -13 300 1 2248 100 3 3 chr15 43142460 43142761 -42552993 + AluSg1 SINE Alu 1 301 -8 832 289 95 27 chr15 43142994 43143361 -42552393 + L3 LINE CR1 312 703 -874 649 260 109 57 chr15 43143361 43143534 -42552220 - MLT1K LTR MaLR 0 588 394 2328 84 0 0 chr15 43143534 43143871 -42551883 - AluY SINE Alu 0 337 1 649 260 109 57 chr15 43143871 43143961 -42551793 - MLT1K LTR MaLR -194 394 310 505 273 45 45 chr15 43144261 43144459 -42551295 - MIR SINE MIR -8 254 57 2443 64 0 58 chr15 43144463 43144793 -42550961 - AluY SINE Alu 0 311 1 1506 176 32 35 chr15 43144861 43145027 -42550727 - AluJo SINE Alu -21 291 125 2183 98 41 3 chr15 43145027 43145322 -42550432 + AluSg SINE Alu 1 306 -4 1506 176 32 35 chr15 43145322 43145439 -42550315 - AluJo SINE Alu -187 125 9 920 77 43 0 chr15 43145481 43145598 -42550156 + AluSq/x SINE Alu 25 146 -167 2259 82 4 4 chr15 43145598 43145878 -42549876 + AluSp SINE Alu 1 280 -33 327 34 17 34 chr15 43145879 43145938 -42549816 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 526 177 159 129 chr15 43145941 43146238 -42549516 + Charlie1 DNA MER1_type 2268 2555 -206 2228 119 0 0 chr15 43146238 43146541 -42549213 - AluSq SINE Alu -10 303 1 526 177 159 129 chr15 43146541 43146589 -42549165 + Charlie1 DNA MER1_type 2555 2600 -161 2305 116 7 0 chr15 43146589 43146899 -42548855 - AluSx SINE Alu 0 312 1 526 177 159 129 chr15 43146899 43146992 -42548762 + Charlie1 DNA MER1_type 2600 2720 -41 1571 224 50 36 chr15 43146993 43147409 -42548345 - L1MD2 LINE L1 -15 6344 5923 270 136 0 0 chr15 43147409 43147453 -42548301 + (TG)n Simple_repeat Simple_repeat 2 45 0 1647 185 11 3 chr15 43147454 43147741 -42548013 - AluJo SINE Alu -23 289 1 986 50 19 25 chr15 43147769 43147928 -42547826 + (TTTC)n Simple_repeat Simple_repeat 3 160 0 1599 114 102 8 chr15 43147929 43148051 -42547703 - AluSg SINE Alu -41 269 160 189 0 0 0 chr15 43148051 43148072 -42547682 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1599 114 102 8 chr15 43148072 43148195 -42547559 - AluSg SINE Alu -150 160 1 747 82 36 0 chr15 43148200 43148310 -42547444 - AluSq/x SINE Alu -187 125 12 697 159 127 0 chr15 43148435 43148561 -42547193 + FRAM SINE Alu 11 152 -24 1630 140 7 56 chr15 43148614 43148739 -42547015 + AluJo SINE Alu 17 147 -165 1720 94 30 60 chr15 43148739 43149037 -42546717 + L1PA13 LINE L1 5875 6163 0 1630 140 7 56 chr15 43149037 43149196 -42546558 + AluJo SINE Alu 147 287 -25 2355 84 0 19 chr15 43150270 43150578 -42545176 - AluSg1 SINE Alu -7 302 1 2415 71 0 7 chr15 43150695 43150992 -42544762 - AluY SINE Alu -16 295 1 183 152 0 0 chr15 43151171 43151217 -42544537 + T-rich Low_complexity Low_complexity 1 46 0 2349 104 0 0 chr15 43151277 43151575 -42544179 + AluSx SINE Alu 2 299 -13 1810 153 43 7 chr15 43151583 43151884 -42543870 + AluJb SINE Alu 1 312 0 2208 92 7 3 chr15 43152098 43152391 -42543363 - AluSg SINE Alu -16 294 1 2034 120 30 10 chr15 43152462 43152763 -42542991 - AluSx SINE Alu -5 307 1 2316 77 6 16 chr15 43152763 43153076 -42542678 - AluY SINE Alu -1 310 1 2343 101 0 0 chr15 43153354 43153660 -42542094 - AluSg SINE Alu -4 306 1 243 0 0 0 chr15 43153660 43153687 -42542067 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 1533 183 0 59 chr15 43153688 43153978 -42541776 - AluJo SINE Alu -31 281 9 2234 121 0 0 chr15 43154032 43154330 -42541424 - AluSp SINE Alu -15 298 1 1448 180 92 7 chr15 43154565 43154837 -42540917 - AluJo SINE Alu -17 295 1 688 158 9 0 chr15 43155059 43155173 -42540581 - AluJ SINE Alu -8 304 190 4208 120 37 69 chr15 43155173 43155984 -42539770 - LTR1 LTR ERV1 0 785 1 1159 136 0 94 chr15 43156024 43156237 -42539517 - AluJ SINE Alu -119 193 1 1648 200 7 26 chr15 43158288 43158593 -42537161 - AluJo SINE Alu -13 299 1 2006 80 0 0 chr15 43158725 43158963 -42536791 - AluSq SINE Alu -75 238 1 2187 132 0 0 chr15 43161699 43161995 -42533759 - AluSg SINE Alu -14 296 1 269 278 35 76 chr15 43162017 43162215 -42533539 + L2 LINE L2 3112 3301 -12 1704 123 12 8 chr15 43162216 43162469 -42533285 + AluSx SINE Alu 43 296 -16 2550 62 3 0 chr15 43162546 43162852 -42532902 + AluY SINE Alu 1 307 -4 207 0 0 0 chr15 43162852 43162875 -42532879 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 306 0 0 0 chr15 43162874 43162908 -42532846 + (GA)n Simple_repeat Simple_repeat 2 35 0 1594 86 86 9 chr15 43163910 43164160 -42531594 + AluSx SINE Alu 47 313 0 359 234 172 8 chr15 43164432 43164560 -42531194 + MIR3 SINE MIR 16 164 -44 1063 176 0 0 chr15 43164593 43164769 -42530985 - FRAM SINE Alu 0 176 1 601 260 169 62 chr15 43165273 43165611 -42530143 - MLT1J LTR MaLR -102 409 36 2085 92 92 0 chr15 43165932 43166215 -42529539 - AluSx SINE Alu -1 311 3 550 168 69 8 chr15 43166278 43166409 -42529345 - L1MDa LINE L1 -4166 2374 2236 483 157 12 0 chr15 43166410 43166493 -42529261 - AluSx SINE Alu -15 294 211 770 176 0 0 chr15 43166493 43166612 -42529142 - AluSx SINE Alu -192 120 2 2327 85 3 38 chr15 43167373 43167689 -42528065 - AluSp SINE Alu -8 305 1 512 153 51 134 chr15 43167826 43167887 -42527867 + MER58B DNA MER1_type 38 102 -2318 1333 176 22 99 chr15 43167887 43168199 -42527555 - AluJb SINE Alu -24 288 1 512 153 51 134 chr15 43168199 43168294 -42527460 + MER58B DNA MER1_type 102 181 -2239 1994 117 57 10 chr15 43168315 43168613 -42527141 - AluSx SINE Alu 0 312 1 1495 159 45 74 chr15 43168614 43168929 -42526825 - AluJo SINE Alu -12 300 1 226 0 0 0 chr15 43168983 43169008 -42526746 + (TTTTG)n Simple_repeat Simple_repeat 2 170 0 1871 163 3 0 chr15 43169008 43169291 -42526463 - AluJb SINE Alu -28 284 1 770 175 0 8 chr15 43169296 43169422 -42526332 - FLAM_C SINE Alu -16 127 3 713 213 50 0 chr15 43169424 43169565 -42526189 + MER58B DNA MER1_type 170 317 -24 1245 81 0 38 chr15 43169569 43169754 -42526000 + AluSg/x SINE Alu 129 306 -6 367 113 14 28 chr15 43169806 43169877 -42525877 + MER3 DNA MER1_type 140 209 0 238 286 0 0 chr15 43169894 43169950 -42525804 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 561 189 28 0 chr15 43171283 43171389 -42524365 + MIR3 SINE MIR 98 206 -2 3504 214 72 20 chr15 43172755 43173838 -42521916 - L1ME3A LINE L1 -9 6161 4970 341 86 17 0 chr15 43173838 43173896 -42521858 + (TA)n Simple_repeat Simple_repeat 2 60 0 3504 214 72 20 chr15 43173896 43174328 -42521426 - L1ME3A LINE L1 -1200 4970 4562 1764 171 3 3 chr15 43174457 43174756 -42520998 + AluJb SINE Alu 1 299 -13 832 128 8 23 chr15 43174823 43174956 -42520798 + FLAM_C SINE Alu 3 133 -10 1853 158 98 62 chr15 43175147 43175596 -42520158 - MLT1C LTR MaLR 0 467 3 240 35 0 0 chr15 43175755 43175784 -42519970 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1526 102 4 21 chr15 43175787 43176023 -42519731 - AluSc SINE Alu -36 273 42 728 173 8 15 chr15 43176043 43176176 -42519578 - AluJo SINE Alu -175 137 6 2353 67 13 0 chr15 43177059 43177357 -42518397 - AluSp SINE Alu -11 302 1 557 250 32 39 chr15 43177481 43177637 -42518117 + MER5B DNA MER1_type 1 155 -23 1850 169 0 3 chr15 43178015 43178328 -42517426 - AluJo SINE Alu 0 312 1 1728 163 3 3 chr15 43178355 43178643 -42517111 + AluJb SINE Alu 1 288 -24 1666 157 10 37 chr15 43179657 43179951 -42515803 + AluJo SINE Alu 1 286 -26 23 33 0 0 chr15 43179968 43179998 -42515756 + AT_rich Low_complexity Low_complexity 1 30 0 1557 174 51 20 chr15 43180059 43180352 -42515402 + AluJo SINE Alu 1 302 0 1524 191 0 0 chr15 43180790 43180804 -42514950 - AluJb SINE Alu -39 273 260 964 128 0 17 chr15 43180804 43180976 -42514778 + (TTCC)n Simple_repeat Simple_repeat 4 172 0 1524 191 0 0 chr15 43180976 43181233 -42514521 - AluJb SINE Alu -51 261 2 30 27 0 0 chr15 43181278 43181315 -42514439 + AT_rich Low_complexity Low_complexity 1 37 0 2935 174 23 7 chr15 43181329 43182056 -42513698 + L1MB5 LINE L1 5086 5826 -348 841 133 0 8 chr15 43182060 43182188 -42513566 + FLAM_C SINE Alu 6 132 -11 1846 152 0 13 chr15 43182192 43182502 -42513252 + AluSx SINE Alu 1 306 -6 2359 79 0 3 chr15 43182502 43182806 -42512948 + AluSx SINE Alu 3 305 -7 210 170 0 21 chr15 43182944 43182991 -42512763 + (CA)n Simple_repeat Simple_repeat 1 46 0 1857 158 3 6 chr15 43183600 43183911 -42511843 + AluJb SINE Alu 1 310 -2 305 219 41 0 chr15 43184019 43184092 -42511662 - L2 LINE L2 0 3313 3238 2406 56 3 0 chr15 43184489 43184793 -42510961 + AluY SINE Alu 2 306 -5 657 183 0 17 chr15 43184933 43185048 -42510706 + FLAM_A SINE Alu 4 116 -17 1682 158 11 7 chr15 43186224 43186503 -42509251 - AluSx SINE Alu -22 290 11 323 183 183 12 chr15 43186516 43186598 -42509156 - L1MC4 LINE L1 -1333 6709 6614 580 143 0 11 chr15 43186947 43187038 -42508716 + AluJ/FLAM SINE Alu 2 91 -221 1713 154 7 7 chr15 43187042 43187328 -42508426 + AluSc SINE Alu 1 286 -23 227 98 0 0 chr15 43187445 43187486 -42508268 + AluSc SINE Alu 263 303 0 1352 147 127 27 chr15 43187515 43187816 -42507938 + AluSx SINE Alu 1 327 0 574 157 0 0 chr15 43187821 43187910 -42507844 - FLAM_C SINE Alu -25 118 30 661 254 106 91 chr15 43188005 43188469 -42507285 + HAL1 LINE L1 48 518 -1989 405 314 16 21 chr15 43188537 43188728 -42507026 + HAL1 LINE L1 637 826 -1681 24 0 0 0 chr15 43188728 43188752 -42507002 + AT_rich Low_complexity Low_complexity 1 24 0 348 138 0 0 chr15 43188752 43188810 -42506944 - Alu SINE Alu 0 302 245 445 297 129 19 chr15 43189614 43189823 -42505931 + MIR SINE MIR 21 252 -10 2407 61 0 0 chr15 43190994 43191289 -42504465 - AluY SINE Alu -16 295 1 180 0 0 0 chr15 43191452 43191472 -42504282 + (A)n Simple_repeat Simple_repeat 1 20 0 754 140 0 0 chr15 43192109 43192216 -42503538 - U6 snRNA snRNA 0 107 1 2498 49 0 3 chr15 43192246 43192551 -42503203 - AluY SINE Alu -7 304 1 2311 79 3 3 chr15 43192579 43192882 -42502872 - AluSp SINE Alu -10 303 1 626 202 57 0 chr15 43193365 43193489 -42502265 - FLAM_A SINE Alu -1 132 2 22 0 0 0 chr15 43193489 43193511 -42502243 + AT_rich Low_complexity Low_complexity 1 22 0 2128 126 0 0 chr15 43193511 43193821 -42501933 + AluSx SINE Alu 1 310 -2 813 255 159 49 chr15 43194002 43194493 -42501261 - L1MC4a LINE L1 -1849 5959 5415 2010 125 13 0 chr15 43194501 43194804 -42500950 - AluSx SINE Alu -5 307 1 2275 109 0 0 chr15 43195177 43195489 -42500265 + AluSx SINE Alu 1 312 0 677 115 31 0 chr15 43196255 43196351 -42499403 + AluSq/x SINE Alu 36 134 -178 647 169 84 0 chr15 43196351 43196505 -42499249 + Charlie1 DNA MER1_type 2544 2710 -51 882 185 26 0 chr15 43196507 43196658 -42499096 - AluJb SINE Alu -18 294 140 241 152 0 0 chr15 43196750 43196783 -42498971 - Alu SINE Alu -254 45 13 2192 92 7 0 chr15 43196815 43197108 -42498646 + AluSp SINE Alu 1 295 -18 321 105 0 53 chr15 43197109 43197166 -42498588 + Charlie1 DNA MER1_type 2707 2760 -1 231 396 32 0 chr15 43197493 43197647 -42498107 + L2 LINE L2 2512 2670 -644 2202 90 0 0 chr15 43197690 43197978 -42497776 - AluSc SINE Alu -21 288 1 2082 114 3 7 chr15 43198027 43198335 -42497419 - AluSx SINE Alu -5 307 1 419 214 36 7 chr15 43198510 43198650 -42497104 + GA-rich Low_complexity Low_complexity 4 147 0 227 427 0 0 chr15 43198831 43198913 -42496841 + C-rich Low_complexity Low_complexity 1 82 0 325 329 19 13 chr15 43198992 43199150 -42496604 + CT-rich Low_complexity Low_complexity 1 159 0 2296 78 7 3 chr15 43199322 43199629 -42496125 - AluSp SINE Alu -5 308 1 407 205 26 0 chr15 43199633 43199711 -42496043 - FLAM SINE Alu -3 130 51 671 175 0 0 chr15 43199714 43199817 -42495937 - AluJb SINE Alu -209 103 1 1330 176 5 0 chr15 43199853 43200075 -42495679 - L1MDa LINE L1 -6300 240 18 2088 106 6 16 chr15 43200562 43200874 -42494880 - AluSp SINE Alu -4 309 1 313 309 82 10 chr15 43201047 43201144 -42494610 + MIR SINE MIR 21 124 -84 2100 91 3 13 chr15 43201146 43201454 -42494300 - AluY SINE Alu -6 305 1 778 152 0 0 chr15 43201455 43201567 -42494187 - AluSq/x SINE Alu -179 134 23 1364 157 25 91 chr15 43201611 43201770 -42493984 - AluSx SINE Alu -15 297 168 2144 102 13 0 chr15 43201770 43202073 -42493681 - AluSp SINE Alu -6 307 1 1364 157 25 91 chr15 43202073 43202231 -42493523 - AluSx SINE Alu -144 168 1 200 250 66 26 chr15 43202304 43202380 -42493374 - MIR SINE MIR -66 142 64 1907 129 3 0 chr15 43203468 43203754 -42492000 - AluSx SINE Alu -25 287 1 1827 190 239 61 chr15 43203992 43204660 -42491094 + L2 LINE L2 1980 2766 -548 2023 122 0 3 chr15 43204734 43205030 -42490724 + AluSx SINE Alu 1 295 -17 1290 207 4 0 chr15 43205076 43205332 -42490422 + AluJo SINE Alu 1 257 -55 2273 168 139 11 chr15 43205350 43205803 -42489951 + MLT1F1 LTR MaLR 50 560 -7 326 276 0 35 chr15 43205839 43205926 -42489828 - L2 LINE L2 0 3313 3230 233 356 56 0 chr15 43205950 43206040 -42489714 - L2 LINE L2 -11 3302 3208 1489 216 80 86 chr15 43206269 43206439 -42489315 - L2 LINE L2 0 3313 3144 1890 116 0 20 chr15 43206439 43206756 -42488998 + AluJb SINE Alu 1 312 0 1489 216 80 86 chr15 43206756 43207098 -42488656 - L2 LINE L2 -169 3144 2804 889 247 32 18 chr15 43207102 43207321 -42488433 - MER58A DNA MER1_type -2 222 1 1946 132 10 3 chr15 43209805 43210108 -42485646 - AluSx SINE Alu -6 306 2 21 0 0 0 chr15 43210609 43210630 -42485124 + AT_rich Low_complexity Low_complexity 1 21 0 219 36 0 0 chr15 43211441 43211469 -42484285 + (TA)n Simple_repeat Simple_repeat 1 28 0 189 242 91 15 chr15 43215179 43215245 -42480509 - L3 LINE CR1 -831 746 676 213 39 0 0 chr15 43215721 43215747 -42480007 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 255 133 0 0 chr15 43216028 43216073 -42479681 + (CA)n Simple_repeat Simple_repeat 2 46 0 752 269 37 21 chr15 43216731 43216973 -42478781 + MIR SINE MIR 5 250 -12 2075 110 10 0 chr15 43217265 43217566 -42478188 + AluSp SINE Alu 1 304 -9 255 218 18 100 chr15 43217706 43217816 -42477938 + L2 LINE L2 3167 3267 -46 369 317 75 8 chr15 43219126 43219246 -42476508 + MIR SINE MIR 16 143 -65 1677 171 4 4 chr15 43219298 43219579 -42476175 + AluJo SINE Alu 27 307 -5 2194 109 3 0 chr15 43219583 43219864 -42475890 + AluY SINE Alu 1 301 -10 208 0 0 0 chr15 43219864 43219887 -42475867 + (TAAA)n Simple_repeat Simple_repeat 2 120 0 2194 109 3 0 chr15 43219887 43219899 -42475855 + AluY SINE Alu 301 311 0 2324 107 0 22 chr15 43219901 43220220 -42475534 + AluSx SINE Alu 1 312 0 260 315 56 19 chr15 43223022 43223130 -42472624 - MIR SINE MIR -78 130 19 2380 94 0 0 chr15 43223652 43223951 -42471803 - AluSc SINE Alu -10 299 1 1886 101 0 0 chr15 43223997 43224244 -42471510 - AluSg SINE Alu -17 293 47 1230 181 9 17 chr15 43224426 43224658 -42471096 - AluJo SINE Alu -82 230 1 368 241 113 45 chr15 43224658 43224791 -42470963 - MIR SINE MIR -21 241 100 180 152 0 0 chr15 43225397 43225430 -42470324 + T-rich Low_complexity Low_complexity 1 33 0 2293 47 43 0 chr15 43225932 43226209 -42469545 - AluY SINE Alu -22 289 1 684 252 63 0 chr15 43226514 43226720 -42469034 + MIR SINE MIR 44 262 0 192 184 0 0 chr15 43226926 43226964 -42468790 + L2 LINE L2 3265 3302 -11 210 352 109 16 chr15 43227750 43227878 -42467876 - L2 LINE L2 -16 3256 3117 269 180 0 0 chr15 43227944 43227994 -42467760 + L2 LINE L2 3264 3313 0 2285 90 0 7 chr15 43228282 43228570 -42467184 - AluSc SINE Alu -22 287 2 218 323 175 9 chr15 43229148 43229371 -42466383 + L2 LINE L2 2717 2976 -338 788 137 0 58 chr15 43229780 43229919 -42465835 - FLAM_C SINE Alu 0 133 3 200 311 59 25 chr15 43230585 43230704 -42465050 - MIR SINE MIR -131 131 9 345 24 0 0 chr15 43231094 43231136 -42464618 + (TG)n Simple_repeat Simple_repeat 2 43 0 1127 146 6 0 chr15 43231224 43231388 -42464366 + AluJb SINE Alu 138 302 -10 2006 157 0 0 chr15 43231395 43231688 -42464066 + AluJb SINE Alu 3 295 -17 2368 85 7 3 chr15 43231719 43232025 -42463729 + AluSp SINE Alu 1 307 -6 650 107 223 0 chr15 43232099 43232211 -42463543 + AluJb SINE Alu 160 296 -16 1025 157 127 23 chr15 43232211 43232476 -42463278 + L1MB4 LINE L1 5823 6081 -99 22 0 0 0 chr15 43232549 43232571 -42463183 + AT_rich Low_complexity Low_complexity 1 22 0 1740 167 3 21 chr15 43233278 43233565 -42462189 + AluJo SINE Alu 13 294 -18 352 256 111 47 chr15 43233584 43233756 -42461998 + MIR SINE MIR 36 218 -44 207 0 0 0 chr15 43233807 43233830 -42461924 + (A)n Simple_repeat Simple_repeat 1 23 0 198 176 0 0 chr15 43234434 43234485 -42461269 + (CA)n Simple_repeat Simple_repeat 1 51 0 29 47 0 0 chr15 43234933 43234976 -42460778 + AT_rich Low_complexity Low_complexity 1 43 0 723 171 0 8 chr15 43235069 43235192 -42460562 + FLAM_A SINE Alu 11 132 -10 1927 115 3 58 chr15 43235194 43235507 -42460247 + AluSx SINE Alu 12 307 -5 1872 140 55 0 chr15 43237092 43237385 -42458369 - AluSx SINE Alu -3 309 1 26 0 0 0 chr15 43237385 43237411 -42458343 + AT_rich Low_complexity Low_complexity 1 26 0 806 193 0 77 chr15 43237411 43237450 -42458304 - AluJo SINE Alu -140 172 132 1993 157 3 7 chr15 43237450 43237749 -42458005 - AluJb SINE Alu -14 298 1 806 193 0 77 chr15 43237749 43237890 -42457864 - AluJo SINE Alu -180 132 6 769 90 0 0 chr15 43237949 43238049 -42457705 + HY3 scRNA scRNA 1 100 -1 2381 35 108 0 chr15 43238425 43238711 -42457043 + AluYb8 SINE Alu 2 318 0 2119 134 0 0 chr15 43238757 43239048 -42456706 + AluSx SINE Alu 1 291 -21 1054 225 14 0 chr15 43239547 43239756 -42455998 - AluJb SINE Alu 0 312 101 2600 53 0 3 chr15 43239756 43240058 -42455696 + AluSp SINE Alu 1 301 -12 682 173 0 0 chr15 43240110 43240214 -42455540 + MER1B DNA MER1_type 21 124 -173 2045 125 0 26 chr15 43240218 43240521 -42455233 + AluSx SINE Alu 1 295 -17 1477 178 46 4 chr15 43240546 43240805 -42454949 - AluJo SINE Alu -29 283 14 3507 141 24 19 chr15 43240809 43241426 -42454328 - L1MD1 LINE L1 -306 5936 5317 22 56 0 0 chr15 43241426 43241462 -42454292 + AT_rich Low_complexity Low_complexity 1 36 0 1411 184 86 4 chr15 43241523 43241790 -42453964 - AluJo SINE Alu -23 289 1 467 219 109 22 chr15 43241835 43241972 -42453782 + LTR67 LTR ERVL 409 557 0 1841 122 0 96 chr15 43242063 43242408 -42453346 + AluJb SINE Alu 1 312 0 2270 87 0 0 chr15 43242409 43242685 -42453069 + AluSx SINE Alu 1 276 -36 2469 80 0 13 chr15 43242685 43242999 -42452755 + AluSp SINE Alu 2 311 -2 313 136 119 0 chr15 43243184 43243243 -42452511 - MER106A DNA MER1_type -115 121 56 2257 70 0 43 chr15 43243283 43243585 -42452169 + AluSp SINE Alu 1 289 -24 24 77 0 0 chr15 43243620 43243672 -42452082 + AT_rich Low_complexity Low_complexity 1 52 0 2219 105 10 10 chr15 43243683 43243987 -42451767 + AluSq SINE Alu 1 304 -9 2285 116 0 0 chr15 43244199 43244502 -42451252 - AluSx SINE Alu -9 303 1 237 125 0 0 chr15 43244534 43244566 -42451188 + Alu SINE Alu 13 44 -259 1594 158 4 22 chr15 43294895 43295168 -42400586 + AluJo SINE Alu 1 268 -44 2374 62 10 0 chr15 43295174 43295478 -42400276 - AluY SINE Alu -4 307 1 1790 158 23 3 chr15 43295512 43295816 -42399938 + AluJo SINE Alu 1 310 -2 880 138 0 0 chr15 43295984 43296114 -42399640 + AluSq/x SINE Alu 1 130 -182 2330 91 0 0 chr15 43296115 43296422 -42399332 + AluY SINE Alu 1 307 -4 2349 89 0 0 chr15 43296633 43296935 -42398819 - AluSc SINE Alu -7 302 1 2042 133 0 0 chr15 43297014 43297314 -42398440 - AluSx SINE Alu -9 303 4 2002 128 3 0 chr15 43297400 43297697 -42398057 + AluSx SINE Alu 1 298 -14 477 152 86 0 chr15 43297707 43297812 -42397942 + L1MB4 LINE L1 6061 6174 -6 2545 27 7 0 chr15 43297837 43298135 -42397619 + AluY SINE Alu 1 300 -11 269 253 48 24 chr15 43298290 43298373 -42397381 + MIR3 SINE MIR 6 90 -118 583 188 0 47 chr15 43298373 43298501 -42397253 - MLT1D LTR MaLR 0 505 384 6665 86 8 15 chr15 43298601 43300066 -42395688 + SVA Other Other 206 1386 0 2140 100 0 0 chr15 43300096 43300400 -42395354 + AluSg SINE Alu 1 304 0 353 281 19 0 chr15 43300438 43300598 -42395156 + L1MEc LINE L1 726 888 -5508 1613 129 83 8 chr15 43300605 43300869 -42394885 + AluSx SINE Alu 7 290 -22 819 170 47 61 chr15 43300869 43300931 -42394823 + L1M4 LINE L1 3696 3757 -2389 1697 135 34 34 chr15 43300931 43301227 -42394527 + AluJo SINE Alu 1 296 -16 819 170 47 61 chr15 43301227 43301376 -42394378 + L1M4 LINE L1 3757 3904 -2242 818 102 61 14 chr15 43301479 43301626 -42394128 - AluY SINE Alu -157 154 1 342 263 44 29 chr15 43301628 43301641 -42394113 + MIR SINE MIR 65 76 -186 207 0 0 0 chr15 43301641 43301664 -42394090 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 342 263 44 29 chr15 43301664 43301787 -42393967 + MIR SINE MIR 76 203 -59 2285 78 3 0 chr15 43301839 43302133 -42393621 - AluSx SINE Alu -17 295 1 275 388 59 0 chr15 43302488 43302640 -42393114 + MIR SINE MIR 28 188 -74 1726 127 39 42 chr15 43302831 43303138 -42392616 + AluJo SINE Alu 1 306 -6 1369 121 26 124 chr15 43303337 43303607 -42392147 - Tigger3(Golem) DNA MER2_type -1 3027 2732 2201 107 3 3 chr15 43303607 43303915 -42391839 + AluSg SINE Alu 1 308 -2 1369 121 26 124 chr15 43303915 43303929 -42391825 - Tigger3(Golem) DNA MER2_type -296 2732 2718 2186 105 0 3 chr15 43303929 43304233 -42391521 + AluSx SINE Alu 3 305 -7 1369 121 26 124 chr15 43304233 43304244 -42391510 - Tigger3(Golem) DNA MER2_type -310 2718 2765 2010 97 0 28 chr15 43304244 43304562 -42391192 + AluSx SINE Alu 1 310 0 1369 121 26 124 chr15 43304562 43304609 -42391145 - Tigger3(Golem) DNA MER2_type -262 2766 2716 54 0 0 0 chr15 43304651 43304705 -42391049 + AT_rich Low_complexity Low_complexity 1 54 0 1804 138 4 7 chr15 43304705 43304981 -42390773 - AluSx SINE Alu -37 275 1 719 176 0 8 chr15 43305021 43305146 -42390608 + AluJo SINE Alu 13 136 -176 25 0 0 0 chr15 43305146 43305171 -42390583 + AT_rich Low_complexity Low_complexity 1 25 0 1634 192 38 68 chr15 43305172 43305405 -42390349 - L1M4 LINE L1 -1287 4859 4621 2166 109 3 0 chr15 43305405 43305708 -42390046 - AluY SINE Alu -6 305 2 1634 192 38 68 chr15 43305708 43305818 -42389936 - L1M4 LINE L1 -1525 4621 4509 1873 141 7 20 chr15 43305818 43306115 -42389639 + AluSx SINE Alu 1 293 -19 1634 192 38 68 chr15 43306115 43306270 -42389484 - L1M4 LINE L1 -1637 4509 4375 2072 108 7 0 chr15 43306271 43306559 -42389195 - AluSp SINE Alu -21 292 3 2333 80 0 10 chr15 43306561 43306872 -42388882 - AluY SINE Alu -3 308 1 1524 130 63 21 chr15 43306872 43307157 -42388597 - AluSp SINE Alu -16 297 1 198 0 0 0 chr15 43307158 43307180 -42388574 + (TTTTC)n Simple_repeat Simple_repeat 2 23 0 1891 143 0 0 chr15 43307180 43307460 -42388294 - AluSg SINE Alu -30 280 1 1885 138 3 10 chr15 43307460 43307757 -42387997 - AluSg SINE Alu -12 298 4 850 165 0 0 chr15 43307759 43307892 -42387862 - AluJo/FLAM SINE Alu -169 133 1 2107 92 20 3 chr15 43308229 43308533 -42387221 + AluY SINE Alu 1 309 -2 286 227 120 0 chr15 43308533 43308608 -42387146 + MER97c DNA MER1_type? 95 178 -912 2322 92 0 0 chr15 43308744 43309048 -42386706 + AluSg SINE Alu 1 304 -6 748 217 159 4 chr15 43309112 43309338 -42386416 + MIR SINE MIR 2 262 0 304 205 24 0 chr15 43310021 43310104 -42385650 + L1MA10 LINE L1 6250 6334 0 953 148 46 79 chr15 43310136 43310245 -42385509 + MER2 DNA MER2_type 2 113 -232 1900 91 69 0 chr15 43310245 43310521 -42385233 + AluSx SINE Alu 1 295 -17 2176 103 3 3 chr15 43310521 43310822 -42384932 + AluSq SINE Alu 1 301 -12 953 148 46 79 chr15 43310822 43310927 -42384827 + MER2 DNA MER2_type 111 210 -135 2216 82 0 23 chr15 43314708 43315014 -42380740 + AluY SINE Alu 5 303 -8 2440 57 0 13 chr15 43315016 43315330 -42380424 + AluSg SINE Alu 1 310 0 1333 173 6 96 chr15 43315339 43315663 -42380091 + AluJo SINE Alu 1 295 -17 1656 106 29 141 chr15 43315735 43316075 -42379679 + AluYb8 SINE Alu 1 302 -6 2213 77 3 13 chr15 43316602 43316900 -42378854 - AluY SINE Alu -16 295 1 1434 148 0 0 chr15 43316936 43317146 -42378608 - AluSq SINE Alu -94 219 10 1088 150 0 11 chr15 43317157 43317337 -42378417 - AluJb SINE Alu 0 312 135 1771 140 24 10 chr15 43317748 43318040 -42377714 - AluJb SINE Alu -16 296 1 253 222 99 25 chr15 43318218 43318299 -42377455 + MER97c DNA MER1_type? 16 102 -988 1428 174 35 3 chr15 43318302 43318429 -42377325 + AluJo SINE Alu 5 127 -185 2011 125 10 0 chr15 43318429 43318726 -42377028 + AluSq SINE Alu 1 300 -13 1428 174 35 3 chr15 43318726 43318885 -42376869 + AluJo SINE Alu 127 300 -12 2460 62 0 3 chr15 43318890 43319199 -42376555 + AluY SINE Alu 1 308 -3 1507 153 29 11 chr15 43319252 43319308 -42376446 + AluY SINE Alu 1 54 -257 1515 78 10 5 chr15 43319308 43319514 -42376240 + AluSp SINE Alu 94 300 -13 1507 153 29 11 chr15 43319514 43319731 -42376023 + AluY SINE Alu 54 279 -32 895 86 16 0 chr15 43319831 43319959 -42375795 + AluSp/q SINE Alu 164 293 -20 424 36 0 0 chr15 43319998 43320053 -42375701 + AluSp/q SINE Alu 241 295 -18 336 260 33 60 chr15 43320778 43320928 -42374826 - MIR3 SINE MIR -36 172 27 2004 136 3 7 chr15 43321571 43321879 -42373875 + AluSx SINE Alu 1 307 -5 182 302 32 0 chr15 43321908 43321971 -42373783 + MIR SINE MIR 74 138 -70 1688 126 18 84 chr15 43321971 43322304 -42373450 - AluSx SINE Alu -1 311 1 1789 169 3 3 chr15 43322307 43322609 -42373145 - AluJo SINE Alu -10 302 1 405 252 148 0 chr15 43322858 43322973 -42372781 - MIR3 SINE MIR -17 191 60 1060 184 18 18 chr15 43323118 43323341 -42372413 + AluJo SINE Alu 85 307 -5 32 26 0 0 chr15 43324255 43324294 -42371460 + AT_rich Low_complexity Low_complexity 1 39 0 784 186 0 0 chr15 43324294 43324423 -42371331 - FLAM_C SINE Alu 0 133 5 2172 96 6 13 chr15 43324996 43325309 -42370445 - AluSx SINE Alu -1 311 1 1750 112 0 4 chr15 43325909 43326159 -42369595 + AluSq SINE Alu 57 305 -8 222 304 104 9 chr15 43326691 43326806 -42368948 - MIR SINE MIR -62 146 21 1393 138 43 43 chr15 43326884 43327030 -42368724 - AluJo SINE Alu -24 288 140 2182 94 3 26 chr15 43327030 43327339 -42368415 - AluSx SINE Alu -6 306 5 1393 138 43 43 chr15 43327339 43327446 -42368308 - AluJo SINE Alu -171 141 35 206 273 227 23 chr15 43327964 43328096 -42367658 + MIR3 SINE MIR 39 197 -11 208 294 222 9 chr15 43329244 43329399 -42366355 - MIR SINE MIR -62 146 10 1998 143 0 6 chr15 43330086 43330400 -42365354 + AluSx SINE Alu 1 312 0 206 281 0 0 chr15 43330585 43330642 -42365112 + MIR SINE MIR 194 250 -12 996 86 0 14 chr15 43330642 43330781 -42364973 + AluSq/x SINE Alu 1 137 -175 2326 106 0 0 chr15 43330786 43331097 -42364657 + AluSq SINE Alu 1 311 -2 328 222 162 0 chr15 43331150 43331249 -42364505 - MIR SINE MIR -50 212 98 2146 111 0 10 chr15 43331474 43331781 -42363973 - AluSc SINE Alu -5 304 1 180 277 62 15 chr15 43332218 43332283 -42363471 - MIR SINE MIR -79 183 116 909 164 13 0 chr15 43332344 43332536 -42363218 - AluJb SINE Alu 0 322 129 2196 126 7 0 chr15 43332541 43332851 -42362903 - AluSx SINE Alu 0 312 1 2322 78 7 7 chr15 43332858 43333167 -42362587 - AluSg1 SINE Alu 0 309 1 1504 141 126 15 chr15 43333167 43333436 -42362318 - AluJb SINE Alu -13 299 1 561 159 83 23 chr15 43333556 43333688 -42362066 - MIR3 SINE MIR -20 188 49 325 281 14 43 chr15 43333868 43334007 -42361747 + MIR3 SINE MIR 51 185 -23 355 264 75 1 chr15 43334482 43334599 -42361155 + MIR SINE MIR 1 128 -80 287 286 86 0 chr15 43335850 43335955 -42359799 + MIR SINE MIR 40 153 -109 2348 74 3 0 chr15 43335964 43336261 -42359493 + AluSp SINE Alu 1 298 -15 374 314 32 8 chr15 43336678 43336802 -42358952 - MIR SINE MIR -113 149 23 271 225 40 157 chr15 43336833 43336908 -42358846 + MIR SINE MIR 44 98 -164 1871 116 65 0 chr15 43336908 43337201 -42358553 + AluSx SINE Alu 1 312 0 271 225 40 157 chr15 43337201 43337291 -42358463 + MIR SINE MIR 98 197 -65 1024 155 0 0 chr15 43337294 43337455 -42358299 + FRAM SINE Alu 1 161 -15 236 214 316 20 chr15 43337823 43337921 -42357833 + MIR SINE MIR 54 180 -28 3630 170 130 17 chr15 43338599 43339374 -42356380 + MER21B LTR ERV1 1 863 0 486 0 0 0 chr15 43339506 43339560 -42356194 + (TG)n Simple_repeat Simple_repeat 2 55 0 1556 174 31 11 chr15 43339561 43339848 -42355906 - AluSx SINE Alu -10 302 10 1912 90 0 30 chr15 43341562 43341829 -42353925 + AluSc SINE Alu 39 297 -12 478 88 132 0 chr15 43341855 43341923 -42353831 - AluSg/x SINE Alu -159 151 75 963 107 51 34 chr15 43341924 43342102 -42353652 - AluJb SINE Alu -121 191 11 2249 66 23 7 chr15 43342113 43342414 -42353340 - AluY SINE Alu -5 306 1 2175 94 3 26 chr15 43342772 43343081 -42352673 - AluSp SINE Alu -9 304 3 315 313 114 24 chr15 43344604 43344770 -42350984 + MIR SINE MIR 20 200 -62 1933 90 43 0 chr15 43344893 43345164 -42350590 + AluY SINE Alu 1 286 -25 186 71 0 0 chr15 43345164 43345192 -42350562 + (CTAAA)n Simple_repeat Simple_repeat 3 30 0 2201 98 0 3 chr15 43345204 43345500 -42350254 + AluSc SINE Alu 1 295 -14 400 326 6 37 chr15 43346030 43346258 -42349496 + MIR SINE MIR 10 227 -35 300 274 32 11 chr15 43346440 43346535 -42349219 - MIR SINE MIR -87 175 79 1928 114 16 28 chr15 43346914 43347231 -42348523 - AluSq SINE Alu 0 313 1 2161 83 3 3 chr15 43348016 43348306 -42347448 - AluSg SINE Alu -7 303 14 211 267 107 0 chr15 43348322 43348397 -42347357 - L2 LINE L2 -29 3284 3202 1859 147 10 22 chr15 43349181 43349358 -42346396 - AluJb SINE Alu -2 310 132 180 0 0 0 chr15 43349358 43349378 -42346376 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2227 68 0 4 chr15 43349378 43349659 -42346095 - AluY SINE Alu -31 280 1 1859 147 10 22 chr15 43349659 43349794 -42345960 - AluJb SINE Alu -178 134 1 2177 81 17 3 chr15 43350865 43351161 -42344593 - AluSx SINE Alu -12 300 1 1503 104 5 5 chr15 43352162 43352373 -42343381 + AluSq SINE Alu 1 211 -102 265 82 82 0 chr15 43352375 43352424 -42343330 + FLAM_A SINE Alu 78 130 -3 352 277 36 0 chr15 43352424 43352507 -42343247 + L1MC4 LINE L1 6617 6702 -1340 312 279 35 12 chr15 43352481 43352567 -42343187 - L1MC4 LINE L1 -1340 6702 6615 * 264 59 0 0 chr15 43352596 43352630 -42343124 + (CA)n Simple_repeat Simple_repeat 2 35 0 210 220 50 80 chr15 43352896 43352996 -42342758 - MIR SINE MIR -110 152 56 277 238 50 12 chr15 43353926 43354006 -42341748 - MIR3 SINE MIR -3 205 123 383 149 58 58 chr15 43354026 43354113 -42341641 - AluSg/x SINE Alu 0 302 216 666 172 69 0 chr15 43354113 43354229 -42341525 - AluSc SINE Alu -63 246 123 360 240 20 30 chr15 43355116 43355216 -42340538 - L1MC4 LINE L1 -1339 6983 1995 716 160 34 0 chr15 43355235 43355354 -42340400 - AluJb SINE Alu -176 136 14 220 319 50 64 chr15 43355364 43355505 -42340249 - MIR SINE MIR -122 140 2 1415 130 72 110 chr15 43355537 43355656 -42340098 - MER51A LTR ERV1 -9 625 503 1995 142 3 0 chr15 43355656 43355967 -42339787 + AluSx SINE Alu 1 312 0 1415 130 72 110 chr15 43355967 43356318 -42339436 - MER51A LTR ERV1 -131 503 140 2229 94 0 28 chr15 43356318 43356637 -42339117 - AluSg SINE Alu 0 310 1 2057 112 0 0 chr15 43356647 43356957 -42338797 - AluSc SINE Alu 0 310 1 1415 130 72 110 chr15 43356957 43357041 -42338713 - MER51A LTR ERV1 -503 131 1 756 152 15 8 chr15 43357185 43357317 -42338437 + L1MB8 LINE L1 6045 6177 -1 1744 158 7 7 chr15 43357317 43357615 -42338139 - AluJo SINE Alu -14 298 1 2116 111 10 0 chr15 43357728 43358034 -42337720 + AluY SINE Alu 1 309 -2 268 291 264 0 chr15 43358064 43358246 -42337508 - L2 LINE L2 -193 3120 2891 351 261 101 14 chr15 43358830 43358968 -42336786 + MIR3 SINE MIR 35 184 -24 722 82 0 0 chr15 43359429 43359527 -42336227 + AluSp/q SINE Alu 210 307 -6 246 286 0 0 chr15 43359747 43359803 -42335951 - L2 LINE L2 0 3313 3258 207 176 0 0 chr15 43360094 43360128 -42335626 + CT-rich Low_complexity Low_complexity 28 61 0 2044 99 16 26 chr15 43360391 43360703 -42335051 - AluSc SINE Alu 0 309 1 1778 146 7 17 chr15 43360703 43361004 -42334750 - AluJo SINE Alu -14 298 1 1631 127 70 42 chr15 43361154 43361438 -42334316 - AluSx SINE Alu -7 305 14 620 214 38 23 chr15 43362407 43362538 -42333216 + FLAM_A SINE Alu 1 133 0 1672 157 37 20 chr15 43362594 43362893 -42332861 - AluSx SINE Alu -8 304 1 880 134 15 0 chr15 43362894 43363028 -42332726 - AluSq/x SINE Alu -176 136 1 2091 137 0 0 chr15 43363059 43363359 -42332395 - AluSx SINE Alu -12 300 1 218 250 153 32 chr15 43363550 43363674 -42332080 + MIR SINE MIR 77 215 -47 2080 117 3 0 chr15 43363735 43364026 -42331728 - AluSx SINE Alu -18 294 3 272 323 51 16 chr15 43364153 43364296 -42331458 + MIR SINE MIR 38 153 -55 2083 98 0 0 chr15 43364663 43364984 -42330770 - AluSg SINE Alu 0 325 5 198 319 14 14 chr15 43365245 43365314 -42330440 - MIR SINE MIR -68 140 72 189 107 0 0 chr15 43365455 43365483 -42330271 + (TG)n Simple_repeat Simple_repeat 1 28 0 1368 205 0 22 chr15 43366065 43366203 -42329551 + AluJb SINE Alu 1 132 -180 2190 101 3 0 chr15 43366203 43366501 -42329253 + AluSc SINE Alu 1 299 -10 1368 205 0 22 chr15 43366501 43366635 -42329119 + AluJb SINE Alu 132 267 -45 200 350 58 58 chr15 43366660 43366719 -42329035 + MER5B DNA MER1_type 1 59 -119 1634 205 0 7 chr15 43366719 43367017 -42328737 + AluJo SINE Alu 1 296 -16 200 350 58 58 chr15 43367017 43367077 -42328677 + MER5B DNA MER1_type 58 120 -58 1874 116 7 40 chr15 43367318 43367621 -42328133 - AluSx SINE Alu -17 295 3 2098 114 3 3 chr15 43367625 43367924 -42327830 - AluSx SINE Alu -13 299 1 2181 110 3 0 chr15 43367940 43368240 -42327514 - AluSg SINE Alu -9 301 1 516 327 51 18 chr15 43368248 43368465 -42327289 + MIR SINE MIR 7 230 -32 1135 115 0 0 chr15 43368490 43368646 -42327108 + AluSg/x SINE Alu 135 290 -20 2191 102 0 0 chr15 43368646 43368941 -42326813 + AluSc SINE Alu 1 295 -14 400 303 0 0 chr15 43368951 43369040 -42326714 + L1MC4 LINE L1 6615 6703 -1339 * 401 273 23 0 chr15 43368972 43369060 -42326694 - L1MC4 LINE L1 -1339 6703 6614 1174 121 258 38 chr15 43369089 43369233 -42326521 + AluSx SINE Alu 2 113 -189 2325 85 3 0 chr15 43369233 43369539 -42326215 + AluSp SINE Alu 1 307 -6 1174 121 258 38 chr15 43369539 43369634 -42326120 + AluSx SINE Alu 113 294 -8 309 354 63 11 chr15 43370013 43370200 -42325554 - MIR SINE MIR -29 233 32 711 165 0 16 chr15 43370262 43370383 -42325371 + FLAM_C SINE Alu 2 120 -23 210 72 58 29 chr15 43370383 43370452 -42325302 + (TA)n Simple_repeat Simple_repeat 2 72 0 2213 92 33 0 chr15 43370455 43370758 -42324996 - AluSp SINE Alu 0 313 1 211 70 23 23 chr15 43370834 43370877 -42324877 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1754 158 0 0 chr15 43370879 43371152 -42324602 - AluJb SINE Alu -32 280 8 1721 166 16 19 chr15 43371160 43371473 -42324281 - AluJo SINE Alu 0 312 1 188 35 35 0 chr15 43371540 43371569 -42324185 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2264 67 0 3 chr15 43371571 43371856 -42323898 - AluY SINE Alu -22 289 6 1950 116 0 4 chr15 43371867 43372143 -42323611 - AluSx SINE Alu -8 304 30 339 320 191 11 chr15 43372219 43372397 -42323357 - L1MC4a LINE L1 -1473 6335 6126 981 234 121 34 chr15 43372400 43372738 -42323016 + MLT2E LTR ERVL 147 574 -54 2063 130 6 60 chr15 43372738 43372941 -42322813 + MER1B DNA MER1_type 1 179 -2531 2059 100 38 3 chr15 43372941 43373231 -42322523 - AluSq SINE Alu -13 300 1 2063 130 6 60 chr15 43373231 43373380 -42322374 + MER1B DNA MER1_type 179 334 -3 981 234 121 34 chr15 43373380 43373439 -42322315 + MLT2E LTR ERVL 574 626 -2 1154 272 118 54 chr15 43373548 43373770 -42321984 - L1MB7 LINE L1 -39 6145 5924 1849 260 61 16 chr15 43373770 43374377 -42321377 - L1MC4a LINE L1 -1907 5901 5268 2323 76 0 25 chr15 43374433 43374748 -42321006 + AluY SINE Alu 1 307 -4 207 0 0 0 chr15 43374838 43374861 -42320893 + (CA)n Simple_repeat Simple_repeat 2 24 0 326 245 245 7 chr15 43375101 43375244 -42320510 + MIR3 SINE MIR 15 191 -17 1970 130 62 22 chr15 43375342 43375666 -42320088 - MER1B DNA MER1_type 0 337 1 411 320 17 29 chr15 43375907 43376082 -42319672 - MIR SINE MIR -59 203 31 699 127 0 18 chr15 43376277 43376387 -42319367 + AluJb SINE Alu 2 109 -203 2549 39 0 10 chr15 43377166 43377476 -42318278 - AluY SINE Alu -4 307 1 2075 99 10 0 chr15 43377492 43377786 -42317968 - L1PA13 LINE L1 0 6163 5867 335 253 0 22 chr15 43378144 43378235 -42317519 + MIR SINE MIR 123 211 -51 894 168 5 47 chr15 43378456 43378646 -42317108 - AluJb SINE Alu -10 302 121 2242 96 3 0 chr15 43378758 43379059 -42316695 - AluSc SINE Alu -7 302 1 194 295 211 0 chr15 43379456 43379551 -42316203 - MIR SINE MIR -111 151 37 1480 256 96 43 chr15 43379694 43380398 -42315356 + L1MC4 LINE L1 7147 7812 -230 2083 108 0 10 chr15 43380398 43380693 -42315061 + AluSg SINE Alu 1 292 -18 1480 256 96 43 chr15 43380693 43380777 -42314977 + L1MC4 LINE L1 7812 7890 -152 2139 100 7 0 chr15 43380777 43381067 -42314687 - AluSx SINE Alu -20 292 1 1480 256 96 43 chr15 43381067 43381108 -42314646 + L1MC4 LINE L1 7890 8021 -21 2162 112 3 3 chr15 43381202 43381506 -42314248 + AluSp SINE Alu 1 304 -9 265 311 99 0 chr15 43381559 43381703 -42314051 - MIR SINE MIR -67 141 15 593 201 76 57 chr15 43384092 43384356 -42311398 + MER1B DNA MER1_type 57 325 -14 360 0 0 0 chr15 43384409 43384449 -42311305 + (TG)n Simple_repeat Simple_repeat 1 40 0 1743 153 35 7 chr15 43385105 43385392 -42310362 - AluJb SINE Alu -17 295 1 582 302 47 22 chr15 43385392 43385624 -42310130 - MIR SINE MIR -5 257 20 1614 119 119 4 chr15 43385721 43385990 -42309764 + AluSg1 SINE Alu 1 300 -9 281 245 52 6 chr15 43386110 43386209 -42309545 - MIR SINE MIR -56 206 101 2506 52 0 3 chr15 43386431 43386739 -42309015 - AluY SINE Alu -4 307 1 2190 92 7 0 chr15 43386973 43387266 -42308488 - AluSq SINE Alu -18 295 1 2229 94 0 13 chr15 43387452 43387761 -42307993 - AluSx SINE Alu -7 305 1 1869 146 10 16 chr15 43387761 43388069 -42307685 - AluJb SINE Alu -5 307 1 2238 191 16 18 chr15 43388127 43388625 -42307129 - Charlie4a DNA MER1_type 0 508 12 180 293 0 81 chr15 43389605 43389704 -42306050 + MIR SINE MIR 98 188 -74 2216 106 0 10 chr15 43390205 43390517 -42305237 - AluSx SINE Alu -1 311 3 298 309 47 13 chr15 43390589 43390738 -42305016 + MIR SINE MIR 32 185 -77 364 210 37 0 chr15 43391157 43391238 -42304516 + MIR SINE MIR 31 114 -148 574 253 42 81 chr15 43391247 43391380 -42304374 - L1ME LINE L1 -563 5607 5470 2239 92 0 0 chr15 43391380 43391672 -42304082 - AluSq SINE Alu -17 296 5 574 253 42 81 chr15 43391672 43391846 -42303908 - L1ME LINE L1 -700 5470 5312 842 226 12 0 chr15 43391849 43392017 -42303737 - FRAM SINE Alu -5 171 2 1859 163 10 0 chr15 43392027 43392322 -42303432 - AluJb SINE Alu -14 298 1 266 290 23 15 chr15 43392327 43392458 -42303296 - L1ME LINE L1 -1119 5027 4896 2395 53 0 0 chr15 43392642 43392957 -42302797 - AluY SINE Alu 0 315 1 1158 114 6 6 chr15 43392959 43393134 -42302620 - AluSp SINE Alu -15 298 124 1613 173 23 16 chr15 43393202 43393509 -42302245 + AluJb SINE Alu 1 309 -3 234 0 0 0 chr15 43393610 43393636 -42302118 + (A)n Simple_repeat Simple_repeat 1 26 0 561 80 0 13 chr15 43393830 43393905 -42301849 + AluS SINE Alu 2 75 -237 239 65 0 0 chr15 43393906 43393937 -42301817 - Alu SINE Alu -271 31 1 1912 114 36 0 chr15 43394018 43394298 -42301456 + AluSx SINE Alu 1 290 -22 946 133 0 0 chr15 43394752 43394895 -42300859 + AluSp/q SINE Alu 171 313 0 385 330 65 32 chr15 43394932 43395117 -42300637 - MIR SINE MIR 0 262 72 1639 185 0 10 chr15 43395941 43396238 -42299516 - AluJo SINE Alu -18 294 1 252 170 0 0 chr15 43396324 43396371 -42299383 + FLAM SINE Alu 85 131 -2 815 271 122 34 chr15 43396586 43396620 -42299134 + MLT1J LTR MaLR 1 31 -480 1116 167 51 33 chr15 43396620 43396835 -42298919 - MER20 DNA MER1_type 0 219 1 815 271 122 34 chr15 43396835 43397209 -42298545 + MLT1J LTR MaLR 31 445 -66 188 299 197 28 chr15 43397438 43397692 -42298062 + L2 LINE L2 2364 2660 -654 273 342 44 76 chr15 43397904 43398220 -42297534 + L2 LINE L2 2945 3250 -22 363 342 86 11 chr15 43398226 43398413 -42297341 - MIR SINE MIR -1 261 61 342 0 0 0 chr15 43398612 43398650 -42297104 + (CA)n Simple_repeat Simple_repeat 1 38 0 965 160 252 29 chr15 43398691 43398929 -42296825 - AluSx SINE Alu -13 299 9 352 311 10 0 chr15 43398930 43399033 -42296721 + MIR3 SINE MIR 101 204 -4 1887 88 4 11 chr15 43399193 43399454 -42296300 + AluSq SINE Alu 1 259 -54 207 0 0 0 chr15 43399488 43399511 -42296243 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1657 73 229 0 chr15 43399517 43399762 -42295992 + AluY SINE Alu 1 301 0 307 272 221 6 chr15 43400344 43400502 -42295252 + MIR SINE MIR 51 242 -20 210 71 0 0 chr15 43400534 43400562 -42295192 + (T)n Simple_repeat Simple_repeat 1 28 0 1375 94 6 0 chr15 43400583 43400764 -42294990 - AluSq SINE Alu -131 182 1 2051 113 3 3 chr15 43401173 43401465 -42294289 + AluSx SINE Alu 1 292 -20 2010 108 14 0 chr15 43401479 43401766 -42293988 + AluSx SINE Alu 1 291 -21 933 67 17 0 chr15 43401766 43401885 -42293869 + AluY SINE Alu 1 121 -190 1094 161 0 78 chr15 43401985 43402203 -42293551 - AluJo SINE Alu -111 201 1 712 258 49 55 chr15 43402381 43402737 -42293017 + L1MC4a LINE L1 5565 5819 -302 2055 128 3 0 chr15 43402760 43403056 -42292698 - AluSp SINE Alu -16 297 1 2302 85 0 0 chr15 43403200 43403495 -42292259 + AluSg SINE Alu 1 295 -15 660 190 36 22 chr15 43403536 43403673 -42292081 - MIR SINE MIR -64 198 60 695 257 40 14 chr15 43403749 43403971 -42291783 - L1MC/D LINE L1 -1995 5813 5586 708 269 91 66 chr15 43403971 43404037 -42291717 - MLT1H LTR MaLR 0 549 486 2122 106 0 0 chr15 43404037 43404330 -42291424 + AluSg SINE Alu 1 293 -17 708 269 91 66 chr15 43404330 43404757 -42290997 - MLT1H LTR MaLR -63 486 1 736 275 18 33 chr15 43404758 43405034 -42290720 - L1MC/D LINE L1 -2219 5589 5318 311 226 93 56 chr15 43405229 43405411 -42290343 + MIR3 SINE MIR 1 188 -62 1233 186 23 0 chr15 43408861 43409081 -42286673 - AluJo SINE Alu -18 294 70 302 167 0 0 chr15 43410041 43410095 -42285659 - L2 LINE L2 -2 3311 3258 2735 147 13 2 chr15 43410298 43410762 -42284992 - L1MB3 LINE L1 -32 6151 5683 248 258 61 0 chr15 43410782 43410848 -42284906 - MIR SINE MIR -76 186 117 333 343 82 0 chr15 43411646 43411780 -42283974 - MIR SINE MIR -64 198 54 211 335 116 47 chr15 43413289 43413719 -42282035 - L2 LINE L2 0 3272 2813 1338 43 0 0 chr15 43414291 43414452 -42281302 - L1PA4 LINE L1 0 6155 5995 2285 77 3 0 chr15 43414452 43414750 -42281004 - AluSg1 SINE Alu -10 299 1 488 30 15 0 chr15 43415018 43415084 -42280670 + (TG)n Simple_repeat Simple_repeat 2 68 0 1748 69 0 0 chr15 43415405 43415621 -42280133 - AluY SINE Alu -95 216 1 475 264 149 14 chr15 43416454 43416662 -42279092 - L2 LINE L2 0 3313 3078 403 240 118 44 chr15 43416753 43417029 -42278725 + LTR33 LTR ERVL 115 449 -72 775 243 211 28 chr15 43417051 43417554 -42278200 - L2 LINE L2 -274 3039 2447 194 248 48 57 chr15 43417845 43417950 -42277804 + L2 LINE L2 2218 2321 -993 253 304 88 54 chr15 43418301 43418505 -42277249 + MIR SINE MIR 49 259 -3 * 409 237 67 27 chr15 43418490 43418645 -42277109 - MIR SINE MIR -40 168 6 581 237 22 0 chr15 43419758 43419893 -42275861 + MER91B DNA MER1_type 3 140 -50 356 282 39 0 chr15 43420076 43420179 -42275575 + MIR3 SINE MIR 83 189 -19 375 307 47 8 chr15 43420334 43420461 -42275293 + MIR SINE MIR 80 211 -51 334 290 41 41 chr15 43420692 43420913 -42274841 + L2 LINE L2 2841 3061 -211 214 374 49 8 chr15 43421002 43421125 -42274629 + MIR SINE MIR 108 235 -27 311 247 5 30 chr15 43421727 43421835 -42273919 - MIR SINE MIR -63 145 60 1310 88 0 16 chr15 43421995 43422177 -42273577 + AluSx SINE Alu 1 179 -133 2887 128 9 19 chr15 43422563 43422994 -42272760 - MSTC LTR MaLR 0 428 2 411 68 0 0 chr15 43422994 43423053 -42272701 + (TG)n Simple_repeat Simple_repeat 2 60 0 361 259 101 38 chr15 43423213 43423371 -42272383 + MIR3 SINE MIR 12 179 -29 363 243 10 29 chr15 43423763 43423866 -42271888 - MIR SINE MIR -59 149 49 322 314 9 0 chr15 43423905 43424010 -42271744 + L3b LINE CR1 1278 1383 -200 388 226 40 5 chr15 43424256 43424378 -42271376 - MIR SINE MIR -63 145 13 546 179 57 0 chr15 43424432 43424538 -42271216 + FLAM_A SINE Alu 10 121 -21 2451 73 0 0 chr15 43424550 43424872 -42270882 + AluSx SINE Alu 1 322 0 21 0 0 0 chr15 43424876 43424897 -42270857 + AT_rich Low_complexity Low_complexity 1 21 0 1367 164 122 35 chr15 43424953 43425240 -42270514 + AluJo SINE Alu 1 312 0 2128 126 23 19 chr15 43425347 43425657 -42270097 - AluSx SINE Alu -1 311 1 2042 177 0 0 chr15 43425659 43425969 -42269785 - AluJb SINE Alu 0 312 3 262 260 125 0 chr15 43425981 43426085 -42269669 - MER113 DNA MER1_type? -401 120 4 1445 131 79 4 chr15 43426220 43426472 -42269282 + MER1B DNA MER1_type 69 339 0 248 0 31 0 chr15 43426501 43426533 -42269221 + (TG)n Simple_repeat Simple_repeat 1 33 0 484 232 0 65 chr15 43427020 43427188 -42268566 + L1MC5 LINE L1 7072 7228 -733 1416 215 83 102 chr15 43427266 43427852 -42267902 + L1MC5 LINE L1 7238 7811 -150 2528 77 3 0 chr15 43427852 43428151 -42267603 + AluSp SINE Alu 3 302 -11 1416 215 83 102 chr15 43428151 43428253 -42267501 + L1MC5 LINE L1 7811 7913 -48 182 167 0 74 chr15 43428272 43428326 -42267428 + MIR SINE MIR 213 262 0 * 287 191 88 0 chr15 43428323 43428391 -42267363 - MIR SINE MIR -121 141 68 215 150 0 25 chr15 43428690 43428730 -42267024 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 2307 97 7 0 chr15 43429199 43429498 -42266256 - AluSp SINE Alu -12 301 1 180 0 0 0 chr15 43431577 43431597 -42264157 + (CTGGGG)n Simple_repeat Simple_repeat 2 21 0 1946 100 60 0 chr15 43433616 43433925 -42261829 - AluSq SINE Alu 0 327 3 234 0 0 0 chr15 43433929 43433955 -42261799 + (TTA)n Simple_repeat Simple_repeat 1 26 0 639 128 39 0 chr15 43433955 43434057 -42261697 - FLAM_C SINE Alu -27 116 11 234 131 0 98 chr15 43434174 43434235 -42261519 - L1MC4 LINE L1 0 8042 7988 444 143 0 0 chr15 43434240 43434303 -42261451 + AluS SINE Alu 6 68 -244 227 184 0 41 chr15 43434511 43434560 -42261194 - L1ME LINE L1 -504 5617 5571 2106 111 7 11 chr15 43434632 43434934 -42260820 - AluSg SINE Alu 0 303 3 1477 103 123 0 chr15 43435735 43435939 -42259815 - AluSg/x SINE Alu -14 298 70 808 131 75 0 chr15 43436039 43436199 -42259555 + L1MB4 LINE L1 6009 6180 0 951 124 0 48 chr15 43436380 43436525 -42259229 - FLAM_C SINE Alu -5 138 1 387 250 31 103 chr15 43437270 43437435 -42258319 - MER5B DNA MER1_type -21 168 2 2207 113 3 52 chr15 43437968 43438296 -42257458 - AluSx SINE Alu 0 312 1 1748 178 10 13 chr15 43438426 43438724 -42257030 + AluJo SINE Alu 5 301 -11 1948 133 10 45 chr15 43438727 43438872 -42256882 + AluSx SINE Alu 1 131 -181 2536 66 0 0 chr15 43438872 43439173 -42256581 + AluY SINE Alu 1 301 -10 1948 133 10 45 chr15 43439173 43439336 -42256418 + AluSx SINE Alu 131 298 -14 282 279 108 18 chr15 43439417 43439528 -42256226 + MIR SINE MIR 18 138 -124 21 0 0 0 chr15 43439914 43439935 -42255819 + AT_rich Low_complexity Low_complexity 1 21 0 1955 146 0 17 chr15 43440036 43440331 -42255423 + AluJo SINE Alu 2 291 -21 1288 189 91 142 chr15 43440354 43440924 -42254830 + L1MC4a LINE L1 5286 5826 -1982 1863 109 0 4 chr15 43440925 43441163 -42254591 + AluSc SINE Alu 1 237 -72 242 263 220 8 chr15 43441351 43441469 -42254285 - MIR SINE MIR -50 212 70 2393 99 0 0 chr15 43441575 43441868 -42253886 - AluSg SINE Alu -17 293 1 523 217 9 26 chr15 43442095 43442210 -42253544 + MER81 DNA DNA 1 113 -1 1037 176 6 0 chr15 43442465 43442635 -42253119 - FRAM SINE Alu -13 163 1 31 26 0 0 chr15 43442730 43442768 -42252986 + AT_rich Low_complexity Low_complexity 1 38 0 351 228 141 33 chr15 43443037 43443159 -42252595 + MIR SINE MIR 13 148 -60 2088 134 3 13 chr15 43443233 43443539 -42252215 + AluSx SINE Alu 1 303 -9 498 280 106 5 chr15 43443540 43443755 -42251999 - MIR SINE MIR -7 255 20 427 226 43 17 chr15 43444297 43444412 -42251342 - L1MC5 LINE L1 -843 7118 7001 937 308 69 15 chr15 43444997 43445056 -42250698 - LTR16A LTR ERVL -22 428 374 2077 138 0 7 chr15 43445056 43445361 -42250393 + AluSx SINE Alu 1 303 -9 937 308 69 15 chr15 43445361 43445707 -42250047 - LTR16A LTR ERVL -76 374 1 2052 117 3 14 chr15 43446217 43446507 -42249247 + AluSc SINE Alu 1 287 -22 286 317 161 26 chr15 43446727 43447118 -42248636 + L2 LINE L2 2818 3261 -11 1701 145 30 0 chr15 43447426 43447729 -42248025 - L1MC2 LINE L1 -11 6333 6022 1285 121 0 0 chr15 43448042 43448216 -42247538 - AluSg/x SINE Alu -6 306 133 2189 105 7 3 chr15 43448701 43448995 -42246759 - AluSx SINE Alu -17 295 1 289 167 0 111 chr15 43450038 43450110 -42245644 - MIR SINE MIR -101 107 44 2198 130 0 3 chr15 43450110 43450411 -42245343 + AluSx SINE Alu 1 300 -12 2370 95 3 0 chr15 43450411 43450705 -42245049 + AluSq SINE Alu 1 295 -18 2132 107 3 27 chr15 43450708 43451006 -42244748 + AluSc SINE Alu 1 291 -18 1038 121 5 79 chr15 43451006 43451196 -42244558 + AluSc SINE Alu 133 308 -1 223 210 148 30 chr15 43451234 43451345 -42244409 - MIR SINE MIR -83 125 16 291 341 53 24 chr15 43451731 43451977 -42243777 - MIR SINE MIR -2 260 8 242 316 0 13 chr15 43452570 43452646 -42243108 + L2 LINE L2 3234 3308 -5 360 279 0 0 chr15 43453060 43453139 -42242615 + MIR SINE MIR 79 157 -105 560 152 62 0 chr15 43453150 43453262 -42242492 + L2 LINE L2 3194 3312 -1 1935 148 10 3 chr15 43453547 43453838 -42241916 + AluSx SINE Alu 4 296 -16 22 0 0 0 chr15 43454918 43454940 -42240814 + AT_rich Low_complexity Low_complexity 1 22 0 2429 95 3 0 chr15 43456275 43456581 -42239173 + AluSp SINE Alu 1 307 -6 249 243 184 40 chr15 43456883 43456984 -42238770 - MIR SINE MIR -66 142 55 192 333 0 0 chr15 43457251 43457302 -42238452 - L2 LINE L2 0 3272 3222 186 43 0 0 chr15 43457636 43457659 -42238095 + (CA)n Simple_repeat Simple_repeat 2 24 0 349 87 0 29 chr15 43457695 43457764 -42237990 + (CA)n Simple_repeat Simple_repeat 2 68 0 192 313 15 15 chr15 43457827 43457894 -42237860 + MIR SINE MIR 88 154 -108 195 111 32 48 chr15 43458275 43458338 -42237416 + G-rich Low_complexity Low_complexity 2 63 0 282 157 20 0 chr15 43459065 43459116 -42236638 - MIR SINE MIR -61 147 96 556 171 27 7 chr15 43459509 43459655 -42236099 + GA-rich Low_complexity Low_complexity 4 152 0 2242 93 14 0 chr15 43459662 43459952 -42235802 + AluSp SINE Alu 1 294 -19 307 246 26 0 chr15 43459955 43460069 -42235685 + GA-rich Low_complexity Low_complexity 4 120 0 201 292 62 49 chr15 43460592 43460736 -42235018 - L2 LINE L2 -283 2989 2844 470 278 38 8 chr15 43460935 43461068 -42234686 - MIR SINE MIR -41 221 85 707 207 0 0 chr15 43461228 43461349 -42234405 - AluJb SINE Alu -36 276 156 280 364 91 36 chr15 43461561 43461924 -42233830 - L2 LINE L2 -425 2889 2507 2431 89 3 0 chr15 43461973 43462275 -42233479 + AluSx SINE Alu 1 303 -9 686 255 34 51 chr15 43462289 43462670 -42233084 - L2 LINE L2 -244 3069 2697 1114 158 65 33 chr15 43462680 43462895 -42232859 + AluJo SINE Alu 85 306 -6 2475 86 3 0 chr15 43462903 43463207 -42232547 + AluSp SINE Alu 7 311 -2 527 302 50 50 chr15 43463218 43463735 -42232019 - L2 LINE L2 -791 2523 2007 494 220 8 0 chr15 43464484 43464602 -42231152 + L1ME2 LINE L1 5557 5675 -489 2134 97 3 0 chr15 43464602 43464891 -42230863 + AluY SINE Alu 1 290 -21 2492 75 0 3 chr15 43464900 43465208 -42230546 + AluSx SINE Alu 1 307 -5 485 171 16 73 chr15 43465212 43465335 -42230419 + L1ME2 LINE L1 5933 6048 -116 675 191 173 40 chr15 43465335 43465508 -42230246 + MER3 DNA MER1_type 14 209 0 320 284 9 0 chr15 43465508 43465617 -42230137 + L1ME2 LINE L1 6045 6154 -10 2082 148 0 0 chr15 43465635 43465938 -42229816 + AluJo SINE Alu 7 309 -3 2201 133 0 0 chr15 43465939 43466239 -42229515 + AluSg SINE Alu 2 301 -9 495 236 9 0 chr15 43466247 43466357 -42229397 + FLAM_A SINE Alu 13 123 -19 1024 190 0 17 chr15 43466374 43466537 -42229217 - AluJb SINE Alu -15 297 136 1391 347 0 56 chr15 43466537 43466860 -42228894 - AluY SINE Alu -6 305 1 1024 190 0 17 chr15 43466860 43466875 -42228879 - AluJb SINE Alu -176 136 122 1824 255 63 18 chr15 43466916 43467523 -42228231 + L1MC4a LINE L1 5268 5901 -1907 1134 271 118 54 chr15 43466947 43467745 -42228009 + L1MB7 LINE L1 5297 6145 -39 * 945 216 128 41 chr15 43467854 43467913 -42227841 - MLT2E LTR ERVL -2 626 574 1929 130 6 60 chr15 43467913 43468062 -42227692 - MER1B DNA MER1_type -2376 334 179 2192 100 38 3 chr15 43468062 43468352 -42227402 + AluSq SINE Alu 1 300 -13 1929 130 6 60 chr15 43468352 43468555 -42227199 - MER1B DNA MER1_type -2531 179 1 945 216 128 41 chr15 43468555 43468893 -42226861 - MLT2E LTR ERVL -54 574 147 325 320 191 11 chr15 43468896 43469074 -42226680 + L1MC4a LINE L1 6126 6335 -1473 2070 120 48 3 chr15 43469135 43469426 -42226328 + AluSx SINE Alu 1 304 -8 2207 114 3 0 chr15 43469437 43469726 -42226028 + AluSx SINE Alu 6 295 -17 28 48 0 0 chr15 43470826 43470868 -42224886 + GC_rich Low_complexity Low_complexity 1 42 0 562 237 56 25 chr15 43471192 43471404 -42224350 - MIR SINE MIR -2 260 41 445 269 25 19 chr15 43472138 43472298 -42223456 - MIR3 SINE MIR -4 204 44 207 161 0 0 chr15 43472368 43472399 -42223355 + (TGG)n Simple_repeat Simple_repeat 1 31 0 361 240 273 13 chr15 43472399 43472553 -42223201 - MIR SINE MIR -22 240 47 2386 113 0 0 chr15 43472952 43473261 -42222493 - AluSc SINE Alu 0 309 1 1967 144 0 23 chr15 43473263 43473569 -42222185 - AluJo SINE Alu -13 299 1 180 200 29 0 chr15 43473840 43473875 -42221879 + L3 LINE CR1 1534 1569 -8 2005 116 4 0 chr15 43474000 43474267 -42221487 + AluSx SINE Alu 1 268 -44 206 270 210 30 chr15 43475033 43475133 -42220621 - MIR SINE MIR -132 130 13 2048 138 10 7 chr15 43475298 43475602 -42220152 - AluJo SINE Alu -7 305 1 247 192 0 90 chr15 43475618 43475696 -42220058 - L2 LINE L2 -292 2980 2910 203 262 0 33 chr15 43475684 43475745 -42220009 - MIR SINE MIR -78 130 72 * 283 276 79 8 chr15 43475977 43476191 -42219563 - L2 LINE L2 -304 2968 2677 189 0 0 0 chr15 43476494 43476515 -42219239 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 584 291 195 24 chr15 43476720 43477053 -42218701 + L3 LINE CR1 458 847 -730 957 129 7 7 chr15 43477058 43477197 -42218557 + AluJb SINE Alu 3 141 -171 28 29 0 0 chr15 43477221 43477256 -42218498 + AT_rich Low_complexity Low_complexity 1 35 0 2296 104 0 0 chr15 43477647 43477944 -42217810 + AluSx SINE Alu 1 297 -15 209 267 0 0 chr15 43478064 43478109 -42217645 + L3 LINE CR1 585 629 -948 27 0 0 0 chr15 43478426 43478453 -42217301 + AT_rich Low_complexity Low_complexity 1 27 0 282 302 123 30 chr15 43479202 43479437 -42216317 + L3 LINE CR1 1132 1388 -189 1704 192 14 7 chr15 43479528 43479825 -42215929 - AluJo SINE Alu -13 299 1 1765 160 40 7 chr15 43479934 43480234 -42215520 - AluJb SINE Alu 0 312 3 2348 99 0 3 chr15 43480344 43480647 -42215107 - AluSx SINE Alu -10 302 1 279 283 88 0 chr15 43481141 43481254 -42214500 + MIR SINE MIR 70 192 -70 397 184 68 10 chr15 43481509 43481612 -42214142 + Charlie4a DNA MER1_type 1 109 -399 1282 122 11 0 chr15 43481612 43481792 -42213962 - AluSg/x SINE Alu -10 300 119 1148 190 65 0 chr15 43481792 43482055 -42213699 + Charlie4a DNA MER1_type 115 394 -114 424 248 0 19 chr15 43482055 43482160 -42213594 + MLT1D LTR MaLR 1 103 -402 1137 171 112 2 chr15 43482175 43482411 -42213343 + MLT1D LTR MaLR 217 504 -1 376 164 109 18 chr15 43482429 43482539 -42213215 + Charlie4a DNA MER1_type 377 496 -12 363 280 99 87 chr15 43482931 43483356 -42212398 - MLT1H LTR MaLR 0 549 120 1205 179 120 26 chr15 43483596 43483904 -42211850 - L1MD3 LINE L1 -168 7827 7491 2362 101 0 3 chr15 43483917 43484225 -42211529 + AluSx SINE Alu 1 307 -5 328 346 7 20 chr15 43484696 43484849 -42210905 - MIR SINE MIR -77 185 35 256 298 67 10 chr15 43486113 43486217 -42209537 - L2 LINE L2 -5 3267 3158 2507 60 3 7 chr15 43486574 43486875 -42208879 - AluY SINE Alu -11 300 1 516 284 97 11 chr15 43487013 43487189 -42208565 - MIR3 SINE MIR -15 193 3 34 0 0 0 chr15 43488109 43488143 -42207611 + AT_rich Low_complexity Low_complexity 1 34 0 1968 158 18 0 chr15 43488154 43488439 -42207315 - AluJb SINE Alu -21 291 2 624 290 65 66 chr15 43488669 43488796 -42206958 - L2 LINE L2 0 3313 3187 3211 87 9 2 chr15 43488796 43489243 -42206511 + L1PA8 LINE L1 5723 6172 0 624 290 65 66 chr15 43489243 43489571 -42206183 - L2 LINE L2 -126 3187 1517 840 69 0 0 chr15 43490255 43490357 -42205397 - AluY SINE Alu -209 102 1 993 271 65 14 chr15 43490500 43490851 -42204903 - L1MC4a LINE L1 -1915 5893 5525 396 247 80 13 chr15 43491167 43491317 -42204437 - MER3 DNA MER1_type -20 189 30 1921 106 4 0 chr15 43491321 43491576 -42204178 + AluY SINE Alu 54 309 -2 433 148 15 54 chr15 43491582 43491865 -42203889 + GA-rich Low_complexity Low_complexity 1 271 0 237 95 24 24 chr15 43491969 43492011 -42203743 - Alu SINE Alu -260 42 1 2283 122 6 3 chr15 43492420 43492731 -42203023 + AluSx SINE Alu 1 312 0 309 165 38 63 chr15 43492733 43492812 -42202942 + L1MC3 LINE L1 5816 5892 -1916 5303 157 30 15 chr15 43492813 43493645 -42202109 + L1MC3 LINE L1 6738 7589 -196 2248 103 24 0 chr15 43493645 43493937 -42201817 + AluSx SINE Alu 1 299 -13 5303 157 30 15 chr15 43493937 43494112 -42201642 + L1MC3 LINE L1 7589 7760 -25 1068 181 6 6 chr15 43494112 43494294 -42201460 + AluJb SINE Alu 122 303 -9 1492 199 40 7 chr15 43494316 43494617 -42201137 + AluJo SINE Alu 1 311 -1 2202 168 68 11 chr15 43494669 43495301 -42200453 + L1ME4a LINE L1 4842 5500 -743 435 19 0 0 chr15 43495366 43495418 -42200336 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 2506 51 0 17 chr15 43495418 43495712 -42200042 - AluY SINE Alu -22 289 1 2056 147 0 14 chr15 43495724 43496017 -42199737 - AluJb SINE Alu -23 289 1 450 279 72 59 chr15 43496017 43496239 -42199515 - L1 LINE L1 -1637 4509 4285 962 183 0 0 chr15 43496265 43496429 -42199325 - MSTD LTR MaLR 0 396 233 390 252 8 92 chr15 43496955 43497086 -42198668 + MIR SINE MIR 73 192 -70 386 313 147 0 chr15 43497089 43497239 -42198515 - MIR3 SINE MIR -3 205 34 296 273 36 14 chr15 43497703 43497842 -42197912 - L1ME LINE L1 -342 5779 5638 581 286 132 15 chr15 43497999 43498408 -42197346 + L1ME4a LINE L1 5568 6024 -97 247 323 31 72 chr15 43498615 43498838 -42196916 + L2 LINE L2 2952 3165 -107 220 286 91 13 chr15 43499283 43499360 -42196394 + MIR SINE MIR 110 192 -70 291 333 111 0 chr15 43500022 43500184 -42195570 + MER117 DNA MER1_type 2 181 -16 1915 155 39 8 chr15 43500285 43500582 -42195172 + MER47A DNA MER2_type 1 287 -2036 414 0 0 0 chr15 43500582 43500628 -42195126 + (TA)n Simple_repeat Simple_repeat 2 47 0 2305 104 0 7 chr15 43500632 43500929 -42194825 - AluSc SINE Alu -14 295 1 1915 155 39 8 chr15 43500929 43500981 -42194773 + MER47A DNA MER2_type 289 366 0 508 226 183 0 chr15 43501562 43501699 -42194055 + MER5B DNA MER1_type 17 178 0 203 231 55 44 chr15 43502686 43502777 -42192977 + L2 LINE L2 2868 2959 -313 277 292 28 45 chr15 43502860 43503125 -42192629 + L1 LINE L1 4072 4336 -1810 399 321 87 85 chr15 43503245 43503544 -42192210 + L1 LINE L1 4463 4765 -1381 2046 128 3 7 chr15 43503544 43503841 -42191913 + AluSx SINE Alu 4 299 -13 399 321 87 85 chr15 43503841 43504024 -42191730 + L1 LINE L1 4765 4946 -1200 490 287 147 0 chr15 43504224 43504374 -42191380 + MER5B DNA MER1_type 7 178 0 257 272 106 15 chr15 43505068 43505215 -42190539 + MIR3 SINE MIR 29 186 -22 424 305 112 50 chr15 43506231 43507270 -42188484 - HAL1 LINE L1 -1186 1321 854 836 119 4 48 chr15 43507289 43508056 -42187698 + (TTC)n Simple_repeat Simple_repeat 1 733 0 318 316 111 47 chr15 43508089 43508475 -42187279 - HAL1 LINE L1 -1215 1292 882 349 170 9 45 chr15 43508477 43508589 -42187165 + CT-rich Low_complexity Low_complexity 1 108 0 673 116 5 53 chr15 43508590 43508779 -42186975 + (TTC)n Simple_repeat Simple_repeat 1 180 0 325 315 110 35 chr15 43508782 43509357 -42186397 - L1M4c LINE L1 -1205 1538 947 319 144 10 41 chr15 43509357 43509454 -42186300 + CT-rich Low_complexity Low_complexity 3 96 0 899 105 9 36 chr15 43509455 43509901 -42185853 + (TTC)n Simple_repeat Simple_repeat 1 433 0 765 93 4 61 chr15 43509915 43510161 -42185593 + (TTC)n Simple_repeat Simple_repeat 1 232 0 1520 112 5 0 chr15 43510169 43510374 -42185380 - AluSg/x SINE Alu -2 310 105 318 287 74 25 chr15 43610499 43610621 -42085133 - MIR SINE MIR -61 147 20 2358 97 0 0 chr15 43610678 43610978 -42084776 + AluSx SINE Alu 1 300 -12 528 260 84 19 chr15 43611246 43611400 -42084354 - MIR SINE MIR -50 212 49 2247 98 17 0 chr15 43611581 43611878 -42083876 + AluSg SINE Alu 1 302 -8 296 266 101 0 chr15 43611889 43611968 -42083786 - MER5A DNA MER1_type -43 146 60 431 273 81 12 chr15 43612411 43612572 -42083182 + MIR SINE MIR 20 191 -71 21 36 0 0 chr15 43612677 43612705 -42083049 + AT_rich Low_complexity Low_complexity 1 28 0 186 71 0 0 chr15 43612720 43612748 -42083006 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 2512 77 3 0 chr15 43612985 43613295 -42082459 + AluY SINE Alu 1 311 0 1758 181 19 16 chr15 43613887 43614197 -42081557 + AluJo SINE Alu 1 311 -1 2244 86 0 0 chr15 43614630 43614944 -42080810 + AluY SINE Alu 1 314 0 1375 95 0 0 chr15 43614945 43615124 -42080630 + AluSq SINE Alu 135 313 0 2546 66 0 19 chr15 43615168 43615485 -42080269 + AluY SINE Alu 1 311 0 2303 100 0 10 chr15 43616279 43616580 -42079174 + AluSx SINE Alu 1 298 -14 337 259 53 53 chr15 43616634 43616765 -42078989 + L2 LINE L2 2924 3054 -218 183 240 0 40 chr15 43616832 43616882 -42078872 + L2 LINE L2 3265 3312 -1 183 263 50 61 chr15 43621333 43621432 -42074322 - MIR SINE MIR -46 216 119 1905 243 97 30 chr15 43621450 43621682 -42074072 + MER20B DNA MER1_type 13 228 -555 2079 142 0 0 chr15 43621682 43621977 -42073777 + AluJb SINE Alu 1 295 -17 1905 243 97 30 chr15 43621977 43622467 -42073287 + MER20B DNA MER1_type 228 783 0 193 337 79 0 chr15 43622750 43622839 -42072915 + L2 LINE L2 2919 3014 -258 962 165 17 11 chr15 43622839 43623015 -42072739 + MER5B DNA MER1_type 1 177 -1 2389 112 0 0 chr15 43623131 43623443 -42072311 - AluSx SINE Alu 0 312 1 2187 120 17 0 chr15 43623593 43623892 -42071862 + AluSx SINE Alu 1 304 -8 350 294 231 13 chr15 43623994 43624139 -42071615 - L2 LINE L2 -353 2961 2849 2567 53 0 0 chr15 43624139 43624438 -42071316 + AluY SINE Alu 1 299 -12 350 294 231 13 chr15 43624438 43624530 -42071224 - L2 LINE L2 -465 2849 2672 499 271 126 5 chr15 43624652 43624859 -42070895 - L2 LINE L2 -1216 2098 1867 258 32 0 0 chr15 43625071 43625102 -42070652 + (T)n Simple_repeat Simple_repeat 1 31 0 1107 122 147 41 chr15 43625339 43625584 -42070170 + ORSL DNA AcHobo 1 271 -4 2283 92 0 10 chr15 43626727 43627021 -42068733 + AluSc SINE Alu 1 291 -18 248 256 179 51 chr15 43627025 43627142 -42068612 + L2 LINE L2 3181 3312 -1 2820 16 0 0 chr15 43627216 43627519 -42068235 + AluYa5 SINE Alu 1 303 -8 6633 119 131 45 chr15 43627699 43627793 -42067961 - Tigger2 DNA MER2_type -147 2571 2487 1344 177 52 62 chr15 43627793 43628081 -42067673 + AluSx SINE Alu 1 285 -27 180 0 0 0 chr15 43628081 43628101 -42067653 + (TA)n Simple_repeat Simple_repeat 2 21 0 6633 119 131 45 chr15 43628101 43628964 -42066790 - Tigger2 DNA MER2_type -231 2487 1465 2240 110 0 20 chr15 43628964 43629263 -42066491 + AluSx SINE Alu 1 293 -19 6633 119 131 45 chr15 43629263 43629627 -42066127 - Tigger2 DNA MER2_type -1253 1465 1134 189 0 0 0 chr15 43629627 43629648 -42066106 + (T)n Simple_repeat Simple_repeat 1 21 0 342 115 0 0 chr15 43629794 43629846 -42065908 + (A)n Simple_repeat Simple_repeat 1 52 0 370 309 5 86 chr15 43630237 43630447 -42065307 + MIR SINE MIR 20 212 -50 2377 108 0 0 chr15 43630496 43630793 -42064961 - AluSx SINE Alu -15 297 1 2000 159 0 3 chr15 43630900 43631202 -42064552 - AluJb SINE Alu -11 301 1 887 236 110 21 chr15 43631965 43632259 -42063495 - L2 LINE L2 -246 3067 2748 230 279 20 109 chr15 43632745 43632802 -42062952 + L2 LINE L2 2972 3032 -240 2162 123 0 0 chr15 43632802 43633107 -42062647 + AluSx SINE Alu 1 305 0 230 279 20 109 chr15 43633107 43633195 -42062559 + L2 LINE L2 3032 3105 -167 201 250 0 0 chr15 43633210 43633254 -42062500 + L2 LINE L2 3270 3313 0 487 246 87 8 chr15 43633633 43633759 -42061995 + MER91B DNA MER1_type 55 190 0 430 289 166 0 chr15 43634160 43634347 -42061407 + MIR SINE MIR 19 236 -26 509 276 120 18 chr15 43634351 43634576 -42061178 - MIR SINE MIR 0 262 15 248 355 47 24 chr15 43635433 43635602 -42060152 + L2 LINE L2 2792 2962 -310 484 238 157 29 chr15 43635912 43636122 -42059632 + MIR SINE MIR 14 250 -12 251 229 42 83 chr15 43636234 43636330 -42059424 + MIR SINE MIR 117 208 -54 787 250 27 5 chr15 43636368 43636556 -42059198 + MIR SINE MIR 63 254 -8 216 0 0 0 chr15 43637078 43637102 -42058652 + (T)n Simple_repeat Simple_repeat 1 24 0 888 167 86 0 chr15 43640408 43640582 -42055172 - MER5A DNA MER1_type 0 189 1 197 323 108 0 chr15 43640766 43640859 -42054895 - L2 LINE L2 -2 3270 3168 231 203 0 0 chr15 43640927 43640996 -42054758 + (TG)n Simple_repeat Simple_repeat 2 70 0 2179 124 3 0 chr15 43641042 43641341 -42054413 + AluSx SINE Alu 1 300 -12 201 268 169 56 chr15 43641665 43641807 -42053947 + MIR3 SINE MIR 34 191 -17 1900 150 30 33 chr15 43641824 43642191 -42053563 - MER47A DNA MER2_type 0 366 1 279 299 37 9 chr15 43643686 43643793 -42051961 - MIR SINE MIR -65 197 88 1371 249 91 27 chr15 43644052 43644501 -42051253 + MLT1H LTR MaLR 72 549 0 472 254 117 30 chr15 43644506 43644550 -42051204 - MLT1K LTR MaLR -6 582 543 2484 97 0 0 chr15 43644550 43644860 -42050894 - AluSx SINE Alu -2 310 1 472 254 117 30 chr15 43644860 43645011 -42050743 - MLT1K LTR MaLR -45 543 370 556 262 30 24 chr15 43645011 43645175 -42050579 + MLT1G1 LTR MaLR 1 165 -430 2402 91 3 0 chr15 43645180 43645478 -42050276 - AluSp SINE Alu -14 299 1 207 0 0 0 chr15 43645479 43645502 -42050252 + (T)n Simple_repeat Simple_repeat 1 23 0 1205 127 0 0 chr15 43645513 43645678 -42050076 + AluSg/x SINE Alu 132 296 -16 3057 172 53 78 chr15 43647232 43647650 -42048104 - L1ME1 LINE L1 -18 6148 5721 2164 117 7 7 chr15 43647650 43647958 -42047796 - AluSx SINE Alu -4 308 1 3057 172 53 78 chr15 43647958 43647982 -42047772 - L1ME1 LINE L1 -445 5721 5698 1913 140 17 17 chr15 43647982 43648282 -42047472 - AluSx SINE Alu -12 300 1 3057 172 53 78 chr15 43648282 43648702 -42047052 - L1ME1 LINE L1 -468 5698 5259 1784 137 15 11 chr15 43648702 43648972 -42046782 - AluJb SINE Alu -8 304 34 3057 172 53 78 chr15 43648972 43649166 -42046588 - L1ME1 LINE L1 -907 5259 5062 918 219 0 6 chr15 43649169 43649347 -42046407 - FRAM SINE Alu 0 176 1 489 179 8 95 chr15 43649347 43649448 -42046306 - L1ME1 LINE L1 -1090 5056 5006 1792 186 3 3 chr15 43649448 43649744 -42046010 + AluJb SINE Alu 1 296 -16 489 179 8 95 chr15 43649744 43649860 -42045894 - L1ME1 LINE L1 -1140 5006 4881 189 0 0 0 chr15 43649868 43649889 -42045865 + (T)n Simple_repeat Simple_repeat 1 21 0 2298 115 0 3 chr15 43650211 43650524 -42045230 - AluSx SINE Alu 0 312 1 832 143 0 23 chr15 43650654 43650787 -42044967 + FLAM_C SINE Alu 3 132 -1 398 198 11 11 chr15 43651212 43651303 -42044451 + MIR SINE MIR 61 151 -57 2417 88 0 7 chr15 43651491 43651798 -42043956 - AluY SINE Alu -6 305 1 2230 105 26 7 chr15 43651805 43652109 -42043645 - AluSx SINE Alu -1 311 2 183 319 51 85 chr15 43652741 43652976 -42042778 + L2 LINE L2 2992 3218 -54 377 304 8 0 chr15 43653621 43653746 -42042008 + MIR SINE MIR 65 190 -72 * 645 247 53 7 chr15 43653745 43653895 -42041859 - MER5B DNA MER1_type -18 160 4 2446 100 0 3 chr15 43653914 43654225 -42041529 - AluSx SINE Alu -2 310 1 8697 47 1 0 chr15 43654608 43655576 -42040178 - LTR5 LTR ERVK 0 969 1 2474 71 0 23 chr15 43655659 43655968 -42039786 + AluSx SINE Alu 1 302 -10 1775 171 10 27 chr15 43656983 43657281 -42038473 - AluJo SINE Alu -19 293 1 370 257 62 0 chr15 43657338 43657411 -42038343 - L2 LINE L2 -12 3301 3217 2522 79 3 0 chr15 43657411 43657716 -42038038 + AluSp SINE Alu 1 306 -7 370 257 62 0 chr15 43657716 43657755 -42037999 - L2 LINE L2 -96 3217 3182 746 113 0 0 chr15 43657927 43658033 -42037721 + U6 snRNA snRNA 1 106 -1 2262 129 0 3 chr15 43658046 43658357 -42037397 + AluSx SINE Alu 1 310 -2 728 167 8 8 chr15 43658428 43658554 -42037200 - FRAM SINE Alu -19 157 32 180 0 0 0 chr15 43658572 43658592 -42037162 + (TA)n Simple_repeat Simple_repeat 2 21 0 895 257 44 58 chr15 43658636 43658946 -42036808 - L1MEc LINE L1 -3594 2621 2361 2309 107 3 7 chr15 43658946 43659254 -42036500 - AluSx SINE Alu -5 307 1 895 257 44 58 chr15 43659254 43659501 -42036253 - L1MEc LINE L1 -3854 2361 2112 1950 137 20 7 chr15 43659522 43659814 -42035940 - AluSx SINE Alu -16 296 1 315 302 105 11 chr15 43659831 43660041 -42035713 - L1MEc LINE L1 -4548 1848 1598 259 152 0 22 chr15 43660173 43660219 -42035535 + Alu SINE Alu 1 45 -255 322 277 131 15 chr15 43660375 43660505 -42035249 - MER63A DNA MER1_type 0 210 66 231 113 113 0 chr15 43660514 43660567 -42035187 + L1MB1 LINE L1 6060 6118 -50 1096 169 3 152 chr15 43660687 43660963 -42034791 + AluJo SINE Alu 1 214 -88 226 0 59 0 chr15 43660963 43660997 -42034757 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1096 169 3 152 chr15 43660997 43661075 -42034679 + AluJo SINE Alu 214 302 0 24 0 0 0 chr15 43661076 43661100 -42034654 + AT_rich Low_complexity Low_complexity 1 24 0 578 120 33 0 chr15 43661106 43661198 -42034556 + L1MB1 LINE L1 6031 6125 -43 2309 70 40 10 chr15 43661198 43661500 -42034254 + AluY SINE Alu 1 311 0 2041 145 10 0 chr15 43661523 43661826 -42033928 + AluSx SINE Alu 1 306 -6 27 0 0 0 chr15 43661849 43661876 -42033878 + AT_rich Low_complexity Low_complexity 1 27 0 238 246 143 0 chr15 43661930 43662056 -42033698 - L1MEc LINE L1 -5965 240 97 519 165 10 39 chr15 43662245 43662348 -42033406 - AluJ/FLAM SINE Alu -212 100 1 679 257 127 39 chr15 43662577 43662915 -42032839 - MLT1F1 LTR MaLR 0 595 228 2510 62 0 37 chr15 43662936 43663070 -42032684 + AluY SINE Alu 1 138 -173 1077 84 0 0 chr15 43663070 43663225 -42032529 + L1PA5 LINE L1 5999 6153 -1 2510 62 0 37 chr15 43663225 43663413 -42032341 + AluY SINE Alu 138 311 0 797 224 24 0 chr15 43663417 43663587 -42032167 - MLT1F1 LTR MaLR -369 198 25 2270 114 3 16 chr15 43663706 43664023 -42031731 - AluSq SINE Alu 0 313 1 585 209 91 170 chr15 43664582 43664806 -42030948 + MLT1K LTR MaLR 7 247 -341 2640 68 0 0 chr15 43664806 43665117 -42030637 + AluY SINE Alu 1 311 0 585 209 91 170 chr15 43665117 43665485 -42030269 + MLT1K LTR MaLR 247 552 -36 2168 118 0 50 chr15 43665690 43666012 -42029742 + AluSx SINE Alu 5 310 -2 397 259 114 0 chr15 43666289 43666420 -42029334 - MIR SINE MIR -57 205 60 2549 84 0 0 chr15 43666452 43666762 -42028992 + AluSx SINE Alu 1 310 -2 241 232 18 0 chr15 43668669 43668725 -42027029 - MER115 DNA AcHobo -609 84 28 2631 64 0 0 chr15 43668766 43669077 -42026677 + AluY SINE Alu 1 311 0 370 217 21 82 chr15 43669443 43669575 -42026179 + MIR SINE MIR 31 204 -58 1950 151 0 13 chr15 43669575 43669874 -42025880 + AluJo SINE Alu 1 295 -17 370 217 21 82 chr15 43669874 43669930 -42025824 + MIR SINE MIR 204 262 0 700 302 124 43 chr15 43672105 43672221 -42023533 - L2 LINE L2 -8 3305 3200 2793 75 3 0 chr15 43672221 43672582 -42023172 + THE1B LTR MaLR 3 364 0 700 302 124 43 chr15 43672582 43672909 -42022845 - L2 LINE L2 -113 3200 2826 970 180 0 57 chr15 43673096 43673324 -42022430 + L1ME1 LINE L1 3474 3688 -2458 1935 147 7 3 chr15 43673324 43673617 -42022137 + AluJb SINE Alu 6 299 -13 3993 210 71 49 chr15 43673617 43673855 -42021899 + L1ME1 LINE L1 4031 4262 -1904 2328 91 0 0 chr15 43673855 43674171 -42021583 + AluSx SINE Alu 1 316 0 3993 210 71 49 chr15 43674171 43675429 -42020325 + L1ME1 LINE L1 4262 5491 -675 2453 90 0 10 chr15 43675429 43675730 -42020024 + AluSx SINE Alu 1 298 -14 2084 141 0 10 chr15 43675734 43676038 -42019716 + AluSx SINE Alu 1 301 -11 3993 210 71 49 chr15 43676038 43676347 -42019407 + L1ME1 LINE L1 5493 5794 -372 1331 114 44 161 chr15 43676347 43676506 -42019248 + AluSx SINE Alu 1 100 -202 360 0 0 0 chr15 43676506 43676546 -42019208 + (CA)n Simple_repeat Simple_repeat 2 41 0 1331 114 44 161 chr15 43676546 43676728 -42019026 + AluSx SINE Alu 100 302 0 3993 210 71 49 chr15 43676728 43676740 -42019014 + L1ME1 LINE L1 5794 5804 -362 957 144 0 46 chr15 43676740 43676914 -42018840 + FRAM SINE Alu 1 166 0 2445 89 0 0 chr15 43676914 43677217 -42018537 + AluY SINE Alu 1 303 -8 3993 210 71 49 chr15 43677217 43677374 -42018380 + L1ME1 LINE L1 5803 6051 -115 195 129 0 0 chr15 43677380 43677411 -42018343 + (T)n Simple_repeat Simple_repeat 1 31 0 2370 107 0 3 chr15 43677416 43677724 -42018030 - AluSc SINE Alu -2 307 1 1768 175 0 7 chr15 43677728 43678014 -42017740 - AluJo SINE Alu -19 293 10 471 227 62 0 chr15 43678016 43678144 -42017610 + L1MA10 LINE L1 6198 6333 -1 735 282 175 39 chr15 43678146 43678569 -42017185 - L2 LINE L2 -589 2725 2197 2231 91 14 10 chr15 43678569 43678865 -42016889 - AluSq SINE Alu -16 297 1 735 282 175 39 chr15 43678865 43679034 -42016720 - L2 LINE L2 -1117 2197 2052 1789 189 79 53 chr15 43679040 43679511 -42016243 - MLT1D LTR MaLR 0 505 23 253 318 89 58 chr15 43679778 43679867 -42015887 + L2 LINE L2 2674 2759 -554 2522 74 0 6 chr15 43679867 43680178 -42015576 - AluSc SINE Alu 0 309 1 253 318 89 58 chr15 43680178 43680665 -42015089 + L2 LINE L2 2759 3267 -46 283 267 0 27 chr15 43680783 43680858 -42014896 + L2 LINE L2 2926 2998 -274 382 224 31 0 chr15 43680873 43680971 -42014783 + MIR SINE MIR 15 115 -147 1910 125 35 55 chr15 43680976 43681100 -42014654 + AluSx SINE Alu 1 126 -186 2218 105 0 60 chr15 43681100 43681432 -42014322 + AluSx SINE Alu 1 312 0 1910 125 35 55 chr15 43681432 43681618 -42014136 + AluSx SINE Alu 126 305 -7 251 234 149 28 chr15 43681779 43681886 -42013868 + L2 LINE L2 3169 3288 -25 199 188 0 94 chr15 43684369 43684433 -42011321 - MIR3 SINE MIR -48 160 103 40 0 0 0 chr15 43685342 43685382 -42010372 + AT_rich Low_complexity Low_complexity 1 40 0 2269 120 0 7 chr15 43685414 43685723 -42010031 - AluSq SINE Alu -6 307 1 2123 129 7 7 chr15 43686089 43686399 -42009355 - AluSx SINE Alu -2 310 1 185 383 47 9 chr15 43686651 43686758 -42008996 - L2 LINE L2 -5 3308 3198 446 211 109 41 chr15 43687612 43687759 -42007995 + MIR SINE MIR 94 250 -12 35 24 0 0 chr15 43687949 43687991 -42007763 + AT_rich Low_complexity Low_complexity 1 42 0 295 301 142 0 chr15 43688246 43688359 -42007395 - MER117 DNA MER1_type -68 129 1 357 285 77 0 chr15 43689269 43689399 -42006355 - MIR SINE MIR -51 211 72 190 195 26 91 chr15 43689600 43689615 -42006139 + MER5A DNA MER1_type 3 12 -177 439 203 224 7 chr15 43689615 43689758 -42005996 - MER5A DNA MER1_type -1 188 15 781 139 12 81 chr15 43689771 43689878 -42005876 - MER5B DNA MER1_type -15 163 71 2048 91 68 20 chr15 43689878 43690174 -42005580 - AluSg SINE Alu 0 310 1 781 139 12 81 chr15 43690174 43690238 -42005516 - MER5B DNA MER1_type -107 71 4 521 200 187 20 chr15 43690253 43690403 -42005351 - MER5A DNA MER1_type -6 183 9 2008 129 3 7 chr15 43690931 43691217 -42004537 + AluSq SINE Alu 5 289 -24 301 79 0 0 chr15 43691295 43691333 -42004421 + Alu SINE Alu 1 38 -264 1116 167 40 22 chr15 43691434 43691656 -42004098 - AluJb SINE Alu -86 226 1 302 114 0 0 chr15 43691656 43691700 -42004054 - AluSc SINE Alu -166 133 90 1053 109 7 0 chr15 43691703 43691841 -42003913 + AluSx SINE Alu 1 139 -173 1034 124 0 26 chr15 43691895 43692048 -42003706 + AluSx SINE Alu 134 282 -30 597 294 39 9 chr15 43692055 43692286 -42003468 - L1MC4 LINE L1 -423 7619 7382 2104 123 0 0 chr15 43692801 43693098 -42002656 - AluSc SINE Alu 0 299 3 2370 91 3 0 chr15 43693100 43693396 -42002358 - AluSp SINE Alu -16 297 1 207 100 0 0 chr15 43693396 43693426 -42002328 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1502 142 0 0 chr15 43693426 43693638 -42002116 - AluSg/x SINE Alu -28 282 71 2015 164 3 0 chr15 43693638 43693936 -42001818 - AluSx SINE Alu -12 300 1 586 202 54 31 chr15 43693946 43694075 -42001679 - FLAM_A SINE Alu -1 132 1 1832 161 17 3 chr15 43694107 43694398 -42001356 + AluJb SINE Alu 5 299 -13 2123 129 7 0 chr15 43694422 43694725 -42001029 + AluSx SINE Alu 1 305 -7 730 274 132 36 chr15 43694949 43694984 -42000770 + L1ME LINE L1 4457 4487 -1677 2383 87 7 0 chr15 43694984 43695284 -42000470 + AluSg SINE Alu 3 304 -6 730 274 132 36 chr15 43695284 43696131 -41999623 + L1ME LINE L1 4487 5440 -724 1408 160 16 85 chr15 43696173 43696479 -41999275 + AluJb SINE Alu 1 285 -27 2368 84 13 10 chr15 43696556 43696867 -41998887 - AluSq SINE Alu 0 313 2 518 204 80 0 chr15 43697168 43697281 -41998473 + MER33 DNA MER1_type 19 140 -184 678 135 0 18 chr15 43697284 43697395 -41998359 - AluSq/x SINE Alu -203 110 2 914 68 0 8 chr15 43697606 43697723 -41998031 - U5 snRNA snRNA 0 116 1 519 165 0 0 chr15 43698655 43698746 -41997008 - AluJ/FLAM SINE Alu -220 92 2 364 120 10 160 chr15 43698904 43698965 -41996789 - L1MB8 LINE L1 -6 6172 6130 2516 48 0 3 chr15 43698965 43699259 -41996495 + AluY SINE Alu 1 293 -18 364 120 10 160 chr15 43699259 43699297 -41996457 - L1MB8 LINE L1 -48 6130 6088 349 261 135 0 chr15 43700837 43700948 -41994806 - L2 LINE L2 -16 3297 3172 344 175 18 18 chr15 43701105 43701219 -41994535 + CT-rich Low_complexity Low_complexity 3 116 0 2634 55 3 0 chr15 43701221 43701531 -41994223 - AluY SINE Alu 0 311 1 1958 108 7 7 chr15 43701551 43701829 -41993925 - AluSx SINE Alu -32 280 3 1803 183 135 16 chr15 43702020 43702457 -41993297 + Charlie4a DNA MER1_type 18 506 -2 2108 134 13 0 chr15 43702563 43702870 -41992884 - AluY SINE Alu 0 311 1 2077 118 14 0 chr15 43702915 43703241 -41992513 - AluSx SINE Alu 0 330 1 1088 168 111 8 chr15 43703248 43703492 -41992262 - L1MB2 LINE L1 -1 6170 5902 1767 90 5 0 chr15 43703500 43703723 -41992031 - AluSg/x SINE Alu -17 293 70 233 97 0 0 chr15 43703723 43703754 -41992000 - Alu SINE Alu -272 31 1 2248 106 0 7 chr15 43703791 43704092 -41991662 - AluSx SINE Alu -13 299 1 235 232 51 14 chr15 43705835 43705875 -41989879 + (TA)n Simple_repeat Simple_repeat 1 38 -105 1283 189 121 8 chr15 43705875 43706139 -41989615 + AluJb SINE Alu 1 294 -18 235 232 51 14 chr15 43706139 43706236 -41989518 + (TA)n Simple_repeat Simple_repeat 38 143 0 1667 178 37 0 chr15 43706618 43706916 -41988838 + AluJb SINE Alu 1 309 -3 2114 122 0 10 chr15 43707343 43707638 -41988116 + AluSx SINE Alu 1 292 -20 2326 106 3 0 chr15 43707818 43708129 -41987625 + AluSq SINE Alu 2 313 0 249 254 63 0 chr15 43708236 43708299 -41987455 - MIR SINE MIR -116 146 80 300 283 25 33 chr15 43708413 43708533 -41987221 - MER5A DNA MER1_type -6 183 65 1187 153 53 18 chr15 43708952 43709180 -41986574 + MER46A DNA MER2_type 1 236 0 2064 116 0 43 chr15 43709181 43709508 -41986246 - AluSq SINE Alu 0 313 1 335 230 72 36 chr15 43709512 43709651 -41986103 - L1ME LINE L1 -731 5431 5288 865 241 132 5 chr15 43709833 43710045 -41985709 - MER8 DNA MER2_type 0 239 1 3192 179 77 28 chr15 43710068 43710149 -41985605 - L1MB7 LINE L1 -1 6183 6107 2411 83 0 0 chr15 43710149 43710437 -41985317 + AluSg SINE Alu 1 288 -22 2168 94 7 14 chr15 43710439 43710736 -41985018 + AluY SINE Alu 1 295 -16 3192 179 77 28 chr15 43710736 43711321 -41984433 - L1MB7 LINE L1 -77 6107 5474 2256 116 13 0 chr15 43711321 43711624 -41984130 - AluSx SINE Alu -5 307 1 3192 179 77 28 chr15 43711624 43711670 -41984084 - L1MB7 LINE L1 -710 5474 5432 1400 172 102 4 chr15 43711672 43711928 -41983826 - AluJo SINE Alu -5 307 27 692 117 28 0 chr15 43711947 43712055 -41983699 - L1P4 LINE L1 -727 5441 5328 1758 126 11 11 chr15 43712055 43712325 -41983429 - AluSq SINE Alu -6 307 38 692 117 28 0 chr15 43712325 43712339 -41983415 - L1P4 LINE L1 -840 5328 5316 1696 121 117 11 chr15 43712449 43712722 -41983032 + AluSg1 SINE Alu 1 302 -7 2055 145 0 0 chr15 43713251 43713547 -41982207 - AluSx SINE Alu -16 296 1 2332 110 0 3 chr15 43713591 43713901 -41981853 + AluSc SINE Alu 1 309 0 2167 98 20 17 chr15 43713933 43714229 -41981525 - AluSq SINE Alu -16 297 1 465 185 65 0 chr15 43714557 43714649 -41981105 + FLAM_A SINE Alu 29 126 -16 2241 96 3 20 chr15 43714652 43714953 -41980801 + AluSq SINE Alu 2 297 -16 1737 121 13 0 chr15 43715036 43715275 -41980479 - AluSx SINE Alu -70 242 1 985 188 9 57 chr15 43715310 43715539 -41980215 + AluJb SINE Alu 1 218 -94 769 71 0 0 chr15 43715540 43715638 -41980116 + AluY SINE Alu 152 249 -62 1374 158 0 4 chr15 43715638 43715866 -41979888 + AluJo SINE Alu 85 311 -1 2766 51 0 0 chr15 43715953 43716285 -41979469 - L1PA5 LINE L1 -2 6152 5821 2412 79 16 0 chr15 43716301 43716604 -41979150 - AluY SINE Alu -3 308 1 2272 83 0 40 chr15 43716815 43717115 -41978639 - AluSx SINE Alu -21 291 4 2249 104 0 3 chr15 43717342 43717639 -41978115 + AluSc SINE Alu 1 296 -13 2605 45 0 22 chr15 43719022 43719336 -41976418 + AluY SINE Alu 1 307 -4 1737 156 32 3 chr15 43719374 43719656 -41976098 - AluJb SINE Alu -21 291 2 860 144 0 8 chr15 43719796 43719928 -41975826 + FLAM_C SINE Alu 1 131 -2 21 36 0 0 chr15 43719928 43719956 -41975798 + AT_rich Low_complexity Low_complexity 1 28 0 426 196 105 15 chr15 43720789 43720922 -41974832 - MER112 DNA MER1_type -11 249 105 1116 128 6 0 chr15 43720925 43721089 -41974665 + AluSx SINE Alu 1 165 -147 612 161 125 0 chr15 43721484 43721596 -41974158 - AluJb SINE Alu -16 296 171 386 177 6 24 chr15 43721596 43721675 -41974079 - AluS SINE Alu -242 61 1 23 54 0 0 chr15 43722992 43723029 -41972725 + AT_rich Low_complexity Low_complexity 1 37 0 685 208 38 19 chr15 43723603 43723762 -41971992 - MIR SINE MIR -28 234 73 315 0 0 0 chr15 43724053 43724088 -41971666 + (TG)n Simple_repeat Simple_repeat 1 35 0 288 0 0 0 chr15 43724087 43724119 -41971635 + (GA)n Simple_repeat Simple_repeat 1 32 0 * 2407 103 0 0 chr15 43724599 43724910 -41970844 + AluSx SINE Alu 1 311 -1 1802 100 4 0 chr15 43725049 43725329 -41970425 - AluSx SINE Alu 0 335 55 303 309 32 24 chr15 43725551 43725677 -41970077 - MIR SINE MIR -66 142 16 1718 159 43 0 chr15 43726393 43726669 -41969085 + AluJo SINE Alu 4 291 -21 1713 96 13 9 chr15 43729167 43729397 -41966357 + AluSq SINE Alu 5 235 -78 581 270 27 5 chr15 43729397 43729582 -41966172 + MIR SINE MIR 30 218 -44 235 284 0 15 chr15 43730609 43730676 -41965078 + L2 LINE L2 2703 2768 -546 * 247 343 118 59 chr15 43730644 43730848 -41964906 + L2 LINE L2 3041 3256 -16 1819 128 0 23 chr15 43731286 43731544 -41964210 - AluSx SINE Alu -60 252 1 696 116 36 18 chr15 43731666 43731811 -41963943 + FLAM_C SINE Alu 4 150 0 1187 144 0 6 chr15 43731815 43731988 -41963766 + AluSx SINE Alu 1 172 -140 313 65 16 48 chr15 43731997 43732059 -41963695 + (TA)n Simple_repeat Simple_repeat 2 61 0 24 32 0 0 chr15 43732357 43732388 -41963366 + AT_rich Low_complexity Low_complexity 1 31 0 2406 84 0 3 chr15 43732484 43732782 -41962972 + AluSc SINE Alu 1 297 -12 216 0 0 0 chr15 43733231 43733255 -41962499 + (T)n Simple_repeat Simple_repeat 1 24 0 2351 109 0 0 chr15 43733345 43733649 -41962105 - AluSx SINE Alu -8 304 1 2250 91 0 20 chr15 43734353 43734651 -41961103 + AluSg SINE Alu 1 292 -18 2258 100 10 7 chr15 43734831 43735132 -41960622 - AluSg SINE Alu -8 302 1 1977 132 17 3 chr15 43735220 43735515 -41960239 - AluSx SINE Alu -13 299 1 286 259 166 58 chr15 43737015 43737358 -41958396 + L2 LINE L2 1363 1742 -1572 227 366 62 0 chr15 43737343 43737455 -41958299 + L2 LINE L2 3139 3257 -15 * 2235 116 0 3 chr15 43737471 43737772 -41957982 + AluSq SINE Alu 1 300 -13 322 249 239 15 chr15 43737929 43738126 -41957628 + L2 LINE L2 1579 1819 -1495 692 191 29 7 chr15 43738171 43738307 -41957447 - FRAM SINE Alu -37 139 1 1109 78 6 0 chr15 43738584 43738763 -41956991 + (TA)n Simple_repeat Simple_repeat 1 180 0 2493 49 0 33 chr15 43738771 43739075 -41956679 - AluY SINE Alu -16 295 2 52 30 0 0 chr15 43739078 43739144 -41956610 + AT_rich Low_complexity Low_complexity 1 66 0 514 228 96 0 chr15 43739249 43739385 -41956369 - MIR SINE MIR -86 176 28 786 148 81 13 chr15 43739424 43739594 -41956160 - L1PA10 LINE L1 0 6168 5998 1877 134 25 4 chr15 43739632 43739907 -41955847 + AluJo SINE Alu 6 286 -26 2226 73 33 0 chr15 43739915 43740224 -41955530 - AluSp SINE Alu 0 318 1 1515 154 68 19 chr15 43740297 43740563 -41955191 + AluJb SINE Alu 1 279 -33 815 126 0 0 chr15 43740571 43740682 -41955072 + AluSg/x SINE Alu 182 292 -20 1919 83 105 11 chr15 43740710 43740987 -41954767 + AluSg SINE Alu 1 303 -7 2271 89 3 0 chr15 43741006 43741325 -41954429 + AluSp SINE Alu 1 320 0 686 203 0 36 chr15 43741637 43741775 -41953979 + FLAM_A SINE Alu 1 133 0 755 161 20 70 chr15 43741778 43741814 -41953940 + L1M4 LINE L1 4992 5028 -1118 1770 122 50 21 chr15 43741814 43742093 -41953661 + AluSx SINE Alu 1 287 -25 2334 73 17 0 chr15 43742093 43742380 -41953374 + AluSp SINE Alu 1 292 -21 2155 103 7 20 chr15 43742382 43742520 -41953234 + AluSx SINE Alu 1 139 -173 2560 65 7 0 chr15 43742520 43742827 -41952927 + AluSx SINE Alu 1 309 -3 2155 103 7 20 chr15 43742827 43742990 -41952764 + AluSx SINE Alu 139 298 -14 755 161 20 70 chr15 43742990 43743148 -41952606 + L1M4 LINE L1 5028 5180 -966 823 223 43 5 chr15 43743156 43743340 -41952414 + AluJo SINE Alu 1 191 -121 2090 117 4 0 chr15 43743340 43743655 -41952099 + AluSx SINE Alu 1 316 0 550 200 152 0 chr15 43743657 43743802 -41951952 + L1MD1 LINE L1 5944 6110 -132 295 200 89 67 chr15 43743803 43743893 -41951861 - LTR26 LTR ERV1 0 603 512 24 0 0 0 chr15 43743901 43743925 -41951829 + AT_rich Low_complexity Low_complexity 1 24 0 1296 255 58 74 chr15 43743952 43744111 -41951643 - LTR26 LTR ERV1 -81 522 362 1799 141 84 34 chr15 43744111 43744466 -41951288 + THE1C LTR MaLR 1 373 -2 2258 117 3 3 chr15 43744466 43744774 -41950980 + AluSq SINE Alu 1 308 -5 1296 255 58 74 chr15 43744774 43745117 -41950637 - LTR26 LTR ERV1 -240 363 25 3060 109 13 18 chr15 43745117 43745566 -41950188 - MER83 LTR ERV1 -1 447 1 1296 255 58 74 chr15 43745566 43745591 -41950163 - LTR26 LTR ERV1 -578 25 1 468 146 101 0 chr15 43745589 43745678 -41950076 + MER4A LTR ERV1 1 98 -566 * 1586 130 33 76 chr15 43745678 43745982 -41949772 + MER4A LTR ERV1 261 607 -57 1967 119 26 55 chr15 43745982 43746293 -41949461 - AluSg SINE Alu -8 302 1 1586 130 33 76 chr15 43746293 43746349 -41949405 + MER4A LTR ERV1 607 664 0 305 98 0 0 chr15 43746359 43746400 -41949354 - MER41A LTR ERV1 0 554 514 2498 108 11 24 chr15 43746400 43746769 -41948985 + THE1B LTR MaLR 1 364 0 6758 83 6 0 chr15 43746769 43747625 -41948129 + THE1B-int LTR MaLR 1 861 -719 275 105 0 0 chr15 43747625 43747663 -41948091 + Alu SINE Alu 1 38 -262 964 69 0 0 chr15 43747667 43747783 -41947971 + THE1B LTR MaLR 249 364 0 * 3473 119 32 2 chr15 43747783 43748286 -41947468 - MER41C LTR ERV1 -36 518 1 788 120 30 15 chr15 43748286 43748419 -41947335 + L1MD1 LINE L1 6108 6242 0 2101 108 14 0 chr15 43748477 43748776 -41946978 + AluSp SINE Alu 3 305 0 2010 119 4 0 chr15 43748876 43749153 -41946601 - AluSx SINE Alu -14 298 21 302 215 38 0 chr15 43749194 43749273 -41946481 - LTR36 LTR ERV1 0 611 530 1949 117 21 3 chr15 43749277 43749560 -41946194 + AluY SINE Alu 4 291 -20 1577 181 7 17 chr15 43749575 43749867 -41945887 + AluSx SINE Alu 1 289 -23 451 189 150 121 chr15 43749890 43750196 -41945558 - LTR36 LTR ERV1 -183 428 114 803 147 22 7 chr15 43750198 43750334 -41945420 - AluJb SINE Alu -19 293 156 415 68 0 17 chr15 43750335 43750394 -41945360 - Alu SINE Alu -247 62 5 268 148 131 0 chr15 43750398 43750459 -41945295 - LTR36 LTR ERV1 -490 121 53 199 237 136 34 chr15 43750506 43750624 -41945130 + L2 LINE L2 2930 3059 -213 202 313 7 7 chr15 43751173 43751317 -41944437 + (CCG)n Simple_repeat Simple_repeat 1 144 0 1545 54 0 0 chr15 43752162 43752347 -41943407 + AluSg1 SINE Alu 1 185 -124 651 71 0 0 chr15 43752347 43752431 -41943323 + AluSg1 SINE Alu 218 301 -9 277 289 0 0 chr15 43752580 43752670 -41943084 - L1MC4 LINE L1 -1339 6703 6614 490 275 62 6 chr15 43752693 43752871 -41942883 - MIR SINE MIR -44 218 31 2428 86 3 3 chr15 43752942 43753245 -41942509 - AluSp SINE Alu -10 303 1 2830 111 17 12 chr15 43753302 43753709 -41942045 - MER1A DNA MER1_type -120 409 1 1164 135 0 0 chr15 43753854 43754017 -41941737 - AluSg/x SINE Alu -15 295 133 22 0 0 0 chr15 43754212 43754234 -41941520 + AT_rich Low_complexity Low_complexity 1 22 0 2284 83 17 3 chr15 43754255 43754557 -41941197 + AluSq SINE Alu 1 306 -7 538 105 13 12 chr15 43754566 43754796 -41940958 + AluJb SINE Alu 1 308 -4 593 268 21 7 chr15 43754797 43754939 -41940815 - FRAM SINE Alu -33 143 1 310 252 46 15 chr15 43754942 43755073 -41940681 + L3 LINE CR1 1149 1283 -294 230 171 37 110 chr15 43755195 43755277 -41940477 - MER5A DNA MER1_type -113 76 1 2894 16 0 0 chr15 43757227 43757536 -41938218 - AluYb8 SINE Alu -9 309 1 250 286 48 65 chr15 43757866 43757930 -41937824 - L2 LINE L2 -836 2478 2414 2014 164 0 7 chr15 43757930 43758240 -41937514 - AluJo SINE Alu -4 308 1 250 286 48 65 chr15 43758240 43758343 -41937411 - L2 LINE L2 -900 2414 2314 2661 98 22 3 chr15 43758574 43758931 -41936823 + THE1B LTR MaLR 1 364 0 810 181 18 6 chr15 43758931 43759102 -41936652 + MIR SINE MIR 90 262 0 371 333 87 35 chr15 43759133 43759790 -41935964 - L2 LINE L2 -1387 1927 1237 2369 104 0 9 chr15 43760256 43760572 -41935182 - AluSq SINE Alu 0 313 1 378 185 31 0 chr15 43760726 43760791 -41934963 + MER58B DNA MER1_type 238 304 -37 2315 107 0 0 chr15 43761226 43761526 -41934228 + AluSc SINE Alu 1 300 -9 183 255 0 0 chr15 43761540 43761587 -41934167 - L2 LINE L2 0 3313 3267 333 322 81 46 chr15 43761608 43761686 -41934068 + L1ME LINE L1 5555 5629 -492 2353 83 20 0 chr15 43761686 43761986 -41933768 - AluSq SINE Alu -7 306 1 333 322 81 46 chr15 43761986 43762168 -41933586 + L1ME LINE L1 5629 5824 -297 2062 138 0 16 chr15 43762348 43762659 -41933095 - AluSx SINE Alu -6 306 1 295 150 0 33 chr15 43762913 43762973 -41932781 - L1MC5 LINE L1 -273 7688 7631 252 177 194 0 chr15 43763063 43763125 -41932629 + MER81 DNA DNA 41 114 0 2346 91 16 7 chr15 43763359 43763666 -41932088 + AluSp SINE Alu 1 310 -3 1418 157 0 104 chr15 43763898 43763994 -41931760 + AluJo SINE Alu 35 139 -173 1955 69 0 0 chr15 43763994 43764225 -41931529 - AluY SINE Alu -20 291 61 1418 157 0 104 chr15 43764225 43764260 -41931494 + AluJo SINE Alu 139 176 -136 1814 169 13 7 chr15 43764260 43764567 -41931187 + AluJb SINE Alu 1 309 -3 1418 157 0 104 chr15 43764567 43764733 -41931021 + AluJo SINE Alu 176 302 -10 227 215 15 31 chr15 43764881 43764946 -41930808 + GA-rich Low_complexity Low_complexity 4 67 0 299 167 0 0 chr15 43765597 43765645 -41930109 + MER82 DNA MER2_type 605 652 -1 22 43 0 21 chr15 43766857 43766877 -41928877 + AT_rich Low_complexity Low_complexity 1 20 -26 2343 72 0 16 chr15 43766877 43767182 -41928572 + AluY SINE Alu 1 300 -11 22 43 0 21 chr15 43767182 43767208 -41928546 + AT_rich Low_complexity Low_complexity 20 46 0 2354 109 0 6 chr15 43767989 43768302 -41927452 + AluSx SINE Alu 1 311 -1 1362 175 178 131 chr15 43768489 43768934 -41926820 - L1MC5 LINE L1 -30 7931 7362 382 135 108 14 chr15 43768934 43769008 -41926746 + MER33 DNA MER1_type 1 81 -243 1362 175 178 131 chr15 43769008 43769276 -41926478 - L1MC5 LINE L1 -599 7362 7108 275 276 112 20 chr15 43770037 43770189 -41925565 - L2 LINE L2 -33 3280 3115 2243 110 3 0 chr15 43770528 43770828 -41924926 + AluSg SINE Alu 1 301 -9 704 285 147 59 chr15 43770855 43770933 -41924821 - L2 LINE L2 -199 3073 3003 216 0 0 0 chr15 43770933 43770957 -41924797 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2083 136 0 0 chr15 43770959 43771245 -41924509 - AluSx SINE Alu -25 287 2 704 285 147 59 chr15 43771245 43771490 -41924264 - L2 LINE L2 -269 3003 2781 862 150 0 0 chr15 43771490 43771623 -41924131 - FLAM_C SINE Alu 0 133 1 704 285 147 59 chr15 43771623 43772117 -41923637 - L2 LINE L2 -491 2781 2164 1204 105 0 0 chr15 43772757 43772919 -41922835 + AluY SINE Alu 136 297 -14 2137 124 0 10 chr15 43772927 43773226 -41922528 + AluSx SINE Alu 1 296 -16 2343 88 0 22 chr15 43773999 43774316 -41921438 - AluSx SINE Alu -2 310 1 217 0 61 0 chr15 43774318 43774351 -41921403 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2380 68 0 0 chr15 43774354 43774633 -41921121 - AluSc SINE Alu -30 279 1 263 170 0 0 chr15 43774726 43774773 -41920981 - U2 snRNA snRNA -141 47 1 1921 217 103 78 chr15 43774819 43775206 -41920548 - L1ME LINE L1 -599 5563 5187 2622 56 3 0 chr15 43775206 43775509 -41920245 - AluY SINE Alu -7 304 1 1921 217 103 78 chr15 43775509 43775526 -41920228 - L1ME LINE L1 -975 5187 5172 2359 116 0 0 chr15 43775526 43775836 -41919918 - AluSx SINE Alu -1 311 2 1921 217 103 78 chr15 43775836 43775917 -41919837 - L1ME LINE L1 -990 5172 5095 1559 154 13 56 chr15 43775917 43776249 -41919505 - AluJb SINE Alu 0 312 1 1921 217 103 78 chr15 43776249 43776910 -41918844 - L1ME LINE L1 -1067 5095 4415 2250 107 0 25 chr15 43776945 43777263 -41918491 - AluSq SINE Alu -3 310 1 474 182 11 0 chr15 43777348 43777436 -41918318 - AluSc SINE Alu 0 309 221 708 256 114 33 chr15 43777443 43777771 -41917983 - L1ME LINE L1 -2131 4015 3642 2339 109 0 0 chr15 43777771 43778074 -41917680 + AluSx SINE Alu 1 303 -9 708 256 114 33 chr15 43778074 43778174 -41917580 - L1ME LINE L1 -2504 3642 3552 1497 123 0 5 chr15 43778708 43778911 -41916843 + AluSc SINE Alu 87 288 -21 1790 162 0 26 chr15 43779216 43779519 -41916235 - AluJb SINE Alu -17 295 1 1581 154 39 11 chr15 43779522 43779678 -41916076 - AluJo SINE Alu -19 293 124 2261 104 0 3 chr15 43779678 43779986 -41915768 - AluSc SINE Alu -2 307 1 1581 154 39 11 chr15 43779986 43780114 -41915640 - AluJo SINE Alu -188 124 1 577 302 120 33 chr15 43780115 43780424 -41915330 - L1MDa LINE L1 -1228 5312 5031 2000 137 9 19 chr15 43780424 43780739 -41915015 - AluSx SINE Alu 0 312 1 577 302 120 33 chr15 43780739 43780952 -41914802 - L1MDa LINE L1 -1509 5031 1084 268 303 22 11 chr15 43780955 43781044 -41914710 - L2 LINE L2 -3 3269 3180 222 348 58 0 chr15 43781399 43781537 -41914217 + MIR SINE MIR 56 201 -61 33 56 0 0 chr15 43782501 43782555 -41913199 + GC_rich Low_complexity Low_complexity 1 54 0 374 302 74 13 chr15 43782866 43783015 -41912739 + L2 LINE L2 3114 3271 -1 647 228 44 0 chr15 43783284 43783442 -41912312 + MER69A DNA AcHobo 2 166 -11 233 303 79 0 chr15 43783541 43783630 -41912124 + MIR SINE MIR 19 114 -94 333 260 104 0 chr15 43783778 43783874 -41911880 - MIR SINE MIR -73 189 84 239 300 56 11 chr15 43784324 43784414 -41911340 + MIR SINE MIR 75 168 -94 2186 110 3 3 chr15 43784441 43784750 -41911004 - AluSq SINE Alu -4 309 1 222 272 22 54 chr15 43784756 43784848 -41910906 - MIR SINE MIR -65 197 109 940 229 82 0 chr15 43785279 43785524 -41910230 - LTR16A LTR ERVL -134 316 52 858 261 140 23 chr15 43785822 43786276 -41909478 - MLT1H LTR MaLR 0 549 1 325 323 69 22 chr15 43786291 43786523 -41909231 - L2 LINE L2 -219 3053 2811 429 272 217 0 chr15 43787037 43787217 -41908537 - MIR SINE MIR -8 254 36 243 404 26 9 chr15 43788174 43788288 -41907466 - MER5A DNA MER1_type -40 149 34 955 211 6 17 chr15 43788328 43788508 -41907246 + MER5B DNA MER1_type 1 178 0 281 316 0 0 chr15 43788690 43788766 -41906988 + MIR SINE MIR 78 153 -55 235 219 0 0 chr15 43789127 43789168 -41906586 + L2 LINE L2 3136 3176 -96 454 319 74 48 chr15 43789170 43789480 -41906274 - L2 LINE L2 -1 3312 2995 2149 105 0 10 chr15 43790654 43790950 -41904804 - AluSx SINE Alu -19 293 1 374 204 54 84 chr15 43791758 43791925 -41903829 + HAL1 LINE L1 2346 2507 0 273 315 210 7 chr15 43791976 43792119 -41903635 + MIR3 SINE MIR 17 188 -20 248 302 47 70 chr15 43792126 43792255 -41903499 - MER5A DNA MER1_type -24 165 40 2240 92 3 0 chr15 43793131 43793424 -41902330 + AluSx SINE Alu 1 294 -18 305 229 208 0 chr15 43793434 43793530 -41902224 + FRAM SINE Alu 48 163 -3 574 317 106 18 chr15 43793576 43793803 -41901951 + MIR SINE MIR 6 252 -10 1050 111 74 37 chr15 43794399 43794491 -41901263 - MLT1D LTR MaLR -309 196 109 2135 92 53 0 chr15 43794491 43794774 -41900980 + AluSx SINE Alu 1 298 -14 1050 111 74 37 chr15 43794774 43794870 -41900884 - MLT1D LTR MaLR -396 109 1 214 273 18 73 chr15 43795993 43796103 -41899651 - L2 LINE L2 0 3272 3169 293 261 42 17 chr15 43796942 43797061 -41898693 + LTR67 LTR ERVL 432 553 -4 361 264 80 0 chr15 43797247 43797372 -41898382 + L2 LINE L2 3138 3272 0 570 278 62 10 chr15 43798434 43798643 -41897111 - MIR SINE MIR -35 227 8 315 308 45 6 chr15 43798666 43798825 -41896929 - MIR SINE MIR -59 203 35 465 286 89 41 chr15 43799238 43799676 -41896078 - LTR33 LTR ERVL -9 512 15 297 295 13 47 chr15 43799726 43799875 -41895879 + L2 LINE L2 2698 2841 -473 283 234 65 0 chr15 43799935 43800012 -41895742 - MIR SINE MIR -107 101 20 243 301 75 30 chr15 43800169 43800302 -41895452 - MIR SINE MIR -70 192 54 193 152 0 0 chr15 43801441 43801474 -41894280 + L2 LINE L2 3027 3059 -254 1218 239 229 8 chr15 43801644 43802206 -41893548 - L2 LINE L2 -8 3305 2640 343 264 72 40 chr15 43802587 43802712 -41893042 + MIR3 SINE MIR 4 132 -76 182 370 74 15 chr15 43803119 43803254 -41892500 + MIR3 SINE MIR 11 153 -55 931 192 67 116 chr15 43803552 43803973 -41891781 + LTR37B LTR ERV1 10 409 -59 1797 154 16 23 chr15 43803991 43804129 -41891625 + AluJo SINE Alu 1 138 -174 2216 96 3 3 chr15 43804129 43804431 -41891323 + AluSp SINE Alu 1 302 -11 1797 154 16 23 chr15 43804431 43804597 -41891157 + AluJo SINE Alu 138 303 -9 7528 121 78 106 chr15 43808126 43809872 -41885882 - pTR5 LTR ERV1 0 2438 741 249 287 50 30 chr15 43809944 43810015 -41885739 + MIR SINE MIR 67 142 -120 1963 137 0 10 chr15 43810015 43810329 -41885425 + AluSx SINE Alu 1 311 -1 249 287 50 30 chr15 43810329 43810358 -41885396 + MIR SINE MIR 142 169 -93 262 297 0 0 chr15 43810387 43810461 -41885293 - MIR SINE MIR -140 122 49 193 297 81 81 chr15 43810519 43810667 -41885087 + MIR SINE MIR 22 169 -93 378 192 164 0 chr15 43810807 43810911 -41884843 - MIR SINE MIR 0 262 142 531 269 86 38 chr15 43810913 43811072 -41884682 - MIR SINE MIR -60 202 31 3236 139 62 6 chr15 43811072 43811570 -41884184 + MER1A DNA MER1_type 1 526 -1 531 269 86 38 chr15 43811570 43811596 -41884158 - MIR SINE MIR -231 31 8 275 109 0 0 chr15 43811650 43811696 -41884058 - Alu SINE Alu -1 300 255 910 93 0 0 chr15 43811710 43811828 -41883926 - AluSq/x SINE Alu -166 147 30 210 258 91 0 chr15 43811888 43811954 -41883800 - MIR3 SINE MIR -15 193 122 303 244 23 23 chr15 43812083 43812169 -41883585 - MIR3 SINE MIR -28 180 95 205 226 0 2 chr15 43812699 43812745 -41883009 - MIR SINE MIR -53 155 110 180 326 200 0 chr15 43813451 43813546 -41882208 + L2 LINE L2 3140 3253 -19 417 299 124 28 chr15 43813724 43813901 -41881853 + MIR3 SINE MIR 15 208 0 215 250 94 0 chr15 43814077 43814141 -41881613 - L2 LINE L2 -2 3311 3242 1200 187 0 14 chr15 43814430 43814649 -41881105 - AluJb SINE Alu -16 296 81 212 262 16 16 chr15 43814650 43814711 -41881043 - MIR SINE MIR -66 142 82 588 268 81 38 chr15 43814865 43815100 -41880654 - L3 LINE CR1 -7 1570 1326 336 240 60 10 chr15 43815108 43815208 -41880546 - MIR SINE MIR -122 140 36 412 280 84 21 chr15 43815799 43815942 -41879812 - MIR3 SINE MIR -46 162 11 1157 172 38 5 chr15 43818189 43818398 -41877356 - AluJo SINE Alu -18 294 79 399 361 101 18 chr15 43818427 43818704 -41877050 - HAL1 LINE L1 -1226 1281 982 2173 99 10 10 chr15 43819818 43820122 -41875632 + AluSx SINE Alu 1 304 -8 765 269 64 28 chr15 43820262 43820511 -41875243 + MIR SINE MIR 2 259 -3 235 212 30 15 chr15 43821144 43821210 -41874544 - MIR SINE MIR -60 148 82 415 137 11 21 chr15 43821449 43821544 -41874210 + MER53 DNA DNA 92 185 -4 257 330 9 28 chr15 43822115 43822221 -41873533 - MIR SINE MIR -73 189 86 196 279 0 0 chr15 43822330 43822373 -41873381 + MIR SINE MIR 109 151 -111 1982 60 54 101 chr15 43822628 43822944 -41872810 - AluY SINE Alu 0 301 1 224 261 72 14 chr15 43823231 43823300 -41872454 + MIR3 SINE MIR 112 184 -24 324 303 98 8 chr15 43823446 43823568 -41872186 + MIR SINE MIR 47 179 -83 815 174 42 11 chr15 43824215 43824405 -41871349 + L1MD3 LINE L1 7787 7982 -13 272 237 53 26 chr15 43824548 43824624 -41871130 + MIR SINE MIR 184 261 -1 320 250 40 10 chr15 43824633 43824733 -41871021 - MIR SINE MIR -63 145 43 309 284 14 0 chr15 43825481 43825555 -41870199 + MIR SINE MIR 79 153 -55 2077 121 3 0 chr15 43826417 43826722 -41869032 - AluSg SINE Alu -4 306 1 279 400 115 37 chr15 43827565 43828025 -41867729 + L3 LINE CR1 11 506 -1071 184 309 134 21 chr15 43828173 43828270 -41867484 + L3 LINE CR1 1339 1446 -131 687 302 53 12 chr15 43829180 43829425 -41866329 - MIR SINE MIR -6 256 2 190 317 17 0 chr15 43831140 43831200 -41864554 - MIR SINE MIR -63 145 85 210 143 0 0 chr15 43831411 43831446 -41864308 + (A)n Simple_repeat Simple_repeat 1 35 0 2221 108 27 0 chr15 43832015 43832312 -41863442 + AluSx SINE Alu 1 305 -7 212 0 36 0 chr15 43832916 43832944 -41862810 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 182 369 68 0 chr15 43833380 43833483 -41862271 - L2 LINE L2 -90 3182 3073 2214 124 10 0 chr15 43833568 43833875 -41861879 + AluSx SINE Alu 1 310 -2 215 163 20 0 chr15 43833875 43833913 -41861841 + GA-rich Low_complexity Low_complexity 10 51 0 1048 256 79 36 chr15 43833997 43834388 -41861366 + L2 LINE L2 2889 3296 -17 192 77 0 0 chr15 43835358 43835384 -41860370 + (T)n Simple_repeat Simple_repeat 1 26 0 318 209 27 27 chr15 43835572 43835682 -41860072 - Charlie5 DNA MER1_type -66 2546 2437 2512 73 0 3 chr15 43835684 43835985 -41859769 - AluSx SINE Alu -12 300 1 2095 119 6 13 chr15 43836504 43836815 -41858939 - AluSx SINE Alu -3 309 1 620 77 11 0 chr15 43836874 43836965 -41858789 + (TCTA)n Simple_repeat Simple_repeat 1 92 0 349 321 88 0 chr15 43836987 43837124 -41858630 + MER117 DNA MER1_type 1 149 -48 219 243 14 14 chr15 43837316 43837362 -41858392 + (TATG)n Simple_repeat Simple_repeat 2 50 -25 1988 116 76 0 chr15 43837362 43837637 -41858117 - AluSq SINE Alu -17 296 1 219 243 14 14 chr15 43837637 43837664 -41858090 + (TATG)n Simple_repeat Simple_repeat 49 75 0 2013 152 0 0 chr15 43837778 43838081 -41857673 - AluJb SINE Alu -9 303 1 2301 103 0 7 chr15 43838225 43838391 -41857363 - AluSq SINE Alu -14 299 134 2273 109 0 3 chr15 43838391 43838694 -41857060 - AluSq SINE Alu -11 302 1 2301 103 0 7 chr15 43838694 43838828 -41856926 - AluSq SINE Alu -179 134 1 567 216 22 15 chr15 43838892 43839026 -41856728 - L1MC3 LINE L1 -160 7625 7491 2328 108 0 0 chr15 43839953 43840258 -41855496 - AluY SINE Alu -6 305 1 1455 274 97 22 chr15 43840451 43840745 -41855009 - L2 LINE L2 0 3313 3042 2283 92 0 0 chr15 43840745 43841052 -41854702 + AluSx SINE Alu 1 307 0 1455 274 97 22 chr15 43841052 43841481 -41854273 - L2 LINE L2 -271 3042 2520 581 304 83 30 chr15 43841491 43841853 -41853901 - MLT1K LTR MaLR -21 567 187 278 200 189 33 chr15 43842144 43842234 -41853520 - L2 LINE L2 -33 3239 3136 269 200 0 0 chr15 43842500 43842545 -41853209 + L2 LINE L2 3006 3050 -263 371 284 209 13 chr15 43842546 43842785 -41852969 - MLT1J LTR MaLR -2 509 224 432 198 35 35 chr15 43843005 43843121 -41852633 + MLT1J LTR MaLR 1 116 -395 2150 104 31 0 chr15 43843121 43843408 -41852346 + AluSg SINE Alu 1 296 -14 22 0 0 0 chr15 43843408 43843430 -41852324 + AT_rich Low_complexity Low_complexity 1 22 0 259 210 136 12 chr15 43843434 43843515 -41852239 + MLT1J LTR MaLR 105 195 -316 336 193 114 70 chr15 43843556 43843670 -41852084 - L1ME3A LINE L1 -8 6162 6044 374 162 14 95 chr15 43843670 43843744 -41852010 + Alu SINE Alu 235 301 -1 1209 167 101 8 chr15 43843744 43844002 -41851752 - L1ME3A LINE L1 -116 6054 5773 891 183 36 94 chr15 43844101 43844129 -41851625 + MER58A DNA MER1_type 1 29 -2391 2290 99 0 0 chr15 43844129 43844421 -41851333 - AluSc SINE Alu -17 292 1 891 183 36 94 chr15 43844421 43844468 -41851286 + MER58A DNA MER1_type 29 77 -2343 189 0 0 0 chr15 43844468 43844489 -41851265 + (TAA)n Simple_repeat Simple_repeat 2 22 0 891 183 36 94 chr15 43844489 43844636 -41851118 + MER58A DNA MER1_type 77 211 -13 2143 120 7 0 chr15 43844639 43844931 -41850823 + AluSx SINE Alu 1 294 -18 271 221 13 78 chr15 43844941 43845018 -41850736 + MLT1J LTR MaLR 337 408 -103 288 203 0 58 chr15 43845147 43845216 -41850538 + MIR SINE MIR 41 105 -103 357 218 0 0 chr15 43845918 43845996 -41849758 + L1ME LINE L1 5652 5729 -392 1805 147 33 0 chr15 43846002 43846275 -41849479 + AluJb SINE Alu 5 286 -26 2295 103 3 10 chr15 43846290 43846600 -41849154 + AluSx SINE Alu 1 308 -4 1621 174 51 7 chr15 43847404 43847697 -41848057 - AluJo SINE Alu -6 306 1 2384 94 0 22 chr15 43847872 43848191 -41847563 + AluSx SINE Alu 1 312 0 1150 153 21 70 chr15 43848844 43848924 -41846830 + L1M4 LINE L1 5528 5610 -574 2358 64 0 3 chr15 43848924 43849239 -41846515 + AluY SINE Alu 1 314 0 1150 153 21 70 chr15 43849239 43849300 -41846454 + L1M4 LINE L1 5610 5672 -512 2206 115 3 0 chr15 43849300 43849596 -41846158 - AluSx SINE Alu -14 298 2 1150 153 21 70 chr15 43849596 43849694 -41846060 + L1M4 LINE L1 5672 5757 -427 1344 78 0 0 chr15 43849694 43849860 -41845894 + LTR43 LTR ERV1 1 166 -436 1944 127 55 0 chr15 43849860 43850151 -41845603 + AluJb SINE Alu 1 307 -5 2189 113 0 3 chr15 43853061 43853361 -41842393 + AluSx SINE Alu 1 299 -13 2198 106 26 7 chr15 43853628 43853930 -41841824 + AluSx SINE Alu 1 308 -4 197 297 0 0 chr15 43854197 43854261 -41841493 + MIR SINE MIR 119 182 -80 580 252 29 39 chr15 43854304 43854510 -41841244 + MIR SINE MIR 58 261 -1 1387 146 110 4 chr15 43854593 43854883 -41840871 + AluJo SINE Alu 1 317 0 25 0 0 0 chr15 43855352 43855377 -41840377 + GC_rich Low_complexity Low_complexity 1 25 0 247 202 138 28 chr15 43855627 43855739 -41840015 - MIR SINE MIR -76 132 21 1814 160 17 0 chr15 43856280 43856574 -41839180 - AluJb SINE Alu -13 299 1 370 134 15 0 chr15 43857135 43857202 -41838552 - MER3 DNA MER1_type -5 204 137 2287 107 3 3 chr15 43857214 43857522 -41838232 + AluSx SINE Alu 1 308 -4 1595 238 119 27 chr15 43858828 43859274 -41836480 + L2 LINE L2 2171 2574 -739 225 0 0 0 chr15 43859274 43859299 -41836455 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1455 168 40 40 chr15 43859302 43859599 -41836155 - AluJo SINE Alu -15 297 1 1595 238 119 27 chr15 43859599 43860093 -41835661 + L2 LINE L2 2575 3297 -16 621 78 165 19 chr15 43860103 43860206 -41835548 + AluJb SINE Alu 191 308 -4 22 0 0 0 chr15 43860333 43860355 -41835399 + AT_rich Low_complexity Low_complexity 1 22 0 2284 81 7 0 chr15 43860382 43860665 -41835089 - AluSp SINE Alu -26 287 3 378 235 56 56 chr15 43861631 43861723 -41834031 + L1MC5 LINE L1 7752 7846 -115 1901 131 64 0 chr15 43861723 43862006 -41833748 + AluJb SINE Alu 1 301 -11 378 235 56 56 chr15 43862006 43862075 -41833679 + L1MC5 LINE L1 7845 7913 -48 2109 107 31 7 chr15 43862242 43862531 -41833223 - AluSc SINE Alu -13 296 1 746 193 0 15 chr15 43862880 43863015 -41832739 - FLAM_A SINE Alu 0 133 1 515 307 48 22 chr15 43863817 43864048 -41831706 - MIR SINE MIR 0 262 26 384 252 215 16 chr15 43864739 43865238 -41830516 - L1MC4 LINE L1 -33 8009 7281 303 207 141 59 chr15 43865291 43865426 -41830328 - L1MC4a LINE L1 -1584 6224 6079 2285 250 110 75 chr15 43865482 43866892 -41828862 - L1MC4a LINE L1 -341 5827 5836 1596 190 15 0 chr15 43866892 43867160 -41828594 - AluJb SINE Alu -4 308 37 2285 250 110 75 chr15 43867160 43867338 -41828416 - L1MC4a LINE L1 -331 5837 5667 526 225 39 34 chr15 43867354 43867532 -41828222 - L1MC4a LINE L1 -2376 5432 5254 201 162 0 0 chr15 43867593 43867630 -41828124 + T-rich Low_complexity Low_complexity 1 37 0 2135 129 0 3 chr15 43867635 43867929 -41827825 + AluSx SINE Alu 6 298 -14 26 30 0 0 chr15 43867999 43868032 -41827722 + AT_rich Low_complexity Low_complexity 1 33 0 233 273 27 55 chr15 43868032 43868142 -41827612 - L1MC5 LINE L1 -33 7928 7822 1855 153 3 7 chr15 43868863 43869157 -41826597 - AluJb SINE Alu -19 293 1 200 234 21 158 chr15 43869278 43869440 -41826314 - MIR SINE MIR -63 145 9 * 374 298 217 6 chr15 43869439 43869651 -41826103 + MIR SINE MIR 5 262 0 549 264 203 15 chr15 43869655 43869780 -41825974 - L2 LINE L2 0 3313 3213 2312 108 0 13 chr15 43869780 43870086 -41825668 + AluSx SINE Alu 1 302 -10 2435 79 3 7 chr15 43870086 43870389 -41825365 + AluSp SINE Alu 1 302 -11 549 264 203 15 chr15 43870389 43870592 -41825162 - L2 LINE L2 -99 3214 2922 3926 183 76 97 chr15 43870599 43870739 -41825015 + L1MB7 LINE L1 3673 3814 -2370 1967 154 10 6 chr15 43870739 43871050 -41824704 - AluSx SINE Alu 0 312 1 3926 183 76 97 chr15 43871050 43871298 -41824456 + L1MB7 LINE L1 3814 4066 -2118 778 182 8 0 chr15 43871298 43871430 -41824324 + FLAM_A SINE Alu 1 133 0 3926 183 76 97 chr15 43871430 43872012 -41823742 + L1MB7 LINE L1 4066 4659 -1525 2156 121 0 14 chr15 43872012 43872301 -41823453 + AluSx SINE Alu 1 285 -27 3926 183 76 97 chr15 43872301 43872387 -41823367 + L1MB7 LINE L1 4659 4745 -1439 198 0 0 0 chr15 43872387 43872409 -41823345 + (TTA)n Simple_repeat Simple_repeat 3 24 0 3926 183 76 97 chr15 43872409 43872915 -41822839 + L1MB7 LINE L1 4745 5260 -924 1966 174 3 3 chr15 43872915 43873226 -41822528 + AluJb SINE Alu 1 311 -1 3926 183 76 97 chr15 43873226 43873369 -41822385 + L1MB7 LINE L1 5260 5404 -780 2278 103 3 0 chr15 43873369 43873671 -41822083 - AluSq SINE Alu -10 303 1 3926 183 76 97 chr15 43873671 43874507 -41821247 + L1MB7 LINE L1 5404 6175 -9 755 267 210 37 chr15 43874533 43874759 -41820995 - L2 LINE L2 -381 2933 2748 2105 144 0 6 chr15 43874759 43875071 -41820683 + AluJb SINE Alu 1 310 -2 755 267 210 37 chr15 43875071 43875391 -41820363 - L2 LINE L2 -566 2748 2292 531 259 22 22 chr15 43876109 43876248 -41819506 + MIR3 SINE MIR 19 157 -51 322 219 21 10 chr15 43876504 43876600 -41819154 + L1MB1 LINE L1 6072 6168 0 484 299 63 66 chr15 43876611 43877022 -41818732 + L1MC/D LINE L1 4993 5402 -744 392 215 123 65 chr15 43877070 43877330 -41818424 + L1MC/D LINE L1 5570 5844 -311 2465 121 40 16 chr15 43877381 43877760 -41817994 - MER61D LTR ERV1 0 501 114 2515 57 3 0 chr15 43878036 43878333 -41817421 + AluY SINE Alu 1 298 -13 2260 104 10 3 chr15 43878804 43879102 -41816652 + AluSx SINE Alu 1 300 -12 2360 97 0 0 chr15 43880394 43880693 -41815061 + AluSp SINE Alu 1 299 -14 2355 75 41 0 chr15 43880844 43881137 -41814617 - AluSq SINE Alu -8 305 1 307 108 4 0 chr15 43881223 43881283 -41814471 + MADE1 DNA Mariner 36 80 0 2458 93 0 0 chr15 43881727 43882029 -41813725 - AluSg SINE Alu -8 302 1 2472 77 0 16 chr15 43882283 43882595 -41813159 - AluY SINE Alu -4 307 1 1577 145 51 58 chr15 43882821 43883132 -41812622 - AluJo SINE Alu -3 309 1 530 242 92 0 chr15 43883366 43883486 -41812268 + MER94 DNA DNA 1 131 -3 234 355 152 23 chr15 43883575 43883792 -41811962 - L2 LINE L2 -126 3146 2902 291 337 115 26 chr15 43883930 43884200 -41811554 - L2 LINE L2 -400 2914 2621 2131 90 39 30 chr15 43884213 43884545 -41811209 + L1PA11 LINE L1 5840 6174 0 266 286 71 12 chr15 43884654 43884738 -41811016 + MIR SINE MIR 58 146 -62 2498 90 6 0 chr15 43885237 43885548 -41810206 + AluSp SINE Alu 1 313 0 284 274 186 40 chr15 43886238 43886362 -41809392 + MER5A DNA MER1_type 37 178 -11 343 248 255 13 chr15 43886573 43886730 -41809024 + MIR SINE MIR 68 262 0 1684 196 103 61 chr15 43886738 43886848 -41808906 + MLT2B1 LTR ERVL 6 110 -410 2133 155 0 0 chr15 43886848 43887151 -41808603 + AluJb SINE Alu 1 303 -9 1684 196 103 61 chr15 43887151 43887534 -41808220 + MLT2B1 LTR ERVL 110 520 0 2555 122 17 12 chr15 43887639 43888057 -41807697 - L1MA5A LINE L1 -5 6292 5873 581 153 21 31 chr15 43888058 43888191 -41807563 + MLT2D LTR ERVL 300 414 0 1741 147 3 0 chr15 43888191 43888484 -41807270 - L1MA5A LINE L1 -430 5867 5574 190 283 292 8 chr15 43888502 43888622 -41807132 - MIR3 SINE MIR -5 203 50 363 308 132 18 chr15 43888836 43889000 -41806754 + MIR SINE MIR 20 215 -47 2316 116 0 0 chr15 43889000 43889303 -41806451 + AluSx SINE Alu 1 303 -9 363 308 132 18 chr15 43889303 43889358 -41806396 + MIR SINE MIR 215 262 0 * 381 254 97 9 chr15 43889354 43889468 -41806286 - MIR SINE MIR -2 260 137 198 298 21 0 chr15 43889642 43889689 -41806065 - L2 LINE L2 -12 3301 3254 1032 198 12 0 chr15 43889739 43889911 -41805843 - FAM SINE Alu 0 175 2 2291 82 0 0 chr15 43890249 43890558 -41805196 - AluY SINE Alu 0 309 1 2353 88 7 0 chr15 43890663 43890959 -41804795 - AluSp SINE Alu -15 298 1 396 235 43 35 chr15 43890990 43891105 -41804649 - MIR3 SINE MIR -3 205 90 21 36 0 0 chr15 43891146 43891174 -41804580 + AT_rich Low_complexity Low_complexity 1 28 0 183 352 37 37 chr15 43891524 43891632 -41804122 - L2 LINE L2 -335 2978 2871 219 333 0 0 chr15 43891685 43891748 -41804006 - L2 LINE L2 -532 2782 2720 2062 118 0 17 chr15 43891766 43892078 -41803676 - AluSx SINE Alu 0 307 1 2438 65 3 0 chr15 43892253 43892545 -41803209 + AluSc SINE Alu 1 293 -16 1372 121 89 47 chr15 43893304 43893561 -41802193 - AluJo SINE Alu -21 291 24 400 92 15 0 chr15 43893949 43894014 -41801740 + Alu SINE Alu 240 305 -7 2401 91 0 0 chr15 43894027 43894325 -41801429 + AluSg SINE Alu 13 310 0 1860 152 24 3 chr15 43894332 43894628 -41801126 + AluJb SINE Alu 11 312 0 735 128 49 0 chr15 43894649 43894751 -41801003 - FLAM_C SINE Alu -35 108 2 431 246 18 9 chr15 43895887 43895997 -41799757 - MIR SINE MIR -48 214 104 2382 113 0 0 chr15 43896027 43896336 -41799418 - AluSx SINE Alu -3 309 1 2359 97 3 0 chr15 43896491 43896855 -41798899 - AluSc SINE Alu 0 365 1 226 238 0 32 chr15 43896507 43896868 -41798886 + CT-rich Low_complexity Low_complexity 3 63 0 1028 8 0 8 chr15 43897032 43897149 -41798605 - U5 snRNA snRNA 0 116 1 1264 107 12 0 chr15 43897456 43897624 -41798130 - AluSg/x SINE Alu -11 301 132 22 0 0 0 chr15 43897884 43897906 -41797848 + GC_rich Low_complexity Low_complexity 1 22 0 1130 156 5 5 chr15 43897928 43898120 -41797634 - AluJo SINE Alu -112 200 9 371 83 58 25 chr15 43898154 43898274 -41797480 + (TA)n Simple_repeat Simple_repeat 2 125 0 2462 133 58 28 chr15 43898317 43898648 -41797106 - L1MB4 LINE L1 0 6180 5829 2466 78 10 0 chr15 43898648 43898954 -41796800 - AluSq SINE Alu 0 313 5 2462 133 58 28 chr15 43898954 43899089 -41796665 - L1MB4 LINE L1 -351 5829 5700 1855 146 13 26 chr15 43899155 43899463 -41796291 - AluSx SINE Alu 0 312 9 740 136 17 0 chr15 43899463 43899581 -41796173 - AluJo/FLAM SINE Alu -182 130 11 368 253 10 10 chr15 43899604 43899703 -41796051 - AluSg/x SINE Alu -114 186 88 27 0 0 0 chr15 43899710 43899737 -41796017 + AT_rich Low_complexity Low_complexity 1 27 0 1692 234 129 24 chr15 43899758 43900458 -41795296 - L1MC3 LINE L1 -1677 6108 5336 2074 138 0 0 chr15 43900507 43900805 -41794949 + AluSx SINE Alu 1 298 -14 2235 110 10 0 chr15 43900805 43901105 -41794649 + AluSg SINE Alu 1 303 -7 1972 126 11 14 chr15 43901116 43901401 -41794353 + AluSc SINE Alu 2 285 -24 1313 148 29 69 chr15 43902054 43902331 -41793423 - AluJo SINE Alu -16 296 31 4436 133 25 47 chr15 43902331 43903755 -41791999 + pTR5 LTR ERV1 743 2438 0 1980 104 17 17 chr15 43904244 43904531 -41791223 + AluSx SINE Alu 1 287 -25 694 119 10 0 chr15 43904537 43904638 -41791116 - MER33 DNA MER1_type -217 107 6 406 326 60 37 chr15 43904652 43904867 -41790887 - L1 LINE L1 -1900 4246 4027 1092 178 14 33 chr15 43904930 43905144 -41790610 + AluJb SINE Alu 1 210 -102 1895 94 0 35 chr15 43905404 43905660 -41790094 + AluSg SINE Alu 1 247 -63 2184 117 0 0 chr15 43905695 43905999 -41789755 + AluSx SINE Alu 1 304 0 289 175 68 78 chr15 43906134 43906237 -41789517 - MIR SINE MIR -95 167 66 22 0 0 0 chr15 43906340 43906362 -41789392 + AT_rich Low_complexity Low_complexity 1 22 0 254 267 58 25 chr15 43906943 43907063 -41788691 + MER113 DNA MER1_type? 1 124 -397 28 0 0 0 chr15 43907166 43907194 -41788560 + AT_rich Low_complexity Low_complexity 1 28 0 2501 64 0 0 chr15 43907194 43907489 -41788265 - AluY SINE Alu -16 295 1 2293 101 0 7 chr15 43907548 43907854 -41787900 - AluSc SINE Alu -5 304 1 2514 65 0 10 chr15 43907864 43908172 -41787582 - AluY SINE Alu -6 305 1 2296 94 3 3 chr15 43908174 43908471 -41787283 - AluSp SINE Alu -15 298 2 234 286 10 10 chr15 43908635 43908733 -41787021 - L2 LINE L2 -338 2975 2878 585 201 124 53 chr15 43908799 43908975 -41786779 - MIR SINE MIR -37 225 30 2299 91 0 0 chr15 43908975 43909262 -41786492 - AluY SINE Alu -24 287 1 585 201 124 53 chr15 43909262 43909294 -41786460 - MIR SINE MIR -232 30 2 204 269 322 1 chr15 43909572 43909672 -41786082 + MIR SINE MIR 17 150 -58 2206 95 0 7 chr15 43909756 43910064 -41785690 + AluSx SINE Alu 1 306 0 977 120 0 0 chr15 43910084 43910217 -41785537 + AluJb SINE Alu 1 133 -179 2065 139 0 13 chr15 43910222 43910525 -41785229 + AluSx SINE Alu 1 299 -13 2057 117 3 7 chr15 43910527 43910835 -41784919 + AluSx SINE Alu 1 307 0 2264 113 3 7 chr15 43910846 43911155 -41784599 + AluSx SINE Alu 1 308 -4 1909 111 24 0 chr15 43911180 43911432 -41784322 + AluSq SINE Alu 1 258 -55 183 239 152 0 chr15 43911631 43911677 -41784077 - L2 LINE L2 -2 3270 3218 195 129 0 0 chr15 43912187 43912218 -41783536 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 372 133 0 0 chr15 43912219 43912279 -41783475 + (TCC)n Simple_repeat Simple_repeat 1 60 0 2321 96 7 0 chr15 43912279 43912572 -41783182 - AluSq SINE Alu -18 295 1 2493 175 34 59 chr15 43912750 43913266 -41782488 - L1MB8 LINE L1 0 6178 5677 2537 84 7 0 chr15 43913266 43913574 -41782180 - AluSx SINE Alu 0 312 3 2493 175 34 59 chr15 43913574 43913650 -41782104 - L1MB8 LINE L1 -501 5677 5601 218 32 32 0 chr15 43913655 43913686 -41782068 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1145 170 5 5 chr15 43913692 43913886 -41781868 - AluJo SINE Alu -2 310 117 1721 193 37 3 chr15 43913886 43914234 -41781520 - L1MB8 LINE L1 -1172 4974 4615 683 248 13 7 chr15 43914245 43914394 -41781360 - MIR SINE MIR -85 177 28 1834 164 14 0 chr15 43915311 43915598 -41780156 - AluJb SINE Alu -21 291 1 639 172 0 0 chr15 43915897 43916017 -41779737 - AluSg/x SINE Alu 0 309 190 970 220 172 35 chr15 43916046 43916496 -41779258 + MLT1G1 LTR MaLR 1 559 -36 461 73 0 0 chr15 43916496 43916564 -41779190 + FAM SINE Alu 118 185 0 2206 112 14 0 chr15 43916567 43916862 -41778892 + AluY SINE Alu 1 299 -12 2060 139 0 3 chr15 43916864 43917159 -41778595 + AluSx SINE Alu 2 295 -17 2168 107 10 7 chr15 43917495 43917793 -41777961 - AluSx SINE Alu -13 299 1 776 118 17 8 chr15 43917824 43917943 -41777811 - AluSg/x SINE Alu -16 293 174 751 44 0 0 chr15 43918043 43918133 -41777621 + AluSp/q SINE Alu 209 298 -15 591 230 13 13 chr15 43918133 43918285 -41777469 - MER3 DNA MER1_type -57 152 1 335 159 0 0 chr15 43918590 43918659 -41777095 - FLAM_A SINE Alu 0 133 65 475 335 36 44 chr15 43918677 43918928 -41776826 + MIR SINE MIR 4 252 -10 199 186 70 0 chr15 43920866 43920909 -41774845 - L2 LINE L2 -3 3310 3265 2099 160 0 3 chr15 43921002 43921284 -41774470 + AluJb SINE Alu 1 283 -29 381 117 0 0 chr15 43921284 43921344 -41774410 + (CA)n Simple_repeat Simple_repeat 1 60 0 2099 160 0 3 chr15 43921344 43921373 -41774381 + AluJb SINE Alu 283 311 -1 391 257 146 35 chr15 43921511 43921655 -41774099 - MIR SINE MIR -87 175 16 340 304 25 57 chr15 43922178 43922195 -41773559 + MIR3 SINE MIR 39 55 -153 2467 68 0 7 chr15 43922195 43922490 -41773264 - AluSx SINE Alu -19 293 1 340 304 25 57 chr15 43922490 43922630 -41773124 + MIR3 SINE MIR 55 191 -17 398 279 123 39 chr15 43923025 43923179 -41772575 + MIR3 SINE MIR 32 198 -10 4095 98 4 18 chr15 43923208 43923380 -41772374 + MER41A LTR ERV1 1 174 -380 2326 98 0 16 chr15 43923380 43923719 -41772035 + AluSp SINE Alu 1 313 0 4095 98 4 18 chr15 43923719 43924108 -41771646 + MER41A LTR ERV1 174 554 0 5019 140 77 10 chr15 43924194 43925773 -41769981 + MER41A-int LTR ERV1 3 1775 -4171 691 75 0 0 chr15 43925757 43925851 -41769903 + MER41A-int LTR ERV1 1950 2043 -4220 * 2002 118 3 67 chr15 43925851 43926181 -41769573 - AluSx SINE Alu -3 309 1 2391 103 0 0 chr15 43926192 43926493 -41769261 - AluSx SINE Alu -11 301 1 10895 89 32 5 chr15 43926496 43926986 -41768768 + MER41A-int LTR ERV1 2716 3191 -2755 2523 74 7 0 chr15 43926986 43927284 -41768470 + AluY SINE Alu 1 300 -11 10895 89 32 5 chr15 43927284 43928932 -41766822 + MER41A-int LTR ERV1 3191 5703 -243 380 70 0 18 chr15 43928933 43928990 -41766764 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 2272 86 3 0 chr15 43928991 43929281 -41766473 - AluY SINE Alu -20 291 1 3114 91 37 15 chr15 43929282 43929624 -41766130 + MER41A LTR ERV1 84 440 -114 2230 132 0 0 chr15 43929624 43929934 -41765820 - AluSq SINE Alu 0 313 4 3114 91 37 15 chr15 43929934 43930052 -41765702 + MER41A LTR ERV1 440 554 0 348 316 35 58 chr15 43930238 43930412 -41765342 + L2 LINE L2 3096 3265 -7 226 272 48 68 chr15 43930468 43930571 -41765183 + MIR3 SINE MIR 58 158 -50 436 313 7 20 chr15 43930581 43930731 -41765023 - MER5B DNA MER1_type -3 175 28 21 0 0 0 chr15 43930903 43930924 -41764830 + GC_rich Low_complexity Low_complexity 1 21 0 34 93 0 0 chr15 43931204 43931301 -41764453 + GC_rich Low_complexity Low_complexity 1 97 0 2112 119 0 7 chr15 43932580 43932883 -41762871 - AluSx SINE Alu -11 301 1 1818 163 3 3 chr15 43933836 43934131 -41761623 - AluJb SINE Alu -11 301 7 755 159 83 0 chr15 43934393 43934525 -41761229 - FRAM SINE Alu -6 170 28 1870 136 31 0 chr15 43934558 43934844 -41760910 - AluSx SINE Alu -17 295 1 325 133 24 0 chr15 43936416 43936479 -41759275 - Alu SINE Alu -254 48 1 2213 112 0 3 chr15 43936919 43937232 -41758522 + AluSx SINE Alu 1 312 0 340 294 10 20 chr15 43937475 43937577 -41758177 - L3 LINE CR1 -613 964 864 197 302 81 0 chr15 43937658 43937744 -41758010 + MIR SINE MIR 77 169 -93 252 234 19 136 chr15 43937853 43938007 -41757747 + MIR SINE MIR 14 149 -113 1905 151 3 3 chr15 43938009 43938308 -41757446 + AluSp SINE Alu 1 299 -14 198 0 0 0 chr15 43939672 43939694 -41756060 + (T)n Simple_repeat Simple_repeat 1 22 0 597 239 116 0 chr15 43941436 43941591 -41754163 - MIR SINE MIR -72 190 18 286 234 9 5 chr15 43942252 43942373 -41753381 - MER91A DNA MER1_type -21 175 1 472 235 22 37 chr15 43943088 43943224 -41752530 - MIR SINE MIR -57 151 18 229 302 0 0 chr15 43947783 43947846 -41747908 - MIR SINE MIR -65 143 81 1386 153 0 14 chr15 43950275 43950446 -41745308 - AluJo SINE Alu -8 304 135 2204 123 0 0 chr15 43950446 43950756 -41744998 - AluSg SINE Alu 0 310 1 1386 153 0 14 chr15 43950756 43950807 -41744947 - AluJo SINE Alu -177 135 85 216 390 19 13 chr15 43951937 43952091 -41743663 - L3 LINE CR1 -122 1455 1301 2207 116 7 0 chr15 43952094 43952404 -41743350 - AluSx SINE Alu 0 312 1 620 144 117 0 chr15 43952411 43952522 -41743232 + MER33 DNA MER1_type 9 132 -192 1700 126 92 0 chr15 43952537 43952830 -41742924 + L1M3 LINE L1 5404 5723 -460 1616 78 0 30 chr15 43952930 43953160 -41742594 - AluSg1 SINE Alu -86 223 1 434 172 83 105 chr15 43953216 43953378 -41742376 + MLT1H LTR MaLR 10 135 -274 246 297 0 0 chr15 43953495 43953569 -41742185 + MLT1H LTR MaLR 303 376 -179 1659 189 7 0 chr15 43953612 43953909 -41741845 - AluJo SINE Alu -9 303 5 2050 119 0 0 chr15 43953925 43954210 -41741544 - AluSx SINE Alu -13 299 15 368 40 20 0 chr15 43954348 43954398 -41741356 + (TC)n Simple_repeat Simple_repeat 2 52 0 185 0 0 39 chr15 43954419 43954445 -41741309 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 2123 119 0 3 chr15 43954456 43954766 -41740988 - AluSg SINE Alu -1 309 1 215 276 146 8 chr15 43955527 43955650 -41740104 - MIR SINE MIR -6 256 117 582 238 73 44 chr15 43955815 43956021 -41739733 - MIR SINE MIR -8 254 43 367 288 54 0 chr15 43956029 43956140 -41739614 + MER5A DNA MER1_type 73 189 0 583 248 95 50 chr15 43956470 43956530 -41739224 + MER46C DNA MER2_type 1 57 -281 2133 111 0 22 chr15 43956530 43956845 -41738909 - AluSx SINE Alu -4 308 1 583 248 95 50 chr15 43956845 43957026 -41738728 + MER46C DNA MER2_type 57 253 -85 375 221 23 0 chr15 43957573 43957659 -41738095 + MER46C DNA MER2_type 251 338 0 2183 110 0 3 chr15 43958268 43958569 -41737185 + AluSc SINE Alu 1 300 -9 571 213 57 0 chr15 43958660 43958782 -41736972 + FLAM_A SINE Alu 1 129 -4 1608 160 10 51 chr15 43958868 43959181 -41736573 + AluJb SINE Alu 1 300 -12 252 211 19 0 chr15 43959281 43959333 -41736421 - L2 LINE L2 -3 3269 3217 1977 113 7 3 chr15 43959424 43959716 -41736038 + AluSx SINE Alu 2 294 -18 565 271 72 6 chr15 43959947 43960128 -41735626 + MIR SINE MIR 63 255 -7 210 308 29 105 chr15 43960152 43960324 -41735430 - L2 LINE L2 -414 2900 2742 741 138 71 112 chr15 43960887 43960962 -41734792 - MER53 DNA DNA 0 189 112 1665 157 27 20 chr15 43960962 43961256 -41734498 - AluJb SINE Alu -16 296 1 741 138 71 112 chr15 43961256 43961304 -41734450 - MER53 DNA DNA -77 112 64 1907 128 3 3 chr15 43961304 43961586 -41734168 + AluSq SINE Alu 17 298 -15 741 138 71 112 chr15 43961586 43961657 -41734097 - MER53 DNA DNA -125 64 2 661 258 66 14 chr15 43962051 43962288 -41733466 - MIR SINE MIR 0 262 2 235 313 47 99 chr15 43962709 43962942 -41732812 - MER102b DNA MER1_type -13 328 108 320 266 46 18 chr15 43963784 43963893 -41731861 + MIR SINE MIR 140 251 -11 570 211 8 55 chr15 43964398 43964526 -41731228 + MER5B DNA MER1_type 50 171 -7 317 80 20 20 chr15 43964574 43964624 -41731130 + FLAM SINE Alu 62 111 -22 408 233 12 64 chr15 43964695 43964743 -41731011 + L1ME LINE L1 5573 5622 -499 1972 149 0 0 chr15 43964743 43965045 -41730709 + AluSx SINE Alu 1 302 -10 408 233 12 64 chr15 43965045 43965168 -41730586 + L1ME LINE L1 5622 5735 -386 384 277 248 0 chr15 43965487 43965628 -41730126 - MER5A DNA MER1_type 0 189 14 2234 90 0 3 chr15 43965996 43966296 -41729458 + AluSq SINE Alu 1 299 -14 1728 143 21 11 chr15 43966611 43966897 -41728857 - AluJb SINE Alu -23 289 1 24 0 0 0 chr15 43967560 43967584 -41728170 + AT_rich Low_complexity Low_complexity 1 24 0 796 157 0 0 chr15 43967744 43967859 -41727895 + FLAM_C SINE Alu 2 116 -27 190 218 0 91 chr15 43968364 43968419 -41727335 + L2 LINE L2 3263 3312 -1 764 308 77 13 chr15 43968730 43968924 -41726830 - L1M4 LINE L1 -2264 3882 3702 1893 86 79 21 chr15 43968924 43969214 -41726540 - AluSg SINE Alu -3 307 1 764 308 77 13 chr15 43969214 43969396 -41726358 - L1M4 LINE L1 -2444 3702 3482 1421 148 129 4 chr15 43969398 43969662 -41726092 - AluJo SINE Alu -4 308 12 2267 84 7 3 chr15 43969729 43970027 -41725727 - AluSp SINE Alu -14 299 1 314 263 0 74 chr15 43970178 43970273 -41725481 - L1M4 LINE L1 -2658 3488 3401 218 281 0 12 chr15 43971569 43971651 -41724103 + (CCCCG)n Simple_repeat Simple_repeat 2 82 0 338 297 30 0 chr15 43971927 43972028 -41723726 - MIR SINE MIR -65 143 40 192 303 28 64 chr15 43972637 43972746 -41723008 + MIR SINE MIR 19 123 -85 225 265 82 0 chr15 43972907 43973005 -41722749 - L1MC/D LINE L1 -2330 5478 5373 374 158 0 0 chr15 43973103 43973160 -41722594 - AluS SINE Alu -242 57 1 2257 110 0 0 chr15 43973432 43973741 -41722013 - AluSg SINE Alu -1 309 1 33 0 0 0 chr15 43973782 43973815 -41721939 + AT_rich Low_complexity Low_complexity 1 33 0 1854 161 26 3 chr15 43973845 43974150 -41721604 - AluJb SINE Alu 0 312 1 33 25 0 0 chr15 43974200 43974240 -41721514 + AT_rich Low_complexity Low_complexity 1 40 0 2568 11 0 0 chr15 43974253 43974585 -41721169 - AluYb8 SINE Alu 0 332 1 2321 44 40 0 chr15 43974892 43975189 -41720565 - AluYa5 SINE Alu -2 309 1 1619 106 63 73 chr15 43975200 43975383 -41720371 - AluSx SINE Alu -1 311 131 1859 85 44 0 chr15 43975383 43975631 -41720123 - AluSq SINE Alu -54 259 1 1619 106 63 73 chr15 43975631 43975749 -41720005 - AluSx SINE Alu -181 131 13 390 331 80 0 chr15 43975862 43976013 -41719741 + L2 LINE L2 3107 3269 -3 594 200 17 9 chr15 43976079 43976194 -41719560 - FLAM_C SINE Alu -12 131 16 312 207 0 0 chr15 43976435 43976493 -41719261 + MLT1G LTR MaLR 2 59 -508 1912 141 31 0 chr15 43976493 43976783 -41718971 + AluSx SINE Alu 1 299 -13 673 249 109 66 chr15 43976787 43977201 -41718553 + MLT1G LTR MaLR 113 551 -4 268 189 74 32 chr15 43977441 43977536 -41718218 + L1ME4a LINE L1 6020 6118 -3 921 132 0 20 chr15 43977574 43977684 -41718070 + L1MB3 LINE L1 6033 6141 -42 1742 182 0 3 chr15 43977684 43977992 -41717762 + AluJb SINE Alu 1 307 -5 921 132 0 20 chr15 43977992 43978033 -41717721 + L1MB3 LINE L1 6141 6181 -2 682 243 69 49 chr15 43978403 43978504 -41717250 + HAL1 LINE L1 1981 2078 -429 1872 143 0 3 chr15 43978504 43978791 -41716963 + AluSx SINE Alu 9 294 -18 682 243 69 49 chr15 43978791 43979035 -41716719 + HAL1 LINE L1 2078 2333 -174 296 274 128 0 chr15 43979809 43979911 -41715843 + L2 LINE L2 2945 3059 -213 307 264 66 11 chr15 43979951 43980042 -41715712 - MIR SINE MIR -27 235 140 281 187 33 140 chr15 43980098 43980248 -41715506 + MIR SINE MIR 70 203 -59 2156 114 0 13 chr15 43980401 43980707 -41715047 + AluSx SINE Alu 1 302 -10 207 290 203 22 chr15 43981054 43981192 -41714562 - MIR SINE MIR -80 182 20 441 0 0 0 chr15 43981348 43981397 -41714357 + (TG)n Simple_repeat Simple_repeat 2 50 0 1936 145 0 7 chr15 43981408 43981567 -41714187 - AluJo SINE Alu -17 295 137 2345 71 0 0 chr15 43981567 43981862 -41713892 - AluY SINE Alu -16 295 1 1936 145 0 7 chr15 43981862 43981999 -41713755 - AluJo SINE Alu -175 137 1 262 274 21 32 chr15 43982096 43982191 -41713563 + MIR SINE MIR 31 124 -84 * 402 235 118 22 chr15 43982190 43982326 -41713428 + MIR3 SINE MIR 35 183 -25 300 364 66 7 chr15 43982519 43982670 -41713084 + MIR3 SINE MIR 38 197 -11 2051 112 0 0 chr15 43982700 43982968 -41712786 - AluSx SINE Alu -44 268 1 444 286 30 54 chr15 43982973 43983141 -41712613 - MER5B DNA MER1_type -8 170 7 1050 90 8 0 chr15 43983504 43983638 -41712116 + AluSq/x SINE Alu 1 135 -178 1780 178 3 3 chr15 43983638 43983941 -41711813 + AluJb SINE Alu 1 303 -9 302 239 98 0 chr15 43983999 43984091 -41711663 + L2 LINE L2 3208 3308 -5 1667 159 64 0 chr15 43984980 43985244 -41710510 - AluJo SINE Alu -31 281 1 1846 174 3 0 chr15 43985268 43985555 -41710199 - AluJb SINE Alu -22 290 3 2040 138 3 7 chr15 43985809 43986105 -41709649 - AluSx SINE Alu -17 295 1 229 315 14 0 chr15 43986188 43986261 -41709493 - Charlie4 DNA MER1_type -4 1957 1884 2006 125 43 13 chr15 43986437 43986740 -41709014 + AluSx SINE Alu 1 312 0 2441 68 7 23 chr15 43986809 43987119 -41708635 + AluY SINE Alu 1 305 -6 25 31 0 0 chr15 43988208 43988240 -41707514 + AT_rich Low_complexity Low_complexity 1 32 0 314 343 6 34 chr15 43988268 43988443 -41707311 + MIR3 SINE MIR 37 206 -2 229 305 64 91 chr15 43988854 43988952 -41706802 + MER5A DNA MER1_type 7 99 -90 2261 121 0 7 chr15 43988952 43989258 -41706496 - AluSx SINE Alu -8 304 1 229 305 64 91 chr15 43989258 43989346 -41706408 + MER5A DNA MER1_type 99 188 -1 270 0 0 0 chr15 43989921 43989951 -41705803 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 189 0 0 0 chr15 43991657 43991678 -41704076 + (T)n Simple_repeat Simple_repeat 1 21 0 3630 202 100 9 chr15 43992271 43993143 -41702611 + Charlie1a DNA MER1_type 8 958 -497 853 223 13 77 chr15 43993143 43993376 -41702378 + AluJo SINE Alu 1 218 -94 24 0 0 0 chr15 43993408 43993432 -41702322 + AT_rich Low_complexity Low_complexity 1 24 0 2405 84 0 0 chr15 43993432 43993728 -41702026 + AluY SINE Alu 1 296 -15 344 191 75 64 chr15 43993729 43993823 -41701931 - L1MC4 LINE L1 -1339 6703 6609 459 107 50 14 chr15 43993823 43993963 -41701791 + (TA)n Simple_repeat Simple_repeat 2 146 0 1980 132 4 7 chr15 43993968 43994249 -41701505 + AluSx SINE Alu 3 282 -30 1584 165 3 84 chr15 43994367 43994700 -41701054 + AluJb SINE Alu 6 311 -1 248 294 0 112 chr15 43995391 43995534 -41700220 - MIR3 SINE MIR -6 202 76 2441 68 0 16 chr15 43996059 43996368 -41699386 - AluSx SINE Alu -8 304 1 589 248 77 1 chr15 43997422 43997597 -41698157 + MIR SINE MIR 37 222 -40 1907 168 20 0 chr15 43997814 43998118 -41697636 + AluJb SINE Alu 1 310 -2 416 234 56 19 chr15 43998262 43998369 -41697385 + MIR3 SINE MIR 77 187 -21 1786 138 38 21 chr15 43998999 43999136 -41696618 + AluJo SINE Alu 1 134 -178 2334 99 3 0 chr15 43999136 43999439 -41696315 + AluSq SINE Alu 1 304 -9 1786 138 38 21 chr15 43999439 43999592 -41696162 + AluJo SINE Alu 134 296 -16 2371 105 0 10 chr15 44000286 44000600 -41695154 + AluSx SINE Alu 1 311 -1 1101 71 0 0 chr15 44000600 44000776 -41694978 + L1PA3 LINE L1 5993 6168 0 282 29 0 0 chr15 44001379 44001414 -41694340 + (CA)n Simple_repeat Simple_repeat 1 35 0 202 220 20 0 chr15 44002074 44002124 -41693630 + GA-rich Low_complexity Low_complexity 1 51 0 307 243 14 0 chr15 44002504 44002578 -41693176 - MIR3 SINE MIR -52 156 82 2019 121 36 0 chr15 44003449 44003730 -41692024 + AluSx SINE Alu 1 291 -21 849 120 0 0 chr15 44003730 44003863 -41691891 + (TA)n Simple_repeat Simple_repeat 2 134 0 24 0 0 0 chr15 44003965 44003989 -41691765 + AT_rich Low_complexity Low_complexity 1 24 0 811 139 0 23 chr15 44004002 44004131 -41691623 - AluJo SINE Alu -178 134 9 470 237 0 0 chr15 44004135 44004232 -41691522 - MIR SINE MIR -117 145 49 672 282 24 40 chr15 44004398 44004650 -41691104 - MIR SINE MIR -7 255 8 244 287 287 0 chr15 44004711 44004847 -41690907 + MER5A DNA MER1_type 9 183 -6 268 315 181 0 chr15 44005377 44005526 -41690228 - MIR SINE MIR -15 247 72 613 265 84 42 chr15 44006851 44007066 -41688688 + MIR SINE MIR 34 257 -5 2165 128 0 3 chr15 44007069 44007366 -41688388 + AluSx SINE Alu 3 298 -14 532 263 38 25 chr15 44008805 44008965 -41686789 - MIR SINE MIR -67 195 34 237 305 8 42 chr15 44009028 44009146 -41686608 + MIR SINE MIR 83 196 -66 24 67 0 0 chr15 44009801 44009846 -41685908 + GC_rich Low_complexity Low_complexity 1 45 0 213 94 0 0 chr15 44010915 44010947 -41684807 + (CAG)n Simple_repeat Simple_repeat 3 34 0 22 0 0 0 chr15 44010957 44010979 -41684775 + GC_rich Low_complexity Low_complexity 1 22 0 223 197 0 56 chr15 44011071 44011142 -41684612 + (CTGGGG)n Simple_repeat Simple_repeat 4 70 0 246 293 0 0 chr15 44011261 44011336 -41684418 + C-rich Low_complexity Low_complexity 1 75 0 240 143 18 3 chr15 44012256 44012479 -41683275 + AluJb SINE Alu 1 302 0 2316 94 0 7 chr15 44012594 44012892 -41682862 + AluSx SINE Alu 10 305 -7 2307 87 0 0 chr15 44013978 44014253 -41681501 + AluSx SINE Alu 1 275 -37 279 0 0 0 chr15 44014262 44014293 -41681461 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1581 189 10 21 chr15 44014313 44014604 -41681150 + AluJo SINE Alu 9 296 -16 201 74 0 0 chr15 44015622 44015649 -41680105 + (A)n Simple_repeat Simple_repeat 1 27 0 713 196 10 93 chr15 44020141 44020247 -41675507 + MER45A DNA AcHobo 1 114 -1467 1951 151 0 30 chr15 44020247 44020551 -41675203 - AluJb SINE Alu -17 295 1 2522 68 0 16 chr15 44020557 44020868 -41674886 - AluY SINE Alu -5 306 1 713 196 10 93 chr15 44020868 44020948 -41674806 + MER45A DNA AcHobo 119 178 0 1010 120 0 7 chr15 44021043 44021179 -41674575 + AluSq/x SINE Alu 1 136 -171 2457 87 7 0 chr15 44021179 44021477 -41674277 + AluSq SINE Alu 1 300 -13 207 283 57 0 chr15 44023660 44023713 -41672041 - MIR SINE MIR -90 172 117 857 217 78 18 chr15 44023807 44024024 -41671730 + MIR SINE MIR 27 256 -6 385 254 91 9 chr15 44024034 44024144 -41671610 + L2 LINE L2 3195 3313 0 181 286 0 79 chr15 44024149 44024166 -41671588 - MIR3 SINE MIR -141 67 50 2244 122 10 0 chr15 44024166 44024462 -41671292 + AluSx SINE Alu 1 299 -13 181 286 0 79 chr15 44024462 44024507 -41671247 - MIR3 SINE MIR -158 50 10 367 236 65 0 chr15 44024576 44024708 -41671046 + MIR3 SINE MIR 3 148 -79 518 281 36 24 chr15 44026022 44026189 -41669565 - MIR SINE MIR -24 238 70 207 244 0 61 chr15 44027125 44027207 -41668547 + C-rich Low_complexity Low_complexity 3 79 0 729 200 0 0 chr15 44027211 44027341 -41668413 - FRAM SINE Alu -7 169 40 203 264 161 11 chr15 44027341 44027428 -41668326 - MIR SINE MIR -66 142 43 217 264 33 20 chr15 44027785 44027886 -41667868 - MIR SINE MIR -71 137 52 396 186 113 57 chr15 44028040 44028164 -41667590 + MIR SINE MIR 18 148 -60 258 257 108 68 chr15 44030349 44030497 -41665257 + MIR SINE MIR 109 262 0 247 217 98 0 chr15 44030663 44030755 -41664999 + L1P4 LINE L1 5332 5432 -734 919 128 0 0 chr15 44030763 44030896 -41664858 + FLAM_C SINE Alu 1 133 0 914 299 108 9 chr15 44031004 44031465 -41664289 + L1ME4a LINE L1 5615 6121 0 2399 112 0 0 chr15 44031467 44031779 -41663975 + AluSx SINE Alu 1 312 0 2140 74 3 44 chr15 44031812 44032141 -41663613 + AluY SINE Alu 1 317 0 228 197 30 45 chr15 44032317 44032383 -41663371 - MER5A DNA MER1_type -87 102 38 1615 157 92 11 chr15 44032406 44032687 -41663067 + AluJo SINE Alu 3 306 -6 215 306 12 35 chr15 44032702 44032787 -41662967 + MER5A DNA MER1_type 107 189 0 336 225 25 67 chr15 44033242 44033362 -41662392 + MIR SINE MIR 108 222 -40 240 304 98 11 chr15 44033473 44033565 -41662189 + L2 LINE L2 3137 3236 -36 190 328 17 0 chr15 44034198 44034256 -41661498 - MIR SINE MIR -49 213 155 416 304 22 7 chr15 44034477 44034612 -41661142 + MIR3 SINE MIR 23 159 -49 192 188 0 0 chr15 44034896 44034928 -41660826 - L2 LINE L2 -19 3253 3222 253 355 2 4 chr15 44034985 44035079 -41660675 - MIR SINE MIR -111 97 5 205 275 50 93 chr15 44035332 44035514 -41660240 + MIR3 SINE MIR 14 187 -21 1071 261 107 37 chr15 44035761 44035802 -41659952 + L1MC4a LINE L1 5401 5438 -2370 2440 67 7 0 chr15 44035802 44036100 -41659654 + AluSp SINE Alu 1 300 -13 1071 261 107 37 chr15 44036100 44036487 -41659267 + L1MC4a LINE L1 5438 5859 -1949 322 353 128 0 chr15 44036710 44036866 -41658888 - MIR SINE MIR -55 207 32 312 102 0 0 chr15 44037879 44037928 -41657826 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 1717 142 0 4 chr15 44038021 44038274 -41657480 + AluJb SINE Alu 38 289 -23 345 331 78 21 chr15 44038315 44038557 -41657197 + L1ME4a LINE L1 5848 6103 -18 269 219 124 67 chr15 44038678 44038783 -41656971 + MIR3 SINE MIR 83 193 -15 771 201 48 19 chr15 44039401 44039610 -41656144 - MER113 DNA MER1_type? -306 215 1 22 0 0 0 chr15 44040191 44040213 -41655541 + AT_rich Low_complexity Low_complexity 1 22 0 289 175 68 78 chr15 44040316 44040419 -41655335 + MIR SINE MIR 66 167 -95 2183 117 0 0 chr15 44040554 44040858 -41654896 - AluSx SINE Alu 0 304 1 1983 74 0 39 chr15 44040893 44041150 -41654604 - AluSg SINE Alu -63 247 1 940 119 15 0 chr15 44041150 44041284 -41654470 - AluJb SINE Alu -176 136 1 352 252 36 9 chr15 44041343 44041454 -41654300 + MIR SINE MIR 137 250 -12 300 227 27 0 chr15 44041729 44041804 -41653950 + MER103 DNA DNA 8 84 -82 1654 168 37 20 chr15 44042055 44042352 -41653402 - AluJb SINE Alu -10 302 1 324 286 41 20 chr15 44043045 44043143 -41652611 + MIR3 SINE MIR 62 161 -47 296 245 39 24 chr15 44044848 44044949 -41650805 + MIR SINE MIR 26 121 -87 2150 155 87 18 chr15 44044973 44045411 -41650343 + L1MB8 LINE L1 5699 6166 -12 1236 162 0 10 chr15 44045419 44045617 -41650137 + AluJo SINE Alu 84 279 -33 2546 87 0 0 chr15 44045633 44045942 -41649812 + AluSg SINE Alu 1 309 -1 203 176 0 0 chr15 44045942 44045976 -41649778 + L2 LINE L2 3218 3251 -21 1237 176 141 27 chr15 44046047 44046303 -41649451 + AluJo SINE Alu 1 285 -17 189 0 0 0 chr15 44046325 44046346 -41649408 + (TC)n Simple_repeat Simple_repeat 2 22 0 225 0 0 0 chr15 44046348 44046373 -41649381 + (CA)n Simple_repeat Simple_repeat 2 26 0 288 0 0 0 chr15 44046430 44046462 -41649292 + (TG)n Simple_repeat Simple_repeat 1 32 0 249 211 184 13 chr15 44046734 44046810 -41648944 - MIR3 SINE MIR -105 103 15 450 216 194 7 chr15 44047219 44047358 -41648396 + MIR3 SINE MIR 35 199 -9 229 315 0 0 chr15 44047749 44047803 -41647951 - L2 LINE L2 -86 3186 3133 314 264 165 9 chr15 44047860 44048035 -41647719 + MIR SINE MIR 42 250 -12 1707 155 8 0 chr15 44048040 44048298 -41647456 - AluSx SINE Alu -7 305 46 296 122 0 0 chr15 44048351 44048392 -41647362 - AluSx SINE Alu -257 42 2 238 158 0 0 chr15 44049013 44049051 -41646703 - MIR SINE MIR -62 146 109 332 302 1 47 chr15 44049338 44049445 -41646309 + MIR SINE MIR 44 148 -60 2626 43 20 0 chr15 44049538 44049840 -41645914 - AluY SINE Alu -3 308 1 2159 104 3 27 chr15 44051002 44051299 -41644455 - AluSx SINE Alu -22 290 1 442 229 136 17 chr15 44051325 44051443 -41644311 + L2 LINE L2 3182 3313 0 274 271 127 17 chr15 44051491 44051609 -41644145 + MIR SINE MIR 108 238 -24 277 354 76 0 chr15 44051663 44051807 -41643947 - L3 LINE CR1 -111 1466 1312 328 220 175 96 chr15 44052326 44052445 -41643309 + MIR3 SINE MIR 17 156 -52 1598 167 13 58 chr15 44052445 44052757 -41642997 - AluJo SINE Alu -1 311 14 328 220 175 96 chr15 44052757 44052814 -41642940 + MIR3 SINE MIR 156 207 -1 2404 106 0 0 chr15 44053338 44053650 -41642104 - AluSx SINE Alu 0 312 1 682 285 128 52 chr15 44053659 44054426 -41641328 + L2 LINE L2 2470 3272 0 378 0 0 0 chr15 44055923 44055965 -41639789 + (CA)n Simple_repeat Simple_repeat 2 43 0 25 31 0 0 chr15 44056236 44056268 -41639486 + GC_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr15 44056284 44056305 -41639449 + (CCG)n Simple_repeat Simple_repeat 2 22 0 222 231 0 26 chr15 44056360 44056438 -41639316 + G-rich Low_complexity Low_complexity 4 79 0 427 298 35 16 chr15 44056998 44057154 -41638600 - MIR3 SINE MIR -75 133 3 255 324 0 42 chr15 44057292 44057363 -41638391 + L3b LINE CR1 1513 1580 -3 360 169 0 14 chr15 44057488 44057559 -41638195 + L2 LINE L2 1931 2000 -1314 1973 239 158 43 chr15 44057559 44057814 -41637940 + L2 LINE L2 2167 2391 -922 932 108 0 8 chr15 44057814 44057944 -41637810 + FLAM_C SINE Alu 1 129 -4 1973 239 158 43 chr15 44057944 44058504 -41637250 + L2 LINE L2 2391 2885 -428 1866 119 94 3 chr15 44058504 44058790 -41636964 - AluSx SINE Alu 0 312 1 1973 239 158 43 chr15 44058790 44058802 -41636952 + L2 LINE L2 2885 2894 -419 2413 97 0 3 chr15 44058802 44059112 -41636642 - AluSx SINE Alu -3 309 1 1973 239 158 43 chr15 44059112 44059276 -41636478 + L2 LINE L2 2894 3285 -28 261 280 163 50 chr15 44059632 44059914 -41635840 - L2 LINE L2 -14 3258 2945 461 248 38 30 chr15 44060135 44060268 -41635486 + MIR3 SINE MIR 36 169 -39 2361 96 0 16 chr15 44060340 44060652 -41635102 + AluSq SINE Alu 1 307 -6 2123 125 0 3 chr15 44060873 44061169 -41634585 + AluJb SINE Alu 1 295 -17 48 18 0 0 chr15 44061514 44061569 -41634185 + AT_rich Low_complexity Low_complexity 1 55 0 1908 163 90 38 chr15 44061593 44061684 -41634070 + Charlie1 DNA MER1_type 2257 2342 -419 2258 112 3 0 chr15 44061684 44061978 -41633776 - AluSx SINE Alu -17 295 1 1908 163 90 38 chr15 44061978 44062224 -41633530 + Charlie1 DNA MER1_type 2342 2629 -132 2360 115 0 0 chr15 44062224 44062536 -41633218 - AluSp SINE Alu -1 312 1 1908 163 90 38 chr15 44062536 44062677 -41633077 + Charlie1 DNA MER1_type 2629 2761 0 23 0 0 0 chr15 44063581 44063604 -41632150 + AT_rich Low_complexity Low_complexity 1 23 0 1957 136 3 23 chr15 44063911 44064220 -41631534 + AluJb SINE Alu 1 303 -9 2122 113 10 14 chr15 44064962 44065273 -41630481 + AluSx SINE Alu 1 312 0 619 186 42 8 chr15 44065435 44065553 -41630201 - L2 LINE L2 0 3272 3151 216 216 0 0 chr15 44065701 44065752 -41630002 + (CATA)n Simple_repeat Simple_repeat 2 52 0 676 104 5 2 chr15 44065761 44066021 -41629733 + AluSx SINE Alu 1 310 0 2044 108 3 90 chr15 44066100 44066432 -41629322 + AluSx SINE Alu 1 303 -9 2325 104 10 3 chr15 44066792 44067099 -41628655 - AluSx SINE Alu -3 309 1 295 343 98 39 chr15 44067165 44067369 -41628385 - L3b LINE CR1 -120 1463 1248 1981 157 3 6 chr15 44067395 44067708 -41628046 - AluJb SINE Alu 0 312 1 195 42 0 0 chr15 44067897 44067921 -41627833 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 227 270 0 32 chr15 44068127 44068190 -41627564 + L3b LINE CR1 1263 1323 -260 416 324 103 32 chr15 44069076 44069261 -41626493 + L2 LINE L2 2804 3001 -312 2157 116 3 7 chr15 44069349 44069650 -41626104 + AluSx SINE Alu 1 300 -12 1222 129 65 5 chr15 44069657 44069843 -41625911 - AluJo SINE Alu -17 295 99 486 260 75 7 chr15 44069844 44069990 -41625764 + L2 LINE L2 3158 3313 0 959 191 6 0 chr15 44070071 44070233 -41625521 - FRAM SINE Alu -3 163 1 183 265 41 0 chr15 44070491 44070540 -41625214 + L2 LINE L2 3258 3308 -5 2181 132 0 0 chr15 44070541 44070837 -41624917 - AluSx SINE Alu -16 296 1 839 117 0 0 chr15 44071336 44071447 -41624307 - AluJo SINE Alu -201 111 1 1839 163 34 3 chr15 44071450 44071744 -41624010 - AluJo SINE Alu -9 303 1 2348 108 0 0 chr15 44071950 44072245 -41623509 + AluSx SINE Alu 1 295 -17 959 95 65 12 chr15 44072269 44072437 -41623317 - L1MB4 LINE L1 0 6180 6004 1057 411 10 27 chr15 44072440 44072737 -41623017 + AluSx SINE Alu 4 295 -7 4113 138 26 41 chr15 44072761 44072932 -41622822 - L1MB4 LINE L1 0 6180 6008 2044 135 7 3 chr15 44072932 44073235 -41622519 + AluSx SINE Alu 4 307 -5 4113 138 26 41 chr15 44073235 44073876 -41621878 - L1MB4 LINE L1 -172 6008 5380 1785 146 43 7 chr15 44073924 44074204 -41621550 - AluJo SINE Alu -22 290 1 2108 121 10 3 chr15 44074378 44074668 -41621086 - AluSg SINE Alu -18 292 1 2205 127 0 0 chr15 44074738 44075038 -41620716 - AluSx SINE Alu -12 300 1 2167 102 3 3 chr15 44075365 44075648 -41620106 - AluSc SINE Alu -26 283 1 2297 107 0 10 chr15 44076026 44076326 -41619428 + AluSq SINE Alu 1 297 -16 200 238 0 0 chr15 44076482 44076524 -41619230 + (TA)n Simple_repeat Simple_repeat 2 43 0 2523 73 0 10 chr15 44076851 44077165 -41618589 + AluY SINE Alu 1 311 0 1883 158 0 26 chr15 44077169 44077473 -41618281 + AluJb SINE Alu 1 296 -16 2383 110 3 0 chr15 44077926 44078236 -41617518 - AluSq SINE Alu -2 311 1 2185 93 41 3 chr15 44078335 44078626 -41617128 - AluY SINE Alu -9 302 1 2006 163 3 0 chr15 44078901 44079208 -41616546 - AluSx SINE Alu -4 308 1 1391 229 20 20 chr15 44080143 44080448 -41615306 - AluJo SINE Alu -7 305 1 2008 164 3 3 chr15 44080983 44081281 -41614473 + AluJo SINE Alu 1 298 -14 1023 133 10 79 chr15 44082013 44082216 -41613538 + THE1B LTR MaLR 176 364 0 1066 191 22 0 chr15 44082219 44082397 -41613357 + AluJo SINE Alu 109 290 -22 1610 128 67 83 chr15 44082450 44082638 -41613116 - AluJo SINE Alu 0 333 144 2191 142 0 0 chr15 44082638 44082947 -41612807 - AluSq SINE Alu -4 309 1 1610 128 67 83 chr15 44082947 44082984 -41612770 - AluJo SINE Alu -189 144 108 2449 81 0 0 chr15 44082984 44083281 -41612473 - AluSp SINE Alu -14 299 3 1610 128 67 83 chr15 44083281 44083389 -41612365 - AluJo SINE Alu -225 108 4 213 294 95 56 chr15 44083520 44083646 -41612108 + L2 LINE L2 3173 3303 -10 735 190 14 60 chr15 44083782 44083855 -41611899 - REP3 LTR ERV 0 562 487 2501 67 0 0 chr15 44083855 44084155 -41611599 - AluY SINE Alu -11 300 1 735 190 14 60 chr15 44084155 44084266 -41611488 - REP3 LTR ERV -75 487 382 391 206 41 0 chr15 44084266 44084339 -41611415 - MER2 DNA MER2_type 0 345 270 1207 133 0 11 chr15 44084345 44084358 -41611396 + AluSg/x SINE Alu 118 130 -180 2279 102 7 0 chr15 44084358 44084662 -41611092 + AluSx SINE Alu 1 306 -6 1207 133 0 11 chr15 44084662 44084828 -41610926 + AluSg/x SINE Alu 130 295 -15 1309 121 6 0 chr15 44084831 44085004 -41610750 + AluSx SINE Alu 1 174 -138 488 232 152 139 chr15 44085115 44085338 -41610416 + L1MC4 LINE L1 5943 6162 -1646 2320 100 7 10 chr15 44085338 44085648 -41610106 + AluSc SINE Alu 1 309 0 488 232 152 139 chr15 44085648 44086439 -41609315 + L1MC4 LINE L1 6162 6927 -881 2495 74 0 3 chr15 44086439 44086748 -41609006 + AluY SINE Alu 1 308 -3 488 232 152 139 chr15 44086748 44086796 -41608958 + L1MC4 LINE L1 6927 6973 -835 1228 184 47 49 chr15 44086817 44087110 -41608644 + L1MD2 LINE L1 6033 7797 -11 711 244 182 40 chr15 44087114 44087285 -41608469 + L1MC4 LINE L1 6274 6009 -350 2404 82 10 0 chr15 44087285 44087591 -41608163 + AluSp SINE Alu 2 310 -3 711 244 182 40 chr15 44087591 44088000 -41607754 + L1MC4 LINE L1 6008 6358 -1 2293 35 38 38 chr15 44088000 44088288 -41607466 - AluY SINE Alu -13 298 11 600 276 87 66 chr15 44088368 44088822 -41606932 + MLT1G3 LTR MaLR 25 555 0 226 276 124 0 chr15 44088906 44089011 -41606743 + L1MC4 LINE L1 7794 7911 -131 698 201 112 12 chr15 44089139 44089308 -41606446 - AluJo SINE Alu -12 300 115 1943 235 48 55 chr15 44089367 44089665 -41606089 - MER68 LTR ERV1 -1 561 267 2513 71 0 0 chr15 44089665 44089959 -41605795 - AluSg SINE Alu -16 294 1 1943 235 48 55 chr15 44089959 44090225 -41605529 - MER68 LTR ERV1 -295 267 1 2230 118 7 0 chr15 44090903 44091208 -41604546 + AluSq SINE Alu 1 307 -6 1247 134 0 0 chr15 44091209 44091381 -41604373 + AluSg/x SINE Alu 126 297 -15 2140 136 7 3 chr15 44091445 44091755 -41603999 + AluSx SINE Alu 1 311 -1 2313 111 3 0 chr15 44091854 44092160 -41603594 + AluSq SINE Alu 1 307 -6 2153 146 0 3 chr15 44092170 44092478 -41603276 + AluSx SINE Alu 1 307 -5 1388 226 3 20 chr15 44092878 44093184 -41602570 - AluJo SINE Alu -8 304 4 729 202 0 0 chr15 44093198 44093322 -41602432 - FLAM_C SINE Alu -18 125 2 207 0 0 0 chr15 44093813 44093836 -41601918 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1580 182 7 27 chr15 44093838 44094134 -41601620 - AluJo SINE Alu -22 290 1 1922 158 7 0 chr15 44094293 44094584 -41601170 + AluJb SINE Alu 1 293 -19 1791 134 65 10 chr15 44094594 44094885 -41600869 + AluSx SINE Alu 1 307 -5 1316 183 5 5 chr15 44095000 44095224 -41600530 + AluJb SINE Alu 77 300 -12 2212 102 0 10 chr15 44095360 44095654 -41600100 + AluSg SINE Alu 1 291 -19 623 98 0 0 chr15 44095928 44096010 -41599744 + L1MB5 LINE L1 6038 6119 -55 1431 183 49 3 chr15 44096010 44096294 -41599460 - AluJo SINE Alu -2 310 14 255 183 33 0 chr15 44096294 44096354 -41599400 + L1MB5 LINE L1 6113 6174 0 1733 156 20 17 chr15 44097287 44097589 -41598165 - AluJb SINE Alu -8 304 2 36 23 0 0 chr15 44097849 44097892 -41597862 + AT_rich Low_complexity Low_complexity 1 43 0 3418 147 27 56 chr15 44098014 44098675 -41597079 + L1MB3 LINE L1 5460 6101 -82 1918 101 97 4 chr15 44098678 44098946 -41596808 + AluSx SINE Alu 1 293 -19 28 29 0 0 chr15 44098948 44098983 -41596771 + AT_rich Low_complexity Low_complexity 1 35 0 334 163 0 81 chr15 44098983 44099069 -41596685 + L1MB3 LINE L1 6096 6174 -9 2416 73 0 10 chr15 44099069 44099371 -41596383 - AluY SINE Alu -12 299 1 2173 119 3 3 chr15 44099805 44100099 -41595655 - AluSx SINE Alu -18 294 1 2893 19 0 0 chr15 44101102 44101415 -41594339 + AluYb8 SINE Alu 1 313 -5 727 242 0 12 chr15 44102186 44102347 -41593407 + FRAM SINE Alu 1 157 -19 1795 146 50 4 chr15 44102352 44102633 -41593121 + AluJb SINE Alu 2 295 -17 241 195 13 13 chr15 44103505 44103582 -41592172 + (TA)n Simple_repeat Simple_repeat 1 77 0 1170 170 24 89 chr15 44103582 44103829 -41591925 - AluJb SINE Alu -24 288 58 1935 123 21 21 chr15 44103829 44104113 -41591641 - AluSx SINE Alu -28 284 1 252 118 78 0 chr15 44104189 44104240 -41591514 + L1MB8 LINE L1 5297 5351 -949 1344 190 17 0 chr15 44104340 44104572 -41591182 + AluJb SINE Alu 47 282 -30 339 102 0 0 chr15 44104573 44104622 -41591132 - AluSg/x SINE Alu -169 131 83 486 0 0 0 chr15 44104638 44104692 -41591062 + (TAAAA)n Simple_repeat Simple_repeat 4 57 0 3091 160 35 32 chr15 44104692 44105098 -41590656 + L1MB8 LINE L1 5557 5967 -211 2196 113 7 3 chr15 44105098 44105391 -41590363 + AluSg SINE Alu 1 294 -16 3091 160 35 32 chr15 44105391 44105604 -41590150 + L1MB8 LINE L1 5967 6178 0 303 188 25 62 chr15 44105624 44105704 -41590050 + LTR9 LTR ERV1 449 525 -87 2438 102 0 0 chr15 44106314 44106627 -41589127 + AluSq SINE Alu 1 313 0 1515 158 65 38 chr15 44106725 44106860 -41588894 + AluSx SINE Alu 2 132 -180 2518 84 0 0 chr15 44106860 44107169 -41588585 + AluSx SINE Alu 1 309 -3 2327 81 44 0 chr15 44107170 44107467 -41588287 + AluSg SINE Alu 1 310 0 1515 158 65 38 chr15 44107467 44107620 -41588134 + AluSx SINE Alu 131 300 -12 2897 82 12 15 chr15 44107629 44108033 -41587721 + L1PB2 LINE L1 5746 6148 -3 2232 128 3 0 chr15 44108199 44108496 -41587258 - AluSq SINE Alu -14 299 2 297 282 13 0 chr15 44109369 44109447 -41586307 - MER112 DNA MER1_type -14 246 168 1337 155 18 5 chr15 44109458 44109677 -41586077 + AluJb SINE Alu 86 307 -5 528 240 58 7 chr15 44109688 44109842 -41585912 - MER112 DNA MER1_type -95 165 4 2260 104 3 3 chr15 44110008 44110307 -41585447 - AluSc SINE Alu -10 299 1 2367 82 0 16 chr15 44110462 44110766 -41584988 - AluY SINE Alu -12 299 1 2186 114 0 3 chr15 44110778 44111067 -41584687 - AluSq SINE Alu -25 288 1 645 250 94 9 chr15 44111453 44111665 -41584089 + MIR SINE MIR 30 259 -3 2248 112 0 10 chr15 44111926 44112231 -41583523 + AluSg SINE Alu 1 302 -8 1379 177 159 17 chr15 44112440 44112791 -41582963 - L1ME2 LINE L1 -68 6096 5696 1902 154 3 10 chr15 44112791 44113083 -41582671 - AluJb SINE Alu -22 290 1 2398 82 7 0 chr15 44113233 44113567 -41582187 - AluSp SINE Alu 0 336 1 733 228 33 58 chr15 44113579 44113820 -41581934 - MER46C DNA MER2_type -80 258 24 714 219 38 22 chr15 44114140 44114323 -41581431 - MIR SINE MIR -26 236 51 446 119 0 83 chr15 44114335 44114419 -41581335 - AluJ/FRAM SINE Alu -15 297 221 1080 162 61 44 chr15 44114452 44114680 -41581074 - AluJo SINE Alu -52 260 29 474 155 287 31 chr15 44114716 44114845 -41580909 + FRAM SINE Alu 5 166 0 266 291 126 71 chr15 44115055 44115470 -41580284 + L2 LINE L2 2606 3054 -218 2073 126 10 0 chr15 44115509 44115802 -41579952 + AluSx SINE Alu 1 296 -16 1982 109 65 7 chr15 44115804 44116097 -41579657 + AluSg SINE Alu 1 310 0 2261 109 0 0 chr15 44116204 44116506 -41579248 - AluY SINE Alu -9 302 1 1355 164 82 0 chr15 44116881 44117113 -41578641 - AluJb SINE Alu -19 293 43 2156 112 3 7 chr15 44117119 44117414 -41578340 - AluSx SINE Alu -18 294 1 1482 184 59 14 chr15 44117489 44117777 -41577977 - AluJb SINE Alu -11 301 1 2279 117 0 0 chr15 44118363 44118661 -41577093 + AluSx SINE Alu 1 298 -14 33 0 0 0 chr15 44118881 44118914 -41576840 + AT_rich Low_complexity Low_complexity 1 33 0 1359 172 11 42 chr15 44119033 44119294 -41576460 + AluJo SINE Alu 39 291 -21 324 0 0 0 chr15 44119294 44119330 -41576424 + (TG)n Simple_repeat Simple_repeat 2 37 0 1894 135 57 14 chr15 44119450 44119746 -41576008 - AluSx SINE Alu -3 309 1 895 73 9 0 chr15 44119934 44120044 -41575710 + AluSq/x SINE Alu 23 133 -180 2172 91 9 41 chr15 44120048 44120181 -41575573 + AluSc SINE Alu 1 137 -172 2338 105 0 0 chr15 44120181 44120485 -41575269 + AluSc SINE Alu 1 304 -5 2172 91 9 41 chr15 44120485 44120669 -41575085 + AluSc SINE Alu 137 308 -1 4655 132 9 3 chr15 44120669 44121358 -41574396 - MER49 LTR ERV1 -33 890 198 1491 118 0 5 chr15 44121391 44121603 -41574151 - MER49 LTR ERV1 -712 211 1 1717 187 21 3 chr15 441222